Citrus Sinensis ID: 040515
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 251 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L3X9 | 461 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.984 | 0.535 | 0.776 | 1e-115 | |
| P56902 | 421 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.976 | 0.581 | 0.555 | 9e-73 | |
| O94297 | 426 | Putative 3-oxoacyl-[acyl- | yes | no | 0.980 | 0.577 | 0.519 | 2e-70 | |
| Q9NWU1 | 459 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.960 | 0.525 | 0.552 | 7e-69 | |
| Q9D404 | 459 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.960 | 0.525 | 0.544 | 4e-68 | |
| O34340 | 413 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.980 | 0.595 | 0.513 | 3e-66 | |
| Q83E37 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.980 | 0.594 | 0.496 | 8e-66 | |
| Q9KQH9 | 414 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.984 | 0.596 | 0.505 | 2e-64 | |
| P55338 | 415 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.984 | 0.595 | 0.503 | 7e-64 | |
| Q0VCA7 | 460 | 3-oxoacyl-[acyl-carrier-p | yes | no | 0.960 | 0.523 | 0.540 | 1e-61 |
| >sp|Q8L3X9|KASM_ARATH 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/259 (77%), Positives = 224/259 (86%), Gaps = 12/259 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N
Sbjct: 200 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFN 259
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+PQEASRPFDC RDGF E EHAK+RGAKIYAE+ GYGMSGDAHHITQP
Sbjct: 260 SSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQP 319
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DGKGA+LAMTRAL+QSGL +Q+DYVNAHATSTP+GD VEA AI+TVFS+HATSG+LA
Sbjct: 320 PEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLA 379
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
FSSTKGA GHLLGAAGAVEAIF++L IHHGVAP+TLN+ PDPIF+ FMPLT SK M +
Sbjct: 380 FSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLV 439
Query: 229 SAALSNSFGFGGTNASLLF 247
A+SNSFGFGGTNASLLF
Sbjct: 440 RTAMSNSFGFGGTNASLLF 458
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Catalyzes all the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Able to elongate saturated acyl chains from 4 to at least 16 carbons. Uses malonyl-CoA but not acetyl-CoA as primer substrate. When expressed in a heterologous system, reveals a bimodal distribution of products, with peaks at C8 and C14-C16. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 1 |
| >sp|P56902|FABF_RHIME 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhizobium meliloti (strain 1021) GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 145/261 (55%), Positives = 183/261 (70%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTAC+TGAH+IGDA+R+I GD+DVMVAGGTES I +S+AGF +AL+T++N
Sbjct: 161 GPNHSVVTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHN 220
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRP+D RDGF ELEHA+ RGAKIYAEV GYG+SGDA HIT P
Sbjct: 221 DNPEKASRPYDADRDGFVMGEGAGIVVLEELEHARARGAKIYAEVIGYGLSGDAFHITAP 280
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GA M ALK++G+ + +DY+NAH TST + DT+E A+ + D A+ ++
Sbjct: 281 SEDGEGAYRCMQMALKRAGVTAADIDYINAHGTST-MADTIELGAVERLVGDSAS--RIS 337
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK AIGHLLGAAGAVEAIF+ L I +AP TLNL P + +P A K I
Sbjct: 338 MSSTKSAIGHLLGAAGAVEAIFSALAIRDNIAPPTLNLDNPSVETKIDLVPHVARK-REI 396
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ ALSNSFGFGGTNASL+ +
Sbjct: 397 NVALSNSFGFGGTNASLILRR 417
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|O94297|OXSM_SCHPO Putative 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC887.13c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 136/262 (51%), Positives = 179/262 (68%), Gaps = 16/262 (6%)
Query: 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 62
NH TACA G H+IGDA I+ G +DV++AGG+ES I+ L++AGF K+R+L+TK+N
Sbjct: 163 NHTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDN 222
Query: 63 PQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 110
P+ ASRPFD RDGF ELEHAK R A IYAE+ GYG++ D++HIT P+
Sbjct: 223 PKAASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNP 282
Query: 111 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD-HATSGSLAF 169
+G A AM R+LKQ+GL + Q+DY+NAHATST LGD E+ AI + D + +
Sbjct: 283 NGDAAYYAMKRSLKQAGLSASQLDYINAHATSTKLGDVAESIAITRLLCDVNRNPEAFPV 342
Query: 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPD--PIFNDNFMPLTASKDMP 227
SS+KG+IGHLLGAAGA+E+++ VLT+ GV P TLN D F +++P +K+
Sbjct: 343 SSSKGSIGHLLGAAGAIESVYTVLTVQKGVLPPTLNFEYSDIPQQFQCDYVP-NVAKESR 401
Query: 228 ISAALSNSFGFGGTNASLLFTK 249
I+ ALSNSFGFGGTNASL F K
Sbjct: 402 INVALSNSFGFGGTNASLCFKK 423
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9NWU1|OXSM_HUMAN 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Homo sapiens GN=OXSM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 143/259 (55%), Positives = 175/259 (67%), Gaps = 18/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 200 GPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--N 257
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E EHA +R A+IYAEV GYG+SGDA HIT P
Sbjct: 258 SDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP 317
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA
Sbjct: 318 DPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALA 375
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTKGA GHLLGAAGAVEA F L ++ P TLNL +P F+ N++PL A K
Sbjct: 376 VSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTE 435
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 436 KRFIGLTNSFGFGGTNATL 454
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9D404|OXSM_MOUSE 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Mus musculus GN=Oxsm PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 141/259 (54%), Positives = 175/259 (67%), Gaps = 18/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL++ N
Sbjct: 200 GPNHSVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSS--N 257
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E EHA +RGA+IYAE+ GYG+SGDA HIT P
Sbjct: 258 PDPKLACRPFHPERDGFVMGEGAAVLVLEEHEHAVQRGARIYAEILGYGLSGDAGHITAP 317
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M A+K +G+ Q+ YVNAHATSTPLGD E AI+ +F DHA +LA
Sbjct: 318 DPEGEGALRCMAAAVKDAGVSPEQISYVNAHATSTPLGDAAENRAIKRLFRDHAC--ALA 375
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTKGA GHLLGAAGAVEA F L +H P TLNL +P F+ N++PL + K
Sbjct: 376 ISSTKGATGHLLGAAGAVEATFTALACYHQKLPPTLNLDCTEPEFDLNYVPLESQEWKAE 435
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 436 GRCIGLTNSFGFGGTNATL 454
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May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis (strain 168) GN=fabF PE=3 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (641), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/263 (51%), Positives = 172/263 (65%), Gaps = 17/263 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N VTACATG +SIGDA ++IQ GD+DVMV GGTE+ + +S AGF ++AL+T N
Sbjct: 155 GVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSFAGFSANKALST--N 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRPFD RDGF ELEHA RGAKIY E+ GYG +GDA+HIT P
Sbjct: 213 PDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+G AM A+K +G+ ++DY+NAH TST D E AI+TVF +HA LA
Sbjct: 273 AQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAH--KLA 330
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAG +EAIF++L I GV P T+N+ PD + +++P A + +
Sbjct: 331 VSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARR-QEL 389
Query: 229 SAALSNSFGFGGTNASLLFTKCQ 251
+ LSNS GFGG NA+L+F K Q
Sbjct: 390 NYVLSNSLGFGGHNATLIFKKYQ 412
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q83E37|FABF_COXBU 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fabF PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 172/262 (65%), Gaps = 16/262 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN + VTAC TG H+IG AARMI D+D M+AGGTE + L + GF RAL+T+ N
Sbjct: 155 GPNISIVTACTTGLHNIGHAARMIAHNDADAMIAGGTEMASTPLGIGGFAAVRALSTR-N 213
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRP+D GRDGF ELEHAKKR A IYAE+ G+GMSGDA+H+T+P
Sbjct: 214 DEPEKASRPWDKGRDGFVLGEGAACVVVEELEHAKKRNATIYAEIIGFGMSGDAYHMTRP 273
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+ +G M +L+ +G+ +VDY+NAH TSTP D +EA AI+ F DHA LA
Sbjct: 274 DPEAEGFTTCMKNSLRDAGIAPERVDYINAHGTSTPAADPLEARAIKKTFGDHAY--KLA 331
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GH+LGAAGA+E + +VL I AP T+NL PD + +F+P +++M I
Sbjct: 332 VSSTKSMTGHMLGAAGALETVISVLAIRDNTAPPTINLENPDEGCDLDFVP-NEAREMKI 390
Query: 229 SAALSNSFGFGGTNASLLFTKC 250
+SNSFGFGGTN +L+ ++
Sbjct: 391 DTVMSNSFGFGGTNGTLVLSRV 412
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Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q9KQH9|FABF_VIBCH 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fabF PE=3 SV=3 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/261 (50%), Positives = 165/261 (63%), Gaps = 14/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN A TAC TG H+IG AARMI +GD+D MVAGG E + L MAGF ++AL+T+ N
Sbjct: 155 GPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-N 213
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ+ASRP+D RDGF E EHAK RGAKIYAEV G+GMSGDA+H+T P
Sbjct: 214 DEPQKASRPWDKDRDGFVLGDGAGIMVLEEYEHAKARGAKIYAEVVGFGMSGDAYHMTSP 273
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG G LAM A++ +G+ Q+ YVNAH TSTP GD E I+ + T L
Sbjct: 274 SEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEVKGIKRALGEAGTKQVL- 332
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAG+VEAI V+++ + P T+NL P+ + +P A K +
Sbjct: 333 VSSTKSMTGHLLGAAGSVEAIITVMSLVDQMVPPTINLDNPEEGLGVDLVPHVARKVESM 392
Query: 229 SAALSNSFGFGGTNASLLFTK 249
A+ NSFGFGGTN SL+F +
Sbjct: 393 EYAMCNSFGFGGTNGSLIFKR 413
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|P55338|FABF_VIBHA 3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 168/262 (64%), Gaps = 15/262 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN A TAC TG H+IG AARMI +GD++ MVAGG E + L MAGF ++AL+T+ N
Sbjct: 155 GPNIAISTACTTGLHNIGHAARMIAYGDAEAMVAGGAEKASTPLGMAGFGAAKALSTR-N 213
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ+ASRP+D GRDGF E EHAK RGAKIYAE+ G+GMSGDA+H+T P
Sbjct: 214 DEPQKASRPWDKGRDGFVLGDGAGVMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSP 273
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG G LAM A++ + + QV YVNAH TSTP GD E ++ + + L
Sbjct: 274 SEDGSGGALAMEAAMRDANITGTQVGYVNAHGTSTPAGDVAEIKGVKRALGEEGSKQVL- 332
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAG+VEAI VL++ + P T+NL P+ + + +P TA K + +
Sbjct: 333 VSSTKSMTGHLLGAAGSVEAIITVLSLVDQIVPPTINLDDPEEGLDIDLVPHTARK-VDM 391
Query: 229 SAALSNSFGFGGTNASLLFTKC 250
A+ NSFGFGGTN SL+F K
Sbjct: 392 EYAICNSFGFGGTNGSLVFKKI 413
|
Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Has a preference for short chain acid substrates and may function to supply the octanoic substrates for lipoic acid biosynthesis. Vibrio harveyi (taxid: 669) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q0VCA7|OXSM_BOVIN 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Bos taurus GN=OXSM PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/259 (54%), Positives = 171/259 (66%), Gaps = 18/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R + GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 201 GPNHAVSTACTTGAHAVGDSFRFVAHGDADVMVAGGTDSCISPLSLAGFARARALST--N 258
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E HA +RGA++YAE+ GYG+SGDA HIT P
Sbjct: 259 TDPKSACRPFHPQRDGFVMGEGAAVLVLEEHRHALRRGARVYAEIVGYGLSGDAGHITAP 318
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA M A+K +G+Q +V Y+NAHATSTPLGD E AI+ +F DHA LA
Sbjct: 319 DPGGEGAFRCMAAAVKDAGIQPEEVSYINAHATSTPLGDAAENKAIKQLFKDHAH--VLA 376
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTKGA GHLLG AGA EA F L +H P TLNL +P F+ N++PL A K
Sbjct: 377 VSSTKGATGHLLGTAGAAEAAFTALACYHRKLPPTLNLDCTEPHFDLNYVPLKAQEWKAE 436
Query: 227 PISAALSNSFGFGGTNASL 245
AL+NSFGFGGTNA+L
Sbjct: 437 NRRIALTNSFGFGGTNATL 455
|
May play a role in the biosynthesis of lipoic acid as well as longer chain fatty acids required for optimal mitochondrial function. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 4 EC: 1 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 251 | ||||||
| TAIR|locus:2058359 | 461 | AT2G04540 [Arabidopsis thalian | 0.984 | 0.535 | 0.733 | 3.2e-97 | |
| ASPGD|ASPL0000064843 | 430 | AN7489 [Emericella nidulans (t | 0.988 | 0.576 | 0.527 | 3.7e-64 | |
| UNIPROTKB|E1BYY7 | 461 | OXSM "3-oxoacyl-[acyl-carrier- | 0.976 | 0.531 | 0.517 | 9.7e-64 | |
| UNIPROTKB|Q0C090 | 428 | fabF "3-oxoacyl-[acyl-carrier- | 0.980 | 0.574 | 0.521 | 2.6e-63 | |
| TIGR_CMR|SPO_2271 | 421 | SPO_2271 "3-oxoacyl-(acyl carr | 0.976 | 0.581 | 0.494 | 9.3e-59 | |
| TIGR_CMR|APH_0930 | 423 | APH_0930 "3-oxoacyl-(acyl-carr | 0.968 | 0.574 | 0.496 | 1.9e-58 | |
| UNIPROTKB|F1RS43 | 273 | OXSM "Uncharacterized protein" | 0.960 | 0.882 | 0.505 | 3.2e-58 | |
| UNIPROTKB|Q9NWU1 | 459 | OXSM "3-oxoacyl-[acyl-carrier- | 0.960 | 0.525 | 0.509 | 4e-58 | |
| POMBASE|SPBC887.13c | 426 | SPBC887.13c "3-oxoacyl-[acyl-c | 0.980 | 0.577 | 0.484 | 4e-58 | |
| UNIPROTKB|E2R866 | 460 | OXSM "3-oxoacyl-[acyl-carrier- | 0.960 | 0.523 | 0.509 | 5.1e-58 |
| TAIR|locus:2058359 AT2G04540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 190/259 (73%), Positives = 213/259 (82%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N
Sbjct: 200 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFN 259
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+PQEASRPFDC RDGF E EHAK+RGAKIYAE+ GYGMSGDAHHITQP
Sbjct: 260 SSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQP 319
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DGKGA+LAMTRAL+QSGL +Q+DYVNAHATSTP+GD VEA AI+TVFS+HATSG+LA
Sbjct: 320 PEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLA 379
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
FSSTK VEAIF++L IHHGVAP+TLN+ PDPIF+ FMPLT SK M +
Sbjct: 380 FSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLV 439
Query: 229 SAALSNSFGFGGTNASLLF 247
A+SNSFGFGGTNASLLF
Sbjct: 440 RTAMSNSFGFGGTNASLLF 458
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| ASPGD|ASPL0000064843 AN7489 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 134/254 (52%), Positives = 171/254 (67%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+A TAC TGAHSIGDAAR I GD+DVM+AGG ES I L++ GF ++R+L T YN
Sbjct: 175 GPNHSATTACTTGAHSIGDAARFIACGDADVMLAGGAESCIHPLAIGGFARARSLATAYN 234
Query: 61 GTPQEASRPFDCGRDGFEL--EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILA 118
P+++SRPFD RDGF + EHAK RGA+IYAEV+GYG SGDAHH+T P +G GA+LA
Sbjct: 235 DRPEKSSRPFDADRDGFVVGEEHAKARGARIYAEVKGYGCSGDAHHMTAPKANGGGALLA 294
Query: 119 MTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF---SDHATSGSLAFSSTKXX 175
M +ALK + L+ VDY+NAHATST +GD E AI+ + + + SSTK
Sbjct: 295 MKKALKNACLEPSAVDYINAHATSTVIGDAAENAAIKALLLGPGGKQKAADVNVSSTKGA 354
Query: 176 XXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235
VEA+F VL IH V P T+NL + + F+ N+ P A ++ I AL+NS
Sbjct: 355 IGHLLGGAGAVEALFTVLAIHENVMPPTINLDRLNDGFDFNYAPNEA-QERRIDLALTNS 413
Query: 236 FGFGGTNASLLFTK 249
FGFGGTN+SL F+K
Sbjct: 414 FGFGGTNSSLCFSK 427
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| UNIPROTKB|E1BYY7 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 135/261 (51%), Positives = 172/261 (65%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH+IGD+ R I GD+DVM+AGGTE+ I LS+AGF ++RAL+T +N
Sbjct: 200 GPNHAVSTACTTGAHAIGDSFRFIALGDADVMLAGGTEACISPLSLAGFARARALSTGFN 259
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+P++A RPFD R+GF E HA +RGA+IYAEV GYG+SGDA HIT P
Sbjct: 260 ASPKKACRPFDSQREGFVMGEGAAVLVLEEYRHAVQRGARIYAEVLGYGLSGDACHITAP 319
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+ +G GA M+ A+K SG++ V YVNAHATSTPLGD E AI+ +F H S ++A
Sbjct: 320 NPEGDGAFRCMSAAIKDSGIKPEDVTYVNAHATSTPLGDAAENQAIKKLFKSH--SHNIA 377
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTK +EA F L+ +H + P TLNL K +P F+ N++PLTA K
Sbjct: 378 VSSTKGATGHLLGAAGAIEAAFTALSCYHAILPPTLNLEKTEPEFDLNYVPLTAQEWKTE 437
Query: 227 PISAALSNSFGFGGTNASLLF 247
AL+NSFGFGGTNA+L F
Sbjct: 438 KRRVALTNSFGFGGTNATLCF 458
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| UNIPROTKB|Q0C090 fabF "3-oxoacyl-[acyl-carrier-protein] synthase 2" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 136/261 (52%), Positives = 168/261 (64%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTACATGAH+IGD+AR+I +GD+DVMVAGG E+ I L +AGFC ++A++T +N
Sbjct: 169 GPNHSVVTACATGAHAIGDSARLISYGDADVMVAGGAEAVIGRLGIAGFCAAKAMSTSFN 228
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASRP+D RDGF E EHAK RGAKIYAEV GYG++GDAHHIT P
Sbjct: 229 DTPEKASRPYDKDRDGFVMGEGAAVLVLEEYEHAKARGAKIYAEVAGYGLTGDAHHITAP 288
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G AM ALK SG+ ++DYVNAH TSTP GD EA A+ F DHA + ++
Sbjct: 289 AEGAEGGYRAMKMALKNSGIDPAEIDYVNAHGTSTPKGDEGEAGAVERAFGDHAKN--IS 346
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EA F L I V P TLNL P + +P A K +
Sbjct: 347 MSSTKSAVGHLLGAAGAIEAAFCALAIRDQVMPPTLNLDNPSFETVLDLIPHKAKKGR-V 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
AA+SNSFGFGGTNASL+ K
Sbjct: 406 RAAMSNSFGFGGTNASLVLRK 426
|
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| TIGR_CMR|SPO_2271 SPO_2271 "3-oxoacyl-(acyl carrier protein) synthase II" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 129/261 (49%), Positives = 167/261 (63%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTAC+TGAH+IGDA+R+I+ GD+DVM+AGG E+ I + +AGF +AL+TKY
Sbjct: 163 GPNHSVVTACSTGAHAIGDASRIIRAGDADVMIAGGGEACICEIGIAGFNACKALSTKYA 222
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRP+D RDGF + EHAK RGAKIYAEV GYGMSGDA+HIT P
Sbjct: 223 DNPKAASRPYDADRDGFVMGEGAGIVVLEDYEHAKARGAKIYAEVLGYGMSGDAYHITAP 282
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G GA +M AL+ +GL+ +DY+NAH TST + DT+E A+ + +HA + +
Sbjct: 283 SETGDGAERSMRAALRSAGLEPSDLDYINAHGTST-MADTIELGAVERLLGNHAAN--VT 339
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +EAIF++L I VAP T+NL P + P A + I
Sbjct: 340 MSSTKSATGHLLGAAGAIEAIFSILAIRDQVAPPTINLDNPAVETPVDLAP-NAKRARKI 398
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSNSFGFGGTNAS++F K
Sbjct: 399 DVALSNSFGFGGTNASVIFGK 419
|
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| TIGR_CMR|APH_0930 APH_0930 "3-oxoacyl-(acyl-carrier-protein) synthase II" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 128/258 (49%), Positives = 170/258 (65%)
Query: 4 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTP 63
+A V ACATGA +I +AAR+I+ G D++VAGG+ES++ +AGF +AL+TK+N TP
Sbjct: 168 NAVVGACATGAIAITEAARVIESGVCDIVVAGGSESALCRSGIAGFSIIKALSTKFNDTP 227
Query: 64 QEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID 111
Q ASRP+D RDGF + E+AKKRGA+IYAE+ GYG++ DA+HIT PH
Sbjct: 228 QVASRPWDKDRDGFVMGEGAGVVVLEDYEYAKKRGARIYAELTGYGLTADAYHITAPHPQ 287
Query: 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSS 171
G+G + AM AL+ + + ++DY+NAH TSTP GD+VE AI+ +F DHA +A SS
Sbjct: 288 GEGGMRAMEMALRTANISPSEIDYINAHGTSTPTGDSVEIVAIKNLFQDHAYK--VAISS 345
Query: 172 TKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAA 231
TK VEAIF++L + HGV P TLNL N N +PL A ++ IS
Sbjct: 346 TKSSIGHLLGAAGSVEAIFSMLALQHGVLPPTLNLHNSTEDSNVNLVPLVA-EERKISHV 404
Query: 232 LSNSFGFGGTNASLLFTK 249
LSNSFGFGG NASL+F+K
Sbjct: 405 LSNSFGFGGVNASLIFSK 422
|
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| UNIPROTKB|F1RS43 OXSM "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 131/259 (50%), Positives = 162/259 (62%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 14 GPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--N 71
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P A RPF RDGF E EHA KRGA+IYAE+ GYG+SGDA HIT P
Sbjct: 72 SDPALACRPFHPKRDGFVMGEGAAVLVLEEREHAVKRGARIYAEILGYGLSGDAGHITAP 131
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+K +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA + LA
Sbjct: 132 DPGGEGALRCMAAAIKDAGVQPEEISYINAHATSTPLGDAAENRAIKHLFKDHAHA--LA 189
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTK EA F L ++ P TLNL +P F+ N++PL A K
Sbjct: 190 ISSTKGATGHLLGAAGAAEAAFTALACYYRKLPPTLNLDCTEPQFDLNYVPLKAQEWKTE 249
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 250 KRCIGLTNSFGFGGTNATL 268
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| UNIPROTKB|Q9NWU1 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 132/259 (50%), Positives = 164/259 (63%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 200 GPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--N 257
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E EHA +R A+IYAEV GYG+SGDA HIT P
Sbjct: 258 SDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP 317
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA + LA
Sbjct: 318 DPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAYA--LA 375
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTK VEA F L ++ P TLNL +P F+ N++PL A K
Sbjct: 376 VSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKAQEWKTE 435
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 436 KRFIGLTNSFGFGGTNATL 454
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| POMBASE|SPBC887.13c SPBC887.13c "3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 127/262 (48%), Positives = 168/262 (64%)
Query: 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT 62
NH TACA G H+IGDA I+ G +DV++AGG+ES I+ L++AGF K+R+L+TK+N
Sbjct: 163 NHTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFNDN 222
Query: 63 PQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI 110
P+ ASRPFD RDGF ELEHAK R A IYAE+ GYG++ D++HIT P+
Sbjct: 223 PKAASRPFDANRDGFVIGEGSAALVLEELEHAKNRNAHIYAEIVGYGLASDSYHITAPNP 282
Query: 111 DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD-HATSGSLAF 169
+G A AM R+LKQ+GL + Q+DY+NAHATST LGD E+ AI + D + +
Sbjct: 283 NGDAAYYAMKRSLKQAGLSASQLDYINAHATSTKLGDVAESIAITRLLCDVNRNPEAFPV 342
Query: 170 SSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPD-PI-FNDNFMPLTASKDMP 227
SS+K +E+++ VLT+ GV P TLN D P F +++P A K+
Sbjct: 343 SSSKGSIGHLLGAAGAIESVYTVLTVQKGVLPPTLNFEYSDIPQQFQCDYVPNVA-KESR 401
Query: 228 ISAALSNSFGFGGTNASLLFTK 249
I+ ALSNSFGFGGTNASL F K
Sbjct: 402 INVALSNSFGFGGTNASLCFKK 423
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| UNIPROTKB|E2R866 OXSM "3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 132/259 (50%), Positives = 165/259 (63%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 201 GPNHAVSTACTTGAHAVGDSFRFIAQGDADVMVAGGTDSCISPLSLAGFSRARALST--N 258
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E +HA +RGA+IYAEV GYG+SGDA HIT P
Sbjct: 259 PDPKLACRPFHPKRDGFVMGEGAAVLVLEEYDHAVQRGARIYAEVLGYGLSGDAGHITAP 318
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M A+K +G+Q ++ YVNAHATSTPLGD E AI+ +F DHA + LA
Sbjct: 319 DPEGEGALRCMAAAVKDAGVQPEEISYVNAHATSTPLGDAAENKAIKHLFKDHAPA--LA 376
Query: 169 FSSTKXXXXXXXXXXXXVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS--KDM 226
SSTK VEA F L ++ P TLNL +P F+ N++PL A K
Sbjct: 377 VSSTKGATGHLLGAAGAVEAAFTALACYYQKLPPTLNLDCTEPEFDLNYVPLKAQEWKIE 436
Query: 227 PISAALSNSFGFGGTNASL 245
L+NSFGFGGTNA+L
Sbjct: 437 KRCIGLTNSFGFGGTNATL 455
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8L3X9 | KASM_ARATH | 2, ., 3, ., 1, ., 4, 1 | 0.7760 | 0.9840 | 0.5357 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.II.519.1 | 3-oxoacyl-[acyl-carrier-protein] synthase II (EC-2.3.1.179) (415 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_fgenesh4_pg.C_LG_IX0832 | [acyl-carrier protein] S-malonyltransferase (EC-2.3.1.39) (371 aa) | • | • | • | • | • | 0.982 | |||
 | gw1.III.1824.1 | hypothetical protein (176 aa) | • | • | 0.922 | ||||||
 | grail3.0116012802 | enoyl-[acyl-carrier-protein] reductase (EC-1.3.1.10) (395 aa) | • | • | 0.909 | ||||||
 | eugene3.00031909 | enoyl-[acyl-carrier-protein] reductase (EC-1.3.1.10) (395 aa) | • | • | 0.908 | ||||||
 | eugene3.00160402 | SubName- Full=Putative uncharacterized protein; (391 aa) | • | • | 0.908 | ||||||
 | gw1.VIII.2033.1 | hypothetical protein (266 aa) | • | • | 0.905 | ||||||
 | gw1.XV.2222.1 | hypothetical protein (278 aa) | • | 0.899 | |||||||
 | gw1.XII.1777.1 | hypothetical protein (278 aa) | • | 0.899 | |||||||
 | gw1.V.169.1 | acyl- [acyl-carrier protein] desaturase (EC-1.14.19.2); Converts stearoyl-ACP to oleoyl-ACP by [...] (352 aa) | • | 0.899 | |||||||
 | gw1.I.9606.1 | hypothetical protein (292 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 251 | |||
| PLN02836 | 437 | PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protei | 1e-168 | |
| TIGR03150 | 407 | TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protei | 1e-134 | |
| PRK07314 | 411 | PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protei | 1e-132 | |
| cd00834 | 406 | cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier prot | 1e-124 | |
| PTZ00050 | 421 | PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein | 1e-118 | |
| PRK06333 | 424 | PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protei | 1e-107 | |
| COG0304 | 412 | COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) sy | 1e-105 | |
| PRK08439 | 406 | PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protei | 1e-77 | |
| PRK08722 | 414 | PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protei | 3e-77 | |
| PRK14691 | 342 | PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protei | 2e-70 | |
| PLN02787 | 540 | PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protei | 4e-70 | |
| PRK07967 | 406 | PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protei | 2e-68 | |
| PRK07910 | 418 | PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protei | 2e-67 | |
| PRK06501 | 425 | PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protei | 5e-62 | |
| PRK05952 | 381 | PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protei | 4e-60 | |
| PRK09185 | 392 | PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protei | 1e-59 | |
| PRK09116 | 405 | PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protei | 7e-54 | |
| cd00833 | 421 | cd00833, PKS, polyketide synthases (PKSs) polymeri | 4e-49 | |
| cd00828 | 407 | cd00828, elong_cond_enzymes, "elongating" condensi | 7e-44 | |
| PRK07103 | 410 | PRK07103, PRK07103, polyketide beta-ketoacyl:acyl | 1e-41 | |
| pfam02801 | 119 | pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase | 3e-41 | |
| cd00825 | 332 | cd00825, decarbox_cond_enzymes, decarboxylating co | 4e-36 | |
| COG3321 | 1061 | COG3321, COG3321, Polyketide synthase modules and | 4e-31 | |
| TIGR02813 | 2582 | TIGR02813, omega_3_PfaA, polyketide-type polyunsat | 1e-28 | |
| cd00327 | 254 | cd00327, cond_enzymes, Condensing enzymes; Family | 1e-23 | |
| cd00832 | 399 | cd00832, CLF, Chain-length factor (CLF) is a facto | 7e-20 | |
| pfam00109 | 243 | pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, | 2e-14 | |
| smart00825 | 298 | smart00825, PKS_KS, Beta-ketoacyl synthase | 1e-13 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 8e-07 | |
| PRK05790 | 393 | PRK05790, PRK05790, putative acyltransferase; Prov | 1e-04 | |
| PRK09052 | 399 | PRK09052, PRK09052, acetyl-CoA acetyltransferase; | 3e-04 | |
| TIGR01930 | 386 | TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltrans | 5e-04 | |
| PRK06445 | 394 | PRK06445, PRK06445, acetyl-CoA acetyltransferase; | 6e-04 | |
| pfam00108 | 262 | pfam00108, Thiolase_N, Thiolase, N-terminal domain | 8e-04 | |
| cd00751 | 386 | cd00751, thiolase, Thiolase are ubiquitous enzymes | 0.002 | |
| COG0183 | 392 | COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid | 0.002 | |
| PRK06205 | 404 | PRK06205, PRK06205, acetyl-CoA acetyltransferase; | 0.004 | |
| PRK06147 | 348 | PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protei | 0.004 |
| >gnl|CDD|215449 PLN02836, PLN02836, 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Score = 472 bits (1217), Expect = e-168
Identities = 211/260 (81%), Positives = 228/260 (87%), Gaps = 12/260 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N
Sbjct: 175 GPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFN 234
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P EASRPFDC RDGF ELEHAK+RGAKIYAEVRGYGMSGDAHHITQP
Sbjct: 235 SCPTEASRPFDCDRDGFVIGEGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQP 294
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
H DG+GA+LAMTRAL+QSGL +QVDYVNAHATSTPLGD VEA AI+TVFS+HATSG LA
Sbjct: 295 HEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSEHATSGGLA 354
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
FSSTKGA GHLLGAAGAVEAIF+VL IHHG+AP TLNL +PDPIF+D F+PLTASK M I
Sbjct: 355 FSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFDDGFVPLTASKAMLI 414
Query: 229 SAALSNSFGFGGTNASLLFT 248
AALSNSFGFGGTNASLLFT
Sbjct: 415 RAALSNSFGFGGTNASLLFT 434
|
Length = 437 |
| >gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Score = 382 bits (984), Expect = e-134
Identities = 152/259 (58%), Positives = 182/259 (70%), Gaps = 16/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA VTACATG H+IGDA R+IQ GD+DVM+AGG E++I L +AGF +AL+T N
Sbjct: 152 GPNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALST-RN 210
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPFD RDGF ELEHAK RGAKIYAE+ GYGMSGDA+HIT P
Sbjct: 211 DDPEKASRPFDKDRDGFVMGEGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAP 270
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA AM ALK +G+ VDY+NAH TSTPLGD E AI+ VF DHA LA
Sbjct: 271 APEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGDHAY--KLA 328
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAGA+EAIF VL + G+ P T+NL PDP + +++P A ++ I
Sbjct: 329 VSSTKSMTGHLLGAAGAIEAIFTVLALRDGIVPPTINLDNPDPECDLDYVPNEA-REAKI 387
Query: 229 SAALSNSFGFGGTNASLLF 247
ALSNSFGFGG NASL+F
Sbjct: 388 DYALSNSFGFGGHNASLVF 406
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II, FabF) is involved in the condensation step of fatty acid biosynthesis in which the malonyl donor group is decarboxylated and the resulting carbanion used to attack and extend the acyl group attached to the acyl carrier protein. Most genomes encoding fatty acid biosynthesis contain a number of condensing enzymes, often of all three types: 1, 2 and 3. Synthase 2 is mechanistically related to synthase 1 (KAS-I, FabB) containing a number of absolutely conserved catalytic residues in common. This model is based primarily on genes which are found in apparent operons with other essential genes of fatty acid biosynthesis (GenProp0681). The large gap between the trusted cutoff and the noise cutoff contains many genes which are not found adjacent to genes of the fatty acid pathway in genomes that often also contain a better hit to this model. These genes may be involved in other processes such as polyketide biosyntheses. Some genomes contain more than one above-trusted hit to this model which may result from recent paralogous expansions. Second hits to this model which are not next to other fatty acid biosynthesis genes may be involved in other processes. FabB sequences should fall well below the noise cutoff of this model [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 407 |
| >gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-132
Identities = 152/261 (58%), Positives = 185/261 (70%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTACATGAH+IGDAAR+I +GD+DVMVAGG E++I L +AGF +RAL+T+ N
Sbjct: 153 GPNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-N 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRPFD RDGF ELEHAK RGAKIYAEV GYGM+GDA+H+T P
Sbjct: 212 DDPERASRPFDKDRDGFVMGEGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAP 271
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GA AM ALK +G+ +DY+NAH TSTP GD E AI+ VF +HA +A
Sbjct: 272 APDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAGDKAETQAIKRVFGEHAY--KVA 329
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAGAVEAIF+VL I V P T+NL PD + +++P A ++ I
Sbjct: 330 VSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLDYVPNEA-RERKI 388
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSNSFGFGGTNASL+F +
Sbjct: 389 DYALSNSFGFGGTNASLVFKR 409
|
Length = 411 |
| >gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = e-124
Identities = 141/259 (54%), Positives = 178/259 (68%), Gaps = 16/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN+ TACA+GAH+IGDAAR+I+ G +DV++AGG E+ I L++AGF RAL+T+ +
Sbjct: 152 GPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRND 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPFD RDGF LEHAK RGAKIYAE+ GYG S DA+HIT P
Sbjct: 212 -DPEKASRPFDKDRDGFVLGEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAP 270
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GA AM AL +GL +DY+NAH TSTPL D E+ AI+ VF +HA +
Sbjct: 271 DPDGEGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAK--KVP 328
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAGAVEAI +L + GV P T+NL +PDP + +++P A ++ PI
Sbjct: 329 VSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDLDYVPNEA-REAPI 387
Query: 229 SAALSNSFGFGGTNASLLF 247
ALSNSFGFGG NASL+F
Sbjct: 388 RYALSNSFGFGGHNASLVF 406
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. Length = 406 |
| >gnl|CDD|240245 PTZ00050, PTZ00050, 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-118
Identities = 144/263 (54%), Positives = 177/263 (67%), Gaps = 15/263 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ +AVTACATGAH IG+A R I++G++D+M+ GGTE+SI +S AGF + RAL TKYN
Sbjct: 159 GPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYN 218
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRPFD R GF ELEHA +RGAKIYAE+RGYG S DAHHIT P
Sbjct: 219 DDPQRASRPFDKDRAGFVMGEGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAP 278
Query: 109 HIDGKGAILAMTRALKQSG-LQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 167
H DG+GA M ALK + + VDYVNAHATSTP+GD +E AI+ VF D L
Sbjct: 279 HPDGRGARRCMENALKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGDSGAP-KL 337
Query: 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM- 226
SSTKG +GHLLGAAGAVE+I +L+++ + P T+NL PD + N + + +
Sbjct: 338 YVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQ 397
Query: 227 PISAALSNSFGFGGTNASLLFTK 249
I A LS SFGFGG N +LLFTK
Sbjct: 398 SIDAVLSTSFGFGGVNTALLFTK 420
|
Length = 421 |
| >gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 316 bits (813), Expect = e-107
Identities = 135/262 (51%), Positives = 171/262 (65%), Gaps = 17/262 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP A VTACA G +IGDAAR+I+ G++DV V GGTE++ID +S+AGF +RAL+T++N
Sbjct: 164 GPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFN 223
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPFD RDGF LEHA RGA AE+ GYG S DA+H+T
Sbjct: 224 DAPEQASRPFDRDRDGFVMGEGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAG 283
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GA AM AL+Q+G+ +V ++NAHATSTP+GD E AI+ VF LA
Sbjct: 284 PEDGEGARRAMLIALRQAGIPPEEVQHLNAHATSTPVGDLGEVAAIKKVF---GHVSGLA 340
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMP 227
SSTK A GHLLGAAG VEAIF +L + +AP TLNL PDP + + A + M
Sbjct: 341 VSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDPAAEGLDVVANKA-RPMD 399
Query: 228 ISAALSNSFGFGGTNASLLFTK 249
+ ALSN FGFGG NAS+LF +
Sbjct: 400 MDYALSNGFGFGGVNASILFRR 421
|
Length = 424 |
| >gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 309 bits (794), Expect = e-105
Identities = 141/263 (53%), Positives = 177/263 (67%), Gaps = 19/263 (7%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN+ VTACATGAH+IGDA R+I+ G +DV++AGG E++I L +AGF RAL+T+ N
Sbjct: 153 GPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-N 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPFD RDGF ELEHA RGAKIYAE+ GYG + DA+HIT P
Sbjct: 212 DDPEKASRPFDKNRDGFVIGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAP 271
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GAI AM AL +GL +DY+NAH TSTP D E+ AI+ VF +HA SL
Sbjct: 272 APDGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHA--KSLP 329
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASK--DM 226
SSTK GH LGAAGAVEAI ++L + G+ P T+NL PDP D + + ++
Sbjct: 330 VSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAAD--LDVVPNEARTG 387
Query: 227 PISAALSNSFGFGGTNASLLFTK 249
+ AALSNSFGFGGTNASL+F +
Sbjct: 388 AVRAALSNSFGFGGTNASLVFKR 410
|
Length = 412 |
| >gnl|CDD|236265 PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 1e-77
Identities = 117/261 (44%), Positives = 164/261 (62%), Gaps = 20/261 (7%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN ++VTACA G H+I +A + I G +D M+ G ES+I + + GF +AL+T+ N
Sbjct: 153 GPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-N 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPFD RDGF E E AKKRGAKIYAE+ G+G SGDA+HIT P
Sbjct: 212 DDPKKASRPFDKDRDGFVMGEGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSP 271
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+ G + AM AL+ +G + ++DY+NAH TSTP D E A++ +F +
Sbjct: 272 APE--GPLRAMKAALEMAG--NPKIDYINAHGTSTPYNDKNETAALKELFGSKEKVPPV- 326
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTKG IGH LGAAGA+EA+ +++ + G+ P T+N PDP + +++P A K +
Sbjct: 327 -SSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDLDYIPNVARK-AEL 384
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ +SNSFGFGGTN ++F K
Sbjct: 385 NVVMSNSFGFGGTNGVVIFKK 405
|
Length = 406 |
| >gnl|CDD|181539 PRK08722, PRK08722, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 239 bits (610), Expect = 3e-77
Identities = 132/261 (50%), Positives = 167/261 (63%), Gaps = 14/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN A TAC TG H+IG AARMI +GD+D MVAGG E + L MAGF ++AL+T+ N
Sbjct: 155 GPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-N 213
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ+ASRP+D RDGF E EHAK RGAKIYAE+ G+GMSGDA+H+T P
Sbjct: 214 DEPQKASRPWDKDRDGFVLGDGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSP 273
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG G LAM A++ +G+ Q+ YVNAH TSTP GD E I+ + + L
Sbjct: 274 SEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDVAEIKGIKRALGEAGSKQVLV 333
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAG+VEAI V+++ + P T+NL P+ + + +P TA K +
Sbjct: 334 -SSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDLVPHTARKVESM 392
Query: 229 SAALSNSFGFGGTNASLLFTK 249
A+ NSFGFGGTN SL+F K
Sbjct: 393 EYAICNSFGFGGTNGSLIFKK 413
|
Length = 414 |
| >gnl|CDD|173154 PRK14691, PRK14691, 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 2e-70
Identities = 129/261 (49%), Positives = 166/261 (63%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP A VTACA G +IGDA RMI+ ++DV + GG E+ ID +S+AGF +RAL+T +N
Sbjct: 82 GPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFN 141
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASRPFD RDGF ELEHA RGAK AE+ GYG S DA+H+T
Sbjct: 142 STPEKASRPFDTARDGFVMGEGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSG 201
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG GA AM AL+Q+G+ QV ++NAHATSTP+GD E AI+ +F + S +LA
Sbjct: 202 AEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE---SNALA 258
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
+STK A GHLLGAAG +E IF VL + + P TLNL PDP + ++ +
Sbjct: 259 ITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIAGNAQPHDM 318
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ ALSN FGF G NAS+L +
Sbjct: 319 TYALSNGFGFAGVNASILLKR 339
|
Length = 342 |
| >gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Score = 224 bits (571), Expect = 4e-70
Identities = 118/259 (45%), Positives = 155/259 (59%), Gaps = 16/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN++ TACAT I +AA I G++DVM+ GG++++I + + GF RAL+ + N
Sbjct: 282 GPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR-N 340
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P +ASRP+D RDGF ELEHAKKRGA IYAE G + DA+H+T+P
Sbjct: 341 DDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEP 400
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
H +G G IL + +AL QSG+ V+Y+NAHATST GD E A+ F + L
Sbjct: 401 HPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQNP---ELR 457
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
+STK IGHLLGAAGAVEAI V I G +NL P+ + + + + I
Sbjct: 458 VNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKERLDI 517
Query: 229 SAALSNSFGFGGTNASLLF 247
ALSNSFGFGG N+S+LF
Sbjct: 518 KVALSNSFGFGGHNSSILF 536
|
Length = 540 |
| >gnl|CDD|181184 PRK07967, PRK07967, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 216 bits (551), Expect = 2e-68
Identities = 113/263 (42%), Positives = 154/263 (58%), Gaps = 26/263 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E +S F AL+TKYN
Sbjct: 153 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELDWEMSCL-FDAMGALSTKYN 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGAKIYAE+ GYG + D + + P
Sbjct: 212 DTPEKASRAYDANRDGFVIAGGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP 271
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M AL + + + +DY+N H TSTP+GD E AIR VF D + A
Sbjct: 272 --SGEGAVRCMQMAL--ATVDT-PIDYINTHGTSTPVGDVKELGAIREVFGDKSP----A 322
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPL--TASKDM 226
S+TK GH LGAAG EAI+++L + HG + N+ + DP MP+ + +
Sbjct: 323 ISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQAAG--MPIVTETTDNA 380
Query: 227 PISAALSNSFGFGGTNASLLFTK 249
++ +SNSFGFGGTNA+L+F +
Sbjct: 381 ELTTVMSNSFGFGGTNATLVFRR 403
|
Length = 406 |
| >gnl|CDD|236129 PRK07910, PRK07910, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 2e-67
Identities = 103/259 (39%), Positives = 140/259 (54%), Gaps = 25/259 (9%)
Query: 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA 66
V+ACA+G+ +I A R I G++D+ + GG E+ I+A+ +AGF + R + + N P A
Sbjct: 168 VSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGA 227
Query: 67 SRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKG 114
RPFD RDGF EHAK RGA I A + G ++ D H+ P +G+
Sbjct: 228 CRPFDKDRDGFVFGEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGER 287
Query: 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG 174
A AMTRA++ +GL +D+VNAHAT T +GD E AI H A + K
Sbjct: 288 AGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGGHRP----AVYAPKS 343
Query: 175 AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP----ISA 230
A+GH +GA GAVE+I VL + GV P TLNL DP + L P
Sbjct: 344 ALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEID-----LDVVAGEPRPGNYRY 398
Query: 231 ALSNSFGFGGTNASLLFTK 249
A++NSFGFGG N +L F +
Sbjct: 399 AINNSFGFGGHNVALAFGR 417
|
Length = 418 |
| >gnl|CDD|235817 PRK06501, PRK06501, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 5e-62
Identities = 107/253 (42%), Positives = 143/253 (56%), Gaps = 16/253 (6%)
Query: 8 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 67
TACA+GA +I I+ G++D + T+ S+ A ++ F AL+T+ N P++AS
Sbjct: 173 TACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQ-NDPPEKAS 231
Query: 68 RPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 115
+PF RDGF LE A RGAKI V G G D+ H T+ DG A
Sbjct: 232 KPFSKDRDGFVMAEGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPA 291
Query: 116 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 175
I A+ AL +GL Q+DY+NAH TSTP D +E + VF + S+ SS K
Sbjct: 292 IGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFGERL--ASIPVSSNKSM 349
Query: 176 IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235
IGH L AAGAVEA+F++LTI G P T+N PDP + +P ++D ++A LSNS
Sbjct: 350 IGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDVVP-NVARDARVTAVLSNS 408
Query: 236 FGFGGTNASLLFT 248
FGFGG NASL+ T
Sbjct: 409 FGFGGQNASLVLT 421
|
Length = 425 |
| >gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 4e-60
Identities = 98/257 (38%), Positives = 144/257 (56%), Gaps = 28/257 (10%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP A + ACATG +I +IQ G ++AG E+ I L++AGF + AL
Sbjct: 137 GPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALA---- 192
Query: 61 GTPQEASRPFDCGRDGFEL------------EHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+ + PFD R+G L E A+KRGAKIY ++ G+G++ DA+H++ P
Sbjct: 193 ---KTGAYPFDRQREGLVLGEGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAP 249
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DGK AI A+ + L +SGL +DY++AH T+T L D EA I+ +F +A
Sbjct: 250 EPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH-----RVA 304
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTKGA GH LGA+GA+ F++L + H P + L +P+ F+ NF + ++ P+
Sbjct: 305 VSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPE--FDLNF--VRQAQQSPL 360
Query: 229 SAALSNSFGFGGTNASL 245
L SFGFGG NA++
Sbjct: 361 QNVLCLSFGFGGQNAAI 377
|
Length = 381 |
| >gnl|CDD|236398 PRK09185, PRK09185, 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 1e-59
Identities = 97/256 (37%), Positives = 133/256 (51%), Gaps = 27/256 (10%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP + TAC++ A A R+++ G D + GG +S + L++ GF S +
Sbjct: 151 GPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGF-NSLESLSP-- 206
Query: 61 GTPQEASRPFDCGRDG---------FELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID 111
+ RPF RDG F LE R + G G S DAHH++ PH +
Sbjct: 207 ----QPCRPFSANRDGINIGEAAAFFLLE----REDDAAVALLGVGESSDAHHMSAPHPE 258
Query: 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSS 171
G GAILAM +AL +GL + Y+N H T+TPL D +E+ A+ VF D + SS
Sbjct: 259 GLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG-----VPCSS 313
Query: 172 TKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAA 231
TKG GH LGAAGAVEA L + HG+ P N +PDP ++ + ++ + I
Sbjct: 314 TKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYL-VENAQALAIRYV 372
Query: 232 LSNSFGFGGTNASLLF 247
LSNSF FGG N SL+F
Sbjct: 373 LSNSFAFGGNNCSLIF 388
|
Length = 392 |
| >gnl|CDD|181657 PRK09116, PRK09116, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 7e-54
Identities = 95/258 (36%), Positives = 128/258 (49%), Gaps = 35/258 (13%)
Query: 9 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL-------TTKYNG 61
AC +G+ IG A I++G VM+AGG E C + A T+ N
Sbjct: 163 ACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE---------LCPTEAAVFDTLFATSTRND 213
Query: 62 TPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH 109
P+ RPFD RDG ELEHAK RGA IYAE+ G+G + D H+TQP
Sbjct: 214 APELTPRPFDANRDGLVIGEGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQPQ 273
Query: 110 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169
+ +AM ALK +GL + YVNAH T+T GD E+ A VF +
Sbjct: 274 AETMQ--IAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGA-----RMPI 326
Query: 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 229
SS K GH LGA GA+EA ++ ++ G TLNL + DP + ++++
Sbjct: 327 SSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACGALDYIMGEAREIDTE 386
Query: 230 AALSNSFGFGGTNASLLF 247
+SN+F FGG N SL+F
Sbjct: 387 YVMSNNFAFGGINTSLIF 404
|
Length = 405 |
| >gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 4e-49
Identities = 85/269 (31%), Positives = 123/269 (45%), Gaps = 32/269 (11%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ TAC++ ++ A + ++ G+ D+ + GG + GF K+ L+
Sbjct: 161 GPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS---- 216
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMS--GDAHHIT 106
P RPFD DG+ L A + G +IYA +RG ++ G IT
Sbjct: 217 --PDGRCRPFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGIT 274
Query: 107 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS-DHATSG 165
P G+ + RA ++G+ +DYV AH T TPLGD +E A+ VF +
Sbjct: 275 APS--GEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQ 332
Query: 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTA--- 222
L S K IGHL AAG I VL + HGV P L+ P+P + PL
Sbjct: 333 PLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTE 392
Query: 223 -----SKDMPISAALSNSFGFGGTNASLL 246
+ P A + +SFGFGGTNA ++
Sbjct: 393 ARPWPAPAGPRRAGV-SSFGFGGTNAHVI 420
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. Length = 421 |
| >gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 7e-44
Identities = 93/259 (35%), Positives = 130/259 (50%), Gaps = 18/259 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP V ACAT ++ A I+ G +D++V GG E ++ ++GF AL+T
Sbjct: 153 GPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLE-EGLSGFANMGALSTAEE 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+E SRPFD RDGF E A RGA IY V G + D + P
Sbjct: 212 E-PEEMSRPFDETRDGFVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVP 270
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
GKG A+ AL ++GL +D ++AH TSTP D E+ AI V L
Sbjct: 271 -AGGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALG--APLP 327
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD-MP 227
++ K GH GAAGA++ I A+ ++ HG+ P T NL DP + + +
Sbjct: 328 VTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLK 387
Query: 228 ISAALSNSFGFGGTNASLL 246
+ AAL N+FGFGG+NA+L+
Sbjct: 388 VRAALVNAFGFGGSNAALV 406
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. Length = 407 |
| >gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-41
Identities = 85/252 (33%), Positives = 124/252 (49%), Gaps = 24/252 (9%)
Query: 9 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRAL-TTKYNGTPQEAS 67
A A+G ++ AAR++Q G D +A G + A+ + ++ P+ A
Sbjct: 166 ASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAAC 225
Query: 68 RPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGA 115
RPFD RDGF E A++RGA+ YA++ G+ M DA+ P ++G+
Sbjct: 226 RPFDQDRDGFIYGEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSLEGEMR 285
Query: 116 ILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGA 175
+ AL+++GL +DYVN H T +PLGD E A+ HA ++TK
Sbjct: 286 --VIRAALRRAGLGPEDIDYVNPHGTGSPLGDETELAALFASGLAHAW-----INATKSL 338
Query: 176 IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP-DPIFNDNFMPLTASKDMPISAALSN 234
GH L AAG VE I +L + G + NL +P D F ++ TA I ALS
Sbjct: 339 TGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERF--RWVGSTAES-ARIRYALSL 395
Query: 235 SFGFGGTNASLL 246
SFGFGG N +L+
Sbjct: 396 SFGFGGINTALV 407
|
Length = 410 |
| >gnl|CDD|217236 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-41
Identities = 53/118 (44%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Query: 90 YAEVRGYGMSGD-AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148
YA +RG ++ D A H +G A+ AL +GL VDYV AH T TPLGD
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNL 206
+EA A++ VF S L S K IGHL AAG I AVL + HGV P TLNL
Sbjct: 61 IEAEALKAVFGPGRDSQPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNL 118
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 119 |
| >gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-36
Identities = 86/258 (33%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP + ACA H++ AA +Q G D+++AGG+E + T
Sbjct: 87 GPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALST---- 142
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASR FD DGF ELEHA RGA IYAE+ G + D +
Sbjct: 143 --PEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAF 200
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G A AL +GL +DY+ AH T TP+GD E +R+ F D S A
Sbjct: 201 APSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGDK----SPA 256
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK G+L AA + AVL + HG P ++++ + D +T + +
Sbjct: 257 VSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDE---AGLNIVTETTPREL 313
Query: 229 SAALSNSFGFGGTNASLL 246
AL N FG GGTNA+L+
Sbjct: 314 RTALLNGFGLGGTNATLV 331
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). Length = 332 |
| >gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 4e-31
Identities = 82/268 (30%), Positives = 119/268 (44%), Gaps = 37/268 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ TAC++ ++ A + ++ G+ D+ +AGG + S F L+
Sbjct: 165 GPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS---- 220
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAH--HIT 106
P + FD DG+ L A++ G +IYA +RG ++ D +T
Sbjct: 221 --PDGRCKAFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLT 278
Query: 107 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGS 166
P + + + AL +G+ V YV AH T TPLGD +EA A+ V+ + A +
Sbjct: 279 AP--NLEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEANALGAVYGEGAPAQP 336
Query: 167 LAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFM-------- 218
A S K IGHL AAG I L + HG P TL+ P+P +F
Sbjct: 337 CAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNP--EIDFDSSPFVVPT 394
Query: 219 ---PLTASKDMPISAALSNSFGFGGTNA 243
P P A +S SFGFGGTNA
Sbjct: 395 EATPWPTGGG-PRRAGVS-SFGFGGTNA 420
|
Length = 1061 |
| >gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 84/267 (31%), Positives = 114/267 (42%), Gaps = 34/267 (12%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N ACA +I A + G S++M+ GG + F K+ A TT
Sbjct: 197 GMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFTT--- 253
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAH--HIT 106
E +PFD G LE A++ G +IYA ++G G S D I
Sbjct: 254 ---NEDIQPFDIDSKGMMIGEGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIY 310
Query: 107 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS-DHATSG 165
P +G+ A+ RA +G H + AH T T GD E + +VFS D+
Sbjct: 311 APRPEGQAK--ALKRAYDDAGFAPHTCGLIEAHGTGTAAGDVAEFGGLVSVFSQDNDQKQ 368
Query: 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMP------ 219
+A S K IGH AG I AVL +HH V P T+N+ +P+P + P
Sbjct: 369 HIALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTE 428
Query: 220 ----LTASKDMPISAALSNSFGFGGTN 242
+ P A +S SFGFGGTN
Sbjct: 429 TRPWMQREDGTPRRAGIS-SFGFGGTN 454
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582 |
| >gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 1e-23
Identities = 69/246 (28%), Positives = 99/246 (40%), Gaps = 51/246 (20%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP ++ ACATG ++ A + +Q G +D+++AGG+E + A A +
Sbjct: 59 GPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEEFVFGDGAA------AAVVE-- 110
Query: 61 GTPQEASRPFDCGRDGFELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMT 120
EHA +RGA AE+ + D + P + G+G A
Sbjct: 111 -----------------SEEHALRRGAHPQAEIVSTAATFDGASM-VPAVSGEGLARAAR 152
Query: 121 RALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLL 180
+AL+ +GL +DYV AH T TP+GD VE S A S+T GH L
Sbjct: 153 KALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVR----SPAVSATLIMTGHPL 208
Query: 181 GAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGG 240
GAAG +L + H P T L FG GG
Sbjct: 209 GAAGLAILDELLLMLEHEFIPPT---------------------PREPRTVLLLGFGLGG 247
Query: 241 TNASLL 246
TNA+++
Sbjct: 248 TNAAVV 253
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. Length = 254 |
| >gnl|CDD|238428 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 7e-20
Identities = 71/264 (26%), Positives = 112/264 (42%), Gaps = 35/264 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ V A G ++ A R+++ G + ++V+GG +S++ S L+T +
Sbjct: 152 GPSGVVVAEQAGGLDALAQARRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--S 208
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P A PFD G+ + A++RGA++Y E+ GY + D P
Sbjct: 209 DDPARAYLPFDAAAAGYVPGEGGAILVLEDAAAARERGARVYGEIAGYAATFDP-----P 263
Query: 109 HIDGKGAIL--AMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGS 166
G+ L A+ AL +GL VD V A A P D EA A+ VF
Sbjct: 264 PGSGRPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFG----PRG 319
Query: 167 LAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM 226
+ ++ K G L ++ A+L + GV P T+N+ P + L
Sbjct: 320 VPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAY-----GLDLVTGR 374
Query: 227 PISAALSNSF----GFGGTNASLL 246
P AAL + G GG N++L+
Sbjct: 375 PRPAALRTALVLARGRGGFNSALV 398
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. Length = 399 |
| >gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-14
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAA-RMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKY 59
GP+ TAC++ AA R I+ G+ D+ +AGG E+ + AGF + AL +
Sbjct: 155 GPSVTVDTACSSS-LVALHAAVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSPD 213
Query: 60 NGTPQEASRPFDCGRDGF 77
P +A PF DGF
Sbjct: 214 G--PCKAFDPFA---DGF 226
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 |
| >gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Score = 68.5 bits (169), Expect = 1e-13
Identities = 62/261 (23%), Positives = 93/261 (35%), Gaps = 82/261 (31%)
Query: 8 TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS 67
TAC++ ++ A + ++ G+ D+ +AGG + + G ++ L +P
Sbjct: 95 TACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGLSRAGML------SPDGRC 148
Query: 68 RPFDCGRDGF---E---------LEHAKKRGAKIYAEVRGYGM--SGDAHHITQPHIDGK 113
+ FD DG+ E L A + G I A +RG + G ++ IT P +
Sbjct: 149 KTFDASADGYVRGEGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGITAPSGPAQ 208
Query: 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK 173
I GS+ K
Sbjct: 209 LLI------------------------------------------------GSV-----K 215
Query: 174 GAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI---FNDNFMPLT-----ASKD 225
IGHL AAG I VL + HGV P TL+ P+P T
Sbjct: 216 SNIGHLEAAAGVAGLIKVVLALKHGVIPPTLHFETPNPHIDLEESPLRVPTELTPWPPPG 275
Query: 226 MPISAALSNSFGFGGTNASLL 246
P A + +SFGFGGTNA ++
Sbjct: 276 RPRRAGV-SSFGFGGTNAHVI 295
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 298 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 8e-07
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 9 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASR 68
C +G ++ AA+ I G++DV+VAGG ES +S A + +A G
Sbjct: 83 VCGSGLQAVALAAQSIAAGEADVVVAGGVES----MSRAPYLLPKARRGGRLGLNTLDGM 138
Query: 69 PFDCGRDGFELEH 81
D D F
Sbjct: 139 LDDGLTDPFTGLS 151
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ AA+ I+ GD+D++VAGG ES
Sbjct: 88 CGSGLKAVALAAQAIRAGDADIVVAGGQES 117
|
Length = 393 |
| >gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
CA+G ++ AA I+ G++DVM+A G ES
Sbjct: 95 CASGLQAVAMAADRIRVGEADVMIAAGVES 124
|
Length = 399 |
| >gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 9 ACATGAHSIGDAARMIQFGDSDVMVAGGTESS 40
CA+G ++ AA++I+ G++DV+VAGG ES
Sbjct: 82 QCASGLQAVILAAQLIRAGEADVVVAGGVESM 113
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation [Fatty acid and phospholipid metabolism, Other]. Length = 386 |
| >gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 22/111 (19%)
Query: 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY--VN 137
+ KK G K A++R +G +G P I GKG + A +AL+++GL +D +N
Sbjct: 264 KAVKKYGLKPMAKIRSFGFAG-----VPPAIMGKGPVPASKKALEKAGLSVKDIDLWEIN 318
Query: 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG---AIGHLLGAAGA 185
EA A+ +++ + KG AIGH LGA GA
Sbjct: 319 ------------EAFAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGATGA 357
|
Length = 394 |
| >gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 9 ACATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ AA+ I+ GD+D++VAGG ES
Sbjct: 85 VCGSGLKAVALAAQAIRAGDADIVVAGGVES 115
|
Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase. Length = 262 |
| >gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 139
E AK+ G K A + GY ++G P I G G + A+ +ALK++GL +D + +
Sbjct: 257 EKAKELGLKPLARIVGYAVAGVD-----PAIMGIGPVPAIPKALKRAGLTLDDIDLIEIN 311
Query: 140 ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGAAGA 185
EA A + + L K GAI GH LGA+GA
Sbjct: 312 ----------EAFAAQALACLKE----LGLDPEKVNVNGGAIALGHPLGASGA 350
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. Length = 386 |
| >gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 9 ACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 43
ACA+G ++ AA+ I G++DV++AGG E DA
Sbjct: 91 ACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDA 125
|
Length = 392 |
| >gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ AA +Q G +DV++AGG ES
Sbjct: 88 CGSGLQAVITAAMQVQTGAADVVIAGGAES 117
|
Length = 404 |
| >gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 13 GAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGT---PQEASRP 69
GA ++ A R+I G ++ G +S + ++A + L T N P EA+
Sbjct: 136 GAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAA 195
Query: 70 FDCGRDGFELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH---IDGKGAILAMTRALKQS 126
GR + G + G G+ + + + + G G A+ AL ++
Sbjct: 196 VLLGRPA----GGEAPGLPLL----GLGLGREPAPVGESEDLPLRGDGLTQAIRAALAEA 247
Query: 127 GLQSHQVDYV 136
G +DY
Sbjct: 248 GCGLEDMDYR 257
|
Length = 348 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 251 | |||
| PRK14691 | 342 | 3-oxoacyl-(acyl carrier protein) synthase II; Prov | 100.0 | |
| PLN02787 | 540 | 3-oxoacyl-[acyl-carrier-protein] synthase II | 100.0 | |
| COG0304 | 412 | FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li | 100.0 | |
| KOG1394 | 440 | consensus 3-oxoacyl-(acyl-carrier-protein) synthas | 100.0 | |
| PRK08722 | 414 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK07910 | 418 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK06333 | 424 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PLN02836 | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase | 100.0 | |
| PTZ00050 | 421 | 3-oxoacyl-acyl carrier protein synthase; Provision | 100.0 | |
| PRK07967 | 406 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 100.0 | |
| PRK07314 | 411 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00832 | 399 | CLF Chain-length factor (CLF) is a factor required | 100.0 | |
| PRK09116 | 405 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK08439 | 406 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| PRK05952 | 381 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| COG3321 | 1061 | Polyketide synthase modules and related proteins [ | 100.0 | |
| PRK06501 | 425 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| TIGR03150 | 407 | fabF beta-ketoacyl-acyl-carrier-protein synthase I | 100.0 | |
| cd00828 | 407 | elong_cond_enzymes "elongating" condensing enzymes | 100.0 | |
| cd00834 | 406 | KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) | 100.0 | |
| PRK07103 | 410 | polyketide beta-ketoacyl:acyl carrier protein synt | 100.0 | |
| PRK09185 | 392 | 3-oxoacyl-(acyl carrier protein) synthase I; Revie | 100.0 | |
| smart00825 | 424 | PKS_KS Beta-ketoacyl synthase. The structure of be | 100.0 | |
| cd00833 | 421 | PKS polyketide synthases (PKSs) polymerize simple | 100.0 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 100.0 | |
| PRK06519 | 398 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 100.0 | |
| cd00825 | 332 | decarbox_cond_enzymes decarboxylating condensing e | 100.0 | |
| PRK06147 | 348 | 3-oxoacyl-(acyl carrier protein) synthase; Validat | 99.97 | |
| PF02801 | 119 | Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina | 99.96 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 99.93 | |
| PRK13359 | 400 | beta-ketoadipyl CoA thiolase; Provisional | 99.91 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.9 | |
| TIGR02430 | 400 | pcaF beta-ketoadipyl CoA thiolase. Members of this | 99.9 | |
| PRK07516 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK09050 | 401 | beta-ketoadipyl CoA thiolase; Validated | 99.89 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 99.89 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 99.88 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 99.88 | |
| TIGR02445 | 385 | fadA fatty oxidation complex, beta subunit FadA. T | 99.87 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| PRK07661 | 391 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 99.87 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 99.87 | |
| PRK08947 | 387 | fadA 3-ketoacyl-CoA thiolase; Reviewed | 99.87 | |
| PRK08242 | 402 | acetyl-CoA acetyltransferase; Validated | 99.86 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 99.86 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 99.86 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 99.86 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 99.86 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 99.86 | |
| PTZ00455 | 438 | 3-ketoacyl-CoA thiolase; Provisional | 99.86 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 99.86 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 99.85 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 99.85 | |
| PRK06158 | 384 | thiolase; Provisional | 99.85 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 99.85 | |
| PRK06289 | 403 | acetyl-CoA acetyltransferase; Provisional | 99.85 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 99.85 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 99.84 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 99.84 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 99.84 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 99.84 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 99.83 | |
| PRK06690 | 361 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 99.83 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| KOG1390 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.82 | |
| PRK06025 | 417 | acetyl-CoA acetyltransferase; Provisional | 99.82 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 99.81 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 99.8 | |
| KOG1406 | 408 | consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44 | 99.76 | |
| KOG1389 | 435 | consensus 3-oxoacyl CoA thiolase [Lipid transport | 99.72 | |
| COG0183 | 392 | PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis | 99.69 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 99.67 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 99.64 | |
| KOG1391 | 396 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.64 | |
| PRK08257 | 498 | acetyl-CoA acetyltransferase; Validated | 99.63 | |
| PF02803 | 123 | Thiolase_C: Thiolase, C-terminal domain; InterPro: | 99.62 | |
| KOG1392 | 465 | consensus Acetyl-CoA acetyltransferase [Lipid tran | 99.59 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.4 | |
| PF00109 | 254 | ketoacyl-synt: Beta-ketoacyl synthase, N-terminal | 99.37 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.24 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 99.21 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.2 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 99.07 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 99.04 | |
| cd00830 | 320 | KAS_III Ketoacyl-acyl carrier protein synthase III | 99.02 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 98.98 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 98.97 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 98.96 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 98.94 | |
| PRK06840 | 339 | hypothetical protein; Validated | 98.83 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 98.75 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 98.73 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 98.67 | |
| PRK05963 | 326 | 3-oxoacyl-(acyl carrier protein) synthase II; Revi | 98.53 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 98.46 | |
| TIGR01835 | 379 | HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt | 98.33 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 98.25 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 98.19 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 98.13 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 97.98 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 97.94 | |
| PLN03169 | 391 | chalcone synthase family protein; Provisional | 97.93 | |
| COG3425 | 377 | PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi | 97.9 | |
| PLN03171 | 399 | chalcone synthase-like protein; Provisional | 97.84 | |
| PLN03170 | 401 | chalcone synthase; Provisional | 97.78 | |
| PLN02854 | 521 | 3-ketoacyl-CoA synthase | 97.74 | |
| PF08541 | 90 | ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC | 97.74 | |
| PLN03173 | 391 | chalcone synthase; Provisional | 97.61 | |
| PF08545 | 80 | ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP) | 97.51 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 97.48 | |
| PLN02577 | 459 | hydroxymethylglutaryl-CoA synthase | 97.29 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 97.27 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 97.22 | |
| COG3424 | 356 | BcsA Predicted naringenin-chalcone synthase [Secon | 95.38 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 94.57 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 94.31 | |
| TIGR01833 | 454 | HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth | 93.12 | |
| PRK06065 | 392 | acetyl-CoA acetyltransferase; Provisional | 92.04 | |
| PRK12578 | 385 | acetyl-CoA acetyltransferase; Provisional | 91.26 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 91.19 | |
| PRK08170 | 426 | acetyl-CoA acetyltransferase; Provisional | 91.04 | |
| PRK06059 | 399 | lipid-transfer protein; Provisional | 91.0 | |
| PRK06158 | 384 | thiolase; Provisional | 90.78 | |
| PRK05790 | 393 | putative acyltransferase; Provisional | 90.34 | |
| PF07451 | 329 | SpoVAD: Stage V sporulation protein AD (SpoVAD); I | 89.77 | |
| PRK06205 | 404 | acetyl-CoA acetyltransferase; Provisional | 89.4 | |
| PRK06157 | 398 | acetyl-CoA acetyltransferase; Validated | 89.31 | |
| PRK08304 | 337 | stage V sporulation protein AD; Validated | 89.29 | |
| cd00327 | 254 | cond_enzymes Condensing enzymes; Family of enzymes | 89.24 | |
| PRK09051 | 394 | beta-ketothiolase; Provisional | 88.86 | |
| PLN02644 | 394 | acetyl-CoA C-acetyltransferase | 88.81 | |
| TIGR02845 | 327 | spore_V_AD stage V sporulation protein AD. Bacillu | 88.55 | |
| PF13723 | 218 | Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina | 88.29 | |
| PRK07801 | 382 | acetyl-CoA acetyltransferase; Provisional | 88.22 | |
| PRK06954 | 397 | acetyl-CoA acetyltransferase; Provisional | 88.22 | |
| PRK08256 | 391 | lipid-transfer protein; Provisional | 87.96 | |
| PRK06365 | 430 | acetyl-CoA acetyltransferase; Provisional | 87.92 | |
| PRK08235 | 393 | acetyl-CoA acetyltransferase; Provisional | 87.65 | |
| CHL00203 | 326 | fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr | 87.36 | |
| PRK08313 | 386 | acetyl-CoA acetyltransferase; Provisional | 87.04 | |
| PLN02932 | 478 | 3-ketoacyl-CoA synthase | 87.02 | |
| PRK08142 | 388 | acetyl-CoA acetyltransferase; Provisional | 86.83 | |
| TIGR00747 | 318 | fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | 86.48 | |
| PRK07937 | 352 | lipid-transfer protein; Provisional | 86.4 | |
| PRK05656 | 393 | acetyl-CoA acetyltransferase; Provisional | 86.28 | |
| PRK12404 | 334 | stage V sporulation protein AD; Provisional | 86.25 | |
| PRK09052 | 399 | acetyl-CoA acetyltransferase; Provisional | 86.25 | |
| PF00108 | 264 | Thiolase_N: Thiolase, N-terminal domain; InterPro: | 86.14 | |
| PF01154 | 174 | HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s | 86.08 | |
| PRK09258 | 338 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 86.04 | |
| PLN03168 | 389 | chalcone synthase; Provisional | 86.0 | |
| PLN02287 | 452 | 3-ketoacyl-CoA thiolase | 85.94 | |
| PLN02377 | 502 | 3-ketoacyl-CoA synthase | 85.9 | |
| PRK06445 | 394 | acetyl-CoA acetyltransferase; Provisional | 85.9 | |
| TIGR01930 | 386 | AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi | 85.88 | |
| PRK06366 | 388 | acetyl-CoA acetyltransferase; Provisional | 85.74 | |
| COG0533 | 342 | QRI7 Metal-dependent proteases with possible chape | 85.63 | |
| PRK12880 | 353 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 85.58 | |
| PRK07204 | 329 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 85.49 | |
| PRK07851 | 406 | acetyl-CoA acetyltransferase; Provisional | 85.48 | |
| PRK07855 | 386 | lipid-transfer protein; Provisional | 84.58 | |
| PRK06066 | 385 | acetyl-CoA acetyltransferase; Provisional | 84.55 | |
| PRK09352 | 319 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 84.55 | |
| PRK06504 | 390 | acetyl-CoA acetyltransferase; Provisional | 84.41 | |
| PRK09268 | 427 | acetyl-CoA acetyltransferase; Provisional | 84.13 | |
| cd00751 | 386 | thiolase Thiolase are ubiquitous enzymes that cata | 84.05 | |
| PRK12879 | 325 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 83.97 | |
| PF08392 | 290 | FAE1_CUT1_RppA: FAE1/Type III polyketide synthase- | 83.82 | |
| PRK08131 | 401 | acetyl-CoA acetyltransferase; Provisional | 83.58 | |
| PLN02192 | 511 | 3-ketoacyl-CoA synthase | 83.51 | |
| PRK08963 | 428 | fadI 3-ketoacyl-CoA thiolase; Reviewed | 83.5 | |
| cd00831 | 361 | CHS_like Chalcone and stilbene synthases; plant-sp | 83.35 | |
| PRK06816 | 378 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 83.13 | |
| PRK04262 | 347 | hypothetical protein; Provisional | 83.09 | |
| TIGR00748 | 345 | HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase | 82.83 | |
| PLN02326 | 379 | 3-oxoacyl-[acyl-carrier-protein] synthase III | 82.59 | |
| PRK07850 | 387 | acetyl-CoA acetyltransferase; Provisional | 82.48 | |
| cd00826 | 393 | nondecarbox_cond_enzymes nondecarboxylating conden | 82.37 | |
| TIGR02446 | 430 | FadI fatty oxidation complex, beta subunit FadI. T | 81.81 | |
| PRK07515 | 372 | 3-oxoacyl-(acyl carrier protein) synthase III; Rev | 81.72 | |
| PLN03172 | 393 | chalcone synthase family protein; Provisional | 81.38 | |
| COG0332 | 323 | FabH 3-oxoacyl-[acyl-carrier-protein] | 81.34 | |
| cd00827 | 324 | init_cond_enzymes "initiating" condensing enzymes | 81.01 | |
| PLN00415 | 466 | 3-ketoacyl-CoA synthase | 80.93 | |
| PRK07108 | 392 | acetyl-CoA acetyltransferase; Provisional | 80.86 | |
| cd00829 | 375 | SCP-x_thiolase Thiolase domain associated with ste | 80.67 | |
| PRK06840 | 339 | hypothetical protein; Validated | 80.46 | |
| PRK06064 | 389 | acetyl-CoA acetyltransferase; Provisional | 80.41 | |
| PRK06633 | 392 | acetyl-CoA acetyltransferase; Provisional | 80.33 | |
| PF09663 | 365 | Amido_AtzD_TrzD: Amidohydrolase ring-opening prote | 80.09 |
| >PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-56 Score=376.41 Aligned_cols=246 Identities=52% Similarity=0.823 Sum_probs=228.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||..|+++|++|++|++||||+|..+++..+..|..++.++...+.+|+..|+|||.+++|+
T Consensus 82 Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~g 161 (342)
T PRK14691 82 GPIGAPVTACAAGVQAIGDAVRMIRNNEADVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDGFVMG 161 (342)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCCCcccc
Confidence 89999999999999999999999999999999999999999999899999999998655667889999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|.++|++|+|++..+|+.+...+.+++.+..++++++|+++||+|+||||||+|||||+.+|.
T Consensus 162 EGAa~lvLes~~~A~~rG~~i~a~I~g~~~~~d~~~~~~p~p~~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~ 241 (342)
T PRK14691 162 EGAGLLIIEELEHALARGAKPLAEIVGYGTSADAYHMTSGAEDGDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDL 241 (342)
T ss_pred ceEEEEEEeeHHHHHhCCCCceEEEEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcCCCH
Confidence 67889999999999999999999998877778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC-CCCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF-NDNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (251)
+|..||+++|+.. .++||++.|+++||+++|+|+++++.++++|++++|||++|+++|+|++ .+++++ ...++.+
T Consensus 242 ~E~~Ai~~~fg~~---~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ippt~n~~~~d~~~~~~~~v~-~~~~~~~ 317 (342)
T PRK14691 242 GEINAIKHLFGES---NALAITSTKSATGHLLGAAGGLETIFTVLALRDQIVPATLNLENPDPAAKGLNIIA-GNAQPHD 317 (342)
T ss_pred HHHHHHHHHhCCC---CCceEECCcccccCCcchhhHHHHHHHHHHHhCCccCCcCCCCCCCccccccCccc-CCCccCC
Confidence 9999999999853 2489999999999999999999999999999999999999999999988 477776 4445556
Q ss_pred CcEEEEecccccceeeeeEeeec
Q 040515 228 ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+++|+|+|||||+|+++||++|
T Consensus 318 ~~~al~nsfgfGG~n~~lvl~~~ 340 (342)
T PRK14691 318 MTYALSNGFGFAGVNASILLKRW 340 (342)
T ss_pred CCEEEEeCccCCCeeEEEEEeec
Confidence 89999999999999999999987
|
|
| >PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=388.69 Aligned_cols=247 Identities=48% Similarity=0.741 Sum_probs=229.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||.+|+++|++|++|++||||+|..+.+..+..|..++.++.. +.+|+..|+|||.+++|+
T Consensus 282 Gp~~tistACASs~~Ai~~A~~~Ir~G~aD~aLvGG~d~~l~p~~~~~f~~~~aLS~~-~~~p~~~~rPFD~~rdGfv~G 360 (540)
T PLN02787 282 GPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDAAIIPIGLGGFVACRALSQR-NDDPTKASRPWDMNRDGFVMG 360 (540)
T ss_pred CCccccccccccHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHHHHHHhhcc-CCCcccccCCcccCCCCcccc
Confidence 8999999999999999999999999999999999999998999999999999998854 556788999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|++||++|+|++.++|+++++.|.+++.++.++|++||+++|++|+|||||++|||||+.+|.
T Consensus 361 EGAa~lVLE~~e~A~~rGa~IyA~I~G~g~s~Da~~~t~p~p~g~g~~~am~~AL~~AGl~p~dIdyInaHGTGT~~gD~ 440 (540)
T PLN02787 361 EGAGVLLLEELEHAKKRGANIYAEFLGGSFTCDAYHMTEPHPEGAGVILCIEKALAQSGVSKEDVNYINAHATSTKAGDL 440 (540)
T ss_pred cceEEEEEeeHHHHHHCCCeeEEEEEEEEEecCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHHHCcEEEccCccCCCCCH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..||.++|+.. .++||++.|+++||+++|+|++++++++++|+++.|||++|+++|++.++++++.....++.+.
T Consensus 441 ~E~~Ai~~~Fg~~---~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal~~g~iPPt~n~~~pd~~~~~~~~v~~~~~~~~i 517 (540)
T PLN02787 441 KEYQALMRCFGQN---PELRVNSTKSMIGHLLGAAGAVEAIATVQAIRTGWVHPNINLENPESGVDTKVLVGPKKERLDI 517 (540)
T ss_pred HHHHHHHHHhCCC---CCceeeCCCCCcCCCcccchHHHHHHHHHHHhcCCcCCCCCCCCCCccCCcccccccccccCCc
Confidence 9999999999853 2489999999999999999999999999999999999999999999999887754234444568
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+.+|+|+|||||+|+++||++|+
T Consensus 518 r~aL~nSfGFGG~Naslvl~~~~ 540 (540)
T PLN02787 518 KVALSNSFGFGGHNSSILFAPYK 540 (540)
T ss_pred CEEEEeeecCCceeEEEEEEeCC
Confidence 99999999999999999999985
|
|
| >COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=373.15 Aligned_cols=247 Identities=57% Similarity=0.918 Sum_probs=234.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||++++.++|+||..||..|+++|+.|++|++||||+|..+++.....|..++.++.. +++|...++|||++++||
T Consensus 153 G~~~~~~tACatg~~AIg~A~~~I~~G~ad~~iaGG~e~~i~~~~i~gF~am~Alst~-nd~p~~asrPfd~~RdGfv~g 231 (412)
T COG0304 153 GPNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKASRPFDKNRDGFVIG 231 (412)
T ss_pred CCcCChhhhHHhHHHHHHHHHHHHHcCCCCEEEEcccccccCHHHHHHHHHHHHhccC-CCCccccCCCCCCCCCCEEEe
Confidence 8999999999999999999999999999999999999999999999999999999988 889999999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++|+|++||++||++|.|++..+|+++++.|.|++.+..++|+.||++||++|+|||||.+|||+|+.+|.
T Consensus 232 EGag~lVLE~~ehA~aRGA~Iyaei~G~g~~~Da~h~t~P~p~g~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~ 311 (412)
T COG0304 232 EGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDK 311 (412)
T ss_pred cceeEEEecChhhHHhCCCceEEEEEEEEecccccccCCCCCCCchHHHHHHHHHHHcCCCHhHCCEEeCCCccCCCccH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC-CCCCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI-FNDNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~-~~~~~~~~~~~~~~~ 227 (251)
.|..+++++|+..... ++|.+.|+.+||++||+|..+.+.++++|+++++||++|++.|+|+ +++++++ ...+...
T Consensus 312 ~E~~ai~~vfg~~~~~--~~vsstKs~tGH~lGAaGaveai~~~l~l~~g~ippt~n~~~~dp~~~~l~~v~-~~~~~~~ 388 (412)
T COG0304 312 AESLAIKRVFGEHAKS--LPVSSTKSLTGHTLGAAGAVEAIISLLALRDGIIPPTINLDNPDPEAADLDVVP-NEARTGA 388 (412)
T ss_pred HHHHHHHHHhcccccC--ceeeecccccccChhhHHHHHHHHHHHHHhcCCcCCCCCcCCCCcccccccccC-Ccccccc
Confidence 9999999999976544 8999999999999999999999999999999999999999999987 6788888 4444344
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.++++.|+|||||+|+++|+++|+
T Consensus 389 ~~~~lsnsfGFGG~Na~lv~~~~~ 412 (412)
T COG0304 389 VRAALSNSFGFGGTNASLVFKRYQ 412 (412)
T ss_pred eeEEEecccccCCcceEEEEecCC
Confidence 899999999999999999999985
|
|
| >KOG1394 consensus 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=358.54 Aligned_cols=248 Identities=65% Similarity=1.009 Sum_probs=233.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|++|..+|..|.+.|+.|++|++|+||.|..+.|..+.+|.+.+.|+.+ ++.|...+||||..++||
T Consensus 178 GpnhsvSTACATg~h~igda~n~Ir~GdaDvmlAGgsE~~I~PlslaGF~r~RALSt~-nd~P~~aSRPfD~~RdGFVmG 256 (440)
T KOG1394|consen 178 GPNHSVSTACATGNHCIGDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTR-NDNPQKASRPFDKKRDGFVMG 256 (440)
T ss_pred CCchhhHhhhhhccchHHHHHHHHHhCccceeeccCcceeecchhhhhHHHHHHhhhc-CCCccccCCCCccCCCceeec
Confidence 8999999999999999999999999999999999999999999999999999999987 888999999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++|+|++||++||+++.|++.++|.+|++.|++++.+...+|.++|++|||.|+|||||.+|+|.|+.+|.
T Consensus 257 EGagvlvlEelEHA~~RgA~I~AE~lGygls~Da~HiT~P~~dG~Ga~~am~raL~~Agl~pe~i~YvNAHATST~~GD~ 336 (440)
T KOG1394|consen 257 EGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPEDIDYVNAHATSTPLGDA 336 (440)
T ss_pred cceeEEehHhHHHHHHcCCceeHHhhcCcccccccccCCCCCCcchHHHHHHHHHHHcCCChhhcCeeecccccCcCchH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCcccc--C-CC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTA--S-KD 225 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~--~-~~ 225 (251)
+|..|+.++|++.... .+|.+.|+.+||.+||+|.++-+..+++++++++||++|++.|++.++.+++|... + ..
T Consensus 337 aE~~Ai~~vf~~~~~~--~~vsStKgaiGHLLGAAGavEAi~Tv~ai~~~~lpptlNlen~d~~~d~~~~~~~~~~~~~~ 414 (440)
T KOG1394|consen 337 AEAEAIKRVFGEHNIA--SKVSSTKGAIGHLLGAAGAVEAIFTVLAINDGVLPPTLNLENPDPGVDLDYVPLKASEKKGG 414 (440)
T ss_pred HHHHHHHHHhccCCcc--cccccccchhhhhcccccchhhHhhhhhhhcCccCCcccccCCCcccccccccccccccccc
Confidence 9999999999987654 48999999999999999999999999999999999999999999988888655322 2 22
Q ss_pred CCCcEEEEecccccceeeeeEeeecC
Q 040515 226 MPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.+.+.++.|||||||+|+++++.+|+
T Consensus 415 ~~~~valsNSFGFGGtNaSl~fa~~~ 440 (440)
T KOG1394|consen 415 NKVRVALSNSFGFGGTNASLCFAKFK 440 (440)
T ss_pred ccceEEEecccccCCcchhheeeecC
Confidence 45789999999999999999999874
|
|
| >PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-54 Score=374.88 Aligned_cols=247 Identities=52% Similarity=0.858 Sum_probs=226.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||.+|+++|++|++|++||||+|...++..+..|..++.++.. +.+|+..|+|||.+++|+
T Consensus 155 Gp~~ti~~aCas~~~Al~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~-~~~p~~~~rpfd~~~~G~~~g 233 (414)
T PRK08722 155 GPNIAISTACTTGLHNIGHAARMIAYGDADAMVAGGAEKASTPLGMAGFGAAKALSTR-NDEPQKASRPWDKDRDGFVLG 233 (414)
T ss_pred CCccccccccHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHcCCcccC-CCCCccccCcCcCCCCceEee
Confidence 8999999999999999999999999999999999999998899889999999988743 456778999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.+.+....++++++|+++||+|+||||||+|||||+.+|.
T Consensus 234 EGaaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~ 313 (414)
T PRK08722 234 DGAGMMVLEEYEHAKARGAKIYAELVGFGMSGDAYHMTSPSEDGSGGALAMEAAMRDAGVTGEQIGYVNAHGTSTPAGDV 313 (414)
T ss_pred ceEEEEEEccHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCcchHHHHHHHHHHHHHcCCCHHHcCEEEccCccCCCCCH
Confidence 67889999999999999999999998888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC-CC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD-MP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~-~~ 227 (251)
+|..||+++|+... ..++||++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++++++ ...+. ..
T Consensus 314 ~E~~al~~~fg~~~-~~~~~v~s~K~~~GH~~~AaG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~~~v~-~~~~~~~~ 391 (414)
T PRK08722 314 AEIKGIKRALGEAG-SKQVLVSSTKSMTGHLLGAAGSVEAIITVMSLVDQIVPPTINLDDPEEGLDIDLVP-HTARKVES 391 (414)
T ss_pred HHHHHHHHHhcccC-CCCceeeCcccccccchHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCC-CccccCCC
Confidence 99999999998642 22489999999999999999999999999999999999999999999999988877 33333 35
Q ss_pred CcEEEEecccccceeeeeEeeec
Q 040515 228 ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+++++|+|||||+|+|+||++.
T Consensus 392 ~~~~l~nsfGfGG~n~~lvl~~~ 414 (414)
T PRK08722 392 MEYAICNSFGFGGTNGSLIFKKM 414 (414)
T ss_pred CCEEEEecccCCCceEEEEEecC
Confidence 79999999999999999999873
|
|
| >PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=374.50 Aligned_cols=244 Identities=42% Similarity=0.682 Sum_probs=225.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhh-cccccCCCCCCcccccccCCCcc--
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRA-LTTKYNGTPQEASRPFDCGRDGF-- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~f~~~~~g~-- 77 (251)
||+++++++|+|++.||.+|+++|++|++|++||||+|..+++..+..|..++. ++.. +..|+..|+|||..++|+
T Consensus 162 G~~~ti~taCaS~~~Al~~A~~~I~~G~~d~aivgg~~~~~~~~~~~~f~~~~~~ls~~-~~~~~~~~rPFd~~~~G~v~ 240 (418)
T PRK07910 162 AGVITPVSACASGSEAIAQAWRQIVLGEADIAICGGVETRIEAVPIAGFAQMRIVMSTN-NDDPAGACRPFDKDRDGFVF 240 (418)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCccccC-CCCCCCCcCCCcCCCCCEee
Confidence 799999999999999999999999999999999999999889988889999988 6532 445778999999999999
Q ss_pred ----------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ----------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ----------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+++|+++|++|+|++.++|+.+...+.+.+.++.++++++|+++|++|+||||||+||+||+.+|
T Consensus 241 gEGaa~vvLe~~~~A~~rg~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D 320 (418)
T PRK07910 241 GEGGALMVIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAMTRAIELAGLTPGDIDHVNAHATGTSVGD 320 (418)
T ss_pred eceEEEEEEeeHHHHHhCCCcEEEEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCC
Confidence 6688999999999999999999999988888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP 227 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (251)
.+|..+++++|+.. ..++++.|+++||+++|+|++++++++++|+++++||++|+++|+|+++++.++ ..++..+
T Consensus 321 ~~E~~Al~~~fg~~----~~~v~s~K~~~GH~~~AaG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~l~~~~-~~~~~~~ 395 (418)
T PRK07910 321 VAEGKAINNALGGH----RPAVYAPKSALGHSVGAVGAVESILTVLALRDGVIPPTLNLENLDPEIDLDVVA-GEPRPGN 395 (418)
T ss_pred HHHHHHHHHHhCCC----CCceeCccccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCC-CCCcCCC
Confidence 99999999999853 257999999999999999999999999999999999999999999999988877 3444557
Q ss_pred CcEEEEecccccceeeeeEeeec
Q 040515 228 ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+++++|||||||+|+++||++|
T Consensus 396 ~~~al~nsfGfGG~N~slvl~~~ 418 (418)
T PRK07910 396 YRYAINNSFGFGGHNVALAFGRY 418 (418)
T ss_pred ccEEEEeeecCCCeeEEEEEecC
Confidence 89999999999999999999986
|
|
| >PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=373.41 Aligned_cols=247 Identities=54% Similarity=0.841 Sum_probs=229.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+||+.||..|+++|++|++|++||||+|.++++..+..|..++.++..++..|+..|+|||..++|+
T Consensus 164 Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~~~G~~~g 243 (424)
T PRK06333 164 GPLGAPVTACAAGVQAIGDAARLIRSGEADVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRDRDGFVMG 243 (424)
T ss_pred CCCccccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCCCCCeEEe
Confidence 79999999999999999999999999999999999999988988888888888888766777889999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.+.+++.++.+++++||++||++|+||||||+||+||+.+|.
T Consensus 244 EGaa~lvLe~~~~A~~rg~~i~a~i~G~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agi~p~dId~i~~hgtgt~~~D~ 323 (424)
T PRK06333 244 EGAGILVIETLEHALARGAPPLAELVGYGTSADAYHMTAGPEDGEGARRAMLIALRQAGIPPEEVQHLNAHATSTPVGDL 323 (424)
T ss_pred cceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEeccCCCCccchH
Confidence 67889999999999999999999998888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC-CCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN-DNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~-~~~~~~~~~~~~~ 227 (251)
.|..+++++|+.. .++++++.|+++||+++|+|++++++++++|++++|||++|+++|+|.++ +++++ ...+..+
T Consensus 324 ~E~~al~~~fg~~---~~~~v~s~K~~~GH~~gAaG~~~~~~~~l~l~~g~ipp~~~~~~~~~~~~~~~~~~-~~~~~~~ 399 (424)
T PRK06333 324 GEVAAIKKVFGHV---SGLAVSSTKSATGHLLGAAGGVEAIFTILALRDQIAPPTLNLENPDPAAEGLDVVA-NKARPMD 399 (424)
T ss_pred HHHHHHHHHhCCC---CCceeECcccchhhhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCcccccccc-CCCcccC
Confidence 9999999999842 35899999999999999999999999999999999999999999999987 66666 4455667
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.+++++|+|||||+|+|+||++|+
T Consensus 400 ~~~al~~s~gfGG~n~~~il~~~~ 423 (424)
T PRK06333 400 MDYALSNGFGFGGVNASILFRRWE 423 (424)
T ss_pred cCEEEEeeecCCCeeEEEEEeccC
Confidence 899999999999999999999984
|
|
| >PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=372.01 Aligned_cols=251 Identities=84% Similarity=1.252 Sum_probs=231.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||..|+++|++|++|++||||+|...++..+..|..++.++..++.+|+..++|||..++|+
T Consensus 175 Gp~~tv~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~pfd~~~~G~~~g 254 (437)
T PLN02836 175 GPNHAAVTACATGAHSIGDAFRMIQFGDADVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTEASRPFDCDRDGFVIG 254 (437)
T ss_pred CceeceeChhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHHhhhhhcccCCCcccccCCcccCCCCeeee
Confidence 89999999999999999999999999999999999999988998888898888888666666778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.+.++...+++++||++|||+|+||||||+||+||+.+|.
T Consensus 255 EGaaalVLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~a~~~Al~~Agi~~~dId~ve~hgtgt~~~D~ 334 (437)
T PLN02836 255 EGAGVLVLEELEHAKRRGAKIYAEVRGYGMSGDAHHITQPHEDGRGAVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDA 334 (437)
T ss_pred cCEEEEEEeeHHHHHHCCCceEEEEEeeeecCCCCCCcCCCcchHHHHHHHHHHHHHcCCCHhHcCEEEccCCcCcCcCH
Confidence 67889999999999999999999998888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..++.++|+.....+.+++++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++++++....+..+.
T Consensus 335 ~E~~ai~~~~~~~~~~~~~~v~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~n~~~~~p~~~~~~~~~~~~~~~~~ 414 (437)
T PLN02836 335 VEARAIKTVFSEHATSGGLAFSSTKGATGHLLGAAGAVEAIFSVLAIHHGIAPPTLNLERPDPIFDDGFVPLTASKAMLI 414 (437)
T ss_pred HHHHHHHHHhcccccCCCCeeECCcccccccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCcccCCCCCCc
Confidence 99999999998765545689999999999999999999999999999999999999999999999988777433345578
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+.+++|||||||+|+|+||++++
T Consensus 415 ~~~l~nsfgfGG~na~lvl~~~~ 437 (437)
T PLN02836 415 RAALSNSFGFGGTNASLLFTSPP 437 (437)
T ss_pred cEEEEecccCCCeeEEEEEecCC
Confidence 99999999999999999999874
|
|
| >PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=366.76 Aligned_cols=249 Identities=58% Similarity=0.921 Sum_probs=227.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+||+.||.+|+++|++|++|++||||+|.++++..+..|..++.++.....+|+..++|||.+++|+
T Consensus 159 Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~~~~G~~~g 238 (421)
T PTZ00050 159 GPSGSAVTACATGAHCIGEAFRWIKYGEADIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDKDRAGFVMG 238 (421)
T ss_pred CcccccccHhHHHHHHHHHHHHHHHcCCCCEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcCCCCCEeec
Confidence 79999999999999999999999999999999999999988888888898888887655556788999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCccEEEecCCCCcCCc
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ-SGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.+++.++.++++++|++ ||++|+||||||+||+||+.+|
T Consensus 239 EGAaalvLe~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~Al~~~Agi~~~dId~ie~hgtgt~~~D 318 (421)
T PTZ00050 239 EGAGILVLEELEHALRRGAKIYAEIRGYGSSSDAHHITAPHPDGRGARRCMENALKDGANININDVDYVNAHATSTPIGD 318 (421)
T ss_pred cceEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCChHHHHHHHHHHHHhccCCChhhCCEEECCCccCCCCC
Confidence 778899999999999999999999988888888889999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC-C
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD-M 226 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~-~ 226 (251)
.+|..++.++|+.... .+++|++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++++++...... .
T Consensus 319 ~~E~~al~~~~~~~~~-~~~~v~s~K~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~l~~~~~~~~~~~~ 397 (421)
T PTZ00050 319 KIELKAIKKVFGDSGA-PKLYVSSTKGGLGHLLGAAGAVESIVTILSLYEQIIPPTINLENPDAECDLNLVQGKTAHPLQ 397 (421)
T ss_pred HHHHHHHHHHhccccC-CCceEECccccccccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCCccccCCcccCcCC
Confidence 9999999999986431 3589999999999999999999999999999999999999999999999988877332222 2
Q ss_pred CCcEEEEecccccceeeeeEeeec
Q 040515 227 PISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 227 ~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.+++++|||||||+|+++||+++
T Consensus 398 ~~~~~l~nsfgfgG~n~~lvl~~~ 421 (421)
T PTZ00050 398 SIDAVLSTSFGFGGVNTALLFTKY 421 (421)
T ss_pred CCCEEEEeeecCCCeeEEEEEeCC
Confidence 579999999999999999999986
|
|
| >PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=361.11 Aligned_cols=240 Identities=47% Similarity=0.750 Sum_probs=215.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||.+|+++|++|++|++||||+|. ..+.....|..++.++...+.+|+..|+|||..++|+
T Consensus 153 Gp~~tvs~aCas~~~Ai~~A~~~ir~G~~d~~lvgg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~g 231 (406)
T PRK07967 153 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIA 231 (406)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeeecc-cChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeee
Confidence 899999999999999999999999999999999999997 4555566788888888665667889999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|++||++||++|+|++.++|+.+++.| ++.++.++|++||+.++ + |||||++|||||+.+|.
T Consensus 232 EGaa~lvLe~~~~A~~rga~i~a~i~G~g~~~d~~~~~~p--~~~~~~~a~~~Al~~~~--~-~Idyi~aHgtGT~~~D~ 306 (406)
T PRK07967 232 GGGGVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAP--SGEGAVRCMQMALATVD--T-PIDYINTHGTSTPVGDV 306 (406)
T ss_pred ceEEEEEEeeHHHHHhCCCcEEEEEEEEEECCCCCCCCCC--CHHHHHHHHHHHHhCCC--C-CccEEEcCCCCCCCCCH
Confidence 6688999999999999999999999887654 68899999999998654 5 99999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC-CCCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF-NDNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (251)
+|..|++++|+.. .+||+++|+++||+++|+|+.++++++++|++++|||++|+++++|++ ++++++ ...+..+
T Consensus 307 ~E~~Ai~~~fg~~----~~~v~s~K~~~GH~~~AaG~~e~i~~~lal~~~~iPpt~~~~~~~~~~~~~~~~~-~~~~~~~ 381 (406)
T PRK07967 307 KELGAIREVFGDK----SPAISATKSLTGHSLGAAGVQEAIYSLLMMEHGFIAPSANIEELDPQAAGMPIVT-ETTDNAE 381 (406)
T ss_pred HHHHHHHHHhCCC----CCeeECcccccccCccccchHHHHHHHHHHhcCcCCCCCCCCCCCccccCCCccC-CCCcCCC
Confidence 9999999999753 268999999999999999999999999999999999999999999987 566665 3334446
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.+.+++|+|||||+|+|+||++|+
T Consensus 382 ~~~~l~~sfgfGG~n~~lvl~~~~ 405 (406)
T PRK07967 382 LTTVMSNSFGFGGTNATLVFRRYK 405 (406)
T ss_pred CCEEEEecccCCCeeEEEEEEecC
Confidence 889999999999999999999985
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=415.75 Aligned_cols=244 Identities=32% Similarity=0.500 Sum_probs=221.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+||+.||++|+++|++|+||++||||++...++..+..|.+.+.++ +++.|+|||.+++||
T Consensus 197 Gps~tVdtACsSSL~Al~~A~~~L~~G~~D~alvGGv~~~~~p~~~~~fs~~~~lS------~~g~crpFD~~adG~v~G 270 (2582)
T TIGR02813 197 GMNCVVDAACAGSLAAIRMALSELLEGRSEMMITGGVCTDNSPFMYMSFSKTPAFT------TNEDIQPFDIDSKGMMIG 270 (2582)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecceeeCCHHHHHHHHhccCcC------CCCCccCCCCCCCccccc
Confidence 89999999999999999999999999999999999999999999999999999987 558899999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|++||++|+|++.++||+......|+..++.++|+++|++||++|+||+|||+|||||+.+|+
T Consensus 271 EGag~vvLkrL~dA~~dGd~IyAvI~G~g~~~DG~~~~itaP~~~gq~~~i~~Al~~Agi~p~~I~yIeaHGTGT~~gD~ 350 (2582)
T TIGR02813 271 EGIGMMALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQAKALKRAYDDAGFAPHTCGLIEAHGTGTAAGDV 350 (2582)
T ss_pred ceEEEEEeCcHHHHHhCCCcEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCCCCCH
Confidence 78999999999999999999999998544455667788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC-CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCC---------
Q 040515 149 VEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFM--------- 218 (251)
Q Consensus 149 ~E~~a~~~~~~~~~-~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~--------- 218 (251)
+|..||.++|+... ...+++|+|+|+++||+++|+|+++++|++++|++++|||++|+++|+|.++++..
T Consensus 351 ~E~~Al~~vf~~~~~~~~~~~vgSvKs~iGH~~~AAG~a~lik~~lal~~~~iPp~~~~~~pnp~~~~~~~~~~v~~~~~ 430 (2582)
T TIGR02813 351 AEFGGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGMIKAVLALHHKVLPPTINVDQPNPKLDIENSPFYLNTETR 430 (2582)
T ss_pred HHHHHHHHHhcccccCCCCceeeccccccccchHhHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccceeecCCcc
Confidence 99999999998643 23569999999999999999999999999999999999999999999999876632
Q ss_pred ccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 219 PLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 219 ~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+|.......+|+++||+|||||+|+|+||++|
T Consensus 431 pw~~~~~~~~r~a~vnsfGfGGtN~hvvlee~ 462 (2582)
T TIGR02813 431 PWMQREDGTPRRAGISSFGFGGTNFHMVLEEY 462 (2582)
T ss_pred cCcccCCCCccEEEEeCccCCCeeEEEEEeec
Confidence 22211223579999999999999999999987
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=358.00 Aligned_cols=247 Identities=61% Similarity=0.974 Sum_probs=226.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||..|+++|++|++|++||||+|.++++..+..|..++.++.+ ...|...++|||..++|+
T Consensus 153 Gp~~tv~~acaSgl~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~ls~~-~~~p~~~~~pfd~~~dG~~~g 231 (411)
T PRK07314 153 GPNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEAAITPLGIAGFAAARALSTR-NDDPERASRPFDKDRDGFVMG 231 (411)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCCEEEEeeecccCCHHHHHHHHHhccccCC-CCCCCcCcCCCcCCCCCEeEE
Confidence 7999999999999999999999999999999999999998899888888888888753 445678899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
+++.|++++.++|++|+|++.++|+.+.+.+.+....+.++++++|+++|++++||||||+||+||+.+|.
T Consensus 232 eGAaavvL~~~~~A~~~g~~~~a~I~g~~~~~d~~~~~~~~~~~~~~~~a~~~Al~~agi~~~dId~v~~hgtgt~~~d~ 311 (411)
T PRK07314 232 EGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGINPEDIDYINAHGTSTPAGDK 311 (411)
T ss_pred ceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEEccccCCccccH
Confidence 67889999999999999999999988877777778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..++.++|+... .++++++.|+++||+++|+|++++++++++|+++.|||++|+++|++.+++++++ ...+..+.
T Consensus 312 ~E~~al~~~~~~~~--~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~ 388 (411)
T PRK07314 312 AETQAIKRVFGEHA--YKVAVSSTKSMTGHLLGAAGAVEAIFSVLAIRDQVIPPTINLDNPDEECDLDYVP-NEARERKI 388 (411)
T ss_pred HHHHHHHHHhcccC--CCCeeECccchhchhHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCccccC-CcccCCCC
Confidence 99999999998532 3489999999999999999999999999999999999999999999999988887 44555678
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+++++|+|||||+|+|+||++|.
T Consensus 389 ~~al~~s~gfGG~n~~~vl~~~~ 411 (411)
T PRK07314 389 DYALSNSFGFGGTNASLVFKRYE 411 (411)
T ss_pred CEEEEecccCCCceEEEEEecCC
Confidence 99999999999999999999984
|
|
| >cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-51 Score=354.14 Aligned_cols=236 Identities=28% Similarity=0.465 Sum_probs=217.8
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||.+|+++|++|+ |++||||+|..+++..+..|..++.++. ...|...|+|||.+++|+
T Consensus 152 Gp~~ti~~acaS~~~Al~~A~~~i~~G~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~--~~~p~~~~rPFd~~~~G~~~g 228 (399)
T cd00832 152 GPSGVVVAEQAGGLDALAQARRLVRRGT-PLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAAGYVPG 228 (399)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHcCC-CeEEEEeeccccCHHHHHHHHhccccCC--CCCCCCCcCCCcCCCCCEeee
Confidence 8999999999999999999999999999 9999999999999999999999988874 345678999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|++||+++|++|+|++.++|+.+... ...++.++|+++|+++|++|+|||||++|||||+.+|.
T Consensus 229 EGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~---~~~~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~ 305 (399)
T cd00832 229 EGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPGSG---RPPGLARAIRLALADAGLTPEDVDVVFADAAGVPELDR 305 (399)
T ss_pred ceEEEEEEeeHHHHHHCCCeEEEEEEeEEEcCCCCCCCC---CHHHHHHHHHHHHHHcCCCHHHccEEEeccCcCCCCCH
Confidence 778999999999999999999999876532 47789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..+++++|+.. .+||++.|+++||+++|+|++++++++++|+++.|||++|+++|+|.+++++++ ...++.+.
T Consensus 306 ~E~~al~~~fg~~----~~pv~s~K~~~Gh~~~aaG~~~l~~~~l~l~~~~ipp~~n~~~~~p~~~l~~v~-~~~~~~~~ 380 (399)
T cd00832 306 AEAAALAAVFGPR----GVPVTAPKTMTGRLYAGGAPLDVATALLALRDGVIPPTVNVTDVPPAYGLDLVT-GRPRPAAL 380 (399)
T ss_pred HHHHHHHHHhCCC----CCceeCCCchhcchHHHHHHHHHHHHHHHHhCCCcCCCCCCCCCCCCCCcccCC-CcccCCCC
Confidence 9999999999863 378999999999999999999999999999999999999999999999988877 44455578
Q ss_pred cEEEEecccccceeeeeEe
Q 040515 229 SAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl 247 (251)
+++++|||||||+|+++||
T Consensus 381 ~~al~nsfgfGG~na~lvl 399 (399)
T cd00832 381 RTALVLARGRGGFNSALVV 399 (399)
T ss_pred CEEEEeccCCCCcceEEEC
Confidence 9999999999999999986
|
CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine. |
| >PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-51 Score=353.57 Aligned_cols=238 Identities=41% Similarity=0.662 Sum_probs=215.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|+++||..|+++|++|++|++||||+|. +++.....|..++.++.. ...|...|+|||.+++|+
T Consensus 155 Gp~~ti~~acas~~~Al~~A~~~I~~G~~d~~lvgg~d~-~~~~~~~~f~~l~~~~~~-~~~~~~~~rPfd~~~~G~v~g 232 (405)
T PRK09116 155 GRVIPTSSACTSGSQGIGYAYEAIKYGYQTVMLAGGAEE-LCPTEAAVFDTLFATSTR-NDAPELTPRPFDANRDGLVIG 232 (405)
T ss_pred CCcccccchhhhHHHHHHHHHHHHHcCCCCEEEEecchh-cChHHHHHHHHhhhhccC-CCCCCCCCCCCcCCCCCEeee
Confidence 899999999999999999999999999999999999998 677777778777766532 345677899999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.| +...+.++++++|++++++|+|||||++|||||+.+|.
T Consensus 233 EGa~~~vLe~~~~A~~rga~i~a~i~g~~~~~d~~~~~~p--~~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~ 310 (405)
T PRK09116 233 EGAGTLVLEELEHAKARGATIYAEIVGFGTNSDGAHVTQP--QAETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDI 310 (405)
T ss_pred ccEEEEEEccHHHHHhCCCceEEEEEEEEEcCCCCcCCCC--CHHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCH
Confidence 6788999999999999999999999876655 56788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC-CCCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF-NDNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (251)
.|..|++++|+. .+||++.|+++||+++|+|++++++++++|++++|||++|+++|+|++ ++++++ ...+..+
T Consensus 311 ~E~~Ai~~~fg~-----~~pv~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ippt~~~~~~~~~~~~l~~v~-~~~~~~~ 384 (405)
T PRK09116 311 AESQATAAVFGA-----RMPISSLKSYFGHTLGACGALEAWMSIEMMNEGWFAPTLNLTQVDPACGALDYIM-GEAREID 384 (405)
T ss_pred HHHHHHHHHhCC-----CCeeECcchhhcccHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCCCCcccCccC-CCCccCC
Confidence 999999999985 279999999999999999999999999999999999999999999998 678777 4455567
Q ss_pred CcEEEEecccccceeeeeEee
Q 040515 228 ISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+++|+|+|||||+|+++||+
T Consensus 385 ~~~~l~nsfGfGG~n~~lvl~ 405 (405)
T PRK09116 385 TEYVMSNNFAFGGINTSLIFK 405 (405)
T ss_pred CCEEEEeeecCCcccEEEEEC
Confidence 899999999999999999985
|
|
| >PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=353.35 Aligned_cols=242 Identities=48% Similarity=0.820 Sum_probs=222.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.++.. +..|+..|+|||..++|+
T Consensus 153 Gp~~~~~~acas~~~Al~~A~~~i~~G~~d~~lv~g~d~~l~~~~~~~f~~~~~ls~~-~~~p~~~~rpfd~~~~G~v~g 231 (406)
T PRK08439 153 GPNLSSVTACAAGTHAIIEAVKTIMLGGADKMLVVGAESAICPVGIGGFAAMKALSTR-NDDPKKASRPFDKDRDGFVMG 231 (406)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEecchhccCHHHHHHHHHhCccccC-CCCCccCcCCccCCCCcEEee
Confidence 7999999999999999999999999999999999999998999999999999988754 455778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.+.|+.+.+.|.+ .++.++|+++|+++|+ +|||||++||+||+.+|.
T Consensus 232 EGa~~lvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~p~~--~~~~~a~~~al~~ag~--~~i~~v~~hgtgt~~~D~ 307 (406)
T PRK08439 232 EGAGALVLEEYESAKKRGAKIYAEIIGFGESGDANHITSPAP--EGPLRAMKAALEMAGN--PKIDYINAHGTSTPYNDK 307 (406)
T ss_pred CceEEEEEccHHHHHHCCCeEEEEEEeEEccCCCCCCCCCCH--HHHHHHHHHHHHHcCC--CccCEEEccCCcCCCCCH
Confidence 678899999999999999999999888777655 6888999999999999 799999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..+++++|+... ..+++++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++++++ ...+..+.
T Consensus 308 ~E~~al~~~f~~~~--~~~~v~s~K~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~ 384 (406)
T PRK08439 308 NETAALKELFGSKE--KVPPVSSTKGQIGHCLGAAGAIEAVISIMAMRDGILPPTINQETPDPECDLDYIP-NVARKAEL 384 (406)
T ss_pred HHHHHHHHHhcccC--CCCeEECcccccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCCcccCC-CccccCCC
Confidence 99999999998643 2368999999999999999999999999999999999999999999999998888 44556678
Q ss_pred cEEEEecccccceeeeeEeeec
Q 040515 229 SAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.+++|||||||+|+++||++|
T Consensus 385 ~~~l~nsfgfGG~n~~lvl~~~ 406 (406)
T PRK08439 385 NVVMSNSFGFGGTNGVVIFKKV 406 (406)
T ss_pred CEEEEeeecCCCceEEEEEecC
Confidence 9999999999999999999986
|
|
| >PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-51 Score=349.96 Aligned_cols=233 Identities=42% Similarity=0.707 Sum_probs=214.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||.+|+++|++|++|++||||+|...++..+..|..++.++. ..|+|||.+++|+
T Consensus 137 Gp~~ti~~aCasg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~ls~-------~~~rPfd~~r~G~v~g 209 (381)
T PRK05952 137 GPVLAPMAACATGLWAIAQGVELIQTGQCQRVIAGAVEAPITPLTLAGFQQMGALAK-------TGAYPFDRQREGLVLG 209 (381)
T ss_pred CccccccchhHHHHHHHHHHHHHHHcCCCCEEEEccccccCCHHHHHHHHhcCCcCC-------CCCCCCCCCCCCcccc
Confidence 899999999999999999999999999999999999998889999999999988864 4599999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++++++|++|+|++.++|+.+...+.++...+.++++++|+++|++|+||||||+||+||+.+|.
T Consensus 210 EGaa~lvLe~~~~A~~rg~~i~a~I~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~ 289 (381)
T PRK05952 210 EGGAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQ 289 (381)
T ss_pred ccEEEEEEeeHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcH
Confidence 67889999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..+++++|+. .+||++.|+++||+++|+|++++++++++|++++|||++|+++|.++ +++++ .++..+.
T Consensus 290 ~E~~al~~~fg~-----~~~v~s~K~~~GH~~~AaG~~~~~~~~~~l~~~~ipp~~~~~~~~~~--~~~v~--~~~~~~~ 360 (381)
T PRK05952 290 REANLIQALFPH-----RVAVSSTKGATGHTLGASGALGVAFSLLALRHQQLPPCVGLQEPEFD--LNFVR--QAQQSPL 360 (381)
T ss_pred HHHHHHHHHcCC-----CCeeecchhhhccChHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCC--CCcCC--CcccCCC
Confidence 999999999974 38999999999999999999999999999999999999999987554 45554 2345578
Q ss_pred cEEEEecccccceeeeeEeee
Q 040515 229 SAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~ 249 (251)
+++++|+|||||+|+++||++
T Consensus 361 ~~~l~~s~gfGG~na~lvl~~ 381 (381)
T PRK05952 361 QNVLCLSFGFGGQNAAIALGK 381 (381)
T ss_pred CEEEEeeecCCCeeEEEEEeC
Confidence 999999999999999999985
|
|
| >COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=389.02 Aligned_cols=245 Identities=31% Similarity=0.517 Sum_probs=226.6
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++|+++||+.|++|+||++|+||++...++.....+++.+.++ |++.|++||..++||
T Consensus 165 GPs~~vdtaCSSsLvAvhlA~~sL~~Ge~d~alaGgv~l~~~p~~~~~~~~~g~ls------~~g~c~~fd~~adG~v~g 238 (1061)
T COG3321 165 GPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYLFSAGGMLS------PDGRCKAFDADADGYVRG 238 (1061)
T ss_pred CCCccccchhhHHHHHHHHHHHHHHcCCCCEEEecceEeccCCcceeeeecccCcC------CCCcceecccCCCCEEEe
Confidence 89999999999999999999999999999999999999999999999999999887 779999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|.++|++||++|+|+++++||.......|+..++..+++++|+++||+|++|+|||+|||||+.+|+
T Consensus 239 eG~g~vvLKrl~~A~~dgd~IyavI~gsavn~dG~~~gltaP~~~aQ~~v~~~al~~a~i~p~tv~yvEaHgTGT~lGDp 318 (1061)
T COG3321 239 EGAGVVVLKRLSDAERDGDRIYAVIRGSAVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDP 318 (1061)
T ss_pred eeEEEEEEEEhHHHHhCCCeEEEEEEeeeeccCCCcCCCCCCCHHHHHHHHHHHHHhcCCCcccCcEEEecCCCCCCcCH
Confidence 78899999999999999999999997656677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccc-----cC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLT-----AS 223 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~-----~~ 223 (251)
+|..++..+|+......++.++|+|+|+||++.|+|+++++|++++|+++.+||++|+++|+|.++++..|+. .+
T Consensus 319 iE~~aL~~v~~~~~~~~~c~iGSvKsNiGH~~~AaGiagliK~~Lal~~~~ip~~l~~~~~np~i~~~~sp~~v~~~~~~ 398 (1061)
T COG3321 319 IEANALGAVYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFDSSPFVVPTEATP 398 (1061)
T ss_pred HHHHHHHHHhccCCCCCcccccccccccccHHHHHHHHHHHHHHHhhhcCccCCcCCCCCCCcCCccccCCeEeecCCcC
Confidence 9999999999876566789999999999999999999999999999999999999999999999987644431 11
Q ss_pred CC--CCCcEEEEecccccceeeeeEeeecC
Q 040515 224 KD--MPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 224 ~~--~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+. ..+|++.|++||+||+|+|+|||+|.
T Consensus 399 W~~~~~prrAgvssfG~gGtNaHvIlEe~~ 428 (1061)
T COG3321 399 WPTGGGPRRAGVSSFGFGGTNAHVILEEAP 428 (1061)
T ss_pred CCCCCCCceeeeeccCCCCCceEEEEeecC
Confidence 21 25899999999999999999999863
|
|
| >PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=348.04 Aligned_cols=247 Identities=44% Similarity=0.654 Sum_probs=225.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||.+|+++|++|++|++||+|+|..+++..+..|..++.++.. ...|+..++|||.+++|+
T Consensus 166 G~~~~i~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~d~~~~~~~~~~~~~~~~ls~~-~~~~~~~~rpfd~~r~G~v~G 244 (425)
T PRK06501 166 GLPISLSTACASGATAIQLGVEAIRRGETDRALCIATDGSVSAEALIRFSLLSALSTQ-NDPPEKASKPFSKDRDGFVMA 244 (425)
T ss_pred CCceeecCccHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHhhccccC-CCCCCcccCCCCCCCCCeeee
Confidence 7999999999999999999999999999999999999988899888888888877643 334678899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|.|++..+|+.+.+.+.++...+.++++++|+++|++|+|||||++||+||+.+|.
T Consensus 245 EGaaalVLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~AL~~agi~p~dId~i~~Hgtgt~~~d~ 324 (425)
T PRK06501 245 EGAGALVLESLESAVARGAKILGIVAGCGEKADSFHRTRSSPDGSPAIGAIRAALADAGLTPEQIDYINAHGTSTPENDK 324 (425)
T ss_pred ccEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCccCcchHH
Confidence 66789999999999999999999988777777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..++..+|+... ..+||++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.++ ...+..+.
T Consensus 325 ~E~~al~~~~~~~~--~~~pv~s~k~~~Gh~~~AsG~~~~~~~~l~l~~~~ipp~~n~~~~~~~~~~~~~~-~~~~~~~~ 401 (425)
T PRK06501 325 MEYLGLSAVFGERL--ASIPVSSNKSMIGHTLTAAGAVEAVFSLLTIQTGRLPPTINYDNPDPAIPLDVVP-NVARDARV 401 (425)
T ss_pred HHHHHHHHHhcccC--CCcEEECCCcccCCCchhhhHHHHHHHHHHHhcCcCCCcCCCCCCCCCCCcccCC-CcccCCCC
Confidence 99999999997532 3489999999999999999999999999999999999999999999999998887 33445578
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+.+++|||||||+|+++||++++
T Consensus 402 ~~~l~ns~gfgG~n~~~vl~~~~ 424 (425)
T PRK06501 402 TAVLSNSFGFGGQNASLVLTAEP 424 (425)
T ss_pred CEEEEeCccCCCeeEEEEEecCC
Confidence 99999999999999999999874
|
|
| >TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=346.42 Aligned_cols=244 Identities=63% Similarity=0.989 Sum_probs=221.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||.+|+++|++|++|++||+|+|.++++.....+...+.++.. +..+...++||+..++|+
T Consensus 152 g~~~~v~~acaSg~~Al~~A~~~I~~G~~d~~lvgg~e~~~~~~~~~~~~~~~~ls~~-~~~~~~~~~pfd~~~~g~~~g 230 (407)
T TIGR03150 152 GPNHAVVTACATGTHAIGDAFRLIQRGDADVMIAGGAEAAITPLGIAGFAAMKALSTR-NDDPEKASRPFDKDRDGFVMG 230 (407)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCCCCEEEEecccCcCCHHHHHHHHHhCcccCC-CCCCCcCCCCCcCCCCcEEEe
Confidence 7899999999999999999999999999999999999998898888888888877642 445667899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+...+.+...++.++++++|+++|++++||||||+|++||+.+|.
T Consensus 231 EGAaalvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~ 310 (407)
T TIGR03150 231 EGAGVLVLEELEHAKARGAKIYAEIVGYGMSGDAYHITAPAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDK 310 (407)
T ss_pred ceEEEEEEeeHHHHHHCCCeEEEEEEEEEECCCCCCCCCCCCCcHHHHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCH
Confidence 66788999999999999999999988777777777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++.++|+... .++||++.|+++||+++|||++++++++++|++++|||++|+++|+|.++++++++ +.+..+.
T Consensus 311 ~E~~a~~~~~~~~~--~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~v~~-~~~~~~~ 387 (407)
T TIGR03150 311 AETKAIKRVFGDHA--YKLAVSSTKSMTGHLLGAAGAIEAIFTVLAIRDGVVPPTINLDNPDPECDLDYVPN-EARERKI 387 (407)
T ss_pred HHHHHHHHHhccCC--CCCceeCCcchhchhHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccCC-CCccCCc
Confidence 99999999998643 24899999999999999999999999999999999999999999999999988874 4445567
Q ss_pred cEEEEecccccceeeeeEee
Q 040515 229 SAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~ 248 (251)
+++++|+|||||+|+|+||+
T Consensus 388 ~~~l~~s~gfgG~n~~~vl~ 407 (407)
T TIGR03150 388 DYALSNSFGFGGHNASLVFK 407 (407)
T ss_pred CEEEEecccCCCceEEEEeC
Confidence 89999999999999999984
|
FabB sequences should fall well below the noise cutoff of this model. |
| >cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=340.87 Aligned_cols=241 Identities=39% Similarity=0.608 Sum_probs=217.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||..|+++|++|++|++||+|+|.+. +..+..|..++.++.. ...|...++||+..++|+
T Consensus 153 Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~d~~lvgg~d~~~-~~~~~~f~~~~~ls~~-~~~~~~~~~pfd~~~~G~~~g 230 (407)
T cd00828 153 GPIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPL-EEGLSGFANMGALSTA-EEEPEEMSRPFDETRDGFVEA 230 (407)
T ss_pred CCCcCcccHHHHHHHHHHHHHHHHHcCCCCEEEEccccccC-hHHHHHHHHcCCCCCC-CCCCCcccCCCcCCCCcEEee
Confidence 79999999999999999999999999999999999999977 8788888888888754 233557899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|.|++.++|+.+...+. +..++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 231 EGAaalvLe~~~~A~~rg~~i~a~i~g~~~~~d~~~~~~~~-~~~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~~D~ 309 (407)
T cd00828 231 EGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDV 309 (407)
T ss_pred cceEEEEEeeHHHHHHCCCeEEEEEEEEEeccCCCCCCCCC-ChHHHHHHHHHHHHHcCCCHHHcCEEecccccCccccH
Confidence 67889999999999999999999988766555 67889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCC-
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP- 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (251)
.|..+++++|+... .++||++.|+++||+++|+|++++++++++|+++++||++|+++|+|+++.+.++ ...+..+
T Consensus 310 ~E~~ai~~~~~~~~--~~~~v~s~K~~~Gh~~~Asg~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~ 386 (407)
T cd00828 310 AESRAIAEVAGALG--APLPVTAQKALFGHSKGAAGALQLIGALQSLEHGLIPPTANLDDVDPDVEHLSVV-GLSRDLNL 386 (407)
T ss_pred HHHHHHHHHHhccC--CCceeecccchhccchhhhhHHHHHHHHHHHhcCccCCCCCCCCCCccccccccc-CcCccCCC
Confidence 99999999998754 3489999999999999999999999999999999999999999999999777666 3334444
Q ss_pred -CcEEEEecccccceeeeeEe
Q 040515 228 -ISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 228 -~~~~lv~~~g~gG~~~~~vl 247 (251)
.+.+++|+|||||+|+++||
T Consensus 387 ~~~~al~~s~gfgG~n~~lv~ 407 (407)
T cd00828 387 KVRAALVNAFGFGGSNAALVL 407 (407)
T ss_pred CccEEEEecccCCCcceEEEC
Confidence 48999999999999999986
|
They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues. |
| >cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=333.75 Aligned_cols=243 Identities=58% Similarity=0.936 Sum_probs=221.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|+++||..|+++|++|++|.+||+|+|..+.+..+..|..++.++... ..|...++||+..++|+
T Consensus 152 g~~~~v~~acas~~~Al~~A~~~i~~G~~d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~-~~p~~~~~pf~~~~~g~~~g 230 (406)
T cd00834 152 GPNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTRN-DDPEKASRPFDKDRDGFVLG 230 (406)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHcCCCCEEEEcCcccccCHHHHHHHHhcCCcCCCC-CCCccCCCCCCCCCCCEeee
Confidence 78999999999999999999999999999999999999988899999999988887642 23667899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
+.++|+++++++|++|+|++..+++.+.+.+.+...++.++++++|+++|++++|||||++|++||+.+|.
T Consensus 231 eGA~a~vL~~~~~A~~~g~~~~a~i~g~~~~~d~~~~~~~~~~~~~~~~~i~~al~~agi~~~dId~v~~h~tgt~~~d~ 310 (406)
T cd00834 231 EGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYINAHGTSTPLNDA 310 (406)
T ss_pred ccEEEEEEecHHHHHHCCCeEEEEEEEEEecccCCCCCCCCCCcHHHHHHHHHHHHHcCCCHHHCCEEecccccCccccH
Confidence 66788899999999999999999988777777778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|.+++.++|+... .++++++.|+++||+++|||++++++++++|+++++||++|+++|+|.+++++++ .+.++.+.
T Consensus 311 ~E~~al~~~~~~~~--~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~ 387 (406)
T cd00834 311 AESKAIKRVFGEHA--KKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDGVLPPTINLEEPDPECDLDYVP-NEAREAPI 387 (406)
T ss_pred HHHHHHHHHhcccC--CCCceeCcchhhccchhhhhHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccC-CCCccccc
Confidence 99999999998642 3489999999999999999999999999999999999999999999988888776 44455567
Q ss_pred cEEEEecccccceeeeeEe
Q 040515 229 SAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl 247 (251)
|++++|+|||||+|+|+||
T Consensus 388 ~~~l~~s~g~gG~n~~~vl 406 (406)
T cd00834 388 RYALSNSFGFGGHNASLVF 406 (406)
T ss_pred cEEEEeeecCCceeeEEEC
Confidence 9999999999999999996
|
KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. |
| >PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=331.50 Aligned_cols=239 Identities=34% Similarity=0.546 Sum_probs=210.1
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccc-cCCCCCCcccccccCCCcc--
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-YNGTPQEASRPFDCGRDGF-- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~f~~~~~g~-- 77 (251)
||+++++++|+|++.||..|+++|++|++|++||+|++...++.....|..++.++.. +..+|...|+|||..++|+
T Consensus 158 G~~~tv~~acas~~~Al~~A~~~I~~G~~d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG~v~ 237 (410)
T PRK07103 158 GEGFTVGGASASGQLAVIQAARLVQSGSVDACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDGFIY 237 (410)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCCeeE
Confidence 7999999999999999999999999999999999999887888888888888877642 2446778999999999998
Q ss_pred ----------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ----------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ----------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+++|+++|++|+|++.++|+.+.. .+...++.++++++|+++|++|+|||||++||+||+.+|
T Consensus 238 gEGaaalvLe~~~~A~~~g~~i~a~I~g~~~~~d~~~~~--~p~~~~~~~a~~~Al~~Agi~~~dId~v~~hgtgt~~~D 315 (410)
T PRK07103 238 GEACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGP--DPSLEGEMRVIRAALRRAGLGPEDIDYVNPHGTGSPLGD 315 (410)
T ss_pred eeeEEEEEEccHHHHHHCCCceEEEEEEEEEecCCCCCC--CCCHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCCCCC
Confidence 67889999999999999999999988754 445667889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCC-CCCCCCCCCccccCCCC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP-DPIFNDNFMPLTASKDM 226 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~-~~~~~~~~~~~~~~~~~ 226 (251)
..|..+| |+.. ..++||++.|+.+||+++|+|++++++++++|++++|||++|+++| ++.+ ++++ ...+..
T Consensus 316 ~~E~~al---~~~~--~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~l~l~~~~ipp~~~~~~~~~~~~--~~v~-~~~~~~ 387 (410)
T PRK07103 316 ETELAAL---FASG--LAHAWINATKSLTGHGLSAAGIVELIATLLQMRAGFLHPSRNLDEPIDERF--RWVG-STAESA 387 (410)
T ss_pred HHHHHHH---hcCC--CCCCeEECCCcccccCchhhhHHHHHHHHHHHhCCeeCCCCCCCCCCCCCc--CccC-CCCcCC
Confidence 9999999 3322 1348999999999999999999999999999999999999999998 5544 4444 333445
Q ss_pred CCcEEEEecccccceeeeeEeee
Q 040515 227 PISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 227 ~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+++++|+|||||+|+++||++
T Consensus 388 ~~~~~l~~s~gfGG~n~~~vl~~ 410 (410)
T PRK07103 388 RIRYALSLSFGFGGINTALVLER 410 (410)
T ss_pred CCCEEEEecccCCCceEEEEEeC
Confidence 68999999999999999999986
|
|
| >PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=322.82 Aligned_cols=237 Identities=40% Similarity=0.701 Sum_probs=205.8
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
||+++++++|+|++.||..|+++|++|++|.+||+|+|. ..+..+..|..++.++. ..|+|||..++|+...
T Consensus 151 Gp~~~i~~acas~~~Al~~A~~~I~~G~~d~vlvgg~d~-~~~~~~~~~~~~~~l~~-------~~~~Pfd~~~~G~~~g 222 (392)
T PRK09185 151 GPAYTISTACSSSAKVFASARRLLEAGLCDAAIVGGVDS-LCRLTLNGFNSLESLSP-------QPCRPFSANRDGINIG 222 (392)
T ss_pred CCcccccChhHHHHHHHHHHHHHHHcCCCCEEEEeeccc-cChHHHHHHHhccccCC-------CccCCCcCCCCcccee
Confidence 799999999999999999999999999999999999997 45555566666666542 6799999999999443
Q ss_pred hhh-----hcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHH
Q 040515 81 HAK-----KRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIR 155 (251)
Q Consensus 81 ~A~-----~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~ 155 (251)
++. ++-....++|.|++..+|+.+...+.+...++.++++++|+++|++|+|||||++||+||+.+|..|..++.
T Consensus 223 EGaa~vVLe~~~~~~~~I~g~g~~~d~~~~~~~~~~~~~~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~ 302 (392)
T PRK09185 223 EAAAFFLLEREDDAAVALLGVGESSDAHHMSAPHPEGLGAILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVA 302 (392)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHH
Confidence 321 111122357999999999988777788888889999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 156 TVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 156 ~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
++|+.. +||++.|+++||+++|+|++++++++++|+++++||++|+++++|+++++.++ .+.+....+++++|+
T Consensus 303 ~~f~~~-----~pv~s~K~~~Gh~~~AaG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s 376 (392)
T PRK09185 303 AVFGDG-----VPCSSTKGLTGHTLGAAGAVEAAICWLALRHGLPPHGWNTGQPDPALPPLYLV-ENAQALAIRYVLSNS 376 (392)
T ss_pred HHhCCC-----CceeCCCcccccChhhcchHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccC-CCCccCCCCEEEEeC
Confidence 999753 68999999999999999999999999999999999999999999999877666 344455689999999
Q ss_pred ccccceeeeeEeeecC
Q 040515 236 FGFGGTNASLLFTKCQ 251 (251)
Q Consensus 236 ~g~gG~~~~~vl~~~~ 251 (251)
|||||+|+++||++.+
T Consensus 377 ~gfgG~n~~lvl~~~~ 392 (392)
T PRK09185 377 FAFGGNNCSLIFGRAD 392 (392)
T ss_pred ccCCceeEEEEEEeCC
Confidence 9999999999999865
|
|
| >smart00825 PKS_KS Beta-ketoacyl synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=324.02 Aligned_cols=243 Identities=33% Similarity=0.562 Sum_probs=215.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||..|+++|++|++|++||+|+|....+..+..+...+.++ +...++||+..++|+
T Consensus 161 g~~~~v~~acasg~~Al~~A~~~I~~G~~d~vlvgg~~~~~~~~~~~~~~~~~~l~------~~~~~~pf~~~~~g~~~g 234 (424)
T smart00825 161 GPSVTVDTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLS------PDGRCKTFDADADGYVRG 234 (424)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeecCCHHHHHHHhhcCCCC------CCCCCCCCCCCCCccccc
Confidence 78999999999999999999999999999999999999988888888888777765 457899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
+.++|+++++++|++|+|++..+++.+.....+....+..+++++|+++|++++|||+|++||+||+.+|.
T Consensus 235 eGAaalVLe~~e~A~~~g~~i~a~I~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~dId~i~~h~tgt~~~d~ 314 (424)
T smart00825 235 EGVGVVVLKRLSDALRDGDPILAVIRGSAVNQDGRSNGLTAPSGPAQARLIRQALARAGVDPADVDYVEAHGTGTPLGDP 314 (424)
T ss_pred ceEEEEEEccHHHHHHCCCeEEEEEEEEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHhCCCHHHccEEEeeCCCCCCCCH
Confidence 66788899999999999999999887654555677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC-CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC----CccccC
Q 040515 149 VEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF----MPLTAS 223 (251)
Q Consensus 149 ~E~~a~~~~~~~~~-~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~----~~~~~~ 223 (251)
.|..+++.+|+... .+.++||++.|+++||+.+|+|++++++++++|++++|||++|+++|++.++++. ++ ...
T Consensus 315 ~E~~al~~~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~-~~~ 393 (424)
T smart00825 315 IEAEALAAVFGQGRPRDGPLLLGSVKSNIGHLEAAAGVAGLIKVVLALRHGTIPPTLHFETPNPHIDLEESPLRVP-TEA 393 (424)
T ss_pred HHHHHHHHHHhccCCCCCceEEeccccccCCcccchhHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCceEcc-CCC
Confidence 99999999998643 2346899999999999999999999999999999999999999999999887652 22 122
Q ss_pred C----CCCCcEEEEecccccceeeeeEeeec
Q 040515 224 K----DMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 224 ~----~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+ ...++.+++|+|||||+|+++||++|
T Consensus 394 ~~~~~~~~~~~~l~~s~gfgg~n~~lvl~~~ 424 (424)
T smart00825 394 TPWPATGRPRRAGVSSFGFGGTNAHVILEEA 424 (424)
T ss_pred cCCCCCCCccEEEEeccCCCCceEEEEEecC
Confidence 1 23579999999999999999999986
|
The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. |
| >cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=313.02 Aligned_cols=240 Identities=34% Similarity=0.585 Sum_probs=211.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++++|+|++.||..|+++|++|++|++||+|+|.+..+..+..+..++.++ +...++||+..++|+
T Consensus 161 g~~~~v~~acas~~~Al~~A~~~I~~G~~d~~lvgg~~~~~~~~~~~~~~~~~~l~------~~~~~~pf~~~~~g~~~g 234 (421)
T cd00833 161 GPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRCRPFDADADGYVRG 234 (421)
T ss_pred CCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeeeeccCCHHHHHHHhhCCCCC------CCCCCCCCCCCCCCeeee
Confidence 78999999999999999999999999999999999999988888888888777766 446799999999988
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++++++|++|+|++..+++.+.....+....+.++++++|+++|++++|||||++||+||+.+|.
T Consensus 235 eGAaalvL~~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~p~~~~~~~a~~~al~~Agi~~~did~i~~hgtgt~~~D~ 314 (421)
T cd00833 235 EGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDP 314 (421)
T ss_pred ceEEEEEEeeHHHHHHCCCeEEEEEEEEEEcCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHCcEEEeeCCCCCCCCH
Confidence 66788899999999999999999987555555678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCC-CCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCC----CCccccC
Q 040515 149 VEATAIRTVFSDHAT-SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDN----FMPLTAS 223 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~-~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~----~~~~~~~ 223 (251)
.|..++..+|+.... ..++++++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.++++ .++ .+.
T Consensus 315 ~E~~al~~~f~~~~~~~~~~~v~s~k~~~Gh~~~aag~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~-~~~ 393 (421)
T cd00833 315 IEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVP-TEA 393 (421)
T ss_pred HHHHHHHHHHhccCCCCCceeeecCcCccccchhhhHHHHHHHHHHHHhcCCcCCcCCCCCCCCCCCcccCCeEee-CCC
Confidence 999999999986532 33589999999999999999999999999999999999999999999988753 222 111
Q ss_pred CCC----CCcEEEEecccccceeeeeEe
Q 040515 224 KDM----PISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 224 ~~~----~~~~~lv~~~g~gG~~~~~vl 247 (251)
++. .++.+++|+|||||+|+|+||
T Consensus 394 ~~~~~~~~~~~~~~~sfgfgg~n~~~vl 421 (421)
T cd00833 394 RPWPAPAGPRRAGVSSFGFGGTNAHVIL 421 (421)
T ss_pred ccCCCCCCCeEEEEeCcCCCCceeEEeC
Confidence 111 479999999999999999986
|
PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=314.94 Aligned_cols=240 Identities=24% Similarity=0.399 Sum_probs=212.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
||+++++++|+|++.||..|++.|+.|+||.+||+|++..+.|.....|.++++++ |++.|+.||...+||...
T Consensus 161 GPS~s~DtacsSsl~al~~a~~~~r~gqcd~AiVaG~~liLkPt~slQFlRLgmls------~dGsCkaFDeagnGY~Rs 234 (2376)
T KOG1202|consen 161 GPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS------PDGSCKAFDEAGNGYCRS 234 (2376)
T ss_pred CCchhhhhhhHHHHHHHHHHHHhhhccCCchhhhcccceEeccchhhHHHHhcCcC------CCCcccchhccCCceeec
Confidence 89999999999999999999999999999999999999999999999999999998 679999999999999322
Q ss_pred hh--------hhcCCeEEEEEeeeeecCCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHH
Q 040515 81 HA--------KKRGAKIYAEVRGYGMSGDAHH-ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEA 151 (251)
Q Consensus 81 ~A--------~~~g~~~~a~i~g~~~~~~~~~-~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~ 151 (251)
+. ++...++|+.|.....++||+. .....|.++.+.+.+++.|+++|++|+++-|||+|||||+.+|+-|+
T Consensus 235 eg~~avllqrk~~ArRvYAtilnartNTDGfKEqGvTfP~G~~Q~qLi~e~Yse~Gl~P~sv~YvEAHGtGTkVGDpQEa 314 (2376)
T KOG1202|consen 235 EGVVAVLLQRKSLARRVYATILNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPESVVYVEAHGTGTKVGDPQEA 314 (2376)
T ss_pred CceEEEEEehhHHHHHHHHHhhccccCCCchhhcCccCCCcHHHHHHHHHHHHhcCCCcccEEEEEeccCCCCCCChHHh
Confidence 21 1122367999999999999974 34445678899999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC------CCCCccccCCC
Q 040515 152 TAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN------DNFMPLTASKD 225 (251)
Q Consensus 152 ~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~------~~~~~~~~~~~ 225 (251)
.++.++|+. .+..|+.|+|+|+++||++-|||+..++|.+++|++|.|||++||..|||+++ +..+ .++.+
T Consensus 315 N~it~~fC~-~Rt~pLLIGSvKSNMGHaEPASGv~alaKillsmE~glip~NLHy~tPNp~ip~L~dGrLkVV--d~~lp 391 (2376)
T KOG1202|consen 315 NGITRFFCA-TRTTPLLIGSVKSNMGHAEPASGVCALAKILLSMEEGLIPPNLHYNTPNPEIPALVDGRLKVV--DRPLP 391 (2376)
T ss_pred hhHHHHHhh-cCCCceEeeeccccCCCCCccchHHHHHHHHHHHHhCcCCCccccCCCCCCcchhccceeEEe--cCCCC
Confidence 999999997 45568999999999999999999999999999999999999999999999985 2222 23444
Q ss_pred CCCcEEEEecccccceeeeeEeee
Q 040515 226 MPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
.+..++.+|||||||+|+|+||+.
T Consensus 392 ~~GGivGiNSFGFGGsN~HviLks 415 (2376)
T KOG1202|consen 392 WRGGIVGINSFGFGGSNAHVILKS 415 (2376)
T ss_pred ccCceeeeeccccCCCceeEEecc
Confidence 556789999999999999999975
|
|
| >PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=290.28 Aligned_cols=215 Identities=19% Similarity=0.193 Sum_probs=185.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccc-ccc---CCCc
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP-FDC---GRDG 76 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-f~~---~~~g 76 (251)
||++||+++|+|++.||.+|+++|++|++|++||||+|..+++..+..|..++.++. ..+.| ||. +++|
T Consensus 166 Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~d~~lvGG~d~~~~~~~~~~~~~~~~ls~-------~~~~p~~d~~~~~r~G 238 (398)
T PRK06519 166 GSSRTFMGEESAGVSAIEIAFARIASGQSDHALVGGAYNAERPDMLLLYELGGLLLK-------GGWAPVWSRGGEDGGG 238 (398)
T ss_pred CccccccCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHcCccCC-------CCCCchhccCccCCCC
Confidence 899999999999999999999999999999999999999888888888888888764 23444 554 5888
Q ss_pred c------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc
Q 040515 77 F------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTP 144 (251)
Q Consensus 77 ~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~ 144 (251)
+ ++++|++||++||++|+|++...+ +. ....+.++|++||++||+ ++|||||++|||||+
T Consensus 239 ~v~GEGAa~lvLE~~~~A~~Rga~i~AeI~G~~~d~~------~~-~~~~~~~am~~AL~~Agl-~~~IdyI~ahgtgT~ 310 (398)
T PRK06519 239 FILGSGGAFLVLESREHAEARGARPYARISGVESDRA------RR-APGDLEASLERLLKPAGG-LAAPTAVISGATGAH 310 (398)
T ss_pred eeeeceEEEEEEeeHHHHHhCCCceEEEEEEEeecCC------CC-ChHHHHHHHHHHHHHCCC-cccCCEEEeCCCCCC
Confidence 8 778999999999999999964332 11 335788999999999999 899999999999999
Q ss_pred CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCC
Q 040515 145 LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASK 224 (251)
Q Consensus 145 ~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 224 (251)
.+|..|..||+++|+ .||++.|+++||+++|+|+++++.++++|+++++||++|++ |+ .+.
T Consensus 311 ~~D~~E~~Ai~~~f~-------~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~g~vpp~~n~~---~~---------~~~ 371 (398)
T PRK06519 311 PATAEEKAALEAALA-------GPVRGIGTLFGHTMEAQFPLGLALAALSVSKGALFPPFDAS---GE---------KPM 371 (398)
T ss_pred CccHHHHHHHHHHcC-------CCccccchhhccchHHHHHHHHHHHHHHHhcCccCCCCCCC---cc---------cCc
Confidence 999999999999994 57999999999999999999999999999999999999972 21 223
Q ss_pred CCCCcEEEEecccccceeeeeEeee
Q 040515 225 DMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 225 ~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
....+.++++++|++|.-...+++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (398)
T PRK06519 372 SGAAREAVVTTVGHWRGEGMALVEA 396 (398)
T ss_pred cccccEEEEEeeccCCcceeEEEEe
Confidence 4557889999999998777766664
|
|
| >cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=234.36 Aligned_cols=234 Identities=37% Similarity=0.518 Sum_probs=197.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++++.+|+|++.||+.|+++|++|++|.+||+++|....+.........+.. .|+..++||+...+++
T Consensus 87 g~~~~v~~~cas~~~al~~A~~~i~~g~~~~~Lv~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g 160 (332)
T cd00825 87 GPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEELAAPMDCEFDAMGALS------TPEKASRTFDAAADGFVFG 160 (332)
T ss_pred CCccccccHhHHHHHHHHHHHHHHHcCCCCEEEEeccccccCHHHHHHHhhcccc------CCCCCCCCCCCCCCCEEEE
Confidence 6899999999999999999999999999999999999987666544332222222 2557788999888877
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
+.++|.+++.+++++|.++....++.......+....+.++++++|+++|++++|||+++.|+++++..|.
T Consensus 161 dGaaA~vL~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~ 240 (332)
T cd00825 161 DGAGALVVEELEHALARGAHIYAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDV 240 (332)
T ss_pred eeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCcCHHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCH
Confidence 55677888999999999999988876544445556788899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++...+... ++++.+.|..+||+.+|++++++++++++++++.+||++|+.++++.. ..+. .+.+..+.
T Consensus 241 ~e~~~~~~~~~~~----~~~~~~~~~~~G~~~aas~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~-~~~~~~~~ 313 (332)
T cd00825 241 KELKLLRSEFGDK----SPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAG--LNIV-TETTPREL 313 (332)
T ss_pred HHHHHHHHHhCCC----CceeECCCcccccchhHhHHHHHHHHHHHHhcCccCCCCCCCCCCccc--Cccc-CCCCCCCC
Confidence 9999998877542 478999999999999999999999999999999999999999998833 2222 33444567
Q ss_pred cEEEEecccccceeeeeEe
Q 040515 229 SAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl 247 (251)
+.++++++|+||+++++||
T Consensus 314 ~~~l~~~~G~Gg~~~~~vl 332 (332)
T cd00825 314 RTALLNGFGLGGTNATLVL 332 (332)
T ss_pred CEEEEeeecCCCeeEEEeC
Confidence 8999999999999999986
|
Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units). |
| >PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=222.73 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=169.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||..|+++|++|++|.+||+|+|.++.+..+..|...+.+... ......-|.+.+..+
T Consensus 124 ~~~~~i~~~casg~~Al~~A~~~i~~G~~~~~lvgg~d~~~~~~~~~~~~~~~~l~~~----~~~~G~v~GEGA~a~vLe 199 (348)
T PRK06147 124 PGSAVIARGRVSGAVALAQARRLIAAGGCPRVLVAGVDSLLTGPTLAHYEARDRLLTS----QNSNGFIPGEAAAAVLLG 199 (348)
T ss_pred CCcccccccchHHHHHHHHHHHHHHcCCCCEEEEEeeccccCHHHHHHHHHhhccCCC----CCCCceeeeceEEEEEEc
Confidence 4679999999999999999999999999999999999998887766666665554321 001111122222222
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCC-CCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQ-PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRT 156 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~ 156 (251)
++++|+++++++|+ .|++...++.+... ..+++.++.++++++|+++|++|+|||||++|++||..+|..|..++.+
T Consensus 200 ~~~~A~~rga~i~a--~g~~~~~~~~~~~~~~p~~g~gl~~ai~~AL~~agl~~~dId~v~ah~~gt~~~d~~e~~A~~~ 277 (348)
T PRK06147 200 RPAGGEAPGLPLLG--LGLGREPAPVGESEDLPLRGDGLTQAIRAALAEAGCGLEDMDYRIADLNGEQYRFKEAALAEMR 277 (348)
T ss_pred cHhhhhcCCCceEE--EEEeecCCCcccCCCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEcCCCCCccchHHHHHHHHH
Confidence 66788899999998 56666666543321 2236789999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecc
Q 040515 157 VFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSF 236 (251)
Q Consensus 157 ~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~ 236 (251)
+|+.... ..|+.+.|+.+||+.+|+|+++++.++++|+++++|+. .+|+.+.
T Consensus 278 ~f~~~~~--~~~~~~~k~~~Gh~~aAaG~~~~~~a~~~~~~g~~~g~--------------------------~~L~~s~ 329 (348)
T PRK06147 278 LFRVRKE--FFDLWHPAECIGEIGAAIGPALLGVALAASRKGYGPGP--------------------------NVLCHLS 329 (348)
T ss_pred HhhhccC--CCceecchHhhcchHHHHHHHHHHHHHHHHHcCcCCCC--------------------------cEEEEec
Confidence 9986432 36899999999999999999999999999999987522 4566666
Q ss_pred cccceeeeeEeee
Q 040515 237 GFGGTNASLLFTK 249 (251)
Q Consensus 237 g~gG~~~~~vl~~ 249 (251)
.-.|.-+++||++
T Consensus 330 ~d~g~r~a~~l~~ 342 (348)
T PRK06147 330 DDDGARAALVLEY 342 (348)
T ss_pred CCCCceEEEEEec
Confidence 6677777777764
|
|
| >PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-30 Score=186.35 Aligned_cols=118 Identities=38% Similarity=0.641 Sum_probs=99.6
Q ss_pred EEEEeeeeecCCC-CCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCcee
Q 040515 90 YAEVRGYGMSGDA-HHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168 (251)
Q Consensus 90 ~a~i~g~~~~~~~-~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~ 168 (251)
|++|+|+++++|+ .+.....++..++.++++++|+++|++|+||||||+||+||+.+|..|..++.++|+....+.+++
T Consensus 1 ya~i~g~~~~~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~~~~~~~ 80 (119)
T PF02801_consen 1 YAVIRGYGVNSDGARSSSLTAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSARQQPVP 80 (119)
T ss_dssp SEEEEEEEEEE-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGGGTSTSE
T ss_pred CEEEEEEEEECCCCCCCCCcCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccccccccc
Confidence 6899999999999 677778888999999999999999999999999999999999999999999999999765455799
Q ss_pred eecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCC
Q 040515 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLA 207 (251)
Q Consensus 169 v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~ 207 (251)
|+++|+++||+++|+|++++++++++|++++|||++|++
T Consensus 81 v~s~K~~~Gh~~~asG~~~l~~~~l~l~~~~ipp~~n~~ 119 (119)
T PF02801_consen 81 VGSVKSNIGHTEAASGLLSLAKALLALEHGTIPPTINFE 119 (119)
T ss_dssp EE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT-S
T ss_pred eeccccccccccccchHHHHHHHHHHHhcCCCCCCcCCC
Confidence 999999999999999999999999999999999999975
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A .... |
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=178.17 Aligned_cols=193 Identities=36% Similarity=0.486 Sum_probs=159.6
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
+|+++++.+|+|++.||..|+++|++|++|.+||+++|. ..|.+.+...
T Consensus 59 ~~~~~i~~~C~s~~~al~~A~~~i~~g~~~~~lv~~~e~----------------------------~~~gdGAaa~vL~ 110 (254)
T cd00327 59 GPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE----------------------------FVFGDGAAAAVVE 110 (254)
T ss_pred CCcceeccHhHHHHHHHHHHHHHHHCCCCCEEEEEecce----------------------------eeecceEEEEEEC
Confidence 588999999999999999999999999999999999997 0122322222
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.+.+++.+++.+|.++....++.... +......+.++++++|+++|++++|||+|++|.+++...|..|..+....
T Consensus 111 ~~~~a~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~~~~~~~~~~~ 189 (254)
T cd00327 111 SEEHALRRGAHPQAEIVSTAATFDGASMV-PAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDP 189 (254)
T ss_pred cHHHHHHCCCceEEEEEEEEEcCCCCCCC-CCCChHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCccccHHHHHHHHHH
Confidence 44566777888999999988877654322 23456788999999999999999999999999999999999988876554
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
+... ++++...+..+||+.+|+++..+.+++.+++.+.+||. ..+.+.++++++|
T Consensus 190 ~~~~----~~~~~~~~~~~G~~~~as~~~~l~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~g 244 (254)
T cd00327 190 DGVR----SPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT---------------------PREPRTVLLLGFG 244 (254)
T ss_pred hCCC----CCceeccccccccchHHHHHHHHHHHHHHHhCCCcCCC---------------------CCCcCEEEEeeEc
Confidence 4322 26889999999999999999999999999999998871 1335789999999
Q ss_pred ccceeeeeEe
Q 040515 238 FGGTNASLLF 247 (251)
Q Consensus 238 ~gG~~~~~vl 247 (251)
+||++.++||
T Consensus 245 ~Gg~~~~~~l 254 (254)
T cd00327 245 LGGTNAAVVL 254 (254)
T ss_pred CCCcceEEEC
Confidence 9999999986
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK13359 beta-ketoadipyl CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=180.11 Aligned_cols=128 Identities=24% Similarity=0.300 Sum_probs=102.2
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|.|++... ..+.+...+...+++++|+++|++|+|||+||.| |+++...+
T Consensus 266 s~e~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~A~~~al~~AGl~~~DID~iei~----------dafa~~~l 330 (400)
T PRK13359 266 SEAAARRHGLKPRARVLGIATAG-----VEPRVMGIGPAPATQKLLARLGMTLDQFDVIELN----------EAFASQGL 330 (400)
T ss_pred cHHHHHHCCCCccEEEEEEEEec-----CCCCccchhHHHHHHHHHHHhCCCHHHcCcCccC----------cHhHHHHH
Confidence 66788889999999999998864 2234455677899999999999999999999998 44443332
Q ss_pred -----hhccCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcE
Q 040515 158 -----FSDHATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA 230 (251)
Q Consensus 158 -----~~~~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (251)
|+-. .+..|++..++. +|||.+|+|+.+++++++||+. ...++
T Consensus 331 ~~~e~lg~~--~~~~pvN~~GG~la~GHp~gasG~~~v~e~~~qL~~----------------------------~~~~~ 380 (400)
T PRK13359 331 AVLRELGLA--DDDARVNPNGGAIALGHPLGASGARLVTTALYQLER----------------------------TGGRF 380 (400)
T ss_pred HHHHHcCCC--CCCCCEECCCchhhcCCchhHHHHHHHHHHHHHHhh----------------------------cCCCe
Confidence 3211 123799999995 8999999999999999999985 23567
Q ss_pred EEEecccccceeeeeEeeec
Q 040515 231 ALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 231 ~lv~~~g~gG~~~~~vl~~~ 250 (251)
++++.+..||...++|||+.
T Consensus 381 g~~~~c~~gG~g~a~~ie~~ 400 (400)
T PRK13359 381 ALCTMCIGVGQGIAIAIERV 400 (400)
T ss_pred EEEEEcccCCceeEEEEEeC
Confidence 99999999999999999973
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-23 Score=179.01 Aligned_cols=130 Identities=21% Similarity=0.304 Sum_probs=105.9
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++...+. +...+.....+++++|+++||+|+|||++|+| |.+++..+
T Consensus 260 see~A~~~g~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~Al~~AGl~p~DID~~ei~----------dafa~~~l 324 (392)
T PRK06633 260 SEEALKKHNLTPLARIVSYASAGVD-----PSIMGTAPVPASQKALSKAGWSVNDLEVIEVN----------EAFAAQSI 324 (392)
T ss_pred cHHHHHHCCCCeeEEEEEEEEecCC-----cchhchHHHHHHHHHHHHcCCCHHHcCeeehh----------hHHHHHHH
Confidence 6677888899999999999987642 22223566889999999999999999999999 88888888
Q ss_pred hhccCC---CCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FSDHAT---SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~~~~~---~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
+..... ..+++++..|..+|||+||+|+.+++++++||++. +.++++++
T Consensus 325 ~~~~~l~~~~~~vN~sGg~~a~GHplgAtG~~~~~~~~~qL~~~----------------------------~~~~g~~~ 376 (392)
T PRK06633 325 YVNREMKWDMEKVNINGGAIAIGHPIGASGGRVLITLIHGLRRA----------------------------KAKKGLVT 376 (392)
T ss_pred HHHhhhCCCccccCCCCchHhhCCcHHHHHHHHHHHHHHHHHhc----------------------------CCCeEEEE
Confidence 754211 23466777777899999999999999999999851 24679999
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
.+..||...++|||+.
T Consensus 377 ~c~~gG~g~a~~~e~~ 392 (392)
T PRK06633 377 LCIGGGMGMAMCVEAV 392 (392)
T ss_pred EecccChhheEEEEeC
Confidence 9999999999999874
|
|
| >TIGR02430 pcaF beta-ketoadipyl CoA thiolase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=178.71 Aligned_cols=133 Identities=23% Similarity=0.267 Sum_probs=100.8
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++..... +.....+...+++++|+++|++|+|||++|+|+..+. +..+..+.
T Consensus 266 s~e~A~~~g~~~~~~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~DID~~ei~D~f~~-----~~l~~~e~ 335 (400)
T TIGR02430 266 SEEAVQRHGLTPRARILAAATAGVE-----PRIMGIGPVPATQKLLARAGLSIDQFDVIELNEAFAA-----QALAVLRE 335 (400)
T ss_pred cHHHHHHCCCCccEEEEEEEEecCC-----CccccchHHHHHHHHHHHhCCCHHHCCCcccCcHHHH-----HHHHHHHH
Confidence 6677888888889999999876532 2233446788999999999999999999998832211 12222233
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
|+-.. ...|++..++ .+|||.+|+|+.+++++++||+. .+.++++++.
T Consensus 336 lG~~~--~~~pvN~~GG~la~GHp~gasG~~~~~e~~~qLr~----------------------------~~~~~g~~~~ 385 (400)
T TIGR02430 336 LGLAD--DDARVNPNGGAIALGHPLGASGARLVLTALRQLER----------------------------SGGRYALCTM 385 (400)
T ss_pred cCCCC--CCCeECCCCchHhccChHHHHHHHHHHHHHHHHHh----------------------------cCCCEEEEEE
Confidence 43211 1268999999 48999999999999999999985 1246789988
Q ss_pred ccccceeeeeEeeec
Q 040515 236 FGFGGTNASLLFTKC 250 (251)
Q Consensus 236 ~g~gG~~~~~vl~~~ 250 (251)
+..||...++|||++
T Consensus 386 c~~gG~g~a~~~e~~ 400 (400)
T TIGR02430 386 CIGVGQGIALAIERV 400 (400)
T ss_pred ccccChhhEEEEEeC
Confidence 899999999999874
|
Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid. |
| >PRK07516 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=175.74 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=149.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHH--------H-----------H-hhhhhcc----c
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA--------G-----------F-CKSRALT----T 57 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~--------~-----------~-~~~~~l~----~ 57 (251)
|+++|+++|+|++.||..|+++|++|++|.+||+|+|+++...... . + ..++... +
T Consensus 77 p~~~v~~~CaSg~~Al~~A~~~I~sG~~d~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a~~y~~ 156 (389)
T PRK07516 77 PATRVENACATGSAAVYAALDAIEAGRARIVLVVGAEKMTATPTAEVGDILLGASYLKEEGDTPGGFAGVFGRIAQAYFQ 156 (389)
T ss_pred ceeeeccccHHHHHHHHHHHHHHHCCCCCEEEEEEehhhccCcchhhHHHhhhccccccccccCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999865321100 0 0 0000000 0
Q ss_pred ccC------------------CCCCC-ccccccc------------------------CCCcc------chhhhhhcCCe
Q 040515 58 KYN------------------GTPQE-ASRPFDC------------------------GRDGF------ELEHAKKRGAK 88 (251)
Q Consensus 58 ~~~------------------~~~~~-~~~~f~~------------------------~~~g~------~~~~A~~~g~~ 88 (251)
+++ ..|.. .-+|++. -.+|- +++.|++.+.
T Consensus 157 ~yg~~~e~~a~vav~~~~~A~~nP~A~~~~~~t~~~~~~~~~~~~~i~~pl~~~d~~~~~DGAaa~il~s~~~a~~~~~- 235 (389)
T PRK07516 157 RYGDQSDALAMIAAKNHANGVANPYAQMRKDLGFEFCRTVSEKNPLVAGPLRRTDCSLVSDGAAALVLADAETARALQR- 235 (389)
T ss_pred HHCCCHHHHHHHHHHHHHhhhcCChhhcCCcccHHhhhhhhhcCCcccCCCchhhcCCcCcceEEEEEecHHHHHhcCC-
Confidence 000 00100 0001100 01111 5566766643
Q ss_pred EEEEEeeeeecCCCCCCCCCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHh-h-------
Q 040515 89 IYAEVRGYGMSGDAHHITQPHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF-S------- 159 (251)
Q Consensus 89 ~~a~i~g~~~~~~~~~~~~~~~-~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~-~------- 159 (251)
.++|+|++...+.......++ .......+++++|+++||+|+|||++|+|++++.. |...++.+- .
T Consensus 236 -~v~i~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~agl~~~did~~e~~d~f~~~----~~~~~e~lg~~~~G~~~~ 310 (389)
T PRK07516 236 -AVRFRARAHVNDFLPLSRRDPLAFEGPRRAWQRALAQAGVTLDDLSFVETHDCFTIA----ELIEYEAMGLAPPGQGAR 310 (389)
T ss_pred -CEEEEEEEeccCcccccCCCccccHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCHH----HHHHHHHcCCCCCCchHH
Confidence 578999998877554322222 34677789999999999999999999999999887 555555541 1
Q ss_pred -----ccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEE
Q 040515 160 -----DHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAAL 232 (251)
Q Consensus 160 -----~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (251)
....++.+||+...+ .+|||.+|+|+.+++++++||++.. ...|..+.++++
T Consensus 311 ~~~~g~~~~~g~~pvN~sGG~la~Ghp~gasG~~~~~e~~~QL~g~a---------------------g~rQv~~a~~~l 369 (389)
T PRK07516 311 AIREGWTAKDGKLPVNPSGGLKAKGHPIGATGVSMHVLAAMQLTGEA---------------------GGMQIPGAKLAG 369 (389)
T ss_pred HHHCCCccCCCCeeecCCCCcccCCCCccHHHHHHHHHHHHHhcCCc---------------------cCCcCCchheee
Confidence 112345689988777 4699999999999999999999854 234455678999
Q ss_pred Eeccc-ccceeeeeEeeecC
Q 040515 233 SNSFG-FGGTNASLLFTKCQ 251 (251)
Q Consensus 233 v~~~g-~gG~~~~~vl~~~~ 251 (251)
+++.| .+.++..+||++.+
T Consensus 370 ~~~~gg~~~~~~~~vl~~~~ 389 (389)
T PRK07516 370 VFNMGGAAVANYVSILERVK 389 (389)
T ss_pred eeccCcccceEEEEEEEecC
Confidence 99887 44456667777653
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=174.70 Aligned_cols=223 Identities=17% Similarity=0.190 Sum_probs=148.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHH-----------Hh--hhh--------hcc----
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG-----------FC--KSR--------ALT---- 56 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~-----------~~--~~~--------~l~---- 56 (251)
|.++|+++|+|++.||..|+++|++|++|.+||+|+|.+........ +. ..+ .+.
T Consensus 74 ~~~~v~~~casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~a~~~m 153 (385)
T PRK12578 74 VPLRVEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQWEYHFYGTTFPTYYALYATRHM 153 (385)
T ss_pred CeeEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcccchhhhcccccccccccccCCCChHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998654211000 00 000 000
Q ss_pred cccCC------------------CCCC------------------------cccccccCCCcc---chhhhhhcCCeEEE
Q 040515 57 TKYNG------------------TPQE------------------------ASRPFDCGRDGF---ELEHAKKRGAKIYA 91 (251)
Q Consensus 57 ~~~~~------------------~~~~------------------------~~~~f~~~~~g~---~~~~A~~~g~~~~a 91 (251)
..++. .|.. .|-|+.+.+..+ +++.|++.+.++.+
T Consensus 154 ~~~g~t~e~~a~va~~~~~~A~~np~a~~~~~i~~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~A~~l~~~~~~ 233 (385)
T PRK12578 154 AVYGTTEEQMALVSVKAHKYGAMNPKAHFQKPVTVEEVLKSRAISWPIKLLDSCPISDGSATAIFASEEKVKELKIDSPV 233 (385)
T ss_pred HHhCcCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCccCCCccHhhcCCcCCCeEEEEEecHHHHHhcCCCCCe
Confidence 00000 0000 000000000001 55667777755678
Q ss_pred EEeeeeecCCCCCCC-CCCCCh-HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHh-hcc-------
Q 040515 92 EVRGYGMSGDAHHIT-QPHIDG-KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF-SDH------- 161 (251)
Q Consensus 92 ~i~g~~~~~~~~~~~-~~~~~~-~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~-~~~------- 161 (251)
+|+|++..++..... .++... .....+++++|++||++|+|||++|+|++++.. |..+++.+- ..+
T Consensus 234 ~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~DiD~~ei~d~ft~~----~l~~le~lGl~~~G~~~~~~ 309 (385)
T PRK12578 234 WITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDIEVATVHDAFTIA----EIMGYEDLGFTEKGKGGKFI 309 (385)
T ss_pred EEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH----HHHHHHHcCCCCCCchHHHH
Confidence 999999887654432 222222 356789999999999999999999999999865 888777662 211
Q ss_pred -----CCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCC-CCcEEEE
Q 040515 162 -----ATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM-PISAALS 233 (251)
Q Consensus 162 -----~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lv 233 (251)
..++++||+...+. +|||.+|+|+.+++++++||+... ...|.. ..+.+++
T Consensus 310 ~~G~~~~~G~~pvN~~GG~la~GhP~gatG~~~v~e~~~qLrg~a---------------------g~~qv~~~~~~~l~ 368 (385)
T PRK12578 310 EEGQSEKGGKVGVNLFGGLKAKGHPLGATGLSMIYEITKQLRDEA---------------------GKLQQPLKKYIGLV 368 (385)
T ss_pred HCCCccCCCCeeeCCCCCcccCCCCccHHHHHHHHHHHHHHhCCc---------------------ccCcCCcchheEEE
Confidence 33466899999984 599999999999999999999743 122223 2468999
Q ss_pred eccc-ccceeeeeEeee
Q 040515 234 NSFG-FGGTNASLLFTK 249 (251)
Q Consensus 234 ~~~g-~gG~~~~~vl~~ 249 (251)
++.| .+.++.++||+|
T Consensus 369 ~~~Gg~~~~~~~~v~~~ 385 (385)
T PRK12578 369 HNVGGTGHFAYVMILRR 385 (385)
T ss_pred eccCcchhhEEEEEEeC
Confidence 8887 454566666654
|
|
| >PRK09050 beta-ketoadipyl CoA thiolase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=173.50 Aligned_cols=128 Identities=26% Similarity=0.290 Sum_probs=100.0
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|+|++..... +.....+...+++++|+++||+++|||++|.| |.+++..+
T Consensus 267 s~~~A~~lg~~p~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~DId~~ei~----------D~f~~~~l 331 (401)
T PRK09050 267 SEAAAKKHGLTPRARILGMATAGVE-----PRIMGIGPAPATRKLLARLGLTIDQFDVIELN----------EAFAAQGL 331 (401)
T ss_pred cHHHHHHCCCCccEEEEEEEEeccC-----CccccchHHHHHHHHHHHcCCCHHHCCccccC----------cHhHHHHH
Confidence 6677888888889999999887532 22233456789999999999999999999999 44333222
Q ss_pred -----hhccCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcE
Q 040515 158 -----FSDHATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA 230 (251)
Q Consensus 158 -----~~~~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (251)
|+-. ....|++..++. +|||.+|+|+.+++++++||+. ...++
T Consensus 332 ~~~e~lg~~--~~~~pvN~~GG~la~Ghp~gasG~~~~~e~~~qLr~----------------------------~~~~~ 381 (401)
T PRK09050 332 AVLRQLGLA--DDDARVNPNGGAIALGHPLGMSGARLVLTALHQLER----------------------------TGGRY 381 (401)
T ss_pred HHHHHcCCC--CCCCCEeCCCchHhcCCchhHHHHHHHHHHHHHHHh----------------------------cCCCe
Confidence 2211 113799999995 8999999999999999999986 22567
Q ss_pred EEEecccccceeeeeEeeec
Q 040515 231 ALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 231 ~lv~~~g~gG~~~~~vl~~~ 250 (251)
++++.+..||...++|||++
T Consensus 382 g~~~~c~~gG~g~a~~~e~~ 401 (401)
T PRK09050 382 ALCTMCIGVGQGIALAIERV 401 (401)
T ss_pred EEEEEcccccceeEEEEEeC
Confidence 99999999999999999974
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=172.55 Aligned_cols=132 Identities=21% Similarity=0.311 Sum_probs=109.1
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|.|++.... .+.+...+...+++++|+++|++|+|||++|+|++ +..|..++.+.
T Consensus 261 s~~~A~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~dId~~e~~d~-----f~~~~~~~~e~ 330 (393)
T PRK05656 261 SAAKAKALGLPVLAKIAAYANAGV-----DPAIMGIGPVSATRRCLDKAGWSLAELDLIEANEA-----FAAQSLAVGKE 330 (393)
T ss_pred cHHHHHHCCCCeeEEEEEEEEecC-----CCcccchhHHHHHHHHHHHcCCCHHHCCEEEecCc-----cHHHHHHHHHH
Confidence 667888999999999999987652 34444557788999999999999999999999965 44577777777
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-.. .+++++..|..+|||++|+|+.++++++++|+. .+.|+++++.+.
T Consensus 331 lg~~~--~~vn~~Gg~~a~GHp~gAsG~~~~~~l~~~l~~----------------------------~~~~~gl~~~c~ 380 (393)
T PRK05656 331 LGWDA--AKVNVNGGAIALGHPIGASGCRVLVTLLHEMIR----------------------------RDAKKGLATLCI 380 (393)
T ss_pred hCCCC--ccCCcCCCHHHhCccHHHHHHHHHHHHHHHHHH----------------------------cCCCEEEEEEcc
Confidence 76422 357788888899999999999999999998864 235789999999
Q ss_pred ccceeeeeEeee
Q 040515 238 FGGTNASLLFTK 249 (251)
Q Consensus 238 ~gG~~~~~vl~~ 249 (251)
.||...++|||+
T Consensus 381 ~gG~g~a~~~e~ 392 (393)
T PRK05656 381 GGGQGVALAIER 392 (393)
T ss_pred cCcceEEEEEec
Confidence 999999999986
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=171.61 Aligned_cols=226 Identities=21% Similarity=0.317 Sum_probs=150.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh--HHH---------Hh---------hhhhcc----
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS--MAG---------FC---------KSRALT---- 56 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~--~~~---------~~---------~~~~l~---- 56 (251)
+|+++|+++|+|++.||..|+++|++|++|++||+|.|++..... ... +. ..+.+.
T Consensus 76 ~~~~~v~~aCasg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~~~ 155 (389)
T PRK06064 76 IPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEWEEFFGATFPGLYALIARRYM 155 (389)
T ss_pred CCeeEEeCCcHHHHHHHHHHHHHHHCCCCCEEEEEEEEecccCcchhhhhhhhcccccccccccCCchHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999987442110 000 00 000000
Q ss_pred cccCCC------------------CC------------------------CcccccccCCCcc---chhhhhhcCCeEEE
Q 040515 57 TKYNGT------------------PQ------------------------EASRPFDCGRDGF---ELEHAKKRGAKIYA 91 (251)
Q Consensus 57 ~~~~~~------------------~~------------------------~~~~~f~~~~~g~---~~~~A~~~g~~~~a 91 (251)
..++.+ |. ..+-++.+++..+ +.+.|++++.++ +
T Consensus 156 ~~yG~s~e~~a~~a~~~~~~A~~np~a~~~~~~t~~~~~~s~~i~~Pl~~~d~~~~~dGAaa~vL~s~~~A~~~~~~~-v 234 (389)
T PRK06064 156 HKYGTTEEDLALVAVKNHYNGSKNPYAQFQKEITVEQVLNSPPVADPLKLLDCSPITDGAAAVILASEEKAKEYTDTP-V 234 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHHhhCcHhhhCCCCCHHHHhcCCcccCCCchhhcCCCCCcceEEEEecHHHHHHhcCCC-e
Confidence 000000 00 0011111122222 667788776555 5
Q ss_pred EEeeeeecCCCCCCCC-CC-CChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH-hh---------
Q 040515 92 EVRGYGMSGDAHHITQ-PH-IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FS--------- 159 (251)
Q Consensus 92 ~i~g~~~~~~~~~~~~-~~-~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~--------- 159 (251)
+|+|++...+..+... ++ ........+++++|+++||+++|||++|+|++++.. +..+++.+ |.
T Consensus 235 ~I~g~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~aGi~~~did~~e~~d~ft~~----~~~~~e~lgl~~~G~~~~~~ 310 (389)
T PRK06064 235 WIKASGQASDTIALHDRKDFTTLDAAVVAAEKAYKMAGIEPKDIDVAEVHDCFTIA----EILAYEDLGFAKKGEGGKLA 310 (389)
T ss_pred EEEEEEEecCcccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCCCcHH----HHHHHHHcCCCCCCchHHHH
Confidence 9999998877654322 11 134567789999999999999999999999999974 54444444 21
Q ss_pred ---ccCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 160 ---DHATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 160 ---~~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
....++.+||+..++. +|||.+++|+.+++++++||+++.- . ..+|..+.+.++++
T Consensus 311 ~~g~~~~~g~~pvN~~GG~l~~Ghp~~a~G~~~~~e~~~qL~g~a~------------------~-g~rqv~~a~~~l~~ 371 (389)
T PRK06064 311 REGQTYIGGDIPVNPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAE------------------K-GRQQVIGAGYGLTH 371 (389)
T ss_pred HCCCccCCCCeeecCCCCcccCCCCcchhHHHHHHHHHHHHhCCCC------------------C-CCccCCCccEEEEe
Confidence 1112346899999996 6999999999999999999997420 0 12344567899999
Q ss_pred cccc-cceeeeeEeeec
Q 040515 235 SFGF-GGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~-gG~~~~~vl~~~ 250 (251)
++|. +..++.+||++.
T Consensus 372 ~~g~~~~~~~~~vl~~~ 388 (389)
T PRK06064 372 NVGGTGHTAVVHILSRK 388 (389)
T ss_pred cCCCccceEEEEEEEec
Confidence 8874 456677777764
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=170.25 Aligned_cols=131 Identities=23% Similarity=0.326 Sum_probs=101.2
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|.|++.... .+.....+...+++++|++|||+|+|||+||+|+..+. +..+..+.
T Consensus 267 se~~a~~~g~~~~a~i~g~~~~~~-----~~~~~~~~~~~A~~~al~~Agi~~~did~~ei~D~f~~-----~~l~~~e~ 336 (399)
T PRK09052 267 SEKALKQFNLTPLARFVSFAVAGV-----PPEIMGIGPIEAIPAALKQAGLKQDDLDWIELNEAFAA-----QSLAVIRD 336 (399)
T ss_pred cHHHHHHCCCCeeEEEEEEEEecc-----CCCccchhHHHHHHHHHHHcCCCHHHcCEEEeCcHHHH-----HHHHHHHH
Confidence 667888889899999999998763 23334457789999999999999999999999922211 11122222
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
|+- .+.|++..++ .+|||.||+|+.+++.+++||+++ +.++++++.
T Consensus 337 lg~----~~~~vN~~GG~la~GHp~gasG~~~~~~~~~~L~~~----------------------------~~~~g~~~~ 384 (399)
T PRK09052 337 LGL----DPSKVNPLGGAIALGHPLGATGAIRTATVVHGLRRT----------------------------NLKYGMVTM 384 (399)
T ss_pred hCC----CCcccCCCCchhhcCchHHHHHHHHHHHHHHHHHhc----------------------------CCCeEEEEE
Confidence 332 1257888888 789999999999999999999861 246899999
Q ss_pred ccccceeeeeEeeec
Q 040515 236 FGFGGTNASLLFTKC 250 (251)
Q Consensus 236 ~g~gG~~~~~vl~~~ 250 (251)
++.||...++|||+.
T Consensus 385 c~~gg~g~a~~~e~~ 399 (399)
T PRK09052 385 CVGTGMGAAGIFERL 399 (399)
T ss_pred cccCCceeEEEEEeC
Confidence 999999999999873
|
|
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=166.78 Aligned_cols=131 Identities=25% Similarity=0.390 Sum_probs=102.2
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++..... +.........+++++|++||++|+|||+||+|+.. .++..+..+.
T Consensus 262 s~~~a~~~g~~~~~~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~agi~~~did~~ei~d~f-----~~~~~~~~e~ 331 (394)
T PRK09051 262 EADAAEARGLKPLARLVGYAHAGVD-----PEYMGIGPVPATQKALERAGLTVADLDVIEANEAF-----AAQACAVTRE 331 (394)
T ss_pred cHHHHHHCCCCccEEEEEEEEeccC-----CCcccccHHHHHHHHHHHcCCCHHHcCEEEecCcc-----HHHHHHHHHH
Confidence 6677888898999999999987642 22334466889999999999999999999999543 3344444455
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
|+-. +.||+..++ .+|||+||+|+.++++++++|++ .+.++++++.
T Consensus 332 lg~~----~~~vN~~GG~~a~Ghp~gAsG~~~~~~~~~~L~~----------------------------~~~~~g~~~~ 379 (394)
T PRK09051 332 LGLD----PAKVNPNGSGISLGHPVGATGAIITVKALYELQR----------------------------IGGRYALVTM 379 (394)
T ss_pred hCCC----ccccCCCccHHHhcchHHHHHHHHHHHHHHHHHh----------------------------cCCCEEEEEE
Confidence 5422 136666666 58999999999999999999985 1246899999
Q ss_pred ccccceeeeeEeeec
Q 040515 236 FGFGGTNASLLFTKC 250 (251)
Q Consensus 236 ~g~gG~~~~~vl~~~ 250 (251)
+..||...++|||+.
T Consensus 380 c~~gG~g~a~~~e~~ 394 (394)
T PRK09051 380 CIGGGQGIAAIFERL 394 (394)
T ss_pred ccccChhhEEEEEeC
Confidence 999999999999974
|
|
| >TIGR02445 fadA fatty oxidation complex, beta subunit FadA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=168.78 Aligned_cols=133 Identities=21% Similarity=0.280 Sum_probs=98.1
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++...... .........+++++|+++||+|+|||++|+|...+.. |...++.+
T Consensus 250 s~e~A~~~g~~~~a~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~AGi~p~DId~~Ei~daFa~~----~l~~~e~l 320 (385)
T TIGR02445 250 SEQRANELGLKPRARIRSMAVAGCDP-----SIMGYGPVPATQKALKRAGLSISDIDVFELNEAFAAQ----ALPCLKDL 320 (385)
T ss_pred cHHHHHHCCCCeeEEEEEEEEcCCCC-----cccchhHHHHHHHHHHHcCCCHHHcCEEEEccccHHH----HHHHHHHc
Confidence 66778888889999999999875321 1122356789999999999999999999999555443 44444433
Q ss_pred -hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 -FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 -~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
|... +..|++...+ .+|||.||||+..++.+++.|++ .+.++++++
T Consensus 321 g~~~~---g~~~vN~~GG~la~GhP~GATG~r~v~~l~~~l~~----------------------------~~~~~Gl~~ 369 (385)
T TIGR02445 321 GLLDK---MDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEQ----------------------------KDATFGLAT 369 (385)
T ss_pred CCCCC---CCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh----------------------------cCCCeEEEE
Confidence 1111 1257777777 46999999999999888855532 234689999
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
+++.+|...++|||++
T Consensus 370 ~~~g~g~g~a~~~e~~ 385 (385)
T TIGR02445 370 MCIGLGQGIATVFERV 385 (385)
T ss_pred EecccChhheEEEEeC
Confidence 9999999999999974
|
This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli. |
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=170.01 Aligned_cols=130 Identities=24% Similarity=0.284 Sum_probs=100.2
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|.|++...+. +.....+...+++++|+++||+|+|||++|+| |++++..+
T Consensus 266 s~~~a~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~a~~~agl~~~did~~ei~----------d~Fa~~~l 330 (401)
T PRK08131 266 SRAAGEKYGLKPMARILSSAAAGVE-----PRIMGIGPVEAIKKALARAGLTLDDMDIIEIN----------EAFASQVL 330 (401)
T ss_pred eHHHHHHcCCCceEEEEEEEEeccC-----CccccchHHHHHHHHHHHcCCCHHHCCeehhc----------cHHHHHHH
Confidence 6677888888889999999887642 22233467889999999999999999999999 66666655
Q ss_pred hhccCCC---CceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEE
Q 040515 158 FSDHATS---GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAAL 232 (251)
Q Consensus 158 ~~~~~~~---~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (251)
......+ ...||+..++ .+|||.||+|+.+++++++||+..- .++++
T Consensus 331 ~~~e~lg~~~~~~~vN~~GG~la~GhP~gAtG~~~~~el~~qL~~~~----------------------------~~~~~ 382 (401)
T PRK08131 331 GCLKGLGVDFDDPRVNPNGGAIAVGHPLGASGARLALTAARELQRRG----------------------------KRYAV 382 (401)
T ss_pred HHHHHcCCCCCCCCccCCccHHhcCCchhhhHHHHHHHHHHHHHhcC----------------------------CCceE
Confidence 4211111 2478999999 5799999999999999999998621 24466
Q ss_pred EecccccceeeeeEeeec
Q 040515 233 SNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 233 v~~~g~gG~~~~~vl~~~ 250 (251)
+..+..+|...++|||+.
T Consensus 383 ~~~~~ggg~g~a~i~e~~ 400 (401)
T PRK08131 383 VSLCIGVGQGLAMVIERV 400 (401)
T ss_pred EEEEecCChhhEEEEEec
Confidence 666777888899999874
|
|
| >PRK07661 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=168.15 Aligned_cols=129 Identities=24% Similarity=0.343 Sum_probs=98.6
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|+|++...+. +.....+...+++++|+++||+++|||+||+| |.++...+
T Consensus 259 s~~~A~~~g~~~~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~did~~ei~----------d~f~~~~l 323 (391)
T PRK07661 259 DREKAESDGLKPLAKFRSFAVAGVP-----PEVMGIGPIAAIPKALKLAGLELSDIGLFELN----------EAFASQSI 323 (391)
T ss_pred cHHHHHHCCCCceEEEEEEEEecCC-----CcccchHHHHHHHHHHHHcCCCHHHCCEEEeC----------CHHHHHHH
Confidence 6778889999999999999988642 22334467889999999999999999999999 44444333
Q ss_pred hh--ccC-CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FS--DHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~--~~~-~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
.. ... ...++.+...+..+|||.+|||+.+++++++||++ .+.++++.+
T Consensus 324 ~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~qL~~----------------------------~~~~~g~~~ 375 (391)
T PRK07661 324 QVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHEMKR----------------------------RNEQFGIVT 375 (391)
T ss_pred HHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHHHHh----------------------------cCCCeEEEE
Confidence 21 111 11234444455578999999999999999999975 124689999
Q ss_pred cccccceeeeeEeee
Q 040515 235 SFGFGGTNASLLFTK 249 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~ 249 (251)
.+..||...++|||+
T Consensus 376 ~c~~gg~g~a~~~e~ 390 (391)
T PRK07661 376 MCIGGGMGAAGVFEL 390 (391)
T ss_pred EccccChhhEEEEEe
Confidence 999999999999986
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=169.83 Aligned_cols=132 Identities=23% Similarity=0.344 Sum_probs=99.6
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++..++... ....+...+++++|+++||+|+|||++|+|++++.. |...++.
T Consensus 255 s~~~a~~~~~~~~~~I~g~~~~~~~~~-----~~~~~~~~a~~~a~~~Agi~~~did~~e~~d~f~~~----~~~~~e~- 324 (386)
T cd00751 255 SEEKAKELGLKPLARIVGYAVAGVDPA-----IMGIGPVPAIPKALKRAGLTLDDIDLIEINEAFAAQ----ALACLKE- 324 (386)
T ss_pred cHHHHHHCCCCeeEEEEEEEEccCCCc-----ccchhHHHHHHHHHHHcCCCHHHcCEEEeechhHHH----HHHHHHH-
Confidence 667888889999999999998876432 233456789999999999999999999999554422 3332222
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-.. .++++...+.++||+.+|+|+.+++++++||+.. ..++++++..+
T Consensus 325 lg~~~--~pvn~~GG~l~~Gh~~gasG~~~~~e~~~qL~g~----------------------------~~~~gl~~~~~ 374 (386)
T cd00751 325 LGLDP--EKVNVNGGAIALGHPLGASGARIVVTLLHELKRR----------------------------GGRYGLATMCI 374 (386)
T ss_pred hCCCh--hhcCCCcchHhhCccHHHHHHHHHHHHHHHHHhc----------------------------CCCEEEEEEcc
Confidence 22111 1233333444789999999999999999999862 35789999999
Q ss_pred ccceeeeeEeee
Q 040515 238 FGGTNASLLFTK 249 (251)
Q Consensus 238 ~gG~~~~~vl~~ 249 (251)
.||..+++|||+
T Consensus 375 ~gg~g~~~~ie~ 386 (386)
T cd00751 375 GGGQGAAMVIER 386 (386)
T ss_pred cccceEEEEEEC
Confidence 999999999985
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=168.69 Aligned_cols=129 Identities=24% Similarity=0.352 Sum_probs=103.8
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++...+ .|.....+...+++++|+++|++|+|||++|.| |++++..+
T Consensus 260 s~~~A~~~g~~~~~~i~g~~~~~~-----~~~~~~~~~~~a~~~al~~agl~~~Did~~ei~----------eafa~~~l 324 (392)
T PRK07108 260 NAKVAEREGLQPLGIFRGFAVAGC-----EPDEMGIGPVFAVPKLLKQAGLKVDDIDLWELN----------EAFAVQVL 324 (392)
T ss_pred cHHHHHHCCCCceEEEEEEEEecc-----CCcccchhHHHHHHHHHHHcCCCHHHcCchHhh----------hHHHHHHH
Confidence 667888889899999999998763 233444567899999999999999999999999 99999888
Q ss_pred hhccCCC---CceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FSDHATS---GSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~~~~~~---~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
+.-...+ .++.++..+-.+|||.||+|+..++.++.+|++ .+.++++++
T Consensus 325 ~~~e~lg~~~~~vN~~GG~~a~GHp~gatG~r~~~~l~~~l~~----------------------------~~~~~g~~~ 376 (392)
T PRK07108 325 YCRDTLGIPMDRLNVNGGAIAVGHPYGVSGARLTGHALIEGKR----------------------------RGAKYVVVT 376 (392)
T ss_pred HHHHhcCCCccccCCCCChHHhCcchhhhHHHHHHHHHHHHHh----------------------------hCCCEEEEE
Confidence 7532211 234444444578999999999999999999975 124689999
Q ss_pred cccccceeeeeEeee
Q 040515 235 SFGFGGTNASLLFTK 249 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~ 249 (251)
.+..||...++|||+
T Consensus 377 ~c~~gg~g~a~~ie~ 391 (392)
T PRK07108 377 MCIGGGQGAAGLFEV 391 (392)
T ss_pred EccccChhhEEEEEe
Confidence 999999999999986
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=166.60 Aligned_cols=229 Identities=17% Similarity=0.236 Sum_probs=144.4
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhh--------------------hhcc----c
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKS--------------------RALT----T 57 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~--------------------~~l~----~ 57 (251)
|+++|+.+|+|++.||..|+++|++|.+|++||+|+|++.+.......... +.+. +
T Consensus 91 ~~~~v~~~~aSg~~ai~~A~~~I~sG~~~~vLv~G~e~~s~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~al~a~ry~~ 170 (430)
T PRK06365 91 PSKRIEGGGATGGLAFQAGYEEIASGRMDCVAVYGFETMSHVNTWKGNEFIALASDTNFDYPLGGFYTGYYAMMAVRHMY 170 (430)
T ss_pred ceEEEeCCcHHHHHHHHHHHHHHHcCCCCEEEEEEeeecccccchhhhhhhcccccccccccccCccHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999986653211000000 0000 0
Q ss_pred ccCCCCCC------------cccccccC---------------------------CCcc------chhhhhhcCCeEEEE
Q 040515 58 KYNGTPQE------------ASRPFDCG---------------------------RDGF------ELEHAKKRGAKIYAE 92 (251)
Q Consensus 58 ~~~~~~~~------------~~~~f~~~---------------------------~~g~------~~~~A~~~g~~~~a~ 92 (251)
.++.+.+. ...||... .+|- +++.|++.+.++ .+
T Consensus 171 ~yG~t~e~la~vav~~~~~A~~NP~A~~~~~~t~e~v~~s~~i~~Plt~~d~~~~sDGAaAvvl~See~A~~l~~~p-v~ 249 (430)
T PRK06365 171 EFGTTVEQLAKVSVKNHGNAIHNPFAQSPMKITVEDVRKSPMVSYPLTRLDVCAMSDGAACAILASEDKAFEITDKP-VL 249 (430)
T ss_pred HHCCCHHHHHHHHHHHHHHHhhCcHhhcCCCCCHHHHhcCCccccCcchhhcCCcCCceEEEEEecHHHHHhcCCCC-eE
Confidence 00000000 00010000 0110 556676666555 45
Q ss_pred EeeeeecCCCCCCCC----------------------C-CCChHHHHHHHHHHHHHcCCC--CCCccEEEecCCCCcCCc
Q 040515 93 VRGYGMSGDAHHITQ----------------------P-HIDGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 93 i~g~~~~~~~~~~~~----------------------~-~~~~~~~~~a~~~al~~Agi~--~~dId~i~~h~~gt~~~D 147 (251)
|++++..+++..... + .........+++++|+++||+ ++|||++|+|+..+..
T Consensus 250 i~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~AGl~~~~~DiD~~Ei~D~Fa~~-- 327 (430)
T PRK06365 250 IKAIGTGSDTLRLADRPFGEVPLLPNESPDDYKDLRYPGVHSFRAGRMAAKEAYEMAGITDPLNDLDLIELHDAYTSS-- 327 (430)
T ss_pred EEEEEEeccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCCCHHHCCEEEeecCCcHH--
Confidence 666665544321110 0 012234568999999999997 7999999999887766
Q ss_pred HHHHHHHHHH-hhc------------cCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 148 TVEATAIRTV-FSD------------HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 148 ~~E~~a~~~~-~~~------------~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
|...++.+ |.. ...++++||+...+. .||+.||+|+.+++++++||+...-+..
T Consensus 328 --~l~~lE~lGl~~~Ge~~~~~~~G~~~~~G~~piNt~GG~la~Ghp~GatG~~~~~e~~~QLrG~a~~~~--------- 396 (430)
T PRK06365 328 --EIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVNPSGGLLAAGHAVGATGIMQAVFMFWQLQGRIKKHF--------- 396 (430)
T ss_pred --HHHHHHHcCCCCCCchHHHHHCCCcCCCCCccccCCCchhcCCCcccHHHHHHHHHHHHHHhcccCCCC---------
Confidence 66666555 111 123456899998885 5999999999999999999998541100
Q ss_pred CCCCCCcccc-CCCCCCcEEEEeccc-ccceeeeeEeeecC
Q 040515 213 FNDNFMPLTA-SKDMPISAALSNSFG-FGGTNASLLFTKCQ 251 (251)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~~~lv~~~g-~gG~~~~~vl~~~~ 251 (251)
- .. .|..+.+.+++++.| .+..+.++||++++
T Consensus 397 ------~-~~~rQv~~a~~~l~~~~gg~~~~~~~~vl~~~~ 430 (430)
T PRK06365 397 ------H-DDYLQVKNAKRGLIHSHAGTGTYVTVTILEAPK 430 (430)
T ss_pred ------C-cccccCCCccEEEEecCCcccceEEEEEEecCC
Confidence 0 01 244567789999887 44567778888764
|
|
| >PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-21 Score=166.43 Aligned_cols=133 Identities=22% Similarity=0.278 Sum_probs=99.5
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|+|++.+..... ........+++++|+++|++|+|||++|+|...+.. |...++.+
T Consensus 252 s~~~A~~~g~~p~~~I~g~~~~~~~~~-----~~~~~~~~a~~~al~~Agl~~~DId~~El~d~F~~~----~l~~~e~l 322 (387)
T PRK08947 252 SESRAKELGLKPRARIRSMAVAGCDPS-----IMGYGPVPATQKALKRAGLSISDIDVFELNEAFAAQ----SLPCLKDL 322 (387)
T ss_pred cHHHHHHCCCCccEEEEEEEEcCcCcc-----cccccHHHHHHHHHHHcCCCHHHCCEEEecccchHH----HHHHHHHc
Confidence 667788888888899999998743211 112235788999999999999999999999665554 55555444
Q ss_pred -hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 -FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 -~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
|... ...|++...+ .+|||.||+|+.+++.++++|+. .+.++++++
T Consensus 323 g~~~~---~~~~vN~~GG~la~GhP~GAtG~~~v~~l~~~L~~----------------------------~~~~~gl~~ 371 (387)
T PRK08947 323 GLLDK---MDEKVNLNGGAIALGHPLGCSGARISTTLLNLMER----------------------------KDAQFGLAT 371 (387)
T ss_pred CCCCC---CCCCcCCCCchhhcCCCccccHHHHHHHHHHHHHh----------------------------cCCCEEEEE
Confidence 2121 1146666666 56999999999999999999975 235789999
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
+++.+|...++||+++
T Consensus 372 ~~~g~G~g~a~~~e~~ 387 (387)
T PRK08947 372 MCIGLGQGIATVFERV 387 (387)
T ss_pred EeecccceeEEEEEeC
Confidence 9998888888998864
|
|
| >PRK08242 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=167.25 Aligned_cols=130 Identities=23% Similarity=0.212 Sum_probs=98.3
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++++.+++++|.|++...+.. .....+...+++++|+++|++++|||++|+| |+++...+
T Consensus 270 s~e~A~~~g~~p~a~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~AGl~~~DID~~ei~----------daFa~~~l 334 (402)
T PRK08242 270 SEEAGKALGLKPRARIVATATIGSDP-----TIMLTGPVPATRKALAKAGLTVDDIDLFELN----------EAFASVVL 334 (402)
T ss_pred cHHHHHHcCCCCcEEEEEEEEecCCc-----hhhcccHHHHHHHHHHHcCCCHHHCCEEEec----------chhhHHHH
Confidence 66788899988899999998875422 1123345679999999999999999999999 55444333
Q ss_pred hhccC---CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FSDHA---TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~~~~---~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
..... ...++.+...+..+|||+||+|+.+++.++++|++ .+.++++++
T Consensus 335 ~~~e~lG~~~~~vN~~GG~la~GHP~GAsG~~~~~~l~~~L~~----------------------------~~~~~g~~~ 386 (402)
T PRK08242 335 RFMQALDIPHDKVNVNGGAIAMGHPLGATGAMILGTVLDELER----------------------------RGKRTALIT 386 (402)
T ss_pred HHHHHhCCCCcCCCcCCCHHhcCCcHHHHHHHHHHHHHHHHHh----------------------------cCCCeEEEE
Confidence 21100 11235555555588999999999999999999975 234789999
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
.+..||...++|||+.
T Consensus 387 ~c~ggG~g~a~~~e~~ 402 (402)
T PRK08242 387 LCVGGGMGIATIIERV 402 (402)
T ss_pred EcccCCceeEEEEEeC
Confidence 9999999999999973
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=165.77 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=147.3
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHH---H----Hhh--------------------hhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA---G----FCK--------------------SRA 54 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~---~----~~~--------------------~~~ 54 (251)
|.++|+++|+|++.||..|+++|++|++|.+||+|+|.+....... . +.. ++.
T Consensus 72 ~~~~v~~~caSg~~ai~~A~~~I~sG~~d~vLv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 151 (391)
T PRK08256 72 PIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFDKALAELQGFDPAPPALRMFGG 151 (391)
T ss_pred CCcccccccHHHHHHHHHHHHHHHCCCCCEEEEEEEeeccccccccccccccchhhhhhhhhhhhcccccCCccHHHHHH
Confidence 7789999999999999999999999999999999999864311000 0 000 000
Q ss_pred c----ccccCCCCCC------------cccccccC---------------------------CCcc------chhhhhhc
Q 040515 55 L----TTKYNGTPQE------------ASRPFDCG---------------------------RDGF------ELEHAKKR 85 (251)
Q Consensus 55 l----~~~~~~~~~~------------~~~~f~~~---------------------------~~g~------~~~~A~~~ 85 (251)
. .+.++.+++. ...|.... .+|- +.+.|++.
T Consensus 152 ~a~~y~~~~G~t~e~~a~vav~~~~~A~~np~A~~~~~~t~e~~~~s~~i~~Pl~~~d~~~~~DGAaA~il~s~~~a~~~ 231 (391)
T PRK08256 152 AGREHMEKYGTTAETFAKIGVKARRHAANNPYAQFRDEYTLEDVLASPMIWGPLTRLQCCPPTCGAAAAIVCSEEFARKH 231 (391)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhcCChhhcCCCCCHHHHhcCCcccCCCcHhhcCCCCCCeEEEEEecHHHHHhc
Confidence 0 0000000000 00000000 0000 55667666
Q ss_pred CCeEEEEEeeeeecCCCCCCCCC-C---C-ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH-hh
Q 040515 86 GAKIYAEVRGYGMSGDAHHITQP-H---I-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FS 159 (251)
Q Consensus 86 g~~~~a~i~g~~~~~~~~~~~~~-~---~-~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~ 159 (251)
+.+++++|.|.+...+....... + . .......+++++|+++|++++|||++|+|...+.. |...++.+ |.
T Consensus 232 ~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~ag~~~~DiD~~ei~d~f~~~----~l~~le~lg~~ 307 (391)
T PRK08256 232 GLDRAVEIVAQAMTTDTPSTFDGRSMIDLVGYDMTRAAAQQVYEQAGIGPEDIDVVELHDCFSAN----ELLTYEALGLC 307 (391)
T ss_pred CCCCCEEEEEEEEeccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEeeccCCcHH----HHHHHHHcCCC
Confidence 64667899998877664322111 1 1 12345679999999999999999999999888776 66666665 22
Q ss_pred c------------cCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 160 D------------HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 160 ~------------~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
. ...++.+||+...+. +|||.+|+|+.+++++++||+.+. ...|.
T Consensus 308 ~~Ge~~~~~~~G~~~~~G~~pvN~~GG~ls~Ghp~gasG~~~~~e~~~QL~g~a---------------------g~~Qv 366 (391)
T PRK08256 308 PEGEAEKFIDDGDNTYGGRWVVNPSGGLLSKGHPLGATGLAQCAELTWQLRGTA---------------------GARQV 366 (391)
T ss_pred CCCchHHHHHCCCccCCCCeeeCCCCccccCCCCccHHHHHHHHHHHHHhcCCc---------------------CCCcC
Confidence 1 223467899999985 599999999999999999999753 23344
Q ss_pred CCCcEEEEecccccceeeeeEeee
Q 040515 226 MPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
.+.+.+++++.|.+.++...||++
T Consensus 367 ~~~~~~l~~~~G~~~~~~~~v~~~ 390 (391)
T PRK08256 367 EGARLALQHNLGLGGACVVTLYQR 390 (391)
T ss_pred CccceEEEeccccceeEEEEEEec
Confidence 567899999999665666666654
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=166.57 Aligned_cols=131 Identities=18% Similarity=0.261 Sum_probs=98.4
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.++.++|+|++..... +.....+...+++++|+++|++|+|||++|+|...+.. |...++.
T Consensus 255 see~A~~l~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~did~~ei~d~F~~~----~l~~~e~- 324 (387)
T PRK07850 255 DEDRARALGLRPRARIVAQALVGAE-----PYYHLDGPVQATAKVLEKAGMKIGDIDLVEINEAFASV----VLSWAQV- 324 (387)
T ss_pred cHHHHHHcCCCCcEEEEEEEEeccC-----chhhcchHHHHHHHHHHHcCCCHHHcCeeeecccchHH----HHHHHHH-
Confidence 6677888887788999998865421 22223456789999999999999999999999555443 3333322
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
++-. .-|++...+ .+|||.+|+|+.+++++++||+. ...++++++.
T Consensus 325 lg~~----~~pvN~~GG~la~Ghp~gatG~~~v~e~~~qL~~----------------------------~~~~~g~~~~ 372 (387)
T PRK07850 325 HEPD----MDKVNVNGGAIALGHPVGSTGARLITTALHELER----------------------------TDKSTALITM 372 (387)
T ss_pred cCCC----CCCcCCCCchhhcCCCcchhHHHHHHHHHHHHHh----------------------------cCCCeEEEEE
Confidence 2211 126666666 67999999999999999999985 1246789998
Q ss_pred ccccceeeeeEeeec
Q 040515 236 FGFGGTNASLLFTKC 250 (251)
Q Consensus 236 ~g~gG~~~~~vl~~~ 250 (251)
++.||...++|||++
T Consensus 373 c~~gg~g~a~~~e~~ 387 (387)
T PRK07850 373 CAGGALSTGTIIERI 387 (387)
T ss_pred ccccCceeEEEEEeC
Confidence 999999999999974
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-21 Score=165.20 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=96.7
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|.|++..... +.....+...+++++|+++||+|+|||++|+| |.+++..+
T Consensus 265 s~~~a~~~~~~p~~~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~agl~~~Did~~ei~----------d~fa~~~l 329 (397)
T PRK06954 265 RASTAKRLGLAPLARVVGHSTFAQA-----PSKFTTAPVGAIRKLFEKNGWRAAEVDLFEIN----------EAFAVVTM 329 (397)
T ss_pred cHHHHHHCCCCceEEEEEEEecccC-----cccccchHHHHHHHHHHHcCCCHHHCCEEehh----------hHHHHHHH
Confidence 6677888888888899987764321 11122356789999999999999999999999 66655544
Q ss_pred hhccC---CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FSDHA---TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~~~~---~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
+.-.. ...++.++.-+..+|||.||||+.+++++++||+.. ..++.+++
T Consensus 330 ~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~~~~~qL~~~----------------------------~g~~~v~~ 381 (397)
T PRK06954 330 AAMKEHGLPHEKVNVNGGACALGHPIGASGARILVTLIGALRAR----------------------------GGKRGVAS 381 (397)
T ss_pred HHHHHhCCCcccCCcCCChHHhcccHHHHHHHHHHHHHHHHHhc----------------------------CCCeEEEE
Confidence 32110 112355555556789999999999999999999862 13567888
Q ss_pred cccccceeeeeEeee
Q 040515 235 SFGFGGTNASLLFTK 249 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~ 249 (251)
.+..||...++|||+
T Consensus 382 ~c~~gg~g~a~~~e~ 396 (397)
T PRK06954 382 LCIGGGEATAMGIEL 396 (397)
T ss_pred EccccchhhEEEEEe
Confidence 889999999999986
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=167.56 Aligned_cols=133 Identities=22% Similarity=0.288 Sum_probs=100.5
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+|++++.++.... ..+.....+...+++++|+++||+|+|||+||+| |.+++..+
T Consensus 301 see~A~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~A~~~al~~Agl~~~DID~~Ei~----------daFa~~~l 365 (452)
T PLN02287 301 KRSVAMQKGLPILGVFRSFAAVG-----VDPAVMGIGPAVAIPAAVKAAGLELDDIDLFEIN----------EAFASQFV 365 (452)
T ss_pred eHHHHHHCCCCeEEEEEEEeecc-----CCCccchHHHHHHHHHHHHHcCCCHHHCCEEEec----------chHHHHHH
Confidence 66778888888999998877442 1233344567899999999999999999999999 77777776
Q ss_pred hhccCC---CCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FSDHAT---SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~~~~~---~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
+.-... ..|+.+...+-.+|||+||||+.+++.+++||++.- ...++++++
T Consensus 366 ~~~e~lG~~~~pvN~sGG~la~GHp~gAsG~~~v~~l~~qL~~~~--------------------------~~~~~gl~~ 419 (452)
T PLN02287 366 YCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRG--------------------------KDCRFGVVS 419 (452)
T ss_pred HHHHHcCCCccccCCCCcHHhccCcHHHHHHHHHHHHHHHHHhcC--------------------------CCCCeeEEE
Confidence 532111 112334444447899999999999999999997511 112689999
Q ss_pred cccccceeeeeEeeecC
Q 040515 235 SFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~~ 251 (251)
.+..||...++|||+.|
T Consensus 420 ~c~ggG~g~a~~ie~~~ 436 (452)
T PLN02287 420 MCIGTGMGAAAVFERGD 436 (452)
T ss_pred EccccCceeEEEEEecC
Confidence 99999999999999865
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=166.14 Aligned_cols=133 Identities=20% Similarity=0.288 Sum_probs=98.5
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|+|++..... +.....+...+++++|+++|++|+|||++|+|+..+.. +...++.
T Consensus 261 s~e~a~~~~~~~~~~I~g~~~~~~~-----~~~~~~~~~~a~~~a~~~Agi~~~did~~e~~d~f~~~----~l~~~e~- 330 (393)
T PRK05790 261 SEAKAKELGLTPLARIVSYAVAGVD-----PAIMGIGPVPAIRKALEKAGWSLADLDLIEINEAFAAQ----ALAVEKE- 330 (393)
T ss_pred cHHHHHHCCCCeeEEEEEEEEccCC-----CCccchhHHHHHHHHHHHcCCCHHHCCEEEeCcHHHHH----HHHHHHH-
Confidence 6677888888898999999987532 22223456789999999999999999999999433221 2222222
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-. ..|+.++.-+..+||+.||+|+.+++++++||+.. +.|+++++.++
T Consensus 331 lg~~--~~pvN~~GG~l~~Ghp~gatG~~~~~e~~~qL~~~----------------------------~~~~gl~~~~~ 380 (393)
T PRK05790 331 LGLD--PEKVNVNGGAIALGHPIGASGARILVTLLHEMKRR----------------------------GAKKGLATLCI 380 (393)
T ss_pred hCCC--hhhcCCCcchhhhCcchhhhHHHHHHHHHHHHHhc----------------------------CCCeEEEEEec
Confidence 2211 11344444555789999999999999999999862 34789999999
Q ss_pred ccceeeeeEeeec
Q 040515 238 FGGTNASLLFTKC 250 (251)
Q Consensus 238 ~gG~~~~~vl~~~ 250 (251)
.+|...++|||++
T Consensus 381 ~~g~g~~~~~e~~ 393 (393)
T PRK05790 381 GGGQGVALIVERP 393 (393)
T ss_pred cCCceeEEEEEcC
Confidence 9999999999975
|
|
| >PTZ00455 3-ketoacyl-CoA thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=163.85 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=144.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhH-----------------------H-HHh-hhhhcc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM-----------------------A-GFC-KSRALT 56 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~-----------------------~-~~~-~~~~l~ 56 (251)
|+++|+++|+||+.||..|+++|++|++|++||+|+|+++..... . .|. .+..+.
T Consensus 112 p~~~V~~~caSG~~Ai~~A~~~I~sG~~dvvlv~G~E~ms~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ym~ 191 (438)
T PTZ00455 112 PAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQRKLDDFTFPCLFAKRMKYIQ 191 (438)
T ss_pred ceeEEECcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCcchhhhhhccchhhccccccccCcchHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999986542100 0 010 011111
Q ss_pred cccC------------------CCCCCc--cccc--cc----------------------------CCCcc------chh
Q 040515 57 TKYN------------------GTPQEA--SRPF--DC----------------------------GRDGF------ELE 80 (251)
Q Consensus 57 ~~~~------------------~~~~~~--~~~f--~~----------------------------~~~g~------~~~ 80 (251)
+.++ ..|... .++. +. ..||- +++
T Consensus 192 ~~ggitrE~la~vAvka~~~a~~nP~A~~~~~~~t~~~~~d~~~~~~e~l~s~~i~~pl~~~d~s~~sDGAaA~vl~See 271 (438)
T PTZ00455 192 EHGHFTMEDTARVAAKAYANGNKNPLAHMHTRKLSLEFCTGASDKNPKFLGNETYKPFLRMTDCSQVSDGGAGLVLASEE 271 (438)
T ss_pred HHCCCCHHHHHHHHHHHHHHHhcCCHhhccCCCCCceeeccccccchhhhcCCcccCcCchhcCCCccccceEEEEecHH
Confidence 1110 011100 0011 00 01111 566
Q ss_pred hhhhcCCeE----EEEEeeeeecCCCCCCCCC--CCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHH
Q 040515 81 HAKKRGAKI----YAEVRGYGMSGDAHHITQP--HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAI 154 (251)
Q Consensus 81 ~A~~~g~~~----~a~i~g~~~~~~~~~~~~~--~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~ 154 (251)
.|++.+.++ .++|++++...+......+ ..... ...+++++|+++|++++|||++|+|...+.. |...+
T Consensus 272 ~A~~l~~~p~~~~~v~i~g~~~~~~~~~~~~~~~~~~~~-~~~A~~~a~~~AGl~~~DiD~~Ei~daFa~~----~l~~~ 346 (438)
T PTZ00455 272 GLQKMGLSPNDSRLVEIKSLACASGNLYEDPPDATRMFT-SRAAAQKALSMAGVKPSDLQVAEVHDCFTIA----ELLMY 346 (438)
T ss_pred HHHhcCCCCCCCccEEEEEEEEecCCcccCccccccchH-HHHHHHHHHHHcCCCHHHCcEeeecccChHH----HHHHH
Confidence 677777665 6899999887653211111 11222 3689999999999999999999999776665 55555
Q ss_pred HHH-hhc------------cCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCc
Q 040515 155 RTV-FSD------------HATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMP 219 (251)
Q Consensus 155 ~~~-~~~------------~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~ 219 (251)
+.+ |.. ...+++.||+...+ .+|||.+|+|+.+++++++||+...
T Consensus 347 e~lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~GHP~gAtG~~~v~e~~~QLrg~a-------------------- 406 (438)
T PTZ00455 347 EALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHPVGATGVKQIMEVYRQMKGQC-------------------- 406 (438)
T ss_pred HHcCCCCCCchHHHHhcCCcccCCCceeeCCCchhhcCCCcchHHHHHHHHHHHHHhhcc--------------------
Confidence 554 111 12235589998888 4599999999999999999998743
Q ss_pred cccCCCCC-CcEEEEeccc-ccceeeeeEeee
Q 040515 220 LTASKDMP-ISAALSNSFG-FGGTNASLLFTK 249 (251)
Q Consensus 220 ~~~~~~~~-~~~~lv~~~g-~gG~~~~~vl~~ 249 (251)
...|..+ .+.+++++.| ++..+...||+.
T Consensus 407 -g~~Qv~~~~~~gl~~~~Gg~~~~~~~~vl~~ 437 (438)
T PTZ00455 407 -GEYQMKNIPALGATLNMGGDDKTAVSTVLQN 437 (438)
T ss_pred -ccCCCCCcccEEEEeccCCCcceEEEEEEec
Confidence 2223344 5788988877 555666666653
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-21 Score=165.26 Aligned_cols=130 Identities=26% Similarity=0.348 Sum_probs=102.9
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++++.+++++|+|++...+. +.....+...+++++|+++|++|+|||++|+|...+.. |...++.+
T Consensus 262 s~~~A~~~~~~~~a~i~g~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~dId~~e~~d~f~~~----~l~~~e~l 332 (394)
T PRK06445 262 SKKAVKKYGLKPMAKIRSFGFAGVP-----PAIMGKGPVPASKKALEKAGLSVKDIDLWEINEAFAVV----VLYAIKEL 332 (394)
T ss_pred cHHHHHHCCCCceEEEEEEEEeccC-----CchhcchHHHHHHHHHHHcCCCHHHcCEEEecccchHH----HHHHHHHh
Confidence 6677888888999999999987642 22234467889999999999999999999999766554 66666555
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
.-.. -||+...+ .+|||.||+|+.+++++++||+. .+.++++++.
T Consensus 333 g~~~-----~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~----------------------------~~~~~gl~~~ 379 (394)
T PRK06445 333 GLDP-----ETVNIKGGAIAIGHPLGATGARIVGTLARQLQI----------------------------KGKDYGVATL 379 (394)
T ss_pred CCCc-----cccCCCCCHHHcCCCccchHHHHHHHHHHHHHh----------------------------cCCCEEEEEE
Confidence 2111 25666666 56999999999999999999972 2346899999
Q ss_pred ccccceeeeeEeee
Q 040515 236 FGFGGTNASLLFTK 249 (251)
Q Consensus 236 ~g~gG~~~~~vl~~ 249 (251)
++.||+..++|||+
T Consensus 380 ~~~gg~g~a~~~e~ 393 (394)
T PRK06445 380 CVGGGQGGAVVLER 393 (394)
T ss_pred cccCChhhEEEEEc
Confidence 99999999999986
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=167.53 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=100.9
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++.+.++.++|.+++...... . .........+++++|+++|++++|||++|+|...+.. |...++.+
T Consensus 278 see~A~~l~~~p~~~i~g~~~~~~~~---~-~~~~~~~~~a~~~al~~AGl~~~DiD~~Ei~d~Fa~~----~l~~~e~l 349 (428)
T PRK08963 278 SESRAKALGLTPLGYLRSYAFAAIDV---W-QDMLLGPAYATPLALERAGLTLADLTLIDMHEAFAAQ----TLANLQMF 349 (428)
T ss_pred cHHHHHHcCCCccEEEEEEecccCCc---h-hhhhhHHHHHHHHHHHHcCCCHHHCCEEEEccccHHH----HHHHHHHh
Confidence 56677788888888999988764211 0 0113345678999999999999999999999776644 44444444
Q ss_pred h---------hccCCCCce---eeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccC
Q 040515 158 F---------SDHATSGSL---AFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 223 (251)
Q Consensus 158 ~---------~~~~~~~~~---~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
- +.....+.+ ||+...+ .+|||.+|+|+.+++++++||+.+
T Consensus 350 ~~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~GhP~gasG~~~~~e~~~qLrg~------------------------- 404 (428)
T PRK08963 350 ASERFAREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLHELRRR------------------------- 404 (428)
T ss_pred cCchhhhhcccccccCCCCCCCccCCCCCHHhcCCCccccHHHHHHHHHHHHhhc-------------------------
Confidence 1 212222335 8888888 459999999999999999999862
Q ss_pred CCCCCcEEEEecccccceeeeeEeee
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+++|++.++.||...++|||+
T Consensus 405 ---~g~~gl~~~c~ggG~g~a~~ie~ 427 (428)
T PRK08963 405 ---GGGLGLTTACAAGGLGAAMVLEV 427 (428)
T ss_pred ---CCCEEEEEEccccChhhEEEEEe
Confidence 23579999999999999999986
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=163.96 Aligned_cols=131 Identities=22% Similarity=0.294 Sum_probs=96.8
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++.... .+.+......++++++|++||++|+|||++|+|.+.+.. |...+ +.
T Consensus 256 s~~~A~~~~~~~~~~i~g~g~~~~-----~~~~~~~~~~~a~~~a~~~Agi~~~did~~e~~d~fa~~----~~~~~-e~ 325 (386)
T TIGR01930 256 SEERAKELGLTPLARIVSFAVAGV-----DPEIMGLGPVPAIPKALKKAGLSISDIDLFEINEAFAAQ----VLACI-KE 325 (386)
T ss_pred cHHHHHHCCCCccEEEEEEEEecC-----CCccccccHHHHHHHHHHHcCCCHHHCCeeehcchhHHH----HHHHH-HH
Confidence 667888899999999999988753 122233455789999999999999999999999444321 22222 22
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-. ..|+.+...+..+|||.+|+|+.+++++++||+.+ +.++++++.++
T Consensus 326 lG~~--~~pvn~~GG~l~~Ghp~gasG~~~~~e~~~qL~g~----------------------------~~~~gl~~~~~ 375 (386)
T TIGR01930 326 LGLD--LEKVNVNGGAIALGHPLGASGARIVTTLLHELKRR----------------------------GGRYGLATICI 375 (386)
T ss_pred hCCC--hhhcCCCCChHhhCCcHHHHHHHHHHHHHHHHHhc----------------------------CCCEEEEEEec
Confidence 2211 11233444444889999999999999999999862 35789999999
Q ss_pred ccceeeeeEee
Q 040515 238 FGGTNASLLFT 248 (251)
Q Consensus 238 ~gG~~~~~vl~ 248 (251)
.||...++|||
T Consensus 376 ~gG~g~~~~~e 386 (386)
T TIGR01930 376 GGGQGIAVILE 386 (386)
T ss_pred cCCceEEEEeC
Confidence 99999999986
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=159.30 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=105.3
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCC-CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHIT-QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRT 156 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~-~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~ 156 (251)
+++.|++.+.++ ++|+|++..++..... .++........+++++|++|||+|+|||++|+|++.+.. |...++.
T Consensus 219 s~e~A~~l~~~~-v~i~g~~~~~~~~~~~~~~~~~~~~~~~aa~~A~~~AGi~p~DId~~ElyD~Fs~~----~l~~~E~ 293 (384)
T PRK06158 219 RADRARDLPRPP-VYVLGAAAATWHRQISSMPDLTVTAAAESGPRAFAMAGLTPADIDVVELYDAFTIN----TILFLED 293 (384)
T ss_pred cHHHHhhcCCCc-EEEEEEEEecCCcccccccchhhhHHHHHHHHHHHHcCCCHHHCcEEEecCCchHH----HHHHHHH
Confidence 566777666554 6788888776654322 222234456789999999999999999999999998876 7777766
Q ss_pred H-hhcc------------CCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccc
Q 040515 157 V-FSDH------------ATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLT 221 (251)
Q Consensus 157 ~-~~~~------------~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~ 221 (251)
+ |+.+ ..++++||+...+. .||| +++|+.+++++++||+... .
T Consensus 294 lG~~~~Ge~~~~~~~G~~~~~G~~PvN~sGG~ls~Ghp-gatG~~~~~E~~~QLrg~a---------------------g 351 (384)
T PRK06158 294 LGFCAKGEGGAFVEGGRIAPGGRLPVNTNGGGLSCVHP-GMYGLFLLIEAVRQLRGEA---------------------G 351 (384)
T ss_pred cCCCCCCcHHHHHHCCCCccCCCccccCCChhhcCCCC-chhhHHHHHHHHHHHcCCC---------------------C
Confidence 5 2221 33466899999885 5999 9999999999999999754 2
Q ss_pred cCCCCCCcEEEEecccc-cceeeeeEeee
Q 040515 222 ASKDMPISAALSNSFGF-GGTNASLLFTK 249 (251)
Q Consensus 222 ~~~~~~~~~~lv~~~g~-gG~~~~~vl~~ 249 (251)
..|..+.+.+++++.|. +..+..+||++
T Consensus 352 ~rQv~~a~~gl~~~~Gg~~~~~~~~vl~~ 380 (384)
T PRK06158 352 ERQVAGAEVALAHGNGGVLSSQATAILGT 380 (384)
T ss_pred CCcCCCCCEEEEECCCCcccceEEEEEec
Confidence 33445678999998874 34455556654
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=161.93 Aligned_cols=223 Identities=15% Similarity=0.208 Sum_probs=145.5
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh--h----------HH-----HHh---hhhhc----cc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL--S----------MA-----GFC---KSRAL----TT 57 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~--~----------~~-----~~~---~~~~l----~~ 57 (251)
|.++++++|+|++.||..|+++|++|++|.+||+|+|.+.... . +. .+. .++.+ .+
T Consensus 77 ~~~~v~~~Casg~~al~~A~~~I~sG~~~~vLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~~~~ 156 (399)
T PRK06059 77 PVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTTPKGFFAPVGGERPDDPDWLRFHLIGATNPVYFALLARRRMD 156 (399)
T ss_pred ceecccchhHHHHHHHHHHHHHHHCCCCCEEEEEEEcccCCCCCcccccccccccchhhcccCCCccHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999865310 0 00 000 00000 00
Q ss_pred ccCC------------------CCCCc------------------------ccccccCCCcc---chhhhhhc--CCeEE
Q 040515 58 KYNG------------------TPQEA------------------------SRPFDCGRDGF---ELEHAKKR--GAKIY 90 (251)
Q Consensus 58 ~~~~------------------~~~~~------------------------~~~f~~~~~g~---~~~~A~~~--g~~~~ 90 (251)
+++. .|+.. |-|..+++-.+ +.+.|++. +.++.
T Consensus 157 ~yg~s~e~~a~v~~~~~~~a~~Np~A~~r~~~t~e~v~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~~~~~ 236 (399)
T PRK06059 157 LYGATVEDFAQVKVKNARHGLLNPNARYRKEVTVEDVLASPVVSDPLRLLDICATSDGAAALIVASKSFARRHLGSVAGV 236 (399)
T ss_pred HhCCCHHHHHHHHHHHHHHHccCcHhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEecHHHHHhhccccCCc
Confidence 0000 00000 00000000001 55566666 44556
Q ss_pred EEEeeeeecCCCCC--------CC------CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHH
Q 040515 91 AEVRGYGMSGDAHH--------IT------QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRT 156 (251)
Q Consensus 91 a~i~g~~~~~~~~~--------~~------~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~ 156 (251)
++|++++...+... .. .+.+.......+++++|+++|++++|||++|+|...+.. |...++.
T Consensus 237 v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~a~~~agl~~~Did~~El~d~f~~~----~l~~~e~ 312 (399)
T PRK06059 237 PSVRAISTVTPRYPQHLPELPDIATDSTAAVPAPERVFKDQILDAAYAEAGIGPEDLSLAEVYDLSTAL----ELDWYEH 312 (399)
T ss_pred eEEEEEEEecccccccccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCcEEeecccChHH----HHHHHHH
Confidence 88999887543221 00 011111223578999999999999999999999887765 6655554
Q ss_pred H-hh------------ccCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccc
Q 040515 157 V-FS------------DHATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLT 221 (251)
Q Consensus 157 ~-~~------------~~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~ 221 (251)
+ |. ....++++||+...+. +|||.+++|+.+++++++||+... .
T Consensus 313 lGl~~~G~~~~~~~~G~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qLrg~a---------------------g 371 (399)
T PRK06059 313 LGLCPKGEAEALLRSGATTLGGRIPVNPSGGLACFGEAIPAQAIAQVCELTWQLRGQA---------------------G 371 (399)
T ss_pred cCCCCCCcHHHHHHCCCccCCCCeeecCCCccccCCccCCccHHHHHHHHHHHhccCc---------------------C
Confidence 4 11 1223456899999884 599999999999999999999743 2
Q ss_pred cCCCCCCcEEEEecccccceeeeeEeee
Q 040515 222 ASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 222 ~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..|..+.+++++++.|.+|..+++||++
T Consensus 372 ~~Qv~~a~~gl~~~~g~~g~~~~~~l~~ 399 (399)
T PRK06059 372 GRQVEGARVGITANQGLFGHGSSVIVAR 399 (399)
T ss_pred CccCCCccEEEEeccCCcccceEEEecC
Confidence 3344567889999888889999999985
|
|
| >PRK06289 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=163.01 Aligned_cols=222 Identities=19% Similarity=0.203 Sum_probs=143.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHH---HH------h------------hhhhcc----
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA---GF------C------------KSRALT---- 56 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~---~~------~------------~~~~l~---- 56 (251)
|+++|+++|+|++.||..|+.+|++|++|.+||+|+|++...+... .+ . ..+...
T Consensus 82 ~~~~v~~~Casg~~al~~Aa~~I~sG~~~~VLvvg~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~y~ 161 (403)
T PRK06289 82 PASRHEAACASGSVATLAAMADLRAGRYDVALVVGVELMKTVPGDVAAEHLGAAAWTGHEGQDARFPWPSMFARVADEYD 161 (403)
T ss_pred ceeecccccHHHHHHHHHHHHHHHcCCCCEEEEEEEEecCCCCchhhHHhhhcccccccccccCCCccHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999865421100 00 0 000000
Q ss_pred cccC------------------CCCCCccc------c-----------c-------c--cCCCcc------chhhhhhcC
Q 040515 57 TKYN------------------GTPQEASR------P-----------F-------D--CGRDGF------ELEHAKKRG 86 (251)
Q Consensus 57 ~~~~------------------~~~~~~~~------~-----------f-------~--~~~~g~------~~~~A~~~g 86 (251)
+.++ ..|.-..+ | + + ...||- +++.|++.+
T Consensus 162 ~~yG~t~e~la~va~~~~~~A~~NP~A~~~~~~~~~~~~~~d~~~s~~i~~Pl~~~d~~~~~DGAaA~vl~s~e~a~~l~ 241 (403)
T PRK06289 162 RRYGLDEEHLRAIAEINFANARRNPNAQTRGWAFPDEATNDDDATNPVVEGRLRRQDCSQVTDGGAGVVLASDAYLRDYA 241 (403)
T ss_pred HHhCCCHHHHHHHHHHHHHHHccCcHhhcCccccccccchhhhhcCCcccCCCchhhcCCCCCceeEEEEEcHHHHHHhc
Confidence 0000 00000000 0 0 0 001111 556676665
Q ss_pred C-eEEEEEeeeeecCCCCCCCC------CCC-ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH-
Q 040515 87 A-KIYAEVRGYGMSGDAHHITQ------PHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV- 157 (251)
Q Consensus 87 ~-~~~a~i~g~~~~~~~~~~~~------~~~-~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~- 157 (251)
. ++.++|+|++..++...... .++ .......+.+++|++|||+++|||++|+|+..+.. |...++.+
T Consensus 242 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~Agi~~~Didv~el~D~fa~~----~l~~le~lG 317 (403)
T PRK06289 242 DARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVRQAVLDAYRRAGVGLDDLDGFEVHDCFTPS----EYLAIDHIG 317 (403)
T ss_pred cCCCCEEEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHcCCCHHHCeEEeeeccchHH----HHHHHHHcC
Confidence 4 56689999988755432111 111 22345679999999999999999999999888776 66666665
Q ss_pred hhc------------cCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccC
Q 040515 158 FSD------------HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 223 (251)
Q Consensus 158 ~~~------------~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
|+. ...++.+||+...+. .|||.+|+|+.+++++++||+... ...
T Consensus 318 l~~~Ge~~~~v~~G~~~~~G~lpvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a---------------------g~~ 376 (403)
T PRK06289 318 LTGPGESWKAIENGEIAIGGRLPINPSGGLIGGGHPVGASGVRMLLDAAKQVTGTA---------------------GDY 376 (403)
T ss_pred CCCCCcHHHHHhcCCcccCCCeeEcCCCCccccCCCccchHHHHHHHHHHHHhccc---------------------cCc
Confidence 221 123467899999995 599999999999999999999743 223
Q ss_pred CCCCCcEEEEeccc-ccceeeeeEee
Q 040515 224 KDMPISAALSNSFG-FGGTNASLLFT 248 (251)
Q Consensus 224 ~~~~~~~~lv~~~g-~gG~~~~~vl~ 248 (251)
|....+.+++++.| .++.+..+||+
T Consensus 377 Qv~~~~~~l~~~~gg~~~~~~~~i~~ 402 (403)
T PRK06289 377 QVEGAKTFGTLNIGGSTTTTVSFVVG 402 (403)
T ss_pred cCCchheEEEEecCcccceEEEEEEe
Confidence 33455678888777 44555555553
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=161.94 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=138.3
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhH---H-----HHh----------hhhh----ccccc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---A-----GFC----------KSRA----LTTKY 59 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~---~-----~~~----------~~~~----l~~~~ 59 (251)
|+++|+.+|+|++.||++|+.+|++|++|++||+|+|++...... . .+. .... +.+.+
T Consensus 80 ~~~~v~~~c~sg~~ai~~A~~~I~sG~~d~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~y 159 (398)
T PRK06157 80 PVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMTMPNVTAPGNFAQLASAYAAKY 159 (398)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHCCCCCEEEEEEEeecccCccccccccccccchhcccccCchHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999986431100 0 000 0000 00000
Q ss_pred CCC----------------------CCC------------ccc----ccc-----cCCCcc------chhhhhhcCCeEE
Q 040515 60 NGT----------------------PQE------------ASR----PFD-----CGRDGF------ELEHAKKRGAKIY 90 (251)
Q Consensus 60 ~~~----------------------~~~------------~~~----~f~-----~~~~g~------~~~~A~~~g~~~~ 90 (251)
+.+ |+. ..+ |+. ...+|- +.+.|++.+.++.
T Consensus 160 G~t~e~~~~~~a~vav~~~~~A~~np~A~~r~~~t~e~v~~s~~v~~Pl~~~d~~~~~DGAaA~vl~s~~~A~~l~~~~~ 239 (398)
T PRK06157 160 GVSREDLKRAMAHVSVKSHANGARNPKAHLRKAVTEEQVLKAPMIAGPLGLFDCCGVSDGAAAAIVTTPEIARALGKKDP 239 (398)
T ss_pred CCCHHHHcccccHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCchhccCCCCCccEEEEEecHHHHHhhCCCCC
Confidence 000 000 000 000 001111 5566777665456
Q ss_pred EEEeeeeecCCCCCC---CCCCC-ChHHHHHHHHHHHHHcCCC--CCCccEEEecCCCCcCCcHHHHHHHHHH-hhcc--
Q 040515 91 AEVRGYGMSGDAHHI---TQPHI-DGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGDTVEATAIRTV-FSDH-- 161 (251)
Q Consensus 91 a~i~g~~~~~~~~~~---~~~~~-~~~~~~~a~~~al~~Agi~--~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~~~-- 161 (251)
++|+|++...+.... ...++ .......+.+++|++|||+ ++|||++|+|++.+.. |...++.+ |..+
T Consensus 240 v~I~g~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGl~~~~~Did~~Ei~D~Fs~~----~l~~~e~lGl~~~Ge 315 (398)
T PRK06157 240 VYVKALQLAVSNGWELQYNGWDGSYFPTTRIAARKAYREAGITDPREELSMAEVHDCFSIT----ELVTMEDLGLSERGQ 315 (398)
T ss_pred eEEEEEEEecccccccccccccccccHHHHHHHHHHHHHcCCCCchhcCCEEEEecCChHH----HHHHHHHcCCCCCCc
Confidence 899999876543211 01111 1223567899999999998 7999999999888776 66666655 2221
Q ss_pred ----------CCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCc
Q 040515 162 ----------ATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 229 (251)
Q Consensus 162 ----------~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (251)
..++++|++...+ .+|||.+|+|+.+++++++||+... ..+|..+.+
T Consensus 316 ~~~~~~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a---------------------g~rQv~~a~ 374 (398)
T PRK06157 316 AWRDVLDGFFDADGGLPCQIDGGLKCFGHPIGASGLRMLYEMYLQLLGRA---------------------GERQLKNPR 374 (398)
T ss_pred hHHHHHCCCccCCCCeeecCCCCcccCCCcccHhHHHHHHHHHHHhcccc---------------------cCccCCCcc
Confidence 2245689999998 4599999999999999999999854 234455678
Q ss_pred EEEEecccc
Q 040515 230 AALSNSFGF 238 (251)
Q Consensus 230 ~~lv~~~g~ 238 (251)
.+++++.|.
T Consensus 375 ~~l~~~~gg 383 (398)
T PRK06157 375 LALTHNLGG 383 (398)
T ss_pred EEEEeccCC
Confidence 999998873
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-20 Score=162.43 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=95.1
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++.+.++..+|.++...... +.........+++++|+++|++|+|||++|+|...+.. |...++.+
T Consensus 258 s~~~A~~l~~~p~~~i~~~~~~~~~-----~~~~~~~~~~a~~~a~~~agl~~~Did~~Ei~d~Fa~~----~l~~~e~l 328 (390)
T PRK06504 258 NERGLKALGVKPLARIHHMTVIGGD-----PVIMLEAPLPATERALKKAGMKIDDIDLYEVNEAFASV----PLAWLKAT 328 (390)
T ss_pred cHHHHHHcCCCceEEEEEEEEeecC-----chhhhccHHHHHHHHHHHcCCCHHHCCEEEecccchHH----HHHHHHHh
Confidence 5566777776776778877655431 11123355679999999999999999999999665554 44444443
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
+- . +.||+...+ .+|||.+|+|+.++..++.+|++. +.++++.++
T Consensus 329 -G~-~---~~pvN~~GG~la~Ghp~gatG~r~~~~l~~~lr~~----------------------------~~~~gl~~~ 375 (390)
T PRK06504 329 -GA-D---PERLNVNGGAIALGHPLGASGTKLMTTLVHALKQR----------------------------GKRYGLQTM 375 (390)
T ss_pred -CC-C---CCCcCCCCcHHhcCCCcchhHHHHHHHHHHHHHhh----------------------------CCCeEEEEE
Confidence 11 0 125666666 579999999999999999999851 246788888
Q ss_pred ccccceeeeeEeeec
Q 040515 236 FGFGGTNASLLFTKC 250 (251)
Q Consensus 236 ~g~gG~~~~~vl~~~ 250 (251)
++.||...++||+++
T Consensus 376 ~~ggg~g~a~ile~~ 390 (390)
T PRK06504 376 CEGGGMANVTIVERL 390 (390)
T ss_pred eecccceeEEEEEeC
Confidence 888899999999863
|
|
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-20 Score=161.12 Aligned_cols=134 Identities=16% Similarity=0.265 Sum_probs=98.5
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|.|++...+.. .....+...+++++|++|||+|+|||++|+|...+.. |...++.+
T Consensus 268 se~~A~~~~~~p~~~i~g~~~~~~~~-----~~~~~~~~~a~~~al~~Agl~~~Did~~ei~d~f~~~----~l~~~e~l 338 (404)
T PRK06205 268 TEDKAEELGLRPLARLVSWAVAGVEP-----SRMGIGPVPATEKALARAGLTLDDIDLIELNEAFAAQ----VLAVLKEW 338 (404)
T ss_pred cHHHHHHCCCCceEEEEEEEEeccCC-----ccccccHHHHHHHHHHHcCCCHHHCCEeeeccHHHHH----HHHHHHHh
Confidence 66778888888999999999876432 1122366889999999999999999999999333322 22222222
Q ss_pred -hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 -FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 -~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
|.... ..+++...+ .+|||.||+|+.+++++++||+.. ..++++++
T Consensus 339 g~~~~~---~~~vN~~GG~la~Ghp~gatG~~~v~e~~~qL~~~----------------------------~~~~gl~~ 387 (404)
T PRK06205 339 GFGADD---EERLNVNGSGISLGHPVGATGGRILATLLRELQRR----------------------------QARYGLET 387 (404)
T ss_pred CcCccc---CCCcCCCCCHHhhCCChhhhHHHHHHHHHHHHHhc----------------------------CCCeEEEE
Confidence 11110 013444444 679999999999999999999861 35789999
Q ss_pred cccccceeeeeEeeecC
Q 040515 235 SFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~~ 251 (251)
.+..||...++|||+.+
T Consensus 388 ~c~~gg~g~a~~~e~~~ 404 (404)
T PRK06205 388 MCIGGGQGLAAVFERVN 404 (404)
T ss_pred EeccCChhhEEEEEecC
Confidence 99999999999999864
|
|
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=163.38 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=99.4
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.++.++|+|++...... .........+++++|+++||+|+|||++|+| |+++...+
T Consensus 255 See~A~~l~~~pv~~I~g~~~~~~~~-----~~~~~~~~~A~~~al~~Agl~~~DiDv~Ei~----------daFa~~~l 319 (388)
T PRK06366 255 SEKAINEYGLKPIARITGYESASLDP-----LDFVEAPIPATRKLLEKQNKSIDYYDLVEHN----------EAFSIASI 319 (388)
T ss_pred cHHHHHHcCCCcCEEEEEEEEEecCH-----HHhcccHHHHHHHHHHHcCCCHHHcceeecc----------chhHHHHH
Confidence 66778877878888999998875421 1112234689999999999999999999999 55555554
Q ss_pred hhc--cCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEE
Q 040515 158 FSD--HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALS 233 (251)
Q Consensus 158 ~~~--~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 233 (251)
..- ...++. ||+...+. +|||+||||+.+++++++||+. .+.+++++
T Consensus 320 ~~le~lgl~g~-~vN~~GG~la~GHP~GatG~~~~~~l~~qL~~----------------------------~~~~~g~~ 370 (388)
T PRK06366 320 IVRDQLKIDNE-RFNVNGGAVAIGHPIGNSGSRIIVTLINALKT----------------------------RHMKTGLA 370 (388)
T ss_pred HHHHHhCCCCC-ccCCCCchhhhCCCcCCCHHHHHHHHHHHHHh----------------------------cCCCeEEE
Confidence 321 112234 78878774 5999999999999999999985 12467899
Q ss_pred ecccccceeeeeEeeecC
Q 040515 234 NSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 234 ~~~g~gG~~~~~vl~~~~ 251 (251)
+.+..||...++|||+.+
T Consensus 371 ~~c~~gg~g~a~~~e~~~ 388 (388)
T PRK06366 371 TLCHGGGGAHTLTLEMVE 388 (388)
T ss_pred EEecccChhhEEEEEecC
Confidence 999999999999999864
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=161.92 Aligned_cols=218 Identities=24% Similarity=0.294 Sum_probs=147.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHH---------------H------hhhhhcc----
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG---------------F------CKSRALT---- 56 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~---------------~------~~~~~l~---- 56 (251)
|.++++.+|+|++.+|..|+++|++|++|++||+|+|.+........ + ..++...
T Consensus 69 ~~~~v~~~c~sg~~al~~Aa~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~ 148 (375)
T cd00829 69 PATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYM 148 (375)
T ss_pred ceeeEeCccHHHHHHHHHHHHHHHhCCCCEEEEEEEeecccCcccchhhccccchhhhhcccccCCChHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999997664321000 0 0000000
Q ss_pred cccCCC------------------CCC------------------------cccccccCCCcc---chhhhhhcCCeEEE
Q 040515 57 TKYNGT------------------PQE------------------------ASRPFDCGRDGF---ELEHAKKRGAKIYA 91 (251)
Q Consensus 57 ~~~~~~------------------~~~------------------------~~~~f~~~~~g~---~~~~A~~~g~~~~a 91 (251)
+.++.+ |.. .|-++.+.+..+ +++.|++. .++++
T Consensus 149 ~~~g~t~e~~~~va~~~~~~A~~np~A~~~~~~t~d~~~~~~~i~~pl~~~~~~~~~DGaaa~vl~s~~~a~~~-~~~~~ 227 (375)
T cd00829 149 HRYGTTREDLAKVAVKNHRNAARNPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERAREL-TDRPV 227 (375)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcCChhhcCCCCCHHHHhcCCcccCCCchhhcCCCCCceeEEEEecHHHHhhc-CCCCe
Confidence 000000 000 000111111111 56667766 56789
Q ss_pred EEeeeeecCCCCCCCCCCC--ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH-hhcc-------
Q 040515 92 EVRGYGMSGDAHHITQPHI--DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FSDH------- 161 (251)
Q Consensus 92 ~i~g~~~~~~~~~~~~~~~--~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~~~------- 161 (251)
+|+|++...+......... ...+...+++++|++||++++|||++|+|++.+.. +...++.+ |...
T Consensus 228 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agl~~~did~~ei~d~F~~~----~l~~~e~lGl~~~g~~~~~~ 303 (375)
T cd00829 228 WILGVGAASDTPSLSERDDFLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIA----ELLALEDLGFCEKGEGGKLV 303 (375)
T ss_pred EEEEEEEecCCccccccccccccHHHHHHHHHHHHHcCCCHHHCCEEEecCcChHH----HHHHHHHcCCCCCCchHHHH
Confidence 9999999887765433322 45678899999999999999999999999888876 66666555 2221
Q ss_pred -----CCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 162 -----ATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 162 -----~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
..++.+||+..++. +||+.+++|+.+++++++||+... ...|..+.++++++
T Consensus 304 ~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~qlrg~a---------------------g~~qv~~~~~~l~~ 362 (375)
T cd00829 304 REGDTAIGGDLPVNTSGGLLSKGHPLGATGLAQAVEAVRQLRGEA---------------------GARQVPGARVGLAH 362 (375)
T ss_pred HCCCccCCCCccccCCCchhcCCCCccHHHHHHHHHHHHHhcCCc---------------------ccccCCCccEEEEe
Confidence 22355789999885 599999999999999999999754 23344467899998
Q ss_pred cccccceeeee
Q 040515 235 SFGFGGTNASL 245 (251)
Q Consensus 235 ~~g~gG~~~~~ 245 (251)
+.|..+.+..+
T Consensus 363 ~~gg~~~~~~~ 373 (375)
T cd00829 363 NIGGTGSAAVV 373 (375)
T ss_pred cCCCccceEEE
Confidence 88755544433
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=158.84 Aligned_cols=223 Identities=17% Similarity=0.176 Sum_probs=148.7
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh--------------------HHHH------hhhhhc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS--------------------MAGF------CKSRAL 55 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~--------------------~~~~------~~~~~l 55 (251)
|++.|+++|+|+..++..|+++|++|.+|.+||+|+|.+.+... ++.+ ...|..
T Consensus 78 ~~~~v~~~casg~~al~~A~~~I~sG~~~~vLVvg~e~~s~~~~~~~~~~~~~~~~~~g~~~~~~~al~a~~ym~~~G~~ 157 (386)
T PRK08313 78 PLIRVHTAGSVGGSTAVVAASLVQSGVYRRVLAVAWEKQSESNAMWALSIPVPFTKPVGAGAGGYFAPHVRAYIRRSGAP 157 (386)
T ss_pred ceEEEeccCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEccCCccccccccccccccccccchHHHHHHHHHHHHHHHCcC
Confidence 57789999999999999999999999999999999997543200 0000 000000
Q ss_pred cc-----------ccCCCCCC-------------------------cccccccCCCcc---chhhhhhcCCeEEEEEeee
Q 040515 56 TT-----------KYNGTPQE-------------------------ASRPFDCGRDGF---ELEHAKKRGAKIYAEVRGY 96 (251)
Q Consensus 56 ~~-----------~~~~~~~~-------------------------~~~~f~~~~~g~---~~~~A~~~g~~~~a~i~g~ 96 (251)
.+ .....|.- .|-|+.+.+-.+ +.+.|++.+.++.++|+|+
T Consensus 158 ~e~la~vav~~~~~A~~NP~A~~r~~~~t~e~v~~s~~ia~Pl~~~d~~~~~DGAaAvvl~s~e~a~~l~~~~~~~I~g~ 237 (386)
T PRK08313 158 EHIGAMVAVKDRLNGAKNPYAHLHQPDITLEKVMASQMLWDPIRFDETCPSSDGACAVVIGDEEAADAAAGRPVAWIHGT 237 (386)
T ss_pred HHHHHHHHHHHHHHHccCcHHhcCCCCCCHHHHhcCCcccCCCchhccCCCCCceEEEEEecHHHHHhcCCCCCeEEEEE
Confidence 00 00000100 011111111111 5566766666677899999
Q ss_pred eecCCCCCCC-CCCCChHHHHHHHHHHHHHcCCC--CCCccEEEecCCCCcCCcHHHHHHHHHH-hh------------c
Q 040515 97 GMSGDAHHIT-QPHIDGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGDTVEATAIRTV-FS------------D 160 (251)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~a~~~al~~Agi~--~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~------------~ 160 (251)
+..++..... .+.........+++++|++||++ ++|||++|+|++.+.. |...++.+ |. .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~Agi~~p~~Did~~el~d~F~~~----~~~~~e~lGl~~~G~~~~~~~~G~ 313 (386)
T PRK08313 238 AMRTEPLAFAGRDQVNPQAGRDAAAALWKAAGITDPRDEIDVAEIYVPFSWF----EPMWLENLGFAPEGEGWKLTEAGE 313 (386)
T ss_pred EEEecCcccccccccccHHHHHHHHHHHHHcCCCCChhhCCEEEeccCChHH----HHHHHHHcCCCCCCchHHHHHCCC
Confidence 9876654321 12223456778999999999998 6999999999888876 66666655 22 1
Q ss_pred cCCCCceeeecccCCc-cchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccc-
Q 040515 161 HATSGSLAFSSTKGAI-GHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGF- 238 (251)
Q Consensus 161 ~~~~~~~~v~~~k~~~-Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~- 238 (251)
...++++||+...+.+ ||+.+++|+.+++++++||+... ...|..+.+.+++++.|.
T Consensus 314 ~~~~G~~pvN~~GG~l~g~p~gatG~~~~~e~~~qlrG~a---------------------g~rQv~~a~~~l~~~~Gg~ 372 (386)
T PRK08313 314 TAIGGRLPVNPSGGVLSSNPIGASGMIRFAEAALQVMGKA---------------------GEHQVDGARKALGHAYGGG 372 (386)
T ss_pred cCCCCCccccCCCcccccCCCcHHHHHHHHHHHHHhcccc---------------------cCCcCCCccEEEEeccCCc
Confidence 2345678999998866 99999999999999999999854 233445678899998874
Q ss_pred cceeeeeEeee
Q 040515 239 GGTNASLLFTK 249 (251)
Q Consensus 239 gG~~~~~vl~~ 249 (251)
+...+.+||++
T Consensus 373 ~~~~~~~v~~~ 383 (386)
T PRK08313 373 SQFFSMWVVGS 383 (386)
T ss_pred ceEEEEEEEec
Confidence 34555555554
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-20 Score=158.80 Aligned_cols=220 Identities=22% Similarity=0.308 Sum_probs=134.3
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh----------HH-HHh--------------------
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------MA-GFC-------------------- 50 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~----------~~-~~~-------------------- 50 (251)
|+++|+++|+|++.||..|+++|++|++|++||+|+|+++.... +. .+.
T Consensus 77 p~~~V~~~Casg~~al~~A~~~I~sG~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~s~~~~~~~~ 156 (393)
T cd00826 77 PAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKMETSAENNAKEKHIDVLINKYGMRACPDAFALAGQAGAEAAE 156 (393)
T ss_pred cEEEecchhHHHHHHHHHHHHHHHCCCCCEEEEEeeeccccCcccccccchhHHHHHHhCChhhccHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998653210 00 000
Q ss_pred hhhhccc-------cc-------CCCCCCc------------cccccc------------CCCcc------chhhhhhcC
Q 040515 51 KSRALTT-------KY-------NGTPQEA------------SRPFDC------------GRDGF------ELEHAKKRG 86 (251)
Q Consensus 51 ~~~~l~~-------~~-------~~~~~~~------------~~~f~~------------~~~g~------~~~~A~~~g 86 (251)
..+...+ .. ...|.-. .+|... -.+|- +++.|++.+
T Consensus 157 ~~G~~~e~~a~v~~~~~~~~~~a~~np~a~~~~~~t~e~~~~~~~i~~~~~pl~~~~~~~~~DGAAA~vl~S~~~a~~l~ 236 (393)
T cd00826 157 KDGRFKDEFAKFGVKGRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNACGLNDGAAAAILMSEAEAQKHG 236 (393)
T ss_pred HcCCCHHHEEEEEEecCCCCEEEecCCCCCCCCCCCHHHHhcCCCccCCCCCEechhcCCcCCCeEEEEEecHHHHHHcC
Confidence 0000000 00 0001000 001000 01111 556666655
Q ss_pred C-eEEEEEeeeeecCCCCC-CCCCC----CChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH-hh
Q 040515 87 A-KIYAEVRGYGMSGDAHH-ITQPH----IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FS 159 (251)
Q Consensus 87 ~-~~~a~i~g~~~~~~~~~-~~~~~----~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~ 159 (251)
. ....+|++.+...+... ...+. ........+++++|++|||+++|||++|+|...+.. |...++.+ |.
T Consensus 237 l~~~~v~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~al~~Agi~~~DID~~Ei~d~Fa~~----~l~~~e~lgl~ 312 (393)
T cd00826 237 LQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEAARKALEKAGLGIGDLDLIEAHDAFAAN----ACATNEALGLC 312 (393)
T ss_pred CcccccccceEEEEEeeeccccCccccccccceeHHHHHHHHHHHcCCCHHHcCeeehhhhhHHH----HHHHHHHhCCC
Confidence 2 12245555444333211 11111 223456789999999999999999999999554443 44444443 11
Q ss_pred c------------cCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 160 D------------HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 160 ~------------~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
. ...++.+||+...+. +|||.||+|+.+++++++||+... ...|.
T Consensus 313 ~~g~~~~~~~~g~~~~~G~~pvN~~GG~la~GhP~gAtG~~~~~e~~~qL~g~a---------------------g~~q~ 371 (393)
T cd00826 313 PEGQGGALVDRGDNTYGGKSIINPNGGAIAIGHPIGASGAAICAELCFELKGEA---------------------GKRQG 371 (393)
T ss_pred cccchhhhhhcCccccCCcceECCCCchhhcCCCccccHHHHHHHHHHHHhhhh---------------------ccccC
Confidence 1 122345899999884 599999999999999999998743 22334
Q ss_pred CCCcEEEEecccccceeeeeEee
Q 040515 226 MPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+++++++.| |...++|++
T Consensus 372 ~~~~~~~~~~~G--g~g~a~~~~ 392 (393)
T cd00826 372 AGAGLALLCIGG--GGGAAMCIE 392 (393)
T ss_pred CCcCEEEEEcCC--CceeEEEEe
Confidence 456788887766 456667765
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=156.60 Aligned_cols=220 Identities=16% Similarity=0.162 Sum_probs=142.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh----H--------------------HHHhhhhhccc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----M--------------------AGFCKSRALTT 57 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~----~--------------------~~~~~~~~l~~ 57 (251)
|++.|+++|+|+..+|..|+++|++|.+|.+||+|+|++..... . +.+...+.+ +
T Consensus 83 ~~~~V~~~gasG~~al~~A~~~I~sG~ad~vLVvg~e~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~Al~a~rym-~ 161 (392)
T PRK06065 83 PVSRVYVGGATGVMTAIAGWYHVASGLCQKVLAVAEEKMSPARPHPQAVFRYIWDPILEKPLNPNLIWIFAMEMHRYM-A 161 (392)
T ss_pred CeEEEecCchhHHHHHHHHHHHHhCCCCCEEEEEEeecccccccchhHHHhhhccchhccCCCccHHHHHHHHHHHHH-H
Confidence 67889999999999999999999999999999999998532100 0 000000000 0
Q ss_pred ccCCC------------------CCC----------------ccccc---cc--CCCcc------chhhhhhcCCeEEEE
Q 040515 58 KYNGT------------------PQE----------------ASRPF---DC--GRDGF------ELEHAKKRGAKIYAE 92 (251)
Q Consensus 58 ~~~~~------------------~~~----------------~~~~f---~~--~~~g~------~~~~A~~~g~~~~a~ 92 (251)
+++.+ |.- -..|+ |. ..+|- +.+.|++.+.++ .+
T Consensus 162 ~yG~~~e~lA~vav~~~~~A~~NP~A~~r~~lt~e~vl~s~~ia~Pl~l~d~~~~~DGAaA~vl~s~e~A~~l~~~~-v~ 240 (392)
T PRK06065 162 TYGIKKEEIALVSVKNKRNALNNPYAQLGSKITVEDVLKSEVLVWPVQLLDVSPVSDGAAAIVLASEDLARRYTDTP-VW 240 (392)
T ss_pred HHCcCHHHHHHHHHHHHHhhccCchhhhcCCCCHHHHhcCCcccCCCchhhcCCCCCceEEEEEeCHHHHHhcCCCC-EE
Confidence 00000 000 00000 00 01111 556677666555 56
Q ss_pred EeeeeecCCCCCCCC-CCCChHHHHHHHHHHHHHcCCCC--CCccEEEecCCCCcCCcHHHHHHHHHHh-----------
Q 040515 93 VRGYGMSGDAHHITQ-PHIDGKGAILAMTRALKQSGLQS--HQVDYVNAHATSTPLGDTVEATAIRTVF----------- 158 (251)
Q Consensus 93 i~g~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~Agi~~--~dId~i~~h~~gt~~~D~~E~~a~~~~~----------- 158 (251)
|+|++...+...... ..........+.+++|+++|+++ +|||++|+|++.+.. |...++.+-
T Consensus 241 I~g~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~aGi~~p~~diD~~ei~D~Fs~~----~l~~~E~lG~~~~G~~~~~~ 316 (392)
T PRK06065 241 VEGVGWTLDNTEWPNRDLAYPRYVEFAARMAYKMAGIERPRKEIDVAEPYDPFDYK----ELHHLEGLQLAKRGEAPKLL 316 (392)
T ss_pred EEEEEEecCccccccccccccHHHHHHHHHHHHHcCCCCchhhCcEEEecCCChHH----HHHHHHHcCCCCCCcHHHHH
Confidence 899887665432111 11223445689999999999985 999999999888765 666665541
Q ss_pred --hccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC-cEEEE
Q 040515 159 --SDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI-SAALS 233 (251)
Q Consensus 159 --~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lv 233 (251)
+....++.+||+...+ .+|||.+|+|+.+++++++||+... ..+|..+. +.+++
T Consensus 317 ~~g~~~~~G~~pvN~~GG~la~Ghp~gatG~~~~~e~~~QLrg~a---------------------g~rQv~~a~~~~l~ 375 (392)
T PRK06065 317 KEGVFDIDGDIPSSPSGGLLGVGNPIAAAGLMKVISIYWQLKGTA---------------------GKMQVKKPVHTGVA 375 (392)
T ss_pred HCCCccCCCCeeecCCCccccCCCCccHHHHHHHHHHHHHHhccc---------------------cCCcCCCccceeEE
Confidence 1122345689998888 4599999999999999999999854 23344456 78999
Q ss_pred eccc-ccceeeeeEee
Q 040515 234 NSFG-FGGTNASLLFT 248 (251)
Q Consensus 234 ~~~g-~gG~~~~~vl~ 248 (251)
+++| .+..++.+||+
T Consensus 376 ~~~Gg~~~~~~~~il~ 391 (392)
T PRK06065 376 QAWGDLMQAGTVIVLR 391 (392)
T ss_pred eccccccceeEEEEec
Confidence 9887 44455555554
|
|
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=163.42 Aligned_cols=136 Identities=19% Similarity=0.265 Sum_probs=94.5
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.++.++|++++........ ........+++++|++||++++|||++|+|...+.. |...++.+
T Consensus 280 se~~A~~l~~~p~~~i~~~~~~~~~~~~----~~~~~~~~a~~~al~~Agl~~~Did~~Ei~daFa~~----~l~~~e~l 351 (430)
T TIGR02446 280 REGRAKELGMEPLGYIRSYAFTAIDVWQ----DMLMGPSYATPLALQRAGLALSDLTLIDMHEAFAAQ----TLANVQMF 351 (430)
T ss_pred cHHHHHHcCCCceEEEEEEEeeccCchH----hhcccHHHHHHHHHHHcCCCHHHCCEEEeccccHHH----HHHHHHHh
Confidence 5566777777777899988765321100 012233578999999999999999999999777665 66656555
Q ss_pred ----hhcc-----CCCCce---eeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccC
Q 040515 158 ----FSDH-----ATSGSL---AFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 223 (251)
Q Consensus 158 ----~~~~-----~~~~~~---~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
|... ...+.+ ||+...+ .+|||.+|+|+.+++++++||+.+.
T Consensus 352 g~~~~~~~~~g~~~~~G~~~~~pvN~~GG~la~GhP~gatG~~~v~e~~~qL~g~a------------------------ 407 (430)
T TIGR02446 352 ASDKFAQENLGRSKAMGEIDMSKFNVLGGSIAYGHPFAATGARMITQTLRELKRRG------------------------ 407 (430)
T ss_pred cCcchhhhcccccccCCCCCCCccCCCCCHHhcCCCccccHHHHHHHHHHHHhhcC------------------------
Confidence 2211 112234 7888888 4599999999999999999998632
Q ss_pred CCCCCcEEEEecccccceeeeeEeee
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
.++.+...++.||...++|+|+
T Consensus 408 ----g~~g~~~~~~~GG~g~a~iie~ 429 (430)
T TIGR02446 408 ----GGLGLNTACAAGGLGAAMILEV 429 (430)
T ss_pred ----CCccEEEEEecCcceEEEEEEe
Confidence 1123455556667778888875
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=161.35 Aligned_cols=130 Identities=24% Similarity=0.315 Sum_probs=99.4
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.+++++|+|++...+. +.....+...+++++|++||++++|||++|+| |.+++..+
T Consensus 273 s~e~A~~~~~~~~a~I~g~~~~~~~-----~~~~~~~~~~a~~~al~~Agi~~~did~~ei~----------d~f~~~~l 337 (406)
T PRK07851 273 SDTKARELGLTPLARIVSTGVSGLS-----PEIMGLGPVEASKQALARAGMSIDDIDLVEIN----------EAFAAQVL 337 (406)
T ss_pred cHHHHHHcCCCccEEEEEEEEccCC-----CCccchhHHHHHHHHHHHhCCCHHHCCeehhh----------hHHHHHHH
Confidence 6678888898999999999876532 22233457789999999999999999999999 65555544
Q ss_pred hh--ccC-CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FS--DHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~--~~~-~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
.. ... ...|+.++..+..+|||.|++|+.+++++++||+. .+.++++++
T Consensus 338 ~~le~lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL~~----------------------------~~~~~g~~~ 389 (406)
T PRK07851 338 PSARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNLQT----------------------------HDKTFGLET 389 (406)
T ss_pred HHHHHhCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHHHh----------------------------cCCCeEEEE
Confidence 21 100 01234445555578999999999999999999975 124679999
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
.++.||...++|||++
T Consensus 390 ~~~~gg~g~a~~~e~~ 405 (406)
T PRK07851 390 MCVGGGQGMAMVLERL 405 (406)
T ss_pred EccccChhhEEEEEec
Confidence 9999999999999986
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=159.01 Aligned_cols=134 Identities=20% Similarity=0.303 Sum_probs=95.5
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++...+.. .........+++++|+++|++|+|||++|+|+..+.. |... .+.
T Consensus 261 s~~~A~~~~~~~~a~I~g~~~~~~~~-----~~~~~~~~~a~~~al~~Agi~~~Did~~Ei~d~f~~~----~l~~-~e~ 330 (394)
T PLN02644 261 SGEKALELGLQVIAKIRGYADAAQAP-----ELFTTAPALAIPKALKHAGLEASQVDYYEINEAFSVV----ALAN-QKL 330 (394)
T ss_pred cHHHHHHCCCCeEEEEEEEEEcCCCC-----cccchhHHHHHHHHHHHcCCCHHHCCEEEeCcHHHHH----HHHH-HHH
Confidence 66778888889999999999876532 1112234579999999999999999999999333221 1111 122
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-. ..++.+..-+-.+||+.+|+|+.++++++++|+.+ ..++.+.+.++
T Consensus 331 lg~~--~~~vN~~GG~l~~Ghp~gasG~~~~~~~~~~l~~~----------------------------~~~~g~~~~~~ 380 (394)
T PLN02644 331 LGLD--PEKVNVHGGAVSLGHPIGCSGARILVTLLGVLRSK----------------------------NGKYGVAGICN 380 (394)
T ss_pred hCCC--ccccCCCCChHhhCCCHHHHHHHHHHHHHHHHHhc----------------------------CCCeEEEEEec
Confidence 2211 11233333344779999999999999999999862 23578888888
Q ss_pred ccceeeeeEeeecC
Q 040515 238 FGGTNASLLFTKCQ 251 (251)
Q Consensus 238 ~gG~~~~~vl~~~~ 251 (251)
.||...++|||+.|
T Consensus 381 ~gg~g~a~~~e~~~ 394 (394)
T PLN02644 381 GGGGASAIVVELMQ 394 (394)
T ss_pred cCCceeEEEEEecC
Confidence 89999999999864
|
|
| >PRK06690 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=152.45 Aligned_cols=207 Identities=26% Similarity=0.372 Sum_probs=142.9
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhH--HH-----Hh--hhhh----cccccC--------
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM--AG-----FC--KSRA----LTTKYN-------- 60 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~--~~-----~~--~~~~----l~~~~~-------- 60 (251)
|+++|+++|+||+.|+..|+++|++|++|++||+|+|++++.+.. .. +. .++. +.++++
T Consensus 74 p~~tV~~~CaSG~~Ai~~a~~~I~sG~~d~~l~gG~E~ms~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~ygitre~~d~ 153 (361)
T PRK06690 74 PGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRARFSPETIGDPDMGVAAEYVAERYNITREMQDE 153 (361)
T ss_pred CceehhhhhhHHHHHHHHHHHHHHCCCCCEEEEeccccccCCCcccccccCcccccCccHHHHHHHHHHHhCCCHHHHHH
Confidence 789999999999999999999999999999999999998753210 00 00 0000 000000
Q ss_pred ---------------CC---------------CCC---------cccc-cccC-----------CCcc------chhhhh
Q 040515 61 ---------------GT---------------PQE---------ASRP-FDCG-----------RDGF------ELEHAK 83 (251)
Q Consensus 61 ---------------~~---------------~~~---------~~~~-f~~~-----------~~g~------~~~~A~ 83 (251)
.. ... ..+| |+.. .+|- +.+.|+
T Consensus 154 ~A~~s~k~a~~a~~n~~~~~ei~~v~~~~d~~~r~~~~~e~ll~~l~p~~~~~g~lt~~~~~~~~DGAaAvvl~s~e~A~ 233 (361)
T PRK06690 154 YACLSYKRTLQALEKGYIHEEILSFNGLLDESIKKEMNYERIIKRTKPAFLHNGTVTAGNSCGVNDGACAVLVMEEGQAR 233 (361)
T ss_pred HHHHHHHHHHHHHHCCCCCCceecccCccccccCCCCCHHHHhhcCCCcccCCCceeccccCCCCCCeEEEEEecHHHHH
Confidence 00 000 0011 2210 1221 667788
Q ss_pred hcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCC
Q 040515 84 KRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHAT 163 (251)
Q Consensus 84 ~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~ 163 (251)
+.+.++.++|.+++..... +.....+...+++++|+++|++++|||++|+| |.+++..++.....
T Consensus 234 ~lg~~p~~~i~~~~~~~~~-----~~~~~~~~~~a~~~al~~Agl~~~Did~~ei~----------eafa~~~~~~~e~l 298 (361)
T PRK06690 234 KLGYKPVLRFVRSAVVGVD-----PNLPGTGPIFAVNKLLNEMNMKVEDIDYFEIN----------EAFASKVVACAKEL 298 (361)
T ss_pred HcCCCceEEEEEEEEeccC-----cccchhHHHHHHHHHHHHcCCCHHHcCEeeec----------chhHHHHHHHHHhc
Confidence 8888888889988765421 12224567889999999999999999999999 77777776643222
Q ss_pred C-CceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccc
Q 040515 164 S-GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGG 240 (251)
Q Consensus 164 ~-~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG 240 (251)
+ .+.+++...+ .+||+.|++|+.+++.++.+|+. .+.++++++.+..||
T Consensus 299 gl~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~ql~~----------------------------~~~~~g~~~~c~~gG 350 (361)
T PRK06690 299 QIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKR----------------------------EDMKYGIATLGIGGG 350 (361)
T ss_pred CCCchhcccCCcHHhccCchhhhHHHHHHHHHHHHHH----------------------------hCCCEEEEEEcccCc
Confidence 1 1124444444 56999999999999999999975 135778888889999
Q ss_pred eeeeeEeeecC
Q 040515 241 TNASLLFTKCQ 251 (251)
Q Consensus 241 ~~~~~vl~~~~ 251 (251)
...++|||+.+
T Consensus 351 ~g~a~~~e~~~ 361 (361)
T PRK06690 351 IGLALLFEKVE 361 (361)
T ss_pred ceeEEEEEecC
Confidence 99999999854
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-20 Score=159.10 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=93.3
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++.+.+++++|.|++....... ........+++++|+++||+|+|||++|+|...+.. |...++.
T Consensus 261 s~~~A~~~~~~p~~~i~g~~~~~~~~~-----~~~~~~~~a~~~al~~agl~~~did~~e~~d~f~~~----~l~~~e~- 330 (393)
T PRK08235 261 SEDRAKQEGRKPLATILAHTAIAVEAK-----DFPRTPGYAINALLEKTGKTVEDIDLFEINEAFAAV----ALASTEI- 330 (393)
T ss_pred cHHHHHHCCCCceEEEEEEEecccChh-----hhcchHHHHHHHHHHHhCCCHHHCCeehhcchhHHH----HHHHHHH-
Confidence 667788888899999999776543211 112244689999999999999999999999333222 2222222
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-. ..|+.+..-+-.+|||.+|+|+.+++++++||+.+. .++.+.+.+.
T Consensus 331 lg~~--~~pvN~~GG~la~Ghp~gasG~~~~~~l~~qL~~~~----------------------------~~~g~~~~c~ 380 (393)
T PRK08235 331 AGID--PEKVNVNGGAVALGHPIGASGARIIVTLIHELKRRG----------------------------GGIGIAAICS 380 (393)
T ss_pred hCCC--cccCCcCCchHHhCCcHHHHHHHHHHHHHHHHHhcC----------------------------CCeEEEEEcc
Confidence 2211 123444444447899999999999999999998621 3457887888
Q ss_pred ccceeeeeEeee
Q 040515 238 FGGTNASLLFTK 249 (251)
Q Consensus 238 ~gG~~~~~vl~~ 249 (251)
.||...++|||+
T Consensus 381 ~gG~g~a~~~e~ 392 (393)
T PRK08235 381 GGGQGDAVLIEV 392 (393)
T ss_pred cccceEEEEEEe
Confidence 889999999986
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=156.05 Aligned_cols=223 Identities=18% Similarity=0.194 Sum_probs=145.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh---h----HH------HHhh-hh--------hcc---
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL---S----MA------GFCK-SR--------ALT--- 56 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~---~----~~------~~~~-~~--------~l~--- 56 (251)
|...++++|+|+..+|..|+++|++|.+|++||+|+|++.... . +. .+.. .+ .+.
T Consensus 74 ~~~~v~~gg~s~~~a~~~A~~~I~sG~~d~vLvvg~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~Al~a~~y 153 (388)
T PRK08142 74 HVDSTETGGSSYLAHVGHAAQAIAAGKCSVALITLAGRPRSEGSSGTEPRNWGADAPDAPFEAPYGPTTHNLYAMCAMRH 153 (388)
T ss_pred eeccccCCcHHHHHHHHHHHHHHHcCCCCEEEEEeeeecccCCccccccccccccccccchhcccccccHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999743210 0 00 0000 00 000
Q ss_pred -cccCCC------------------CCC------------------------cccccccCCCcc---chhhhhhcCCeEE
Q 040515 57 -TKYNGT------------------PQE------------------------ASRPFDCGRDGF---ELEHAKKRGAKIY 90 (251)
Q Consensus 57 -~~~~~~------------------~~~------------------------~~~~f~~~~~g~---~~~~A~~~g~~~~ 90 (251)
+.++.+ |.- .|-|..+++-.+ +.+.|++.+ .+.
T Consensus 154 m~~yG~t~e~la~vav~~~~~A~~NP~A~~r~~~t~e~vl~s~~Ia~Pl~l~d~~~~~DGAaA~vl~s~~~A~~l~-~~~ 232 (388)
T PRK08142 154 MHEYGTTSEQLAWIKVAASHHAQHNPHAMLRDVVTVEDVLNSPMIADPLHRLDCCVVTDGGGALVVVRPEIARSLK-RPL 232 (388)
T ss_pred HHHHCcCHHHHHHHHHHHHHHhccCChhhcCCCCCHHHHhcCCcccCCchhhccCcccCceEEEEEecHHHHhhcC-CCC
Confidence 000000 000 000011111111 556676665 445
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH-hhcc--------
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV-FSDH-------- 161 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~-~~~~-------- 161 (251)
++|+|++..++......++........+++++|++||++|+|||++|+|++.+.. |...++.+ |+.+
T Consensus 233 v~I~g~~~~~~~~~~~~~~~~~~~~~~aa~~a~~~AGi~~~did~~elyD~Fs~~----~~~~~E~lGl~~~Ge~~~~v~ 308 (388)
T PRK08142 233 VKVLGAGEAIKGQMGGKVDLTYSGAAWSGPAAFAEAGVTPADIKYASIYDSFTIT----VLMQLEDLGFCKKGEGGKFVA 308 (388)
T ss_pred EEEEEEEEecCCccccCcccccHHHHHHHHHHHHHcCCCHHHCCEEEEeccchHH----HHHHHHHcCCCCCCchHHHHH
Confidence 8999999887754333333344556789999999999999999999999998876 77777665 2211
Q ss_pred ----CC-CCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 162 ----AT-SGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 162 ----~~-~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
.. ++.+||+...+. .|||.+|+|+.+++++++||+...- ...|..+.+++|++
T Consensus 309 ~g~~~~~~G~lPvN~sGG~l~~G~p~gatG~~~~~E~~~QLrG~ag--------------------~~rQV~~a~~gl~~ 368 (388)
T PRK08142 309 DGNLISGVGKLPFNTDGGGLCNNHPANRGGMTKVIEAVRQLRGEAH--------------------PAVQVPNCDLALAH 368 (388)
T ss_pred CCCcccCCCCccccCCChhhcCCCcCcccHHHHHHHHHHHHcCCCC--------------------CCCCCCCCcEEEEe
Confidence 11 256899888885 4899999999999999999997430 12244567899999
Q ss_pred cccc-cc---eeeeeEeee
Q 040515 235 SFGF-GG---TNASLLFTK 249 (251)
Q Consensus 235 ~~g~-gG---~~~~~vl~~ 249 (251)
+.|. .| .++.+||++
T Consensus 369 ~~Gg~~~~~~~~~~~vl~~ 387 (388)
T PRK08142 369 GTGGLLGSRHGSATLILER 387 (388)
T ss_pred CCCCCCcCCCceEEEEEec
Confidence 8873 22 335666654
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=157.24 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=96.0
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++.+.+++++|+++....+... ....+...+++++|+++|++++|||++|+|...+.. |...++.+
T Consensus 250 s~e~a~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~a~~~a~~~agi~~~did~~e~~d~Fa~~----~~~~~e~l 320 (382)
T PRK07801 250 SERAVKRHGLTPRARIHHLSVRGDDPV-----FMLTAPIPATRYALEKTGLSIDDIDVVEINEAFAPV----VLAWLKET 320 (382)
T ss_pred cHHHHHHCCCCccEEEEEEEEecCChH-----hhccChHHHHHHHHHHcCCCHHHcCEeeecccchHH----HHHHHHHh
Confidence 667788888778889998776553211 011233578999999999999999999999655544 44444443
Q ss_pred hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 158 FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
+ .. +-||+...+ .+|||.+|+|+.+++++++||+.. +.++++.++
T Consensus 321 -G-~~---~~pvN~~GG~l~~Ghp~gasG~~~~~e~~~qL~~~----------------------------~~~~gl~~~ 367 (382)
T PRK07801 321 -G-AD---PAKVNPNGGAIALGHPLGATGAKLMTTLLHELERT----------------------------GGRYGLQTM 367 (382)
T ss_pred -C-CC---chhcCCCcchhhhcCcHHHHHHHHHHHHHHHHHhc----------------------------CCCEEEEEE
Confidence 1 00 126666666 579999999999999999999861 246789999
Q ss_pred ccccceeeeeEeee
Q 040515 236 FGFGGTNASLLFTK 249 (251)
Q Consensus 236 ~g~gG~~~~~vl~~ 249 (251)
+|.||+..++||++
T Consensus 368 ~gggg~~~~~vl~~ 381 (382)
T PRK07801 368 CEGGGTANVTIIER 381 (382)
T ss_pred cccccceeEEEEEe
Confidence 99899999999986
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=153.59 Aligned_cols=145 Identities=20% Similarity=0.210 Sum_probs=104.4
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCC-ChHHHHHHHHHHHHHcCCC--CCCccEEEecCCCCcCCcHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHI-DGKGAILAMTRALKQSGLQ--SHQVDYVNAHATSTPLGDTVEATAI 154 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~-~~~~~~~a~~~al~~Agi~--~~dId~i~~h~~gt~~~D~~E~~a~ 154 (251)
+.+.|++.+.++. +|+|++...+.......+. .......+.+++|++|||+ ++|||++|+|+..+.. |...+
T Consensus 221 s~~~a~~l~~~pv-~I~g~g~~~~~~~~~~~~~~~~~~~~~Aa~~a~~~AGi~~p~~DiD~~ei~D~Ft~~----~l~~~ 295 (385)
T PRK06066 221 SEEVAKKLTDDPV-WIKGIGWSTESSNLETAELGKANYMRIAADMAYKMAGIESPRKEVDAAEVDDRYSYK----ELQHI 295 (385)
T ss_pred CHHHHHhcCCCCE-EEEEEEEecCCcccccccccccHHHHHHHHHHHHHcCCCCCHHHCcEEEEecCChHH----HHHHH
Confidence 5566776666664 8999887665322211111 2233457999999999998 6999999999888776 66666
Q ss_pred HHH-hhc------------cCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCc
Q 040515 155 RTV-FSD------------HATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMP 219 (251)
Q Consensus 155 ~~~-~~~------------~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~ 219 (251)
+.+ |.. ...++++||+...+. .|||.+|+|+.+++++++||+...
T Consensus 296 e~lG~~~~Ge~~~~v~~G~~~~~G~~PvN~~GG~la~Ghp~gatG~~~v~e~~~QL~g~A-------------------- 355 (385)
T PRK06066 296 EALRLSEEPEKDSLLREGNFDPQGELPVNPSGGHLAKGVPLEASGLSLLLDAVEYLRGEA-------------------- 355 (385)
T ss_pred HHcCCCCCCchHHHHHCCCCCCCCCccccCCCchhcCCCccchhHHHHHHHHHHHHcccc--------------------
Confidence 555 211 123467899999985 599999999999999999999854
Q ss_pred cccCCCCCCcEEEEeccc--ccceeeeeEeee
Q 040515 220 LTASKDMPISAALSNSFG--FGGTNASLLFTK 249 (251)
Q Consensus 220 ~~~~~~~~~~~~lv~~~g--~gG~~~~~vl~~ 249 (251)
..+| .+.+++++++.| +++..+.+|||+
T Consensus 356 -g~rQ-~~a~~~l~~~~gg~~~~~~~v~v~~~ 385 (385)
T PRK06066 356 -GARQ-GKAERAVVASWRGIPTLTGSVVVVER 385 (385)
T ss_pred -cccC-CCCcEEEEcCCCccCCccEEEEEEeC
Confidence 3344 567889998877 556777777774
|
|
| >KOG1390 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=150.42 Aligned_cols=105 Identities=29% Similarity=0.363 Sum_probs=79.6
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.+.+.|.+|+++|.+|+-.. ..|.....+...++.++|++||++.+|||++|.+ |+++...+
T Consensus 264 s~e~~~~~glkPLArIv~~~dAa-----~~P~df~iaP~laipk~lk~aG~~~sdVd~~EiN----------EAFs~v~l 328 (396)
T KOG1390|consen 264 SGEAAKELGLKPLARIVAWGDAA-----TEPIDFTIAPALAIPKALKKAGLEQSDVDYWEIN----------EAFSVVVL 328 (396)
T ss_pred chhhHhHcCCchHHHHhhhhhhc-----cChhhcccchHHHHHHHHHHcCcchhhhhHHhhh----------hhhhHHHH
Confidence 45667788999999999988654 2333334456788999999999999999999999 99987666
Q ss_pred hhccCCC-CceeeecccC--CccchhhhhhHHHHHHHHHHHhh
Q 040515 158 FSDHATS-GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHH 197 (251)
Q Consensus 158 ~~~~~~~-~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~ 197 (251)
-.....+ +|-.|+-..+ .+|||+|.||..-+...++.|+.
T Consensus 329 A~iK~LgldP~kVNv~GGAValGHPlG~SGaRi~~tL~~~L~~ 371 (396)
T KOG1390|consen 329 ANIKKLGLDPSKVNVHGGAVALGHPLGMSGARILVTLLHTLEQ 371 (396)
T ss_pred HHHHHhCCCHhhccCCCceeecCCCcCCcchhHHHHHHHHHHh
Confidence 4322221 2223443334 78999999999999999999986
|
|
| >PRK06025 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-19 Score=154.55 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=95.9
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+.+.|++.+.+++++|.|++...+.. .....+...+++++|+++|++++|||+||.| |+++...+
T Consensus 285 See~A~~lg~~p~a~I~g~~~a~~~p-----~~~~~~p~~Ai~~aL~~AGl~~~DID~~ei~----------eaFa~~~l 349 (417)
T PRK06025 285 SKAYAEKHGLKPRARIVAMANMGDDP-----TLMLNAPVPAAKKVLAKAGLTKDDIDLWEIN----------EAFAVVAE 349 (417)
T ss_pred cHHHHHHcCCCCcEEEEEEEEecCCc-----hhhcccHHHHHHHHHHHcCCCHHHCcEEEEc----------hHHHHHHH
Confidence 55678888888899999998876432 1122345689999999999999999999999 66655433
Q ss_pred hh--ccC-CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FS--DHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~--~~~-~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
.. ... ...++.++.-+-.+||+.|++|+.+++.++.+|+.+ +.+++++.
T Consensus 350 ~~~~~lg~~~~~vN~~GG~ia~GHp~GaTGa~~v~~ll~qL~~~----------------------------g~~~Gl~~ 401 (417)
T PRK06025 350 KFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIGTVLDELERR----------------------------GLKRGLVT 401 (417)
T ss_pred HHHHHcCCChhhccccCCHHhcCCchhHHHHHHHHHHHHHHHHh----------------------------CCCeEEEE
Confidence 21 111 112344444444889999999999999999999751 13567888
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
.++.||...++|||+.
T Consensus 402 ~c~~GG~g~A~lle~~ 417 (417)
T PRK06025 402 MCAAGGMAPAIIIERV 417 (417)
T ss_pred EEeeccceeEEEEEeC
Confidence 8899999999999873
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=156.82 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=97.9
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++.+.++.++|.++...... +.....+...+++++|+++||+++|||++|+|...+.. |...++.+
T Consensus 277 s~e~A~~~~~~p~~~i~~~~~~~~~-----~~~~~~~~~~a~~~al~~aGl~~~did~~ei~daFa~~----~l~~l~~l 347 (426)
T PRK08170 277 SEEAVKKYGLPPLGRIVDSQWAALD-----PSQMGLGPVHAATPLLQRHGLTLEDLDLWEINEAFAAQ----VLACLAAW 347 (426)
T ss_pred cHHHHHHCCCCceEEEEEeeEeeeC-----chhhcccHHHHHHHHHHHcCCCHHHcCEEEecchhHHH----HHHHHHHh
Confidence 6677888887887888888765432 22223356789999999999999999999999444332 22111111
Q ss_pred ----hhcc--------CCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccC
Q 040515 158 ----FSDH--------ATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 223 (251)
Q Consensus 158 ----~~~~--------~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
|+.. ..-.+.||+...+ .+|||.||||+.++..++.+|++
T Consensus 348 e~lGf~~~G~g~~~~~G~~~~~pvN~~GG~la~GHP~GAtG~~~~~~l~~~l~~-------------------------- 401 (426)
T PRK08170 348 ADEEYCREQLGLDGALGELDRERLNVDGGAIALGHPVGASGARIVLHLLHALKR-------------------------- 401 (426)
T ss_pred ccccchhcccccccccCCCCcceecCCCCHHHhCCCccCccHHHHHHHHHHHHh--------------------------
Confidence 1111 0012368888888 45999999999999999999986
Q ss_pred CCCCCcEEEEecccccceeeeeEeeec
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+.++++++.+..||...++|||+.
T Consensus 402 --~~~~~g~~~~c~~gg~g~a~~~e~~ 426 (426)
T PRK08170 402 --RGTKRGIAAICIGGGQGGAMLLERV 426 (426)
T ss_pred --hCCCeEEEEEecCCChhheEEEEeC
Confidence 2346899999999999999999973
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-19 Score=153.63 Aligned_cols=141 Identities=15% Similarity=0.131 Sum_probs=94.8
Q ss_pred chhhhhhcCCeEEEEE-eeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEV-RGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRT 156 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i-~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~ 156 (251)
+.+.|++.+.++..+| .+.....+.... +.........+++++|++||++++|||++|+|...+.. -..|...++.
T Consensus 275 s~~~A~~l~~~p~~~i~~~~~~~~~~~~~--~~~~~~~~~~a~~~a~~~AGl~~~Did~~Ei~d~Fa~~-~l~~l~~~e~ 351 (427)
T PRK09268 275 SEEWAAEHGLPVLAYLVDAETAAVDFVHG--KEGLLMAPAYAVPRLLARNGLTLQDFDFYEIHEAFASQ-VLATLKAWED 351 (427)
T ss_pred cHHHHHHcCCCceEEEEEEEEEcCCcccc--cchhhccHHHHHHHHHHHcCCCHHHCCEEEeccccHHH-HHHHHHHhhh
Confidence 5566777776776566 455544543211 11122355679999999999999999999999555433 0111111121
Q ss_pred H-hhccCC--------CCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 157 V-FSDHAT--------SGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 157 ~-~~~~~~--------~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
+ |+.+.. ...+||+...+. +|||.+|||+.+++++++||+.+
T Consensus 352 lG~~~~g~g~~~~~G~~~~~pvN~~GG~la~GhP~gATG~~~v~e~~~QL~~~--------------------------- 404 (427)
T PRK09268 352 EEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFAATGGRIVATLAKLLAEK--------------------------- 404 (427)
T ss_pred ccccccccccccccCcCCCcccCCCcCHHhcCCCcccchHHHHHHHHHHHHhc---------------------------
Confidence 1 111100 114788888885 59999999999999999999862
Q ss_pred CCCcEEEEecccccceeeeeEeee
Q 040515 226 MPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..++++++.+..||...++|||+
T Consensus 405 -~~~~gl~~~c~~gG~g~a~~~e~ 427 (427)
T PRK09268 405 -GSGRGLISICAAGGQGVTAILER 427 (427)
T ss_pred -CCCEEEEEEcccCchheEEEEeC
Confidence 24689999999999999999985
|
|
| >KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=137.16 Aligned_cols=221 Identities=22% Similarity=0.296 Sum_probs=142.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHH-h-------hhhhcccc---------------
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGF-C-------KSRALTTK--------------- 58 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~-~-------~~~~l~~~--------------- 58 (251)
|.+.|++.|++|..||.+|.+.|++|..|.+|+.|+|+|........+ + +...++..
T Consensus 79 pi~nvnnncatgssalflakqiiesgn~dcvlalgfekm~~gsl~~k~~dra~p~dkhi~~m~e~ygl~a~pmaaqmfgn 158 (408)
T KOG1406|consen 79 PIYNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKMERGSLSNKAADRALPVDKHISVMSETYGLEAAPMAAQMFGN 158 (408)
T ss_pred ceeeccCccccCchHHHHHHHHHhcCCcceEEeechhhhCCcccchhhhhccCcchhhHHHHHhhccCCCCcchHHHhhh
Confidence 678999999999999999999999999999999999986532110000 0 00000000
Q ss_pred --------cCC------------CCCCcccccccCCCccchhh---------------------------------hhhc
Q 040515 59 --------YNG------------TPQEASRPFDCGRDGFELEH---------------------------------AKKR 85 (251)
Q Consensus 59 --------~~~------------~~~~~~~~f~~~~~g~~~~~---------------------------------A~~~ 85 (251)
++. .......|+++-++.|++++ .++.
T Consensus 159 agkehmekygtk~ehfakiawknhkhsvnnpysqf~deysldqvm~s~~v~dflt~lqccptsdgaaaailaseafv~k~ 238 (408)
T KOG1406|consen 159 AGKEHMEKYGTKPEHFAKIAWKNHKHSVNNPYSQFRDEYSLDQVMKSPQVVDFLTKLQCCPTSDGAAAAILASEAFVRKH 238 (408)
T ss_pred hHHHHHHHhCCCHHHHhHhhhhccccccCChhHhhhhhccHHHHhcchHHHHHHHHhhcCCCCCchHHHHHhHHHHHHhc
Confidence 000 01112335555555553221 1122
Q ss_pred CCe-EEEEEeeeeecCCCCCCCCCCC-----ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHh-
Q 040515 86 GAK-IYAEVRGYGMSGDAHHITQPHI-----DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF- 158 (251)
Q Consensus 86 g~~-~~a~i~g~~~~~~~~~~~~~~~-----~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~- 158 (251)
+-. -..+|.|..+.+|..+...... -.+..+.+.++.+++.|++|.||++||+|++..+. |...++.+-
T Consensus 239 gl~~qaveivg~em~td~ps~faeks~ikm~gfdm~~~aa~~l~aksgltpndvqvielhdcfs~n----elityealgl 314 (408)
T KOG1406|consen 239 GLEKQAVEIVGMEMATDPPSTFAEKSLIKMAGFDMTRLAAKRLFAKSGLTPNDVQVIELHDCFSAN----ELITYEALGL 314 (408)
T ss_pred ccHHHHHHHHHHHhccCCchhhhhhhhhhhhcchHHHHHHHHHHHHcCCCcccceEEEeecccchh----hhhhHHHhcC
Confidence 211 1234566666666543221111 12356788899999999999999999999998775 555555441
Q ss_pred ------------hccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCC
Q 040515 159 ------------SDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASK 224 (251)
Q Consensus 159 ------------~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 224 (251)
+++..++.+.|+...+ .-|||+||+|+++.++.++|||... ..++
T Consensus 315 cpegqg~~~vdrgdntyggkwvinpsggliskghplgatglaqcaelcwqlrg~a---------------------gkrq 373 (408)
T KOG1406|consen 315 CPEGQGGEFVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGLA---------------------GKRQ 373 (408)
T ss_pred CCCCCCceeeecCCCccCceEEECCCCccccCCCcCccchHHHHHHHHHHHhhhh---------------------cccc
Confidence 2223345566666666 4599999999999999999999844 3445
Q ss_pred CCCCcEEEEecccccceeeeeEe
Q 040515 225 DMPISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 225 ~~~~~~~lv~~~g~gG~~~~~vl 247 (251)
..+.+.++.++.|.||.....+.
T Consensus 374 vpnakvalqhnlgiggavvv~ly 396 (408)
T KOG1406|consen 374 VPNAKVALQHNLGIGGAVVVALY 396 (408)
T ss_pred CCCchhhhhhccCcCceeEEEEe
Confidence 55678899999999987655543
|
|
| >KOG1389 consensus 3-oxoacyl CoA thiolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=134.41 Aligned_cols=103 Identities=26% Similarity=0.405 Sum_probs=82.8
Q ss_pred hhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhh
Q 040515 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS 159 (251)
Q Consensus 80 ~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~ 159 (251)
..|.+.|-+++++++.+.... ..|..++.+...++..+|+.+|++.+|||++|++ |++|-+.+++
T Consensus 292 s~A~qlgLPvlgvfr~f~~vG-----v~P~iMGiGPavAIp~alk~aGL~v~did~FEIN----------EAFAsQ~~yc 356 (435)
T KOG1389|consen 292 SVAMQLGLPVLGVFRDFAAVG-----VPPAIMGIGPAVAIPKALKAAGLEVDDIDLFEIN----------EAFASQALYC 356 (435)
T ss_pred hhHhhcCCceeEEeeeeeeec-----CCHHHcCCCchhhhHHHHHHcCCcccccceeehh----------HHHHHHHHHH
Confidence 456678889999998887655 3455566778899999999999999999999999 9999999998
Q ss_pred ccCCCC-ceeeecccC--CccchhhhhhHHHHHHHHHHHhh
Q 040515 160 DHATSG-SLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHH 197 (251)
Q Consensus 160 ~~~~~~-~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~ 197 (251)
.+..+. +-.|+-..+ .+|||+||+|..+++-.+.-|++
T Consensus 357 ~~KL~ld~ekVN~~GGaiAlGHPlGatGAR~VaTlL~emKr 397 (435)
T KOG1389|consen 357 RNKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKR 397 (435)
T ss_pred HHHhCCCHHHcCCCCceeeccCCcCCccHhHHHHHHHHHHh
Confidence 655431 223444444 68999999999999999998876
|
|
| >COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-17 Score=139.56 Aligned_cols=44 Identities=39% Similarity=0.555 Sum_probs=41.5
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS 45 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~ 45 (251)
|.++|+..|+||+.|+..|++.|++|.+|++|++|+|++++.+.
T Consensus 84 p~~~V~~~c~SG~~Av~~A~~~I~sG~~dvvlagG~E~mS~~~~ 127 (392)
T COG0183 84 PAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPM 127 (392)
T ss_pred CceEEeccchhHHHHHHHHHHHHHCCCCCEEEEEeeeeccCCCc
Confidence 78999999999999999999999999999999999999887653
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=131.97 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=96.6
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCC-----CCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHIT-----QPHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEA 151 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~-----~~~~-~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~ 151 (251)
+++.|++.+.++ .+|+|++..++..... .++. .......+++++|++|||+++|||++|+|++.+.. |.
T Consensus 226 see~A~~l~~~p-v~I~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~aa~~a~~~AGi~~~DiDv~El~D~Ft~~----~l 300 (386)
T PRK07855 226 SAERARDLKQRP-AVIKAAAQGSGADQYMMTSYYRDDITGLPEMGLVARQLWAQSGLGPADIDTAILYDHFTPF----VL 300 (386)
T ss_pred cHHHHhhCCCCC-EEEEEEEEecCCccccccccccccccccchHHHHHHHHHHHcCCCHHHCcEEEeccCCcHH----HH
Confidence 556677666665 5899998765432111 1111 12345579999999999999999999999998876 77
Q ss_pred HHHHHH-hh------------ccCCCCceeeecccCC--ccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCC
Q 040515 152 TAIRTV-FS------------DHATSGSLAFSSTKGA--IGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDN 216 (251)
Q Consensus 152 ~a~~~~-~~------------~~~~~~~~~v~~~k~~--~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 216 (251)
..++.+ |+ ....++.+||+...+. .||+. |+.+++++++||+...
T Consensus 301 ~~~E~lG~~~~Ge~~~~v~~G~~~~~G~lPvN~sGGll~~gh~~---G~~~i~E~~~QLrG~a----------------- 360 (386)
T PRK07855 301 MQLEELGFCGRGEAKDFIADGALELGGRLPINTHGGQLGEAYIH---GMNGIAEAVRQLRGTS----------------- 360 (386)
T ss_pred HHHHHcCCCCCCcHHHHHHCCCcccCCcccccCCCcccccCchh---hHHHHHHHHHHHhCCC-----------------
Confidence 777665 21 1223467999888875 48865 8999999999999853
Q ss_pred CCccccCCCCCCcEEEEecccccceeeeeEe
Q 040515 217 FMPLTASKDMPISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 217 ~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl 247 (251)
. .|..+.+.+|+++.|.. ..+++||
T Consensus 361 ----~-~QV~~a~~gl~~~~Gg~-~~~~~~~ 385 (386)
T PRK07855 361 ----V-NQVPGVENVLVTAGTGV-PTSGLIL 385 (386)
T ss_pred ----c-ccCCCCcEEEEECCCCc-cceeEEe
Confidence 1 23455788999987744 3344555
|
|
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-15 Score=125.66 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=91.9
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHH-cCCCCCCccEEEecCCCCcCCcHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQ-SGLQSHQVDYVNAHATSTPLGDTVEATAIRT 156 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~ 156 (251)
+.+.|++.+.++ ++|+|++...+.......+. ....++++++++ ||++|+|||++|+|+..+.. |...++.
T Consensus 215 s~~~A~~l~~~p-v~I~g~~~~~~~~~~~~~d~---~~~~~~~~a~~~aAgi~~~diD~~Ei~D~F~~~----~l~~~e~ 286 (352)
T PRK07937 215 AGDRARELRERP-AWITGIEHRIESPSLGARDL---TRSPSTALAAEAATGGDAGGVDVAELHAPFTHQ----ELILREA 286 (352)
T ss_pred cHHHHHHcCCCc-EEEEEEEEeeCCcccccccc---ccHHHHHHHHHHhcCCCHHHCCEEEEeCCChHH----HHHHHHH
Confidence 566777777777 89999988766543211111 112344556666 59999999999999777765 6655555
Q ss_pred HhhccCCCCceeeecccCCc-cchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEec
Q 040515 157 VFSDHATSGSLAFSSTKGAI-GHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNS 235 (251)
Q Consensus 157 ~~~~~~~~~~~~v~~~k~~~-Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 235 (251)
+- ..+.+||+...+.+ ||+.+|+|+.+++++++||+.+ ..+++|+++
T Consensus 287 lG----l~g~~pvN~~GG~l~ghp~gatG~~~~~e~~~QL~g~----------------------------~a~~~l~~~ 334 (352)
T PRK07937 287 LG----LGDKTKVNPSGGALAANPMFAAGLERIGEAARHIWDG----------------------------SARRALAHA 334 (352)
T ss_pred cC----CCCCCCcCCCccchhcCchhHHHHHHHHHHHHHHhcc----------------------------CCCEEEEec
Confidence 41 11337888777722 9999999999999999999873 257899988
Q ss_pred ccc--cceeeeeEeee
Q 040515 236 FGF--GGTNASLLFTK 249 (251)
Q Consensus 236 ~g~--gG~~~~~vl~~ 249 (251)
.|. +..+..+||++
T Consensus 335 ~Gg~~~~~~~v~v~~~ 350 (352)
T PRK07937 335 TSGPALQQNLVAVLEG 350 (352)
T ss_pred ccccccceEEEEEEec
Confidence 774 35566666664
|
|
| >KOG1391 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-16 Score=122.40 Aligned_cols=130 Identities=25% Similarity=0.334 Sum_probs=95.3
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++..++.+-+|+++|.++.... ..|..++.+...+++.+|+++|+...|||.||.+ |++|-+.+
T Consensus 263 sEdavK~~NlkPLARiVays~vG-----cdP~IMGIGPvPAI~~vLKksGlkl~DiDl~EvN----------EAFApQ~L 327 (396)
T KOG1391|consen 263 SEDAVKKHNLKPLARIVAYSVVG-----CDPSIMGIGPVPAISGVLKKSGLKLKDIDLVEVN----------EAFAPQYL 327 (396)
T ss_pred chhHHhhcCCchhhhhheeeeec-----cChhhccccCcHHHHHHHHHcCCcccccceEEec----------hhhchHHH
Confidence 44455566778899998887643 2344455667789999999999999999999999 88887777
Q ss_pred hhccCCCCc---eeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEe
Q 040515 158 FSDHATSGS---LAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSN 234 (251)
Q Consensus 158 ~~~~~~~~~---~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 234 (251)
...+..+.+ +.|+.-.=.+|||+++||..-....++-|+++. .++++-+
T Consensus 328 Av~r~L~ld~sKlNVNGGAIALGHPLgaSGsRIt~HlVHEL~Rr~----------------------------~KYgiGS 379 (396)
T KOG1391|consen 328 AVERSLDLDISKLNVNGGAIALGHPLGASGSRITAHLVHELRRRG----------------------------GKYGIGS 379 (396)
T ss_pred HHHHhhCCChhhccccCceeeccCccccCcchhhHHHHHHHHHcC----------------------------Ccccccc
Confidence 655544322 223222237899999999999999998887632 3555555
Q ss_pred cccccceeeeeEeeec
Q 040515 235 SFGFGGTNASLLFTKC 250 (251)
Q Consensus 235 ~~g~gG~~~~~vl~~~ 250 (251)
++=.||+..++++++.
T Consensus 380 ACIGGGQGIA~l~e~~ 395 (396)
T KOG1391|consen 380 ACIGGGQGIAVLIEST 395 (396)
T ss_pred ccccCCceEEEEEEec
Confidence 6666788888888864
|
|
| >PRK08257 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=129.23 Aligned_cols=137 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred chhhhhhcCC--eEEEEEeeeeecCCCCCCC-CCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHH
Q 040515 78 ELEHAKKRGA--KIYAEVRGYGMSGDAHHIT-QPHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATA 153 (251)
Q Consensus 78 ~~~~A~~~g~--~~~a~i~g~~~~~~~~~~~-~~~~-~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a 153 (251)
+++.|++.+. ....+|.|++..++..... .++. .......+.+++|++||++++|||++|+|.+.+.. |..+
T Consensus 253 S~e~A~~l~~~~~~~V~i~g~a~~~~~~~~~~r~~~~~~~~~~~aa~~a~~~AGi~~~Did~~elydcF~~~----~~~~ 328 (498)
T PRK08257 253 SVAKARRLGVPEDRWVYLHGGADAHDPYDILERPDLHRSPAIRAAGRRALALAGLGIDDIDAFDLYSCFPSA----VQVA 328 (498)
T ss_pred eHHHHHhcCCCCCceEEEEEEEEeeCccccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEeccCCHHH----HHHH
Confidence 5667776662 2247899998887754321 1111 23345679999999999999999999999988876 7777
Q ss_pred HHHH-hhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcE
Q 040515 154 IRTV-FSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISA 230 (251)
Q Consensus 154 ~~~~-~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (251)
++.+ |+.. +++|++...+ .+||+.+++|+.+++++++|||.+ ..++
T Consensus 329 ~E~LGl~~~---g~~pvN~sGGl~s~G~P~~a~g~~~i~E~v~QLRg~----------------------------~~~~ 377 (498)
T PRK08257 329 ARELGLDLD---DPRPLTVTGGLPFFGGPGNNYVTHAIAEMVERLRAN----------------------------PGRR 377 (498)
T ss_pred HHHcCcCCC---CCCCcCCCcChhhcCCchhhHHHHHHHHHHHHHhhc----------------------------CCCE
Confidence 7776 4433 2467877777 569999999999999999999962 1457
Q ss_pred EEEecccc-cceeeeeEeee
Q 040515 231 ALSNSFGF-GGTNASLLFTK 249 (251)
Q Consensus 231 ~lv~~~g~-gG~~~~~vl~~ 249 (251)
+|+++.|. ...++..|+++
T Consensus 378 gLv~~~GG~~~~~~~~vl~~ 397 (498)
T PRK08257 378 GLVTANGGYLTKHSVGVYST 397 (498)
T ss_pred EEEECCCChhhceEEEEEeC
Confidence 88887763 33455556554
|
|
| >PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-16 Score=111.50 Aligned_cols=119 Identities=26% Similarity=0.366 Sum_probs=86.4
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCC-CCc
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHAT-SGS 166 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~-~~~ 166 (251)
+|+++|.++.... ..|.....+...+++++|+++|++++|||++|+| |+++...+...+.. -.+
T Consensus 2 ~pla~i~~~~~~~-----~~P~~~~~~p~~A~~~al~~ag~~~~did~~Ei~----------EaFA~~~l~~~~~lg~~~ 66 (123)
T PF02803_consen 2 KPLARIVGYASAG-----VDPEDMGLGPVPAARKALERAGLTPDDIDVIEIN----------EAFAAQVLAFLEALGLDP 66 (123)
T ss_dssp -ESEEEEEEEEEE-------GGGGGGTHHHHHHHHHHHHT--GGGESEEEE------------SBHHHHHHHHHHHTTGG
T ss_pred CeEEEEEEEEEEe-----cCHHHhCchHHHHHHHHHHHhCCCccccchhhcc----------chhhhHHHHhhccccccc
Confidence 5778999988765 2344445567889999999999999999999999 77777666432111 122
Q ss_pred eeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeee
Q 040515 167 LAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 244 (251)
Q Consensus 167 ~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~ 244 (251)
.+|+...+ .+|||.||||+..++.++++|+++ ..++++.+..+.||...+
T Consensus 67 ~~vN~~GG~la~GHP~gasG~r~~~~l~~~L~~~----------------------------~~~~gla~~~~ggG~g~a 118 (123)
T PF02803_consen 67 EKVNPNGGALALGHPLGASGARLVVELAHQLRRR----------------------------GGRYGLAAICAGGGQGSA 118 (123)
T ss_dssp GGBSTT--HHHH-BHTTTHHHHHHHHHHHHHHHH----------------------------TTSEEEEEEEETTTEEEE
T ss_pred cccCcccccccccccccccccchhhhhHHHHHHh----------------------------chhhhhHHhcccceeeEE
Confidence 56777777 679999999999999999999862 246788989999999999
Q ss_pred eEeee
Q 040515 245 LLFTK 249 (251)
Q Consensus 245 ~vl~~ 249 (251)
+||||
T Consensus 119 ~ller 123 (123)
T PF02803_consen 119 VLLER 123 (123)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99987
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C .... |
| >KOG1392 consensus Acetyl-CoA acetyltransferase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-16 Score=123.95 Aligned_cols=131 Identities=22% Similarity=0.266 Sum_probs=90.5
Q ss_pred chhhhhhcCCeEEEEEeeeee-cCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGM-SGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRT 156 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~-~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~ 156 (251)
++|.|++.|-++.++++.+-. .+|.... ...+....+.+.|++||++..|||.+|.| |+++-+.
T Consensus 313 teekala~gykpkaylrdflyvsqdpkdq-----lllgpay~ipkll~kagltlkdid~feih----------eafagqi 377 (465)
T KOG1392|consen 313 TEEKALANGYKPKAYLRDFLYVSQDPKDQ-----LLLGPAYVIPKLLDKAGLTLKDIDVFEIH----------EAFAGQI 377 (465)
T ss_pred hHHHHHHcCCCchHHhhhheeeccCchhh-----eecccccccHHHHHHcCCcccccchhhhH----------HHHhHHH
Confidence 456677777777777777543 3433211 11234567889999999999999999999 8887554
Q ss_pred H----------hhcc-----CCCCceee-----ecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCC
Q 040515 157 V----------FSDH-----ATSGSLAF-----SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDN 216 (251)
Q Consensus 157 ~----------~~~~-----~~~~~~~v-----~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 216 (251)
+ |+.. ..-+..|+ +.-.-.+|||+||+|+.-.......|+.
T Consensus 378 lanlkamdsdwfck~ymgr~~kvg~ppl~k~nnwggslsighpfgatgvrl~mh~anrl~~------------------- 438 (465)
T KOG1392|consen 378 LANLKAMDSDWFCKEYMGRSGKVGRPPLDKLNNWGGSLSIGHPFGATGVRLAMHSANRLKE------------------- 438 (465)
T ss_pred HhhhhhhcchHHHHHHhcccCccCCCChHHhcccCcceecCCcccccchhhHHHHHhHHHh-------------------
Confidence 3 2211 11112222 1111278999999999888887766654
Q ss_pred CCccccCCCCCCcEEEEecccccceeeeeEeeecC
Q 040515 217 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 217 ~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
...++++|-++..||+...+++|.|+
T Consensus 439 ---------e~gqygvvaacaaggqgvamlieayp 464 (465)
T KOG1392|consen 439 ---------EKGQYGVVAACAAGGQGVAMLIEAYP 464 (465)
T ss_pred ---------hcCceeEeehhhcCCcceEEEeeccC
Confidence 23578999999999999999999985
|
|
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=114.14 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=117.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
+|+++++.+|+|++.||..|+++|++|.+|.+||+++|.+.....+ . . + ....-|.+.+....++
T Consensus 146 ~~~~~v~~aCasg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~~~---~------d-----~-~~~~lfGDgAaA~vL~ 210 (372)
T PRK07515 146 GFAFDMNVACSSATFGIQTAANAIRSGSARRVLVVNPEICSGHLNF---R------D-----R-DSHFIFGDVATAVIVE 210 (372)
T ss_pred CcEEEecchhHHHHHHHHHHHHHHHcCCCCEEEEEeeecccccccc---c------C-----C-CCCEEecCccEEEEEe
Confidence 4678999999999999999999999999999999999985422211 0 0 0 0112244443333222
Q ss_pred h---hhhcC-CeEEEEEe------------eeeecCCCCCCCCCCC----ChH--------HHHHHHHHHHHHcCCCCCC
Q 040515 81 H---AKKRG-AKIYAEVR------------GYGMSGDAHHITQPHI----DGK--------GAILAMTRALKQSGLQSHQ 132 (251)
Q Consensus 81 ~---A~~~g-~~~~a~i~------------g~~~~~~~~~~~~~~~----~~~--------~~~~a~~~al~~Agi~~~d 132 (251)
. +.+++ ..++.... |+....+......+.. ++. .+.++++++|+++|++++|
T Consensus 211 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~d 290 (372)
T PRK07515 211 RADTATSAGGFEILGTRLFTQFSNNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHLAENGLTPAD 290 (372)
T ss_pred eccccccCCCceEEEEEeecccccceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 1 11111 12333221 1110011111111110 121 2568899999999999999
Q ss_pred ccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 133 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 133 Id~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
||+|.+|.+++...|.+ ++++|+-.......+. .-..+||+.+|+=.+.+.++ +. .
T Consensus 291 Id~~~~Hq~~~~~~d~~----~~~llg~~~~~~~~~~--~~~~~GNt~sasi~~~L~~~----~~-~------------- 346 (372)
T PRK07515 291 VKRFWLHQANINMNQLI----GKKVLGRDATPEEAPV--ILDEYANTSSAGSIIAFHKH----SD-D------------- 346 (372)
T ss_pred CCEEEECCCCHHHHHHH----HHHhccCCCChhhceE--eHHhcCCchhhHHHHHHHHH----hc-c-------------
Confidence 99999999999987765 3344442211111222 23578999999865544432 11 1
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+.+.+++.+||.|-+..++||+|
T Consensus 347 ------------~~~Gd~vll~~~G~G~~~~~~ll~~ 371 (372)
T PRK07515 347 ------------LAAGDLGVICSFGAGYSIGSVIVRK 371 (372)
T ss_pred ------------CCCCCEEEEEEecccHHHHHHHhcc
Confidence 0123568888999888888888876
|
|
| >PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=107.42 Aligned_cols=75 Identities=37% Similarity=0.655 Sum_probs=63.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
||+++++++|+||+.||..|+++|++|++|++||||+|..+++..+..|..++.++.. +.++||+..++|+...
T Consensus 167 G~~~tv~~acaSgl~Al~~A~~~I~~G~~d~~lvgg~d~~~~~~~~~~~~~~~~~s~~------~~~~pf~~~~~G~v~g 240 (254)
T PF00109_consen 167 GPSYTVSTACASGLAALEAAYRAIRSGEADVALVGGVDAPLSPFILAGFSALGALSAD------GPCRPFDPFADGFVLG 240 (254)
T ss_dssp SSEEEEE-GGGHHHHHHHHHHHHHHTTSSSEEEEEEEE--SSHHHHHHHHHTTBB-TT------SGGGSTBTTB-SB-BB
T ss_pred Cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccc------ccccccCCCCCCEEEE
Confidence 8999999999999999999999999999999999999988999999999999977642 6799999999999554
Q ss_pred h
Q 040515 81 H 81 (251)
Q Consensus 81 ~ 81 (251)
+
T Consensus 241 E 241 (254)
T PF00109_consen 241 E 241 (254)
T ss_dssp -
T ss_pred C
Confidence 4
|
3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B .... |
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-11 Score=100.48 Aligned_cols=189 Identities=16% Similarity=0.168 Sum_probs=110.9
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|.++|+.+|+|++.||..|+++|++|.+|.+||+|+|.+.....+. . + .....|.+.+....++.
T Consensus 105 ~~~~v~~~Casg~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~~~~---------~-----~-~~~~~~gDGaaA~ll~~ 169 (319)
T PRK09352 105 AAFDLSAACSGFVYALSTADQFIRSGAYKNVLVIGAEKLSRIVDWT---------D-----R-STCVLFGDGAGAVVLGA 169 (319)
T ss_pred cEeeccccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhccccCcc---------c-----C-CceEEEeccceEEEEEE
Confidence 6788999999999999999999999999999999999854322100 0 0 11123433333332221
Q ss_pred hhhcCCeEEEEEeeeeecCCCCC---CCCCC-------------CC--------hHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAHH---ITQPH-------------ID--------GKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~~---~~~~~-------------~~--------~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
-.. .. +.++...+++.. ...|. .. ...+.++++++|+++|++++||+++.
T Consensus 170 ~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g~~~~di~~~~ 243 (319)
T PRK09352 170 SEE--PG----ILSTHLGSDGSYGDLLYLPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAREALEAAGLTPEDIDWLV 243 (319)
T ss_pred cCC--CC----eEEEEEEEcCCCCCeEEeCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 100 01 112222222110 00000 00 12345688999999999999999999
Q ss_pred ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
.|..+....+. +.+.++-... .+ ......+||..+|+-++.+..++ +.+.
T Consensus 244 ~h~~~~~~~~~-----~~~~lg~~~~--~~--~~~~~~~Gn~~~a~~~~~L~~~~---~~g~------------------ 293 (319)
T PRK09352 244 PHQANLRIIDA-----TAKKLGLPME--KV--VVTVDKYGNTSAASIPLALDEAV---RDGR------------------ 293 (319)
T ss_pred ECCCCHHHHHH-----HHHHhCCCHH--Hh--hhhHHhhCCHHHHHHHHHHHHHH---HcCC------------------
Confidence 99655433222 2222221110 11 12234799999999777776554 2222
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+.+..++-++|.|-+-.+++|+
T Consensus 294 -------~~~Gd~vll~s~G~G~~~~~~ll~ 317 (319)
T PRK09352 294 -------IKRGDLVLLEGFGGGLTWGAALVR 317 (319)
T ss_pred -------CCCCCEEEEEEEchhheeEEEEEE
Confidence 123466778899998888888876
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=97.38 Aligned_cols=190 Identities=16% Similarity=0.190 Sum_probs=111.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|.++|+.+|+|++.||..|+.+|++|.++.+||+++|.+.....+. .......|.+.+....++.
T Consensus 104 ~~~~v~~~C~s~~~al~~A~~~i~~g~~~~~Lvv~~e~~~~~~~~~---------------~~~~~~~~GDGAaA~lL~~ 168 (318)
T TIGR00747 104 PAFDLSAACAGFIYALSVAKQYIESGKYKTVLVVGAEKLSSTLDWT---------------DRGTCVLFGDGAGAVVLGE 168 (318)
T ss_pred cEeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcCCcC---------------CCCeEEEEecceeEEEEee
Confidence 6788999999999999999999999999999999999854332100 0011122444433333221
Q ss_pred hhhcCCeEEEEEeeeeecCCCC---CCCCC----------------C-----CChHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAH---HITQP----------------H-----IDGKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~---~~~~~----------------~-----~~~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
....+ . |......+++. ....+ . ........+++++|+++|++++||+++.
T Consensus 169 ~~~~~-~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~di~~~~ 243 (318)
T TIGR00747 169 SEDPG-G----IISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETLEANGLDPEDIDWFV 243 (318)
T ss_pred cCCCC-c----EEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 11111 1 11121111111 00000 0 0012345678899999999999999999
Q ss_pred ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
.|..+....+. +.+.++-... ++. ... ..+||+.+|+=++.+..++ +.+.+
T Consensus 244 ~h~~~~~~~~~-----~~~~lgi~~~--k~~-~~~-~~~Gn~~sas~~~~L~~~~---~~~~~----------------- 294 (318)
T TIGR00747 244 PHQANLRIIEA-----LAKRLELDMS--QVV-KTV-HKYGNTSAASIPLALDELL---RTGRI----------------- 294 (318)
T ss_pred ECCCCHHHHHH-----HHHHcCCCHH--Hee-ehH-hhhCCHHHHHHHHHHHHHH---HcCCC-----------------
Confidence 99776553222 2233322111 122 223 3599999999777765543 23221
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+.+++-++|.|.+..+++|+
T Consensus 295 --------~~Gd~vll~~~G~G~t~~~~~l~ 317 (318)
T TIGR00747 295 --------KPGDLLLLVAFGGGLTWGAALVR 317 (318)
T ss_pred --------CCCCEEEEEEEehhheeeEEEEE
Confidence 22356777789999888888876
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=97.08 Aligned_cols=194 Identities=17% Similarity=0.202 Sum_probs=115.3
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++|+.+|+|++.||..|..+|++|.++.+||+++|.......+... ....-|.+.+....++.
T Consensus 107 ~~~~v~~~C~~~~~al~~a~~~l~~g~~~~~Lvv~~e~~s~~~~~~~~---------------~~~~lfGDGAaA~ll~~ 171 (329)
T PRK07204 107 PCFDINSTCLSFITALDTISYAIECGRYKRVLIISSEISSVGLNWGQN---------------ESCILFGDGAAAVVITK 171 (329)
T ss_pred eEEEccchhHHHHHHHHHHHHHHHCCCCCEEEEEEeccccCCCCcccC---------------cceEEEecccEEEEEEE
Confidence 678899999999999999999999999999999999985432111000 01122333333332221
Q ss_pred hhhcCCeE-------------EEEEeeeeecCCCCCCCCC-------CCC--------hHHHHHHHHHHHHHcCCCCCCc
Q 040515 82 AKKRGAKI-------------YAEVRGYGMSGDAHHITQP-------HID--------GKGAILAMTRALKQSGLQSHQV 133 (251)
Q Consensus 82 A~~~g~~~-------------~a~i~g~~~~~~~~~~~~~-------~~~--------~~~~~~a~~~al~~Agi~~~dI 133 (251)
- ..+.++ +..+.+.+...+....... ..+ .....++++++|+++|++++||
T Consensus 172 ~-~~~~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~di 250 (329)
T PRK07204 172 G-DHSSRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKYLMKFIDKLLMDAGYTLADI 250 (329)
T ss_pred c-CCCCcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 0 000111 1222222211111000000 001 1124578999999999999999
Q ss_pred cEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC
Q 040515 134 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF 213 (251)
Q Consensus 134 d~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~ 213 (251)
|+|..|..+... ..++.+.++-... .+......+||+.+|+=.+.+..+ ++.+.
T Consensus 251 d~~~~H~~~~~~-----~~~i~~~l~l~~e----~~~~~~~~~Gn~~sas~~~~L~~~---~~~g~-------------- 304 (329)
T PRK07204 251 DLIVPHQASGPA-----MRLIRKKLGVDEE----RFVTIFEDHGNMIAASIPVALFEA---IKQKK-------------- 304 (329)
T ss_pred CEEEeCCCCHHH-----HHHHHHHcCCCHH----HhhhhHhhhCcHHHHHHHHHHHHH---HHcCC--------------
Confidence 999999877654 2344444432211 122455688999988866555543 23322
Q ss_pred CCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 214 NDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+.+.+++.++|.|-+..+++|+
T Consensus 305 -----------~~~Gd~vll~~~G~G~s~~~~ll~ 328 (329)
T PRK07204 305 -----------VQRGNKILLLGTSAGLSIGGILLE 328 (329)
T ss_pred -----------CCCCCEEEEEEEchhhhheeeEEe
Confidence 123467888899999999988886
|
|
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=90.15 Aligned_cols=194 Identities=18% Similarity=0.149 Sum_probs=110.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
+.+.++.+|+|++.||..|.++|++|.++.+||+++|.+........ + .....|.+.+..+.++.
T Consensus 106 ~~~~v~~~C~~~~~al~~A~~~l~~g~~~~~Lvv~~e~~s~~~~~~~--------------~-~~~~~~GDgAaA~ll~~ 170 (325)
T PRK12879 106 AAFDINAACAGFLYGLETANGLITSGLYKKVLVIGAERLSKVTDYTD--------------R-TTCILFGDGAGAVVLEA 170 (325)
T ss_pred cEEEECccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhcCcCCccc--------------c-CceEEEeecceEEEEEe
Confidence 56788999999999999999999999999999999998543221100 0 01112333333332211
Q ss_pred hhhcCCeEE-------------EEEeeeeecCCC---CCCCCCCCC--------hHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 82 AKKRGAKIY-------------AEVRGYGMSGDA---HHITQPHID--------GKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 82 A~~~g~~~~-------------a~i~g~~~~~~~---~~~~~~~~~--------~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
... +..+. ..+.+.+...+. ........+ ...+..+++++|+++|++++|||+|.
T Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g~~~~did~~~ 249 (325)
T PRK12879 171 TEN-EPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGARQVLEKAGLTKDDIDWVI 249 (325)
T ss_pred cCC-CCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 000 00010 011111110000 000000001 12345678999999999999999999
Q ss_pred ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
.|-.+... ...+.+.++-... ++.. ....+||+.+|+=.+.+..+ ++.+.
T Consensus 250 ~h~~~~~~-----~~~~~~~lg~~~~--~~~~--~~~~~Gn~~sas~~~~L~~~---~~~g~------------------ 299 (325)
T PRK12879 250 PHQANLRI-----IESLCEKLGIPME--KTLV--SVEYYGNTSAATIPLALDLA---LEQGK------------------ 299 (325)
T ss_pred ECCCCHHH-----HHHHHHHcCCCHH--Hhhh--hHhhhCchHHHHHHHHHHHH---HHcCC------------------
Confidence 99655333 2233343332111 1222 34679999999877666554 33322
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++-++|.|-+..++|++
T Consensus 300 -------~~~Gd~vll~~~G~G~~~~~~l~~ 323 (325)
T PRK12879 300 -------IKPGDTLLLYGFGAGLTWAALLVK 323 (325)
T ss_pred -------CCCCCEEEEEEEchhhhhEEEEEE
Confidence 123456788899998888888876
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=89.93 Aligned_cols=194 Identities=19% Similarity=0.196 Sum_probs=111.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
+.|.+..+|++.++||..|..+|++|.++.+||+|.|.++....+... ..+.-|.+++....++.
T Consensus 105 ~afDl~aaCsgf~yaL~~A~~~i~sG~~k~vLVVg~e~~S~~ld~~dR---------------~t~vlFgDGAgAvvl~~ 169 (323)
T COG0332 105 PAFDLQAACSGFLYALSVADGLIRSGGYKNVLVVGAETLSRILDWTDR---------------DTCVLFGDGAGAVVLEA 169 (323)
T ss_pred ceeechhhhHHHHHHHHHHHHHHHcCCCCEEEEEehhHhhccCCHhhc---------------cceEEEcCCceEEEEec
Confidence 678999999999999999999999999999999999986444333221 34445555555543322
Q ss_pred hh-hc----------CCe-EEEEEeeeeecC------------CCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 82 AK-KR----------GAK-IYAEVRGYGMSG------------DAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 82 A~-~~----------g~~-~~a~i~g~~~~~------------~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
.. +. +.. ..-.+.+....+ +|+.... .....+..+++++|++++++++|||++.
T Consensus 170 ~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk--~av~~~~~~~~~~L~~~~l~~~dId~~v 247 (323)
T COG0332 170 TEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFK--FAVRAMPKAIEEVLEKAGLTPEDIDWFV 247 (323)
T ss_pred CCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHH--HHHHHHHHHHHHHHHHcCCCHHHCCEEc
Confidence 21 10 000 000111110000 1100000 0123567889999999999999999999
Q ss_pred ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
+|=...+ =.+++.+.++-. . -.+...-..+|++.+||=.+.|.+++ +.+.
T Consensus 248 pHQan~r-----i~~~i~~~l~~~--~--~k~~~~~~~yGNtsaAsiplaL~~~~---~~g~------------------ 297 (323)
T COG0332 248 PHQANLR-----IIEAIAKKLGIP--E--EKVVVTVDKYGNTSAASIPLALDEAL---REGR------------------ 297 (323)
T ss_pred cccccHH-----HHHHHHHHcCCC--H--HHHhhHHHHhcccccchHHHHHHHHh---hhCC------------------
Confidence 9922211 112222222211 0 11112223578888887555554432 3322
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
-.+....++..||.|=+-.+++++.
T Consensus 298 -------ik~Gd~ill~~fG~Gltwg~~~~r~ 322 (323)
T COG0332 298 -------IKPGDLVLLEAFGGGLTWGAALVRW 322 (323)
T ss_pred -------CCCCCEEEEEeecCcceeeeEEEEe
Confidence 1233677788888877777777753
|
|
| >cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-09 Score=91.19 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=108.9
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++|+.+|+|++.||..|.++|++|.++.+||+++|.+..... +.. ......|.+.+....++.
T Consensus 103 ~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvv~~e~~s~~~~---~~~------------~~~~~~~GDgAaA~ll~~ 167 (320)
T cd00830 103 AAFDINAACSGFLYGLSTAAGLIRSGGAKNVLVVGAETLSRILD---WTD------------RSTAVLFGDGAGAVVLEA 167 (320)
T ss_pred cEeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEehhhccccC---ccc------------CCceEEEeccceEEEEEe
Confidence 67889999999999999999999999999999999998543321 000 011122333333332221
Q ss_pred hhhcCCeEEEEEeeeeecCCCCC-----CC-------------------CCCC-----ChHHHHHHHHHHHHHcCCCCCC
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAHH-----IT-------------------QPHI-----DGKGAILAMTRALKQSGLQSHQ 132 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~~-----~~-------------------~~~~-----~~~~~~~a~~~al~~Agi~~~d 132 (251)
... +.. |.++...+++.. .. .... ......++++++|+++|++++|
T Consensus 168 ~~~-~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~g~~~~d 242 (320)
T cd00830 168 TEE-DPG----ILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLTPDD 242 (320)
T ss_pred cCC-CCc----EEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHHHHHHHHcCCCHHH
Confidence 110 111 122222221110 00 0000 0123457889999999999999
Q ss_pred ccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 133 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 133 Id~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
||+|..|..+....+. +.+.++-... .+ ...-..+||+.+|+=.+.|..++ +.+.
T Consensus 243 i~~~~~h~~~~~~~~~-----~~~~lgl~~~--~~--~~~~~~~Gn~~sas~~~~L~~~~---~~~~------------- 297 (320)
T cd00830 243 IDWFVPHQANLRIIEA-----VAKRLGLPEE--KV--VVNLDRYGNTSAASIPLALDEAI---EEGK------------- 297 (320)
T ss_pred CCEEEECCCCHHHHHH-----HHHHhCCCHH--Hh--hhhHHhhCcHHHHHHHHHHHHHH---HcCC-------------
Confidence 9999999776554332 2333332111 12 12334799999999777766553 2222
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeE
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLL 246 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~v 246 (251)
..+...+++.++|.|-+..+++
T Consensus 298 ------------~~~G~~vll~~~G~G~~~~~~l 319 (320)
T cd00830 298 ------------LKKGDLVLLLGFGAGLTWGAAL 319 (320)
T ss_pred ------------CCCCCEEEEEEEchHHhhHHhh
Confidence 1234567777888876655544
|
It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. |
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-09 Score=89.47 Aligned_cols=205 Identities=20% Similarity=0.157 Sum_probs=112.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCC---CcccccccCCCccc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ---EASRPFDCGRDGFE 78 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~f~~~~~g~~ 78 (251)
+.+.|..+|+|++.||..|..+|++|.++.+||+++|....... ..+. ..........+. .....|.+.+....
T Consensus 115 ~~~~v~~~C~~~~~al~~A~~~i~~g~~~~~Lvv~~e~~s~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~GDGA~A~l 191 (338)
T PRK09258 115 ANFDVSNACLGFLNGMLDAANMIELGQIDYALVVSGESAREIVE-ATID--RLLAPETTREDFAQSFATLTLGSGAAAAV 191 (338)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEecccchhcc-chhh--hhccCccchhhhhhccceEEecccceEEE
Confidence 46789999999999999999999999999999999998543221 1110 000000000000 00112333333333
Q ss_pred hhhhhhcCCeEEEEEeeeeecCCCCC--CCCC-----CCCh--------HHHHHHHHHHHHHcCCCCCCccEEEecCCCC
Q 040515 79 LEHAKKRGAKIYAEVRGYGMSGDAHH--ITQP-----HIDG--------KGAILAMTRALKQSGLQSHQVDYVNAHATST 143 (251)
Q Consensus 79 ~~~A~~~g~~~~a~i~g~~~~~~~~~--~~~~-----~~~~--------~~~~~a~~~al~~Agi~~~dId~i~~h~~gt 143 (251)
++....... ...+.+....+++.. .... ..+. .....+++++|+++|++++|||++..|-.+.
T Consensus 192 l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~did~~i~H~~~~ 269 (338)
T PRK09258 192 LTRGSLHPR--GHRLLGGVTRAATEHHELCQGGRDGMRTDAVGLLKEGVELAVDTWEAFLAQLGWAVEQVDRVICHQVGA 269 (338)
T ss_pred EecCCCCCC--cceeeeeeeecCCCcccccccCccceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEecCCCCH
Confidence 322111000 012333222222211 0000 0111 2334578899999999999999999997665
Q ss_pred cCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccC
Q 040515 144 PLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 223 (251)
Q Consensus 144 ~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
+..+ .+.+.++-.. ..++. +. ..+||+.+|+=.+.|..++ +.+.
T Consensus 270 ~~~~-----~~~~~lgl~~--~k~~~-~~-~~~GN~~sas~~~~L~~~~---~~g~------------------------ 313 (338)
T PRK09258 270 AHTR-----AILKALGIDP--EKVFT-TF-PTLGNMGPASLPITLAMAA---EEGF------------------------ 313 (338)
T ss_pred HHHH-----HHHHHhCCCH--HHcee-hH-hhhCCcHHhHHHHHHHHHH---HhCC------------------------
Confidence 5433 3333332211 11222 33 3699999998666665543 2222
Q ss_pred CCCCCcEEEEecccccceeeeeEee
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++.++|.|-+...++++
T Consensus 314 -~~~Gd~vll~~~G~G~s~~~~~~~ 337 (338)
T PRK09258 314 -LKPGDRVALLGIGSGLNCSMLEVK 337 (338)
T ss_pred -CCCCCEEEEEEechhHhhHhHeee
Confidence 123467888899988777666654
|
|
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.3e-08 Score=86.05 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=51.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhh-hhhcccccCCCCCCcccccccCCCcc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCK-SRALTTKYNGTPQEASRPFDCGRDGF 77 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~f~~~~~g~ 77 (251)
|++.|+.+|+|++.||..|.++|++|.++.+||+++|.++.......+.. .+.+... +...+.+|+....++
T Consensus 116 ~~~~v~~~Cas~~~al~~A~~~i~sg~~~~vLvv~~E~~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 188 (378)
T PRK06816 116 EVVSSAGVCAAGMMALKYAYLSVKAGESRNAVATASELASRWFRASRFEAEEEKLAEL----EENPEIAFEKDFLRW 188 (378)
T ss_pred ceeeecCcCHHHHHHHHHHHHHHHCCCCCEEEEEeEccchhhhhhhhhhhHHHHhhcC----cccCCCCCCCCCCCE
Confidence 56889999999999999999999999999999999999766554332221 2222211 223456666666555
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=87.12 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=106.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|++.|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+... ....-|.+.+.++.++.
T Consensus 103 ~~~~v~~~Casg~~al~~A~~~i~sg~~~~~Lvv~~e~~s~~~~~~~~---------------~~~~~fgDga~A~ll~~ 167 (326)
T CHL00203 103 VAFDITAACSGFILALVTATQFIQNGSYKNILVVGADTLSKWIDWSDR---------------KTCILFGDGAGAAIIGA 167 (326)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCEEEEEEehhhhCcCCcccC---------------CceEEEcceeeEEEEEE
Confidence 568899999999999999999999999999999999985433211100 00112333333332211
Q ss_pred hhhcCCeEEEEEeeeeecCCCC-----------------C-CCCCC-------CC--------hHHHHHHHHHHHHHcCC
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAH-----------------H-ITQPH-------ID--------GKGAILAMTRALKQSGL 128 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~-----------------~-~~~~~-------~~--------~~~~~~a~~~al~~Agi 128 (251)
... ..+ .++...+++. . ...+. .. ......+++++|+++|+
T Consensus 168 ~~~--~~~----~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~g~ 241 (326)
T CHL00203 168 SYE--NSI----LGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQVPAVIIKCLNALNI 241 (326)
T ss_pred cCC--CCe----EEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 000 000 0100000000 0 00000 00 01244578999999999
Q ss_pred CCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCC
Q 040515 129 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAK 208 (251)
Q Consensus 129 ~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~ 208 (251)
+++|||++..|-.+.... .++.+.++-... .++ ..-..+||+.+|+=.+.|.++ ++.+.+
T Consensus 242 ~~~did~~~~hq~~~~~~-----~~~~~~lgl~~~--k~~--~~l~~~Gn~~sasi~~~L~~~---~~~g~~-------- 301 (326)
T CHL00203 242 SIDEVDWFILHQANKRIL-----EAIANRLSVPNS--KMI--TNLEKYGNTSAASIPLALDEA---IQNNKI-------- 301 (326)
T ss_pred CHHHCCEEEECCCCHHHH-----HHHHHHhCCCHH--Hhh--hHHHhhCcHHHHHHHHHHHHH---HHhCCC--------
Confidence 999999999996664432 223333331111 122 123578999998866665544 333321
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 209 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+.+++.++|.|=+..++|++
T Consensus 302 -----------------~~Gd~vll~~~G~G~s~~~~v~~ 324 (326)
T CHL00203 302 -----------------QPGQIIVLSGFGAGLTWGAIVLK 324 (326)
T ss_pred -----------------CCCCEEEEEEEchhhhheEEEEE
Confidence 23467777788888777777765
|
|
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=88.48 Aligned_cols=191 Identities=17% Similarity=0.176 Sum_probs=108.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|++.|+.+|+|++.||..|.++|++|.++.+||+++|.+.....+... ....-|.+.+..+.++.
T Consensus 148 ~~~dv~~~Ca~~~~aL~~A~~~l~~g~~~~vLVv~~e~~s~~~~~~d~---------------~~~~lfGDGAaAvlL~~ 212 (379)
T PLN02326 148 LAFDLTAACSGFVLGLVTAARFIRGGGYKNVLVIGADALSRYVDWTDR---------------GTCILFGDGAGAVVLQA 212 (379)
T ss_pred ceeeccccchHHHHHHHHHHHHHHcCCCCEEEEEEechhcCCCCcccc---------------CceEEEcceeEEEEEEE
Confidence 568899999999999999999999999999999999985432211100 01112333333322211
Q ss_pred hhhcCCeEEEEEeeeeecCCC------------C-----------CCCC---------CCCC--------hHHHHHHHHH
Q 040515 82 AKKRGAKIYAEVRGYGMSGDA------------H-----------HITQ---------PHID--------GKGAILAMTR 121 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~------------~-----------~~~~---------~~~~--------~~~~~~a~~~ 121 (251)
.......+ .++...+++ . .... .... ...+.+++++
T Consensus 213 ~~~~~~~i----~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~ 288 (379)
T PLN02326 213 CDDDEDGL----LGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKEVFKFAVRCVPQVIES 288 (379)
T ss_pred cCCCCCce----EEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHHHHHHHHHHHHHHHHH
Confidence 00000000 000000000 0 0000 0000 1123467889
Q ss_pred HHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCcc
Q 040515 122 ALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAP 201 (251)
Q Consensus 122 al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip 201 (251)
+|+++|++++|||+|..|-.+....| .+.+.++-.. ..++ .+. ..+||+.+|+=.+.|.+++ +.+.
T Consensus 289 ~L~~~gl~~~dId~~v~Hq~n~~~~~-----~~~~~Lgl~~--ek~~-~~l-~~~GNt~sAsi~~~L~~~~---~~g~-- 354 (379)
T PLN02326 289 ALQKAGLTAESIDWLLLHQANQRIID-----AVAQRLGIPP--EKVI-SNL-ANYGNTSAASIPLALDEAV---RSGK-- 354 (379)
T ss_pred HHHHcCCCHHHCCEEEECCCCHHHHH-----HHHHHcCCCH--HHee-ecH-hhcCcHHHHHHHHHHHHHH---HcCC--
Confidence 99999999999999999965544322 2333332111 1132 233 5799999998666655442 2222
Q ss_pred CcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 202 LTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+.+.+++.+||.|-+..++||+
T Consensus 355 -----------------------~~~Gd~vll~~~G~G~t~~~~ll~ 378 (379)
T PLN02326 355 -----------------------VKKGDVIATAGFGAGLTWGSAIVR 378 (379)
T ss_pred -----------------------CCCCCEEEEEEEChhheeeEEEEE
Confidence 123467888899998888888875
|
|
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-08 Score=84.22 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=105.7
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHh-CCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcc-cccccCCCccch
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQF-GDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEAS-RPFDCGRDGFEL 79 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~-G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~f~~~~~g~~~ 79 (251)
+++.|..+|++++.||..|.++|++ |.++.+||++.|.......+.. +.... ..|.+.+....+
T Consensus 107 ~~~~v~~~C~~~~~al~~A~~~l~~~g~~~~~Lvv~~~~~s~~~~~~~--------------~~~~~~~~~GDgAaA~ll 172 (339)
T PRK06840 107 WAFDIMAVCASFPIALKVAKDLLYSDPSIENVLLVGGYRNSDLVDYDN--------------PRTRFMFNFAAGGSAALL 172 (339)
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCccEEEEEeecccccccCcCC--------------CCeeeeccCCCceeEEEE
Confidence 4677899999999999999999999 9999999999887433211100 00000 012333333222
Q ss_pred hhhhhcCCeEEEEEeeeeecCCC------------CC-C----C---------CCCCC----------hHHHHHHHHHHH
Q 040515 80 EHAKKRGAKIYAEVRGYGMSGDA------------HH-I----T---------QPHID----------GKGAILAMTRAL 123 (251)
Q Consensus 80 ~~A~~~g~~~~a~i~g~~~~~~~------------~~-~----~---------~~~~~----------~~~~~~a~~~al 123 (251)
+.. ..+.. |.+....+++ .. . . ...+. .....++++++|
T Consensus 173 ~~~-~~~~~----il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L 247 (339)
T PRK06840 173 KKD-AGKNR----ILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDEVSIPNFLKVIREAL 247 (339)
T ss_pred Eec-CCCCc----eEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHhhHHHHHHHHHHHHH
Confidence 110 00011 1111111111 00 0 0 00000 113457889999
Q ss_pred HHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCc
Q 040515 124 KQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLT 203 (251)
Q Consensus 124 ~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~ 203 (251)
+++|++++|||++..|-.+... ...+.+.++-... +.. ....+||+.+|+=++.|..++ +.+.
T Consensus 248 ~~~gl~~~did~~~~h~~~~~~-----~~~~~~~Lgl~~~--~~~---~~~~~Gn~~sas~~~~L~~~~---~~~~---- 310 (339)
T PRK06840 248 RKSGYTPKDIDYLAILHMKRSA-----HIALLEGLGLTEE--QAI---YLDEYGHLGQLDQILSLHLAL---EQGK---- 310 (339)
T ss_pred HHcCCCHHHCCEEEECCcCHHH-----HHHHHHHcCCCHH--HeE---eHHhccchhhhhHHHHHHHHH---HcCC----
Confidence 9999999999999887443222 1223333321111 122 235789999988666655442 2221
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 204 LNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++.++|.|.+..+++|+
T Consensus 311 ---------------------~~~Gd~ill~~~G~G~s~~~~~l~ 334 (339)
T PRK06840 311 ---------------------LKDGDLVVLVSAGTGYTWAATVIR 334 (339)
T ss_pred ---------------------CCCCCEEEEEEEehhhheeEEEEE
Confidence 123467888899999998888886
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-07 Score=77.91 Aligned_cols=187 Identities=14% Similarity=0.115 Sum_probs=104.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
+.+.|..+|+++..||..|..+|++|.++.+||++.|.+..... +.....|...+....++.
T Consensus 104 ~~~dv~~aC~g~~~al~~A~~~i~sg~~~~vLVv~~d~~~~~~~------------------~~~~~~~GDGAaA~vl~~ 165 (345)
T TIGR00748 104 TAADLEFACKAGTAGIQACMGLVASGMIKYGLAIGADTAQGAPG------------------DALEYTAGAGGAAYIIGE 165 (345)
T ss_pred eEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecccCCC------------------ccCcccCCCceEEEEEcc
Confidence 46788999999999999999999999999999999998531100 000001111111111111
Q ss_pred hhhcCCeEEEEEeeee-ecCCCCC------------CCCCCC---ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC
Q 040515 82 AKKRGAKIYAEVRGYG-MSGDAHH------------ITQPHI---DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 145 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~-~~~~~~~------------~~~~~~---~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~ 145 (251)
. . ....+.+.. ...|+.. ...... -......+++++|+++|++++|||++..|-.+...
T Consensus 166 ~----~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~did~~i~Hq~~~~~ 240 (345)
T TIGR00748 166 K----N-TVAYFEGTYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLGLTPEDFDYAVFHQPNGKF 240 (345)
T ss_pred C----C-cceEeecccceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcCCCHHHcCEEEeCCCChHH
Confidence 0 0 001111110 0011000 000000 11233477889999999999999999999544332
Q ss_pred CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 146 GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 146 ~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
...+.+.++-.. ...+.+-.-..+||+.+||=.+.|..++..+
T Consensus 241 -----~~~~~~~lgl~~--ek~~~~~~~~~~GNt~sAsipl~L~~~~~~~------------------------------ 283 (345)
T TIGR00748 241 -----YLVAARMLGFPK--EQVKPGLLTPRIGNTYSGATPVGLSAVLDIA------------------------------ 283 (345)
T ss_pred -----HHHHHHHcCCCH--HHeeccccccccCchhhhHHHHHHHHHHHhc------------------------------
Confidence 112223332111 1122211125799999999777776654211
Q ss_pred CCCcEEEEecccccceeeeeEee
Q 040515 226 MPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+.+++.+||.|-+...++++
T Consensus 284 ~~Gd~vll~~~G~G~s~~~~~~~ 306 (345)
T TIGR00748 284 EPGDRILAVSYGSGAGSDAFSIV 306 (345)
T ss_pred CCCCEEEEEEecCCcceeEEEEE
Confidence 12346777889988888888774
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.9e-08 Score=83.82 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=39.3
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 44 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~ 44 (251)
|+++|+.+|+|++.||..|.++|++|.++.+||+++|.+....
T Consensus 101 ~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlvv~~e~~~~~~ 143 (324)
T cd00827 101 EAFDLKQACYGGTAALQLAANLVESGPWRYALVVASDIASYLL 143 (324)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHcCCCCEEEEEEEHHhhhcc
Confidence 6788999999999999999999999999999999999865444
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.5e-07 Score=77.59 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=104.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
+.+.++.+|++++.+|..|..+|++|.++.+||++.|.....+. .. ....|.+.+....++.
T Consensus 105 ~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~aLVv~~e~~~~~~~-------~~-----------~~~~~GDGA~A~ll~~ 166 (347)
T PRK04262 105 TAADLEFACKAGTAALQAAMGLVKSGMIKYALAIGADTAQGAPG-------DA-----------LEYTAAAGGAAFIIGK 166 (347)
T ss_pred eEEEHHHhHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeeccCCC-------CC-----------CCCcCCCCcEEEEEec
Confidence 35778999999999999999999999999999999997311000 00 0001111111111111
Q ss_pred hhhcCCeEEEEEeeee-ecCCCCCC--------C----CCC---CChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC
Q 040515 82 AKKRGAKIYAEVRGYG-MSGDAHHI--------T----QPH---IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 145 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~-~~~~~~~~--------~----~~~---~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~ 145 (251)
.. ....|.+.. ...+.... . ... ........+++++|+++|++++|||++..|-.+...
T Consensus 167 --~~---~~~~i~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~dId~~v~Hq~n~~~ 241 (347)
T PRK04262 167 --EE---VIAEIEATYSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGLKPSDYDYAVFHQPNGKF 241 (347)
T ss_pred --Cc---ccceeeccccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhCcCHHHhceeecCCCchHH
Confidence 00 001122111 00111000 0 000 011356678899999999999999999999544443
Q ss_pred CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 146 GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 146 ~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
.+. +.+.++-.. ..++.+..-..+||+.+|+=.+.+..++. . .
T Consensus 242 ~~~-----~~~~Lgl~~--ek~~~~~~~~~~GNt~sAsi~~~L~~~~~---~-~-------------------------- 284 (347)
T PRK04262 242 PLR-----VAKMLGFTK--EQVKPGLLTPYIGNTYSGSALLGLAAVLD---V-A-------------------------- 284 (347)
T ss_pred HHH-----HHHHcCCCH--HHhhccchhhhhCChHHHHHHHHHHHHHH---h-C--------------------------
Confidence 222 222222111 11222212367999999997766655431 1 0
Q ss_pred CCCcEEEEecccccceeeeeEee
Q 040515 226 MPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+...+++.+||.|-+...++++
T Consensus 285 ~~Gd~vll~~~G~G~~~~~~~~~ 307 (347)
T PRK04262 285 KPGDRILVVSFGSGAGSDAFSIT 307 (347)
T ss_pred CCCCEEEEEecCCCcceeeEEEE
Confidence 12356788888888777666664
|
|
| >PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=74.55 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=34.5
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+++.|..+|++++.||..|..+|+++. +.+||+++|...
T Consensus 105 ~~~di~~~C~g~~~aL~~A~~~l~~~~-~~aLVv~~d~~s 143 (326)
T PRK05963 105 GAIDLAGACAGFLYALVLADGFVRAQG-KPVLVVAANILS 143 (326)
T ss_pred ceeeccchhhHHHHHHHHHHHHHHcCC-CeEEEEEechhh
Confidence 467888999999999999999999985 899999999743
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-07 Score=78.05 Aligned_cols=43 Identities=37% Similarity=0.540 Sum_probs=38.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 44 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~ 44 (251)
|.++|+..|+||+.||.+|+++|++|++|++||+|+|++++.+
T Consensus 80 p~~~V~~~CaSG~~Av~~a~~~I~sG~~dvvlagGvE~mS~~p 122 (264)
T PF00108_consen 80 PATTVNRACASGLQAVHLAAMAIASGEADVVLAGGVESMSRVP 122 (264)
T ss_dssp EEEEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEETTTSC
T ss_pred ceeeehhhhhHHHHHHHHhhhhhcCCCccEEEEeccccccccc
Confidence 7899999999999999999999999999999999999987654
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=68.99 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=35.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCC
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 39 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~ 39 (251)
+++.+..+|++++.||..|..+|++|..+.+||+++|.
T Consensus 101 ~~~dv~~aC~gg~~aL~~A~~~i~s~~~~~aLVv~~D~ 138 (379)
T TIGR01835 101 RSFELKQACYGATAALQMAKGHVALSPDRKVLVIASDI 138 (379)
T ss_pred eEEEeccccHHHHHHHHHHHHHHHcCCCCeEEEEEeeh
Confidence 46778999999999999999999999999999999997
|
This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. |
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.3e-06 Score=73.14 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=36.2
Q ss_pred eeecc-hhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcC
Q 040515 3 NHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 42 (251)
Q Consensus 3 ~~tv~-~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~ 42 (251)
++.|. .+|++++.||..|..+|++|..+.+||+++|..+.
T Consensus 139 ~~dv~~~~C~~~~~al~~A~~~~~~~~~~~aLvv~~e~~s~ 179 (361)
T cd00831 139 RYNLGGMGCSAGAIALDLAKDLLEANPGARVLVVSTELCSL 179 (361)
T ss_pred hhccccccchhHHHHHHHHHHHHHHCCCCEEEEEEeecccc
Confidence 56787 89999999999999999999999999999998544
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=67.11 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=88.0
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|.+.|+++|+|++.||..|..+|++|.+|.+||++.|...+......+ .......+| ..+.-|..++..+.++.
T Consensus 97 P~fdV~~ACSTf~~AL~lAa~lI~SG~ad~VLVV~Ssh~S~AErqfr~-----p~eyg~q~~-~ta~~tgdGAGA~vl~~ 170 (327)
T TIGR02845 97 PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYATAERQFRY-----PTEYGVQKP-PTAQWTVTGAGAVLLAS 170 (327)
T ss_pred CEEEEeccCHHHHHHHHHHHHHHhCCCCCEEEEEEecccchhhhhccc-----ccccccCCC-CeeeEEEcccEEEEEee
Confidence 678999999999999999999999999999999999875544322111 100000011 23334555655554433
Q ss_pred hhhcCCeE----EEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 82 AKKRGAKI----YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 82 A~~~g~~~----~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
. ..+.++ .+.|..+++. |...+. ..+.++....+.+=|++-|.+|+|-|.|..-+.|.. -...+..+
T Consensus 171 ~-~~~~~i~~~t~gkv~d~g~~-d~~nmg--aamapaa~dti~~h~~d~~~~~~~yd~i~tgdlg~v-----g~~i~~~l 241 (327)
T TIGR02845 171 T-GGGPRITSATIGKVVDYGIT-DPLDMG--AAMAPAAADTIEAHFKDTGRSVDDYDLIVTGDLARV-----GSEILRKL 241 (327)
T ss_pred c-CCCCceEEEEEEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHcCCChhhccEEEecchHHH-----HHHHHHHH
Confidence 2 122222 1444444442 221111 112345667788889999999999999999876643 33445555
Q ss_pred hh
Q 040515 158 FS 159 (251)
Q Consensus 158 ~~ 159 (251)
+.
T Consensus 242 l~ 243 (327)
T TIGR02845 242 LK 243 (327)
T ss_pred HH
Confidence 53
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.3e-05 Score=66.70 Aligned_cols=39 Identities=18% Similarity=0.024 Sum_probs=34.7
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+++.|..+|++++.+|..|..+|++|..+ +||++.|..+
T Consensus 114 ~~~di~~~C~g~~~aL~~A~~~i~~~~~~-~LVv~~e~~S 152 (353)
T PRK12880 114 IAFDLGQACAGYLYGLFVAHSLIQSGLGK-ILLICGDTLS 152 (353)
T ss_pred eEEehhhhhHHHHHHHHHHHHHHHcCCCC-EEEEEehhhh
Confidence 35788999999999999999999999999 8888888743
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=63.72 Aligned_cols=208 Identities=12% Similarity=0.082 Sum_probs=107.7
Q ss_pred eecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhhhh
Q 040515 4 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEHAK 83 (251)
Q Consensus 4 ~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~A~ 83 (251)
+.+..+|++++.+|..|..+++++....+||+++|.++.............+ ....-|.+++....++...
T Consensus 158 ~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S~~~~~~~d~~~~~~---------v~~~LFGDGAaAvVl~~~~ 228 (393)
T PLN03172 158 MMYQQGCFAGGTVLRLAKDLAENNAGSRVLVVCSEITAVTFRGPSDTHLDSL---------VGQALFGDGAAAVIIGADP 228 (393)
T ss_pred eeeCCchHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhhhcccccccHHhh---------hccchhcCceEEEEEecCC
Confidence 4568999999999999999999999999999999985421100000000000 0122344443333222100
Q ss_pred hcC-CeEEEEEeeee----ecCC----------CCC--CC--CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc
Q 040515 84 KRG-AKIYAEVRGYG----MSGD----------AHH--IT--QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTP 144 (251)
Q Consensus 84 ~~g-~~~~a~i~g~~----~~~~----------~~~--~~--~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~ 144 (251)
..+ .++.-.|.+.. ..++ |.. +. .|......+...+++.|++.|+++.||++|-+|--|-.
T Consensus 229 ~~~~~~~~~~i~~~~~~~~~~t~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~~~~~L~~~gl~~~di~~~~~Hqgg~~ 308 (393)
T PLN03172 229 DTKIERPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFAPIGINDWNSIFWIAHPGGPA 308 (393)
T ss_pred CCcccCceeEEeeeccEEecCCcccccceEEcCCcEEEEechHHHHHHHHHHHHHHHHhhhcCCCccccceEEecCCcHH
Confidence 000 01111222221 1111 110 00 01111245567788899999999999999999955544
Q ss_pred CCcHHHHHHHHHHhhccCCCCceee-ecccCCccchhhhhhHHHHHHHHHH-HhhCCccCcCCCCCCCCCCCCCCCcccc
Q 040515 145 LGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEAIFAVLT-IHHGVAPLTLNLAKPDPIFNDNFMPLTA 222 (251)
Q Consensus 145 ~~D~~E~~a~~~~~~~~~~~~~~~v-~~~k~~~Gh~~~AsG~~~l~~~~~~-l~~~~ip~~~~~~~~~~~~~~~~~~~~~ 222 (251)
. ..++.+.++-...+ +.. ..+-..+|++.+||=++-|-+.... ++.+.
T Consensus 309 I-----l~~v~~~Lgl~~~~--~~~s~~vl~~yGNtSSaSv~~vL~~~~~~~~~~g~----------------------- 358 (393)
T PLN03172 309 I-----LDQVEIKLDLKEEK--LRATRHVLSDYGNMSSACVLFILDEMRKKSIEEGK----------------------- 358 (393)
T ss_pred H-----HHHHHHHcCCCHHH--HHHHHHHHHHhCccHHhHHHHHHHHHHhhhhhcCC-----------------------
Confidence 3 33344433321111 110 0122357888877733333322110 11111
Q ss_pred CCC-CCCcEEEEecccccceeeeeEeeec
Q 040515 223 SKD-MPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 223 ~~~-~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+. .+..+++..+||.|=+...++|+..
T Consensus 359 ~~~G~~~~~~ll~afGpG~t~~~~ll~~~ 387 (393)
T PLN03172 359 GSTGEGLEWGVLFGFGPGLTVETVVLHSV 387 (393)
T ss_pred CCCCCCcceEEEEEeCCcceeeeeeeEec
Confidence 001 1225788889999988888988863
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.1e-05 Score=62.56 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=83.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|.+.|+++|+|+..||..|..+|++|.+|.+||++.+.+.+....+.|- .+.....|. ...-+...+..+.++.
T Consensus 103 Pa~dV~gACST~~~AL~lAa~lI~SG~ad~VLVV~Ssh~s~aerqfr~P-----~eyg~qrp~-taqwtvtGAGA~i~~~ 176 (337)
T PRK08304 103 PFLGLYGACSTMMESLALGSMLIDGGFADRVLAATSSHFATAERQFRFP-----TEYGGQRPP-TAQWTVTGAGAVLLSR 176 (337)
T ss_pred cEEEEeccCHHHHHHHHHHHHHHhcCCCCEEEEEEcchhhhhhhhccCc-----hhccccCCC-cceEEeeccEEEEEec
Confidence 7889999999999999999999999999999999999865553222110 000001111 1111222333332221
Q ss_pred hhhcCCeE----EEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 82 AKKRGAKI----YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 82 A~~~g~~~----~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
. ..+.++ .+.|..+++. |...+. ..+.++....+.+=|++-|.+|+|-|.|..-+.|.. -...+.++
T Consensus 177 ~-~~~~~i~~~t~Gkv~D~g~~-d~~nmg--aaMapAa~dti~~h~~d~~~~~~~yDli~tGDlg~v-----G~~i~~~l 247 (337)
T PRK08304 177 E-GSGPRITHATIGKVVDLGIK-DPNDMG--AAMAPAAADTIQQHFKDTGRSPEDYDLIVTGDLGRV-----GREILKEL 247 (337)
T ss_pred C-CCCceEEEEeEEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHcCCChhhccEEEEcchHHH-----HHHHHHHH
Confidence 1 111111 1334444432 211111 122445667788889999999999999999876643 33445555
Q ss_pred hh
Q 040515 158 FS 159 (251)
Q Consensus 158 ~~ 159 (251)
+.
T Consensus 248 l~ 249 (337)
T PRK08304 248 LK 249 (337)
T ss_pred HH
Confidence 53
|
|
| >PLN03169 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=67.86 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=35.2
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCC
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 40 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~ 40 (251)
.+.+..+|++++.+|..|..+|++|..+.+||+++|..
T Consensus 161 ~~d~~~gC~g~~~aL~~A~~~~~~~~~~~vLvv~~e~~ 198 (391)
T PLN03169 161 VMLYFLGCSGGVAGLRVAKDIAENNPGSRVLLTTSETT 198 (391)
T ss_pred eecccChhHHHHHHHHHHHHHHHhCCCCeEEEEEEEcC
Confidence 46778999999999999999999999999999999984
|
|
| >COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00038 Score=59.49 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=94.8
Q ss_pred ecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhhhhh
Q 040515 5 AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEHAKK 84 (251)
Q Consensus 5 tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~A~~ 84 (251)
-+..+|-+|..||+.|..+|.+|..+-+||+|.|........ . .-+..++.+... ...
T Consensus 108 d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~~~~-------~-------------~E~t~GAGavA~--lIg 165 (377)
T COG3425 108 DVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYAPGD-------A-------------LEYTAGAGAVAF--LIG 165 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCccceEEEeehhhccCCCc-------c-------------cCccCCCceEEE--EEc
Confidence 366799999999999999999999999999999973222110 0 001112222100 011
Q ss_pred cCCeEEEEEeeeeecC-CCCCCCC----CCC--C--------hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHH
Q 040515 85 RGAKIYAEVRGYGMSG-DAHHITQ----PHI--D--------GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 149 (251)
Q Consensus 85 ~g~~~~a~i~g~~~~~-~~~~~~~----~~~--~--------~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~ 149 (251)
.+..+.+.+.+..... |-..... +.| . ...+..+.+..+++.|++|+|.||+..|-+...+
T Consensus 166 ~n~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~~k~---- 241 (377)
T COG3425 166 KNPPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPNGKF---- 241 (377)
T ss_pred cCCCeEEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCCChhhhCeEEecCCCCch----
Confidence 1123334443433222 1111000 111 1 2356678888899999999999999999877765
Q ss_pred HHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 150 EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 150 E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
-..++..+.-... + -.|=-.....+|.+..+|..++|+.++
T Consensus 242 ~~ka~k~l~~~~e-~-v~~~l~~~~~vGN~YtgS~~L~Las~L 282 (377)
T COG3425 242 PKKAAKSLGFKEE-Q-VKPGLVYPQRIGNTYTGSLLLGLASLL 282 (377)
T ss_pred HHHHHHHhCccHh-h-cCccchhhhhcCcccchhHHHHHHHHH
Confidence 5555555532211 0 011112223689999999999888876
|
|
| >PLN03171 chalcone synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=64.05 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=34.3
Q ss_pred eecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 4 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 4 ~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+.+..+|++++.+|..|..+|++|..+.+||+++|..+
T Consensus 164 ~~~~~gC~g~~~aL~~A~~li~~~~~~~vLVv~~e~~s 201 (399)
T PLN03171 164 MLHLNGCFAGAAALRLAKDLAENNRGARVLVVAAEITL 201 (399)
T ss_pred eccCCccHHHHHHHHHHHHHHHhCCCCeEEEEEEeccc
Confidence 45567999999999999999999999999999999844
|
|
| >PLN03170 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=63.94 Aligned_cols=210 Identities=10% Similarity=0.049 Sum_probs=106.7
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhhh
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEHA 82 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~A 82 (251)
.+.+..+|++++.+|..|.++++++....+||+++|..+..+..........+ ....-|.+++....++..
T Consensus 161 ~~d~~~gC~G~~~aL~~A~~l~~~~~~~~vLVV~~E~~S~~~~~~~~~~~~~~---------~~~~LFGDGAaAvVl~~~ 231 (401)
T PLN03170 161 LMMYQQGCFAGGTVLRVAKDLAENNRGARVLVVCSEITAVTFRGPSESHLDSM---------VGQALFGDGAAAVIVGAD 231 (401)
T ss_pred HHhhcChhHHHHHHHHHHHHHHHcCCCCeEEEEEEehhhhccCCcccchhhhh---------hhhhhhhceeEEEEEecC
Confidence 46788999999999999999999999999999999985422100000000000 011123222222211100
Q ss_pred hhcC-CeEEEEEee--------------eeecCCCCCCC----CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCC
Q 040515 83 KKRG-AKIYAEVRG--------------YGMSGDAHHIT----QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATST 143 (251)
Q Consensus 83 ~~~g-~~~~a~i~g--------------~~~~~~~~~~~----~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt 143 (251)
...+ ..+...+.+ +.+...|.... .|......+...++++|+++|++++||+++.+|--|.
T Consensus 232 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L~~~gl~~~di~~~v~Hqgg~ 311 (401)
T PLN03170 232 PDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGP 311 (401)
T ss_pred CcccccCCceEEeeccceEecCCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHHHhcCCCccccCeEEecCCcH
Confidence 0000 000001111 01111111000 0111224566788999999999999999999995443
Q ss_pred cCCcHHHHHHHHHHhhccCCCCcee-eecccCCccchhhhhhHHHHHHHHHH-HhhCCccCcCCCCCCCCCCCCCCCccc
Q 040515 144 PLGDTVEATAIRTVFSDHATSGSLA-FSSTKGAIGHLLGAAGAVEAIFAVLT-IHHGVAPLTLNLAKPDPIFNDNFMPLT 221 (251)
Q Consensus 144 ~~~D~~E~~a~~~~~~~~~~~~~~~-v~~~k~~~Gh~~~AsG~~~l~~~~~~-l~~~~ip~~~~~~~~~~~~~~~~~~~~ 221 (251)
.. ..++.+.++-... .+. -..+-..+||+.+++=++-|-+.... ++.+.+.
T Consensus 312 ~i-----l~~v~~~Lgl~~~--~~~~s~~~l~~~GNtsSasv~~vL~~~~~~~~~~g~~~-------------------- 364 (401)
T PLN03170 312 AI-----LDQVEAKVGLEKE--RMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQAT-------------------- 364 (401)
T ss_pred HH-----HHHHHHHcCCChH--HHHHHHHHHHHhCccHHhHHHHHHHHHHHhHhhcCCCC--------------------
Confidence 32 3333333321110 011 00122368899888755444443211 1122110
Q ss_pred cCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 222 ASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 222 ~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.......+++.+||.|=+...+||+++
T Consensus 365 --~G~~~~~~ll~afGpG~t~~~~ll~~~ 391 (401)
T PLN03170 365 --TGEGFDWGVLFGFGPGLTVETVVLHSV 391 (401)
T ss_pred --CCCCccEEEEEEeCchHhHHhHHheec
Confidence 001125678889998888888888763
|
|
| >PLN02854 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00038 Score=62.55 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=35.8
Q ss_pred eeecc-hhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 3 NHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 3 ~~tv~-~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
++.++ .+|++++.+|..|.++|+.+....+||+++|..+
T Consensus 242 afdLsgmGCSggl~aL~lA~~lL~~~~~~~aLVVstE~~S 281 (521)
T PLN02854 242 SYNLGGMGCSAGLISIDLANDLLKANPNSYAVVVSTENIT 281 (521)
T ss_pred EEecccchhhhHHHHHHHHHHHHHhCCCCeEEEEEEeeee
Confidence 56677 7999999999999999999999999999999854
|
|
| >PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=49.75 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=53.0
Q ss_pred HHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccC
Q 040515 123 LKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPL 202 (251)
Q Consensus 123 l~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~ 202 (251)
|+++|++++|||++..|-..... ...+.+.++-... ..+ ... ..+||+.+|+-.+.+..++ +.+.
T Consensus 1 L~~~g~~~~did~~i~hq~~~~~-----~~~~~~~lgi~~~--~~~-~~~-~~~Gn~~sa~~~~~L~~~~---~~g~--- 65 (90)
T PF08541_consen 1 LERAGLSPDDIDHFIPHQASKKI-----LDSIAKRLGIPPE--RFP-DNL-AEYGNTGSASIPINLADAL---EEGR--- 65 (90)
T ss_dssp HHHTT--GGGESEEEE-SSSHHH-----HHHHHHHHTS-GG--GBE--TH-HHH-B-GGGHHHHHHHHHH---HTTS---
T ss_pred CccccCCHHHCCEEEeCCCCHHH-----HHHHHHHcCCcHH--HHH-HHH-hccCcchhhhHHHHHHHHH---HcCC---
Confidence 68999999999999999555332 2223333332111 122 223 6789999999777765543 3322
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 203 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++.++|.|.+.++++++
T Consensus 66 ----------------------~~~Gd~vl~~~~G~G~~~~~~~~~ 89 (90)
T PF08541_consen 66 ----------------------IKPGDRVLLVGFGAGFSWGAAVLR 89 (90)
T ss_dssp ----------------------SCTTEEEEEEEEETTTEEEEEEEE
T ss_pred ----------------------CCCCCEEEEEEEEhhheeEEEEEE
Confidence 234567888899999999988876
|
3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B .... |
| >PLN03173 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00015 Score=63.41 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=34.9
Q ss_pred eecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 4 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 4 ~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+.+..+|++++.+|..|.++++++..+.+||+++|.++
T Consensus 158 ~~~~~gC~g~~~aL~~A~~~~~~~~~~~vLVV~~E~~S 195 (391)
T PLN03173 158 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITA 195 (391)
T ss_pred ehhcCccHHHHHHHHHHHHHHHhCCCCeEEEEEEehhh
Confidence 45789999999999999999999999999999999844
|
|
| >PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00014 Score=48.75 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=34.0
Q ss_pred eecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcC
Q 040515 4 HAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 42 (251)
Q Consensus 4 ~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~ 42 (251)
|.|+.+|++.+.||..|..+|++|.++.+||++.|....
T Consensus 1 fDi~~~C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~ 39 (80)
T PF08545_consen 1 FDINQACAGFLYALDVAAALIASGRAKNALVVGGDRLSR 39 (80)
T ss_dssp EEEE-GGGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG
T ss_pred CcccccchHHHHHHHHHHHHHhhccCCEEEEEeeccccc
Confidence 568899999999999999999999999999999998544
|
The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. |
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=53.94 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=81.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCccccccc----CCCc-
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDC----GRDG- 76 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~----~~~g- 76 (251)
|.+.|.++|+|+..||..|..+|++|.+|.+||+......+....+.| -.+. +..||... ...|
T Consensus 101 P~~gV~gACSTg~eAL~lAa~~VaSG~Ad~VLavtsSH~~~aErqfR~-----P~ey------G~Qrp~taqwTvTgaga 169 (334)
T PRK12404 101 PYLGLFGACSTSMEGLALAALIVNSGGAKYVLTGASSHNAAVEKQFRY-----PTEY------GGQKPPTAQWTVTGAGA 169 (334)
T ss_pred CccceeecCHHHHHHHHHHHHHHHcCCCCEEEEEeCcccchhhhhccC-----cccc------cCcCCCcccEEEEceEE
Confidence 678899999999999999999999999999999987664443322211 1111 12222211 1111
Q ss_pred cchhhhhhcCCeE----EEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHH
Q 040515 77 FELEHAKKRGAKI----YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEAT 152 (251)
Q Consensus 77 ~~~~~A~~~g~~~----~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~ 152 (251)
+.+... ..+.++ .+.|..+++. |...+. ..+.++....+.+=|++-|.+|+|-|.|..-+.|.. -..
T Consensus 170 ~~l~~~-~~~~~i~~~T~Gkv~D~g~~-d~~nMG--aaMAPAA~dti~~h~~d~~~~~~~yDlI~TGDLg~v-----G~~ 240 (334)
T PRK12404 170 AILSKT-GDGPRVTSATIGRVVDMGLT-DPFNMG--GAMAPAAVDTIEAHLRDRQIDASYYDLIVTGDLGHV-----GRE 240 (334)
T ss_pred EEEecC-CCCceEEEEEEEEEEecCCC-Ccccch--hhhhHHHHHHHHHHHHHhCCChhhccEEEEcchHHH-----HHH
Confidence 122110 111111 1334444432 211111 112345667788889999999999999999876643 344
Q ss_pred HHHHHhhc
Q 040515 153 AIRTVFSD 160 (251)
Q Consensus 153 a~~~~~~~ 160 (251)
.+..++.+
T Consensus 241 i~~~ll~~ 248 (334)
T PRK12404 241 IAKDLLHK 248 (334)
T ss_pred HHHHHHHH
Confidence 45555543
|
|
| >PLN02577 hydroxymethylglutaryl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=58.14 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=35.3
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCc--CEEEEeCcCCC
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTESS 40 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~--d~alvgg~e~~ 40 (251)
+++-+..+|.++..||..|..+|++|.. +.+||+++|..
T Consensus 109 ~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a 149 (459)
T PLN02577 109 EGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSA 149 (459)
T ss_pred EEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechh
Confidence 3677899999999999999999999985 99999999973
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=57.79 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=36.3
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
++.+..+|++++.+|..|..+|++|....|||+++|.++
T Consensus 156 ~~d~~~gC~g~~~aL~~A~~~i~~~~~~~VLVV~~E~~S 194 (389)
T PLN03168 156 VMMYQTGCFGGASVLRVAKDLAENNKGARVLAVASEVTA 194 (389)
T ss_pred eeeeCCccHHHHHHHHHHHHHHHhCCCCEEEEEEEehhh
Confidence 577899999999999999999999999999999999854
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=56.75 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=36.0
Q ss_pred eeecc-hhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 3 NHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 3 ~~tv~-~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
++.++ .+|++++.+|..|.++|+.+....+||+++|..+
T Consensus 226 afdL~gmGCsggl~aL~lA~~ll~~~~~~~aLVVstE~~S 265 (502)
T PLN02377 226 SFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENIT 265 (502)
T ss_pred EEecccchhhHHHHHHHHHHHHHHcCCCCEEEEEEEeccc
Confidence 57788 6999999999999999999999999999999854
|
|
| >COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=42.73 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---------
Q 040515 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--------- 77 (251)
Q Consensus 7 ~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--------- 77 (251)
.-||+.+..+|..|.+..+..--..++|+.+|.++-......-.+...+. ..-|.++.-..
T Consensus 135 glGCaaga~glara~~y~ra~P~~~vlvV~vELCSLt~~~~d~t~s~lVg----------taLF~DG~AA~vv~gd~~~~ 204 (356)
T COG3424 135 GLGCAAGAAGLARARDYCRAAPDANVLVVCVELCSLTYVFADDTKSNLVG----------TALFGDGAAAVVVSGDRRAE 204 (356)
T ss_pred cchhhhhhhHHHHHHHHHhhCccceEEEEEeeeeeeeeecCCCCccccee----------eeeecCCeeEEEEecccccc
Confidence 35899999999999999999999999999999754221111111111111 11122211111
Q ss_pred -----------chhhhhhcCCeEEEEEeeeeecCCCCCCCC----CCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCC
Q 040515 78 -----------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQ----PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 142 (251)
Q Consensus 78 -----------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~----~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~g 142 (251)
+.+.-..++ -.+.|+.+..+|.+... |..-...+...+...|...+++.+||+.|.+|=-|
T Consensus 205 ~~~~~~p~i~~s~StL~~ds----e~~Mgwdv~d~G~~~vlSrdlp~lIe~~l~~~V~~fL~~~~ls~~dI~~w~~HPGG 280 (356)
T COG3424 205 GKRPLRPDILDSFSTLYPDS----EDIMGWDVGDQGLKVVLSRDLPNLIESYLAPNVTTFLATHGLSIEDIEAWVVHPGG 280 (356)
T ss_pred ccCCCCceecccccccCCcc----ccccceeecCCcEEEEEcCchhHHHHHHhhhhHHHHHHHcCCchhhhceeeeCCCC
Confidence 000001111 12456666666654222 11112345667889999999999999999999766
Q ss_pred CcCCcHHH
Q 040515 143 TPLGDTVE 150 (251)
Q Consensus 143 t~~~D~~E 150 (251)
-..-|.+|
T Consensus 281 ~KVida~~ 288 (356)
T COG3424 281 PKVIDAYE 288 (356)
T ss_pred chHHHHHH
Confidence 66555554
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.045 Score=49.05 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=36.9
Q ss_pred eeecc-hhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcCh
Q 040515 3 NHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 43 (251)
Q Consensus 3 ~~tv~-~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~ 43 (251)
++.++ .+|++++.+|..|.++|+.+....+||+++|.++..
T Consensus 202 ~fdL~gmGCSggl~aL~lA~~ll~~~~~~~aLVVstE~~S~~ 243 (478)
T PLN02932 202 SLNLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQN 243 (478)
T ss_pred EEEeccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEeecccc
Confidence 56787 899999999999999999999999999999985443
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.051 Score=49.04 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=36.5
Q ss_pred Ceeecc-hhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 2 PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 2 p~~tv~-~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+++.++ .+|++++.+|..|.++|+.+....+||+++|.++
T Consensus 229 ~afdLsgmGCSggl~aLdlA~~lL~a~~~~~aLVVstE~~S 269 (511)
T PLN02192 229 LSYNLGGMGCSAGLISIDLAKHLLQVHPNSYALVISMENIT 269 (511)
T ss_pred eEEEcccchhhhHHHHHHHHHHHHHcCCCCeEEEEEEEecc
Confidence 367788 6999999999999999999999999999999854
|
|
| >TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.12 Score=46.13 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=34.2
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCc--CEEEEeCcCC
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTES 39 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~--d~alvgg~e~ 39 (251)
++.+..+|+++..||..|..+|++|.. +.+||++.|.
T Consensus 107 ~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDi 145 (454)
T TIGR01833 107 GIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDI 145 (454)
T ss_pred EEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecc
Confidence 567899999999999999999999974 9999999997
|
Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. |
| >PRK06065 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.99 Score=39.70 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=56.7
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHH-HHHHHHHHhhccCCCCceee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV-EATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~-E~~a~~~~~~~~~~~~~~~v 169 (251)
+.|.|++...-+.... ....+...++++++|+++||+++|||.+....+........ -...+...++.. +.|.
T Consensus 11 vaIvG~g~t~~~~~~~--~~~~~L~~~A~~~Al~dagl~~~dID~~i~~~~~~~~~~~~~~a~~l~~~lG~~----~~~~ 84 (392)
T PRK06065 11 VAVIGAGLTLFRRRLL--ETPQELAWEAASKALDEAGLELKDIDCVVIGSAPDAFDGVHMKGEYLSHGSGGI----RKPV 84 (392)
T ss_pred eEEEEecccCCcCCCC--CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCcccccccHHHHHHHHcCCC----CCCe
Confidence 5678887665443211 11244567899999999999999999987642211111000 111121212211 1222
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
..+ +..+++|...+..+...++.|..
T Consensus 85 ~~V-----~~~gasG~~al~~A~~~I~sG~a 110 (392)
T PRK06065 85 SRV-----YVGGATGVMTAIAGWYHVASGLC 110 (392)
T ss_pred EEE-----ecCchhHHHHHHHHHHHHhCCCC
Confidence 221 33478888889999999998753
|
|
| >PRK12578 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=1 Score=39.49 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=56.9
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCceee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~~v 169 (251)
+.|.|++...-+.... ....+...++++++|+++||+++|||.+... +....++ ......+...++-.. ..+
T Consensus 3 v~IvG~g~t~~~~~~~--~~~~eLa~~A~~~AL~dAgi~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~~---~~~- 75 (385)
T PRK12578 3 VAVIGVGNSKFGRRDD--VSVQELAWESIKEALNDAGVSQTDIELVVVG-STAYRGIELYPAPIVAEYSGLTG---KVP- 75 (385)
T ss_pred eEEEeecccceeecCC--CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-ecccccccCChHHHHHHHhCCCC---CCe-
Confidence 3567777554332211 1123456789999999999999999998764 3222111 112222333333211 111
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
..+ +..+++|+..+..+...++.|..
T Consensus 76 ~~v-----~~~casg~~al~~A~~~I~sG~~ 101 (385)
T PRK12578 76 LRV-----EAMCATGLAASLTAYTAVASGLV 101 (385)
T ss_pred eEE-----eccCHHHHHHHHHHHHHHHCCCC
Confidence 111 34678999999999999988864
|
|
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.29 Score=43.64 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=35.3
Q ss_pred eeecch-hhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 3 NHAAVT-ACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 3 ~~tv~~-~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
.+.|+. +|++++.+|..|.++++++....+||+++|..+
T Consensus 188 ~~dL~gmGCsggv~aL~lA~~ll~a~~~~~aLVVs~E~~S 227 (466)
T PLN00415 188 TYNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMT 227 (466)
T ss_pred EEEeccccchHHHHHHHHHHHHHHhCCCCEEEEEEEeccc
Confidence 466776 999999999999999999999999999999844
|
|
| >PRK08170 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.9 Score=38.40 Aligned_cols=101 Identities=15% Similarity=0.005 Sum_probs=56.7
Q ss_pred EEEeeeeecCCCCCCCCC--CCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH-HHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHITQP--HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT-VEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~--~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~-~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+...... ....+-...+++++|+++|++++|||.+... +.+...+. .....+....+-. .+.
T Consensus 5 v~Ivg~~rTp~g~~~g~~~~~~~~~L~~~A~~~Al~dAgl~~~dID~vi~g-~~~~~~~~~~~a~~v~~~lGl~---~~~ 80 (426)
T PRK08170 5 VYIVDGARTPFLKARGGPGPFSASDLAVAAGRALLNRQPFAPDDLDEVILG-CAMPSPDEANIARVVALRLGCG---EKV 80 (426)
T ss_pred EEEEecCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcChHHHHHHHHhCcC---CCc
Confidence 456666654433321111 1224556789999999999999999987753 22222221 1111122222211 113
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
|...+. ..++||+..+..+..+++.|..
T Consensus 81 p~~~v~-----~~CaSg~~al~~A~~~I~sG~~ 108 (426)
T PRK08170 81 PAWTVQ-----RNCASGMQALDSAAANIALGRA 108 (426)
T ss_pred eeeecc-----chhhHHHHHHHHHHHHHHCCCC
Confidence 333332 2388999999999999987764
|
|
| >PRK06059 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.9 Score=38.03 Aligned_cols=98 Identities=19% Similarity=0.109 Sum_probs=57.2
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCC-CcCCcHHHHHHHHHHhhccCCCCceee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS-TPLGDTVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~g-t~~~D~~E~~a~~~~~~~~~~~~~~~v 169 (251)
+.|.|++...-+.. .....+...++++++|+++||+++|||.|....+. ...........+...++-. +.+.
T Consensus 6 v~Ivg~~~t~~~r~---~~~~~~La~~A~~~Al~dAgl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~~----~~~~ 78 (399)
T PRK06059 6 VYILGAGMHPWGKW---GRDFVEYGVVAARAALADAGLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGWN----GAPV 78 (399)
T ss_pred EEEEEecccccCCC---CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCCC----CCce
Confidence 45777766543332 11224566789999999999999999998742111 1111112222233333321 1222
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
.. =+..+++|+..|..+...++.|..
T Consensus 79 ~~-----v~~~Casg~~al~~A~~~I~sG~~ 104 (399)
T PRK06059 79 SS-----SYAACASGSQALQSARAQILAGLC 104 (399)
T ss_pred ec-----ccchhHHHHHHHHHHHHHHHCCCC
Confidence 22 245678889999999999988753
|
|
| >PRK06158 thiolase; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.8 Score=38.01 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=56.2
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 170 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~ 170 (251)
+.|.|++....+.+. .....+-..+++++||++|||+++|||.+.... ..... ....+...++-. +.++.
T Consensus 10 vaIvG~g~t~~~~~~--~~t~~eL~~eA~~~Al~dAgl~~~dID~iv~~~-~~~~~---~~~~la~~lGl~----~~~~~ 79 (384)
T PRK06158 10 TAIVGAATAGLGEAP--GLSAMELLAQAAHRALADAGLTMADVDGLFTAS-PDDAL---WGLSVAEYLGIR----PRFVD 79 (384)
T ss_pred EEEEEeeeccceeCC--CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCCC---cHHHHHHHcCCC----Ceeec
Confidence 567888776543321 111235667899999999999999999987642 21111 111232323221 12221
Q ss_pred cccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 171 STKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 171 ~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
.-+..+++++..+..+...++.|.
T Consensus 80 -----~~~~g~~s~~~al~~A~~~I~sG~ 103 (384)
T PRK06158 80 -----GTMIGGSSFLAHLLPAALALEAGL 103 (384)
T ss_pred -----cccCccHHHHHHHHHHHHHHHcCC
Confidence 124567788888888888888775
|
|
| >PRK05790 putative acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=2.2 Score=37.44 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=54.5
Q ss_pred EEEeeeeecCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHIT--QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~--~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~ 167 (251)
+.|.|.+...-+.... ......+-..++++++|+++||+++|||.+... +.+..+ .......+....+- ... .
T Consensus 4 v~IvG~~~tp~~r~~g~~~~~~~~~La~~A~~~AL~dAgl~~~dID~vi~g-~~~~~~~~~~~~~~~~~~~gl-~~~--~ 79 (393)
T PRK05790 4 VVIVSAARTPIGKFGGALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMG-QVLQAGAGQNPARQAALKAGL-PVE--V 79 (393)
T ss_pred eEEEeeecCCccCCCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCeEEEE-EecCCCCCCcHHHHHHHHcCC-CCC--C
Confidence 4566766554333211 111224456788999999999999999988642 211111 11111111111111 000 1
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
|...+ +..+++|+..+..+..+++.|..
T Consensus 80 ~~~~v-----~~~Casg~~al~~A~~~I~sG~~ 107 (393)
T PRK05790 80 PALTI-----NKVCGSGLKAVALAAQAIRAGDA 107 (393)
T ss_pred ceeee-----cccchHHHHHHHHHHHHHHcCCC
Confidence 21111 23678899999999999988753
|
|
| >PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.84 Score=38.24 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=66.9
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccc----cccCCCcc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRP----FDCGRDGF 77 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----f~~~~~g~ 77 (251)
|-+-+..+|++...+|.+|..+|..|.+|.+|++......+....+.| -.+. +..|| |-....|.
T Consensus 98 Pf~GlygACST~~e~l~laa~~vdgg~a~~vla~tSSH~~tAERQfR~-----P~Ey------G~Qrp~tAqwTVTGaGa 166 (329)
T PF07451_consen 98 PFLGLYGACSTMMESLALAAMLVDGGFADYVLAATSSHFATAERQFRF-----PTEY------GGQRPPTAQWTVTGAGA 166 (329)
T ss_dssp -EEEB--CCCHHHHHHHHHHHHHHTTS-SEEEEEEEE-CCHHHHHT--------GGG------T----TT--EE--EEEE
T ss_pred CccchhhHHHHHHHHHHHHHHHHhCCCcceEEEEeccccchhhhhccC-----chhc------cCCCCCcccEEEeceEE
Confidence 456688999999999999999999999999999987764443322211 1111 11111 11111111
Q ss_pred -chhhhhhcCCeEEEEEeeeeec--CCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHH
Q 040515 78 -ELEHAKKRGAKIYAEVRGYGMS--GDAHHITQPHIDG----KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVE 150 (251)
Q Consensus 78 -~~~~A~~~g~~~~a~i~g~~~~--~~~~~~~~~~~~~----~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E 150 (251)
.++ +.+..+ +|.+..+. -| .....|..++ ++....+.+=|++-|.+|+|-|.|..-+-|.. -
T Consensus 167 ~il~---~~~~~p--~It~~T~GkVvD-~G~~D~~nMGaAMAPAA~dTI~~h~~D~g~~p~dYDlIvTGDLg~v-----G 235 (329)
T PF07451_consen 167 AILS---KEGSGP--RITHATIGKVVD-MGIKDPNNMGAAMAPAAADTIEQHFKDTGRSPDDYDLIVTGDLGKV-----G 235 (329)
T ss_dssp EEEE---SS--SE--EEEEEE----B--SS---TT-HHHHHHHHHHHHHHHHHHHCT--GGG-SEEEESS-HHH-----H
T ss_pred EEEe---cCCCCc--EEEEEEEEEEEE-cCCCCcccchhhHhHHHHHHHHHHHHHhCCChhhcCeEEecchHHH-----H
Confidence 111 111122 22222111 01 1122333333 34456677889999999999999999866533 4
Q ss_pred HHHHHHHhhcc
Q 040515 151 ATAIRTVFSDH 161 (251)
Q Consensus 151 ~~a~~~~~~~~ 161 (251)
..-+..++.+.
T Consensus 236 ~~il~~Ll~~~ 246 (329)
T PF07451_consen 236 RKILRDLLKEK 246 (329)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 45556665443
|
This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A. |
| >PRK06205 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.40 E-value=3.4 Score=36.47 Aligned_cols=101 Identities=12% Similarity=0.020 Sum_probs=55.5
Q ss_pred EEEeeeeecCCCCCCCC--CCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHITQ--PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~--~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+..... .....+-...+++++|+++||+++|||.|... +.+.... ..-...+....+-. ..+
T Consensus 4 v~Ivg~~rTpfgk~~g~~~~~~~~eLa~~A~~~AL~~agl~~~dID~vv~g-~~~~~~~~~~~a~~va~~~Gl~---~~~ 79 (404)
T PRK06205 4 AVICEPVRTPVGRFGGAFKDVPAEELAATVIRALVERTGIDPARIDDVIFG-QGYPNGEAPAIGRVAALDAGLP---VTV 79 (404)
T ss_pred eEEEEeecCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCCChHHHHHHHHcCCC---CCC
Confidence 34556555444332111 11124556789999999999999999988653 2221111 11111111111211 012
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
|...+ ...++||+..+..+...++.|..
T Consensus 80 p~~~V-----~~~CaSg~~Al~~A~~~I~sG~~ 107 (404)
T PRK06205 80 PGMQL-----DRRCGSGLQAVITAAMQVQTGAA 107 (404)
T ss_pred ceeeh-----hhhhhHHHHHHHHHHHHHHcCCC
Confidence 33222 34588999999999999987753
|
|
| >PRK06157 acetyl-CoA acetyltransferase; Validated | Back alignment and domain information |
|---|
Probab=89.31 E-value=2 Score=37.81 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=56.1
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v 169 (251)
+.|.|++...-+... .....+-..++++++|+++||+++|||.+.. ++... .........+...++-. +.|.
T Consensus 9 v~IvG~g~tp~~~~~--~~~~~~L~~ea~~~AL~dagl~~~dID~v~v-g~~~~~~~~~~~~~~~a~~lGl~----~~~~ 81 (398)
T PRK06157 9 VAILGMGCTKFGERW--DAGAEDLMVEAFLEALADAGIEPKDIDAAWF-GTHYDEIGSGKSGTPLSRALRLP----NIPV 81 (398)
T ss_pred eEEEEeccccccccC--CCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE-EeccccccccchhHHHHHHcCCC----CCCE
Confidence 456676655433211 1112456778999999999999999998765 22111 00011112222222211 0121
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
. .=+..++||+..+..++..++.|..
T Consensus 82 ~-----~v~~~c~sg~~ai~~A~~~I~sG~~ 107 (398)
T PRK06157 82 T-----RVENFCATGSEAFRGAVYAVASGAY 107 (398)
T ss_pred E-----EEecccHHHHHHHHHHHHHHHCCCC
Confidence 1 1245688999999999999998753
|
|
| >PRK08304 stage V sporulation protein AD; Validated | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.5 Score=37.45 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.....+++++||++||++++|||++..... .+-..-...+.+.++ +|.-.+- .-+++++..+..+
T Consensus 57 seLa~eAa~~ALekAGI~~~DID~lI~Gdl---l~Q~~sAs~vA~~LG-------IPa~dV~-----gACST~~~AL~lA 121 (337)
T PRK08304 57 RKMMEDAIQQALQKANLKKSDIDYLLAGDL---LNQIISANFAARELG-------IPFLGLY-----GACSTMMESLALG 121 (337)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECC---CCCcchHHHHHHHhC-------CcEEEEe-----ccCHHHHHHHHHH
Confidence 346789999999999999999999987643 111221211212111 2222221 2356677788888
Q ss_pred HHHHhhCCcc
Q 040515 192 VLTIHHGVAP 201 (251)
Q Consensus 192 ~~~l~~~~ip 201 (251)
...++.|..-
T Consensus 122 a~lI~SG~ad 131 (337)
T PRK08304 122 SMLIDGGFAD 131 (337)
T ss_pred HHHHhcCCCC
Confidence 8888877643
|
|
| >cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction | Back alignment and domain information |
|---|
Probab=89.24 E-value=3.8 Score=33.21 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
+....+++++|+++|++++|||.|....+........-+..+...++-. . .+... + ....++++..|..+.
T Consensus 9 ~l~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~-~---~~~~~----i-~~~C~s~~~al~~A~ 79 (254)
T cd00327 9 ELGFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS-G---GPAYS----V-NQACATGLTALALAV 79 (254)
T ss_pred HHHHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC-C---CCcce----e-ccHhHHHHHHHHHHH
Confidence 4567889999999999999999988663322111122223344444321 1 11111 2 245677888888888
Q ss_pred HHHhhCC
Q 040515 193 LTIHHGV 199 (251)
Q Consensus 193 ~~l~~~~ 199 (251)
..++.+.
T Consensus 80 ~~i~~g~ 86 (254)
T cd00327 80 QQVQNGK 86 (254)
T ss_pred HHHHCCC
Confidence 8888764
|
Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products. |
| >PRK09051 beta-ketothiolase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=4 Score=35.95 Aligned_cols=80 Identities=18% Similarity=0.077 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC--cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG--DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~--D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.+....+++++|+++|++|+|||.|... +.+... +......+....+-. ...|...+ +..++||+..+.
T Consensus 28 ~eL~~~A~~~AL~~agi~~~dID~vi~g-~~~~~~~~~~~~a~~~~~~~Gl~---~~~p~~~V-----~~aCaSg~~Al~ 98 (394)
T PRK09051 28 TDLGATVVREALARAGVDPDQVGHVVFG-HVIPTEPRDMYLSRVAAINAGVP---QETPAFNV-----NRLCGSGLQAIV 98 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEEe-eeccccCCCccHHHHHHHHcCCC---CCCceEEe-----cccchHHHHHHH
Confidence 4456789999999999999999987753 222211 222222222211211 01333333 345789999999
Q ss_pred HHHHHHhhCCc
Q 040515 190 FAVLTIHHGVA 200 (251)
Q Consensus 190 ~~~~~l~~~~i 200 (251)
.+...++.|..
T Consensus 99 ~A~~~I~sG~~ 109 (394)
T PRK09051 99 SAAQAILLGDA 109 (394)
T ss_pred HHHHHHHcCCC
Confidence 99999987764
|
|
| >PLN02644 acetyl-CoA C-acetyltransferase | Back alignment and domain information |
|---|
Probab=88.81 E-value=3.4 Score=36.32 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.+-...+++++|+++||+++|||.+..-..............+....+- ...+|...+ +..++||+..+..+
T Consensus 26 ~~L~~~a~~~al~dAgl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl---~~~~p~~~v-----~~~caSg~~av~~A 97 (394)
T PLN02644 26 TELGSIAIQAALERAGVDPALVQEVFFGNVLSANLGQAPARQAALGAGL---PPSTICTTV-----NKVCASGMKAVMLA 97 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCC---CCCCceEEE-----eccchHHHHHHHHH
Confidence 4556789999999999999999998762111001011111111111121 111333322 34689999999999
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
..+++.|..
T Consensus 98 a~~I~sG~~ 106 (394)
T PLN02644 98 AQSIQLGIN 106 (394)
T ss_pred HHHHHcCCC
Confidence 999987743
|
|
| >TIGR02845 spore_V_AD stage V sporulation protein AD | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.7 Score=36.97 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
....+++++||++||++++|||++..... .....-+..+.+.++ +|.-.+ ..-+++++..+..+.
T Consensus 52 eLa~eAa~~ALekAGL~~~DID~IIvGdl---~~Q~~~As~vA~~LG-------IP~fdV-----~~ACSTf~~AL~lAa 116 (327)
T TIGR02845 52 KLMEDAVNLALKKANLKKDDVDFFLAGDL---LNQIITANFVARDLG-------IPFLGL-----YGACSTSMETLALGA 116 (327)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeCC---CCcccHHHHHHHHhC-------CCEEEE-----eccCHHHHHHHHHHH
Confidence 46778999999999999999999987532 111222222222222 222111 123567788888888
Q ss_pred HHHhhCCcc
Q 040515 193 LTIHHGVAP 201 (251)
Q Consensus 193 ~~l~~~~ip 201 (251)
..++.|..-
T Consensus 117 ~lI~SG~ad 125 (327)
T TIGR02845 117 MLVDGGFAD 125 (327)
T ss_pred HHHhCCCCC
Confidence 888887643
|
Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation. |
| >PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.8 Score=36.75 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcCh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 43 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~ 43 (251)
+|+.+|..+-.|...||..|+..+..| ++.||++.+|.....
T Consensus 105 ~~~tal~a~~~sf~~aLleA~~~l~~~-~~~VLlv~~De~~p~ 146 (218)
T PF13723_consen 105 GPNTALAAGEDSFEAALLEAAAQLAEG-AEPVLLVCYDEPLPE 146 (218)
T ss_pred CceEEEecCcchHHHHHHHHHHHHHcC-CCCEEEEEeCCCCCh
Confidence 588999999999999999999999999 999999999985543
|
|
| >PRK07801 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=3.9 Score=35.79 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC----cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG----DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVE 187 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~----D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~ 187 (251)
.+-...+++++|+++||+++|||.+.. |+....+ .......+ ..... ..+|...+ +..++||+..
T Consensus 27 ~~L~~~a~~~al~dagl~~~~ID~vv~-g~~~~~~~~~~~~~~~~~l---~~gl~--~~~p~~~v-----~~acaSg~~A 95 (382)
T PRK07801 27 ADLGAHVLKGLVDRTGIDPAAVDDVIF-GCVDTIGPQAGNIARTSWL---AAGLP--EEVPGVTV-----DRQCGSSQQA 95 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEE-EeeccCCcccccHHHHHHH---HcCCC--CCCceeee-----cchhhhHHHH
Confidence 445678999999999999999998876 3211111 11111111 11110 01222111 3458899999
Q ss_pred HHHHHHHHhhCCc
Q 040515 188 AIFAVLTIHHGVA 200 (251)
Q Consensus 188 l~~~~~~l~~~~i 200 (251)
+..++.+++.|..
T Consensus 96 v~~Aa~~I~sG~~ 108 (382)
T PRK07801 96 IHFAAQAVMSGTQ 108 (382)
T ss_pred HHHHHHHHHCCCC
Confidence 9999999988764
|
|
| >PRK06954 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=3.9 Score=36.05 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.+....+++++|+++||+++|||.+..- +....+.. -..+.....+. ....+.|...+ +..++||+..+..+
T Consensus 32 ~eL~~~a~~~aL~~Agi~~~dID~vi~G-~~~~~~~~-~~~~~~~~l~a-g~~~~~p~~~V-----~~aCaSG~~Av~~A 103 (397)
T PRK06954 32 PQLGAAAIAAAVERAGLKPEQIDEVVMG-CVLPAGQG-QAPARQAALGA-GLPLSVGCTTV-----NKMCGSGMRAAMFA 103 (397)
T ss_pred HHHHHHHHHHHHHHcCCCHHHcCEEEEE-ecCCCccc-hHHHHHHHHcC-CCCCCccEeec-----cccchHHHHHHHHH
Confidence 4456789999999999999999987653 22222221 11111111211 11111333333 34579999999999
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
..+++.|..
T Consensus 104 ~~~I~sG~~ 112 (397)
T PRK06954 104 HDMLVAGSV 112 (397)
T ss_pred HHHHHCCCC
Confidence 999988764
|
|
| >PRK08256 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=2.1 Score=37.54 Aligned_cols=97 Identities=14% Similarity=0.048 Sum_probs=54.2
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEec-CCCCcCCcHHHHHHHHHHhhccCCCCceee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH-ATSTPLGDTVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h-~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v 169 (251)
+.|.|++...-+.. .......+-...+++++|+++|++++|||.+... ..+..... ..+...++-.. ++.
T Consensus 3 v~IvG~~~t~~~~~-~~~~~~~~La~~A~~~Al~dAGl~~~dID~~~~g~~~~~~~~~----~~~~~~lGl~~----~~~ 73 (391)
T PRK08256 3 VFVAGVGMTPFEKP-GASWDYPDMAAEAGRAALADAGIDYDAVQQAYVGYVYGDSTSG----QRALYEVGMTG----IPI 73 (391)
T ss_pred EEEEeccccccccC-CCCCCHHHHHHHHHHHHHHHcCCChHHCCeeEEEEEeCCcchh----HHHHHHcCCCC----CCC
Confidence 34666654433321 1111123456788999999999999999976542 11111111 11111112110 111
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCcc
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAP 201 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip 201 (251)
..=...++||+..+..+...++.|..-
T Consensus 74 -----~~v~~~caSg~~ai~~A~~~I~sG~~d 100 (391)
T PRK08256 74 -----VNVNNNCSTGSTALFLARQAVRSGAAD 100 (391)
T ss_pred -----cccccccHHHHHHHHHHHHHHHCCCCC
Confidence 122456889999999999999988753
|
|
| >PRK06365 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.7 Score=38.72 Aligned_cols=98 Identities=13% Similarity=-0.026 Sum_probs=56.0
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH--HHHHHHHHHhhccCCCCcee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT--VEATAIRTVFSDHATSGSLA 168 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~--~E~~a~~~~~~~~~~~~~~~ 168 (251)
+.|.|++...-+.+... ....+-...++++||+++||+++|||.+....... ..+. .-...+....+-. +.|
T Consensus 18 VaIvG~g~Tpfgr~~~~-~~~~eL~~eA~~~Al~dagl~~~dID~vv~~~~~~-~~~g~~~~~~~~~~~lGl~----~~~ 91 (430)
T PRK06365 18 VYMVAAGVTKFDKASPY-MDFRERVKKAFDYAMNDAGLTLADIDGSVASYFSD-HFQRQLLAGIMVQDYLGLV----PKP 91 (430)
T ss_pred EEEEEeeecCccccCCC-CCHHHHHHHHHHHHHHHcCCCHHHcCEEEEecccc-cccccchhhHHHHHhcCCC----CCc
Confidence 56777776554432111 11135567889999999999999999876532111 1110 0011111111110 122
Q ss_pred eecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 169 v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
.. .-+..++||...+..++..++.|.
T Consensus 92 ~~-----~v~~~~aSg~~ai~~A~~~I~sG~ 117 (430)
T PRK06365 92 SK-----RIEGGGATGGLAFQAGYEEIASGR 117 (430)
T ss_pred eE-----EEeCCcHHHHHHHHHHHHHHHcCC
Confidence 22 223468999999999999998875
|
|
| >PRK08235 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.65 E-value=3.4 Score=36.35 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHH-HHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV-EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~-E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++|+|||.|... +.+..+|.. =...+....+-. ...|...+ +..++||+..+..
T Consensus 27 ~eLa~~A~~~aL~~agl~~~dID~vi~g-~~~~~~~~~~~~~~~~~~~Gl~---~~~p~~~V-----~~~CaSg~~Al~~ 97 (393)
T PRK08235 27 TELGGIAIKEALERANVSAEDVEEVIMG-TVLQGGQGQIPSRQAARAAGIP---WEVQTETV-----NKVCASGLRAVTL 97 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-ecccCCCCCCHHHHHHHHcCCC---CCcceeeh-----hhhhhHHHHHHHH
Confidence 4456789999999999999999988764 222211210 011111111110 01333333 3457899999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+...++.|..
T Consensus 98 A~~~I~sG~~ 107 (393)
T PRK08235 98 ADQIIRAGDA 107 (393)
T ss_pred HHHHHHCCCC
Confidence 9999987753
|
|
| >CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=2.2 Score=36.41 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.+-..++++++|+++|++|+|||++... +.++..-......+...++-. +.+...+. ..+++|+..+..+
T Consensus 52 ~~la~~A~~~aL~~ag~~~~dId~vi~~-s~~~~~~~~~~~~v~~~Lg~~----~~~~~~v~-----~~Casg~~al~~A 121 (326)
T CHL00203 52 TKLAAEAANKALDKAHMDPLEIDLIILA-TSTPDDLFGSASQLQAEIGAT----RAVAFDIT-----AACSGFILALVTA 121 (326)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCchHHHHHHHhCCC----CCceeeec-----ccchhHHHHHHHH
Confidence 3456789999999999999999998864 322221111122233333321 12222221 2357778888778
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
...++.+..
T Consensus 122 ~~~i~sg~~ 130 (326)
T CHL00203 122 TQFIQNGSY 130 (326)
T ss_pred HHHHHcCCC
Confidence 788877653
|
|
| >PRK08313 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.04 E-value=3.5 Score=36.14 Aligned_cols=98 Identities=20% Similarity=0.214 Sum_probs=53.7
Q ss_pred EEEeeeeecCC-CCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH-HHHHHHHHHhhccCCCCcee
Q 040515 91 AEVRGYGMSGD-AHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT-VEATAIRTVFSDHATSGSLA 168 (251)
Q Consensus 91 a~i~g~~~~~~-~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~-~E~~a~~~~~~~~~~~~~~~ 168 (251)
+.|.|++.... +.+.. ....+...+++++||++|||+++|||.|....+.....+. .-...+...++-. +.+
T Consensus 5 v~IvG~g~t~~~~~~~~--~s~~eL~~eAa~~Al~dAgl~~~dID~iv~~~~~~~~~~~~~~~~~va~~LGl~----~~~ 78 (386)
T PRK08313 5 AAVLGTGQTKYVAKRQD--VSMAGLVREAIDRALADAGLTWDDIDAVVVGKAPDFFEGVMMPELFLADALGAT----GKP 78 (386)
T ss_pred EEEEEeecCCcCccCCC--CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEeccccccccccCchHHHHHhcCCC----CCc
Confidence 45778876553 32211 1124567789999999999999999988754211111000 0001122222211 112
Q ss_pred eecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 169 v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
...+ +..+++|...+..+...++.|.
T Consensus 79 ~~~v-----~~~casg~~al~~A~~~I~sG~ 104 (386)
T PRK08313 79 LIRV-----HTAGSVGGSTAVVAASLVQSGV 104 (386)
T ss_pred eEEE-----eccCHHHHHHHHHHHHHHHCCC
Confidence 1111 3346677778888888888764
|
|
| >PLN02932 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=87.02 E-value=1.7 Score=39.12 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHH
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~ 193 (251)
-...+++++|+++|++|+|||++... |.|..--+.-+.-+..-++-+.. +.- =.++....++|+..+-.+-.
T Consensus 151 la~~Aa~~aL~~agi~p~dId~lIv~-tst~~~~Pslaa~V~~~lGlr~~---i~~----fdL~gmGCSggl~aL~lA~~ 222 (478)
T PLN02932 151 VIIGAVDNLFRNTGISPSDIGILVVN-SSTFNPTPSLSSILVNKFKLRDN---IKS----LNLGGMGCSAGVIAIDAAKS 222 (478)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEE-ccCCCCCCcHHHHHHHHhCCCCC---ceE----EEeccchhhhHHHHHHHHHH
Confidence 34578899999999999999998754 34433333333334343432111 111 12344556777777777777
Q ss_pred HHhhC
Q 040515 194 TIHHG 198 (251)
Q Consensus 194 ~l~~~ 198 (251)
.|+.+
T Consensus 223 ll~~~ 227 (478)
T PLN02932 223 LLQVH 227 (478)
T ss_pred HHHcC
Confidence 77764
|
|
| >PRK08142 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=5.4 Score=35.07 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=56.8
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS 170 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~ 170 (251)
+.|.|++...-+.+.. ....+-..+++++||++|||+++|||.+...+ .. ..+ ....+...++-. +.++.
T Consensus 7 vaIvG~g~t~~~~~~~--~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~-~~-~~~--~~~~~~~~lGl~----~~~~~ 76 (388)
T PRK08142 7 AYIVGAYEHPTRKAPD--KSVAQLHAEVAKGALADAGLSLADVDGYFCAG-DA-PGL--GPASMVDYLGLK----LRHVD 76 (388)
T ss_pred EEEEEEeeccceeCCC--CCHHHHHHHHHHHHHHHcCCCHHHCCEEEEcC-CC-CCc--cHHHHHHhCCCC----Ceeec
Confidence 4578888765443211 11245677899999999999999999876521 11 111 111122222221 12332
Q ss_pred cccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 171 STKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 171 ~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
. .+..+++|...+..++..++.|..
T Consensus 77 ~-----v~~gg~s~~~a~~~A~~~I~sG~~ 101 (388)
T PRK08142 77 S-----TETGGSSYLAHVGHAAQAIAAGKC 101 (388)
T ss_pred c-----ccCCcHHHHHHHHHHHHHHHcCCC
Confidence 2 245688888889999999988853
|
|
| >TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III | Back alignment and domain information |
|---|
Probab=86.48 E-value=3.6 Score=34.83 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
......+++++|+++|++++|||.+....+......+.-+..+...++-.. .+...+ ...+++|+..|..+
T Consensus 52 ~~la~~A~~~al~~agl~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lGl~~----~~~~~v-----~~~C~s~~~al~~A 122 (318)
T TIGR00747 52 STMGFEAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLGIKG----IPAFDL-----SAACAGFIYALSVA 122 (318)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCChHHHHHHHHhCCCC----CcEeeh-----hhhhHHHHHHHHHH
Confidence 445678999999999999999998875432211112222223334343211 222222 23467788888888
Q ss_pred HHHHhhCC
Q 040515 192 VLTIHHGV 199 (251)
Q Consensus 192 ~~~l~~~~ 199 (251)
...++.+.
T Consensus 123 ~~~i~~g~ 130 (318)
T TIGR00747 123 KQYIESGK 130 (318)
T ss_pred HHHHHcCC
Confidence 88887664
|
Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment. |
| >PRK07937 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=5 Score=34.78 Aligned_cols=46 Identities=7% Similarity=0.159 Sum_probs=32.1
Q ss_pred EEEeeeeecCCCCCCCCCCCC-hHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 91 AEVRGYGMSGDAHHITQPHID-GKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~-~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
+.|.|++...-+.... .... .+-..+++++||++|||+++|||.+.
T Consensus 4 vaIvG~g~t~~~~~~~-~~~~~~el~~eA~~~Al~DAgl~~~dID~~~ 50 (352)
T PRK07937 4 VAVVGFAQAPHVRRTD-GTTNGVEMLMPCFAELYAELGITKSDIGFWC 50 (352)
T ss_pred EEEEEeeccccccCCC-CCCcHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 4577877665433211 0112 45678899999999999999999884
|
|
| >PRK05656 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=5.1 Score=35.25 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=56.2
Q ss_pred EEEeeeeecCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc--HHHHHHHHHHhhccCCCCc
Q 040515 91 AEVRGYGMSGDAHHIT--QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD--TVEATAIRTVFSDHATSGS 166 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~--~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D--~~E~~a~~~~~~~~~~~~~ 166 (251)
++|.|.+...-+.+.. ......+....+++++|+++|++++|||.|... +.+...+ ..-.. +....+-. ..
T Consensus 4 v~Ivg~~rTpfgk~~g~~~~~~~~~La~~A~~~AL~~agl~~~dID~vi~g-~~~~~~~~~~~a~~-va~~lGl~---~~ 78 (393)
T PRK05656 4 VVIVAATRTAIGSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILG-QVLTAGAGQNPARQ-AAIKAGLP---HS 78 (393)
T ss_pred EEEEEcccCCccCCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-EecCCCCCCcHHHH-HHHHcCCC---CC
Confidence 4566666554443211 111123456789999999999999999987763 2211111 11111 11212211 01
Q ss_pred eeeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 167 LAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 167 ~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
.|...+ +..+++|+..+..+...++.|..
T Consensus 79 ~p~~~V-----~~~Casg~~ai~~A~~~I~sG~~ 107 (393)
T PRK05656 79 VPAMTL-----NKVCGSGLKALHLAAQAIRCGDA 107 (393)
T ss_pred cceEEe-----cccchhHHHHHHHHHHHHHcCCC
Confidence 233233 34678999999999999988764
|
|
| >PRK12404 stage V sporulation protein AD; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=2 Score=36.53 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
....+++++||+++||+++|||++.....- +..+=..-+.+-++ +|...+ ..-+++++..+..+.
T Consensus 56 ~L~~EA~~~AL~kAGI~~~DID~i~vGdL~---nQ~ipssfvar~LG-------IP~~gV-----~gACSTg~eAL~lAa 120 (334)
T PRK12404 56 KLLEEACSRAIEKAKLRKEDIQFFLAGDLM---NQITPTSFAARTLG-------IPYLGL-----FGACSTSMEGLALAA 120 (334)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEecC---CCcCcHHHHHHHhC-------CCccce-----eecCHHHHHHHHHHH
Confidence 456789999999999999999999986433 11111111112122 232111 223567788888888
Q ss_pred HHHhhCCcc
Q 040515 193 LTIHHGVAP 201 (251)
Q Consensus 193 ~~l~~~~ip 201 (251)
+.++.|..-
T Consensus 121 ~~VaSG~Ad 129 (334)
T PRK12404 121 LIVNSGGAK 129 (334)
T ss_pred HHHHcCCCC
Confidence 888887653
|
|
| >PRK09052 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=6.6 Score=34.67 Aligned_cols=81 Identities=16% Similarity=0.148 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHc-CCCCCCccEEEec-CCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQS-GLQSHQVDYVNAH-ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~A-gi~~~dId~i~~h-~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.+-...+++++|+++ ||+++|||.|..- .... ..+.....-+........ .++|...+ +..++||+..+.
T Consensus 32 ~eLa~~A~~~AL~~a~gl~~~dID~vi~g~~~~~-~~~~~~~ar~~~~~~Gl~--~~~p~~~V-----~~aCaSg~~Al~ 103 (399)
T PRK09052 32 DDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPE-AEQGLNVARIGALLAGLP--NSVGGVTV-----NRFCASGLQAVA 103 (399)
T ss_pred HHHHHHHHHHHHHhccCcCHHHCCEEEEEecCCC-CCCCchHHHHHHHHcCCC--CCCceeee-----cchhhHHHHHHH
Confidence 455678999999997 9999999987653 2221 111111111111111111 11333333 346789999999
Q ss_pred HHHHHHhhCCc
Q 040515 190 FAVLTIHHGVA 200 (251)
Q Consensus 190 ~~~~~l~~~~i 200 (251)
.+...++.|..
T Consensus 104 ~A~~~I~sG~~ 114 (399)
T PRK09052 104 MAADRIRVGEA 114 (399)
T ss_pred HHHHHHHCCCC
Confidence 99999988764
|
|
| >PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2 | Back alignment and domain information |
|---|
Probab=86.14 E-value=2.7 Score=34.82 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecC-CCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHA-TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~-~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
+-...+++.+|++++|+|++||.+..-- .....+..+-..+. +..... ..+|...+ +-.++||+..+..+
T Consensus 28 ~L~~~a~~~al~~~~i~~~~Id~v~~G~~~~~~~g~~~ar~~~--l~aGl~--~~vp~~~V-----~~~CaSG~~Av~~a 98 (264)
T PF00108_consen 28 DLAAEAVKAALERAGIDPEDIDAVIVGNVLQEGEGQNIARQAA--LAAGLP--ESVPATTV-----NRACASGLQAVHLA 98 (264)
T ss_dssp HHHHHHHHHHHHHHTSHGGGEEEEEEE-SSSCTTTCHHHHHHH--HHTTS---TTSEEEEE-----E-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhhhhcCcccccccccchhhhhhhh--hhcccc--cccceeee-----hhhhhHHHHHHHHh
Confidence 4567889999999999999999876632 22222222212111 111111 12555554 45589999999999
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
..+++.|..
T Consensus 99 ~~~I~sG~~ 107 (264)
T PF00108_consen 99 AMAIASGEA 107 (264)
T ss_dssp HHHHHTTS-
T ss_pred hhhhcCCCc
Confidence 999998764
|
3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B .... |
| >PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase | Back alignment and domain information |
|---|
Probab=86.08 E-value=1.1 Score=34.40 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=31.8
Q ss_pred eecchhhHHHHHHHHHHHHHHHhCCcC--EEEEeCcCC
Q 040515 4 HAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTES 39 (251)
Q Consensus 4 ~tv~~~casgl~Al~~A~~~I~~G~~d--~alvgg~e~ 39 (251)
+-+-.+|-+|..||..|+.+|+++..| .+||++.|.
T Consensus 111 ~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDi 148 (174)
T PF01154_consen 111 VEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDI 148 (174)
T ss_dssp EEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEE
T ss_pred eehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccc
Confidence 445789999999999999999998765 899999986
|
Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A .... |
| >PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=86.04 E-value=3.8 Score=34.98 Aligned_cols=80 Identities=16% Similarity=0.085 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.+...++++++|+++|++++|||.+...........+.-+.-+...++-.. .++...+ . ..+++|+..+..+
T Consensus 62 ~~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl~~---~~~~~~v----~-~~C~~~~~al~~A 133 (338)
T PRK09258 62 SDGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLPK---SCANFDV----S-NACLGFLNGMLDA 133 (338)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcCCCC---CCceeeh----h-hhhHHHHHHHHHH
Confidence 356678999999999999999999875322112222222222333333210 1222222 1 2466777777777
Q ss_pred HHHHhhCC
Q 040515 192 VLTIHHGV 199 (251)
Q Consensus 192 ~~~l~~~~ 199 (251)
...++.+.
T Consensus 134 ~~~i~~g~ 141 (338)
T PRK09258 134 ANMIELGQ 141 (338)
T ss_pred HHHHHcCC
Confidence 77776653
|
|
| >PLN03168 chalcone synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.9 Score=36.70 Aligned_cols=75 Identities=16% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeeccc-CCccchhhhhhHHHHHHHHH
Q 040515 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-GAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 115 ~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k-~~~Gh~~~AsG~~~l~~~~~ 193 (251)
-.+++++||+++|++++|||+|... |.|...-+.-..-+...++-... ++ ....+..+++++..|-.+..
T Consensus 105 a~~Aa~~AL~~ag~~~~dId~lI~~-T~Tg~~~Ps~a~~l~~~LGl~~~--------~~r~~d~~~gC~g~~~aL~~A~~ 175 (389)
T PLN03168 105 AAEAAQKAIKEWGGRKSDITHIVFA-TTSGVNMPGADHALAKLLGLKPT--------VKRVMMYQTGCFGGASVLRVAKD 175 (389)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCccHHHHHHHHhCcCCc--------ceeeeeeCCccHHHHHHHHHHHH
Confidence 3578899999999999999998654 33333223333333333332110 11 12234455666777766666
Q ss_pred HHhhC
Q 040515 194 TIHHG 198 (251)
Q Consensus 194 ~l~~~ 198 (251)
.++.+
T Consensus 176 ~i~~~ 180 (389)
T PLN03168 176 LAENN 180 (389)
T ss_pred HHHhC
Confidence 66654
|
|
| >PLN02287 3-ketoacyl-CoA thiolase | Back alignment and domain information |
|---|
Probab=85.94 E-value=5.7 Score=35.67 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=55.5
Q ss_pred EEEeeeeecCCCCC-CCC--CCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc--HHHHHHHHHHhhccCCCC
Q 040515 91 AEVRGYGMSGDAHH-ITQ--PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD--TVEATAIRTVFSDHATSG 165 (251)
Q Consensus 91 a~i~g~~~~~~~~~-~~~--~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D--~~E~~a~~~~~~~~~~~~ 165 (251)
++|.|.+...-+.. ... .....+-..++++++|+++|++++|||.|.. |+...... .....-+....+-. .
T Consensus 48 V~IVG~grTpfgk~~~g~~~~~s~~eLa~eA~~~AL~dAgl~~~dID~vv~-G~~~~~~~~~~~~~r~~a~~~Gl~---~ 123 (452)
T PLN02287 48 VVIVAAYRTPICKAKRGGFKDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVV-GTVLAPGSQRANECRMAAFYAGFP---E 123 (452)
T ss_pred EEEEEeecCCCccCCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEE-EeecCcccccchHHHHHHHHCCCC---C
Confidence 55777775544431 111 1112445678899999999999999998864 22221111 11111111111111 0
Q ss_pred ceeeecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 166 ~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
.+|...+ +..++||+..+..+..+++.|.
T Consensus 124 ~~pa~~V-----~~~CaSG~~Ai~~Aa~~I~sG~ 152 (452)
T PLN02287 124 TVPVRTV-----NRQCSSGLQAVADVAAAIKAGF 152 (452)
T ss_pred CcceEEE-----eccCchHHHHHHHHHHHHHcCC
Confidence 1333222 3567899999999999988764
|
|
| >PLN02377 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=85.90 E-value=3.8 Score=37.24 Aligned_cols=76 Identities=8% Similarity=0.078 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHH
Q 040515 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLT 194 (251)
Q Consensus 115 ~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~ 194 (251)
...+++++|+++|++|+|||++....++.. --+.-+.-+...++-+.. +.-. .++-...++|+..+-.+-..
T Consensus 176 ~~~A~~~aL~kaGi~p~dID~LVv~cS~~~-~~PSlaa~V~~~LGlr~~---v~af----dL~gmGCsggl~aL~lA~~l 247 (502)
T PLN02377 176 MFGALDNLFANTNVNPKDIGILVVNCSLFN-PTPSLSAMIVNKYKLRGN---IRSF----NLGGMGCSAGVIAVDLAKDM 247 (502)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCC-CCCcHHHHHHHHhCCCCC---CeEE----ecccchhhHHHHHHHHHHHH
Confidence 346788999999999999999987544431 122233334444442211 1111 23334456677777666666
Q ss_pred HhhC
Q 040515 195 IHHG 198 (251)
Q Consensus 195 l~~~ 198 (251)
|+.+
T Consensus 248 l~~~ 251 (502)
T PLN02377 248 LQVH 251 (502)
T ss_pred HHcC
Confidence 6654
|
|
| >PRK06445 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.90 E-value=2.5 Score=37.18 Aligned_cols=80 Identities=11% Similarity=0.148 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC--cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG--DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~--D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.+...++++++|+++||+++|||.+..- +....+ ........ .+...... ++|.. .=+..++||+..+.
T Consensus 33 ~~L~~~a~~~AL~~agl~~~dID~vi~g-~~~~~~~~~~~~~~~~-~l~a~~~~--~~p~~-----~V~~~CaSg~~ai~ 103 (394)
T PRK06445 33 EELAAMLINRLIEKTGIKPEEIDDIITG-CALQVGENWLYGGRHP-IFLARLPY--NIPAM-----AVDRQCASSLTTVS 103 (394)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCeeEEE-eecCCCcccccHHHHH-HHHcCCCC--CCcch-----hhhhhhHHHHHHHH
Confidence 4456789999999999999999987653 322211 11112211 12222111 12222 22566899999999
Q ss_pred HHHHHHhhCCc
Q 040515 190 FAVLTIHHGVA 200 (251)
Q Consensus 190 ~~~~~l~~~~i 200 (251)
.++.+++.|..
T Consensus 104 ~A~~~I~sG~~ 114 (394)
T PRK06445 104 IGAMEIATGMA 114 (394)
T ss_pred HHHHHHHcCCC
Confidence 99999998764
|
|
| >TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases | Back alignment and domain information |
|---|
Probab=85.88 E-value=3.7 Score=36.04 Aligned_cols=80 Identities=18% Similarity=0.097 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.....++++++|+++|++++|||.+... +.++..+ ......+....+-. ...|...+. ..+++|+..+..
T Consensus 22 ~~La~~A~~~Al~dAgl~~~dID~vv~g-~~~~~~~~~~~a~~va~~lGl~---~~~~~~~v~-----~~Casg~~al~~ 92 (386)
T TIGR01930 22 EDLGAAVIKELLERNPLDPELIDDVIFG-NVLQAGEQQNIARQAALLAGLP---ESVPAYTVN-----RQCASGLQAVIL 92 (386)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCCChHHHHHHHHcCCC---CCceeeeec-----chhhHHHHHHHH
Confidence 3456789999999999999999998763 3222211 21121122222211 112332222 457888989999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+...++.|..
T Consensus 93 A~~~I~sG~~ 102 (386)
T TIGR01930 93 AAQLIRAGEA 102 (386)
T ss_pred HHHHHHCCCC
Confidence 9999988764
|
This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt |
| >PRK06366 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=5.7 Score=34.89 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEec-CCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAH-ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h-~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+-...+++++|+++||+++|||.+..- ......+...... +....+- ...+|..++. ..++||+..+..
T Consensus 27 ~~L~~~a~~~al~dagi~~~dID~vi~g~~~~~~~~~~~a~~-~~~~~Gl---~~~~p~~~v~-----~~caSg~~av~~ 97 (388)
T PRK06366 27 PQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGVGQNPAGQ-AAYHAGL---PFGVTKYTVN-----VVCASGMLAVES 97 (388)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCccCcHHHH-HHHHCCC---CCCCcceeee-----chhhHHHHHHHH
Confidence 3456789999999999999999987652 1101111111111 1111111 0112333332 468999999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
++.+++.|..
T Consensus 98 Aa~~I~sG~~ 107 (388)
T PRK06366 98 AAREIMLGER 107 (388)
T ss_pred HHHHHhcCCC
Confidence 9999988764
|
|
| >COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.63 E-value=2.1 Score=36.60 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEE-ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhh
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVN-AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGA 182 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~-~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~A 182 (251)
+.+..+++++|++||++.+|||.|- +.|.|-.-.=.+-+.+-+.+--.. ..|+..+....||.+.+
T Consensus 52 e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~----~kPli~VnH~~gHi~a~ 118 (342)
T COG0533 52 ENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALAL----NKPLIPVNHLEGHIEAA 118 (342)
T ss_pred HHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHh----CCCEeecchHHHHHHHH
Confidence 4566789999999999999999975 556666544343333333321111 15777777788888765
|
|
| >PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=85.58 E-value=3 Score=36.12 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.....++++++|+++|++++|||++... +.++ ..-+.-+..+...++-... ++.-- + ....++++..|..
T Consensus 61 ~~la~~Aa~~aL~~a~~~~~dId~lI~~-t~t~d~~~P~~a~~v~~~Lg~~~~---~~~~d----i-~~~C~g~~~aL~~ 131 (353)
T PRK12880 61 SDLGKHAANTLLQGLNIDKNSLDALIVV-TQSPDFFMPSTACYLHQLLNLSSK---TIAFD----L-GQACAGYLYGLFV 131 (353)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-cCCCCCCCCcHHHHHHHHhCCCCC---ceEEe----h-hhhhHHHHHHHHH
Confidence 3456789999999999999999999865 3332 2333344444444443211 11111 1 1234555666666
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 132 A~~~i~~~~ 140 (353)
T PRK12880 132 AHSLIQSGL 140 (353)
T ss_pred HHHHHHcCC
Confidence 666666554
|
|
| >PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=85.49 E-value=5.4 Score=33.97 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||++.. ++.++.. -+.-..-+...++-... ..+...+. ..+++++..+..
T Consensus 53 ~~la~~Aa~~aL~~ag~~~~dId~li~-~~~~~~~~~p~~a~~v~~~lgl~~~--~~~~~~v~-----~~C~~~~~al~~ 124 (329)
T PRK07204 53 SYMGAEAAKKAVEDAKLTLDDIDCIIC-ASGTIQQAIPCTASLIQEQLGLQHS--GIPCFDIN-----STCLSFITALDT 124 (329)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-ECCCCCCCCccHHHHHHHHhCCCCC--CceEEEcc-----chhHHHHHHHHH
Confidence 345678999999999999999998753 3443321 12233334444432110 02222221 245666777766
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 125 a~~~l~~g~ 133 (329)
T PRK07204 125 ISYAIECGR 133 (329)
T ss_pred HHHHHHCCC
Confidence 766666654
|
|
| >PRK07851 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.48 E-value=3 Score=36.86 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHc-CCCCCCccEEEecCCCCcCCc--HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHH
Q 040515 112 GKGAILAMTRALKQS-GLQSHQVDYVNAHATSTPLGD--TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEA 188 (251)
Q Consensus 112 ~~~~~~a~~~al~~A-gi~~~dId~i~~h~~gt~~~D--~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l 188 (251)
.+-..++++++|+++ ||+++|||.+.. ++..+... ..-..-+....+-. ++|...+ +..++||+..+
T Consensus 28 ~eL~~~A~~~AL~da~gl~~~dID~vv~-g~~~~~~~~g~~~~~~~a~~lGl~----~~p~~~v-----~~~caSG~~av 97 (406)
T PRK07851 28 DDLAAQMVRAALDKVPALDPTDIDDLML-GCGLPGGEQGFNMARVVAVLLGYD----FLPGTTV-----NRYCSSSLQTT 97 (406)
T ss_pred HHHHHHHHHHHHHhccCCCHHHCCEEEE-EcccccccccCCHHHHHHHHcCCC----CCCeeee-----eccchhHHHHH
Confidence 345678999999997 999999998865 32221111 10011111111110 1222222 34689999999
Q ss_pred HHHHHHHhhCCc
Q 040515 189 IFAVLTIHHGVA 200 (251)
Q Consensus 189 ~~~~~~l~~~~i 200 (251)
..+...++.|..
T Consensus 98 ~~Aa~~I~sG~~ 109 (406)
T PRK07851 98 RMAFHAIKAGEG 109 (406)
T ss_pred HHHHHHHHCCCC
Confidence 999999988754
|
|
| >PRK07855 lipid-transfer protein; Provisional | Back alignment and domain information |
|---|
Probab=84.58 E-value=7 Score=34.33 Aligned_cols=93 Identities=23% Similarity=0.224 Sum_probs=54.4
Q ss_pred EEEeeeeecCCCCCCCCCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceee
Q 040515 91 AEVRGYGMSGDAHHITQPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~-~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v 169 (251)
+.|.|++...-+.+ +... .+-..+++++||+.|||+++|||.+...... ... . ..+...++-.. ..++
T Consensus 6 v~IvG~g~t~~~r~---~~~~~~~L~~eA~~~Al~DAgl~~~dID~~~~~~~~--~~~--~-~~l~~~lGl~~---~~~~ 74 (386)
T PRK07855 6 AAIVGIGATEFSKN---SGRSELRLACEAVLAALDDAGLAPSDVDGLVTFTMD--TNP--E-IAVARALGIGE---LKFF 74 (386)
T ss_pred EEEEEeeecccccC---CCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCc--ccc--H-HHHHHHCCCCC---Ccce
Confidence 46788887543332 1222 3456789999999999999999988752211 111 1 11222222110 0121
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
..+ +..+++|...+..+...++.|.
T Consensus 75 ~~v-----~~gg~sg~~~~~~A~~~I~sG~ 99 (386)
T PRK07855 75 SRI-----HYGGGAACATVQQAAMAVATGV 99 (386)
T ss_pred eee-----cCCcHHHHHHHHHHHHHHHCCC
Confidence 111 3457888888888988888774
|
|
| >PRK06066 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=8.3 Score=33.86 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=52.2
Q ss_pred EEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcC-CCC-CCccEEEecCCCCcCCc--HHHHHHHHHHhhccCCCCc
Q 040515 91 AEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSG-LQS-HQVDYVNAHATSTPLGD--TVEATAIRTVFSDHATSGS 166 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Ag-i~~-~dId~i~~h~~gt~~~D--~~E~~a~~~~~~~~~~~~~ 166 (251)
+.|.|++...-+.+.. .....+...+++++||+.|| |++ +|||.+... +...... ..... +...++.. .
T Consensus 6 vaIvG~g~t~~~~~~~-~~s~~eL~~eA~~~Al~DAG~l~~~~dId~~~~~-~~~~~~~~~~~~~~-~~~~lg~~----~ 78 (385)
T PRK06066 6 VAIVGIGWYGFRPTTP-EVSFREMMFEAASRAYKDAGNINPRRDVDSFISC-QEDFWEGIAIADEF-APDQIGGA----M 78 (385)
T ss_pred EEEEEeeecCCcCCCC-CCCHHHHHHHHHHHHHHhcCCCCChhcCCEEEEe-cCcccCcccccchh-HHHHcccC----C
Confidence 4577877665442111 11124567889999999999 997 799987652 2111100 00001 11222221 0
Q ss_pred eeeecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 167 LAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 167 ~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
.|...+ +++|...+..++.+++.|.
T Consensus 79 ~~~~~v--------~~sg~~a~~~A~~aV~sG~ 103 (385)
T PRK06066 79 RPTMTV--------AGDGLQGLAHAVMHINSGL 103 (385)
T ss_pred CCeEEE--------eCcHHHHHHHHHHHHHcCC
Confidence 122221 5678888888999888874
|
|
| >PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=84.55 E-value=4.9 Score=33.97 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.+.. ++.++.. .+.-...+...++-. ..+...+ . ..+++|+..|..
T Consensus 53 ~~la~~A~~~al~~agl~~~~id~vi~-~~~~~~~~~~~~~~~i~~~lG~~----~~~~~~v----~-~~Casg~~al~~ 122 (319)
T PRK09352 53 SDLATEAAKKALEAAGIDPEDIDLIIV-ATTTPDYAFPSTACLVQARLGAK----NAAAFDL----S-AACSGFVYALST 122 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EcCCCCCCCchHHHHHHHHhCCC----CCcEeec----c-ccchhHHHHHHH
Confidence 345678899999999999999998765 3333221 122222333333321 1232222 1 347788888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 123 A~~~i~~g~ 131 (319)
T PRK09352 123 ADQFIRSGA 131 (319)
T ss_pred HHHHHHcCC
Confidence 888888764
|
|
| >PRK06504 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=8.1 Score=33.99 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEec-CCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAH-ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h-~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+-...+++++|++++|+++|||.+..- .......+. . .+....+.... ...+|...+ +..++||+..+..
T Consensus 27 ~~L~~~a~~~al~~a~l~~~~Id~vi~G~~~~~~~~~~-~-~ar~~~l~~gl-~~~vP~~tV-----~~~CaSG~~Ai~~ 98 (390)
T PRK06504 27 ADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQAT-N-VARNAVLASKL-PESVPGTSI-----DRQCGSSQQALHF 98 (390)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccc-c-HHHHHHHHcCC-CCCCceEEE-----echhhHHHHHHHH
Confidence 3456788999999999999999987763 221110001 0 11111111111 112444444 4558999999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
++.+++.|..
T Consensus 99 A~~~I~sG~~ 108 (390)
T PRK06504 99 AAQAVMSGTM 108 (390)
T ss_pred HHHHHHCCCC
Confidence 9999998865
|
|
| >PRK09268 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=5.3 Score=35.61 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecC-CCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHA-TSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~-~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+-...+++++|+++|++++|||.+..-- .+. ..+...... ..+..... ...|..++ +..++||+..+..
T Consensus 32 ~eL~~~a~~~al~~agl~~~~Id~vv~G~~~~~-~~~~~~~r~--~~l~~gl~-~~~p~~~V-----~~~CaSG~~ai~~ 102 (427)
T PRK09268 32 QDMLTAALDGLVDRFGLQGERLGEVVAGAVLKH-SRDFNLTRE--CVLGSALS-PYTPAYDL-----QQACGTGLEAAIL 102 (427)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEecccC-CccccHHHH--HHHHcCCC-CCCceeee-----echhhHHHHHHHH
Confidence 34567889999999999999999877631 111 112111111 11111100 01233333 3468999999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+..+++.|..
T Consensus 103 A~~~I~sG~~ 112 (427)
T PRK09268 103 VANKIALGQI 112 (427)
T ss_pred HHHHHHCCCC
Confidence 9999988764
|
|
| >cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=84.05 E-value=7 Score=34.22 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.+... +.+...+ ..-+..+...++-.. .+|...+ +..+++|+..+..
T Consensus 23 ~~La~~A~~~AL~dAgl~~~dID~vi~~-~~~~~~~~~~~a~~v~~~lGl~~---~~~~~~v-----~~~c~s~~~al~~ 93 (386)
T cd00751 23 DDLGAAVIKALLERAGLDPEEVDDVIMG-NVLQAGEGQNPARQAALLAGLPE---SVPATTV-----NRVCGSGLQAVAL 93 (386)
T ss_pred HHHHHHHHHHHHHhcCCCHHHCCEEEEE-eccCCCCCChHHHHHHHHcCCCC---CCchhhh-----ccccHHHHHHHHH
Confidence 4556789999999999999999998753 2221111 111111222222110 0222211 3457888888989
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+...++.|..
T Consensus 94 A~~~I~sG~~ 103 (386)
T cd00751 94 AAQSIAAGEA 103 (386)
T ss_pred HHHHHHCCCC
Confidence 9888887753
|
They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=83.97 E-value=5.1 Score=33.97 Aligned_cols=78 Identities=23% Similarity=0.145 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||++... +.++ ...+.-+.-+...++-. +.+...+ . ..+++|+..|..
T Consensus 54 ~~la~~A~~~al~~ag~~~~~Id~li~~-~~~~~~~~~~~a~~l~~~lg~~----~~~~~~v----~-~~C~~~~~al~~ 123 (325)
T PRK12879 54 SDLAIKAAERALARAGLDAEDIDLIIVA-TTTPDYLFPSTASQVQARLGIP----NAAAFDI----N-AACAGFLYGLET 123 (325)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-cCCCCCCCChHHHHHHHHhCCC----CCcEEEE----C-ccchHHHHHHHH
Confidence 4456789999999999999999987643 2221 11122222233333321 1122111 1 245677777777
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...|+.+.
T Consensus 124 A~~~l~~g~ 132 (325)
T PRK12879 124 ANGLITSGL 132 (325)
T ss_pred HHHHHHcCC
Confidence 877787653
|
|
| >PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species | Back alignment and domain information |
|---|
Probab=83.82 E-value=1.1 Score=37.55 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 7 ~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
..||++|+.+|..|.++++.-....+||+.+|..+
T Consensus 142 GMGCsAgliai~lA~~lL~~~p~~~ALVVstE~~s 176 (290)
T PF08392_consen 142 GMGCSAGLIAIDLAKDLLQAHPNSYALVVSTENIS 176 (290)
T ss_pred CCcchhhHHHHHHHHHHHHhCCCcEEEEEEEeecc
Confidence 35899999999999999999999999999999844
|
The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane |
| >PRK08131 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=8.5 Score=34.01 Aligned_cols=82 Identities=20% Similarity=0.171 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.+-...+++++|+++||+++|||.+..--......+.... +...+.... ....+|..++ +..++||+..+..+
T Consensus 27 ~eL~~~a~~~al~~agi~~~~Id~v~~G~~~~~~~~~~~~-ar~~~~~~G-lp~~~p~~tV-----~~~CaSG~~Ai~~A 99 (401)
T PRK08131 27 DDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGEDSRNV-ARNALLLAG-LPVTVPGQTV-----NRLCASGLAAVIDA 99 (401)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccH-HHHHHHhcC-CCCCCceeee-----echhhhHHHHHHHH
Confidence 3456788999999999999999987663221000110001 111111111 1111444444 34689999999999
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
..+++.|..
T Consensus 100 ~~~I~sG~~ 108 (401)
T PRK08131 100 ARAITCGEG 108 (401)
T ss_pred HHHHHCCCC
Confidence 999997764
|
|
| >PLN02192 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.8 Score=36.62 Aligned_cols=76 Identities=8% Similarity=0.074 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHH
Q 040515 115 AILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLT 194 (251)
Q Consensus 115 ~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~ 194 (251)
...+++++|+++|++|+|||++....+ .-.--+.-+.-+..-++-+.. +.-- .++....++|+..+-.+-..
T Consensus 180 ~~~Aa~~aL~kaGi~p~DIDiLIv~~S-~~~~~PSlaa~I~n~lGlr~~---i~af----dLsgmGCSggl~aLdlA~~l 251 (511)
T PLN02192 180 MFGAIDQLLAKTSVKPKDIGILIVNCS-LFNPTPSLSAMVINHYKLRGN---ILSY----NLGGMGCSAGLISIDLAKHL 251 (511)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECC-CCCCCchHHHHHHHHhCCCCC---ceEE----EcccchhhhHHHHHHHHHHH
Confidence 346788999999999999999987633 222223333434444442211 1111 23344566777777666666
Q ss_pred HhhC
Q 040515 195 IHHG 198 (251)
Q Consensus 195 l~~~ 198 (251)
|+.+
T Consensus 252 L~a~ 255 (511)
T PLN02192 252 LQVH 255 (511)
T ss_pred HHcC
Confidence 6654
|
|
| >PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.50 E-value=11 Score=33.49 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhh-ccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFS-DHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~-~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
+-...+++++|+++||+|+|||.+..--. ...+.. ..+.+... .......+|..++ +..++||+..+..+
T Consensus 31 eL~~~a~~~al~~agl~~~~ID~vi~G~~-~~~~~~---~~~ar~~a~~aGl~~~~P~~tV-----~~aCaSG~~Ai~~A 101 (428)
T PRK08963 31 DLGKMVVGELLARSEIDPELIEQLVFGQV-VQMPEA---PNIAREIVLGTGMNVHTDAYSV-----SRACATSFQAVANV 101 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEecc-CCCCCc---cHHHHHHHHHCCCCCCCcceee-----hhhhHHHHHHHHHH
Confidence 44578999999999999999998766421 111110 11111110 0000001344333 34689999999999
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
+..++.|..
T Consensus 102 a~~I~sG~~ 110 (428)
T PRK08963 102 AESIMAGTI 110 (428)
T ss_pred HHHHHCCCC
Confidence 999987754
|
|
| >cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs | Back alignment and domain information |
|---|
Probab=83.35 E-value=3.7 Score=35.54 Aligned_cols=78 Identities=19% Similarity=0.137 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
....++++++|+++|++++|||++... +.+....+.-..-+...++-.. .++... +.+..+++++..|..+.
T Consensus 87 ~la~~Aa~~aL~~a~~~~~~Id~li~~-s~~~~~~P~~a~~i~~~lgl~~---~~~~~d----v~~~~C~~~~~al~~A~ 158 (361)
T cd00831 87 ELAEEAARGALDEAGLRPSDIDHLVVN-TSTGNPTPSLDAMLINRLGLRP---DVKRYN----LGGMGCSAGAIALDLAK 158 (361)
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEEE-CCCCCCCCCHHHHHHHHhCCCc---ccchhc----cccccchhHHHHHHHHH
Confidence 345688999999999999999998753 3343333333333333333210 011111 22234566677776666
Q ss_pred HHHhhC
Q 040515 193 LTIHHG 198 (251)
Q Consensus 193 ~~l~~~ 198 (251)
..++.+
T Consensus 159 ~~~~~~ 164 (361)
T cd00831 159 DLLEAN 164 (361)
T ss_pred HHHHHC
Confidence 666654
|
PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. |
| >PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=83.13 E-value=5.1 Score=34.99 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.+... +.++ ...+.-...+...++-. +.+... + ...+++|+..+..
T Consensus 64 ~~La~~A~~~aL~~agi~~~dId~li~~-s~~~~~~~p~~a~~v~~~Lgl~----~~~~~~----v-~~~Cas~~~al~~ 133 (378)
T PRK06816 64 AQMAAEAIRDLLDDAGFSLGDIELLACG-TSQPDQLMPGHASMVHGELGAP----PIEVVS----S-AGVCAAGMMALKY 133 (378)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-ECCCCcCChHHHHHHHhhCCCC----CCceee----e-cCcCHHHHHHHHH
Confidence 3456788999999999999999987653 3222 12222222233333211 122211 1 2336788888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 134 A~~~i~sg~ 142 (378)
T PRK06816 134 AYLSVKAGE 142 (378)
T ss_pred HHHHHHCCC
Confidence 877777654
|
|
| >PRK04262 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.09 E-value=4.1 Score=35.11 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.+.. ++.++... +.-+.-+...++-. ...+... + ...+++++..+..
T Consensus 52 ~~la~~Aa~~aL~~ag~~~~dId~li~-~s~~~~~~~p~~a~~v~~~Lgl~---~~~~~~d----v-~~~C~~~~~aL~~ 122 (347)
T PRK04262 52 ATIAVEAARNALKRAGIDPKEIGAVYV-GSESHPYAVKPTATIVAEALGAT---PDLTAAD----L-EFACKAGTAALQA 122 (347)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EecCCCcccccHHHHHHHHcCCC---CCceEEE----H-HHhHHHHHHHHHH
Confidence 456678999999999999999999864 33333211 11112222222211 0122111 1 2356777788888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 123 A~~~i~sg~ 131 (347)
T PRK04262 123 AMGLVKSGM 131 (347)
T ss_pred HHHHHHcCC
Confidence 888887654
|
|
| >TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative | Back alignment and domain information |
|---|
Probab=82.83 E-value=4.9 Score=34.66 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.+.. ++.++... +.-+.-+...++-.. . .+... + ...+++++..+..
T Consensus 51 ~~la~~Aa~~aL~~agl~~~dID~li~-~s~~~~~~~p~~a~~v~~~LGl~~-~--~~~~d----v-~~aC~g~~~al~~ 121 (345)
T TIGR00748 51 ATIGVEAARNALKRAKIDPKDIGAVYV-GSESHPYAVKPTATIVAEAIGATP-D--LTAAD----L-EFACKAGTAGIQA 121 (345)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EecCCCccccchHHHHHHHcCCCC-C--ceEEE----H-HHhHHHHHHHHHH
Confidence 456678999999999999999999875 34333211 112222333333210 0 11111 1 1234446777777
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 122 A~~~i~sg~ 130 (345)
T TIGR00748 122 CMGLVASGM 130 (345)
T ss_pred HHHHHHcCC
Confidence 777777764
|
Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound. |
| >PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III | Back alignment and domain information |
|---|
Probab=82.59 E-value=4.5 Score=35.34 Aligned_cols=78 Identities=19% Similarity=0.103 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.+...++++++|+++|++++|||++... +.+...-..-...+...++-. ..+...+. ..+++++..|..+
T Consensus 97 ~~La~~Aa~~aL~~agi~~~dId~li~~-s~~~~~~~~~a~~v~~~LG~~----~~~~~dv~-----~~Ca~~~~aL~~A 166 (379)
T PLN02326 97 TSLAVEAAKKALEMAGVDPEDVDLVLLC-TSSPDDLFGSAPQVQAALGCT----NALAFDLT-----AACSGFVLGLVTA 166 (379)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCccCcHHHHHHHHhCCC----CCceeecc-----ccchHHHHHHHHH
Confidence 3456789999999999999999987653 222211111122233434321 12322222 2467777777777
Q ss_pred HHHHhhCC
Q 040515 192 VLTIHHGV 199 (251)
Q Consensus 192 ~~~l~~~~ 199 (251)
...++.+.
T Consensus 167 ~~~l~~g~ 174 (379)
T PLN02326 167 ARFIRGGG 174 (379)
T ss_pred HHHHHcCC
Confidence 77777664
|
|
| >PRK07850 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.48 E-value=9.4 Score=33.54 Aligned_cols=79 Identities=10% Similarity=0.098 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH--h-hccCCCCceeeecccCCccchhhhhhHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV--F-SDHATSGSLAFSSTKGAIGHLLGAAGAVEA 188 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~--~-~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l 188 (251)
.+-...+++++|+++|++|+|||.+..--.. ..+.. ...+.+. + .... ..+|...+ +..++||+..+
T Consensus 27 ~eL~~~a~~~aL~~agi~~~~Id~v~~G~~~-~~~~q--~~~~ar~~~l~~Gl~--~~~p~~tV-----~~~CaSG~~A~ 96 (387)
T PRK07850 27 AELLGAVQRAVLDRAGIDPGDVEQVIGGCVT-QAGEQ--SNNITRTAWLHAGLP--YHVGATTI-----DCQCGSAQQAN 96 (387)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEecc-ccccc--cchHHHHHHHhCCCC--CCCceEEE-----ecccccHHHHH
Confidence 3445788999999999999999987764221 11110 0001111 1 1110 01333333 45589999999
Q ss_pred HHHHHHHhhCCc
Q 040515 189 IFAVLTIHHGVA 200 (251)
Q Consensus 189 ~~~~~~l~~~~i 200 (251)
..++..++.|..
T Consensus 97 ~~A~~~I~sG~~ 108 (387)
T PRK07850 97 HLVAGLIAAGAI 108 (387)
T ss_pred HHHHHHHHCCCC
Confidence 999999998765
|
|
| >cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine | Back alignment and domain information |
|---|
Probab=82.37 E-value=5.9 Score=34.87 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HH-HHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TV-EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~-E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.+....+++++|++++|+|+|||.|... +...... .. -..++....+.. ..|...+ ...++||+..+.
T Consensus 24 ~el~~~a~~~Al~~agl~p~dID~vi~g-~~~~~~~g~~~~~~~~~~~lg~~----~~p~~~V-----~~~Casg~~al~ 93 (393)
T cd00826 24 HEAGAKAIAAALEPAGVAAGAVEEACLG-QVLGAGEGQNCAQQAAMHAGGLQ----EAPAIGM-----NNLCGSGLRALA 93 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-EccCCcccCcHHHHHHHHcCCCC----CCcEEEe-----cchhHHHHHHHH
Confidence 4566788999999999999999987653 2221110 11 111122211211 1333333 346789999999
Q ss_pred HHHHHHhhCCc
Q 040515 190 FAVLTIHHGVA 200 (251)
Q Consensus 190 ~~~~~l~~~~i 200 (251)
.+...++.|..
T Consensus 94 ~A~~~I~sG~~ 104 (393)
T cd00826 94 LAMQLIAGGDA 104 (393)
T ss_pred HHHHHHHCCCC
Confidence 99999988754
|
There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways. |
| >TIGR02446 FadI fatty oxidation complex, beta subunit FadI | Back alignment and domain information |
|---|
Probab=81.81 E-value=10 Score=33.81 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=56.5
Q ss_pred EEEeeeeecCCCCCC-CCCCCC-hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH--h-hccCCCC
Q 040515 91 AEVRGYGMSGDAHHI-TQPHID-GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV--F-SDHATSG 165 (251)
Q Consensus 91 a~i~g~~~~~~~~~~-~~~~~~-~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~--~-~~~~~~~ 165 (251)
++|.|.+..--+... ...+.. .+-...+++++|++++|+++|||.+..--. ...+.. ..+.+. + ... ..
T Consensus 9 V~Ivg~~rTpfgk~~g~~~~~~~~~L~~~a~~~al~~agl~~~~Id~vi~G~~-~~~~~~---~~~ar~~~l~aGl--~~ 82 (430)
T TIGR02446 9 IAIVAGLRTPFARQATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQV-VQMPEA---PNIAREIVLGTGM--NV 82 (430)
T ss_pred EEEEecccCccccCCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEec-cCcCcc---chHHHHHHHhCCC--CC
Confidence 456666655444321 111222 345578999999999999999998766311 111110 111111 1 111 01
Q ss_pred ceeeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 166 ~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
.+|...+ +..++||+..+..++.+++.|..
T Consensus 83 ~~p~~~V-----~~~CaSG~~A~~~a~~~I~sG~~ 112 (430)
T TIGR02446 83 HTDAYSV-----TRACATSFQSAVNVAESIMAGAI 112 (430)
T ss_pred CCchhhh-----hhhhhHHHHHHHHHHHHHHCCCC
Confidence 1344333 45589999999999999997753
|
This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli. |
| >PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed | Back alignment and domain information |
|---|
Probab=81.72 E-value=6.8 Score=34.06 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
.....+++++|+++|++++|||.+... +.++. ..+.-+..+...++-. .+...+ ...+++|+..+..+
T Consensus 97 ~la~~Aa~~aL~~agl~~~~Id~li~~-~~~~~~~~p~~a~~v~~~Lgl~-----~~~~~v-----~~aCasg~~al~~A 165 (372)
T PRK07515 97 EMGVAAARQALARAGRTAEDIDAVIVA-CSNMQRAYPAMAIEIQQALGIE-----GFAFDM-----NVACSSATFGIQTA 165 (372)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCCcHHHHHHHHhcCCC-----CcEEEe-----cchhHHHHHHHHHH
Confidence 345678999999999999999987653 33321 1111122233333321 122111 23578888888888
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
...++.|..
T Consensus 166 ~~~i~~g~~ 174 (372)
T PRK07515 166 ANAIRSGSA 174 (372)
T ss_pred HHHHHcCCC
Confidence 888887653
|
|
| >PLN03172 chalcone synthase family protein; Provisional | Back alignment and domain information |
|---|
Probab=81.38 E-value=7.1 Score=34.37 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCCCccEEE-ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccC-CccchhhhhhHHHHHHHH
Q 040515 115 AILAMTRALKQSGLQSHQVDYVN-AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKG-AIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 115 ~~~a~~~al~~Agi~~~dId~i~-~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~-~~Gh~~~AsG~~~l~~~~ 192 (251)
-.+++++||+++|++++|||+|. +..|+.. -+.-..-+...++-... ++. ...+..+++++..|-.+.
T Consensus 106 a~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~--~P~~a~~l~~~LGl~~~--------~~~~~~~~~gC~g~~~aL~~A~ 175 (393)
T PLN03172 106 GKEAAAKAIKEWGQPKSKITHLVFCTTSGVD--MPGADYQLTKLLGLKPS--------VKRFMMYQQGCFAGGTVLRLAK 175 (393)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEccCCCc--CchHHHHHHHHhCCCCC--------ceEEeeeCCchHHHHHHHHHHH
Confidence 35788999999999999999875 4434421 22222223333332110 111 122345566666776666
Q ss_pred HHHhhC
Q 040515 193 LTIHHG 198 (251)
Q Consensus 193 ~~l~~~ 198 (251)
..++.+
T Consensus 176 ~~~~~~ 181 (393)
T PLN03172 176 DLAENN 181 (393)
T ss_pred HHHHcC
Confidence 666654
|
|
| >COG0332 FabH 3-oxoacyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=81.34 E-value=1 Score=38.33 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEec
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAH 139 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h 139 (251)
...-.++.++||++||++|+|||+|..-
T Consensus 53 s~la~~Aa~~AL~~Agi~~~dIDlII~a 80 (323)
T COG0332 53 SDLAVEAARKALEDAGISPDDIDLIIVA 80 (323)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 3456789999999999999999998875
|
|
| >cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes | Back alignment and domain information |
|---|
Probab=81.01 E-value=7.5 Score=32.84 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.+..- +.+... .+.-..-+...++-. ..+...+ +..+++|+..+..
T Consensus 49 ~~l~~~a~~~aL~~ag~~~~~Id~li~~-~~~~~~~~~~~~~~i~~~lg~~----~~~~~~v-----~~~C~s~~~al~~ 118 (324)
T cd00827 49 PTMAVEAARRALERAGIDPDDIGLLIVA-TESPIDKGKSAATYLAELLGLT----NAEAFDL-----KQACYGGTAALQL 118 (324)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-cCCCCCCCccHHHHHHHHcCCC----CCceeeh-----hhhhHHHHHHHHH
Confidence 4566789999999999999999998752 322221 111122233333221 1121111 1345677888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 119 A~~~i~~g~ 127 (324)
T cd00827 119 AANLVESGP 127 (324)
T ss_pred HHHHHHcCC
Confidence 888887765
|
They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. |
| >PLN00415 3-ketoacyl-CoA synthase | Back alignment and domain information |
|---|
Probab=80.93 E-value=8.4 Score=34.62 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHH
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~ 193 (251)
.+..+.+++|+++|++|+|||++....++... -+.-...+...++-+..-.... ++....++|+.++-.+-.
T Consensus 137 ~i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~-~Pslaa~l~~~LGLr~~v~~~d-------L~gmGCsggv~aL~lA~~ 208 (466)
T PLN00415 137 VIFGALNSLFKKTGIEPREVGIFIVNCSLFNP-NPSLSSMIVNRYKLKTDVKTYN-------LSGMGCSAGAISVDLATN 208 (466)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCC-CchHHHHHHHHhCCCCCceEEE-------eccccchHHHHHHHHHHH
Confidence 45567889999999999999998776554311 2333333444443221101122 223345566666666666
Q ss_pred HHhhC
Q 040515 194 TIHHG 198 (251)
Q Consensus 194 ~l~~~ 198 (251)
.++.+
T Consensus 209 ll~a~ 213 (466)
T PLN00415 209 LLKAN 213 (466)
T ss_pred HHHhC
Confidence 66553
|
|
| >PRK07108 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=6 Score=34.82 Aligned_cols=81 Identities=12% Similarity=0.026 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEec-CCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAH-ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h-~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+-...+++++|+++|++++|||.|..- .......-..-+..+....+- ...+|...+ +..++||+..+..
T Consensus 28 ~dL~~~A~~~aL~~agi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl---~~~~p~~~V-----~~aCaSg~~Al~~ 99 (392)
T PRK07108 28 ATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGATGANIARQIALRAGL---PVTVPGMTV-----NRFCSSGLQTIAL 99 (392)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCcEEEEEeecccccccHHHHHHHHHcCC---CCCCceeee-----cchhhHHHHHHHH
Confidence 3456789999999999999999987653 221111001111111111111 011333333 4558999999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+..+++.|..
T Consensus 100 A~~~I~sG~~ 109 (392)
T PRK07108 100 AAQRVIAGEG 109 (392)
T ss_pred HHHHHHCCCC
Confidence 9999998764
|
|
| >cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism | Back alignment and domain information |
|---|
Probab=80.67 E-value=7.2 Score=33.88 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.+... +..... ......-+...++-. +.+...+ ...+++|+..+..
T Consensus 17 ~eL~~~A~~~Al~dagl~~~~Id~vi~g-~~~~~~~~~~~a~~va~~lGl~----~~~~~~v-----~~~c~sg~~al~~ 86 (375)
T cd00829 17 LELAAEAARAALDDAGLEPADIDAVVVG-NAAGGRFQSFPGALIAEYLGLL----GKPATRV-----EAAGASGSAAVRA 86 (375)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEe-cccccccccchHHHHHHHcCCC----CcceeeE-----eCccHHHHHHHHH
Confidence 3456788999999999999999988753 221111 011112122222211 1222211 3457888888999
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 87 Aa~~I~sG~ 95 (375)
T cd00829 87 AAAAIASGL 95 (375)
T ss_pred HHHHHHhCC
Confidence 998888874
|
The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein. |
| >PRK06840 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=80.46 E-value=8 Score=33.07 Aligned_cols=76 Identities=18% Similarity=0.034 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc--CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP--LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~--~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.+...++++++|+++|++|+|||++....+.++ .... -..-+...++-.. .+...+ .+ .+++++..+.
T Consensus 54 ~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~-~a~~l~~~lGl~~----~~~~~v----~~-~C~~~~~al~ 123 (339)
T PRK06840 54 SDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWS-SAPKIQHEIGAKN----AWAFDI----MA-VCASFPIALK 123 (339)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCc-hHHHHHHHhCCCC----cccccc----cc-cchHHHHHHH
Confidence 456678999999999999999999864322111 1111 1222333333211 222211 22 3566777777
Q ss_pred HHHHHHhh
Q 040515 190 FAVLTIHH 197 (251)
Q Consensus 190 ~~~~~l~~ 197 (251)
.+...++.
T Consensus 124 ~A~~~l~~ 131 (339)
T PRK06840 124 VAKDLLYS 131 (339)
T ss_pred HHHHHHhc
Confidence 77777765
|
|
| >PRK06064 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.41 E-value=9.7 Score=33.38 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc--C-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP--L-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEA 188 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~--~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l 188 (251)
.+...++++++|+++|++++|||.+... +..+ . ....-..-+...++-. ..+...+ ...+++|+..+
T Consensus 23 ~eLa~~a~~~Al~dagl~~~~Id~vi~g-~~~~~~~~~~~~~a~~va~~lGl~----~~~~~~v-----~~aCasg~~ai 92 (389)
T PRK06064 23 RDLAVEAGLEALEDAGIDGKDIDAMYVG-NMSAGLFVSQEHIAALIADYAGLA----PIPATRV-----EAACASGGAAL 92 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-ecccccccccccHHHHHHHHcCCC----CCCeeEE-----eCCcHHHHHHH
Confidence 3456788999999999999999988753 2211 1 0111111112222211 0122211 23477888888
Q ss_pred HHHHHHHhhCCc
Q 040515 189 IFAVLTIHHGVA 200 (251)
Q Consensus 189 ~~~~~~l~~~~i 200 (251)
..+...++.|..
T Consensus 93 ~~A~~~I~sG~~ 104 (389)
T PRK06064 93 RQAYLAVASGEA 104 (389)
T ss_pred HHHHHHHHCCCC
Confidence 889888887764
|
|
| >PRK06633 acetyl-CoA acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.33 E-value=6 Score=34.83 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEec-CCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAH-ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h-~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
+-...+++++|+++||+++|||.+..- ......+...-..+. ..... ...+|...+ +..++||+..+..+
T Consensus 29 ~L~~~a~~~al~~agi~~~~Id~vv~G~~~~~~~g~~~~r~~~--~~~Gl--~~~~p~~~V-----~~~CaSG~~Ai~~A 99 (392)
T PRK06633 29 MLAAHLIKDILQNSKIDPALVNEVILGQVITGGSGQNPARQTL--IHAGI--PKEVPGYTI-----NKVCGSGLKSVALA 99 (392)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEEEEecCccccccHHHHHHH--HHCCC--CCCccchhh-----cchhHHHHHHHHHH
Confidence 455788999999999999999987763 222111221111111 11111 112454444 34689999999999
Q ss_pred HHHHhhCCc
Q 040515 192 VLTIHHGVA 200 (251)
Q Consensus 192 ~~~l~~~~i 200 (251)
...++.|..
T Consensus 100 ~~~I~sG~~ 108 (392)
T PRK06633 100 ANSIMTGDN 108 (392)
T ss_pred HHHHHcCCC
Confidence 999987764
|
|
| >PF09663 Amido_AtzD_TrzD: Amidohydrolase ring-opening protein (Amido_AtzD_TrzD); InterPro: IPR014086 Members of this family are ring-opening amidohydrolases, including cyanuric acid amidohydrolase (3 | Back alignment and domain information |
|---|
Probab=80.09 E-value=3.8 Score=34.84 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCC-CCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGL-QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi-~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
...+.++++++++||| +|+||-||..-..=-.. ..+... ..++..+.....-..++..-||| .++++.+
T Consensus 132 ~~vA~aV~~aM~~AGI~dpaDVH~VQvKcPLLT~------~~i~~A---~~RG~~~~t~dt~~SM~~SrgAS-ALGvAvA 201 (365)
T PF09663_consen 132 EEVAAAVRAAMADAGITDPADVHFVQVKCPLLTS------ERIADA---KARGKTVATEDTYESMAYSRGAS-ALGVAVA 201 (365)
T ss_pred HHHHHHHHHHHHHcCCCChhheeeEEecCCcCCH------HHHHHH---HhCCCceeecccccccccccchh-HHHHHHH
Confidence 4567889999999999 79999999998432211 112221 12222244444455788888888 5566666
Q ss_pred H
Q 040515 192 V 192 (251)
Q Consensus 192 ~ 192 (251)
+
T Consensus 202 L 202 (365)
T PF09663_consen 202 L 202 (365)
T ss_pred h
Confidence 4
|
5.2.15 from EC) (AtzD and TrzD) and barbiturase. Note that barbiturase does not act as defined for 3.5.2.1 from EC (barbiturate + water = malonate + urea) but rather catalyses the ring opening of barbiturase acid to ureidomalonic acid [].; GO: 0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 251 | ||||
| 1w0i_A | 431 | Arabidopsis Thaliana Mitochondrial Kas Length = 431 | 1e-108 | ||
| 1j3n_A | 408 | Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protei | 7e-66 | ||
| 3e60_A | 424 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 6e-63 | ||
| 2iwy_A | 438 | Human Mitochondrial Beta-ketoacyl Acp Synthase Leng | 2e-62 | ||
| 3kzu_A | 428 | Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protei | 5e-62 | ||
| 2c9h_A | 444 | Structure Of Mitochondrial Beta-Ketoacyl Synthase L | 3e-61 | ||
| 4ddo_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 4e-56 | ||
| 1e5m_A | 416 | Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kas | 6e-56 | ||
| 2gfw_A | 427 | Structure Of Wild Type E. Coli Fabf (Kasii) Length | 3e-55 | ||
| 1b3n_A | 412 | Beta-Ketoacyl Carrier Protein Synthase As A Drug Ta | 4e-55 | ||
| 4f32_A | 451 | Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protei | 8e-55 | ||
| 2gfy_A | 427 | Structure Of E. Coli Fabf(K335a) Mutant With Covale | 2e-54 | ||
| 3hnz_A | 427 | Structure Of E. Coli Fabf(C163a) In Complex With Pl | 5e-54 | ||
| 2gfv_A | 427 | Structure Of E. Coli Fabf (Kasii) C163q Mutant Leng | 1e-53 | ||
| 2gqd_A | 437 | The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii | 3e-53 | ||
| 3o04_A | 413 | Crystal Structure Of The Beta-Keto-Acyl Carrier Pro | 6e-52 | ||
| 2wgd_A | 416 | Crystal Structure Of Kasa Of Mycobacterium Tubercul | 9e-44 | ||
| 2wgf_A | 416 | Crystal Structure Of Mycobacterium Tuberculosis C17 | 2e-42 | ||
| 1fj4_A | 406 | The Structure Of Beta-Ketoacyl-[acyl Carrier Protei | 7e-42 | ||
| 1dd8_A | 406 | Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Pr | 7e-42 | ||
| 1h4f_A | 406 | E. Coli Beta-Ketoacyl [acyl Carrier Protein] Syntha | 1e-41 | ||
| 1ox0_A | 430 | The Crystal Structure Of Beta-Ketoacyl-[acyl Carrie | 4e-41 | ||
| 2byw_A | 418 | Structure Of Escherichia Coli Beta-Ketoacyl (Acyl C | 4e-41 | ||
| 2byz_A | 418 | Structure Of E. Coli Kas I H298q Mutant In Complex | 4e-41 | ||
| 2byy_A | 418 | E. Coli Kas I H298e Mutation Length = 418 | 4e-41 | ||
| 2rjt_A | 428 | Crystal Structure Analysis Of A Surface Entropy Red | 6e-41 | ||
| 3u0f_A | 411 | The Structure Of Beta-Ketoacyl Synthase From Brucel | 2e-40 | ||
| 3lrf_A | 428 | Crystal Structure Of Beta-Ketoacyl Synthase From Br | 2e-40 | ||
| 2alm_A | 431 | Crystal Structure Analysis Of A Mutant Beta-Ketoacy | 3e-40 | ||
| 1f91_A | 406 | Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In | 2e-38 | ||
| 1ek4_A | 418 | Beta-Ketoacyl [acyl Carrier Protein] Synthase I In | 2e-38 | ||
| 2vb7_C | 406 | Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Ap | 2e-38 | ||
| 3oyt_A | 410 | 1.84 Angstrom Resolution Crystal Structure Of 3-Oxo | 4e-38 | ||
| 2gp6_A | 434 | X-Ray Crystal Structure Of Mycobacterium Tuberculos | 3e-36 | ||
| 1tqy_A | 424 | The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Le | 7e-32 | ||
| 4ewg_A | 412 | Crystal Structure Of A Beta-Ketoacyl Synthase From | 2e-27 | ||
| 2qo3_A | 915 | Crystal Structure Of [ks3][at3] Didomain From Modul | 2e-12 | ||
| 2hg4_A | 917 | Structure Of The Ketosynthase-acyltransferase Didom | 5e-12 | ||
| 2vz8_A | 2512 | Crystal Structure Of Mammalian Fatty Acid Synthase | 3e-07 | ||
| 3hhd_A | 965 | Structure Of The Human Fatty Acid Synthase Ks-Mat D | 3e-07 | ||
| 3zen_D | 3089 | Cryo-em Structure Of The Mycobacterial Fatty Acid S | 9e-04 |
| >pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas Length = 431 | Back alignment and structure |
|
| >pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein) Synthase Ii From Thermus Thermophilus Hb8 Length = 408 | Back alignment and structure |
|
| >pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Bartonella Henselae Length = 424 | Back alignment and structure |
|
| >pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase Length = 438 | Back alignment and structure |
|
| >pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase Ii From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase Length = 444 | Back alignment and structure |
|
| >pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis Length = 451 | Back alignment and structure |
|
| >pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii) From Synechocystis Sp Length = 416 | Back alignment and structure |
|
| >pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii) Length = 427 | Back alignment and structure |
|
| >pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target, Implications From The Crystal Structure Of A Complex With The Inhibitor Cerulenin. Length = 412 | Back alignment and structure |
|
| >pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Synthase Ii From Burkholderia Vietnamiensis In Complex With Platencin Length = 451 | Back alignment and structure |
|
| >pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently Linked Dodecanoic Acid Length = 427 | Back alignment and structure |
|
| >pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With Platensimycin Length = 427 | Back alignment and structure |
|
| >pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant Length = 427 | Back alignment and structure |
|
| >pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf) From Staphylococcus Aureus Length = 437 | Back alignment and structure |
|
| >pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein Synthase Ii (Lmo2201) From Listeria Monocytogenes Length = 413 | Back alignment and structure |
|
| >pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis Length = 416 | Back alignment and structure |
|
| >pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa Variant Length = 416 | Back alignment and structure |
|
| >pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I In Complex With Thiolactomycin, Implications For Drug Design Length = 406 | Back alignment and structure |
|
| >pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase I From Escherichia Coli Length = 406 | Back alignment and structure |
|
| >pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I K328r Length = 406 | Back alignment and structure |
|
| >pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 430 | Back alignment and structure |
|
| >pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I Lys328ala Mutant Length = 418 | Back alignment and structure |
|
| >pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With C12 Fatty Acid Length = 418 | Back alignment and structure |
|
| >pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation Length = 418 | Back alignment and structure |
|
| >pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction Mutant Of S. Pneumoniae Fabf Length = 428 | Back alignment and structure |
|
| >pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Bound To The Fragment 7-Hydroxycoumarin Length = 411 | Back alignment and structure |
|
| >pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella Melitensis Length = 428 | Back alignment and structure |
|
| >pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl Carrier Protein] Synthase Ii From Streptococcus Pneumoniae Length = 431 | Back alignment and structure |
|
| >pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex With C10 Fatty Acid Substrate Length = 406 | Back alignment and structure |
|
| >pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex With Dodecanoic Acid To 1.85 Resolution Length = 418 | Back alignment and structure |
|
| >pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo Structure After Soak In Peg Solution Length = 406 | Back alignment and structure |
|
| >pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis Co92 Length = 410 | Back alignment and structure |
|
| >pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb) Length = 434 | Back alignment and structure |
|
| >pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR Length = 424 | Back alignment and structure |
|
| >pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From Burkholderia Phymatum Stm815 Length = 412 | Back alignment and structure |
|
| >pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of 6- Deoxyerthronolide B Synthase Length = 915 | Back alignment and structure |
|
| >pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of Module 5 From Debs. Length = 917 | Back alignment and structure |
|
| >pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512 | Back alignment and structure |
|
| >pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965 | Back alignment and structure |
|
| >pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase Length = 3089 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A Length = 431 | Back alignment and structure |
|---|
Score = 424 bits (1093), Expect = e-150
Identities = 201/261 (77%), Positives = 224/261 (85%), Gaps = 12/261 (4%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N
Sbjct: 170 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFN 229
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+PQEASRPFDC RDGF E EHAK+RGAKIYAE+ GYGMSGDAHHITQP
Sbjct: 230 SSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQP 289
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DGKGA+LAMTRAL+QSGL +Q+DYVNAHATSTP+GD VEA AI+TVFS+HATSG+LA
Sbjct: 290 PEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLA 349
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
FSSTKGA GHLLGAAGAVEAIF++L IHHGVAP+TLN+ PDPIF+ FMPLT SK M +
Sbjct: 350 FSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLV 409
Query: 229 SAALSNSFGFGGTNASLLFTK 249
A+SNSFGFGGTNASLLF
Sbjct: 410 RTAMSNSFGFGGTNASLLFAS 430
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A Length = 428 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-143
Identities = 141/261 (54%), Positives = 174/261 (66%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNH+ VTACATG H+IGDAAR+I FGD+DVMVAGGTES + +S+AGF +AL+T+ N
Sbjct: 169 GPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERN 228
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRP+D RDGF ELEHA RGAKIYAEV GYGMSGDA HIT P
Sbjct: 229 DDPTAASRPYDEDRDGFVMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAP 288
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA M ALK++G+ ++DY+NAH TST DT+E A+ V + A ++
Sbjct: 289 TESGEGAQRCMVAALKRAGIVPDEIDYINAHGTSTM-ADTIELGAVERVVGEAAA--KIS 345
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK +IGHLLGAAGA EA+F+ L I +AP TLNL P + +P ++ I
Sbjct: 346 MSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKP-RERKI 404
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSNSFGFGGTNASL+ +
Sbjct: 405 DVALSNSFGFGGTNASLVLRR 425
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* Length = 451 | Back alignment and structure |
|---|
Score = 407 bits (1049), Expect = e-143
Identities = 129/262 (49%), Positives = 167/262 (63%), Gaps = 17/262 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP VTACA +IGDA RMI+ G++DV++AGG E++ D +S+ GF +RAL+T ++
Sbjct: 184 GPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFS 243
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRPFD RDGF L+HA RGA+ AE+ GYG + DA+H+T
Sbjct: 244 EEPVRASRPFDRDRDGFVMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAG 303
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG GA+ AM AL+ + QVDYVNAHATSTP+GD E A++TVF A A
Sbjct: 304 PDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDAGEIEALKTVFGVGA---GPA 360
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMP 227
SSTK A GHLLGAAGA+EA F++L + GV P TLNL PDP + + + A + +P
Sbjct: 361 ISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIGPAA-RHVP 419
Query: 228 ISAALSNSFGFGGTNASLLFTK 249
+ ALSN FGFGG NAS+LF +
Sbjct: 420 VEIALSNGFGFGGVNASVLFRR 441
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A Length = 438 | Back alignment and structure |
|---|
Score = 403 bits (1037), Expect = e-141
Identities = 142/264 (53%), Positives = 176/264 (66%), Gaps = 20/264 (7%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHA TAC TGAH++GD+ R I GD+DVMVAGGT+S I LS+AGF ++RAL+T N
Sbjct: 179 GPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALST--N 236
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPF RDGF E EHA +R A+IYAEV GYG+SGDA HIT P
Sbjct: 237 SDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAP 296
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA+ M ALK +G+Q ++ Y+NAHATSTPLGD E AI+ +F DHA +LA
Sbjct: 297 DPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDAAENKAIKHLFKDHAY--ALA 354
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTKGA GHLLGAAGAVEA F L ++ P TLNL +P F+ N++PL A ++
Sbjct: 355 VSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVPLKA-QEWKT 413
Query: 229 SA---ALSNSFGFGGTNASLLFTK 249
L+NSFGFGGTNA+L
Sbjct: 414 EKRFIGLTNSFGFGGTNATLCIAG 437
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} Length = 434 | Back alignment and structure |
|---|
Score = 394 bits (1015), Expect = e-138
Identities = 97/261 (37%), Positives = 139/261 (53%), Gaps = 17/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
V+ACA+GA +I A + I G++D + GG E+ I+A+ +AGF + R + + N
Sbjct: 178 AGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTNN 237
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P A RPFD RDGF EHAK RGA I A + G ++ D H+ P
Sbjct: 238 DDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAP 297
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+ A A+TRA++ +GL +D+VNAHAT T +GD E AI + A
Sbjct: 298 DPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGNR----PA 353
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
+ K A+GH +GA GAVE+I VL + V P TLNL DP + + + +
Sbjct: 354 VYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEP-RPGNY 412
Query: 229 SAALSNSFGFGGTNASLLFTK 249
A++NSFGFGG N ++ F +
Sbjct: 413 RYAINNSFGFGGHNVAIAFGR 433
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* Length = 416 | Back alignment and structure |
|---|
Score = 393 bits (1013), Expect = e-138
Identities = 111/261 (42%), Positives = 149/261 (57%), Gaps = 19/261 (7%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
V+AC++G+ +I A R I GD+DV V GG E I+AL +A F RA++T+ N
Sbjct: 162 AGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-N 220
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRPFD RDGF EHAK RGAK A + G G++ DA H+ P
Sbjct: 221 DEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAP 280
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG A AMTR+L+ +GL +D+VNAH T+TP+GD EA AIR D A A
Sbjct: 281 AADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANAIRVAGCDQA-----A 335
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
+ K A+GH +GA GA+E++ VLT+ GV P TLN PDP + + + +
Sbjct: 336 VYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEP-RYGDY 394
Query: 229 SAALSNSFGFGGTNASLLFTK 249
A++NSFGFGG N +L F +
Sbjct: 395 RYAVNNSFGFGGHNVALAFGR 415
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A Length = 427 | Back alignment and structure |
|---|
Score = 386 bits (993), Expect = e-135
Identities = 131/261 (50%), Positives = 173/261 (66%), Gaps = 15/261 (5%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TA +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 169 GPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 227
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
PQ ASRP+D RDGF E EHAKKRGAKIYAE+ G+GMS DA+H+T P
Sbjct: 228 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSP 287
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD EA A++T+F + A+ +
Sbjct: 288 PENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RVL 345
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAGAVE+I+++L + P T+NL PD + +F+P A + +
Sbjct: 346 VSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGM 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
L NSFGFGGTN SL+F K
Sbjct: 406 EYTLCNSFGFGGTNGSLIFKK 426
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 383 bits (987), Expect = e-134
Identities = 125/261 (47%), Positives = 163/261 (62%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN+ VTACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ + N
Sbjct: 158 GPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-N 216
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P ASRPFD RDGF ELE A RGAKIY E+ GY M+ DA+HIT P
Sbjct: 217 DDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAP 276
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+GA A+ ALK SGL+ V Y+NAH TSTP D E AI+ +HA ++A
Sbjct: 277 VPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAY--NIA 334
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLG +G +EA+ V+ I P T+NL PDP + +++P + + + +
Sbjct: 335 VSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVPGQS-RALIV 393
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSNSFGFGG N +L F K
Sbjct: 394 DVALSNSFGFGGHNVTLAFKK 414
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A Length = 430 | Back alignment and structure |
|---|
Score = 384 bits (988), Expect = e-134
Identities = 113/261 (43%), Positives = 148/261 (56%), Gaps = 20/261 (7%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G + TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T
Sbjct: 174 GVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--T 231
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P AS PFD R+GF LEHA+KRGA I AEV GYG + DA+H+T P
Sbjct: 232 EDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSP 291
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
H +G+GAI A+ AL+++ + QV YVNAH TSTP + E+ AI V +
Sbjct: 292 HPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKE-----VP 346
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGAAGAVEAI + + H P+T ++ N + + I
Sbjct: 347 VSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQG-LEKEI 405
Query: 229 SAALSNSFGFGGTNASLLFTK 249
A+SN+FGFGG NA L F +
Sbjct: 406 PYAISNTFGFGGHNAVLAFKR 426
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} Length = 413 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-134
Identities = 126/261 (48%), Positives = 169/261 (64%), Gaps = 17/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N VTACAT +SIGDA ++I+ GD+D M+ GG E+ I +S+AGF ++AL+ N
Sbjct: 155 GINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL--N 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ A RPFD RDGF E EHAK RGAKIYAE+ GYG +GDA+HIT P
Sbjct: 213 PDPETACRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+GA AM A+ +GL +VDY+NAH TSTP D E AI+TVF +HA LA
Sbjct: 273 APNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGEHAK--KLA 330
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GH LGA+G +EAIFA+LTI + T++L D + + +++P A ++ +
Sbjct: 331 ISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEA-REANV 389
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ +SNSFGFGG NA+L+F +
Sbjct: 390 NVVISNSFGFGGHNATLVFKR 410
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 408 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-134
Identities = 140/261 (53%), Positives = 177/261 (67%), Gaps = 17/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ VTACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N
Sbjct: 152 GPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-N 210
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P++ASRPF RDGF EHAKKRGA+IYAE+ G+G S DAHHIT+P
Sbjct: 211 EEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEP 270
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
H +GKGA LAM RALK +G+ QV Y+NAH TSTP+GD E AI+ VF DHA L
Sbjct: 271 HPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAK--RLM 328
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK IGHLLGAAGAVEAI V ++HGV P T+NL PDP + +F+P ++ +
Sbjct: 329 VSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP--EPREAKV 386
Query: 229 SAALSNSFGFGGTNASLLFTK 249
ALSNSF FGG NA L F +
Sbjct: 387 DYALSNSFAFGGHNAVLAFKR 407
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} Length = 437 | Back alignment and structure |
|---|
Score = 381 bits (982), Expect = e-133
Identities = 124/261 (47%), Positives = 164/261 (62%), Gaps = 17/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN A VTACATG +SIG+A +++Q GD+D M+ GGTE+ I +++AGF SRAL+T N
Sbjct: 179 GPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--N 236
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
+ A RPF GRDGF LE A+ RGA IYAE+ GYG +GDA+HIT P
Sbjct: 237 DDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAP 296
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
+G+G AM A+ +G++ V Y+NAH TSTP+GD E AI+ F + A L
Sbjct: 297 APEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAK--HLK 354
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SSTK GHLLGA G +EAIF+ L+I T++ PDP + + +P A +D+ I
Sbjct: 355 VSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVPNEA-QDLDI 413
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ A+SNS GFGG NA L+F K
Sbjct: 414 TYAMSNSLGFGGHNAVLVFKK 434
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 424 | Back alignment and structure |
|---|
Score = 375 bits (965), Expect = e-131
Identities = 91/261 (34%), Positives = 136/261 (52%), Gaps = 16/261 (6%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA T + N
Sbjct: 160 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR-N 218
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P+ ASRPFD RDGF + + A RGA+I+AE+ GY +A+H+T
Sbjct: 219 DDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGL 278
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
DG+ + AL +S + +DY+NAH + T D E A + +HA
Sbjct: 279 KADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHAR--RTP 336
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
SS K +GH LGA G++E VL + HGV P T NL DP + +++PL A ++ +
Sbjct: 337 VSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEA-RERKL 395
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ L+ GFGG ++++
Sbjct: 396 RSVLTVGSGFGGFQSAMVLRD 416
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... Length = 406 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-129
Identities = 108/261 (41%), Positives = 146/261 (55%), Gaps = 23/261 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT AH IG+A IQ G D++ AGG E ++ F AL+TKYN
Sbjct: 154 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMAC-EFDAMGALSTKYN 212
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP++ASR +D RDGF ELEHA RGA IYAE+ GYG + D + P
Sbjct: 213 DTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAP 272
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GA+ M A+ +DY+N+H TSTP+GD E AIR VF D + A
Sbjct: 273 --SGEGAVRCMKMAMHGVDT---PIDYLNSHGTSTPVGDVKELAAIREVFGDKS----PA 323
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228
S+TK GH LGAAG EAI+++L + HG ++N+ + D + D +
Sbjct: 324 ISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTET-TDREL 382
Query: 229 SAALSNSFGFGGTNASLLFTK 249
+ +SNSFGFGGTNA+L+ K
Sbjct: 383 TTVMSNSFGFGGTNATLVMRK 403
|
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} Length = 412 | Back alignment and structure |
|---|
Score = 371 bits (955), Expect = e-129
Identities = 93/264 (35%), Positives = 132/264 (50%), Gaps = 23/264 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G +ACA+G+ +IG A I G +M+AGG E ++A F A +T+ N
Sbjct: 159 GRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEELS-GPAVAVFDTLYATSTR-N 216
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
P RPFD RDG E EHAK RGA I+AE+ G+G + D H+TQP
Sbjct: 217 DEPHLTPRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP 276
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
AM AL+ + L ++ + YVNAH TST GD E+ A F + +
Sbjct: 277 --TASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGER-----MP 329
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMP 227
SS K +GH LGA GA+EA + + + TLNL + DP +++ A + +
Sbjct: 330 ISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEA-RAID 388
Query: 228 ISAALSNSFGFGGTNASLLFTKCQ 251
+SN+F FGG N SL+F + +
Sbjct: 389 AEYVMSNNFAFGGINTSLIFRRVR 412
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* Length = 428 | Back alignment and structure |
|---|
Score = 366 bits (943), Expect = e-127
Identities = 105/262 (40%), Positives = 144/262 (54%), Gaps = 22/262 (8%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G N++ +ACAT H IG+A MIQ+G D M AGG E LS+ F A+++KYN
Sbjct: 173 GINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDWTLSV-LFDAMGAMSSKYN 231
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQP 108
TP ASR +D RDGF +LE A RGAKIY E+ GYG + D + + P
Sbjct: 232 DTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP 291
Query: 109 HIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLA 168
G+GAI M AL ++DY+N HATSTP GD E AIR +F
Sbjct: 292 --SGEGAIRCMKMALSTVT---SKIDYINPHATSTPAGDAPEIEAIRQIFGAGDV--CPP 344
Query: 169 FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND-NFMPLTASKDMP 227
++TK GH LGA G EAI+++L + + + ++ + DP F D + ++
Sbjct: 345 IAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFADMPIVRKRI-DNVQ 403
Query: 228 ISAALSNSFGFGGTNASLLFTK 249
++ LSNSFGFGGTNA+L+F +
Sbjct: 404 LNTVLSNSFGFGGTNATLVFQR 425
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 Length = 415 | Back alignment and structure |
|---|
Score = 353 bits (909), Expect = e-122
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 24/262 (9%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ A V A G ++G A R I+ G + ++V+GG +S++D S ++T
Sbjct: 160 GPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST--A 216
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGA-KIYAEVRGYGMSGDAHHITQ 107
P A PFD G+ + A+ RG Y E+ G + D +
Sbjct: 217 TDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSG 276
Query: 108 PHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 167
G A+ AL +G VD V A P D EA AI VF +
Sbjct: 277 R---PAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREG----V 329
Query: 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP 227
+ K G L G ++ + A++++ GV T + + + + +
Sbjct: 330 PVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVLGEP-RSTA 388
Query: 228 ISAALSNSFGFGGTNASLLFTK 249
AL + G G N++ + +
Sbjct: 389 PRTALVLARGRWGFNSAAVLRR 410
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 4e-79
Identities = 51/293 (17%), Positives = 84/293 (28%), Gaps = 53/293 (18%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT--- 57
GP V ACAT S+ I G + + + GG + + F +A +
Sbjct: 1097 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQE-EGSFEFGNMKATSNTLE 1155
Query: 58 --KYNGTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAH 103
++ TP E SRP R+GF + + A K G IY V + D
Sbjct: 1156 EFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKI 1215
Query: 104 HITQPHIDGKGAILAMTRALKQSGLQS------------------------HQVDYVNAH 139
+ P GKG + S ++++ +
Sbjct: 1216 GRSVPA-PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLE 1274
Query: 140 ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199
A P D E RT + + + G+ A +G+
Sbjct: 1275 AEEIPSEDQNEFLLERTREIHNEAESQ--LRAAQQQWGNDFYKRDPRIAPLRGALATYGL 1332
Query: 200 APLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG-FGGTNASLLFTKCQ 251
D T + D SA ++ G + + + Q
Sbjct: 1333 TI-------DDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ 1378
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 5e-60
Identities = 49/259 (18%), Positives = 75/259 (28%), Gaps = 35/259 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAA-------RMIQFGDSDVMVAGGTESSIDALSMAGFCKSR 53
P +T S+ A+ R Q + + E+ ++AL +
Sbjct: 1221 APGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEA----- 1275
Query: 54 ALTTKYNGTPQEASRPFDCGRDGFELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGK 113
P + E +R +I+ E +
Sbjct: 1276 ------------EEIP-----SEDQNEFLLERTREIHNEAESQLRAA-QQQWGNDFYKRD 1317
Query: 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS--GSLAFSS 171
I + AL GL + + H TST D E+ I + S +
Sbjct: 1318 PRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVF 1377
Query: 172 TKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDP---IFNDNFMPLTASKDMPI 228
K GH GAAGA A+ ++ G+ P N D F P K +
Sbjct: 1378 QKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGV 1437
Query: 229 SAALSNSFGFGGTNASLLF 247
A SFGFG +
Sbjct: 1438 RAVSITSFGFGQKGGQAIV 1456
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-65
Identities = 63/362 (17%), Positives = 92/362 (25%), Gaps = 117/362 (32%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT--- 57
GP V ACAT S+ I G + + + GG + + F +A +
Sbjct: 1296 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQE-EGSFEFGNMKATSNTLE 1354
Query: 58 --KYNGTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAH 103
++ TP E SRP R+GF + + A K G IY V + D
Sbjct: 1355 EFEHGRTPAEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKI 1414
Query: 104 HITQPHIDGKGAILAMTRALKQSGLQS------------------------HQVDYVNAH 139
+ P GKG + S ++++ +
Sbjct: 1415 GRSVPA-PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLE 1473
Query: 140 ATSTPLGDTVEATAIRTVF----------------------------------------- 158
A P D E RT
Sbjct: 1474 AEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTI 1533
Query: 159 ------SDHATSGSLAFSSTKGAI----GHLLGAAGAVEAI------------------- 189
S H TS + I HL + G
Sbjct: 1534 DDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMM 1593
Query: 190 -FAVLTIHHGVAPLTLNLAKPDP---IFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 245
A+ ++ G+ P N D F P K + A SFGFG
Sbjct: 1594 NGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQA 1653
Query: 246 LF 247
+
Sbjct: 1654 IV 1655
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 212 bits (540), Expect = 5e-63
Identities = 44/226 (19%), Positives = 68/226 (30%), Gaps = 31/226 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGG-----TESSIDALSMAGFCKSRAL 55
GP V ACAT S+ I G + V + GG E S + +M ++
Sbjct: 1271 GPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEE 1330
Query: 56 TTKYNGTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAH 103
+ P E SRP R+GF + A + G IY V + D
Sbjct: 1331 FAR-GREPGEMSRPTSTTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKI 1389
Query: 104 HITQPHIDGKGAILAMTRALKQSGLQSHQVDY-----------VNAHATSTPLGDTVEAT 152
+ P G+G + + Y + S L E
Sbjct: 1390 GRSVPA-PGQGVLTTAREKSGNFPSPLLDIKYRRRQLELRRQQIKQWKESEYLYLQEEVA 1448
Query: 153 AIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHG 198
AI++ S+ + + H+ A EA +
Sbjct: 1449 AIKSQRSEEDGPFDET-AYLRERTEHIEREARRQEAEAQTSFGNEF 1493
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 6e-44
Identities = 40/181 (22%), Positives = 59/181 (32%), Gaps = 6/181 (3%)
Query: 71 DCGRDGFELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQS 130
+ E + ++R I E R + I + AL GL
Sbjct: 1456 EEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRD-SRIAPLRGALATWGLTI 1514
Query: 131 HQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG--SLAFSSTKGAIGHLLGAAGAVEA 188
+ + H TST D E+ I + ++ K GH GAAGA
Sbjct: 1515 DDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWML 1574
Query: 189 IFAVLTIHHGVAPLTLNLAKPDP---IFNDNFMPLTASKDMPISAALSNSFGFGGTNASL 245
+ ++ G+ P N D F+ P + K I A SFGFG A
Sbjct: 1575 NGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQA 1634
Query: 246 L 246
+
Sbjct: 1635 I 1635
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 3e-27
Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ TAC++ ++ A + I+ G+ V GG + S F K L+
Sbjct: 152 GPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS---- 207
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHH---I 105
R FD G+ + A++ +YA + G + D +
Sbjct: 208 --QDGTCRSFDAEGTGYCRAEAVVAVLLTKKSLARR----VYATILNAGTNTDGSKEQGV 261
Query: 106 TQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSG 165
T P G + +G ++Y+ AH T T +GD E I
Sbjct: 262 TFP--SGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALCATRREP 319
Query: 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDP---IFNDNFMPL-- 220
L STK +GH A+G I +L++ HGV L+ P+P D + +
Sbjct: 320 -LLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVD 378
Query: 221 TASKDMPISAALSNSFGFGGTNA 243
+ ++ SFGFGG+N
Sbjct: 379 RPLPIRGGNVGIN-SFGFGGSNV 400
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} Length = 917 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 2e-23
Identities = 73/266 (27%), Positives = 112/266 (42%), Gaps = 32/266 (12%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP TAC++G ++ A ++ + + +AGG + F L
Sbjct: 190 GPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA---- 245
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHH--IT 106
+PF DGF L A++ G + A +RG ++ D +T
Sbjct: 246 --ADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLT 303
Query: 107 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF-SDHATSG 165
P G + RAL+ +G+++ VDYV AH T T LGD +E A+ + + ++
Sbjct: 304 APS--GPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDD 361
Query: 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN---DNFMPLTA 222
L S K IGH AAG + AVL + HG P TL+ +P P ++
Sbjct: 362 PLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQ 421
Query: 223 SKDMPIS-----AALSNSFGFGGTNA 243
++ P A +S SFG GTNA
Sbjct: 422 ARSWPAGERPRRAGVS-SFGISGTNA 446
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} Length = 915 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 8e-23
Identities = 76/266 (28%), Positives = 116/266 (43%), Gaps = 32/266 (12%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TAC++ ++ A ++ G+S + V GG F + RAL
Sbjct: 168 GPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA---- 223
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGD--AHHIT 106
S+ F G DGF L A++ G ++ A VRG ++ D ++ ++
Sbjct: 224 --ADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLS 281
Query: 107 QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVF-SDHATSG 165
P G + +AL+ GL+ VD V AH T T LGD +EA A+ + D
Sbjct: 282 APS--GPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDPIEANALLDTYGRDRDADR 339
Query: 166 SLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN---DNFMPLTA 222
L S K IGH AAG + VL + +G P TL++ +P P + L
Sbjct: 340 PLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAG 399
Query: 223 SKDMPIS-----AALSNSFGFGGTNA 243
++ AA+S +FG GTNA
Sbjct: 400 NQPWRRGERTRRAAVS-AFGISGTNA 424
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A Length = 965 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-16
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 121 RALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLL 180
+ +G+ +Y+ AH T T +GD E I L STK +GH
Sbjct: 277 SLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCATRQEP-LLIGSTKSNMGHPE 335
Query: 181 GAAGAVEAIFAVLTIHHGVAPLTLNLAKPDP---IFNDNFMPL--TASKDMPISAALSNS 235
A+G +L++ HG+ L+ P+P D + + + ++ S
Sbjct: 336 PASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQPLPVRGGNVGIN-S 394
Query: 236 FGFGGTNA 243
FGFGG+N
Sbjct: 395 FGFGGSNV 402
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ AAR I G+ V + G ES
Sbjct: 89 CGSGLEAVAQAARAIWAGEGKVYIGSGVES 118
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* Length = 390 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 5e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C + ++ AA+ I G+ DV V GG E
Sbjct: 94 CGSSMSALHTAAQAIMTGNGDVFVVGGVEH 123
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} Length = 387 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C + ++ DAARMI GD+ V + GG E
Sbjct: 91 CGSSMQALHDAARMIMTGDAQVCLVGGVEH 120
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A Length = 393 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C++G ++ D A I+ G D+ +A G ES
Sbjct: 101 CSSGLTAVNDIANKIKVGQIDIGLALGVES 130
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} Length = 394 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 4e-05
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C++G +I AA IQ G S+V+VAGG E+
Sbjct: 91 CSSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} Length = 396 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 4e-05
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G S+ A+++I GD+D+M+ GG E+
Sbjct: 93 CGSGLRSVSMASQLIALGDADIMLVGGAEN 122
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} Length = 395 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 5e-05
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G S+ AA+ I G++DV++AGGTE+
Sbjct: 91 CGSGLKSVQLAAQSITSGENDVVIAGGTEN 120
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} Length = 418 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 6e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C++G ++ A I+ G D+ +A G ES
Sbjct: 117 CSSGLQAVASIAGGIRNGSYDIGMACGVES 146
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A Length = 442 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C++G ++ D A I+ G D+ + G ES
Sbjct: 118 CSSGLQAVADVAAAIKAGFYDIGIGAGLES 147
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... Length = 392 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ + I GD+ ++VAGG ES
Sbjct: 89 CGSGLRAVALGMQQIATGDASIIVAGGMES 118
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Length = 397 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
C +G ++ A + I GDS ++VAGG E+
Sbjct: 92 CGSGLKAVCLAVQSIGIGDSSIVVAGGMEN 121
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A Length = 397 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 4e-04
Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 26/113 (23%)
Query: 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 139
A KRG A + + G P I G G I A+ +A+ ++G VD +
Sbjct: 267 SEADKRGLTPLARIVSWSQVGVE-----PSIMGIGPIPAIKQAVTKAGWSLEDVDIFEIN 321
Query: 140 ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGAAGA 185
EA A + A L + K GAI GH LGA+G
Sbjct: 322 ----------EAFAAVSA----AIVKELGLNPEKVNIEGGAIALGHPLGASGC 360
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Length = 395 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 26/113 (23%)
Query: 80 EHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 139
+ AK+ A + + + P + A + LK GL+ + +
Sbjct: 267 DAAKRLNVTPLARIVAFADAAVE-----PIDFPIAPVYAASMVLKDVGLKKEDIAMWEVN 321
Query: 140 ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTK-----GAI--GHLLGAAGA 185
EA ++ + A L K GA+ GH +G +GA
Sbjct: 322 ----------EAFSLVVL----ANIKMLEIDPQKVNINGGAVSLGHPIGMSGA 360
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* Length = 395 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
CA+G +I A++ + G DVMVAGG ES
Sbjct: 94 CASGMKAIMMASQSLMCGHQDVMVAGGMES 123
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} Length = 407 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 6e-04
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 10 CATGAHSIGDAARMIQFGDSDVMVAGGTES 39
CA+G ++ AA+ ++ G D+++AGG ES
Sbjct: 96 CASGLEAVNTAAQKVRSGWDDLVLAGGVES 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 251 | |||
| 4ewg_A | 412 | Beta-ketoacyl synthase; ssgcid, structural genomic | 100.0 | |
| 1e5m_A | 416 | KAS II, beta ketoacyl acyl carrier protein synthas | 100.0 | |
| 2ix4_A | 431 | 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke | 100.0 | |
| 2gqd_A | 437 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli | 100.0 | |
| 3o04_A | 413 | LMO2201 protein, beta-keto-acyl carrier protein sy | 100.0 | |
| 2iwz_A | 438 | 3-oxoacyl-[acyl-carrier-protein] synthase; mitocho | 100.0 | |
| 3ho9_A | 427 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, | 100.0 | |
| 3mqd_A | 428 | Beta-ketoacyl synthase; ssgcid, ALS collaborative | 100.0 | |
| 1tqy_A | 424 | Beta-ketoacyl synthase/acyl transferase; alpha-bet | 100.0 | |
| 3kzu_A | 428 | 3-oxoacyl-(acyl-carrier-protein) synthase II; seat | 100.0 | |
| 1j3n_A | 408 | 3-oxoacyl-(acyl-carrier protein) synthase II; cond | 100.0 | |
| 1ox0_A | 430 | Beta ketoacyl-acyl carrier protein synthase; trans | 100.0 | |
| 4ddo_A | 451 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci | 100.0 | |
| 1tqy_B | 415 | Actinorhodin polyketide putative beta-ketoacyl SY; | 100.0 | |
| 2vba_A | 406 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop | 100.0 | |
| 2wge_A | 416 | 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta | 100.0 | |
| 2gp6_A | 434 | 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol | 100.0 | |
| 3hhd_A | 965 | Fatty acid synthase; transferase, multienzyme, meg | 100.0 | |
| 2hg4_A | 917 | DEBS, 6-deoxyerythronolide B synthase; ketosynthas | 100.0 | |
| 2qo3_A | 915 | Eryaii erythromycin polyketide synthase modules 3; | 100.0 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 100.0 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 99.96 | |
| 1wdk_C | 390 | 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame | 99.96 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 99.96 | |
| 2vu1_A | 392 | Acetyl-COA acetyltransferase; acyltransferase, PHB | 99.95 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 99.95 | |
| 2wu9_A | 442 | 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o | 99.95 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 99.95 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 99.94 | |
| 1afw_A | 393 | 3-ketoacetyl-COA thiolase; fatty acid metabolism; | 99.94 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 99.94 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 99.94 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 99.94 | |
| 3svk_A | 407 | Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, | 99.92 | |
| 4egv_A | 520 | Acetyl-COA acetyltransferase; NEW SUB-family, thio | 99.88 | |
| 1ub7_A | 322 | 3-oxoacyl-[acyl-carrier protein] synthase; fatty a | 99.86 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 99.8 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.8 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 99.79 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 99.73 | |
| 2x3e_A | 331 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, | 99.71 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 99.69 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 99.61 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 99.57 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 99.48 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 99.46 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 99.45 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 99.43 | |
| 1xpm_A | 396 | 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s | 99.35 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 99.29 | |
| 2d3m_A | 406 | Pentaketide chromone synthase; chalcone synthase, | 99.24 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 99.24 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 99.18 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 99.12 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 99.11 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 99.09 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 98.94 | |
| 3a5r_A | 387 | Benzalacetone synthase; chalcone synthase, type II | 98.87 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 98.86 | |
| 1xes_A | 413 | Dihydropinosylvin synthase; native structure, tran | 98.85 | |
| 1i88_A | 389 | CHS2, chalcone synthase 2; polyketide synthase, tr | 98.85 | |
| 1ee0_A | 402 | 2-pyrone synthase; polyketide synthase, thiolase f | 98.84 | |
| 2f82_A | 450 | HMG-COA synthase; HMGS1, transferase; 2.10A {Brass | 98.84 | |
| 3awk_A | 402 | Chalcone synthase-like polyketide synthase; type I | 98.81 | |
| 3ov2_A | 393 | Curcumin synthase; type III polyketide synthase, t | 98.78 | |
| 2p0u_A | 413 | Stilbenecarboxylate synthase 2; polyketide synthas | 98.75 | |
| 3oit_A | 387 | OS07G0271500 protein; type III polyketide synthase | 98.73 | |
| 3lma_A | 347 | Stage V sporulation protein AD (spovad); NESG, str | 98.72 | |
| 3e1h_A | 465 | PKSIIINC, putative uncharacterized protein; resorc | 98.69 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 98.66 | |
| 3v4n_A | 388 | HMG-COA synthase; hydroxymethylglutaryl-COA syntha | 98.66 | |
| 3sqz_A | 425 | Putative hydroxymethylglutaryl-COA synthase; thiol | 98.53 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 98.47 | |
| 2p8u_A | 478 | Hydroxymethylglutaryl-COA synthase, cytoplasmic; h | 98.2 | |
| 2v4w_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 97.57 | |
| 4e1l_A | 395 | Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, | 90.49 | |
| 4dd5_A | 396 | Acetyl-COA acetyltransferase; structural genomics, | 90.23 | |
| 2wya_A | 460 | Hydroxymethylglutaryl-COA synthase, mitochondrial; | 88.8 | |
| 3il3_A | 323 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 88.49 | |
| 3ss6_A | 394 | Acetyl-COA acetyltransferase; structural genomics, | 88.02 | |
| 3goa_A | 387 | 3-ketoacyl-COA thiolase; metabolism, fatty acid, p | 87.99 | |
| 3s21_A | 345 | 3-oxoacyl-[ACP] synthase III; non-decarboxylative | 87.59 | |
| 4ewp_A | 350 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; trans | 87.22 | |
| 3il6_A | 321 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 87.15 | |
| 3h78_A | 359 | PQS biosynthetic enzyme; PQSD, anthranilic acid, a | 87.14 | |
| 4dfe_A | 333 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci | 86.65 | |
| 3v7i_A | 413 | Putative polyketide synthase; type III polyketide | 85.78 | |
| 3led_A | 392 | 3-oxoacyl-acyl carrier protein synthase III; struc | 85.57 | |
| 4efi_A | 354 | 3-oxoacyl-(acyl-carrier protein) synthase; structu | 84.85 | |
| 3euo_A | 379 | Type III pentaketide synthase; alpha helix, acyltr | 84.83 | |
| 3gwa_A | 365 | 3-oxoacyl-(acyl-carrier-protein) synthase III; str | 84.67 | |
| 2iik_A | 418 | 3-ketoacyl-COA thiolase, peroxisomal; fatty acid m | 84.49 | |
| 2ib8_A | 395 | Acetyl-COA acetyltransferase; thiolase fold, potas | 83.79 | |
| 1ulq_A | 401 | Putative acetyl-COA acetyltransferase; structural | 82.98 | |
| 1ted_A | 393 | PKS18; thiolase fold, substrate binding tunnel, tr | 82.56 | |
| 1hnj_A | 317 | Beta-ketoacyl-acyl carrier protein synthase III; F | 82.22 | |
| 1u6e_A | 335 | 3-oxoacyl-[acyl-carrier-protein] synthase III; tra | 81.55 | |
| 2ebd_A | 309 | 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, | 81.41 | |
| 1zow_A | 313 | 3-oxoacyl-[acyl-carrier-protein] synthase III; FAB | 81.35 | |
| 1mzj_A | 339 | Beta-ketoacylsynthase III; beta-ketosynthase, arom | 81.18 | |
| 2h84_A | 374 | Steely1; thiolase-fold, type III polyketide syntha | 80.71 | |
| 1u0m_A | 382 | Putative polyketide synthase; type III polyketide | 80.49 | |
| 3s3l_A | 357 | CERJ; acyltransferase, FABH homologue, KS III homo | 80.29 | |
| 1wl4_A | 397 | Acetyl-coenzyme A acetyltransferase 2; thiolase fo | 80.06 |
| >4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-54 Score=374.01 Aligned_cols=241 Identities=38% Similarity=0.616 Sum_probs=223.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|. +++.....|...+.++.. ..+|+..|+|||..++|+
T Consensus 159 gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~-~s~~~~~~~~~~~~l~~~-~~~p~~~~rpfd~~~~G~~~g 236 (412)
T 4ewg_A 159 GRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEE-LSGPAVAVFDTLYATSTR-NDEPHLTPRPFDAKRDGLVVG 236 (412)
T ss_dssp SCEEECCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHTTTCBCCC-TTCGGGCCCTTBTTCCCBCBB
T ss_pred CCcccccchhHHHHHHHHHHHHHHHcCCCCEEEEecccc-CCHHHHHHHHHhhccccC-CCCCCCCCCCCCCCCCCCceE
Confidence 799999999999999999999999999999999999999 888888889888888764 556778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+++.| ...++.++++++|++||++|+||||||+|||||+.+|.
T Consensus 237 eGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p--~~~~~~~ai~~Al~~Agl~~~dId~ve~Hgtgt~~~D~ 314 (412)
T 4ewg_A 237 EGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAHMTQP--TASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDV 314 (412)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSSC--CHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCHHHHH
T ss_pred CeEEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHcCCCHHHCCEEEccCCCCccccH
Confidence 6788999999999999999999999877665 58899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC-CCCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF-NDNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (251)
+|..++..+|+.. ++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.+ ++++++ .+.+..+
T Consensus 315 ~E~~al~~~~~~~-----~~v~s~K~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~~~~~v~-~~~~~~~ 388 (412)
T 4ewg_A 315 AESQATARTFGER-----MPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIR-GEARAID 388 (412)
T ss_dssp HHHHHHHHHHCTT-----CEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTSCCCEECC-SSCEECC
T ss_pred HHHHHHHHHcCCC-----CeeeCccccccccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCccccccccc-CcccCCC
Confidence 9999999999753 89999999999999999999999999999999999999999999999 788776 4455567
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.+++++|+|||||+|+|+||++|+
T Consensus 389 ~~~~~~~sfgfGG~na~~vl~~~~ 412 (412)
T 4ewg_A 389 AEYVMSNNFAFGGINTSLIFRRVR 412 (412)
T ss_dssp CSEEEEEEEEGGGEEEEEEEECCC
T ss_pred CCEEEEeeecCCcceEEEEEeeCC
Confidence 899999999999999999999985
|
| >1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=373.80 Aligned_cols=247 Identities=51% Similarity=0.823 Sum_probs=227.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|..++.++.. +..|+..|+|||..++|+
T Consensus 158 gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~ls~~-~~~p~~~~rpfd~~~~G~v~g 236 (416)
T 1e5m_A 158 GPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKDRDGFVMG 236 (416)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCGGGTCCTTBTTCCSBCBB
T ss_pred CceeCccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHHcCCccCC-CCCCccccccCccCCCCceee
Confidence 7999999999999999999999999999999999999998888888888888888753 344678999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.+++.++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 237 eGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~~D~ 316 (416)
T 1e5m_A 237 EGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDV 316 (416)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred eeEEEEEECcHHHHHHCCCeEEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhHCCEEEEECCCCcCcCH
Confidence 66788899999999999999999998888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++.++|+... .+++|++.|+++||+++|+|++++++++++|++++|||++|+++|+|.+++++++ ...+..+.
T Consensus 317 ~E~~al~~~~g~~~--~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~~ 393 (416)
T 1e5m_A 317 TETRAIKQALGNHA--YNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP-GQSRALIV 393 (416)
T ss_dssp HHHHHHHHHHGGGG--GGSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCCCB-SSCEECCC
T ss_pred HHHHHHHHHHcccC--CCCeeeCcchhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccC-CccccCCC
Confidence 99999999997543 3489999999999999999999999999999999999999999999999988887 44455578
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+++++|||||||+|+|+||++|+
T Consensus 394 ~~a~~~sfGfGG~n~~~vl~~~~ 416 (416)
T 1e5m_A 394 DVALSNSFGFGGHNVTLAFKKYQ 416 (416)
T ss_dssp SEEEEEEEETTTEEEEEEEECCC
T ss_pred CEEEEccccCCCeeEEEEEEeCC
Confidence 99999999999999999999985
|
| >2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-53 Score=374.18 Aligned_cols=249 Identities=79% Similarity=1.218 Sum_probs=229.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||+.|+++|++|++|++||+|+|.++++..+..+..++.++..++.+|+..|+||+..++|+
T Consensus 170 gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~g~~~g 249 (431)
T 2ix4_A 170 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIG 249 (431)
T ss_dssp SCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCTTBTTCCSBCBB
T ss_pred CceeCccChhHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccccCccccCCcccccccCCCCCCCceee
Confidence 79999999999999999999999999999999999999999998888888899988776777888999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|.+++++|+|++.++|+.+++.|.++..++.++++++|+++|++|+||||||+|||||+.+|.
T Consensus 250 dGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~HgtgT~~~D~ 329 (431)
T 2ix4_A 250 EGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDA 329 (431)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred cceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCH
Confidence 66788889999999999999999999888777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCC-C
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM-P 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (251)
+|.+++..+|+......+++|++.|+++||+++|+|++++++++++|+++.|||++|+++|+|.++++.++. ..++. +
T Consensus 330 ~E~~al~~~~~~~~~~~~~~v~s~k~~~GH~~gAsG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~~-~~~~~~~ 408 (431)
T 2ix4_A 330 VEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPL-TTSKKML 408 (431)
T ss_dssp HHHHHHHHHHTHHHHTSCSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCSSSCCC-SSCEECC
T ss_pred HHHHHHHHHHcccccCCCceeecchhhhcccHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccCCc-cccccCC
Confidence 999999999975433345899999999999999999999999999999999999999999999999888873 33333 6
Q ss_pred CcEEEEecccccceeeeeEeeec
Q 040515 228 ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.|++++|+|||||+|+|+||++|
T Consensus 409 ~~~a~~~sfGfGG~na~~il~~~ 431 (431)
T 2ix4_A 409 VRTAMSNSFGFGGTNASLLFASI 431 (431)
T ss_dssp CSEEEEEEEETTTEEEEEEEECC
T ss_pred CCEEEEecccCCCeeEEEEEeeC
Confidence 79999999999999999999986
|
| >2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-53 Score=372.11 Aligned_cols=246 Identities=50% Similarity=0.833 Sum_probs=226.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|..++.++. +..|+..|+|||..++|+
T Consensus 179 gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~--~~~p~~~~~pfd~~~~G~v~g 256 (437)
T 2gqd_A 179 GPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAGFSASRALST--NDDIETACRPFQEGRDGFVMG 256 (437)
T ss_dssp SSEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CCCTTTSSCTTCTTCCSBCBB
T ss_pred CceEEecCCccHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCccC--CCCCccccCCCCCCCCCceee
Confidence 799999999999999999999999999999999999999889988888888888875 334778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.+++.++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 257 eGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~~D~ 336 (437)
T 2gqd_A 257 EGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDL 336 (437)
T ss_dssp CEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred ceEEEEEECcHHHHHhCCCceEEEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHhhCCEEEEECCCCcCcCH
Confidence 66788899999999999999999998888787788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|.+++.++|+... .+++|++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.+++++++ ...+..+.
T Consensus 337 ~E~~al~~~fg~~~--~~~~v~s~k~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~~ 413 (437)
T 2gqd_A 337 NEVKAIKNTFGEAA--KHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIVP-NEAQDLDI 413 (437)
T ss_dssp HHHHHHHHHHGGGG--TSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSCCSSCCSBCCB-SSCEECCC
T ss_pred HHHHHHHHHHhccC--CCceeecchhhhcCChhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCC-CccccCCC
Confidence 99999999997643 3589999999999999999999999999999999999999999999999998887 44455578
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+++++|+|||||+|+|+||++|+
T Consensus 414 ~~a~~~sfGfGG~na~~vl~~~~ 436 (437)
T 2gqd_A 414 TYAMSNSLGFGGHNAVLVFKKFE 436 (437)
T ss_dssp SEEEEEEECGGGEEEEEEEECCC
T ss_pred CEEEEccCcCCCeeEEEEEEecc
Confidence 99999999999999999999985
|
| >3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-53 Score=369.18 Aligned_cols=246 Identities=51% Similarity=0.852 Sum_probs=229.1
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||+.|+++|++|+||++||+|+|.++++..+..+...+.++. ...|+..++||+..++|+
T Consensus 155 gp~~~v~~aCss~~~Al~~A~~~I~~G~~d~~lvgG~e~~~~~~~~~~~~~~~~ls~--~~~p~~~~~pfd~~~~g~~~g 232 (413)
T 3o04_A 155 GINSTTVTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSL--NPDPETACRPFDKDRDGFIIG 232 (413)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CCCTTTSCCTTBTTCCSBCBB
T ss_pred CcceeecchhHHHHHHHHHHHHHHHcCCCCEEEEeEEcccCCHHHHHHHHhcccccC--CCCCCCCcCCCcCCCCCceEe
Confidence 799999999999999999999999999999999999999999999999999988874 345778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|++++.+++++|+|++.++|+.+...+.+...++.++++++|+++|++|+||||||+|||||+.+|.
T Consensus 233 dGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~a~~~al~~agl~~~dId~ve~HgtgT~~~d~ 312 (413)
T 3o04_A 233 EGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDE 312 (413)
T ss_dssp CEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCGGGHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHH
T ss_pred ccEEEEEEeeHHHHHhCCCeEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCH
Confidence 67888999999999999999999999888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++..+|+.... +++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.++++.++ ...+..+.
T Consensus 313 ~e~~al~~~~~~~~~--~~~v~s~k~~~GH~~gAsG~~~~~~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~ 389 (413)
T 3o04_A 313 YETQAIKTVFGEHAK--KLAISSTKSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVP-NEAREANV 389 (413)
T ss_dssp HHHHHHHHHHGGGTT--TSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCCSBCSSCCSCCCB-SSCEECCC
T ss_pred HHHHHHHHHhcccCC--CCceecccccccccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCcccCC-CcccCCCC
Confidence 999999999986543 499999999999999999999999999999999999999999999999999888 44555678
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+++++|+|||||+|+|+||++|+
T Consensus 390 ~~~~~~sfgfgG~na~~vl~~~~ 412 (413)
T 3o04_A 390 NVVISNSFGFGGHNATLVFKRIE 412 (413)
T ss_dssp CEEEEEEEETTTEEEEEEEECCC
T ss_pred CEEEEeCccCCceEEEEEEEeCC
Confidence 99999999999999999999985
|
| >2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-53 Score=370.51 Aligned_cols=245 Identities=57% Similarity=0.887 Sum_probs=223.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||..|+++|++|+||++||||+|.++++..+..|..++.++.. ..|+..|+|||..++|+
T Consensus 179 gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~--~~p~~~~~pfd~~~~G~~~g 256 (438)
T 2iwz_A 179 GPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTDSCISPLSLAGFSRARALSTN--SDPKLACRPFHPKRDGFVMG 256 (438)
T ss_dssp SCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC--SCTTTSCCTTCTTCCSBCBB
T ss_pred CceeeecCchhHHHHHHHHHHHHHHcCCCCEEEEEeeehhcCHHHHHHHHhcCCcCCC--CCCCcccccCCCCCCCEEee
Confidence 7999999999999999999999999999999999999988889888888888888752 34678999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.++..++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 257 eGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~d~~~~t~p~~~~~~~~~ai~~Al~~Agl~p~dId~ve~HgtgT~~gD~ 336 (438)
T 2iwz_A 257 EGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGDA 336 (438)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred ceEEEEEeccHHHHHhCCCceEEEEecceecCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCCCcccCH
Confidence 67788899999999999999999998888887788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCC-
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP- 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (251)
+|..++..+|+... .+++|++.|+++||+++|+|++++++++++|+++.|||++|+++|+|.+++++++ ...++.+
T Consensus 337 ~E~~al~~~fg~~~--~~~~v~s~K~~~GH~~gAaG~~~li~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~~ 413 (438)
T 2iwz_A 337 AENKAIKHLFKDHA--YALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCSEPEFDLNYVP-LKAQEWKT 413 (438)
T ss_dssp HHHHHHHHHHGGGG--GTSEEECCHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSCCCTTCCSBCCB-SSCEECCC
T ss_pred HHHHHHHHHHhccC--CCcceecchhhhcCCHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccccC-CCcccCCC
Confidence 99999999997643 3489999999999999999999999999999999999999999999999988877 3333333
Q ss_pred --CcEEEEecccccceeeeeEeeec
Q 040515 228 --ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 --~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
++++++|+|||||+|+|+||++|
T Consensus 414 ~~~~~a~~~sfGfGG~na~~vl~~~ 438 (438)
T 2iwz_A 414 EKRFIGLTNSFGFGGTNATLCIAGL 438 (438)
T ss_dssp SSSCEEEEEEEETTTEEEEEEEECC
T ss_pred CCccEEEEecCcCCCeeEEEEEeeC
Confidence 79999999999999999999986
|
| >3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-53 Score=371.51 Aligned_cols=246 Identities=53% Similarity=0.872 Sum_probs=226.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..+...+.++.. +..|...|+||+..++|+
T Consensus 169 Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~~-~~~~~~~~~pfd~~~~G~v~g 247 (427)
T 3ho9_A 169 GPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLG 247 (427)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHCCTTBTTCCSBCBB
T ss_pred CCeecccchhHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhccCcccC-CCCCCcccCCccCCCCCceee
Confidence 7999999999999999999999999999999999999999999999999999988754 344567899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.+.++..++.++++++|++||++|+||||||+|||||+.+|.
T Consensus 248 eGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT~~~d~ 327 (427)
T 3ho9_A 248 DGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDK 327 (427)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSBTTBCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred eeEEEEEEccHHHHHHCCCcEEEEEEEEeecCCCCCcCCCCCCHHHHHHHHHHHHHHcCCCHHHccEEEecCCcCCCcCH
Confidence 67889999999999999999999999888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCC-C
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM-P 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~-~ 227 (251)
+|..++.++|+... .++++++.|.++||+++|||++++++++++|++++|||++|+++|+|.++++.++. ..++. +
T Consensus 328 ~e~~a~~~~~g~~~--~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~-~~~~~~~ 404 (427)
T 3ho9_A 328 AEAQAVKTIFGEAA--SRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPH-EARQVSG 404 (427)
T ss_dssp HHHHHHHHHHGGGG--GTSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCCBCCBS-SCEECSS
T ss_pred HHHHHHHHHhcccC--CCeEEecchHhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccc-ccccCCC
Confidence 99999999998643 24899999999999999999999999999999999999999999999999988873 33333 6
Q ss_pred CcEEEEecccccceeeeeEeeec
Q 040515 228 ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+++++|+|||||+|+|+||++|
T Consensus 405 ~~~a~~~sfGfgG~na~~vl~~~ 427 (427)
T 3ho9_A 405 MEYTLCNSFGFGGTNGSLIFKKI 427 (427)
T ss_dssp CCEEEEEEEETTTEEEEEEEECC
T ss_pred CCEEEEeCccCCceeEEEEEEeC
Confidence 89999999999999999999986
|
| >3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-53 Score=370.37 Aligned_cols=242 Identities=43% Similarity=0.689 Sum_probs=217.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.+ ++.....+..++.++......|+..|+|||..++|+
T Consensus 173 gp~~tv~~aCsSgl~Ai~~A~~~I~~G~~d~alvgG~e~~-s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~g 251 (428)
T 3mqd_A 173 GINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDL-DWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIA 251 (428)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECC-CHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBB
T ss_pred CceeeecCccHHHHHHHHHHHHHHHcCCCCEEEEEeeccc-chHHHHHHHHhhhhcccccCCcccccCcccCCCCCcccc
Confidence 7999999999999999999999999999999999999995 455556688888888765667888999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+++.| ++.++.++++++|+ |++ +||||||+|||||+.+|+
T Consensus 252 EGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~P--~~~~~~~ai~~Al~--gl~-~dId~ve~HgtgT~~~D~ 326 (428)
T 3mqd_A 252 GGAGVLVLEDLETALARGAKIYGEIVGYGATSDGYDMVAP--SGEGAIRCMKMALS--TVT-SKIDYINPHATSTPAGDA 326 (428)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSC--CSHHHHHHHHHHHT--TCC-SCCCEEECCCCSCHHHHH
T ss_pred cceEEEEEccHHHHHhCCCcEEEEEEEEEEcCCCCCCCCC--CHHHHHHHHHHHHh--CCc-cccCEEEEeCCCCCCcCH
Confidence 6788999999999999999999999877665 67789999999999 999 999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC-CCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN-DNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~-~~~~~~~~~~~~~ 227 (251)
+|..++.++|+.... .++|++.|+++||+++|||++++++++++|++++|||++|+++|+|.++ +++++ ...+..+
T Consensus 327 ~E~~al~~~~~~~~~--~~~v~s~K~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~~~~-~~~~~~~ 403 (428)
T 3mqd_A 327 PEIEAIRQIFGAGDV--CPPIAATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDPAFADMPIVR-KRIDNVQ 403 (428)
T ss_dssp HHHHHHHHHHCSGGG--SCCBCCTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGTTSCBCS-SCEESCC
T ss_pred HHHHHHHHHhcccCC--CceeecchhhhcccHHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCcccccCCccC-CccccCC
Confidence 999999999984222 2789999999999999999999999999999999999999999999986 66665 3333356
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
++++++|||||||+|+|+||++|+
T Consensus 404 ~~~~~~~sfGfGG~Na~~vl~~~~ 427 (428)
T 3mqd_A 404 LNTVLSNSFGFGGTNATLVFQRYQ 427 (428)
T ss_dssp CCEEEEEEEETTTEEEEEEEECCC
T ss_pred CCEEEEecCcCCcceEEEEEeecC
Confidence 899999999999999999999985
|
| >1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-53 Score=370.21 Aligned_cols=246 Identities=36% Similarity=0.617 Sum_probs=226.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|..++.++.+ +..|+..|+|||..++|+
T Consensus 160 gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~-~~~p~~~~rpfd~~~~G~v~g 238 (424)
T 1tqy_A 160 GPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR-NDDPEHASRPFDGTRDGFVLA 238 (424)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-CSCGGGCCCTTBTTCCCBCEE
T ss_pred CceEeecCcccHHHHHHHHHHHHHHCCCCCEEEEeeecccCCHHHHHHHHhhccccCC-CCCCCCCccCCCCCCCceeee
Confidence 7999999999999999999999999999999999999998889888888888888753 345678999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+.+.|.+++.++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 239 eGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~g~~~~~ai~~al~~agl~~~dId~ve~Hgtgt~~gD~ 318 (424)
T 1tqy_A 239 EGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDR 318 (424)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHH
T ss_pred cceeEEEeccHHHHHhCCCcEEEEEeeeEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEecCccCcCcCH
Confidence 67889999999999999999999998888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++.++|+... .+++|++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.++++.++ .+.+..+.
T Consensus 319 ~E~~al~~~f~~~~--~~~~v~s~k~~~GH~~~AaG~~~l~~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~~ 395 (424)
T 1tqy_A 319 HETAAYKRALGEHA--RRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVP-LEARERKL 395 (424)
T ss_dssp HHHHHHHHHTGGGG--GGSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSBBTTBCSCCCB-SSCEECCC
T ss_pred HHHHHHHHHhcccC--CCCeeeccccccccChhhhHHHHHHHHHHHHHcCCcCCCCCCCCCCCCCCcccCC-CcccCCCC
Confidence 99999999997643 3489999999999999999999999999999999999999999999999998887 44455568
Q ss_pred cEEEEecccccceeeeeEeeec
Q 040515 229 SAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+++++|+|||||+|+|+||+++
T Consensus 396 ~~a~~~sfG~GG~n~~~vl~~~ 417 (424)
T 1tqy_A 396 RSVLTVGSGFGGFQSAMVLRDA 417 (424)
T ss_dssp SEEEEEEEETTTEEEEEEEECH
T ss_pred CEEEEccccCCceEEEEEEccC
Confidence 9999999999999999999986
|
| >3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=365.62 Aligned_cols=247 Identities=57% Similarity=0.914 Sum_probs=230.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||.+|+++|++|+||++||+|+|.++++..+..+...+.++......|...++||+.+++|+
T Consensus 169 Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~G~v~g 248 (428)
T 3kzu_A 169 GPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVMG 248 (428)
T ss_dssp SCEECBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTTCCSBCBB
T ss_pred CceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccCCCceeec
Confidence 79999999999999999999999999999999999999999999999999999998766667778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|++++.+++++|+|++.++|+.+.+.|.+...++.++++++|+++|++|+||||||+||+|| .+|.
T Consensus 249 dGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~HgtgT-~~d~ 327 (428)
T 3kzu_A 249 EGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAGIVPDEIDYINAHGTST-MADT 327 (428)
T ss_dssp CEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSS-TTHH
T ss_pred CceEEEEEccHHHHHhCCCceEEEEEEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHeeEEEecCCcc-hhhH
Confidence 678899999999999999999999998888888888999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++.+.|+... .++++++.|.++||+++|+|++++++++++|++++|||++|+++|+|.++++.++ ...+..+.
T Consensus 328 ~e~~al~~~~g~~~--~~~~v~s~k~~~GH~~gAsG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~ 404 (428)
T 3kzu_A 328 IELGAVERVVGEAA--AKISMSSTKSSIGHLLGAAGAAEAVFSTLAIRDNIAPATLNLDNPAAQTRIDLVP-HKPRERKI 404 (428)
T ss_dssp HHHHHHHHHHGGGG--GGCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBSSCCSSBCCB-SSCEECCC
T ss_pred HHHHHHHHHhccCC--CceeeCCchhhhCCCchhhHHHHHHHHHHHhccCccCCCCCCCCCCCCCCcccCC-CCCcCCCC
Confidence 99999999998643 3489999999999999999999999999999999999999999999999999888 44455678
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+++++|+|||||+|+|+||++|+
T Consensus 405 ~~a~~~sfGfgG~na~~vl~~~~ 427 (428)
T 3kzu_A 405 DVALSNSFGFGGTNASLVLRRYT 427 (428)
T ss_dssp SEEEEEEEETTTEEEEEEEECCC
T ss_pred CEEEEeCcccChhhEEEEEeecC
Confidence 99999999999999999999985
|
| >1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=366.29 Aligned_cols=245 Identities=57% Similarity=0.932 Sum_probs=225.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..|...+.++.. +..|+..|+|||..++|+
T Consensus 152 gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~ls~~-~~~p~~~~~pfd~~~dg~v~g 230 (408)
T 1j3n_A 152 GPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLSRDGFVMG 230 (408)
T ss_dssp SCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHCCTTBTTCCCBCBB
T ss_pred CceeCccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecccCCHHHHHHHHhcccccCC-CCCCCcCcccCcCCCCceEEe
Confidence 7999999999999999999999999999999999999998999988899988888743 455667899999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|++++++|+|++.++|+.+.+.|.+.+.++.++++++|+++|++|+||||||+|++||+.+|+
T Consensus 231 eGaaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~gD~ 310 (408)
T 1j3n_A 231 EGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDR 310 (408)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred eeEEEEEEeeHHHHHhCCCcEEEEEEEEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCcccCH
Confidence 66788899999999999999999999888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|..++.++|+... .++++++.|.++||+++|+|++++++++++|+++.+||++|+++|+|.++++.++ ..+..+.
T Consensus 311 ~E~~al~~~~g~~~--~~~~v~s~k~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~v~--~~~~~~~ 386 (408)
T 1j3n_A 311 AEVLAIKRVFGDHA--KRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVP--EPREAKV 386 (408)
T ss_dssp HHHHHHHHHHHHHH--TTCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCCS--SCEECCC
T ss_pred HHHHHHHHHhcCcC--CCceEECchhhhccCHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccCC--CCcCCCC
Confidence 99999999998543 2489999999999999999999999999999999999999999999999988887 3444568
Q ss_pred cEEEEecccccceeeeeEeeec
Q 040515 229 SAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+++++|+|||||+|+|+||++|
T Consensus 387 ~~a~~~sfGfGG~na~~vl~~~ 408 (408)
T 1j3n_A 387 DYALSNSFAFGGHNAVLAFKRV 408 (408)
T ss_dssp SEEEEEEECTTSEEEEEEEECC
T ss_pred CEEEEecccCCcceEEEEEecC
Confidence 9999999999999999999986
|
| >1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=364.93 Aligned_cols=243 Identities=47% Similarity=0.704 Sum_probs=224.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||.+|+++|++|+||++||||+|.++++..+..|..++.++. +..|+..|+|||..++|+
T Consensus 174 Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~p~~~~~~~~~~~ls~--~~~p~~~~~pFd~~~~g~~~g 251 (430)
T 1ox0_A 174 GVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--TEDPTRASIPFDKDRNGFVMG 251 (430)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCC--CSSTTSSSCTTBTTCCSBCBC
T ss_pred CceEeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhCCCccC--CCCCCCCCCCCCCCCCCcccc
Confidence 799999999999999999999999999999999999999888988888888888864 344778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|.++|++|+|++.++|+.+.+.|.++..++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 252 eGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D~ 331 (430)
T 1ox0_A 252 EGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 331 (430)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHH
T ss_pred ceEEEEEECcHHHHHhCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHhCcCHHHcCEEEEeCCcCcccCH
Confidence 67788889999999999999999998888887788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
.|..++.++|+. +++|++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.++++.++ ...+..+.
T Consensus 332 ~E~~al~~~~g~-----~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~~ 405 (430)
T 1ox0_A 332 GESGAIVAVLGK-----EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVY-GQGLEKEI 405 (430)
T ss_dssp HHHHHHHHHHCS-----SSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSEECB-SSCEECCC
T ss_pred HHHHHHHHHhCC-----CceecccccccccchhhHHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCcccCC-CCCcCCCC
Confidence 999999999975 389999999999999999999999999999999999999999999999888777 33444568
Q ss_pred cEEEEecccccceeeeeEeeecC
Q 040515 229 SAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+++++|+|||||+|+|+||++|+
T Consensus 406 ~~a~~~sfGfGG~na~~vl~~~~ 428 (430)
T 1ox0_A 406 PYAISNTFGFGGHNAVLAFKRWE 428 (430)
T ss_dssp SEEEEEEEETTTEEEEEEEECCC
T ss_pred CEEEEeCccCCCceEEEEEeecC
Confidence 99999999999999999999975
|
| >4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-52 Score=367.34 Aligned_cols=247 Identities=52% Similarity=0.826 Sum_probs=228.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||..|+++|++|+||++||+|+|.++.+..+..+...+.++......|...++||+..++|+
T Consensus 184 Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~~g~v~g 263 (451)
T 4ddo_A 184 GPLGCPVTACAASVQAIGDAMRMIRTGEADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMG 263 (451)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBB
T ss_pred CceeeecCccHHHHHHHHHHHHHHHCCCCCEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccccCCCCcEEe
Confidence 79999999999999999999999999999999999999999999999999999888765666778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|++++.+++++|+|++.++|+.+...+.+...++.++++++|+++|++|+||||||+|++||+.+|.
T Consensus 264 dGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~d~~~~~~~~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~d~ 343 (451)
T 4ddo_A 264 EGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYVNAHATSTPVGDA 343 (451)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHH
T ss_pred ceEEEEEEeeHHHHHhCCCceEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHcCEEEecCCcCcccCH
Confidence 67889999999999999999999998888887788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC-CCCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF-NDNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (251)
+|..++.++|+. ..+++|++.|+++||+++|+|++++++++++|+++++||++|+++|+|.+ ++++++ ...+..+
T Consensus 344 ~E~~al~~~~~~---~~~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~-~~~~~~~ 419 (451)
T 4ddo_A 344 GEIEALKTVFGV---GAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGVLPGTLNLEHPDPAADGLDLIG-PAARHVP 419 (451)
T ss_dssp HHHHHHHHHHCS---SSSCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCGGGTTSEECC-SSCEECC
T ss_pred HHHHHHHHHhCC---CCCCcccCchhhhccCHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCcccccccccC-CCCCCCC
Confidence 999999999976 23589999999999999999999999999999999999999999999998 777776 4444567
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.+++++|+|||||+|+|+||++|+
T Consensus 420 ~~~a~~~sfgfgG~na~~vl~~~~ 443 (451)
T 4ddo_A 420 VEIALSNGFGFGGVNASVLFRRYP 443 (451)
T ss_dssp CSEEEEEEEETTTEEEEEEEEESC
T ss_pred cCEEEEeeEcCCCceEEEEEeeCC
Confidence 899999999999999999999974
|
| >1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-52 Score=362.89 Aligned_cols=240 Identities=25% Similarity=0.376 Sum_probs=219.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||+.|+++|++| ||++||||+|.++++..+..+..++.++. +..|++.|+||+..++|+
T Consensus 160 gp~~~v~~aCsS~l~Al~~A~~~I~~G-~d~~LvgG~e~~~~~~~~~~~~~~~~ls~--~~~~~~~~~pfd~~~~G~~~g 236 (415)
T 1tqy_B 160 GPSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST--ATDPDRAYLPFDERAAGYVPG 236 (415)
T ss_dssp SSCEEEECGGGHHHHHHHHHHHHHHHT-CSEEEEEEEECCCSHHHHHHHHTTSCBCC--CSCGGGSCCTTSTTCCCBCBB
T ss_pred CceEeecCCccHHHHHHHHHHHHHHcC-CCEEEEeeecCcCCHHHHHHHHhccCccC--CCCCCCCcCCCCCCCCCccee
Confidence 799999999999999999999999999 99999999999899999999999888874 333567999999999998
Q ss_pred ---------chhhhhhcCC-eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ---------ELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ---------~~~~A~~~g~-~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+++|+ ++|++|+|++.++|+.+.+.|.+ ++.++++++|+++|++|+||||||+|||||+.+|
T Consensus 237 eGaaavvL~~~~~A~~~g~~~i~a~I~g~~~~~dg~~~~~p~~---~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D 313 (415)
T 1tqy_B 237 EGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA---GLERAIRLALNDAGTGPEDVDVVFADGAGVPELD 313 (415)
T ss_dssp CEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTCCCCC---SHHHHHHHHHHHHTCCGGGCCEEECCCCCSHHHH
T ss_pred eeEEEEEECcHHHHHHCCCCceEEEEEEEEEccCCCCCCCCCH---HHHHHHHHHHHHcCCCHhHCCEEEEeCCCCcCcC
Confidence 6788999999 99999999999999988776665 7889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP 227 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (251)
.+|..+++.+|+.. +++|++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.++++.++ ...+..+
T Consensus 314 ~~E~~al~~~~g~~----~~~v~s~K~~~GH~~gAaG~~~~~~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~ 388 (415)
T 1tqy_B 314 AAEARAIGRVFGRE----GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVL-GEPRSTA 388 (415)
T ss_dssp HHHHHHHHHHHCTT----CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCCCCGGGCCEECB-SSCBCCC
T ss_pred HHHHHHHHHHhCCC----CceEeccchhhccChHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCccccC-CCCccCC
Confidence 99999999999753 389999999999999999999999999999999999999999999999888777 4444557
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
++++++|+|||||+|+|+||++++
T Consensus 389 ~~~a~~~sfGfgG~n~~~vl~~~~ 412 (415)
T 1tqy_B 389 PRTALVLARGRWGFNSAAVLRRFA 412 (415)
T ss_dssp CSEEEEEEEETTTEEEEEEEEEC-
T ss_pred CCEEEEecCcCCCeEEEEEEecCC
Confidence 899999999999999999999874
|
| >2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-52 Score=363.04 Aligned_cols=239 Identities=46% Similarity=0.730 Sum_probs=215.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+. |..++.++..++..|+..|+|||..++|+
T Consensus 154 Gp~~~v~taCsS~l~Al~~A~~~I~~G~~d~alvgG~e~~~~~~~~~-~~~~~~ls~~~~~~p~~~~~pfd~~~~G~v~g 232 (406)
T 2vba_A 154 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACE-FDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232 (406)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCHHHHHH-HHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBB
T ss_pred CceeeeccchhHHHHHHHHHHHHHHcCCCCEEEEeeeccccChHHHH-HhhccccccccCCCCccccCcCcCCCCceEee
Confidence 79999999999999999999999999999999999999988887666 88888887533444778999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|+++|++|+|++.++|+.+++.|. ..++.++++++|+++| +||||||+|||||+.+|.
T Consensus 233 EGaaavvL~~~~~A~~~g~~i~a~I~g~~~~~dg~~~t~p~--~~~~~~ai~~al~~ag---~dId~ve~HgtgT~~gD~ 307 (406)
T 2vba_A 233 GGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHGVD---TPIDYLNSHGTSTPVGDV 307 (406)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCTTSCC--SHHHHHHHHHHHTTCC---SCCCEEECCCCSCHHHHH
T ss_pred ceEEEEEeCcHHHHHHCCCeEEEEEEEEEEcCCCCCCCCCC--HHHHHHHHHHHHhhCC---CCccEEEeeCccCcccCH
Confidence 67889999999999999999999998766554 7789999999999999 899999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC-CCCCccccCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN-DNFMPLTASKDMP 227 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~-~~~~~~~~~~~~~ 227 (251)
+|..++.++|+.. .++|++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.++ +++++. ..+. +
T Consensus 308 ~E~~al~~~fg~~----~~~v~s~K~~~GH~~gAaG~~~~i~~~l~l~~~~ipp~~~~~~~~~~~~~~~~v~~-~~~~-~ 381 (406)
T 2vba_A 308 KELAAIREVFGDK----SPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTE-TTDR-E 381 (406)
T ss_dssp HHHHHHHHHHTTC----CCEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCTTSEECCS-CEEC-C
T ss_pred HHHHHHHHHhCcC----CCceeCchhhhcccHHHHHHHHHHHHHHHHhcCccCCCCCCCCCCCCccccccCCc-ccCC-C
Confidence 9999999999754 2789999999999999999999999999999999999999999999998 777762 2223 6
Q ss_pred CcEEEEecccccceeeeeEeeecC
Q 040515 228 ISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
++++++|+|||||+|+|+||++|+
T Consensus 382 ~~~a~~~sfGfgG~na~~vl~~~~ 405 (406)
T 2vba_A 382 LTTVMSNSFGFGGTNATLVMRKLK 405 (406)
T ss_dssp CCEEEEEEEETTTEEEEEEEECC-
T ss_pred CCEEEEcCCCCCCeEEEEEEEeCC
Confidence 899999999999999999999975
|
| >2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-52 Score=362.15 Aligned_cols=243 Identities=45% Similarity=0.704 Sum_probs=222.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||+.|+++|++|++|++||+|+|.++.+..+..+...+.++.. +.+|+..|+|||..++|+
T Consensus 162 gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~~LvgG~e~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~pfd~~~dg~v~g 240 (416)
T 2wge_A 162 AGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR-NDEPERASRPFDKDRDGFVFG 240 (416)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEECCCCCCHHHHHHHHTTTCBCCC-TTSGGGSCCTTBTTCCCBCBB
T ss_pred CCcccccCchHHHHHHHHHHHHHHHcCCCCEEEEeeecCccchHHHHHHHhcchhhcc-ccCCcccccccccCCCCcccc
Confidence 7999999999999999999999999999999999999998988888888888887643 445778999999999988
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|.+++++|+|++.++|+.+.+.|.+...++.++++++|+++|++|+||||||+|||||+.+|.
T Consensus 241 eGaaavvL~~~~~A~~~g~~~~a~i~g~~~~~dg~~~~~p~~~~~~~~~ai~~al~~agl~~~dId~ve~HgtgT~~gD~ 320 (416)
T 2wge_A 241 EAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDA 320 (416)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCHHHHH
T ss_pred CceEEEEECcHHHHHHCCCceEEEEEEEEEecCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHCCEEEECCCCCcCCCH
Confidence 66788889999999999999999998877777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCC
Q 040515 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPI 228 (251)
Q Consensus 149 ~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (251)
+|.+++..+ +.. ++++++.|+++||+++|+|++++++++++|+++.+||++|+++|+|.++++.++ .+.+..+.
T Consensus 321 ~E~~al~~~-~~~----~~~v~s~k~~~GH~~gAsG~~~~i~~~l~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~~ 394 (416)
T 2wge_A 321 AEANAIRVA-GCD----QAAVYAPKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVA-GEPRYGDY 394 (416)
T ss_dssp HHHHHHHHT-TCT----TSEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCCSBCTTTCCEECC-SSCEECCC
T ss_pred HHHHHHHHh-ccC----CCCccCCcccccCcHHHHHHHHHHHHHHHHhcCCcCCCCCCCCCCCCCCcccCC-CCCccCCC
Confidence 999999988 432 489999999999999999999999999999999999999999999999988877 34444578
Q ss_pred cEEEEecccccceeeeeEeeec
Q 040515 229 SAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 229 ~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
|++++|||||||+|+|+||++|
T Consensus 395 ~~a~~~sfGfGG~na~~vl~~~ 416 (416)
T 2wge_A 395 RYAVNNSFGFGGHNVALAFGRY 416 (416)
T ss_dssp CEEEEEEEETTTEEEEEEEECC
T ss_pred CEEEEeCcccCceeEEEEEEeC
Confidence 9999999999999999999986
|
| >2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-51 Score=360.08 Aligned_cols=244 Identities=40% Similarity=0.653 Sum_probs=224.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhh-hcccccCCCCCCcccccccCCCcc--
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSR-ALTTKYNGTPQEASRPFDCGRDGF-- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~f~~~~~g~-- 77 (251)
||+++|+++|+|+++||..|+++|++|+||++||+|+|.++.+..+..+..++ .++.. +..|+..|+|||..++|+
T Consensus 178 Gp~~~v~~aCsS~l~Al~~A~~~I~~G~~d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~-~~~p~~~~~pfd~~~~g~v~ 256 (434)
T 2gp6_A 178 AGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMSTN-NDDPAGACRPFDRDRDGFVF 256 (434)
T ss_dssp SCEECEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEECCCCCHHHHHHHHTTTSSCCCC-TTCTTTSCCSSBTTCCCCCB
T ss_pred CCeEEeCCCCcHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHHHHHHhcCC-CCCCCCceecccccCCCcce
Confidence 79999999999999999999999999999999999999999988888888888 66543 445778999999999988
Q ss_pred ----------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ----------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ----------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+++|++++++|+|++.++|+.+.+.|.+...++.++++++|+++|++|+||||||+|+++|+.+|
T Consensus 257 gdGAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~~~~p~~~~~~~~~ai~~al~~Agl~~~dId~ve~Hgtgt~~~D 336 (434)
T 2gp6_A 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGD 336 (434)
T ss_dssp BCCEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHTTCCTTTEEEEECCCCSCHHHH
T ss_pred ecceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHcCEEEEeCCcCccch
Confidence 6678888999999999999999999988888778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP 227 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (251)
.+|..++..+|+.. ++++++.|.++||+++|+|++++++++++|+++.+||++|+++|+|.++++.++ ...+..+
T Consensus 337 ~~E~~al~~~fg~~----~~~v~s~k~~~GH~~gAaG~~~~i~~~~~l~~~~ipp~~~~~~~~p~~~~~~v~-~~~~~~~ 411 (434)
T 2gp6_A 337 LAEGRAINNALGGN----RPAVYAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVA-GEPRPGN 411 (434)
T ss_dssp HHHHHHHHHHHTTC----CCEECCTHHHHCBCTTTHHHHHHHHHHHHHHHSCCCCCSSCSSBCTTCCCEECC-SSCCCSC
T ss_pred HHHHHHHHHHhccC----CCCcccchhhhcCchhhhHHHHHHHHHHHHhcCccCCCCCCCCCCCCCCccccC-CCccCCC
Confidence 99999999999753 489999999999999999999999999999999999999999999999988877 4445567
Q ss_pred CcEEEEecccccceeeeeEeeec
Q 040515 228 ISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+++++|+|||||+|+|+||++|
T Consensus 412 ~~~a~~~sfGfGG~na~~vl~~~ 434 (434)
T 2gp6_A 412 YRYAINNSFGFGGHNVAIAFGRY 434 (434)
T ss_dssp CCEEEEEEEETTTEEEEEEEECC
T ss_pred CCEEEEeCCcCCCeeEEEEEEeC
Confidence 89999999999999999999986
|
| >3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-51 Score=384.89 Aligned_cols=240 Identities=23% Similarity=0.391 Sum_probs=213.6
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..+...+.++ |++.|+|||..++|+
T Consensus 154 GPs~tvdtACSSsl~Al~~A~~~I~~G~~d~aLagGv~~~~~p~~~~~~~~~~~ls------~~g~~~~Fd~~adG~~~g 227 (965)
T 3hhd_A 154 GPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLGMLS------PEGTCKAFDTAGNGYCRS 227 (965)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCCHHHHHHHHHHTCBC------TTCCCCTTBTTCCSBCBB
T ss_pred CCeeeecCchHHHHHHHHHHHHHHHcCCCCEEEEeeeccccCHHHHHHHHhccCcC------CCCccccchhccCCcccc
Confidence 79999999999999999999999999999999999999999999999999999987 668999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHH-ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~-~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+ ++|++|+|++.++|+.+ .....|+..++.++++++|++||++|+||||||+|||||+.+|
T Consensus 228 EGagavvL~~l~~A~----~i~a~I~g~~~n~dg~~~~~~t~P~~~~q~~~i~~Al~~Agl~p~dIdyvEaHgTgT~~gD 303 (965)
T 3hhd_A 228 EGVVAVLLTKKSLAR----RVYATILNAGTNTDGFKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGD 303 (965)
T ss_dssp CEEEEEEEEEGGGCS----SCSEEEEEEEEEECCCCTTCTTSCCHHHHHHHHHHHHHHTTCCGGGEEEEECCCCCCTTHH
T ss_pred ceEEEEEEecHHHcC----cccEEEEeeeccCCCCCCCCCcCCCHHHHHHHHHHHHHHhCCCHHHhccccccCCCCCCCC
Confidence 455554 58999999999999965 4456678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC-CC---CCccccC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN-DN---FMPLTAS 223 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~-~~---~~~~~~~ 223 (251)
++|..++.++|+.. ...+++|+++|+++||+++|+|+++++|++++|+++.|||++|+++|+|.++ +. +....+.
T Consensus 304 ~~E~~Al~~~f~~~-~~~~~~vgs~Ks~iGH~~~AaG~~~lik~~l~l~~~~ipp~~~~~~~np~i~~~~~~~~~v~~~~ 382 (965)
T 3hhd_A 304 PQELNGITRALCAT-RQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPALLDGRLQVVDQP 382 (965)
T ss_dssp HHHHHHHHHHHCSS-CSSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCCSBCTTCHHHHHTSEEECCSC
T ss_pred HHHHHHHHHHhccc-CCCceeeeccccccccchhhhhHHHHHHHHHHHhcCCcCCccCCCCCCccCcccccCceeecCCC
Confidence 99999999999754 3457999999999999999999999999999999999999999999999986 11 1111233
Q ss_pred CCCCCcEEEEecccccceeeeeEeeecC
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
++.+.+++++|||||||+|+|+||++++
T Consensus 383 ~~~~~~~a~v~sfG~gG~Nah~il~~~~ 410 (965)
T 3hhd_A 383 LPVRGGNVGINSFGFGGSNVHIILRPNT 410 (965)
T ss_dssp EECCSCEEEEEEECTTSEEEEEEEEECC
T ss_pred ccCCCCeEEEecccCCCceEEEEeccCC
Confidence 3444568999999999999999999863
|
| >2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=379.85 Aligned_cols=245 Identities=28% Similarity=0.456 Sum_probs=220.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++.+..+..+...+.++ |++.|+|||..++|+
T Consensus 190 Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGv~~~~~p~~~~~~~~~~~ls------~~g~~~pFd~~adG~~~g 263 (917)
T 2hg4_A 190 GPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMSSPGAFTEFRSQGGLA------ADGRCKPFSKAADGFGLA 263 (917)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSTHHHHHHTTSSCBC------TTSCCCTTBTTCCCBCBB
T ss_pred CCeEeecCCcHHHHHHHHHHHHHHHcCCCCEEEEeEeccccChhhhHhhhhccCcC------CccccCcccccccCCCCc
Confidence 79999999999999999999999999999999999999999998888888888876 568999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|++++++|+|++.++|+.+...+.|+..++.++++++|++||++|+||||||+|||||+.+|+
T Consensus 264 EGagavVL~~l~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~P~~~~q~~ai~~Al~~Agl~p~dId~veaHgtgT~~gD~ 343 (917)
T 2hg4_A 264 EGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDP 343 (917)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSSSCCCHHHHHHHHHHHHHHHTCCGGGCCEEECCCCCCTTHHH
T ss_pred ceEEEEEEeeHHHHHhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEeeccCCCccCcH
Confidence 67889999999999999999999998877778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-CCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccc-----c
Q 040515 149 VEATAIRTVFSDH-ATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLT-----A 222 (251)
Q Consensus 149 ~E~~a~~~~~~~~-~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~-----~ 222 (251)
+|..++.++|+.. ....+++++++|+++||+++|+|++++++++++|+++.|||++|+++|+|.++++..++. .
T Consensus 344 ~E~~al~~~fg~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~vl~L~~~~ipp~~~~~~~~p~i~~~~~~~~v~~~~~ 423 (917)
T 2hg4_A 344 IEVHALLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVMKAVLALRHGEMPRTLHFDEPSPQIEWDLGAVSVVSQAR 423 (917)
T ss_dssp HHHHHHHTTTTTSSCTTSCCEEECTHHHHCBCGGGTTHHHHHHHHHHHHHTEECCCTTCCSBCTTSCC---CCEECCSCE
T ss_pred HHHHHHHHHhccccCCCCceeccCcccceecchhhhHHHHHHHHHHHHhcCCcCCCCCCCCCCccCCccccceeecCCcc
Confidence 9999999999753 234578999999999999999999999999999999999999999999999976542211 1
Q ss_pred --CCCCCCcEEEEecccccceeeeeEeeecC
Q 040515 223 --SKDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 223 --~~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+....+|++++|||||||+|+|+||++++
T Consensus 424 ~w~~~~~~r~a~v~sfG~gG~Nah~vl~~~~ 454 (917)
T 2hg4_A 424 SWPAGERPRRAGVSSFGISGTNAHVIVEEAP 454 (917)
T ss_dssp ECCCCSSCCEEEEEEECTTSEEEEEEEEECC
T ss_pred cCCCCCCCCEEEEeeecCCCceEEEEeccCC
Confidence 11235789999999999999999999863
|
| >2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=377.66 Aligned_cols=245 Identities=29% Similarity=0.455 Sum_probs=221.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|+++||++|+++|++|+||++||||+|.++++..+..+..++.++ +++.|+|||..++|+
T Consensus 168 Gps~tv~taCsSsl~Al~~A~~~I~~G~~d~aLvgGve~~~~p~~~~~~~~~~~ls------~~g~~~~Fd~~adG~v~g 241 (915)
T 2qo3_A 168 GPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMATPGVFVDFSRQRALA------ADGRSKAFGAGADGFGFS 241 (915)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSSEEEEEEECCSSTHHHHHHHTTTCBC------SSCCCCTTBTTCCCBCBB
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHcCCCCEEEEeEehhhcCHHHHHHHhhhcccC------CCCCcccccCCCCceeec
Confidence 79999999999999999999999999999999999999999998888888888887 568999999999998
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcH
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~ 148 (251)
++++|+++|++++++|+|++.++|+.+...+.|+..++.++++++|++||++|+||||||+|||||+.+|+
T Consensus 242 EGagavVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~~~~~p~~~~~~~~i~~Al~~Agl~p~dId~ve~HgtgT~~gD~ 321 (915)
T 2qo3_A 242 EGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGDP 321 (915)
T ss_dssp CEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSCSSTTCCCHHHHHHHHHHHHHHTTCCGGGCCEEECCCCCCTTTHH
T ss_pred CceEEEEEeEhHHhhhCCCCeEEEEEEEEEecCCCccCCCCCCHHHHHHHHHHHHHHcCCCHHHCcEEEecCCCCccCCH
Confidence 67889999999999999999999998877778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccC-CCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCcc-----c-
Q 040515 149 VEATAIRTVFSDHA-TSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPL-----T- 221 (251)
Q Consensus 149 ~E~~a~~~~~~~~~-~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~-----~- 221 (251)
+|..++.++|+... ...+++++++|+++||+++|+|++++++++++|+++.|||++|+++|+|.++++..++ .
T Consensus 322 ~E~~al~~~f~~~~~~~~~~~vgs~K~~iGH~~~AaG~~~lik~~l~L~~~~ipp~~~~~~~~p~~~~~~~~~~~~~~~~ 401 (915)
T 2qo3_A 322 IEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHVEEPTPHVDWSSGGVALLAGNQ 401 (915)
T ss_dssp HHHHHHHHHTSSSCCTTSCEEEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCSSCSSBCTTSCCSSSSEEECSSCE
T ss_pred HHHHHHHHHhccccCCCCcccccCcccceeCCccccchHHHHHHHHHHhcCCCCCCCCCCCCCcccccccCceeeecCCc
Confidence 99999999997532 3457999999999999999999999999999999999999999999999988653221 0
Q ss_pred -cCCCCCCcEEEEecccccceeeeeEeeecC
Q 040515 222 -ASKDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 222 -~~~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
.++...+|++++|||||||+|+|+||++++
T Consensus 402 ~w~~~~~~r~a~v~sfG~gG~Nah~vl~~~~ 432 (915)
T 2qo3_A 402 PWRRGERTRRAAVSAFGISGTNAHVIVEEAP 432 (915)
T ss_dssp ECCSSSSCCEEEEEEECTTSEEEEEEEEECC
T ss_pred ccccCCCCcEEEEeeecCCCceEEEEEeecc
Confidence 112345789999999999999999999863
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=409.05 Aligned_cols=239 Identities=25% Similarity=0.371 Sum_probs=214.1
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||++||+++|+||++||++|+++|++|+||++||||++.+++|..+..|..++.++ |++.|+|||..++||
T Consensus 152 Gps~tv~tACsSsl~Al~~A~~~l~~g~~d~al~gG~~~~~~p~~~~~~~~~~~ls------~~g~c~~Fd~~adG~~~g 225 (2512)
T 2vz8_A 152 GPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLGMLS------QDGTCRSFDAEGTGYCRA 225 (2512)
T ss_dssp SCEEEEECTTSTHHHHHHHHHHHHHTSSCSEEEEEEEECCCCHHHHHHHHHTTCBC------TTCSCCSSSTTCCCBCBB
T ss_pred CCceeeccHhHHHHHHHHHHHHHHHcCCCCeeEEeEeccccCHHHHHHHccCCCCC------CCCCCCCCCCCCCCccee
Confidence 89999999999999999999999999999999999999999999999999999998 669999999999999
Q ss_pred ---------chhhhhhcCCeEEEEEeeeeecCCCCC-CCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ---------ELEHAKKRGAKIYAEVRGYGMSGDAHH-ITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ---------~~~~A~~~g~~~~a~i~g~~~~~~~~~-~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
++++|+ +||++|+|+++++||.+ .....|++.+++++|++||++||++|+||+|||+|||||+.+|
T Consensus 226 EG~~~~vLk~l~~A~----~i~a~i~g~~~n~dg~~~~~~t~P~~~~q~~~i~~al~~ag~~p~~i~yveaHGTgT~~gD 301 (2512)
T 2vz8_A 226 EAVVAVLLTKKSLAR----RVYATILNAGTNTDGSKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGD 301 (2512)
T ss_dssp CEEEEEEEEEGGGCS----CCSEEEEEEEEEECCCCTTCSSSCCHHHHHHHHHTTSGGGSSCTTSCCEEECCCCCCTTHH
T ss_pred eeEEEEEEEEHHHCC----cccEEEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCHHHCCEEEeecCCCCCCC
Confidence 556664 59999999999999963 3455678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC-CCCCc---cccC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN-DNFMP---LTAS 223 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~-~~~~~---~~~~ 223 (251)
++|+.|+.++|+... ..+++|+|+|+++||+++|+|+++++|++++|+++.|||++|+++|+|.++ ++..+ ..+.
T Consensus 302 ~~E~~al~~~f~~~~-~~~~~igS~Ks~iGH~~~AaG~~~~ik~~l~l~~~~ipp~~~~~~~~p~~~~~~~~~~~~~~~~ 380 (2512)
T 2vz8_A 302 PQELNGIVNALCATR-REPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPALQDGRLQVVDRP 380 (2512)
T ss_dssp HHHHHHHHHHHCSCS-SSCCEEECHHHHHCBCGGGHHHHHHHHHHHHHTTTBCCCCSSCCSCCTTSSSSSSSSCEECCSC
T ss_pred HHHHHHHHHHhcccC-CCCceeecccccccccccccchhHHHHHHHHHHCCCcCCCCCCCCCCccccccccCceEecCCC
Confidence 999999999998532 347999999999999999999999999999999999999999999999986 43111 0223
Q ss_pred CCCCCcEEEEecccccceeeeeEeeec
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
++.+.+++++|||||||+|+|+||+++
T Consensus 381 ~~~~~~~a~vnsfG~gG~Nah~il~~~ 407 (2512)
T 2vz8_A 381 LPIRGGNVGINSFGFGGSNVHVILQPN 407 (2512)
T ss_dssp CBCCSCCEEEEEEETTTEEEEEEEEEC
T ss_pred ccCCCCeEEEeccCCCCceeEEEEccC
Confidence 333456899999999999999999976
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=370.33 Aligned_cols=249 Identities=26% Similarity=0.286 Sum_probs=216.9
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccc-----cCCCCCCcccccccCCC
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFDCGRD 75 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~f~~~~~ 75 (251)
||++|++++|+|++.||+.|+++|++|+||++||||+|. +.+.....|..++.++.. .+.+|++.|+||+..++
T Consensus 1271 GP~~tv~tACASsl~Al~~A~~~I~sG~advalvGGvd~-~~~~~~~~f~~m~als~~~de~a~g~~p~~~~RPfd~~r~ 1349 (1878)
T 2uv9_A 1271 GPIKTPVGACATAVESLDVGYDTIMQGKARVCLVGGFDD-FQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTSTTRN 1349 (1878)
T ss_dssp CCBCCBCCGGGHHHHHHHHHHHHHTTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHTTTCCTTSSCCSSBTTCC
T ss_pred CCeEEEcCcchHHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhhcCCCcccCcCCCccCCC
Confidence 899999999999999999999999999999999999998 678888889888888742 24568899999999999
Q ss_pred cc------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCC-h------------------------------
Q 040515 76 GF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID-G------------------------------ 112 (251)
Q Consensus 76 g~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~-~------------------------------ 112 (251)
|| +++.|+++|.+||++|+|+++++|+.+...+.|. +
T Consensus 1350 Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~~t~ar~~~~~~ps~~~~~~~r~~~~~~~~ 1429 (1878)
T 2uv9_A 1350 GFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPSPLLDIKYRRRQLELRR 1429 (1878)
T ss_dssp CBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCSSCCCSCGGGGGCCCCCSSCCGGGSHHHHHHHHHHHH
T ss_pred CCcccceeEEEEEeeHHHHHHCCCceEEEEEEEEEecCCCccCCCCCCcchhhhhhhccccCCCcccchHHHHHHHHHHH
Confidence 99 7789999999999999999999999754444331 0
Q ss_pred ------------------------------------HHHH-------------------------------HHHHHHHHH
Q 040515 113 ------------------------------------KGAI-------------------------------LAMTRALKQ 125 (251)
Q Consensus 113 ------------------------------------~~~~-------------------------------~a~~~al~~ 125 (251)
..+. .++++||++
T Consensus 1430 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~Q~~~~~i~~~~~~q~~~a~~~~g~~~~~~~~~~~~ir~ALa~ 1509 (1878)
T 2uv9_A 1430 QQIKQWKESEYLYLQEEVAAIKSQRSEEDGPFDETAYLRERTEHIEREARRQEAEAQTSFGNEFWRRDSRIAPLRGALAT 1509 (1878)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTCTTSCHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhHHHHhhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHH
Confidence 0122 789999999
Q ss_pred cCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhc--cCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCc
Q 040515 126 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSD--HATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLT 203 (251)
Q Consensus 126 Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~--~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~ 203 (251)
+|++++||||||+|||||+.+|++|..+|.++|+. ...+.++++++.|+++||+.||+|+.++++++++|++|.|||+
T Consensus 1510 aGl~~~DId~veaHGTgT~~gD~~E~~al~~~f~~~~r~~~~pl~v~s~KsliGH~~gAAGa~~li~~l~~L~~g~iPp~ 1589 (1878)
T 2uv9_A 1510 WGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQKYLTGHPKGAAGAWMLNGCLQVLNTGIVPGN 1589 (1878)
T ss_dssp TTCCGGGEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCTTCHHHHHHHHHHHHHTTCEECCC
T ss_pred cCCCHHHeeEEEEcCCCCcccCHHHHHHHHHHHhhcCCCCCCceeEEecccccCChHhHhhHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999999999985 3345679999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-CCCCccc-cC-CCCCCcEEEEecccccceeeeeEeeec
Q 040515 204 LNLAKPDPIFN-DNFMPLT-AS-KDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 204 ~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+|++.|+|.++ ++.+.+. +. +..+++.+++|||||||+|+|+||+++
T Consensus 1590 ~n~d~~dp~i~~~~~v~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p 1639 (1878)
T 2uv9_A 1590 RNADNVDKVMEQFDYIVYPSRSIKTDGIKAFSVTSFGFGQKGAQAIGVHP 1639 (1878)
T ss_dssp TTCCSBCGGGGGCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECT
T ss_pred CCCCCCCCccccccccccccccccCCCCCEEEEccCCCCCeeEEEEEecC
Confidence 99999999984 6654321 21 224689999999999999999999976
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=367.05 Aligned_cols=249 Identities=25% Similarity=0.313 Sum_probs=215.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccc-----cCCCCCCcccccccCCC
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFDCGRD 75 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~f~~~~~ 75 (251)
||+++++++|+||+.||+.|+++|++|+||++||||+|. +++..+..|..++.++.. .+.+|++.|+||+..++
T Consensus 1296 GP~~tv~tACASsl~Al~~A~~~I~sG~advaLvGGvd~-~~~~~~~~f~~m~als~~~~e~~~g~~p~~~~RPfd~~r~ 1374 (1887)
T 2uv8_A 1296 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDD-FQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRN 1374 (1887)
T ss_dssp SCCCCCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCHHHHHHTTCCGGGSCCTTBTTCC
T ss_pred cceEEeecccccHHHHHHHHHHHHHcCCCCEEEEeeecc-CChHHHHHHHHhhhhccchhhhcccCCCccCcCCCcccCC
Confidence 899999999999999999999999999999999999998 678788889999988742 23457899999999999
Q ss_pred cc------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCC------------------hH------------
Q 040515 76 GF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID------------------GK------------ 113 (251)
Q Consensus 76 g~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~------------------~~------------ 113 (251)
|| +++.|+++|.+||++|+|+++++|+.+...+.|. ..
T Consensus 1375 Gfv~gEGag~vVL~~~~~A~~~G~~I~avI~g~a~~~Dg~~~s~paPg~G~lt~ar~~~G~gt~ps~~ld~~~r~~ql~~ 1454 (1887)
T 2uv8_A 1375 GFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVT 1454 (1887)
T ss_dssp SBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCSCSCTTCCCSGGGGGGCCCCSCCSSCCGGGCHHHHHHHHHH
T ss_pred CcccccceEEEEEccHHHHHHCCCceEEEEeeeEEecCCccccCCCCCccccccccccccccCCCCcccchHHHHHHHHH
Confidence 98 7789999999999999999999998754433321 10
Q ss_pred -------------------------------HH-------------------------------HHHHHHHHHHcCCCCC
Q 040515 114 -------------------------------GA-------------------------------ILAMTRALKQSGLQSH 131 (251)
Q Consensus 114 -------------------------------~~-------------------------------~~a~~~al~~Agi~~~ 131 (251)
.+ ..++++||+++||+|+
T Consensus 1455 ~~~~i~~~~~~~~~~l~~~~~~~g~~~~~~~~Qe~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~air~ALa~AGl~p~ 1534 (1887)
T 2uv8_A 1455 REAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTID 1534 (1887)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTCSSSCHHHHHHHTTTCCGG
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccchhhchHHHHHHHHHHHHcCCCHH
Confidence 11 3689999999999999
Q ss_pred CccEEEecCCCCcCCcHHHHHHHHHHhhc--cCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCC
Q 040515 132 QVDYVNAHATSTPLGDTVEATAIRTVFSD--HATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP 209 (251)
Q Consensus 132 dId~i~~h~~gt~~~D~~E~~a~~~~~~~--~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~ 209 (251)
||||||+|||||+.+|++|..+|.++|+. ...+.++++++.|+++||+.||+|+.++++++++|+++.|||++|++.|
T Consensus 1535 DId~veaHGTgT~~gD~~E~~Al~~~f~~~gr~~~~pl~v~s~KsliGH~~gAAGa~~li~~ll~L~~g~iPpt~n~d~~ 1614 (1887)
T 2uv8_A 1535 DLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNV 1614 (1887)
T ss_dssp GEEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCTTCCEEEECTHHHHCBCGGGHHHHHHHHHHHHHTTCEECCCTTCSSB
T ss_pred HceEEEecCCCCcccCHHHHHHHHHHHhhhccCCCCcEEEEecccceechHHHHhHHHHHHHHHHHHhCCcCCcCCCCCC
Confidence 99999999999999999999999999975 3334579999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCcc-ccCCC-CCCcEEEEecccccceeeeeEeeec
Q 040515 210 DPIFN-DNFMPL-TASKD-MPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 210 ~~~~~-~~~~~~-~~~~~-~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+|.++ ++.+.+ .+..+ .+++++++|||||||+|+|+||+++
T Consensus 1615 dp~l~~~~~l~~~~~~~~~~~~r~a~v~SFGFGG~NahvIle~p 1658 (1887)
T 2uv8_A 1615 DKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHP 1658 (1887)
T ss_dssp CGGGGGCTTEECCSSCEECSCCCEEEEEEEETTTEEEEEEEECT
T ss_pred CCccccccccccccccccCCCCCEEEEccCCCCCccEEEEEecC
Confidence 99984 554421 12212 3689999999999999999999976
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=365.95 Aligned_cols=250 Identities=25% Similarity=0.304 Sum_probs=213.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccc-----cCCCCCCcccccccCCC
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK-----YNGTPQEASRPFDCGRD 75 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~f~~~~~ 75 (251)
||+++++++|+|++.||+.|+++|++|+||++||||+|.+ ++.....|..++.++.. .+.+|++.|+||+..++
T Consensus 1097 GPs~TVdtACASSL~AL~lA~~aIrsGeaDvaLVGGvE~m-sp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~~cRPFd~~rd 1175 (1688)
T 2pff_A 1097 GPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDF-QEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRN 1175 (1688)
T ss_dssp CCCCCCCCTTTTTHHHHHHHHHHHHTTTCSCBCCCCCCCC-CTTTTTTTTTTSCSCCTTTTTTSSCCSSSSCCSSSSSCC
T ss_pred CCeEEecCCCchHHHHHHHHHHHHHCCCCCEEEEeeeccC-CHHHHHHHHhccccccChhhhhcCCChhhccCcCccCCC
Confidence 8999999999999999999999999999999999999984 66666778888887743 13458899999999999
Q ss_pred cc------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCC------------------hH------------
Q 040515 76 GF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHID------------------GK------------ 113 (251)
Q Consensus 76 g~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~------------------~~------------ 113 (251)
|+ +++.|+++|.+||++|+|+++++|+.+...+.|. ..
T Consensus 1176 Gfv~GEGAGavVLesle~Al~~G~~IyAvI~GsavnsDg~~~SipAPg~GiLt~Ar~~~G~~taPSp~ld~~~R~rql~~ 1255 (1688)
T 2pff_A 1176 GFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVT 1255 (1688)
T ss_dssp CCCCCSCCEEEEEECSHHHHSSSCCCCCEECCCCCCCCCCCSSSCCCCSSSSSSSSSCCCCSSCSSCCSCTTCCHHHHSH
T ss_pred CCccccceEEEEeCcHHHHHHCCCceEEEEEEEEEECCCCccCCCCCCCCccchhhhcccccCCCCcccChHHHHHHHHH
Confidence 98 7788999999999999999999998643322221 00
Q ss_pred -------------------------------HH-------------------------------HHHHHHHHHHcCCCCC
Q 040515 114 -------------------------------GA-------------------------------ILAMTRALKQSGLQSH 131 (251)
Q Consensus 114 -------------------------------~~-------------------------------~~a~~~al~~Agi~~~ 131 (251)
.+ ..++++||+++|++|+
T Consensus 1256 ~~~~i~~~~~~e~~~l~~e~~~~g~~~~~~~aQer~~~i~~~~~r~~~~~~~~~Gn~f~~~d~~~~aIr~ALa~AGLtpd 1335 (1688)
T 2pff_A 1256 REAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTID 1335 (1688)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCSSHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTSSSSSCTTCCSHHHHTTSSCSSTT
T ss_pred HHHHHHHHHHhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhccCCceecchHHHHHHHHHHHHcCCCHH
Confidence 11 3678999999999999
Q ss_pred CccEEEecCCCCcCCcHHHHHHHHHHhhcc--CCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCC
Q 040515 132 QVDYVNAHATSTPLGDTVEATAIRTVFSDH--ATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP 209 (251)
Q Consensus 132 dId~i~~h~~gt~~~D~~E~~a~~~~~~~~--~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~ 209 (251)
||||||+|||||+.+|++|..+|.++|+.. ..+.++++++.|+++||+.||+|+.++++++++|+++.|||++|++.|
T Consensus 1336 DIdyVEaHGTGT~lgD~iE~~AL~~af~~~gr~~g~pl~V~S~KsliGHp~GAAGa~~Lik~llaL~~G~IPptln~d~p 1415 (1688)
T 2pff_A 1336 DLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNV 1415 (1688)
T ss_dssp CCCCCCCCCCSCSSSSTTTTTTTGGGTGGGCCCTTCCCCCCCCTTTTCCCSSTHHHHHHHHHHHHSTTCCCCCCSCCSCC
T ss_pred HeeEEEEeCCCCccccHHHHHHHHHHHhhhCcCCCCeEEEEeChhhhcchHHHhhHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 999999999999999999999999999853 334579999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCcc-ccCCC-CCCcEEEEecccccceeeeeEeeecC
Q 040515 210 DPIFN-DNFMPL-TASKD-MPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 210 ~~~~~-~~~~~~-~~~~~-~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+|.++ ++.+.+ .+.++ .+++.+++|||||||+|+|+||++++
T Consensus 1416 dp~l~~~d~v~~p~~~~~~~~~r~AlVnSFGFGGtNAhvILe~p~ 1460 (1688)
T 2pff_A 1416 DKILEQFEYVLYPSKTLKTDGVRAVSITSFGFGQKGGQAIVVHPD 1460 (1688)
T ss_dssp CTTCCSSCCCCSCTTCCSSSSSSCCCCCCCCSTTCCCCCCEECSS
T ss_pred CCCCCcCCceeecCccccCCCCcEEEEeeECCCCeeEEEEEeCCC
Confidence 99984 554421 22222 36799999999999999999999864
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=374.87 Aligned_cols=249 Identities=25% Similarity=0.310 Sum_probs=216.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhccc-----ccCCCCCCcccccccCCC
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT-----KYNGTPQEASRPFDCGRD 75 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~f~~~~~ 75 (251)
||+++|+++|+||++||+.|+++|++|+||++||||+|. +++..+..|..++.++. ..+.+|+..|+|||..++
T Consensus 2731 GPs~tV~tACSSsl~Al~~A~~~IrsG~~d~aLaGGve~-ls~~~~~~f~~~~als~~~~~~~~~~sp~~~crpFd~~~d 2809 (3089)
T 3zen_D 2731 GAMVHPVGACATAAVSVEEGVDKIKLGKADLVIAGGFDD-LTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRL 2809 (3089)
T ss_dssp SCEECCBCTTCHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHHTCBCCHHHHHHTTCCTTTSCCSSBTTCC
T ss_pred CCceeeccchhhHHHHHHHHHHHHHCCCCCeeEEeeecc-cCHHHHHHHHHhhhhhcchhhhhccCCcccccCccccCCC
Confidence 799999999999999999999999999999999999999 78888888888888763 235678899999999999
Q ss_pred cc------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCCh-------HHHHHHHHHHHHHcCCCCCCccEE
Q 040515 76 GF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDG-------KGAILAMTRALKQSGLQSHQVDYV 136 (251)
Q Consensus 76 g~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~-------~~~~~a~~~al~~Agi~~~dId~i 136 (251)
|+ ++++|+++|++||++|.+.+.++|+.+...+.|.. .++.++++++|+++|++|+|||||
T Consensus 2810 G~v~GEGAgavVL~~~e~A~~~G~~I~avI~g~~~n~Dg~~~~~~aP~~g~~~a~~~~q~~ai~~AL~~AGl~p~DIdyV 2889 (3089)
T 3zen_D 2810 GFLEAQGGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAPGLGALGAARGGRESTLARSLAQLGVGADDIAVI 2889 (3089)
T ss_dssp CBCBBCEEEEEEEEEHHHHHHHTCCCCEEEEEEEEECCCCCCCSSCCCCGGGGGSTTGGGSHHHHHHHTTTCCGGGEEEE
T ss_pred CEEEeccceEEEEeeHHHHHhCCCceEEEEEEEEEecCCcccCccCCchhHHhHhhhhHHHHHHHHHHHcCCCHHHeeEE
Confidence 98 67889999999999999999999998766666542 356678999999999999999999
Q ss_pred EecCCCCcCCcHHHHH---HHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCC
Q 040515 137 NAHATSTPLGDTVEAT---AIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIF 213 (251)
Q Consensus 137 ~~h~~gt~~~D~~E~~---a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~ 213 (251)
|+|||||+.+|++|.. ++.+.|+... ..+++|++.|+++||+++|+|++++++++++|+++.|||++|++.|+|.+
T Consensus 2890 EaHGTGT~lgD~~E~~al~al~~~fg~~~-~~~~~v~s~Ks~iGH~~gAAG~~~lik~ll~L~~g~iPpt~~~~~~np~i 2968 (3089)
T 3zen_D 2890 SKHDTSTLANDPNETELHERIADSMGRAP-GNPLFIVSQKTLTGHAKGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDEL 2968 (3089)
T ss_dssp ECCCCCCTTHHHHHHHHHHHHHHHTTCCT-TCCEEEECSHHHHCBCSTTHHHHHHHHHHHHHHHCCBCCCTTCSSBCGGG
T ss_pred EEecCCcccccHHHHHHHHHHHHHhCccC-CCcceecccccccCCchhhhhHHHHHHHHHHHhcCccCCCCCCCCCCCCc
Confidence 9999999999999999 6677776432 24699999999999999999999999999999999999999999999988
Q ss_pred C----CCCCccc--cCCCCCCcEEEEecccccceeeeeEeeecC
Q 040515 214 N----DNFMPLT--ASKDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 214 ~----~~~~~~~--~~~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+ +.+.... .++..++|++++|||||||+|+|+||++++
T Consensus 2969 ~~~~~~~~~~~~~~w~~~~~~r~a~vnSfGfGG~NahvVle~~~ 3012 (3089)
T 3zen_D 2969 ATSGHFVWVREPLDLRGKFPLKAGLVTSLGFGHVSGLVALVHPE 3012 (3089)
T ss_dssp GGCSSEEECSSCBCCCTTSCCCEEEEEEEETTTEEEEEEEECGG
T ss_pred cccCCeeecCCCccCCCCCCCCEEEEccccCCCCeEEEEEecCc
Confidence 6 1111111 112345799999999999999999999874
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=218.77 Aligned_cols=210 Identities=25% Similarity=0.356 Sum_probs=160.0
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHH--------------------H----H--hhhhh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA--------------------G----F--CKSRA 54 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~--------------------~----~--~~~~~ 54 (251)
||+++|+++|+|++.||..|+++|++|++|++||+|+|.++..+... . + ..++.
T Consensus 83 ~p~~~v~~aCaSg~~Ai~~A~~~I~~G~~d~vlagG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~ 162 (397)
T 1wl4_A 83 VPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGI 162 (397)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESTTCCEECCCSSCCSSSCCCCEEHHHHHTTBCTTTCCBHHH
T ss_pred ccEEEecCcChhHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccccccCcccccchhccccccCccccchHHH
Confidence 68999999999999999999999999999999999999876421100 0 0 11121
Q ss_pred ccc---------------------------------------------------ccCCCCCC--------cccc-cccCC
Q 040515 55 LTT---------------------------------------------------KYNGTPQE--------ASRP-FDCGR 74 (251)
Q Consensus 55 l~~---------------------------------------------------~~~~~~~~--------~~~~-f~~~~ 74 (251)
+++ ..+..+.. .++| |+.++
T Consensus 163 ~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvfd~~~ 242 (397)
T 1wl4_A 163 TAENVAKKWQVSREDQDKVAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDG 242 (397)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHTSCCSSCCSS
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHhhHhcCCcccceeeeeeccCCCceeeccccccCCCCCHHHHhcCCCccCCCC
Confidence 110 00011111 4888 99877
Q ss_pred Ccc-------------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 040515 75 DGF-------------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 135 (251)
Q Consensus 75 ~g~-------------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~ 135 (251)
+|+ +++.|++++.+++++|+|++.+++ .|.+.+.++..+++++|+++|++|+||||
T Consensus 243 ~G~vt~~~~s~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~ 317 (397)
T 1wl4_A 243 TGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGV-----EPSIMGIGPIPAIKQAVTKAGWSLEDVDI 317 (397)
T ss_dssp CCCCCTTSBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGCCE
T ss_pred CCCEechhcCCccchhheeeEecHHHHHHcCCCccEEEEEEEEeec-----ChhhccchHHHHHHHHHHHcCCCHHHCCE
Confidence 776 668899999999999999998873 33444567789999999999999999999
Q ss_pred EEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCC
Q 040515 136 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND 215 (251)
Q Consensus 136 i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 215 (251)
||+|...+. ...++.+.|+-.. .++++++.|.++||++||+|+.++++++++|+++
T Consensus 318 ie~~d~f~~-----~~l~~~~~lg~~~--~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~----------------- 373 (397)
T 1wl4_A 318 FEINEAFAA-----VSAAIVKELGLNP--EKVNIEGGAIALGHPLGASGCRILVTLLHTLERM----------------- 373 (397)
T ss_dssp EEECCSBHH-----HHHHHHHHHTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred EEEecccHH-----HHHHHHHHcCCCC--cCcCCCcCccccCCChhhhHHHHHHHHHHHHhhc-----------------
Confidence 999854422 2234666666422 3578899999999999999999999999999973
Q ss_pred CCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 216 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 216 ~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.++++++.++.||.+.++||++.
T Consensus 374 -----------~~~~gl~~~~~ggG~~~a~~~e~~ 397 (397)
T 1wl4_A 374 -----------GRSRGVAALCIGGGMGIAMCVQRE 397 (397)
T ss_dssp -----------TCCEEEEEEEETTTEEEEEEEEEC
T ss_pred -----------CCCEEEEEEecccchheEEEEEeC
Confidence 246899988888999999999873
|
| >1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-30 Score=220.51 Aligned_cols=212 Identities=20% Similarity=0.309 Sum_probs=159.8
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcC-hhhHH-----HHh--------hhhh----------cc
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALSMA-----GFC--------KSRA----------LT 56 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~-~~~~~-----~~~--------~~~~----------l~ 56 (251)
||+++|+++|+|++.||++|+++|++|++|++||+|+|.++. |.... .+. .++. ++
T Consensus 85 ~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~g~s 164 (390)
T 1wdk_C 85 SAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGIS 164 (390)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCTTTTBCCCGGGGGTSCGGGGSHHHHHHHHHHHHTCC
T ss_pred ccEEEEcccchhHHHHHHHHHHHHHcCCCCEEEEeeeeccccCCcccccccCccccccCCcchhHHHHHHHHHHHHhCCC
Confidence 689999999999999999999999999999999999997643 21100 000 0111 11
Q ss_pred cc---------------------cCC--CC------CCcccccccC---------------------CCcc---------
Q 040515 57 TK---------------------YNG--TP------QEASRPFDCG---------------------RDGF--------- 77 (251)
Q Consensus 57 ~~---------------------~~~--~~------~~~~~~f~~~---------------------~~g~--------- 77 (251)
+. +.. .| ...++|||.+ ++|+
T Consensus 165 ~e~~~~~a~~s~~~a~~a~~~g~~~~ei~p~~~~~~~~~~~~fd~d~~~r~~~t~e~~~~~~~i~~p~~G~vt~~~~~~~ 244 (390)
T 1wdk_C 165 REQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTAGTSSQI 244 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEECTTCCEEEECSCTTCCTTCCHHHHHTSCCSSCTTTCCCCGGGBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccceeeeeeccCCCcceeeccccccCCCCCHHHHhcCCCcccCCCCcEechhcCcc
Confidence 10 000 01 0112678777 6776
Q ss_pred ----------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 78 ----------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 78 ----------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
+++.|++++.+++++|+|++.+++. |.+...++..+++++|+++|++|+||||||+|++++.
T Consensus 245 ~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ve~~d~f~~--- 316 (390)
T 1wdk_C 245 TDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVD-----PAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAA--- 316 (390)
T ss_dssp EEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECC-----GGGGGGTHHHHHHHHHHHHTCCGGGCCEEEECCSBHH---
T ss_pred cchhheeEEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHHHcCCChhhCcEEEeccCCHH---
Confidence 6688999999999999999988743 3334556789999999999999999999999988765
Q ss_pred HHHHHHHHHHhhccCC-CCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCC
Q 040515 148 TVEATAIRTVFSDHAT-SGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM 226 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~-~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (251)
|..++.+.|+-... ..++.+++.|.++||++||+|+.++++++++|+++
T Consensus 317 --~~~~~~~~lg~~~~~~~~vn~~gg~~~~GHp~gasG~~~~~~~~~~L~~~---------------------------- 366 (390)
T 1wdk_C 317 --QALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN---------------------------- 366 (390)
T ss_dssp --HHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred --HHHHHHHHcCCCCCCCCcCCCCcCcccccCCcchhHHHHHHHHHHHHhhc----------------------------
Confidence 66666666653210 12467788888999999999999999999999973
Q ss_pred CCcEEEEecccccceeeeeEeeec
Q 040515 227 PISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 227 ~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.+++++++++.||.+.++||++.
T Consensus 367 ~~~~gl~~~~~ggG~~~a~~~~~~ 390 (390)
T 1wdk_C 367 GGTFGLSTMCIGLGQGIATVFERV 390 (390)
T ss_dssp TCSEEEEEEEETTTEEEEEEEECC
T ss_pred CCCEEEEEecccchheEEEEEEeC
Confidence 246788888888999999999873
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-29 Score=217.16 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=154.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcC-hhh--------------H----------HHHh--h--
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID-ALS--------------M----------AGFC--K-- 51 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~-~~~--------------~----------~~~~--~-- 51 (251)
+|+++|+++|+|+++||..|+++|++|++|++||+|+|.++. |.. + ..+. .
T Consensus 80 ~p~~~v~~aCas~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~ 159 (401)
T 1ulq_A 80 VAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAPYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYG 159 (401)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCCEEECCCCSSSCCSCEEEEETTSSCCSCCHHHHHHSC
T ss_pred ccEeeccccchHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCcccccccccccccCcccccchhhhccccccccccccc
Confidence 589999999999999999999999999999999999997655 210 0 0110 0
Q ss_pred ---hhhc---------------------cc----------ccCC----------------CCCC------------cccc
Q 040515 52 ---SRAL---------------------TT----------KYNG----------------TPQE------------ASRP 69 (251)
Q Consensus 52 ---~~~l---------------------~~----------~~~~----------------~~~~------------~~~~ 69 (251)
++.. ++ .... ++++ .++|
T Consensus 160 ~~~~~~~a~~~~~~~g~sre~~~~~a~~s~~~A~~~~~ag~~~~ei~P~~~~~~~~~~~~~~d~~~r~~~t~e~~~~~rp 239 (401)
T 1ulq_A 160 TESMGETAENLAEMYGIRREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEEILVEQDEGPRRDTSLEKLAALRP 239 (401)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEETTEEEEECSCSCCCTTCCHHHHHHSCB
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhcCCcccceeceeecCCCCceeeccccccCCCCCHHHHhhCCC
Confidence 1110 00 0000 0111 2355
Q ss_pred -cccCCCcc-------------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 040515 70 -FDCGRDGF-------------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 129 (251)
Q Consensus 70 -f~~~~~g~-------------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~ 129 (251)
|+. +|+ +++.|+++|.+++++|+|++.+++.. ...+.+...+++++|+++|++
T Consensus 240 if~~--~G~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~p-----~~~~~~~~~a~~~al~~Agl~ 312 (401)
T 1ulq_A 240 VFRE--GGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPP-----RIMGIGPVPATRKALERAGLS 312 (401)
T ss_dssp SSST--TCSCBGGGBCCCEEEEEEEEEEEHHHHHHTTCCCSEEEEEEEEEECCG-----GGGGGTHHHHHHHHHHHTTCC
T ss_pred ccCC--CCCeechhcCCccchheEEEEecHHHHHHcCCCceEEEEEEEEecCCc-----cccchhHHHHHHHHHHHcCCC
Confidence 664 332 77889999999999999999988642 223446689999999999999
Q ss_pred CCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCC
Q 040515 130 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP 209 (251)
Q Consensus 130 ~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~ 209 (251)
|+||||||+|++++.. |...++. |+-.....++.++..+..+|||++|+|+.++++++++|+++
T Consensus 313 ~~dId~ie~heafa~~----~l~~~~~-lg~~~~~~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~----------- 376 (401)
T 1ulq_A 313 FSDLGLIELNEAFAAQ----ALAVLRE-WSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRR----------- 376 (401)
T ss_dssp GGGCSEEEECCSBHHH----HHHHHHH-HTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHHcCEEEEecchHHH----HHHHHHH-cCCCCCCCccCCCCcccccCCCcchHHHHHHHHHHHHHhhc-----------
Confidence 9999999999877653 6666655 33211122455555555799999999999999999999984
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 210 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.++++++++++||.+.++||+++
T Consensus 377 -----------------~~~~gl~~~~~ggG~~~a~v~~~~ 400 (401)
T 1ulq_A 377 -----------------KVQFGLATMCIGVGQGIAVVVEGM 400 (401)
T ss_dssp -----------------TCSEEEEEEEETTTEEEEEEEEEC
T ss_pred -----------------CCCEEEEEeecCCcccEEEEEEeC
Confidence 257899999999999999999985
|
| >2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-28 Score=213.73 Aligned_cols=208 Identities=21% Similarity=0.301 Sum_probs=154.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhH----H--------HHh--------------hhhh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM----A--------GFC--------------KSRA 54 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~----~--------~~~--------------~~~~ 54 (251)
||+++|+++|+|++.||..|+++|++|++|++||+|+|.++..+.. . .+. .++.
T Consensus 80 ~p~~~v~~aCaSgl~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (392)
T 2vu1_A 80 ATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAPHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGT 159 (392)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCCEEECCTTCCCSSCEEEEEHHHHHHTBCTTTCCBHHH
T ss_pred ceEEEecccchHHHHHHHHHHHHHHCCCCCEEEEEEEeccCCCccccccccccccCcccccchhhhcccccccccchHHH
Confidence 6899999999999999999999999999999999999986542110 0 000 1111
Q ss_pred ccc----ccCCC-----------------------------CC-----CcccccccC--------------------CCc
Q 040515 55 LTT----KYNGT-----------------------------PQ-----EASRPFDCG--------------------RDG 76 (251)
Q Consensus 55 l~~----~~~~~-----------------------------~~-----~~~~~f~~~--------------------~~g 76 (251)
+++ .++.+ |. ..++|||.+ ++|
T Consensus 160 ~a~~~~~~~g~s~e~~~~~a~~s~~~A~~~~~ag~~~~ei~p~~~~~~~~~~~f~~d~~~r~~~t~e~~~~~~~v~~~~g 239 (392)
T 2vu1_A 160 TAENVAKQWQLSRDEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVKGRKGDITVDADEYIRHGATLDSMAKLRPAFDKEG 239 (392)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEECCTTCCEEECSCSSCCTTCCHHHHHTCCCSSCTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeeeeeeccCCCceeeccccccCCCCCHHHHhcCCCccCCCC
Confidence 110 00000 10 125677766 556
Q ss_pred c-------------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 77 F-------------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 77 ~-------------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
+ +++.|++++.+++++|+|++.+++ .|.+...++..+++++|+++|++|+||||||
T Consensus 240 ~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~dId~ie 314 (392)
T 2vu1_A 240 TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGV-----DPKVMGTGPIPASRKALERAGWKIGDLDLVE 314 (392)
T ss_dssp CCCSSSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGCSEEE
T ss_pred CeeCcccCCccChhheeeEecHHHHHhcCCCccEEEEEEEEeec-----ChhhcchhHHHHHHHHHHHcCCCHHHcCEEE
Confidence 5 667899999999999999998764 2333455678999999999999999999999
Q ss_pred ecCCCCcCCcHHHHHH--HHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATA--IRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND 215 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a--~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 215 (251)
+|.. .|..+ +.+.|+-.. .++.+++.|.++||+++|+|+.++++++++|+++
T Consensus 315 ~~d~-------f~~~~l~~~~~lg~~~--~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~----------------- 368 (392)
T 2vu1_A 315 ANEA-------FAAQACAVNKDLGWDP--SIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR----------------- 368 (392)
T ss_dssp ECCS-------BHHHHHHHHHHHCCCG--GGBSTTCCHHHHCCCGGGHHHHHHHHHHHHHHHH-----------------
T ss_pred eccc-------cHHHHHHHHHHcCCCc--ccCCCCccHhhhCCChhhHHHHHHHHHHHHHhcc-----------------
Confidence 9943 35555 345555321 2577888899999999999999999999999873
Q ss_pred CCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 216 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 216 ~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.++++++....||.+.++||++.
T Consensus 369 -----------~~~~gl~~~~~ggG~~~a~~~e~~ 392 (392)
T 2vu1_A 369 -----------GARKGLATLCIGGGMGVAMCIESL 392 (392)
T ss_dssp -----------TCSEEEEEEEETTTEEEEEEEECC
T ss_pred -----------CCCEEEEEEecccchheEEEEEeC
Confidence 246888877666899999999873
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-28 Score=209.31 Aligned_cols=208 Identities=23% Similarity=0.293 Sum_probs=159.1
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh---------H------------HHH---h------
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS---------M------------AGF---C------ 50 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~---------~------------~~~---~------ 50 (251)
+|+++|+++|+|+++||..|+++|++|++|++||+|+|.++..+. + +.+ .
T Consensus 108 ~p~~~v~~aCss~~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~a~~~g 187 (418)
T 2iik_A 108 VPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFG 187 (418)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTCC-----CCCTTGGGCHHHHGGGSCHHHHHHHHHHHTT
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHHCCCCCEEEEeccccCccCCccCCcccchhhhcccccccccccHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999998765211 0 000 0
Q ss_pred ---------------------hhhhccccc-----------------CCCCCCcccc-------------cccCC-----
Q 040515 51 ---------------------KSRALTTKY-----------------NGTPQEASRP-------------FDCGR----- 74 (251)
Q Consensus 51 ---------------------~~~~l~~~~-----------------~~~~~~~~~~-------------f~~~~----- 74 (251)
..+.+...- ..++++.++| |+.++
T Consensus 188 itre~~~~~a~~s~~~A~~a~~~g~~~~ei~pv~~~~~~~~~~~~~~~~~~d~~~rp~~t~e~l~~~~~vfd~~~~~t~~ 267 (418)
T 2iik_A 188 ISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAG 267 (418)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEEEECTTSCEEEEEECSCTTCCTTCCHHHHHHCCCSSSTTCCCCST
T ss_pred CCHHHHHHHHHHHHHHHHhChhcCccccceeeeeeccccccCcccceeeecccCcCCCCCHHHHhhCCCcccCCCceeec
Confidence 011111000 0112457787 88654
Q ss_pred Ccc------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCC
Q 040515 75 DGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATS 142 (251)
Q Consensus 75 ~g~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~g 142 (251)
+++ +++.|+++|.+|+++|+|++.+.. .|...+.+...+++++|++||++|+||||||+|+++
T Consensus 268 d~~~~~DGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~vE~h~af 342 (418)
T 2iik_A 268 NSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGV-----PPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAF 342 (418)
T ss_dssp TBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEEC-----CGGGGGGHHHHHHHHHHHHHTCCGGGEEEEEECCSB
T ss_pred cccCCCCCceEEEEecHHHHHhcCCCceEEEEEEEeccC-----CchhcchhHHHHHHHHHHHcCCCHHHCCeeeeeccc
Confidence 555 778899999999999999988753 233345577889999999999999999999999755
Q ss_pred CcCCcHHHHHHHHHHhhccCCCCceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCcc
Q 040515 143 TPLGDTVEATAIRTVFSDHATSGSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPL 220 (251)
Q Consensus 143 t~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~ 220 (251)
+ ..|.+|.+++.. . +.||+..++ ++|||+||+|+.++++++++|+++-
T Consensus 343 ~-~~~~~~~~~lg~--~------~~~vN~~GG~~a~GHp~GAsG~~~~~~~~~~L~~~~--------------------- 392 (418)
T 2iik_A 343 A-SQAAYCVEKLRL--P------PEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRG--------------------- 392 (418)
T ss_dssp H-HHHHHHHHHHTC--C------GGGBCTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred h-HHHHHHHHHcCC--C------ccccCCCCCeeeecCChhhhHHHHHHHHHHHHHhcC---------------------
Confidence 4 567777777631 1 257888885 6899999999999999999998721
Q ss_pred ccCCCCCCc-EEEEecccccceeeeeEeeec
Q 040515 221 TASKDMPIS-AALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 221 ~~~~~~~~~-~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+ +++++.++.||...++||+++
T Consensus 393 -------~~~~gl~~~c~ggG~g~a~~~e~~ 416 (418)
T 2iik_A 393 -------KRAYGVVSMCIGTGMGAAAVFEYP 416 (418)
T ss_dssp -------SCEEEEEEEEETTTEEEEEEEEEC
T ss_pred -------CCeeeEEEEeeccchhheEEEecc
Confidence 24 788888889999999999986
|
| >2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=209.37 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=152.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh----------HH-HHh-----hh------------
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS----------MA-GFC-----KS------------ 52 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~----------~~-~~~-----~~------------ 52 (251)
+|+++|+++|+|+++||..|+++|++|++|++||+|+|.++..+. +. .+. .+
T Consensus 109 ~p~~~v~~aCaSg~~Al~~A~~~I~sG~~d~vLvgG~e~~s~~p~~~~~~~~~~~~~~~~~~~~~~~mg~~A~~~~~~~g 188 (442)
T 2wu9_A 109 VAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFG 188 (442)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSCCCCCSCCCGGGGGCHHHHHTTSCHHHHHHHHHHHHT
T ss_pred ceEEEeCCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEeecCCCccccccccchhhhhccccccchhHHHHHHHHHHHHhC
Confidence 589999999999999999999999999999999999998654211 00 000 01
Q ss_pred -----------------------hhccccc--------C----------CCCCC------------cccc-cccCCCcc-
Q 040515 53 -----------------------RALTTKY--------N----------GTPQE------------ASRP-FDCGRDGF- 77 (251)
Q Consensus 53 -----------------------~~l~~~~--------~----------~~~~~------------~~~~-f~~~~~g~- 77 (251)
+.+...- + .+.++ .++| |+. +|+
T Consensus 189 isre~~~~~A~~s~~~A~~~p~ag~~~~ei~pv~~~~~~~~~~~~~~~~~~~De~~r~~~t~e~~~~~rpvfd~--~G~v 266 (442)
T 2wu9_A 189 VSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFKK--DGTT 266 (442)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEECTTTCCEEEEEECSCTTCCTTCCHHHHHTSCCSSCT--TCCC
T ss_pred CCHHHHHHHHHHHHHHHHhChhcccccccccceeeccccccccccCceeeecccCcCCCCCHHHHhcCCCccCC--CCCe
Confidence 1111000 0 00011 2345 663 333
Q ss_pred ------------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEec
Q 040515 78 ------------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAH 139 (251)
Q Consensus 78 ------------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h 139 (251)
+++.|+++|.+++++|+|++.+++. |...+.+...+++++|++||++++||||||+|
T Consensus 267 t~~n~s~~~DGAaavvL~s~e~A~~~g~~~~a~I~g~~~~~~~-----p~~~~~~~~~A~~~Al~~AGl~~~DId~iE~h 341 (442)
T 2wu9_A 267 TAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVD-----PAIMGIGPAVAIPAAVKAAGLELDDIDLFEIN 341 (442)
T ss_dssp CGGGBCCCEEEEEEEEEEEHHHHHHHTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHHHTTCCGGGCCEEEEC
T ss_pred echhcCCCCCceEEEEEeeHHHHHHcCCCceEEEEEEEEecCC-----chhcchHHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 6788999999999999999998762 33335577899999999999999999999999
Q ss_pred CCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCc
Q 040515 140 ATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMP 219 (251)
Q Consensus 140 ~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~ 219 (251)
++++.. |..+++. |+-.. .++.+...+..+|||+||+|+.++++++++|+++. |
T Consensus 342 ~aft~~----~l~~~~~-lG~~~--~~vN~~GG~~a~GHp~GAsG~~~~~~~v~~Lr~~~-~------------------ 395 (442)
T 2wu9_A 342 EAFASQ----FVYCRNK-LGLDP--EKINVNGGAMAIGHPLGATGARCVATLLHEMKRRG-K------------------ 395 (442)
T ss_dssp CSBHHH----HHHHHHH-HTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHHC-T------------------
T ss_pred CCChHH----HHHHHHH-hCCCC--CCcCCCccHhhcCCchhHHHHHHHHHHHHHHhccC-C------------------
Confidence 999974 8777755 43211 12333333337999999999999999999999853 0
Q ss_pred cccCCCCCCcEEEEe-cccccceeeeeEeeecC
Q 040515 220 LTASKDMPISAALSN-SFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 220 ~~~~~~~~~~~~lv~-~~g~gG~~~~~vl~~~~ 251 (251)
+.++++++ ++| ||.++++||++++
T Consensus 396 -------~~~~glas~~~G-GG~~~a~v~~~~~ 420 (442)
T 2wu9_A 396 -------DCRFGVVSMCIG-TGMGAAAVFERGD 420 (442)
T ss_dssp -------TCCEEEEEEEET-TTEEEEEEEEECS
T ss_pred -------CCCEEEEEeecc-cchheEEEEEecc
Confidence 35788864 566 8999999999874
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=205.33 Aligned_cols=132 Identities=22% Similarity=0.334 Sum_probs=112.2
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|+|++.+++ .|.+.+.++..+++++|+++|++|+||||||+|++++ +|..++.+.
T Consensus 265 s~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~Agl~~~dId~ve~~d~f~-----~~~~~~~~~ 334 (396)
T 4dd5_A 265 AKEKAEELGIEPLATIVSYGTAGV-----DPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFA-----AQSVAVIRD 334 (396)
T ss_dssp EHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGCSEEEECCSBH-----HHHHHHHHH
T ss_pred eHHHHHHCCCCceEEEEEEEEecC-----CCCcccHHHHHHHHHHHHHcCCCHHHcCEEEecChHH-----HHHHHHHHH
Confidence 778899999999999999998775 3344455688999999999999999999999997653 477777777
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-.. .++++++.|.++||+++|+|+.++++++++|+++ +.++++++.++
T Consensus 335 lg~~~--~~~n~~gg~~~~GH~~gasG~~~~~~~~~~L~~~----------------------------~~~~gl~~~c~ 384 (396)
T 4dd5_A 335 LNIDM--NKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR----------------------------DAKTGLATLCI 384 (396)
T ss_dssp HTCCT--TSBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH----------------------------TCSEEEEEEEE
T ss_pred hCCCC--CccCCCCchhhccCcHHHHHHHHHHHHHHHHHhc----------------------------CCCeEEEEEcc
Confidence 76432 3588899999999999999999999999999973 35789999999
Q ss_pred ccceeeeeEeee
Q 040515 238 FGGTNASLLFTK 249 (251)
Q Consensus 238 ~gG~~~~~vl~~ 249 (251)
.||...++|||+
T Consensus 385 ggG~g~a~~~e~ 396 (396)
T 4dd5_A 385 GGGMGTTLIVKR 396 (396)
T ss_dssp TTTEEEEEEEEC
T ss_pred cCCceeEEEEeC
Confidence 999999999985
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-27 Score=202.34 Aligned_cols=204 Identities=21% Similarity=0.314 Sum_probs=148.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh-------------------HHH-------------
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-------------------MAG------------- 48 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~-------------------~~~------------- 48 (251)
||+++|+++|+|+++||..|+++|++|++|++||+|+|.++.... +..
T Consensus 85 ~p~~~v~~aCaS~~~Al~~A~~~I~~G~~d~vlvgG~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 164 (395)
T 2ib8_A 85 TPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSC 164 (395)
T ss_dssp CCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGCCEEECSSBCCTTCEEEEEHHHHHTTEETTTTEEHHHH
T ss_pred ceEEEecccccHHHHHHHHHHHHHHCCCCCEEEEEeeecccCCcccccccccccccccccccccccccccccccchHHHH
Confidence 689999999999999999999999999999999999997554211 000
Q ss_pred ----Hhhhhhcccc---------------------cC-----------C------CCCCcccc--ccc---------CCC
Q 040515 49 ----FCKSRALTTK---------------------YN-----------G------TPQEASRP--FDC---------GRD 75 (251)
Q Consensus 49 ----~~~~~~l~~~---------------------~~-----------~------~~~~~~~~--f~~---------~~~ 75 (251)
....+. ++. +. . +.++.+++ |+. .++
T Consensus 165 a~~~~~~~g~-sre~~~~~A~~s~~~a~~a~~~~~f~~ei~p~~~~~~~~p~~~~~~D~~~r~~~~~~l~~l~~~f~~~~ 243 (395)
T 2ib8_A 165 AENTAKKLNI-ARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKEN 243 (395)
T ss_dssp HHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEECCTTSCCEEECSCSGGGSCCTTTGGGSCCTTCSSS
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHHHhcccccCcccceeeeeecccCCcceeeccccccccCCHHHHhcCCccccCCC
Confidence 011110 000 00 0 01112222 443 334
Q ss_pred cc-------------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEE
Q 040515 76 GF-------------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYV 136 (251)
Q Consensus 76 g~-------------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i 136 (251)
|+ +++.|++++.+++++|+|++..+ +.|...+.++..+++++|+++|++|+|||||
T Consensus 244 g~vt~~~~~~~~dGAaavvL~s~~~A~~~g~~~~a~I~g~~~~~-----~~p~~~~~~~~~a~~~al~~Agl~~~dId~i 318 (395)
T 2ib8_A 244 GTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAA-----VEPIDFPIAPVYAASMVLKDVGLKKEDIAMW 318 (395)
T ss_dssp CCCCTTTBCCCEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCcccccCCccccceeEEEEecHHHHHhcCCCccEEEEEEEEec-----cChhhccccHHHHHHHHHHHcCCCHHHcCEE
Confidence 54 67889999999999999999764 2233345578899999999999999999999
Q ss_pred EecCCCCcCCcHHHHHHHHHH--hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC
Q 040515 137 NAHATSTPLGDTVEATAIRTV--FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN 214 (251)
Q Consensus 137 ~~h~~gt~~~D~~E~~a~~~~--~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~ 214 (251)
|+| |..|..++..+ |+-.. .++.+++.|.++||++||+|+.++++++++|+++
T Consensus 319 e~~-------D~f~~~~l~~~e~lg~~~--~~vn~~gg~~~~GHp~gAsG~~~~~~~~~~L~~~---------------- 373 (395)
T 2ib8_A 319 EVN-------EAFSLVVLANIKMLEIDP--QKVNINGGAVSLGHPIGMSGARIVGHLTHALKQG---------------- 373 (395)
T ss_dssp EEC-------CSBHHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHSCTT----------------
T ss_pred EEc-------cccHHHHHHHHHHcCCCc--cccCCCcchhhcCCChhHHHHHHHHHHHHHHhhC----------------
Confidence 988 44477777776 55321 2577888899999999999999999999999741
Q ss_pred CCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 215 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
++++++.+..||...++|||+
T Consensus 374 --------------~~gl~~~~~ggG~g~a~~~~~ 394 (395)
T 2ib8_A 374 --------------EYGLASICNGGGGASAMLIQK 394 (395)
T ss_dssp --------------CEEEEEEEETTTEEEEEEEEE
T ss_pred --------------CceEEEEecccCHhheEEEEc
Confidence 345666666677888999986
|
| >1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=204.94 Aligned_cols=207 Identities=21% Similarity=0.285 Sum_probs=148.1
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh------------HH--HH-----hhhhhccc----
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS------------MA--GF-----CKSRALTT---- 57 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~------------~~--~~-----~~~~~l~~---- 57 (251)
+|+++|+++|+|+++||..|+++|++|++|++||+|+|.++..+. +. .+ ..++.+++
T Consensus 92 ~p~~~v~~aCasg~~Al~~A~~~I~~G~~d~vLv~G~e~~s~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~~~ 171 (393)
T 1afw_A 92 TPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAA 171 (393)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHHGGGSCTTCSCCCHHHHHCTTGGGGGSCHHHHHHHHHH
T ss_pred ceEEEEcCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEEecCCCcccccccccccchhhhhcccccccchhHHHHHHHHHH
Confidence 689999999999999999999999999999999999997543211 00 00 11111100
Q ss_pred ccC----------------------------------------CCCCC------------cccc-cccCCCcc-------
Q 040515 58 KYN----------------------------------------GTPQE------------ASRP-FDCGRDGF------- 77 (251)
Q Consensus 58 ~~~----------------------------------------~~~~~------------~~~~-f~~~~~g~------- 77 (251)
.++ -++++ .++| |+.++ |+
T Consensus 172 ~~g~sre~~~~~a~~s~~~A~~~~~ag~f~~ei~P~~~~~~~~~~~d~~~r~~~t~e~~~~~rpvf~~~~-G~vt~~~~~ 250 (393)
T 1afw_A 172 NFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDR-GTTTAGNAS 250 (393)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHTTSSTTTBCCEECTTSCEECSCSSCCSCCCHHHHHHCCBSCC----CCCBTTTBC
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhHhcCCccceeeeeeccCCceeccccccCCCCCHHHHhcCCCcccCCC-CCeechhcC
Confidence 000 01122 2445 76432 32
Q ss_pred ------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC
Q 040515 78 ------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL 145 (251)
Q Consensus 78 ------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~ 145 (251)
+++.|+++|.+++++|+|++.+++. |...+.+...+++++|+++|++|+||||||+|++++..
T Consensus 251 ~~~dGAaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~a~~~al~~Agl~~~dId~ve~h~~ft~~ 325 (393)
T 1afw_A 251 QVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVP-----PEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQ 325 (393)
T ss_dssp CBEEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECC-----GGGGGGHHHHHHHHHHHHHTCCGGGCSEEEECCSBHHH
T ss_pred cccchhheeeEecHHHHHHcCCCccEEEEEEEEeccC-----hhhcchhHHHHHHHHHHHcCCCHHHCCEEEEeccCHHH
Confidence 7788999999999999999998863 23334577899999999999999999999999999864
Q ss_pred CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 146 GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 146 ~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
|...++. |+-.. .++.++..+..+|||+||+|+.++++++++|+++-
T Consensus 326 ----~l~~~~~-lg~~~--~~vn~~Gg~~a~GHp~gAsG~~~~~~~~~~L~~~~-------------------------- 372 (393)
T 1afw_A 326 ----ALYCIHK-LGIDL--NKVNPRGGAIALGHPLGCTGARQVATILRELKKDQ-------------------------- 372 (393)
T ss_dssp ----HHHHHHH-HTCCG--GGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCTTC--------------------------
T ss_pred ----HHHHHHH-hCCCC--cCcCCCCChhhcCCchhhHHHHHHHHHHHHHhhcC--------------------------
Confidence 7776655 33211 12333334447999999999999999999998731
Q ss_pred CCCcEEEEecccccceeeeeEeeec
Q 040515 226 MPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
. ++++.++.||...++||+++
T Consensus 373 --~--gl~~~c~ggg~g~a~~~~~~ 393 (393)
T 1afw_A 373 --I--GVVSMCIGTGMGAAAIFIKE 393 (393)
T ss_dssp --E--EEEEEEETTTEEEEEEEEEC
T ss_pred --C--cEEEEeecccceEEEEEEeC
Confidence 1 66666667888889999874
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-27 Score=202.23 Aligned_cols=210 Identities=22% Similarity=0.326 Sum_probs=157.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHH-------------------------------H-
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMA-------------------------------G- 48 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~-------------------------------~- 48 (251)
+|+++|+++|+|+++||+.|+++|++|++|.+||+|+|.++..+... .
T Consensus 82 ~p~~~v~~aCss~~~al~~A~~~I~~G~~~~vlv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 161 (394)
T 3ss6_A 82 VTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSSPYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGE 161 (394)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHHTSCSEEEEEEEEECTTCCEEESSTTTCCCSSCCCCEEHHHHHTBCTTTCCBHHH
T ss_pred ceEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEhhccCCcccccccccccccCCcccccccccccccccccchHHH
Confidence 47899999999999999999999999999999999999876532100 0
Q ss_pred --------------------H-hh--------hhhcccc---------c---CCCCCCcccc-------------cccC-
Q 040515 49 --------------------F-CK--------SRALTTK---------Y---NGTPQEASRP-------------FDCG- 73 (251)
Q Consensus 49 --------------------~-~~--------~~~l~~~---------~---~~~~~~~~~~-------------f~~~- 73 (251)
. ++ .+.+.+. . ...|++.+++ |+..
T Consensus 162 ~a~~~~~~~g~tre~~~~~a~~s~~~A~~a~~ag~f~~ei~p~~~~~~~~~~~~~~d~~~R~~~t~e~~~~~~pvf~~~g 241 (394)
T 3ss6_A 162 TAENLVEQYEITREEQDEVALRSHTLALKAIESGYFDDQIVPITIKERRKEVVFSKDEHPRADITAEKLAGLKPAFRKDG 241 (394)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECSSCEEEECSCCCCCTTCCHHHHHTCCBSSSTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHhcCCccceeEeEEeccCCCceeecccccccCCCCHHHHhhCCCccCCCC
Confidence 0 00 0000000 0 0123333332 4421
Q ss_pred ----C------Ccc------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 74 ----R------DGF------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 74 ----~------~g~------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
. +|. +++.|++++.+++++|+|++.++. .|.+.+.++..+++++|+++|++|+||||||
T Consensus 242 ~~t~~~~~~~~dGaaavvL~~~~~A~~~g~~~~a~I~g~~~~~~-----~p~~~~~~~~~a~~~al~~agl~~~dId~ve 316 (394)
T 3ss6_A 242 SVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGV-----DPKIMGIGPAPAIRKGLEKVDWSLEDADLLE 316 (394)
T ss_dssp CCBSTTBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEEC-----CGGGGGGTHHHHHHHHHHHHTCCGGGCSEEE
T ss_pred ceecCccCCcccceeEEEeccHHHHHHCCCCceEEEEEEEEecC-----CCccchHHHHHHHHHHHHHcCCCHHHcCEEE
Confidence 1 111 678899999999999999998763 3333455678999999999999999999999
Q ss_pred ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
+|+.. .+|..++.+.|+-.. .++++++.|.++||+.+|+|+.++++++++|+++
T Consensus 317 ~~d~f-----a~~~~~~~~~lg~~~--~~v~~~gg~~~~GH~~gasG~~~~~~~~~~L~~~------------------- 370 (394)
T 3ss6_A 317 INEAF-----AAQYLAVEKELDLDR--EKVNVNGSGVGLGHPIGCTGARITVSLIHELKRR------------------- 370 (394)
T ss_dssp ECCSB-----HHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred eCCch-----HHHHHHHHHHhCCCC--CCCCCCcchHhhCCcHHHHHHHHHHHHHHHHHhc-------------------
Confidence 99653 358888888876432 3578888999999999999999999999999872
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.++++++.++.||...++|||+.
T Consensus 371 ---------~~~~gl~~~c~ggG~g~a~~~e~~ 394 (394)
T 3ss6_A 371 ---------GLEKGIASLCVGGGIGVALFIEAL 394 (394)
T ss_dssp ---------TCCEEEEEEEETTTEEEEEEEEEC
T ss_pred ---------CCCEEEEEEccCcCceeEEEEEcC
Confidence 257889998899999999999974
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=199.60 Aligned_cols=212 Identities=25% Similarity=0.313 Sum_probs=150.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhH----------------------------------
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSM---------------------------------- 46 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~---------------------------------- 46 (251)
+|+++|+++|+|+++||+.|+++|++|++|++||+|+|.++..+..
T Consensus 82 ~p~~~v~~aCss~l~Al~~A~~~I~sG~~d~vLv~G~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~g~t 161 (387)
T 3goa_A 82 VPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLSRLHGIS 161 (387)
T ss_dssp SCCEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECTTTSCTTTTBCCCTTCC-------CCCHHHHHHHHHHTTCC
T ss_pred CcEeEecCcchHHHHHHHHHHHHHhCCCCCEEEEEEEecCCCCccccccCcCcccccccccccccHHHHHHHHHHHhCCC
Confidence 4889999999999999999999999999999999999987654221
Q ss_pred -H---HH---h--------hhhhccccc-------------CCCCCCcccc-------------ccc-C-----------
Q 040515 47 -A---GF---C--------KSRALTTKY-------------NGTPQEASRP-------------FDC-G----------- 73 (251)
Q Consensus 47 -~---~~---~--------~~~~l~~~~-------------~~~~~~~~~~-------------f~~-~----------- 73 (251)
. .+ . ..+.+...- .-++++.+++ |+. +
T Consensus 162 re~~~~~a~~s~~~A~~a~~~g~f~~ei~p~~~~~~~~~~~~~~~d~~~r~~~t~e~l~~~~p~f~~~~g~~t~~~~~~~ 241 (387)
T 3goa_A 162 REMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTAGTSSAL 241 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTBCCEEEECTTSCEEEECSCTTCCTTCCHHHHTTSCCSSCTTTCCCCGGGBCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhcCCcccceeeeeeccccCcccccccccccCCCCCHHHHhcCCCcccCCCCceecccCCCc
Confidence 0 00 0 000111000 0011222222 443 0
Q ss_pred CCcc------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 74 RDGF------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 74 ~~g~------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
.+|. +++.|++++.+++++|+|++.+++... ....+...+++++|+++|++|+||||||+|++++..
T Consensus 242 ~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~~~-----~~~~~~~~a~~~al~~agl~~~did~ve~h~~f~~~-- 314 (387)
T 3goa_A 242 SDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPS-----IMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQ-- 314 (387)
T ss_dssp EEEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCTT-----STTCTHHHHHHHHHHHHTCCGGGCSEEEECCSBHHH--
T ss_pred CccEEEEEEecHHHHHHcCCCccEEEEEEEEcCCCCC-----cchHHHHHHHHHHHHHcCCCHHHcCEEEEeCcchHH--
Confidence 1111 778899999999999999999887532 233356889999999999999999999999888763
Q ss_pred HHHHHHHHHHhhc-cCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCC
Q 040515 148 TVEATAIRTVFSD-HATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDM 226 (251)
Q Consensus 148 ~~E~~a~~~~~~~-~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (251)
+...++.+ +- .....+++++..+..+||++||+|+.++++++++|+++
T Consensus 315 --~~~~~~~l-g~~~~~~~~vn~~gg~~~~GH~~gasG~~~~~~~~~~L~~~---------------------------- 363 (387)
T 3goa_A 315 --ILPCIKDL-GLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK---------------------------- 363 (387)
T ss_dssp --HHHHHHHT-TCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred --HHHHHHHh-CCCcCCCccCCCCCchhcccCCHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 44444443 21 00011244445555799999999999999999999972
Q ss_pred CCcEEEEecccccceeeeeEeeec
Q 040515 227 PISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 227 ~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
+.++++++.+..||...++|||+.
T Consensus 364 ~~~~gl~~~c~ggG~g~a~~~e~~ 387 (387)
T 3goa_A 364 DAQFGLATMCIGLGQGIATVFERV 387 (387)
T ss_dssp TCSEEEEEEEETTTEEEEEEEECC
T ss_pred CCCEEEEEeccCcCceEEEEEEeC
Confidence 347888888888899999999873
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=200.43 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=155.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHH------------------------------H-
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAG------------------------------F- 49 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~------------------------------~- 49 (251)
+|+++|+++|+|++.||+.|+++|++|++|.+||+|+|.++....... +
T Consensus 82 ~p~~~v~~~Css~~~al~~A~~~I~~G~~~~vlv~g~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (395)
T 4e1l_A 82 VPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQAPYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMG 161 (395)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTHHHHSBHHHHEEESCCC------CCTTEEEETTHHHHH
T ss_pred ceEEEccccchHHHHHHHHHHHHHhCCCCCEEEEEEEecccCCcccccccccccccCccccchhhcccccccccccchHH
Confidence 489999999999999999999999999999999999998876432110 0
Q ss_pred -----------------------hh--------hhhcccc---------c----CCCCCCcccc-------------ccc
Q 040515 50 -----------------------CK--------SRALTTK---------Y----NGTPQEASRP-------------FDC 72 (251)
Q Consensus 50 -----------------------~~--------~~~l~~~---------~----~~~~~~~~~~-------------f~~ 72 (251)
.+ .+.+.+. . ...+++.+++ |+.
T Consensus 162 ~~a~~~~~~~g~tre~~~~~a~~s~~~a~~a~~~g~~~~ei~pv~~~~~~g~~~~~~~d~~~r~~~t~e~l~~~~~v~~~ 241 (395)
T 4e1l_A 162 ITAENIATKFEFTREMQDKLALESQNKAENAIKNNRFKEEIVPVDVLIRRGKIETIDKDEYPKLGMTFEGLSKLKPAFKK 241 (395)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTTTTTTBCCEEEEEETTEEEEECSCSCCCTTCCHHHHHHCCBSSST
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCcccceeeeEeccCCCcceEECCccccCCCCCHHHHhhCCCccCC
Confidence 00 0000000 0 0012222221 321
Q ss_pred C-----------CCcc------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 040515 73 G-----------RDGF------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDY 135 (251)
Q Consensus 73 ~-----------~~g~------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~ 135 (251)
. .+|. +++.|++++.+++++|+|++.+++. |.+.+.++..+++++|+++|++|+||||
T Consensus 242 ~g~~t~~~~~~~~dGaaavvL~s~~~A~~~g~~~~a~i~g~~~~~~~-----p~~~~~~~~~ai~~al~~agl~~~dId~ 316 (395)
T 4e1l_A 242 DGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVE-----PEVMGTGPIPATRKALKKAGLSINDIDL 316 (395)
T ss_dssp TCSCBTTSBCCCEEEEEEEEEEEHHHHHHHTCCCSEEEEEEEEEECC-----GGGTTCTHHHHHHHHHHHTTCCGGGCSE
T ss_pred CCCeeCCcCCCccceEEEEEEecHHHHHHCCCCeEEEEEEEEEccCC-----CCcchHHHHHHHHHHHHHcCCCHHHcCE
Confidence 0 1111 6788999999999999999988742 3333445788999999999999999999
Q ss_pred EEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCC
Q 040515 136 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND 215 (251)
Q Consensus 136 i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 215 (251)
||+|+.. .+|..++.+.|+-.. .++++++.|.++||+++|+|+.++++++++|+++
T Consensus 317 ve~~d~f-----a~~~~~~~~~lg~~~--~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L~~~----------------- 372 (395)
T 4e1l_A 317 IEANEAF-----AAQALAVKNELQIDS--SKLNVNGGAIALGHPIGASGARILVTLIYEMQKR----------------- 372 (395)
T ss_dssp EEECCSB-----HHHHHHHHHHHTCCG--GGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH-----------------
T ss_pred EEecChh-----HHHHHHHHHHhCCCC--CCCCcCCchhhcCCcHHHHHHHHHHHHHHHHHhc-----------------
Confidence 9999553 357777777776432 3578899999999999999999999999999973
Q ss_pred CCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 216 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 216 ~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
+.++++++.++.||...++|||+
T Consensus 373 -----------~~~~gl~~~c~ggG~g~a~~~e~ 395 (395)
T 4e1l_A 373 -----------KVETGLATLCIGGGQGISMVVSR 395 (395)
T ss_dssp -----------TCSEEEEEEESSTTEEEEEEEEC
T ss_pred -----------CCCEEEEEEccCCCceEEEEEeC
Confidence 24788999899999999999985
|
| >3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-25 Score=193.50 Aligned_cols=133 Identities=20% Similarity=0.195 Sum_probs=102.3
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTV 157 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~ 157 (251)
+++.|++++.+++++|.|++.+.+... ....+...+++++|+++|++++||||||+|++.+.. |...++.
T Consensus 275 s~~~A~~~g~~~~a~i~g~~~~~~~p~-----~~~~~~~~a~~~al~~Agl~~~dId~~e~hdaf~~~----~l~~~~~- 344 (407)
T 3svk_A 275 SEKAGKSQGLTPRARIVATATSGSDPV-----IMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASV----VLKFQKD- 344 (407)
T ss_dssp CHHHHHHTTCCCCEEEEEEEEC-----------CCCTHHHHHHHHHHHHTCCGGGCSEEEECCSBHHH----HHHHHHH-
T ss_pred eHHHHHHcCCCCcEEEEEEEEeccCCc-----cccHHHHHHHHHHHHHcCCCHHHCCEEEEeChhHHH----HHHHHHH-
Confidence 678899999999999999999876432 223345789999999999999999999999887664 5444443
Q ss_pred hhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccc
Q 040515 158 FSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFG 237 (251)
Q Consensus 158 ~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g 237 (251)
|+-.. .++.++..+..+||++||+|+.+++++++||+++ +.++++++.++
T Consensus 345 lg~~~--~~vn~~Gg~~~~GHp~gasG~~~~~~~~~~L~~~----------------------------~~~~gl~~~c~ 394 (407)
T 3svk_A 345 LNIPD--EKLNVNGGAIAMGHPLGATGAMITGTMVDELERR----------------------------NARRALITLCI 394 (407)
T ss_dssp HTCCG--GGBSTTCCHHHHCBCGGGHHHHHHHHHHHHHHHH----------------------------TCCEEEEEEEC
T ss_pred hCCCC--CCCCCCCcHhheeCcHHHHHHHHHHHHHHHHHhc----------------------------CCCEEEEEeec
Confidence 33211 1355555556799999999999999999999862 35789999999
Q ss_pred ccceeeeeEeeec
Q 040515 238 FGGTNASLLFTKC 250 (251)
Q Consensus 238 ~gG~~~~~vl~~~ 250 (251)
.||...++|||+.
T Consensus 395 ggG~g~a~~~e~~ 407 (407)
T 3svk_A 395 GGGMGVATIIERV 407 (407)
T ss_dssp SSSCEEEEEEEEC
T ss_pred cCcceEEEEEEcC
Confidence 9999999999973
|
| >4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=187.77 Aligned_cols=158 Identities=13% Similarity=0.038 Sum_probs=107.0
Q ss_pred chhhhhhcCCeEEEEEeeeeecCCCCC--CCCCC-CChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHH
Q 040515 78 ELEHAKKRGAKIYAEVRGYGMSGDAHH--ITQPH-IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAI 154 (251)
Q Consensus 78 ~~~~A~~~g~~~~a~i~g~~~~~~~~~--~~~~~-~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~ 154 (251)
+++.|++.|.+++++|.+++....... ...++ ....++..+++++|+++|++++|||+||+|..++. +..+.
T Consensus 279 S~e~A~~lGl~p~a~I~~~a~a~~~~~~~~~~~~~~~~~~~~~a~~~al~~agl~~~did~~E~~dAF~~-----~~l~~ 353 (520)
T 4egv_A 279 SVESARKLGVPEEKWVYLRGHADMKEPKLLERADIGASPASVTAVNEALRVAGIGLDDVAAFDLYSCFPF-----PVFNI 353 (520)
T ss_dssp EHHHHHHHTCCGGGCEEEEEEEEEECCCGGGCSCTTCCHHHHHHHHHHHHHHTCCGGGEEEEEECCSSSH-----HHHHH
T ss_pred eHHHHHHcCCCCceEEEEEEEeccCCcccccccccccChHHHHHHHHHHHHhCCCHHHCCEEEEeCCcHH-----HHHHH
Confidence 778899999988877777665433221 11121 12567889999999999999999999999965554 33333
Q ss_pred HHHhhc-cCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCC---------CCccccCC
Q 040515 155 RTVFSD-HATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDN---------FMPLTASK 224 (251)
Q Consensus 155 ~~~~~~-~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~---------~~~~~~~~ 224 (251)
.+.++- .....++.++..+.++||+.+++|+.++++++++||++..+..++ .+++.+.+. ..+|. .
T Consensus 354 ~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~~v~~lr~~~~~~~L~--~~~gg~~~~~~~~~l~~~~~~w~--~ 429 (520)
T 4egv_A 354 CDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAEAVNEMRDKPGQFALV--GANGGIASKYSVGIYSTEPADWV--A 429 (520)
T ss_dssp HHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHHHHHHHHHSTTCEEEE--EEEETTTTEEEEEEEESSCCCCC--C
T ss_pred HHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHHHHHHHhcCCCCceEE--eCCCCeeeeeeEEEEcCCCCCCC--C
Confidence 343442 222335666666678999999999999999999999998887665 355555432 22322 2
Q ss_pred CCCCcEEEEecccccceeeeeEeee
Q 040515 225 DMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 225 ~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+++.+.+++ +|+|++|++
T Consensus 430 ~~~~~~~~~~~-----~~~~~~~~~ 449 (520)
T 4egv_A 430 DNSAQLQAEHD-----AQPKVAITE 449 (520)
T ss_dssp CCHHHHHHHHH-----TSCCCCBCS
T ss_pred CCCCccccccc-----CCCCccccc
Confidence 23344554444 778888764
|
| >1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-22 Score=168.40 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=132.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
+|+++|+++|+|++.||..|+++|++|++|.+||+|+|.+. +.. .+. . ......|.+.+..+.++
T Consensus 101 ~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s-~~~--~~~-----d-------~~~~~~~GdGA~A~vL~ 165 (322)
T 1ub7_A 101 AFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALS-KII--DWN-----D-------RATAVLFGDGGGAAVVG 165 (322)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGG-GTS--CTT-----C-------HHHHTTBCCEEEEEEEE
T ss_pred CEEEeeCccchHHHHHHHHHHHHHHcCCCCEEEEEEechhc-ccc--Chh-----h-------cccceeeccccEEEEEE
Confidence 58999999999999999999999999999999999999843 211 000 0 00112233333333332
Q ss_pred hhhhcCCeEEEEE-eeeeecCCCCCCCC-----CCC---------Ch--------HHHHHHHHHHHHHcCCCCCCccEEE
Q 040515 81 HAKKRGAKIYAEV-RGYGMSGDAHHITQ-----PHI---------DG--------KGAILAMTRALKQSGLQSHQVDYVN 137 (251)
Q Consensus 81 ~A~~~g~~~~a~i-~g~~~~~~~~~~~~-----~~~---------~~--------~~~~~a~~~al~~Agi~~~dId~i~ 137 (251)
.. ..+..+++.+ .+.+...+..+... |.. ++ ..+.++++++|+++|++++|||||+
T Consensus 166 ~~-~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~ 244 (322)
T 1ub7_A 166 KV-REGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPEDIRLFV 244 (322)
T ss_dssp CC-CTTCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEE
T ss_pred ec-CCCCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 11 1133555544 22222222211100 111 22 5778899999999999999999999
Q ss_pred ecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 138 AHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 138 ~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
+|+++++..|. +.+.|+.... .+.+.|..+||+.+|++++.+.++ ++++.+
T Consensus 245 ~H~~~~~~~d~-----~~~~lg~~~~----~~~~~~~~~Gh~~~As~~~~l~~~---l~~g~~----------------- 295 (322)
T 1ub7_A 245 PHQANLRIIDA-----ARERLGLPWE----RVAVNVDRYGNTSTASIPLALKEA---VDAGRI----------------- 295 (322)
T ss_dssp ECCSCHHHHHH-----HHHTTTCCGG----GBCCCHHHHCBCGGGHHHHHHHHH---HHHTSS-----------------
T ss_pred EcCCCHHHHHH-----HHHHcCCCHH----HHHHHHHhhCcHHHHHHHHHHHHH---HHhCCC-----------------
Confidence 99999987664 4555653221 233668899999999999987764 455542
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+.+.+++++||+|++++++||+.+
T Consensus 296 --------~~g~~~l~~~~G~G~~~~~~vl~~~ 320 (322)
T 1ub7_A 296 --------REGDHVLLVSFGAGLTWAAAVLTWG 320 (322)
T ss_dssp --------CTTCEEEEEEEETTTEEEEEEEECC
T ss_pred --------CCCCEEEEEEEChhheeEEEEEEeC
Confidence 1246899999999999999999864
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-20 Score=154.57 Aligned_cols=192 Identities=18% Similarity=0.168 Sum_probs=129.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCc--ccccccCCCccc
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA--SRPFDCGRDGFE 78 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~f~~~~~g~~ 78 (251)
+|+++|+++|+|++.||..|+++|++|++|.+||+|+|.++.... +++. ...|.+.+..+.
T Consensus 103 ~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~~~-----------------~~d~~~~~~~GdGA~A~v 165 (317)
T 1hnj_A 103 CPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCD-----------------PTDRGTIIIFGDGAGAAV 165 (317)
T ss_dssp SCEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECHHHHSC-----------------TTCHHHHTTBCCEEEEEE
T ss_pred CeEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccCC-----------------chhcccceeeccccEEEE
Confidence 589999999999999999999999999999999999997432110 1110 122444333333
Q ss_pred hhhhhhcCCeEEEEEee-eeecCCCCCCCC-----------CCCChH--------HHHHHHHHHHHHcCCCCCCccEEEe
Q 040515 79 LEHAKKRGAKIYAEVRG-YGMSGDAHHITQ-----------PHIDGK--------GAILAMTRALKQSGLQSHQVDYVNA 138 (251)
Q Consensus 79 ~~~A~~~g~~~~a~i~g-~~~~~~~~~~~~-----------~~~~~~--------~~~~a~~~al~~Agi~~~dId~i~~ 138 (251)
++... +..+++.+.+ .+...+..+... ..+++. .+.++++++|+++|++++|||||++
T Consensus 166 L~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL~~agl~~~did~v~~ 243 (317)
T 1hnj_A 166 LAASE--EPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVP 243 (317)
T ss_dssp EEEES--SCSEEEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEE
T ss_pred EEecC--CCceeeEEEEEcCCCCCeEEECCCCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 32211 1346666544 222112111111 112344 6788999999999999999999999
Q ss_pred cCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCC
Q 040515 139 HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFM 218 (251)
Q Consensus 139 h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~ 218 (251)
|+++++..|. +.+.|+... -.+.+.|+.+||+.+|+.++.|.+++ +.+.+
T Consensus 244 H~~~~~~~d~-----i~~~lg~~~----~~~~~~~~~~Gn~~~As~~~~L~~~~---~~~~~------------------ 293 (317)
T 1hnj_A 244 HQANLRIISA-----TAKKLGMSM----DNVVVTLDRHGNTSAASVPCALDEAV---RDGRI------------------ 293 (317)
T ss_dssp CCSCHHHHHH-----HHHHTTCCG----GGBCCCHHHHCBCGGGHHHHHHHHHH---HTTCS------------------
T ss_pred cCCCHHHHHH-----HHHHcCCCH----HHhHhhHhhhCcHHHHHHHHHHHHHH---HhCCC------------------
Confidence 9999987663 555665322 12447888999999999998876653 33321
Q ss_pred ccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 219 PLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 219 ~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+.+++.+||.|.+..+++|+
T Consensus 294 -------~~G~~vll~~~G~G~t~~~~~l~ 316 (317)
T 1hnj_A 294 -------KPGQLVLLEAFGGGFTWGSALVR 316 (317)
T ss_dssp -------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred -------CCCCEEEEEEEchhheeEEEEEE
Confidence 22457888899999999988886
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-20 Score=153.27 Aligned_cols=190 Identities=15% Similarity=0.164 Sum_probs=127.7
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++++++|+|++.||..|+++|++|++|.+||+|+|.+.... .. .....+..|.+.+..+.++.
T Consensus 103 ~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vlv~g~e~~s~~~-----------~~----~~~~~~~~~gdGaaA~vL~~ 167 (309)
T 2ebd_A 103 YAFDISAACSGFIYALDIADSFIKSGKAKNVLVIGAEKLSEAV-----------DW----EDRSTCVLFGDGAGAVVVTR 167 (309)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGTC-----------CT----TCTTTTTTBCEEEEEEEEEE
T ss_pred eEEecCccchHHHHHHHHHHHHHHCCCCCEEEEEEeccccccc-----------Cc----cchhhccccccccEEEEEEe
Confidence 7899999999999999999999999999999999999843211 00 00011223444333333322
Q ss_pred hhhcCCeEEEEEeeeeecCCCC---CCCCC-----CCChH--------HHHHHHHHHHHHcCCCCCCccEEEecCCCCcC
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAH---HITQP-----HIDGK--------GAILAMTRALKQSGLQSHQVDYVNAHATSTPL 145 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~---~~~~~-----~~~~~--------~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~ 145 (251)
.. ....+++.+ ..+++. ....| ..++. .+.++++++|+++|++++|||+|++|++++..
T Consensus 168 ~~-~~~~i~~~~----~~~~g~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~ 242 (309)
T 2ebd_A 168 SE-DKSDILATR----MYAEGSLEELLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRI 242 (309)
T ss_dssp CS-SSCEEEEEE----EEECGGGGGGEEECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH
T ss_pred cC-CCCceeEEE----EEecCCccceeEeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH
Confidence 11 112344333 333432 12212 22333 67889999999999999999999999999886
Q ss_pred CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCC
Q 040515 146 GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKD 225 (251)
Q Consensus 146 ~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
.| ++.+.|+-... +++ +.|..+||+.+|++++.|.+++. .+. .
T Consensus 243 ~~-----~~~~~lg~~~~--~~~--~~~~~~Gh~~~As~~~~L~~~~~---~g~-------------------------~ 285 (309)
T 2ebd_A 243 IN-----ALAEKLNIPKE--KVF--VNIQKYGNTSAASIPIALHEAIK---EGK-------------------------V 285 (309)
T ss_dssp HH-----HHHHHTTCCGG--GBC--CCHHHHCBCGGGHHHHHHHHHHH---TTC-------------------------C
T ss_pred HH-----HHHHHhCCCHH--Hhh--hhHhhhcchHHHHHHHHHHHHHH---cCC-------------------------C
Confidence 54 34555653221 133 56889999999999999887753 222 1
Q ss_pred CCCcEEEEecccccceeeeeEee
Q 040515 226 MPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 226 ~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+.+++.++|.|.+..+++|+
T Consensus 286 ~~G~~~l~~~~G~G~~~~~~~l~ 308 (309)
T 2ebd_A 286 KRGDLILMTAMGGGLTWGAVLLR 308 (309)
T ss_dssp CTTCEEEEEEEETTTEEEEEEEE
T ss_pred CCCCEEEEEEEchhhhhEEEEEE
Confidence 22467888999999999999986
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-20 Score=154.20 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=127.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
+|+++|+++|+|++.||..|+++|++|++|.+||+|+|.++....+. .. .....|.+.+..+.++
T Consensus 103 ~~~~~v~~aCas~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~~~~--d~-------------~~~~~~gdGa~A~vl~ 167 (313)
T 1zow_A 103 VASMDQLAACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDLT--DR-------------STAVLFGDGAGAVIIG 167 (313)
T ss_dssp CCEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEEGGGTCCTT--CH-------------HHHTTBCEEEEEEEEE
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccccccCcc--cc-------------cceeeeccceEEEEEE
Confidence 48899999999999999999999999999999999999843321100 00 0112233333333222
Q ss_pred hhhhcCCeEEEE-EeeeeecCCCCCCCCC----CCCh--------HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc
Q 040515 81 HAKKRGAKIYAE-VRGYGMSGDAHHITQP----HIDG--------KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147 (251)
Q Consensus 81 ~A~~~g~~~~a~-i~g~~~~~~~~~~~~~----~~~~--------~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D 147 (251)
.. ..+.++++. +.+.+...+..+...+ ..++ ..+.++++++|+++|++++|||+|++|+++++..|
T Consensus 168 ~~-~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~~d 246 (313)
T 1zow_A 168 EV-SEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIPHQANIRIME 246 (313)
T ss_dssp EC-STTCEEEEEEEEECGGGGGGEEECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHH
T ss_pred ec-CCCCceeEEEEEEcCCCcCeEEecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHH
Confidence 11 112344432 2222222111111110 0122 36778999999999999999999999999999877
Q ss_pred HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCC
Q 040515 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMP 227 (251)
Q Consensus 148 ~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (251)
.+ .+.|+-... +++ ..|..+||+.+|++++.|.+++ +.+. ..+
T Consensus 247 ~~-----~~~lg~~~~--~~~--~~~~~~Gh~~~as~~~~L~~~~---~~~~-------------------------~~~ 289 (313)
T 1zow_A 247 SA-----RERLGISKD--KMS--VSVNKYGNTSAASIPLSIDQEL---KNGK-------------------------LKD 289 (313)
T ss_dssp HH-----HHHHTCCGG--GBC--CCHHHHCBCGGGHHHHHHHHHH---HTTC-------------------------CCT
T ss_pred HH-----HHHhCCCHH--HHH--HhHhhhCchHHHHHHHHHHHHH---HcCC-------------------------CCC
Confidence 64 344542211 233 3588999999999999887764 3322 122
Q ss_pred CcEEEEecccccceeeeeEee
Q 040515 228 ISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 228 ~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+++.+||.|.+..++||+
T Consensus 290 g~~vl~~~~G~G~t~~~~~l~ 310 (313)
T 1zow_A 290 DDTIVLVGFGGGLTWGAMTIK 310 (313)
T ss_dssp TCEEEEEEEETTTEEEEEEEE
T ss_pred CCEEEEEEEchhhhheEEEEE
Confidence 467899999999999999986
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-18 Score=146.86 Aligned_cols=196 Identities=19% Similarity=0.131 Sum_probs=125.6
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
+|+++|+++|+|++.||..|+++|++|++|.+||+|+|.++ +.. ... ++ .....|.+.+..+.++
T Consensus 112 ~~~~~v~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s-~~~----------~~~---d~-~~~~~~GdGA~A~vL~ 176 (339)
T 1mzj_A 112 AGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMT-DVI----------DLA---DR-SLSFLFGDGAGAAVVG 176 (339)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEGG-GGS----------CSS---CT-TTTTTBCEEEEEEEEE
T ss_pred ccEEEccccchHHHHHHHHHHHHHHCCCCCEEEEEEEcccc-ccc----------Ccc---cc-ccceEeccCceEEEEE
Confidence 58899999999999999999999999999999999999843 321 000 00 1122344433333332
Q ss_pred hhhhcCCeEEEEE-eeeeecCCCCCCC--CCC-------------CCh--------HHHHHHHHHHHHHcCCCCCCccEE
Q 040515 81 HAKKRGAKIYAEV-RGYGMSGDAHHIT--QPH-------------IDG--------KGAILAMTRALKQSGLQSHQVDYV 136 (251)
Q Consensus 81 ~A~~~g~~~~a~i-~g~~~~~~~~~~~--~~~-------------~~~--------~~~~~a~~~al~~Agi~~~dId~i 136 (251)
.. .+..+++.. .+.+...+..+.. .|. .++ ..+.++++++|+++|++++|||||
T Consensus 177 ~~--~~~~i~~~~~~~~g~~~~~~~~~g~~p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~agl~~~did~v 254 (339)
T 1mzj_A 177 PS--DVPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVGRPALVMDGKRVFRWAVADVVPAAREALEVAGLTVGDLVAF 254 (339)
T ss_dssp EE--SSCCBCCCEEEECGGGGGGEEESCCHHHHTTCSSSCSCCEEECHHHHHHHHHHHHHHHHHHHHHTTTCCGGGCSEE
T ss_pred ec--CCCCeEEEEEEEcCCCCCeEEecCCCCCcccccccccceEEeeCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 11 112232221 1111111111110 010 012 567889999999999999999999
Q ss_pred EecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCC
Q 040515 137 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDN 216 (251)
Q Consensus 137 ~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 216 (251)
++|+++++..|. +.+.++-... .+++ .....+||+.+|+..+.|.+++ +.+.+
T Consensus 255 ~~H~~~~~~~d~-----i~~~lg~~~~-~~~~--~~~~~~Gn~~sAs~~~~L~~~~---~~g~~---------------- 307 (339)
T 1mzj_A 255 VPHQANLRIIDV-----LVDRLGVPEH-VVVS--RDAEDTGNTSSASVALALDRLV---RSGAV---------------- 307 (339)
T ss_dssp EECCSCHHHHHH-----HHHHHTCCTT-SEEC--CTHHHHCBCTTHHHHHHHHHHH---HHTSS----------------
T ss_pred EECCCCHHHHHH-----HHHHhCCCcc-ceee--ehhhhcCchHHHHHHHHHHHHH---HcCCC----------------
Confidence 999999998775 4445543221 0232 2245899999999998877654 33321
Q ss_pred CCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 217 FMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 217 ~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
.+.+.+++.+||.|.+..++||+-
T Consensus 308 ---------~~G~~vll~~~G~G~t~~~~~l~~ 331 (339)
T 1mzj_A 308 ---------PGGGPALMIGFGAGLSYAGQALLL 331 (339)
T ss_dssp ---------CTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ---------CCCCEEEEEEEchhheeEEEEEEe
Confidence 224678899999999999999974
|
| >2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=140.08 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=126.2
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
+|+++|+++|+|++.||..|+++|++|++|.+||+|+|.++ +.. .+.. ......|.+.+..+.++
T Consensus 103 ~~~~~v~~aCas~~~Al~~A~~~i~~g~~~~vLv~g~e~~s-~~~--~~~d------------~~~~~~~GdGA~A~vL~ 167 (331)
T 2x3e_A 103 ALAFDLSAAATGFVYGLASVGSLISAGLADSALLVGVDTFS-HTL--DPAD------------RSTRALFGDGAGAVVLR 167 (331)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECGG-GGS--CTTC------------HHHHHHBCCEEEEEEEE
T ss_pred CcEEEEcCcChHHHHHHHHHHHHHHcCCCCEEEEEEeeccc-cCC--Cccc------------cccceeeccccEEEEEE
Confidence 57899999999999999999999999999999999999843 221 0000 00112244443333332
Q ss_pred hhh-hcCCeEEEEEeeeeecCCCC---CCCCCC----------------CCh--------HHHHHHHHHHHHHcCCCCCC
Q 040515 81 HAK-KRGAKIYAEVRGYGMSGDAH---HITQPH----------------IDG--------KGAILAMTRALKQSGLQSHQ 132 (251)
Q Consensus 81 ~A~-~~g~~~~a~i~g~~~~~~~~---~~~~~~----------------~~~--------~~~~~a~~~al~~Agi~~~d 132 (251)
... .++..+++.. ..+++. ....|. .++ ..+.++++++|+++|++++|
T Consensus 168 ~~~~a~~~~i~~~~----~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~aL~~agl~~~d 243 (331)
T 2x3e_A 168 AGDAEEEGALLAFD----LGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDSVRRVLDRVGWQASD 243 (331)
T ss_dssp EECTTSTTBEEEEE----EEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred ecCCCCCCceEEEE----EEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 111 0233444332 222321 111111 112 56788999999999999999
Q ss_pred ccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 133 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 133 Id~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
||+|++|+++++..|. +.+.++-... +++. ....+||+.+|+..+.|.+++ +.+.
T Consensus 244 id~~~~H~~~~~~~d~-----~~~~lg~~~~--~~~~--~~~~~Gnt~sAs~~~~L~~~~---~~~~------------- 298 (331)
T 2x3e_A 244 LHHLVPHQANTRILAA-----VADQLDLPVE--RVVS--NIAEVGNTVAASIPLALAHGL---RQGI------------- 298 (331)
T ss_dssp CSEEEECCCCHHHHHH-----HHHHHTCCGG--GBCC--CHHHHCBCGGGHHHHHHHHHH---HTTC-------------
T ss_pred CCEEEEcCCCHHHHHH-----HHHHcCCCHH--HHhh--hHhhhCcHHHHHHHHHHHHHH---HhCC-------------
Confidence 9999999999987765 3444543211 2332 346899999999888776553 3322
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+.+.+++.+||.|.+..+++|+-
T Consensus 299 ------------~~~G~~vll~~~G~G~~~~~~~l~~ 323 (331)
T 2x3e_A 299 ------------LRDGGNMVLTGFGAGLTWGSVALRW 323 (331)
T ss_dssp ------------SCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ------------CCCCCEEEEEEEeHHhhheeeEEEE
Confidence 1224688999999999999999974
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-17 Score=138.83 Aligned_cols=197 Identities=18% Similarity=0.180 Sum_probs=120.4
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
+|+++|+++|+|++.||..|+++|++|++|.+||+|+|.++....+ .. ...+..|.+.+..+.++
T Consensus 113 ~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~~~--------~d-------~~~~~~~gDGA~A~vl~ 177 (335)
T 1u6e_A 113 ILGFDLSAGAAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDM--------YD-------RGNCFIFADGAAAVVVG 177 (335)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHHHTSCSSEEEEEEEECGGGCCT--------TC-------TTTTTTBCEEEEEEEEE
T ss_pred CcEeeeccccHHHHHHHHHHHHHHHcCCCCEEEEEEEcccccccCc--------cc-------cccceEeccccEEEEEE
Confidence 4789999999999999999999999999999999999986431100 00 01122333333332222
Q ss_pred hhhhcCCeEEEEEee-eeecCCCCCCC--------C-------CCCC--------hHHHHHHHHHHHHHcCCCCCCccEE
Q 040515 81 HAKKRGAKIYAEVRG-YGMSGDAHHIT--------Q-------PHID--------GKGAILAMTRALKQSGLQSHQVDYV 136 (251)
Q Consensus 81 ~A~~~g~~~~a~i~g-~~~~~~~~~~~--------~-------~~~~--------~~~~~~a~~~al~~Agi~~~dId~i 136 (251)
....++ ++..+.+ .+...+..... . ...+ ...+.++++++|+++|++++|||+|
T Consensus 178 ~~~~~~--i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl~~~dId~~ 255 (335)
T 1u6e_A 178 ETPFQG--IGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQIDVF 255 (335)
T ss_dssp ECSSCC--BCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCEE
T ss_pred ecCCCC--eeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEE
Confidence 111111 2222211 11100000000 0 0011 2366789999999999999999999
Q ss_pred EecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCC
Q 040515 137 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDN 216 (251)
Q Consensus 137 ~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~ 216 (251)
++|+++++..|.+ .+.|+-...+ .+...+..+||+.+|+..+.+..+ ++.+.
T Consensus 256 ~~H~~~~~~~~~~-----~~~lg~~~~~---~~~~~~~~~Gnt~sAs~~~~L~~~---~~~~~----------------- 307 (335)
T 1u6e_A 256 VPHQANSRINELL-----VKNLQLRPDA---VVANDIEHTGNTSAASIPLAMAEL---LTTGA----------------- 307 (335)
T ss_dssp EECCSCHHHHHHH-----HHHHTCCTTC---EECCTHHHHCBCGGGHHHHHHHHH---HHHTS-----------------
T ss_pred EECCCCHHHHHHH-----HHHcCCCchh---hhhhhhhhhCcHHHHHHHHHHHHH---HHcCC-----------------
Confidence 9999999876663 3444432211 222335789999999965433322 22221
Q ss_pred CCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 217 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 217 ~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
..+.+.+++++||+|.++.++||+..
T Consensus 308 --------~~~g~~~l~~~~G~G~t~~~~vl~~~ 333 (335)
T 1u6e_A 308 --------AKPGDLALLIGYGAGLSYAAQVVRMP 333 (335)
T ss_dssp --------SCTTCEEEEEEEETTTEEEEEEEECC
T ss_pred --------CCCCCEEEEEEEehhheeEEEEEEeC
Confidence 12247899999999999999999753
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-16 Score=137.24 Aligned_cols=191 Identities=16% Similarity=0.118 Sum_probs=122.2
Q ss_pred Ceeec-chhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCc-------ccccccC
Q 040515 2 PNHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEA-------SRPFDCG 73 (251)
Q Consensus 2 p~~tv-~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~f~~~ 73 (251)
|+++| +++|+|++.||..|+++|++|.+|.+||+|+|.++.... +.+. ...|.+.
T Consensus 137 ~~~~v~~~aCss~~~Al~~A~~~i~~g~~~~vLv~g~e~~s~~~~-----------------~~d~~~~~~~~~~lfGDG 199 (382)
T 1u0m_A 137 RQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQ-----------------PTDLGVGSLLCNGLFGDG 199 (382)
T ss_dssp EEEEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGGGGCC-----------------TTCCSHHHHHHHHHBCEE
T ss_pred ceEEccCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchhcC-----------------cccCCHHHhhccchhcCC
Confidence 67888 899999999999999999999999999999998532210 1010 1223333
Q ss_pred CCccchhhhhhcCCeEEEEEeeeee--cCCCCC------------C----CCCCCChHHHHHHHHHHHHHcCCCCCCccE
Q 040515 74 RDGFELEHAKKRGAKIYAEVRGYGM--SGDAHH------------I----TQPHIDGKGAILAMTRALKQSGLQSHQVDY 135 (251)
Q Consensus 74 ~~g~~~~~A~~~g~~~~a~i~g~~~--~~~~~~------------~----~~~~~~~~~~~~a~~~al~~Agi~~~dId~ 135 (251)
+..+.++....++ ..|.++.. ..++.. . ..+......+. +++++|+++|++++|||+
T Consensus 200 A~A~vL~~~~~~g----~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~-~i~~aL~~agl~~~dId~ 274 (382)
T 1u0m_A 200 IAAAVVRGRGGTG----VRLERNGSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAP-ALKELAGEHGWDASDLDF 274 (382)
T ss_dssp EEEEEEETTTCSE----EEEEEEEEEECSSCTTTEEEEEETTEEEEEECTTTGGGHHHHHH-HHHHHHHTTSCCSSCCSC
T ss_pred cEEEEEeccCCCC----cEEEEeeeEecCChHHhcCceecCCceEEEeCcHHHHHHHHHHH-HHHHHHHHcCCCHHHCCE
Confidence 3333332211122 23444332 222221 0 01111245677 999999999999999999
Q ss_pred EEecCCCCcCCcHHHHHHHHHHhhccCCCCceee-ecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC
Q 040515 136 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN 214 (251)
Q Consensus 136 i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v-~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~ 214 (251)
|++|+++++..|.+ .+.++-.. .++++ ...+..+||+.+|+..+.|.+++ +.+.+
T Consensus 275 v~~H~~~~~i~d~~-----~~~lgl~~--~k~~~s~~~~~~~Gnt~sAsi~~~L~~~~---~~g~~-------------- 330 (382)
T 1u0m_A 275 YIVHAGGPRILDDL-----STFLEVDP--HAFRFSRATLTEYGNIASAVVLDALRRLF---DEGGV-------------- 330 (382)
T ss_dssp CEEECSHHHHHHHH-----HHHSCSCG--GGGHHHHHHHHHTCBCTTHHHHHHHHHHH---HSCCC--------------
T ss_pred EEECCCCHHHHHHH-----HHHcCCCH--HHHHHHHHHHHHhCCchhhHHHHHHHHHH---HhcCC--------------
Confidence 99999998876653 33343211 12332 24567899999999888776654 33221
Q ss_pred CCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 215 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
.+.+.+++.+||.|.+..+++|+-
T Consensus 331 -----------~~Gd~vll~~~G~G~t~~~~vl~~ 354 (382)
T 1u0m_A 331 -----------EEGARGLLAGFGPGITAEMSLGCW 354 (382)
T ss_dssp -----------CSSCCCEEEEEETTTEEEEEEEEE
T ss_pred -----------CCCCEEEEEEEcccceeEEEEEEE
Confidence 123567778999999999988864
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-15 Score=128.94 Aligned_cols=202 Identities=16% Similarity=0.104 Sum_probs=125.2
Q ss_pred eeec-chhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 3 NHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 3 ~~tv-~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
++++ +++|+|++.||..|+++|++|.+|.+||+|+|.++....+. ...... ..+..|.+++..+.++.
T Consensus 167 ~~~v~~~aCas~~~Al~~A~~~i~~G~~~~vLv~g~e~~s~~~~~~-~~r~~~----------~~~~lfGDGA~A~vL~~ 235 (393)
T 1ted_A 167 RVVVNFMGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAVFA-DDINDV----------VIHSLFGDGCAALVIGA 235 (393)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEECGGGCCCC-SSHHHH----------HHHHHBCEEEEEEEEEE
T ss_pred eeEeccchhHHHHHHHHHHHHHHHcCCCCEEEEEEEEeccccCCCC-CCHHHh----------hhhhhhcCccEEEEEec
Confidence 4677 89999999999999999999999999999999865322100 000000 00122433333332221
Q ss_pred ---hhhcCCeEEEEEeeeeec--CCCCCC--------------C--CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecC
Q 040515 82 ---AKKRGAKIYAEVRGYGMS--GDAHHI--------------T--QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA 140 (251)
Q Consensus 82 ---A~~~g~~~~a~i~g~~~~--~~~~~~--------------~--~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~ 140 (251)
+..++. .+++|.+++.. .|+... . .+......+..+++++|+++|++++|||+|.+|.
T Consensus 236 ~~~~~~~~~-~~~~i~~~~~~~~~d~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~aL~~agl~~~dId~~~~H~ 314 (393)
T 1ted_A 236 SQVQEKLEP-GKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHP 314 (393)
T ss_dssp ECTTSCCCT-TCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCSCEEECC
T ss_pred CCCccccCc-ceeeeeccceEEcCCchhhccceecCCCeEEecCchHHHHHHHHHHHHHHHHHHHcCCCHhHCCEEEECC
Confidence 111222 34566665433 444210 0 0111234677889999999999999999999999
Q ss_pred CCCcCCcHHHHHHHHHHhhccCCCCceee-ecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCc
Q 040515 141 TSTPLGDTVEATAIRTVFSDHATSGSLAF-SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMP 219 (251)
Q Consensus 141 ~gt~~~D~~E~~a~~~~~~~~~~~~~~~v-~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~ 219 (251)
+++...|.+|. .++-.. ..+++ ......+||+.+|+-.+.|..++ +.+.+
T Consensus 315 ~~~~i~d~~~~-----~lgl~~--~k~~~s~~~~~~~GNt~sAsi~~~L~~~~---~~g~~------------------- 365 (393)
T 1ted_A 315 GGPKIIEQSVR-----SLGISA--ELAAQSWDVLARFGNMLSVSLIFVLETMV---QQAES------------------- 365 (393)
T ss_dssp SCHHHHHHHHH-----HHTCCG--GGGHHHHHHHHHHCBCTHHHHHHHHHHHH---HSCSS-------------------
T ss_pred CcHHHHHHHHH-----HcCCCH--HHHHHHHHHHHhhCCchHhHHHHHHHHHH---hcCcc-------------------
Confidence 99987665543 233211 11322 13456789999998666554433 22210
Q ss_pred cccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 220 LTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 220 ~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
..+.+.+++.+||.|.+..+++|+..
T Consensus 366 -----~~~Gd~vll~~~G~G~t~~~~~l~~~ 391 (393)
T 1ted_A 366 -----AKAISTGVAFAFGPGVTVEGMLFDII 391 (393)
T ss_dssp -----SSSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred -----CCCCCeEEEEEeccchhhhhhheeec
Confidence 01346788899999999999999754
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=120.97 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=120.9
Q ss_pred Ceeecc-hhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 2 PNHAAV-TACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 2 p~~tv~-~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
|+++|+ ++|+|++.||..|+++|++|.+|.+||+|+|.++.... ........ ..+..|.+++....++
T Consensus 148 ~~~~v~~~aCss~~~al~~A~~~i~~g~~~~vLv~g~e~~s~~~~-~~~dr~~~----------~~~~lfGDGA~A~vL~ 216 (374)
T 2h84_A 148 ERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFS-NTDGGDQM----------VASSIFADGSAAYIIG 216 (374)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTCTTCEEEEEEEECCGGGCC-CSSSHHHH----------HHHHHBCCEEEEEEEE
T ss_pred ceEEecCCcCHHHHHHHHHHHHHHHcCCCCEEEEEEEEecchhhc-CCCCHHHH----------hhhhhhccCcEEEEEe
Confidence 678896 89999999999999999999999999999998643210 00000000 0011233333333221
Q ss_pred ---hhhhcCCeEEEEEeeeeec--CCCC------------CC----CCCCCChHHHHHHHHHHHHHcC------CCCCCc
Q 040515 81 ---HAKKRGAKIYAEVRGYGMS--GDAH------------HI----TQPHIDGKGAILAMTRALKQSG------LQSHQV 133 (251)
Q Consensus 81 ---~A~~~g~~~~a~i~g~~~~--~~~~------------~~----~~~~~~~~~~~~a~~~al~~Ag------i~~~dI 133 (251)
.+..+ .++ ++.+.+.. .++. .. ..+......+.++++++|+++| ++++||
T Consensus 217 ~~~~~~~~--~~~-~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~ag~~~~~~l~~~di 293 (374)
T 2h84_A 217 CNPRIEET--PLY-EVMCSINRSFPNTENAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDC 293 (374)
T ss_dssp SSCCTTCC--CCE-EEEEEEEEECSSCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHHTTTSCSCCCSSSS
T ss_pred cCCCcccC--Cce-eEEeeeeEEeCCCcccceeEEecCcEEEEeCchHHHHHHHHHHHHHHHHHHhcCCccccCCChhhc
Confidence 11111 123 45444322 1110 00 0000012467788999999999 999999
Q ss_pred cEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 134 DYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 134 d~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
|+| +|.++++..|.++ +.++-.. .+++++ .....+||+.+|+-.+.|..++ +.
T Consensus 294 d~~-~H~~~~~i~d~~~-----~~lgl~~--~k~~~s~~~~~~~Gnt~sasi~~~L~~~~---~~--------------- 347 (374)
T 2h84_A 294 EFL-IHTGGKSILMNIE-----NSLGIDP--KQTKNTWDVYHAYGNMSSASVIFVMDHAR---KS--------------- 347 (374)
T ss_dssp EEE-ECCCCHHHHHHHH-----HHTTCCG--GGGHHHHHHHHHHCBCTTHHHHHHHHHHH---TC---------------
T ss_pred CEe-ECCCCHHHHHHHH-----HHcCCCH--HHHHHHHHHHHHhCCchhhHHHHHHHHHH---hh---------------
Confidence 999 9999988766543 3343211 123332 3456789999999777766654 11
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.+ +.+.+++.+||.|-+..+++|+.+
T Consensus 348 ----------~~--~Gd~vll~~~G~G~t~~~~ll~~~ 373 (374)
T 2h84_A 348 ----------KS--LPTYSISLAFGPGLAFEGCFLKNV 373 (374)
T ss_dssp ----------SC--CCSEEEEEEEETTTEEEEEEEEEC
T ss_pred ----------cC--CCCeEEEEEeccchhhhhhhheec
Confidence 11 346788889999999999999865
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=116.56 Aligned_cols=198 Identities=15% Similarity=0.102 Sum_probs=119.8
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
.|+++|+.+|+|++.||..|+++|++|.++.+||+|+|.++....+ ...+.+. +...+.+|+....++
T Consensus 121 ~~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~---~~~~~~~------~~~~~~~f~~~~~~~~~G 191 (345)
T 3s21_A 121 CMTFDVANACLAFINGMDIAARMLERGEIDYALVVDGETANLVYEK---TLERMTS------PDVTEEEFRNELAALTLG 191 (345)
T ss_dssp CEEEECCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCHHHHHH---HHHHHTC------TTCCHHHHHHHHGGGGBC
T ss_pred ceEEeECCcCHHHHHHHHHHHHHHHCCCCCEEEEEEEcccchhhcc---ccccccC------Cccchhhhhhhccceeec
Confidence 3688999999999999999999999999999999999996544222 2222222 223455554333332
Q ss_pred ------chhhhhh--cCCeEEEEEeeeeecCCCCC--CCCC-----CCCh--------HHHHHHHHHHHHHcCCCCCCcc
Q 040515 78 ------ELEHAKK--RGAKIYAEVRGYGMSGDAHH--ITQP-----HIDG--------KGAILAMTRALKQSGLQSHQVD 134 (251)
Q Consensus 78 ------~~~~A~~--~g~~~~a~i~g~~~~~~~~~--~~~~-----~~~~--------~~~~~a~~~al~~Agi~~~dId 134 (251)
.++.... .+. .|.+....+++.. ...+ ..++ ..+.++++++|+++|++++|||
T Consensus 192 dGA~A~vl~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did 267 (345)
T 3s21_A 192 CGAAAMVMARSELVPDAP----RYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQKTFVAAKQVLGWAVEELD 267 (345)
T ss_dssp CEEEEEEEEEGGGSTTSC----EEEEEEEEECGGGTTC-----------CHHHHHHHHHHHHHHHHHHHHHHCCCGGGCS
T ss_pred cceeEEEEecCCCCCCCc----ceeeeccccCcchhhhccccCcceEEcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 2211111 112 2344443333221 0000 0111 2345677899999999999999
Q ss_pred EEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCC
Q 040515 135 YVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFN 214 (251)
Q Consensus 135 ~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~ 214 (251)
+|..|-.+.... ..+.+.++-... +++ ..-..+||+.+|+-.+.|.+++ +.+.+
T Consensus 268 ~~v~Hq~~~~i~-----~~~~~~lgl~~e--k~~--~~l~~~GNt~sasi~~~L~~~~---~~g~~-------------- 321 (345)
T 3s21_A 268 QFVIHQVSRPHT-----AAFVKSFGIDPA--KVM--TIFGEHGNIGPASVPIVLSKLK---ELGRL-------------- 321 (345)
T ss_dssp EEEECCSCHHHH-----HHHHHHHTCCGG--GBC--CCHHHHCBCGGGHHHHHHHHHH---HHTCC--------------
T ss_pred EEEeCCCCHHHH-----HHHHHHcCcCHH--Hce--eeHhhcCchHHHHHHHHHHHHH---HcCCC--------------
Confidence 999997665542 233333332111 122 1224689999999777766543 33321
Q ss_pred CCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 215 DNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 215 ~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+...+++.+||.|-+..+++|+
T Consensus 322 -----------~~Gd~vll~~~G~G~t~~~~~l~ 344 (345)
T 3s21_A 322 -----------KKGDRIALLGIGSGLNCSMAEVV 344 (345)
T ss_dssp -----------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred -----------CCCCEEEEEEEChhhhheEEEEE
Confidence 22356788899999898888876
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=114.19 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=115.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchh
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELE 80 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~ 80 (251)
.|+++|+.+|+|++.||..|+++|++|.++.+||+|+|.++....+. ....+..|.+.+....++
T Consensus 118 ~~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~~---------------d~~~~~lfGDGA~A~vl~ 182 (333)
T 4dfe_A 118 GAAFDVQAVCSGFAYAVATADSFIRSGQHRTALVIGAETFSRILDFK---------------DRTTCVLFGDGAGAVILQ 182 (333)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGCCTT---------------CTTTTTTBCEEEEEEEEE
T ss_pred CcEEEeCcccHHHHHHHHHHHHHHHcCCCCEEEEEEeeccccccCcc---------------cccceeeeccccEEEEEE
Confidence 36889999999999999999999999999999999999854432110 001223344444333222
Q ss_pred hhhhcCCeEEEEEeeeeecCCCCC---CCC--------------CCCC--------hHHHHHHHHHHHHHcCCCCCCccE
Q 040515 81 HAKKRGAKIYAEVRGYGMSGDAHH---ITQ--------------PHID--------GKGAILAMTRALKQSGLQSHQVDY 135 (251)
Q Consensus 81 ~A~~~g~~~~a~i~g~~~~~~~~~---~~~--------------~~~~--------~~~~~~a~~~al~~Agi~~~dId~ 135 (251)
... +..+ .++...+++.. ... ...+ ...+.++++++|+++|++++|||+
T Consensus 183 ~~~--~~~i----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~ 256 (333)
T 4dfe_A 183 ASD--EPGV----LASALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKVAVEALEKANLSAEQIDW 256 (333)
T ss_dssp EES--SCSE----EEEEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCSE
T ss_pred EcC--CCCe----EEEEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 111 1111 11111122110 000 0001 145678899999999999999999
Q ss_pred EEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCC
Q 040515 136 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND 215 (251)
Q Consensus 136 i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 215 (251)
|.+|-.+.... .++.+.++-.. .+++. ....+||+.+|+=.+.|.++ ++.+.
T Consensus 257 ~~~Hq~~~~i~-----~~~~~~lgl~~--~~~~~--~l~~~GNt~sasi~~~L~~~---~~~g~---------------- 308 (333)
T 4dfe_A 257 LIPHQANIRIM-----QSTCRKLGLPQ--ERMIV--TVGEHGNTSAASIPLALDVA---VRDGR---------------- 308 (333)
T ss_dssp EEECCSCHHHH-----HHHHHHTTCCG--GGBCC--CHHHHCBCGGGHHHHHHHHH---HHTTC----------------
T ss_pred EEEcCCCHHHH-----HHHHHHhCCCH--HHhhh--hHHhcCchHHHHHHHHHHHH---HHcCC----------------
Confidence 99997766532 33333333211 11222 33468999999866655544 33322
Q ss_pred CCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 216 NFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 216 ~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++.+||.|-+..++||+
T Consensus 309 ---------~~~Gd~vll~~~G~G~t~~~~ll~ 332 (333)
T 4dfe_A 309 ---------IKRGQNVLIEGVGGGFTWGASVIR 332 (333)
T ss_dssp ---------SCTTCEEEEEEEETTTEEEEEEEE
T ss_pred ---------CCCCCEEEEEEEchhheeEEEEEE
Confidence 122356777899999999988886
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-14 Score=133.39 Aligned_cols=211 Identities=12% Similarity=0.058 Sum_probs=129.9
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccch--
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFEL-- 79 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~-- 79 (251)
+++.++++|+|++.||..|.++|++|.++.+||+|+|.+..............+ ..+..|.+++....+
T Consensus 743 ~~~~v~~aCsg~~~Al~~A~~~i~sG~~~~vLvvg~e~~~~~~~~~~~~~~~~~---------~~~~lfGDGA~A~vL~~ 813 (979)
T 3tsy_A 743 RVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSEITVVTFRGPSEDALDSL---------VGQALFGDGSAAVIVGS 813 (979)
T ss_dssp EEEEESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECTTTTCCCCCSSCHHHH---------HHHHHBCCEEEEEEEES
T ss_pred EEeeeccccHhHHHHHHHHHHHHHhCCCCEEEEEEEEecchheeCCCccCHHHH---------hhhhhccCceEEEEEec
Confidence 358899999999999999999999999999999999974322110000000000 001234444444422
Q ss_pred -hhhhhcCCeEEEEEeeeeecCCCCCCCCCCC----------------ChHHHHHHHHHHHHHcCCCCCCccEEEecCCC
Q 040515 80 -EHAKKRGAKIYAEVRGYGMSGDAHHITQPHI----------------DGKGAILAMTRALKQSGLQSHQVDYVNAHATS 142 (251)
Q Consensus 80 -~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~----------------~~~~~~~a~~~al~~Agi~~~dId~i~~h~~g 142 (251)
+.+..++..++....+.....+......+.. ....+.++++++|+++|++++|||+|++|..+
T Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~al~~agl~~~did~~~~Hq~~ 893 (979)
T 3tsy_A 814 DPDISIERPLFQLVSAAQTFIPNSAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGISDWNSLFWIAHPGG 893 (979)
T ss_dssp SCCSSSCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHGGGTCCCGGGSEEEECCSC
T ss_pred CCCccccCcceEEEeeeeEEecCchhheEEEEecCceEEEEchHHHHHHHHHHHHHHHHHHhhcCCCCcccceEEECCCC
Confidence 2223344556666666555444332211110 01336789999999999999999999999988
Q ss_pred CcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccc
Q 040515 143 TPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLT 221 (251)
Q Consensus 143 t~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~ 221 (251)
+...|.+|. .++-... .+..+ ..-..+||+.+||=.+.|.++...++.|-.
T Consensus 894 ~~i~~~~~~-----~lgl~~~--k~~~~~~~l~~~GNtssasi~~~L~~~~~~~~~G~~--------------------- 945 (979)
T 3tsy_A 894 PAILDAVEA-----KLNLDKK--KLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGER--------------------- 945 (979)
T ss_dssp HHHHHHHHH-----HHTCCTT--TTHHHHHHHHHHCBCTTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred hHHHHHHHH-----HcCCChH--HHHHHHHHHHHcCCcchhhHHHHHHHHHhhhccccc---------------------
Confidence 776555433 2332111 12211 123468999999988888777655544320
Q ss_pred cCCCCCCcEEEEecccccceeeeeEeee
Q 040515 222 ASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 222 ~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
........+.++.+||.|-+..+++|+-
T Consensus 946 v~~g~~~~~~ll~~~G~G~t~~~~~l~~ 973 (979)
T 3tsy_A 946 ATTGEGLDWGVLFGFGPGLTIETVVLHS 973 (979)
T ss_dssp SBTTTTCSEEEEEEECGGGEEEEEEEEC
T ss_pred ccCCCCcceeEEEEeCCchHHHHHHHHh
Confidence 0111234677888999999999998874
|
| >1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=111.43 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=118.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++|+++|+|++.||..|.++|++|.++.+||+|+|. .... +.. .....|.+++..+.++.
T Consensus 103 ~~~~v~~aC~sg~~Al~~A~~~I~sg~~~~vLvvg~e~-s~~~----~~~-------------~~~~~~GdGA~A~vl~~ 164 (396)
T 1xpm_A 103 RCFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT-ARYG----LNS-------------GGEPTQGAGAVAMVIAH 164 (396)
T ss_dssp EEEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE-ECCC----TTC-------------SSGGGCEEEEEEEEEEE
T ss_pred eEEEeccccHHHHHHHHHHHHHHHcCCCCEEEEEeehh-hccc----cCC-------------CCCcccccceEEEEecc
Confidence 67899999999999999999999999999999999996 2221 000 01233444444443332
Q ss_pred hhhcCCeEEEEEeeeeecC-CCCCCCCCCC------ChHH--------HHHHHHHHHHHcCCCCCCccEEEecCCCCcCC
Q 040515 82 AKKRGAKIYAEVRGYGMSG-DAHHITQPHI------DGKG--------AILAMTRALKQSGLQSHQVDYVNAHATSTPLG 146 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~-~~~~~~~~~~------~~~~--------~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~ 146 (251)
...++....+.+... +......|.+ ++.. +..+++++|+++|++++|||+|..|.++++..
T Consensus 165 ----~~~i~~~~~~~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl~~~did~~~~H~~~~~~~ 240 (396)
T 1xpm_A 165 ----NPSILALNEDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFASLCFHVPFTKMG 240 (396)
T ss_dssp ----SCSSEEECSCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSSHHHH
T ss_pred ----CCceEEEEeccccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEecCCchHHH
Confidence 123444444333222 2222112211 3433 67889999999999999999999999998876
Q ss_pred cHHHHHHHHHHhh---ccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccC
Q 040515 147 DTVEATAIRTVFS---DHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTAS 223 (251)
Q Consensus 147 D~~E~~a~~~~~~---~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~ 223 (251)
|.+....+....+ ++....-.|-..+...+||+.+||-.+.|..++ +.+.+
T Consensus 241 ~~~~~~l~~~~~~~~~e~~~~~~~~s~~~~~~~GN~~saSi~l~L~~~l---~~~~l----------------------- 294 (396)
T 1xpm_A 241 KKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSLYLSLISLL---ENRDL----------------------- 294 (396)
T ss_dssp HHHHHTTGGGSCHHHHHHHHHHHHHHTTGGGGTCCCGGGHHHHHHHHHH---HHSCC-----------------------
T ss_pred HHHHHHHHhhcccCCHHHHHHHhhhhhhhhhhcCchHHHHHHHHHHHHH---HcCCC-----------------------
Confidence 6654322111000 000000001112235699999999777776654 22221
Q ss_pred CCCCCcEEEEecccccceeeeeEee
Q 040515 224 KDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 224 ~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+.+.+++.+||.|-+...++++
T Consensus 295 --~~Gd~ill~s~GsG~~~~~~~~~ 317 (396)
T 1xpm_A 295 --QAGETIGLFSYGSGSVGEFYSAT 317 (396)
T ss_dssp --CTTCEEEEEEEETTTEEEEEEEE
T ss_pred --CCCCEEEEEEECcchhheEEEEE
Confidence 12356777788877555555554
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.1e-11 Score=99.10 Aligned_cols=189 Identities=17% Similarity=0.148 Sum_probs=114.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+. ....+..|.+.+....++.
T Consensus 111 ~~~~v~~~C~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~~---------------d~~~~~lfGDGA~A~vl~~ 175 (323)
T 3il3_A 111 ISFDLAAACTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKLDET---------------DRSTVVLFGDGAGAVILEA 175 (323)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGSCCTT---------------CTTTTTTBCEEEEEEEEEE
T ss_pred cEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEEeeccccccCcc---------------ccccccccccceEEEEEEE
Confidence 6789999999999999999999999999999999999854332110 0012334555544443322
Q ss_pred hhhcCCeEEEEEeeeeecCCCCC---CCCC------------CCC--------hHHHHHHHHHHHHHcCCCCCCccEEEe
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAHH---ITQP------------HID--------GKGAILAMTRALKQSGLQSHQVDYVNA 138 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~~---~~~~------------~~~--------~~~~~~a~~~al~~Agi~~~dId~i~~ 138 (251)
.. ...+ .++...+++.. ...| ..+ ...+..+++++|+++|++++|||++..
T Consensus 176 ~~--~~~i----~~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~did~~v~ 249 (323)
T 3il3_A 176 SE--QEGI----ISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEETLLANNLDKKDLDWLVP 249 (323)
T ss_dssp ES--SCCE----EEEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHHHHTTTCCTTTCCEEEE
T ss_pred cC--CCCe----EEEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEE
Confidence 11 1122 12222222110 0000 001 123456788999999999999999999
Q ss_pred cCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCC
Q 040515 139 HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFM 218 (251)
Q Consensus 139 h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~ 218 (251)
|-.+... ...+.+.++-.. ..++. .-..+||+.+|+=.+.|..+ ++.+.
T Consensus 250 Hq~~~~i-----~~~~~~~lgl~~--ek~~~--~l~~~GNt~sasi~~~L~~~---~~~g~------------------- 298 (323)
T 3il3_A 250 HQANLRI-----ITATAKKLEMDM--SQVVV--TLDKYANNSAATVPVALDEA---IRDGR------------------- 298 (323)
T ss_dssp CCSCHHH-----HHHHHHHTTCCG--GGBCC--CHHHHCBCGGGHHHHHHHHH---HHTTS-------------------
T ss_pred cCCCHHH-----HHHHHHHcCcCH--HHhhc--cHhhcCchHHHHHHHHHHHH---HHcCC-------------------
Confidence 9655432 233333333211 11222 22357999999866665554 33332
Q ss_pred ccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 219 PLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 219 ~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++.+||.|-+..++||+
T Consensus 299 ------~~~Gd~vll~~~G~G~t~~~~~l~ 322 (323)
T 3il3_A 299 ------IQRGQLLLLEAFGGGWTWGSALVR 322 (323)
T ss_dssp ------SCTTCEEEEEEEETTTEEEEEEEE
T ss_pred ------CCCCCEEEEEEEehhheeEEEEEE
Confidence 122356788899999999998886
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=98.20 Aligned_cols=195 Identities=13% Similarity=0.061 Sum_probs=111.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|++.|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+.... .+..|.+.+....++.
T Consensus 134 ~~~~v~~~C~s~~~Al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~~dr~---------------~~~lfGDGAaA~vl~~ 198 (365)
T 3gwa_A 134 GALDVNLGCSGYVYGLSLAKGLVETGAARCVLLLTADTYSKYLHPLDKS---------------VRTLFGDGASATAVIA 198 (365)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGSCTTCHH---------------HHTTBCCEEEEEEEEE
T ss_pred eEEEecccChHHHHHHHHHHHHHHcCCCCEEEEEEEchhhccCCccccc---------------ccccccceeEEEEEEe
Confidence 5788999999999999999999999999999999999966543211000 0112333322222111
Q ss_pred hhhcCCeEEEEEee-eee-------cCCCCCC--------------------CCCCCC--------hHHHHHHHHHHHHH
Q 040515 82 AKKRGAKIYAEVRG-YGM-------SGDAHHI--------------------TQPHID--------GKGAILAMTRALKQ 125 (251)
Q Consensus 82 A~~~g~~~~a~i~g-~~~-------~~~~~~~--------------------~~~~~~--------~~~~~~a~~~al~~ 125 (251)
.......+.....+ .+. ...+... .....+ ...+.++++++|++
T Consensus 199 ~~~~~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~~~~i~~~L~~ 278 (365)
T 3gwa_A 199 EHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAADRLLAL 278 (365)
T ss_dssp ECSSSCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHH
Confidence 00000001100000 000 0000000 000001 13445778999999
Q ss_pred cCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCC
Q 040515 126 SGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLN 205 (251)
Q Consensus 126 Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~ 205 (251)
+|++++|||+|..|-.+... ...+.+.++-... .++ ..-..+||+.+|+=.+.|.++ ++.+.
T Consensus 279 ~gl~~~did~~v~Hq~n~~i-----~~~~~~~Lgl~~e--k~~--~~l~~~GNtssAsipl~L~~~---~~~g~------ 340 (365)
T 3gwa_A 279 AGEPRENIDCFVLHQANRFM-----LDALRKKMKIPEH--KFP--VLMEHCGNTVSSTLPLALETM---RANGT------ 340 (365)
T ss_dssp HTCCGGGCSEEEECCCCHHH-----HHHHHHHHTCCGG--GSC--CCCTTTCBCGGGHHHHHHHHH---HHTTC------
T ss_pred cCCCHHHCCEEEEcCCCHHH-----HHHHHHHhCCCHH--HHH--HHHhcccchHHHHHHHHHHHH---HHcCC------
Confidence 99999999999999655443 3333444432111 122 223578999999866554443 33332
Q ss_pred CCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 206 LAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..+...+++.+||.|-+..++||+
T Consensus 341 -------------------~~~Gd~vll~~fG~G~t~~~~ll~ 364 (365)
T 3gwa_A 341 -------------------LARGMRLMLLGFGVGYSWAGCLVN 364 (365)
T ss_dssp -------------------CCTTCEEEEEEEETTTEEEEEEEE
T ss_pred -------------------CCCCCEEEEEEEehhheeEEEEEE
Confidence 123457788899999999998886
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.7e-10 Score=95.09 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=113.7
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+. ....+..|.+.+....++.
T Consensus 169 ~~~dv~~aC~g~~~aL~~A~~~i~~g~~~~vLvvg~E~~S~~~d~~---------------dr~t~~lFGDGA~A~vl~~ 233 (392)
T 3led_A 169 FAFDMNVACSSATFGLKTAADFVGGGSVDAVLMVNPEICSGHLNFR---------------DRDSHFIFGDVATAAIVER 233 (392)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGGGGCCTT---------------CTTTTTTBCEEEEEEEEEE
T ss_pred eEEEECCccHHHHHHHHHHHHHHHCCCCCEEEEEeehhcCCcCCcC---------------cccCCcccccccEEEEEEe
Confidence 6789999999999999999999999999999999999854322110 0023445666665554332
Q ss_pred hhhcCCeEEEEEeeeeecCCCCCC----------------C----CCCCCh--------HHHHHHHHHHHHHcCCCCCCc
Q 040515 82 AKKRGAKIYAEVRGYGMSGDAHHI----------------T----QPHIDG--------KGAILAMTRALKQSGLQSHQV 133 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~~~~----------------~----~~~~~~--------~~~~~a~~~al~~Agi~~~dI 133 (251)
..... . ...|.+....+++... . ....++ ..+..+++++|+++|++++||
T Consensus 234 ~~~~~-~-~~~i~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~~~i~~~L~~~gl~~~dI 311 (392)
T 3led_A 234 ADDAQ-G-GWSILGTKLKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVSEMIIEHAREIGIDPHGL 311 (392)
T ss_dssp GGGCC-S-SEEEEEEEEEECCCSSEEBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred cCCCC-C-CCeEEEEEEEEccccccccCCCcccCCCccccccccceEEechHHHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 21110 0 1123333222221100 0 000011 234467889999999999999
Q ss_pred cEEEecCCCCcCCcHHHHHHHHH-HhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 134 DYVNAHATSTPLGDTVEATAIRT-VFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 134 d~i~~h~~gt~~~D~~E~~a~~~-~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
|+|..|-.+... ..++.+ +++-.......+ ..-..+||+.+|+=.+.|.+ ++ +.
T Consensus 312 d~~v~Hqan~~i-----~~~~~~~llgl~~~~~k~~--~~l~~~GNtssAsipl~L~~----~~-~~------------- 366 (392)
T 3led_A 312 KRMWLHQANINM-----NEIIGRKVLGRDPTRDENV--IILDDYANTSSAGSIIAFHK----HQ-DD------------- 366 (392)
T ss_dssp SEEEECSSCHHH-----HHHHHHHHHTSCCCTTTBC--CCHHHHCBCGGGHHHHHHHH----CC-TT-------------
T ss_pred cEEEEcCCCHHH-----HHHHHHHhcCCCCCHHHHH--HHHhhhCccHHHHHHHHHHH----Hh-CC-------------
Confidence 999999554332 222322 233111111122 12246799988875544322 11 11
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+...+++.+||.|-+..++||++
T Consensus 367 ------------~~~Gd~vll~gfG~G~t~~~~ll~~ 391 (392)
T 3led_A 367 ------------MAQGDLGLICSFGAGYSAGTVFVQK 391 (392)
T ss_dssp ------------CCTTCEEEEEEEETTTEEEEEEEEE
T ss_pred ------------CCCCCEEEEEEEChhhEeEEEEEEE
Confidence 1223578888999999999999985
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=97.80 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=115.4
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcC--EEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccch
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSD--VMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFEL 79 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d--~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~ 79 (251)
|++.|+.+|+|++.||..|.++|++|.++ .+||+|+|.++.+.. .+. .+..+..|.+.+....+
T Consensus 108 ~~~~v~~aC~~~~~al~~A~~~i~sg~~~~~~vLvvg~e~~s~~~~----------~~~----~~~~~~lfGDGA~A~vl 173 (357)
T 3s3l_A 108 PAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPRI----------DRW----NSVDVTMYGDGAAALVL 173 (357)
T ss_dssp CEEEEECGGGHHHHHHHHHHHHHHTTSSSSSEEEEEEEECCCTTTC----------CTT----TSSSSCCBCCEEEEEEE
T ss_pred cEEEEcCccHHHHHHHHHHHHHHHcCCCCCCEEEEEEEeccccccc----------ccc----cccCCcccccccEEEEE
Confidence 67899999999999999999999999999 999999999664210 000 00123345555544433
Q ss_pred hhhhhcCCeEEEEEeeeeecCCCCC---------CCCC------CCC---------------------hHHHHHHHHHHH
Q 040515 80 EHAKKRGAKIYAEVRGYGMSGDAHH---------ITQP------HID---------------------GKGAILAMTRAL 123 (251)
Q Consensus 80 ~~A~~~g~~~~a~i~g~~~~~~~~~---------~~~~------~~~---------------------~~~~~~a~~~al 123 (251)
+.. .+. ..|.++...+++.. ...+ ... ...+.++++++|
T Consensus 174 ~~~--~~~---~~i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~i~~~L 248 (357)
T 3s3l_A 174 STR--DGF---ARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELADLPDLTHRYIDLLVAAKTQAL 248 (357)
T ss_dssp ESS--CCS---EEEEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHH
T ss_pred ecC--CCC---CeEEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 221 111 12333333333210 0000 000 124556788999
Q ss_pred HHcCCCCCCccEEEe-cCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccC
Q 040515 124 KQSGLQSHQVDYVNA-HATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPL 202 (251)
Q Consensus 124 ~~Agi~~~dId~i~~-h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~ 202 (251)
+++|++++|||++.. |-.... .+.+ .+.++-... +++. .+...+||+.+|+=.+.|.+++ +.+.
T Consensus 249 ~~~gl~~~did~~v~~hq~~~~-~~~~-----~~~lgl~~e--k~~~-~~~~~~GNt~aAsipl~L~~~~---~~g~--- 313 (357)
T 3s3l_A 249 EDAGTAIEDIAHAVIPVSRRGT-GHEL-----HDLLGLPDE--RTSW-AYGRTTGHVGAGDQYAGLAHLV---ENAL--- 313 (357)
T ss_dssp HHTTCCGGGCSEEECCSCCCCS-SCCH-----HHHHTSCGG--GBTH-HHHHHHCBCTTCHHHHHHHHHH---HTTC---
T ss_pred HHcCCCHHHCCEEEecCcChHH-HHHH-----HHHcCCCHH--HhHH-HhccccccchHhHHHHHHHHHH---HcCC---
Confidence 999999999999995 866655 4433 222221111 1221 2223479999988666655543 3332
Q ss_pred cCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 203 TLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+...+++.+||.|-+..+++|+-
T Consensus 314 ----------------------l~~Gd~vll~~fG~G~t~~a~ll~~ 338 (357)
T 3s3l_A 314 ----------------------VQPGDRVLLFGGGAGYTCTAAVVEI 338 (357)
T ss_dssp ----------------------CCTTCEEEEECCBTTTEEEEEEEEE
T ss_pred ----------------------CCCCCEEEEEEEchhhhheeeeEEe
Confidence 1224578888999998999999874
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.3e-10 Score=94.22 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=112.4
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|++.|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+... ....+..|.+.+....++.
T Consensus 127 ~~~~v~~aC~s~~~Al~~A~~~i~sG~~~~vLvvg~e~~S~~~~~~d~-------------~~~t~~lfGDGAaA~vl~~ 193 (359)
T 3h78_A 127 PVLDIRAQASGLLYGLQMARGQILAGLARHVLVVCGEVLSKRMDCSDR-------------GRNLSILLGDGAGAVVVSA 193 (359)
T ss_dssp CEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEECGGGCCCSTT-------------THHHHTTBCEEEEEEEEEC
T ss_pred cEEEECCHhHHHHHHHHHHHHHHHCCCcCEEEEEEEchhcccCCcccc-------------cccccceecceeEEEEEEe
Confidence 688999999999999999999999999999999999986544211100 0001122443333332221
Q ss_pred hhhcCCeEEEEEeee-ee------cCC-CC-CCC------------CCCCC--------hHHHHHHHHHHHHHcCCCCCC
Q 040515 82 AKKRGAKIYAEVRGY-GM------SGD-AH-HIT------------QPHID--------GKGAILAMTRALKQSGLQSHQ 132 (251)
Q Consensus 82 A~~~g~~~~a~i~g~-~~------~~~-~~-~~~------------~~~~~--------~~~~~~a~~~al~~Agi~~~d 132 (251)
....+..++...... +. ... +. ... ....+ ...+..+++++|+++|++++|
T Consensus 194 ~~~~~~~i~~~~~~s~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~~~~~~i~~~L~~~gl~~~d 273 (359)
T 3h78_A 194 GESLEDGLLDLRLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHASQTLVRIAGEMLAAHELTLDD 273 (359)
T ss_dssp CSCSSSEEEEEEEEECGGGGGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred cCCCCCceEEEEEEEccCccceEEeCCCCCccCCccccccccccCCceEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 100011221111110 00 000 00 000 00001 123557789999999999999
Q ss_pred ccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 133 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 133 Id~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
||+|..|-.+... ...+.+.++-... .++. .-..+||+.+|+=.+.|.+++..
T Consensus 274 id~~v~Hq~n~~i-----~~~~~~~lgl~~e--k~~~--~l~~~GNt~sAsi~l~L~~~~~~------------------ 326 (359)
T 3h78_A 274 IDHVICHQPNLRI-----LDAVQEQLGIPQH--KFAV--TVDRLGNMASASTPVTLAMFWPD------------------ 326 (359)
T ss_dssp CSEEEECCSCHHH-----HHHHHHHHTCCGG--GBCC--CHHHHCBCGGGHHHHHHHHHGGG------------------
T ss_pred CCEEEECCCCHHH-----HHHHHHHhCcCHH--Hhhh--hhhcccchHHHHHHHHHHHHHHh------------------
Confidence 9999999655443 2333343432111 1222 22367999999866665554311
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
..+.+.+++.+||.|-+..+++|+-
T Consensus 327 ------------l~~Gd~vll~~fG~G~t~~~~ll~~ 351 (359)
T 3h78_A 327 ------------IQPGQRVLVLTYGSGATWGAALYRK 351 (359)
T ss_dssp ------------SCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred ------------CCCCCEEEEEEEchhhhheeeeEEe
Confidence 1123567777999999999999874
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=97.38 Aligned_cols=195 Identities=13% Similarity=0.044 Sum_probs=111.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|.++|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+... ..+..|.+.+....++.
T Consensus 120 ~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~~d~---------------~~~~lfGDGA~A~vl~~ 184 (354)
T 4efi_A 120 LALDINLGCSGYPQALWLGMNLIQTGAAKRVLLAVGDTISKMIDPTDR---------------STSLLFGDAGTMTALET 184 (354)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGGCCTTCH---------------HHHTTBCCEEEEEEEEE
T ss_pred cEEeeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEechhcccCCcccc---------------ccccccccceeEEEEee
Confidence 678999999999999999999999999999999999986543221100 01122333322222211
Q ss_pred hhhcCCeEEEEEeeeeec-------CCCCC--------------CCCCCCC--------hHHHHHHHHHHHHHcCCCCCC
Q 040515 82 AKKRGAKIYAEVRGYGMS-------GDAHH--------------ITQPHID--------GKGAILAMTRALKQSGLQSHQ 132 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~-------~~~~~--------------~~~~~~~--------~~~~~~a~~~al~~Agi~~~d 132 (251)
.... ......+...+.. ..+.. ......+ ...+..+++++|+++|++++|
T Consensus 185 ~~~~-~~~~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~~gl~~~d 263 (354)
T 4efi_A 185 SNGD-AAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLNAVPKLVSRTLDIAGRDKDS 263 (354)
T ss_dssp CCSC-CEEEEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred cCCC-CceEEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 0000 0000111100000 00000 0000001 134556788999999999999
Q ss_pred ccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCC
Q 040515 133 VDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPI 212 (251)
Q Consensus 133 Id~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~ 212 (251)
||+|..|-.+... ..++.+.++-... +++. .-..+||+.+|+=.+.|..++ +.+.+
T Consensus 264 id~~v~Hq~~~~i-----~~~~~~~Lgl~~e--k~~~--~l~~~GNt~sasi~~~L~~~~---~~g~~------------ 319 (354)
T 4efi_A 264 YDAFLFHQANLFM-----LKHLAKKAGLPAE--RVPV--NIGEYGNTSCASIPLLITTEL---KDRLK------------ 319 (354)
T ss_dssp CSEEEECCCCHHH-----HHHHHHHTTCCGG--GSCC--CHHHHCBCGGGHHHHHHHHHS---HHHHH------------
T ss_pred CCEEEeCCCCHHH-----HHHHHHHhCcCHH--HHHH--HHhhhCcHHHHHHHHHHHHHH---HhCCC------------
Confidence 9999999655432 2333333332111 1221 225689999998666655543 22221
Q ss_pred CCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 213 FNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
.+...+++.+||.|-+..+++|+-
T Consensus 320 -------------~~Gd~vll~~fG~G~t~~~~ll~~ 343 (354)
T 4efi_A 320 -------------EETLQLGMFGFGVGYSWASAALAV 343 (354)
T ss_dssp -------------HSCEEEEEEEEETTTEEEEEEEEE
T ss_pred -------------CCCCEEEEEEEchhhhheeeEEEE
Confidence 123567888999999999999874
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=85.58 Aligned_cols=188 Identities=18% Similarity=0.206 Sum_probs=105.5
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|+++|+.+|+|++.||..|.++|++|.++.+||+|+|.++....+. ....+..|.+.+....++.
T Consensus 105 ~~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~~~---------------dr~~~~lfGDGA~A~vl~~ 169 (321)
T 3il6_A 105 FAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETFSKMLDWT---------------DRSTAVLFGDGAAGVLIEA 169 (321)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHTSSCCCEEEEEEECGGGGSCTT---------------CTTTGGGBCCEEEEEEEEE
T ss_pred eEEEeCcccHHHHHHHHHHHHHHHCCCCCEEEEEEEccccccCCcc---------------ccccceeeccccEEEEEEE
Confidence 6789999999999999999999999999999999999864322110 0012334555444443322
Q ss_pred hhhcCCeEEEEEeeeeecCCC------------CCCC----------CCCCChHH----HHHHHHHHHHHcCCCCCCccE
Q 040515 82 AKKRGAKIYAEVRGYGMSGDA------------HHIT----------QPHIDGKG----AILAMTRALKQSGLQSHQVDY 135 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~~~------------~~~~----------~~~~~~~~----~~~a~~~al~~Agi~~~dId~ 135 (251)
... ..+. ++...+++ .... ....++.. ..+.+.++++++ +.++|||+
T Consensus 170 ~~~--~~i~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~-l~~~did~ 242 (321)
T 3il6_A 170 AET--PHFL----NEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQNILSL-VTDETVDY 242 (321)
T ss_dssp ESS--CCEE----EEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHHHHHHHTT-CCGGGCSE
T ss_pred cCC--CCEE----EEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHHHHHHHHH-cCcccCCE
Confidence 111 1121 11111111 0000 00011221 122333344433 33899999
Q ss_pred EEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCC
Q 040515 136 VNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND 215 (251)
Q Consensus 136 i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 215 (251)
+..|-.+... ..++.+.++-... +++ ..-..+||+.+|+=.+.|.++ ++.+.+
T Consensus 243 ~v~Hq~~~~i-----~~~~~~~lgl~~e--k~~--~~l~~~GNt~sasi~~~L~~~---~~~g~~--------------- 295 (321)
T 3il6_A 243 LLLHQANVRI-----IDKIARKTKISRE--KFL--TNMDKYGNTSAASIPILLDEA---VENGTL--------------- 295 (321)
T ss_dssp EEECCSCHHH-----HHHHHHHHTCCGG--GBC--CCGGGTCBCGGGHHHHHHHHH---HHTTSS---------------
T ss_pred EEEcCCCHHH-----HHHHHHHcCcCHH--Hhh--hhHhhcccHHHHHHHHHHHHH---HHhCCC---------------
Confidence 9999555432 3334444432111 122 234578999999866655544 333321
Q ss_pred CCCccccCCCCCC--cEEEEecccccceeeeeEee
Q 040515 216 NFMPLTASKDMPI--SAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 216 ~~~~~~~~~~~~~--~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+. ..+++.+||.|-+..++||+
T Consensus 296 ----------~~G~~d~vll~~fG~G~t~~~~~l~ 320 (321)
T 3il6_A 296 ----------ILGSQQRVVLTGFGGGLTWGSLLLT 320 (321)
T ss_dssp ----------CTTSCCEEEEEEEETTTEEEEEEEE
T ss_pred ----------CCCCCCEEEEEEEehhheeEEEEEE
Confidence 122 57888899999999999886
|
| >3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-09 Score=93.61 Aligned_cols=207 Identities=11% Similarity=0.068 Sum_probs=114.5
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCC--CcccccccCCCccchh
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQ--EASRPFDCGRDGFELE 80 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~f~~~~~g~~~~ 80 (251)
.++++.+|+|++.||..|.++|++|.++.+||+|+|.++.... ... +..+. ..+..|.+.+..+.++
T Consensus 153 ~~~v~~aC~s~~~al~~A~~~i~~g~~~~vLvvg~e~~s~~~~----------~~~-d~~~~~~~~~~lfGDGA~A~vl~ 221 (387)
T 3a5r_A 153 FMFYHLGCYAGGTVLRLAKDIAENNKGARVLIVCSEMTTTCFR----------GPS-ETHLDSMIGQAILGDGAAAVIVG 221 (387)
T ss_dssp EEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECCTTTCC----------CCC-SSCCSSTTHHHHBCCEEEEEEEE
T ss_pred eeeEccccHHHHHHHHHHHHHHHhCCCCEEEEEEEeccchhhc----------CCC-ccchhhccccceeccceeEEEEe
Confidence 7889999999999999999999999999999999998543110 000 00000 0111233333332221
Q ss_pred hhhhcC-CeEEEEEeeeeecC--CCCC--------------C--CCCCCChHHHHHHHHHHHHHcCCC-CCCccEEEecC
Q 040515 81 HAKKRG-AKIYAEVRGYGMSG--DAHH--------------I--TQPHIDGKGAILAMTRALKQSGLQ-SHQVDYVNAHA 140 (251)
Q Consensus 81 ~A~~~g-~~~~a~i~g~~~~~--~~~~--------------~--~~~~~~~~~~~~a~~~al~~Agi~-~~dId~i~~h~ 140 (251)
.....+ ......+.+.+... +... + ..+......+..+++++|+++|++ .+|| ++..|-
T Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~~gl~d~~di-~~v~Hq 300 (387)
T 3a5r_A 222 ADPDLTVERPIFELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDAFTPLNISDWNSL-FWIAHP 300 (387)
T ss_dssp SSCCTTTCCCCEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHGGGTCCCGGGS-EEEECC
T ss_pred cCCCccccCCceEEEeeeEEEeCCChHhcCceEcCCCeEEEecchHHHHHHHHHHHHHHHHHHhcCCCChhhe-eEEECC
Confidence 110001 00011222222111 0000 0 000001234567889999999998 8888 899997
Q ss_pred CCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHHHHHHh-hCCccCcCCCCCCCCCCCCCCC
Q 040515 141 TSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLTIH-HGVAPLTLNLAKPDPIFNDNFM 218 (251)
Q Consensus 141 ~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~~~~l~-~~~ip~~~~~~~~~~~~~~~~~ 218 (251)
.+....|. +.+.++-.. ..+..+ .....+||+.+|+-.+.|..++..=+ .|.+
T Consensus 301 ~~~~i~~~-----~~~~lgl~~--ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~~~G~~------------------ 355 (387)
T 3a5r_A 301 GGPAILDQ-----VTAKVGLEK--EKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQA------------------ 355 (387)
T ss_dssp SCHHHHHH-----HHHHHTCCG--GGGHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCS------------------
T ss_pred CCHHHHHH-----HHHHcCCCh--HHhHHHHHHHHhcCCcchhHHHHHHHHHHHhccccCCC------------------
Confidence 76544333 333333211 113322 23467999999998887777654321 1100
Q ss_pred ccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 219 PLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 219 ~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.. ..+...+++.+||.|-+..+++|+..
T Consensus 356 --~~--G~~~d~vll~~fG~G~t~~~~ll~~~ 383 (387)
T 3a5r_A 356 --TT--GEGLEWGVLFGFGPGITVETVVLRSV 383 (387)
T ss_dssp --BT--TTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred --CC--CCCcceEEEEEecCcceeeehhheec
Confidence 00 01125788889999988899888753
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-09 Score=88.23 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=37.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+++.|+.+|++++.||..|..+|++|..+.+||+++|.++
T Consensus 115 ~a~di~~~C~g~~~aL~~A~~~i~~g~~~~~Lvv~~E~~s 154 (350)
T 4ewp_A 115 PAYDVSAACAGYCYGVAQADALVRSGTARHVLVVGVERLS 154 (350)
T ss_dssp CEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEGG
T ss_pred eEEEeecchhhHHHHHHHhhhhhhCCCccceeEeeeeece
Confidence 4678899999999999999999999999999999999754
|
| >1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=94.55 Aligned_cols=206 Identities=11% Similarity=0.088 Sum_probs=112.7
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh-hHH--HHhhhhhcccccCCCCCCcccccccCCCccch
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SMA--GFCKSRALTTKYNGTPQEASRPFDCGRDGFEL 79 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~ 79 (251)
+++++.+|+|++.||..|.++|++|.+|.+||+|+|.++... ... .+... ..+..|.+.+..+.+
T Consensus 180 ~~~v~~aCas~~~AL~~A~~~i~~G~~~~vLvvg~E~~s~~~~~~~d~~~~~~------------~~~~lfGDGA~A~vl 247 (413)
T 1xes_A 180 VGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSL------------VGQALFGDGASALIV 247 (413)
T ss_dssp EEEESCCTTHHHHHHHHHHHHHHTSTTCCEEEEEEECTTTTCCCCCTTCHHHH------------HHHHHBCCEEEEEEE
T ss_pred hceecCccHHHHHHHHHHHHHHHcCCCCEEEEEEehhhhhhhcCCCccchhhc------------ccceeEecccEEEEE
Confidence 788999999999999999999999999999999999865411 000 00000 000112222222211
Q ss_pred hhhhhcC-CeEEEEEeeeeec--CCCC--------------CC--CCCCCChHHHHHHHHHHHHHcCCC-CCCccEEEec
Q 040515 80 EHAKKRG-AKIYAEVRGYGMS--GDAH--------------HI--TQPHIDGKGAILAMTRALKQSGLQ-SHQVDYVNAH 139 (251)
Q Consensus 80 ~~A~~~g-~~~~a~i~g~~~~--~~~~--------------~~--~~~~~~~~~~~~a~~~al~~Agi~-~~dId~i~~h 139 (251)
+.....+ ......+.+.+.. .+.. .+ ..+......+..+++++|+++|++ .+|| ++.+|
T Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~~gl~d~~di-~~v~H 326 (413)
T 1xes_A 248 GADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCMVEAFSQFKISDWNKL-FWVVH 326 (413)
T ss_dssp ESSCCTTTSCCSEEEEEEEEEECTTCTTTEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHGGGTCCCGGGS-EEEEC
T ss_pred ecCCCccccCCceEEEeeeeEEcCCChhhcCcEEecCceEEEecccHHHHHHHHHHHHHHHHHHhcCCCCccce-eEEEC
Confidence 1100000 0000112221110 0000 00 000011245667889999999998 8888 79999
Q ss_pred CCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHHHHHHh-hCCccCcCCCCCCCCCCCCCC
Q 040515 140 ATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLTIH-HGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 140 ~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~~~~l~-~~~ip~~~~~~~~~~~~~~~~ 217 (251)
-.+....| ++.+.++-.. ..+..+ .....+||+.+|+-.+.|.+++..=+ .|.+
T Consensus 327 q~~~~i~~-----~~~~~Lgl~~--ek~~~s~~~l~~~GNtssAsi~~~L~~~~~~g~~~G~~----------------- 382 (413)
T 1xes_A 327 PGGRAILD-----RVEAKLNLDP--TKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCS----------------- 382 (413)
T ss_dssp CSCHHHHH-----HHHHHTTCCT--TTTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCS-----------------
T ss_pred CCCHHHHH-----HHHHHcCCCh--HHhHHHHHHHHhcCcCchhhHHHHHHHHHHhccccCCC-----------------
Confidence 66544322 2333343211 123322 23456899999998887777654321 1110
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.. ..+...+++.+||.|-+..+++|+..
T Consensus 383 ---~~--G~~~d~vll~~fG~G~t~~~~ll~~~ 410 (413)
T 1xes_A 383 ---TT--GEGLEMGVLFGFGPGLTIETVVLKSV 410 (413)
T ss_dssp ---BT--TTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred ---CC--CCCcceEEEEEecCCcEEeEEEEEec
Confidence 00 01125788889999999999998753
|
| >2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=89.75 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=79.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCc--CEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccch
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDS--DVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFEL 79 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~--d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~ 79 (251)
|++.|+.+|+|++.||..|.++|++|.+ +.+||+|+|.+. + ... .....|.+++..+.+
T Consensus 108 ~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~-~------------~~~------~~~~~fGDGA~A~ll 168 (450)
T 2f82_A 108 EGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAV-Y------------AEG------PARPTGGAAAIAMLI 168 (450)
T ss_dssp BCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEEC-C------------SSS------TTGGGCEEEEEEEEE
T ss_pred eEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeecc-c------------cCC------CCCcccccceEEEEe
Confidence 5788999999999999999999999998 999999999742 1 000 112234444443333
Q ss_pred hhhhhcCCeEEEEEeeeeecC--CCCCC----CCCCCCh--------HHHHHHHHHHHH------HcCCCCCCccEEEec
Q 040515 80 EHAKKRGAKIYAEVRGYGMSG--DAHHI----TQPHIDG--------KGAILAMTRALK------QSGLQSHQVDYVNAH 139 (251)
Q Consensus 80 ~~A~~~g~~~~a~i~g~~~~~--~~~~~----~~~~~~~--------~~~~~a~~~al~------~Agi~~~dId~i~~h 139 (251)
+... .. .+.....|..... +.... ..+..++ ..+..+++++++ ++|++++|||+|..|
T Consensus 169 ~~~~-~~-~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~~~~~agl~~~did~~v~H 246 (450)
T 2f82_A 169 GPDA-PI-VFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDADYFVFH 246 (450)
T ss_dssp ESSC-SE-EEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGCSEEEEC
T ss_pred ccCC-ce-EEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhhhccccCCChhhcCEEEec
Confidence 2110 00 1111122322221 00000 0112222 234567778886 899999999999999
Q ss_pred CCCCcCCcHHHHH
Q 040515 140 ATSTPLGDTVEAT 152 (251)
Q Consensus 140 ~~gt~~~D~~E~~ 152 (251)
..++...+.+...
T Consensus 247 q~~~~i~~~~~~~ 259 (450)
T 2f82_A 247 SPYNKLVQKSFAR 259 (450)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHH
Confidence 9988876665443
|
| >3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-08 Score=85.75 Aligned_cols=205 Identities=14% Similarity=0.089 Sum_probs=110.1
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh-hHHH--HhhhhhcccccCCCCCCcccccccCCCccch
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL-SMAG--FCKSRALTTKYNGTPQEASRPFDCGRDGFEL 79 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~ 79 (251)
++.++.+|++++.||..|.++|++|.++.+||+|+|.++... .+.. +... ..+..|.+++....+
T Consensus 157 ~~~v~~~C~g~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~~~~~d~~~~~~------------~~~~lFGDGAaA~vl 224 (393)
T 3ov2_A 157 LMIYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFRGPNEGDFEAL------------AGQAGFGDGAGAVVV 224 (393)
T ss_dssp EEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECGGGTCCCCCTTCHHHH------------HHHHHBCCEEEEEEE
T ss_pred eeEEcCccHHHHHHHHHHHHHHHcCCCCEEEEEEEeccchhccCCcccchhhh------------cccccccCccEEEEE
Confidence 688999999999999999999999999999999999864211 0000 0000 001112222222211
Q ss_pred hhhhhcC--CeEEEEEeeeee-------------cCCCCCCCCCCCC-----hHHHHHHHHHHHHHcCCCC-CCccEEEe
Q 040515 80 EHAKKRG--AKIYAEVRGYGM-------------SGDAHHITQPHID-----GKGAILAMTRALKQSGLQS-HQVDYVNA 138 (251)
Q Consensus 80 ~~A~~~g--~~~~a~i~g~~~-------------~~~~~~~~~~~~~-----~~~~~~a~~~al~~Agi~~-~dId~i~~ 138 (251)
+.....+ ...+-.+..... ..++..... ... ...+..+++++|+++|+++ +|| ++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~gl~~~~di-~~v~ 302 (393)
T 3ov2_A 225 GADPLEGIEKPIYEIAAAMQETVAESQGAVGGHLRAFGWTFYF-LNQLPAIIADNLGRSLERALAPLGVREWNDV-FWVA 302 (393)
T ss_dssp ESSCCTTTCCCSEEEEEEEEEECTTCTTSEEEEEETTEEEEEE-CTTHHHHHHTTSHHHHHHHHGGGTCCSGGGS-EEEE
T ss_pred EecCCCcccCceeEEEecCcEEecCCcccCceeeeCCceEEEE-CcHHHHHHHHHHHHHHHHHHHHcCCCcccCc-EEEE
Confidence 1000000 000100100000 000000000 011 1123468899999999997 888 8999
Q ss_pred cCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHHHHH-HhhCCccCcCCCCCCCCCCCCC
Q 040515 139 HATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLT-IHHGVAPLTLNLAKPDPIFNDN 216 (251)
Q Consensus 139 h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~~~~-l~~~~ip~~~~~~~~~~~~~~~ 216 (251)
|-.+... ..++.+.++-... .++.+ .+-..+||+.+|+=.+.|-+++.. ++.|.+.
T Consensus 303 Hq~n~~i-----~~~v~~~Lgl~~e--k~~~s~~~l~~~GNtssAsip~~L~~~~~~~~~~g~~~--------------- 360 (393)
T 3ov2_A 303 HPGNWAI-----IDAIEAKLQLSPD--KLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRST--------------- 360 (393)
T ss_dssp CCCCHHH-----HHHHHHHHTCCTT--TTHHHHHHHHHHCBCGGGHHHHHHHHHHHHHHHTTCSB---------------
T ss_pred CCCChHH-----HHHHHHHcCCCHH--HHHHHHHHHHHhCChHHhHHHHHHHHHHHhhhhcCCcC---------------
Confidence 9544332 3334444432211 12221 123458999999977776665543 2223210
Q ss_pred CCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 217 FMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 217 ~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
...+...+++.+||.|-+..++||++.
T Consensus 361 -------~G~~~d~vll~~fG~G~t~~~~ll~~~ 387 (393)
T 3ov2_A 361 -------TGDGLQWGVLLGFGPGLSIETVVLRSM 387 (393)
T ss_dssp -------TTTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred -------CCCCCCeEEEEEECccceeeeeeeEEc
Confidence 001126788889999999999999875
|
| >3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.1e-08 Score=83.44 Aligned_cols=205 Identities=12% Similarity=0.068 Sum_probs=103.8
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhh-HHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALS-MAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
++.++.+|++++.||..|.++|++|.++.+||+|+|.++.... +.. .....+ ..+.-|.+++....++.
T Consensus 151 ~~~~~~~C~~~~~al~~A~~~i~sg~~~~vLvvg~E~~s~~~~~~~d-~~~~~~---------~~~~lFGDGAaA~vl~~ 220 (387)
T 3oit_A 151 TMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYFTGPDE-GCFRTL---------LVQGLFGDGAAAVIVGA 220 (387)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSSTTCEEEEEEEECGGGTCCCCCS-SSCHHH---------HHHHHBCCEEEEEEEES
T ss_pred eeEECchhHHHHHHHHHHHHHHhcCCCCEEEEEEEeccchhccCccc-cchHhh---------hcccccccceEEEEEec
Confidence 6889999999999999999999999999999999998641110 000 000000 01122333333322211
Q ss_pred hhhcCCeEEEEEeeeeec--------------CCCCCCCCCCCC-----hHHHHHHHHHHHHHc----CCCCCCcc--EE
Q 040515 82 AKKRGAKIYAEVRGYGMS--------------GDAHHITQPHID-----GKGAILAMTRALKQS----GLQSHQVD--YV 136 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~--------------~~~~~~~~~~~~-----~~~~~~a~~~al~~A----gi~~~dId--~i 136 (251)
...........+.+.+.. .++..... ... ...+..+++++|+++ |++ |+| +|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~~~~~L~~~~~~~gl~--d~d~~~~ 297 (387)
T 3oit_A 221 DADDVERPLFEIVSAAQTIIPESDHALNMRFTERRLDGVL-GRQVPGLIGDNVERCLLDMFGPLLGGDGGG--GWNDLFW 297 (387)
T ss_dssp SCCSSCCCCEEEEEEEEEECTTCTTSEEEEECSSSEEEEE-CTTHHHHHHHHHHHHHHHHTGGGCC--------GGGSEE
T ss_pred CCCcccCCceEEEecccEEeCCChhhccceeecCCeEEEE-CcHHHHHHHHHHHHHHHHHHHhhcccCCCC--cccccEE
Confidence 000000011122221111 11100000 011 234567788889999 987 666 99
Q ss_pred EecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCC
Q 040515 137 NAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFND 215 (251)
Q Consensus 137 ~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~ 215 (251)
..|-.+... ..++.+.++-... .++.+ .+-..+||+.+||=.+.|.++ +.+.+.+
T Consensus 298 v~Hq~n~~i-----l~~v~~~Lgl~~e--k~~~s~~~l~~~GNtssAsip~~L~~~----~~~~~~~------------- 353 (387)
T 3oit_A 298 AVHPGSSTI-----MDQVDAALGLEPG--KLAASRRVLSDYGNMSGATVIFALDEL----RRQRKEA------------- 353 (387)
T ss_dssp EECCCCHHH-----HHHHHHHHTCCTT--TTHHHHHHHHHHCBCGGGHHHHHHHHH----HHC-----------------
T ss_pred EECCCCHHH-----HHHHHHHcCCCHH--HHHHHHHHHHHhCchHHhHHHHHHHHH----HHhhhcc-------------
Confidence 999555443 3333333432111 12221 123357999999866655543 2211100
Q ss_pred CCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 216 NFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 216 ~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.. ...+...+++.+||.|-+..++||++.
T Consensus 354 -----G~-~g~~~d~vll~~fG~G~t~~~~ll~~~ 382 (387)
T 3oit_A 354 -----AA-AGEWPELGVMMAFGPGMTVDAMLLHAT 382 (387)
T ss_dssp ------------CCEEEEEEEETTTEEEEEEEEEC
T ss_pred -----CC-CCCCCCEEEEEEecccceeeeeeeEec
Confidence 00 001125788889999999999999875
|
| >3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.9e-09 Score=87.18 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=79.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
|.+.|+++|+|++.||..|..+|++|.++.+||+|+|.+++......+.. ......|. ...-|..++....++.
T Consensus 102 pafdV~~ACsg~~~AL~~Aa~~I~sG~~~~VLVVGaE~~S~aerq~r~p~-----e~g~q~p~-ta~~t~dGAGA~VL~~ 175 (347)
T 3lma_A 102 PFLCLFGACSTSMESIAISSALIDGGFAKRALAATSSHNATAERQFRYPT-----EYGGQKPG-TATSTVTGSGAVVLSQ 175 (347)
T ss_dssp CEEEBCCSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGGGTTCCC----------------------CCCEEEEEEEES
T ss_pred CEEEecChhHHHHHHHHHHHHHHhcCCCCEEEEEEeccccchhhhccCcc-----hhcccCCc-hhcEEccceeEEEEEe
Confidence 78999999999999999999999999999999999998765432111100 00000010 1111112222223321
Q ss_pred hhhcCCeEEEEEeeeeec--CCCCCCCCCCCCh----HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHH
Q 040515 82 AKKRGAKIYAEVRGYGMS--GDAHHITQPHIDG----KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIR 155 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~--~~~~~~~~~~~~~----~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~ 155 (251)
.+..+ .|++.... .| .....+...+ +...+++.+.|+++|++|+|+|+|..++.+.. -..-+.
T Consensus 176 ---~g~~p--~I~~~t~Gkvvd-~g~~d~~nmg~amaPaA~~ti~~~l~d~g~~~~d~D~ivtgdL~q~-----g~~il~ 244 (347)
T 3lma_A 176 ---QPGGI--KITSATVGRVID-LGITDSQDMGSAMAPAAADTIKQHLEDLGRTPDDYDLILTGDLSGV-----GSPILK 244 (347)
T ss_dssp ---SCCSE--EEEEEECCCCBC-CSCCCTTCHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEESCHHH-----HHHHHH
T ss_pred ---cCCCC--ceeeeeeeeeec-cCCCCCCCccccchHHHHHHHHHHHHHhCCCHHHcCEEecCChHHH-----HHHHHH
Confidence 12122 23332221 11 1122222222 34456788999999999999999997644321 233366
Q ss_pred HHhhcc
Q 040515 156 TVFSDH 161 (251)
Q Consensus 156 ~~~~~~ 161 (251)
.++.+.
T Consensus 245 ~l~~~~ 250 (347)
T 3lma_A 245 DLLKEE 250 (347)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666543
|
| >3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=83.30 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=37.4
Q ss_pred eeec-chhhHHHHHHHHHHHHHHHh----CCcCEEEEeCcCCCcChh
Q 040515 3 NHAA-VTACATGAHSIGDAARMIQF----GDSDVMVAGGTESSIDAL 44 (251)
Q Consensus 3 ~~tv-~~~casgl~Al~~A~~~I~~----G~~d~alvgg~e~~~~~~ 44 (251)
.+.| +.+|++++.||..|.++|++ |.++.+||+|+|.++...
T Consensus 164 ~~dv~~~~Csgg~~AL~~A~~~i~a~~~~G~~~~vLVvg~E~~S~~~ 210 (465)
T 3e1h_A 164 KVLLHGIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMV 210 (465)
T ss_dssp EEEECSCGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEECCGGGH
T ss_pred EEEecCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEEEeecchhc
Confidence 4777 79999999999999999997 999999999999965544
|
| >3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8e-08 Score=82.66 Aligned_cols=41 Identities=5% Similarity=-0.028 Sum_probs=37.8
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcC
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSID 42 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~ 42 (251)
|++.++.+|++++.||..|..+|++|.++.+||+|+|.+..
T Consensus 108 ~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~vLVvg~e~~s~ 148 (388)
T 3v4n_A 108 RSFEIKEAXYGATAGLQLAKNHVALHPDKKVLVVAADIAKY 148 (388)
T ss_dssp EEEEEESGGGHHHHHHHHHHHHHHHCTTCEEEEEEEEEECC
T ss_pred eEeehhhhhhHHHHHHHHHHHHHhcCCCCEEEEEEehhhcc
Confidence 56789999999999999999999999999999999998543
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=73.56 Aligned_cols=196 Identities=17% Similarity=0.039 Sum_probs=105.2
Q ss_pred eeec-chhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCccchhh
Q 040515 3 NHAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGFELEH 81 (251)
Q Consensus 3 ~~tv-~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~~~~~ 81 (251)
.+.+ +.+|++++.||..|.++|++|.++.+||+|+|.++....+........+ .+.-|.+++....++.
T Consensus 191 ~~~v~~~~Cagg~~AL~~A~~~i~ag~~~~vLvvg~E~~S~~~~~~d~~~~~lv----------~~~LFGDGAaAvvl~~ 260 (413)
T 3v7i_A 191 LLPATQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTTYQPADDTLESLI----------VRLLFADTAVAAVVTG 260 (413)
T ss_dssp EEEESSCGGGHHHHHHHHHHHHHHHCTTCEEEEEEEECGGGGCCSSCCSTTHHH----------HHHHBCCEEEEEEEES
T ss_pred EEEeeCCccHHHHHHHHHHHHHHhcCCCCEEEEEEEeccccccCccccchhhhh----------cceeeccccEEEEEEe
Confidence 3666 8999999999999999999999999999999986543211000000000 0223443333332211
Q ss_pred hhhcCCeEEEEEeeeeecC--CCCCC-----------CCCCC----ChHHHHHHHHHHHH------HcCCCCCCccEEEe
Q 040515 82 AKKRGAKIYAEVRGYGMSG--DAHHI-----------TQPHI----DGKGAILAMTRALK------QSGLQSHQVDYVNA 138 (251)
Q Consensus 82 A~~~g~~~~a~i~g~~~~~--~~~~~-----------~~~~~----~~~~~~~a~~~al~------~Agi~~~dId~i~~ 138 (251)
... .. +...+.+..... +.... ...+. ....+..+++++|+ ++|++ ||+|..
T Consensus 261 ~~~-~~-~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~v~~~v~~~~~~i~~~L~~~~~~~~~gl~---id~~v~ 335 (413)
T 3v7i_A 261 RPR-PE-SVLRLDAAWHHTLPGTRDLHRLETRADGTHFVMDRRGPRAVQETVTAMWEWLRVRYEDDPSSWH---PDVLLA 335 (413)
T ss_dssp SCC-TT-EEEEEEEEEEEECTTCTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTSSSCTTCC---CCEEEE
T ss_pred cCC-CC-CCEEEEccccEEeCCCccccCccccCCceEEEECcHHHHHHHHHHHHHHHHHhhccccccCCCc---eeEEEE
Confidence 000 00 111222221110 00000 00000 12235678889999 89987 999999
Q ss_pred cCCCCcCCcHHHHHHHHHHhhccCCCCcee-eecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCC
Q 040515 139 HATSTPLGDTVEATAIRTVFSDHATSGSLA-FSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNF 217 (251)
Q Consensus 139 h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~-v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~ 217 (251)
|-.+... ..++.+.+++.-....+. ....-. +||+.+|+=.+.|-+++ +.+.
T Consensus 336 Hq~~~~i-----l~~v~~~Lg~~l~~ek~~~s~~~l~-~GNtssAsi~~~L~~~~---~~~~------------------ 388 (413)
T 3v7i_A 336 HPGGTRV-----LEYMEQTMPDEWPSGLLSYSRDSYT-SGNRGGAAVFDILRRAH---DAGQ------------------ 388 (413)
T ss_dssp ECSSHHH-----HHHHHHHSCSSCCSCSTHHHHHHHT-TCBCGGGHHHHHHHHHH---HHCC------------------
T ss_pred CCCChHH-----HHHHHHHhCCCCCHHHhhccceEec-eeChHHHHHHHHHHHHH---hCCC------------------
Confidence 9555432 333444444101111121 012334 89999998666555543 2211
Q ss_pred CccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 218 MPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 218 ~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.+...+++.+||.|=+..+++|+
T Consensus 389 --------~~Gd~vll~~fG~Glt~~~~ll~ 411 (413)
T 3v7i_A 389 --------KTGSRAVLYAAAPGLTATALEGE 411 (413)
T ss_dssp --------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred --------CCCCEEEEEEECHHHhHhhhheE
Confidence 12356778899988888888875
|
| >2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=77.43 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=35.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCC--cCEEEEeCcCC
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGD--SDVMVAGGTES 39 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~--~d~alvgg~e~ 39 (251)
+++.|..+|++++.||..|..+|++|. .+.+||+|+|.
T Consensus 129 ~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Ei 168 (478)
T 2p8u_A 129 EGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDI 168 (478)
T ss_dssp BCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEE
T ss_pred eEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeee
Confidence 467889999999999999999999999 99999999994
|
| >4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.49 E-value=1.9 Score=36.59 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=56.2
Q ss_pred EEEeeeeecCCCCCC-CCCC-CChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHI-TQPH-IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~-~~~~-~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+... ..+. ...+-..++++++|+++|++++|||.+..- +.+... ...-+.-+...++-.. ..
T Consensus 7 v~Ivg~~rT~~g~~~~~~~~~~~~~L~~~a~~~Al~~agi~~~~Id~v~~g-~~~~~~~~~~~a~~~~~~lGl~~---~~ 82 (395)
T 4e1l_A 7 VVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIG-NVLQTGLGQNVARQIAINAGIPN---SV 82 (395)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CCCCSSTTCCHHHHHHHHTTCCT---TS
T ss_pred EEEEECccCCccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCcchHHHHHHHHcCCCC---Cc
Confidence 456666554333211 1111 223456789999999999999999987663 222211 1111222222222110 12
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
|...+ +..+++++..+..+...++.|.
T Consensus 83 p~~~v-----~~~Css~~~al~~A~~~I~~G~ 109 (395)
T 4e1l_A 83 PSYTV-----NKLCGSGLKSVQLAAQSITSGE 109 (395)
T ss_dssp CEEEE-----CCGGGHHHHHHHHHHHHHHTTS
T ss_pred eEEEc-----cccchHHHHHHHHHHHHHhCCC
Confidence 22222 4567889999999999998775
|
| >4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=90.23 E-value=2 Score=36.57 Aligned_cols=100 Identities=10% Similarity=-0.026 Sum_probs=56.1
Q ss_pred EEEeeeeecCCCCCC-CCCCC-ChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHI-TQPHI-DGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~-~~~~~-~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+... ..++. ..+-..++++++|+++|++++|||.+... +.+.. ..+.-+.-+...++-. . ..
T Consensus 9 v~Ivg~~rT~~~~~~~~~~~~~~~~L~~~A~~~AL~~agl~~~dId~vi~g-~~~~~~~~~~~a~~v~~~lGl~-~--~~ 84 (396)
T 4dd5_A 9 VVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLG-GVLTAGLGQNIARQIALGAGIP-V--EK 84 (396)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CSCCTTSCSCHHHHHHHHTTCC-T--TS
T ss_pred EEEEEcccCCeeecCCCCCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-eecCCCCCchHHHHHHHHcCCC-C--Cc
Confidence 456666544333211 11122 23456789999999999999999987763 22221 1111222222323321 0 12
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
|...+ ...+++++..|..+...++.|.
T Consensus 85 p~~~v-----~~aCss~~~al~~A~~~I~~G~ 111 (396)
T 4dd5_A 85 PAMTI-----NIVCGSGLRSVSMASQLIALGD 111 (396)
T ss_dssp CEEEE-----CCGGGHHHHHHHHHHHHHHHTS
T ss_pred eEEEe-----ccccHHHHHHHHHHHHHHhcCC
Confidence 22222 3457889999999999998775
|
| >2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.19 Score=43.84 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=27.4
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEE
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVA 34 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alv 34 (251)
++.+..+|++++.||..|..+|++|..+.++|
T Consensus 111 a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lv 142 (460)
T 2wya_A 111 GIDTTNACYGGTASLFNAANWMESSSWDGRYA 142 (460)
T ss_dssp CCEEESGGGHHHHHHHHHHHHHTSTTCCSCEE
T ss_pred EechhhhhhhHHHHHHHHHHHHHhccccceEE
Confidence 47789999999999999999999998764333
|
| >3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=88.49 E-value=1.6 Score=36.04 Aligned_cols=78 Identities=9% Similarity=0.015 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.|... +.++.. .+.-+.-+...++-. +.+...+. ..+++|+..|..
T Consensus 59 ~~La~~Aa~~aL~~ag~~~~~Id~vi~~-t~~~~~~~p~~a~~v~~~lGl~----~~~~~~v~-----~~C~s~~~al~~ 128 (323)
T 3il3_A 59 ATMGFEAAKNAIEAAQINPQDIELIIVA-TTSHSHAYPSAACQVQGLLNID----DAISFDLA-----AACTGFVYALSV 128 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGCCEEEEE-CSCCSCSSSCHHHHHHHHTTCS----SCEEEEEC-----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCccHHHHHHHHhCCC----CccEEEEC-----CccHHHHHHHHH
Confidence 3456789999999999999999987663 333311 121222233333321 13333332 357788888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 129 A~~~i~~g~ 137 (323)
T 3il3_A 129 ADQFIRAGK 137 (323)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHCCC
Confidence 888888764
|
| >3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.02 E-value=3 Score=35.37 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=56.7
Q ss_pred EEEeeeeecCCCCCC-CCCC-CChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHI-TQPH-IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~-~~~~-~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+... ..+. ...+-..++++++|+++|++++|||.+..- +.+.... ..-+.-+...++-.. ..
T Consensus 7 v~Ivg~~rT~~~~~~~~~~~~~~~~L~~~A~~~Al~~agl~~~~Id~v~~g-~~~~~~~~~~~a~~i~~~lGl~~---~~ 82 (394)
T 3ss6_A 7 VVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILG-HCIQRTDEANTARTAALAAGFPD---TV 82 (394)
T ss_dssp EEEEEEEECCCEETTSTTTTCCHHHHHHHHHHHHHHHTTCCGGGCCEEEEE-CSSCCGGGCSHHHHHHHHTTCCT---TC
T ss_pred EEEEEcccCCccccCCCCCCCCHHHHHHHHHHHHHHHcCCCHhHCCEEEEE-EccCCCccchHHHHHHHHcCCCC---Cc
Confidence 456666544333211 1111 223556789999999999999999987763 3222211 111122222222110 13
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
|...+ +..++|++..+..+...++.|..
T Consensus 83 p~~~v-----~~aCss~~~al~~A~~~I~~G~~ 110 (394)
T 3ss6_A 83 TGYTI-----QRQCSSGMQAIMSAAMQIQLGVS 110 (394)
T ss_dssp EEEEE-----ECGGGHHHHHHHHHHHHHHHTSC
T ss_pred eEEEe-----cCcchHHHHHHHHHHHHHhCCCC
Confidence 33222 35678899999999999988753
|
| >3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=87.99 E-value=4.5 Score=34.21 Aligned_cols=80 Identities=14% Similarity=-0.044 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHc-CCCCCCccEEEecCCCCcCC--cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHH
Q 040515 112 GKGAILAMTRALKQS-GLQSHQVDYVNAHATSTPLG--DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEA 188 (251)
Q Consensus 112 ~~~~~~a~~~al~~A-gi~~~dId~i~~h~~gt~~~--D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l 188 (251)
.+-..++++++|+++ |++++|||.+... +.+..+ ...-+.-+...++-.. ..|...+ ...++|++..+
T Consensus 28 ~~L~~~a~~~Al~~a~gi~~~~Id~v~~g-~~~~~~~~~~~~a~~~~~~~Gl~~---~~p~~~v-----~~aCss~l~Al 98 (387)
T 3goa_A 28 EDLSAHLMRSLLARNPSLTAATLDDIYWG-CVQQTLEQGFNIARNAALLAEIPH---SVPAVTV-----NRLCGSSMQAL 98 (387)
T ss_dssp HHHHHHHHHHHHHHCTTSCGGGCCEEEEE-CSCCSBTTTTTHHHHHHHHTTCCT---TSCCEEE-----ECGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHcCEEEEE-cccCCcccccHHHHHHHHHcCCCC---CCcEeEe-----cCcchHHHHHH
Confidence 355678999999999 9999999987653 222211 1111222222222110 1222222 45678999999
Q ss_pred HHHHHHHhhCCc
Q 040515 189 IFAVLTIHHGVA 200 (251)
Q Consensus 189 ~~~~~~l~~~~i 200 (251)
..+...++.|..
T Consensus 99 ~~A~~~I~sG~~ 110 (387)
T 3goa_A 99 HDAARMIMTGDA 110 (387)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHhCCCC
Confidence 999999998753
|
| >3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A | Back alignment and structure |
|---|
Probab=87.59 E-value=1.8 Score=35.96 Aligned_cols=79 Identities=10% Similarity=0.000 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.|... +.++ ...+.-+.-+...++-.. ..+...+. ..+++|+..+..
T Consensus 69 ~~La~~Aa~~al~~ag~~~~~Id~vi~~-t~~~~~~~p~~a~~v~~~lGl~~---~~~~~~v~-----~aC~s~~~al~~ 139 (345)
T 3s21_A 69 SDAATQAARKALIDANIGIEKIGLLINT-SVSRDYLEPSTASIVSGNLGVSD---HCMTFDVA-----NACLAFINGMDI 139 (345)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEC-CSCCSCSSSCHHHHHHHHHTCCT---TCEEEECC-----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCChHHHHHHHHhCCCC---CceEEeEC-----CcCHHHHHHHHH
Confidence 3456789999999999999999997663 3332 112222333334343211 13333222 357788888988
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 140 A~~~i~~g~ 148 (345)
T 3s21_A 140 AARMLERGE 148 (345)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHCCC
Confidence 888888764
|
| >4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665} | Back alignment and structure |
|---|
Probab=87.22 E-value=1.5 Score=36.39 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
....+|.+++|+++|++|+|||+|... +.|+. ..+.-+.-+...++-.. .+.-.+ ...+++++..|..+
T Consensus 64 ~la~~Aa~~aL~~ag~~~~dId~li~~-t~t~~~~~P~~a~~v~~~LGl~~----~~a~di-----~~~C~g~~~aL~~A 133 (350)
T 4ewp_A 64 VMAVGAAREALERAGLQGSDLDAVIVS-TVTFPHATPSAAALVAHEIGATP----APAYDV-----SAACAGYCYGVAQA 133 (350)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSEEEEE-CSCCSCSSSCHHHHHHHHTTCTT----SCEEEE-----ECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE-eccCCCCCCchHHHHHHHhCCCC----ceEEEe-----ecchhhHHHHHHHh
Confidence 455789999999999999999987653 33332 22333344444454321 111111 12355666777777
Q ss_pred HHHHhhCC
Q 040515 192 VLTIHHGV 199 (251)
Q Consensus 192 ~~~l~~~~ 199 (251)
...++.+.
T Consensus 134 ~~~i~~g~ 141 (350)
T 4ewp_A 134 DALVRSGT 141 (350)
T ss_dssp HHHHHTTS
T ss_pred hhhhhCCC
Confidence 66676654
|
| >3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=2 Score=35.27 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.+... +.++. ..+.-+.-+...++-. +.+...+ ...+++|+..|..
T Consensus 53 ~~La~~Aa~~aL~~ag~~~~~Id~li~~-t~~~~~~~p~~a~~v~~~lGl~----~~~~~~v-----~~aC~s~~~al~~ 122 (321)
T 3il6_A 53 SDLCHQVAKQLLEKSGKQASEIDFILVA-TVTPDFNMPSVACQVQGAIGAT----EAFAFDI-----SAACSGFVYALSM 122 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEE-CSSCSCSSSCHHHHHHHHTTCT----TCEEEEE-----CCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCcCCCcHHHHHHHHcCCC----CceEEEe-----CcccHHHHHHHHH
Confidence 4456788999999999999999987653 33321 1111222233333321 1232222 2457788888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 123 A~~~i~~g~ 131 (321)
T 3il6_A 123 AEKLVLSGR 131 (321)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHHCCC
Confidence 888888764
|
| >3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* | Back alignment and structure |
|---|
Probab=87.14 E-value=2 Score=36.07 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.|... +.++ ...+.-+.-+...++-. +.+...+ ...+++|+..|..
T Consensus 75 ~~La~~Aa~~aL~~agl~~~dId~vi~~-t~~~~~~~p~~a~~v~~~lGl~----~~~~~~v-----~~aC~s~~~Al~~ 144 (359)
T 3h78_A 75 SALMVPAARQAIEAAGLLPEDIDLLLVN-TLSPDHHDPSQACLIQPLLGLR----HIPVLDI-----RAQASGLLYGLQM 144 (359)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCEEEEE-CSSCSSSBSCHHHHHHHHHTCC----SCCEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHCCEEEEE-eCCCCCCCCcHHHHHHHHcCCC----CCcEEEE-----CCHhHHHHHHHHH
Confidence 4567789999999999999999987763 3332 11121222333333321 1222222 2456778888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 145 A~~~i~sG~ 153 (359)
T 3h78_A 145 ARGQILAGL 153 (359)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHCCC
Confidence 888888764
|
| >4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=86.65 E-value=2.1 Score=35.31 Aligned_cols=79 Identities=19% Similarity=0.111 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.|... +.++. ..+.-+.-+...++-.. ..+...+ ...+++|+..|..
T Consensus 66 ~~la~~Aa~~al~~ag~~~~~Id~vi~~-t~~~~~~~p~~a~~v~~~lgl~~---~~~~~~v-----~~~C~s~~~al~~ 136 (333)
T 4dfe_A 66 SDLAFIASQRAIEAADIDPQSIDLIIVA-TSTPDFVFPSTACLLQNKLGIRN---HGAAFDV-----QAVCSGFAYAVAT 136 (333)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEE-CSSCSSSBSCHHHHHHHHTTCCS---CCEEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCCcHHHHHHHHhCCCC---CCcEEEe-----CcccHHHHHHHHH
Confidence 3456789999999999999999987663 33321 11222233333343211 1333222 3567888889988
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 137 A~~~i~~g~ 145 (333)
T 4dfe_A 137 ADSFIRSGQ 145 (333)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 998888764
|
| >3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.78 E-value=2.3 Score=36.46 Aligned_cols=78 Identities=18% Similarity=0.052 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHH
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~ 193 (251)
...+++++||+++|++++|||.|..- +.+...-+.-..-+...++-...-..+.+ ....+++|+..|..+..
T Consensus 140 La~~Aa~~AL~~agi~~~dId~li~~-t~t~~~~P~~a~~v~~~LGl~~~~~~~~v-------~~~~Cagg~~AL~~A~~ 211 (413)
T 3v7i_A 140 YGERAARGALQIAGLDVADVDCLITS-NSTTPALPGLDVALANRLPLRGDTMLLPA-------TQWACVAGTRSLALAAD 211 (413)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCEEEEE-CCSSCCSSCHHHHHHHHTTCCTTCEEEEE-------SSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHCCEEEEE-ccCCCCcCHHHHHHHHHhCCCCCceEEEe-------eCCccHHHHHHHHHHHH
Confidence 45678899999999999999987653 33332112122223333332110001222 24567788888888888
Q ss_pred HHhhCC
Q 040515 194 TIHHGV 199 (251)
Q Consensus 194 ~l~~~~ 199 (251)
.++.+.
T Consensus 212 ~i~ag~ 217 (413)
T 3v7i_A 212 LVAADP 217 (413)
T ss_dssp HHHHCT
T ss_pred HHhcCC
Confidence 888764
|
| >3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.57 E-value=2.2 Score=36.30 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
+...+++++||+++|++++|||.|... +.++. ..+.-+..+...++-. .+...+ ...+++++..|..+
T Consensus 119 ~La~~Aa~~AL~~agi~~~dId~vi~~-t~t~~~~~p~~a~~v~~~LGl~-----~~~~dv-----~~aC~g~~~aL~~A 187 (392)
T 3led_A 119 EMAVTAAEQAIERWGKPRERIGAVLCA-CSNMQRAYPAMAIEVQNALGLG-----GFAFDM-----NVACSSATFGLKTA 187 (392)
T ss_dssp HHHHHHHHHHHHHHCSCGGGEEEEEEE-SSCCSCSBSCHHHHHHHHTTCC-----SEEEEE-----ECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEE-ecCCCCCccHHHHHHHHHhCCC-----CeEEEE-----CCccHHHHHHHHHH
Confidence 456788999999999999999998753 33321 1222222233333321 222221 35577888888888
Q ss_pred HHHHhhCC
Q 040515 192 VLTIHHGV 199 (251)
Q Consensus 192 ~~~l~~~~ 199 (251)
...++.+.
T Consensus 188 ~~~i~~g~ 195 (392)
T 3led_A 188 ADFVGGGS 195 (392)
T ss_dssp HHHHHTTS
T ss_pred HHHHHCCC
Confidence 88888764
|
| >4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=84.85 E-value=2.3 Score=35.52 Aligned_cols=79 Identities=18% Similarity=0.081 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.|... +.++ ...+.-+.-+...++-.. ..+...+ +..+++|+..|..
T Consensus 67 ~~La~~Aa~~aL~~agi~~~~Id~vi~~-t~~~~~~~p~~a~~v~~~lGl~~---~~~~~~v-----~~aC~s~~~al~~ 137 (354)
T 4efi_A 67 GDLCRKAGEKLLAGLGWQADSIDALIFV-SQTPNYRLPATAFVLQAELDLPA---SCLALDI-----NLGCSGYPQALWL 137 (354)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEE-CSSCSCSSSCHHHHHHHHTTCCT---TSEEEEE-----CCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCCcHHHHHHHHcCcCC---CccEEee-----CcccHHHHHHHHH
Confidence 3456789999999999999999987664 3332 111112223333333211 1333222 2456788888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 138 A~~~i~~g~ 146 (354)
T 4efi_A 138 GMNLIQTGA 146 (354)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHCCC
Confidence 888888764
|
| >3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A | Back alignment and structure |
|---|
Probab=84.67 E-value=2.3 Score=35.70 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++|+|||.|..- +.++ ...+.-+.-+...++-.. ..+...+ ...+++|+..|..
T Consensus 81 ~~La~~Aa~~aL~~ag~~~~~Id~vi~~-t~~~~~~~p~~a~~v~~~lGl~~---~~~~~~v-----~~~C~s~~~Al~~ 151 (365)
T 3gwa_A 81 ADLAYEAARKLFAQGAVGADQVDFVILC-TQAPDYVLPTSACMLQHRLGIPT---HAGALDV-----NLGCSGYVYGLSL 151 (365)
T ss_dssp HHHHHHHHHHHHHTTSCCGGGCCEEEEE-ESSCSCSBSCHHHHHHHHTTCCT---TSEEEEE-----ECSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-eCCCCCCCCcHHHHHHHHcCCCC---CceEEEe-----cccChHHHHHHHH
Confidence 3456789999999999999999987663 2222 111222223333333210 1232222 1346788888888
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 152 A~~~i~~g~ 160 (365)
T 3gwa_A 152 AKGLVETGA 160 (365)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 888888764
|
| >2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.49 E-value=7.2 Score=33.32 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc-HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD-TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D-~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+-..+++++||+++|++++|||.|.. |+.+.... ..-...+...++-. .. .|...+ ...++||+..|..
T Consensus 56 ~~L~~~Aa~~AL~dAgl~~~~id~v~~-g~~~~~~~~~~~a~~~a~~lGl~-~~--~p~~~v-----~~aCss~~~Al~~ 126 (418)
T 2iik_A 56 DELLSAVMTAVLKDVNLRPEQLGDICV-GNVLQPGAGAIMARIAQFLSDIP-ET--VPLSTV-----NRQCSSGLQAVAS 126 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCCEEE-ECSSSBGGGHHHHHHHHHHTTCC-TT--SCEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EecCCccccccHHHHHHHHcCCC-CC--ceEEEe-----CCCCHHHHHHHHH
Confidence 345678899999999999999997665 33332211 11111111222211 01 222222 3457899999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+...++.|..
T Consensus 127 A~~~I~~G~~ 136 (418)
T 2iik_A 127 IAGGIRNGSY 136 (418)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHCCCC
Confidence 9999987753
|
| >2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A* | Back alignment and structure |
|---|
Probab=83.79 E-value=7.3 Score=32.88 Aligned_cols=101 Identities=11% Similarity=0.041 Sum_probs=56.2
Q ss_pred EEEeeeeecCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecC-CCCcCCcHHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHIT--QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA-TSTPLGDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~--~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~-~gt~~~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+.... ......+-...+++++|+++|++++|||.+..-- .++..+.. -+.-+...++-. .. .
T Consensus 10 v~Ivg~~rTp~g~~~g~~~~~~~~~l~~~a~~~Al~dAgl~~~~id~~~~g~~~~~~~~~~-~a~~va~~lgl~-~~--~ 85 (395)
T 2ib8_A 10 VVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQA-PTRQAVLGAGLP-IS--T 85 (395)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSC-HHHHHHHHTTCC-TT--C
T ss_pred eEEEecccccccccCCCcCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCch-HHHHHHHHcCCC-CC--c
Confidence 4677766544332211 1111234567789999999999999999766521 12111111 122222223311 01 2
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCc
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVA 200 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~i 200 (251)
|...+ .+.++||+..|..+...++.|..
T Consensus 86 p~~~v-----~~aCaS~~~Al~~A~~~I~~G~~ 113 (395)
T 2ib8_A 86 PCTTI-----NKVCASGMKAIMMASQSLMCGHQ 113 (395)
T ss_dssp CEEEE-----ECGGGHHHHHHHHHHHHHHTTSC
T ss_pred eEEEe-----cccccHHHHHHHHHHHHHHCCCC
Confidence 22222 34578999999999999998754
|
| >1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1 | Back alignment and structure |
|---|
Probab=82.98 E-value=8.1 Score=32.72 Aligned_cols=80 Identities=18% Similarity=0.122 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCc--HHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD--TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D--~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.+-...++++||+++|++++|||.|.. ++.+.... ..-+.-+...++-.. . .|...+ ...++||+..|.
T Consensus 27 ~~L~~~Aa~~Al~dAgl~~~~id~v~~-g~~~~~~~~~~~~a~~va~~lGl~~-~--~p~~~v-----~~aCas~~~Al~ 97 (401)
T 1ulq_A 27 DDLLAHALSVLVDRSGVPKEEVEDVYA-GCANQAGEDNRNVARMALLLAGFPV-E--VAGCTV-----NRLCGSGLEAVA 97 (401)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEE-ECSCCSSTTTTTHHHHHHHHTTCCT-T--CEEEEE-----ECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EecccCCCCCChHHHHHHHHhCCCC-C--ccEeec-----cccchHHHHHHH
Confidence 345678899999999999999997665 33322111 112222333333210 1 232222 345789999999
Q ss_pred HHHHHHhhCCc
Q 040515 190 FAVLTIHHGVA 200 (251)
Q Consensus 190 ~~~~~l~~~~i 200 (251)
.+...++.|..
T Consensus 98 ~A~~~I~~G~~ 108 (401)
T 1ulq_A 98 QAARAIWAGEG 108 (401)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHCCCC
Confidence 99999998753
|
| >1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A | Back alignment and structure |
|---|
Probab=82.56 E-value=2.2 Score=36.09 Aligned_cols=79 Identities=18% Similarity=-0.020 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
.....+++++|+++|++++|||.|.. ++.++..-+.-+.-+...++-. .+++...+ ....+++|+..|..+.
T Consensus 115 ~la~~Aa~~aL~~agl~~~~Id~vi~-~t~~~~~~p~~a~~v~~~lGl~---~~~~~~~v----~~~aCas~~~Al~~A~ 186 (393)
T 1ted_A 115 PLAVDVSKRALAGLPYRAAEIGLLVL-ATSTGFIAPGVDVAIVKELGLS---PSISRVVV----NFMGCAAAMNALGTAT 186 (393)
T ss_dssp HHHHHHHHHHHTTCCCCGGGEEEEEE-EESSCCCSSCHHHHHHHHHTCC---TTCEEEEE----ESCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE-EEeCCCccChHHHHHHHHcCcC---CCcceeEe----ccchhHHHHHHHHHHH
Confidence 34567889999999999999998764 2333221111122233333321 11221111 1346788899999999
Q ss_pred HHHhhCC
Q 040515 193 LTIHHGV 199 (251)
Q Consensus 193 ~~l~~~~ 199 (251)
..++.|.
T Consensus 187 ~~i~~G~ 193 (393)
T 1ted_A 187 NYVRAHP 193 (393)
T ss_dssp HHHHHST
T ss_pred HHHHcCC
Confidence 9998875
|
| >1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* | Back alignment and structure |
|---|
Probab=82.22 E-value=4.5 Score=32.87 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.|.. ++.++.. .+.-+.-+...++-.. .|...+ ...+++|+..|..
T Consensus 52 ~~l~~~a~~~al~~ag~~~~~id~vi~-g~~~~~~~~~~~a~~v~~~lgl~~----~~~~~v-----~~aCas~~~al~~ 121 (317)
T 1hnj_A 52 STMGFEAATRAIEMAGIEKDQIGLIVV-ATTSATHAFPSAACQIQSMLGIKG----CPAFDV-----AAACAGFTYALSV 121 (317)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEE-ECSCCSCSSSCHHHHHHHHHTCCS----SCEEEE-----CCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EcCCCCCCCCcHHHHHHHHhCCCC----CeEEee-----CcccHHHHHHHHH
Confidence 445678899999999999999998654 2332211 1111222333333211 122222 3457888999999
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 122 A~~~i~~g~ 130 (317)
T 1hnj_A 122 ADQYVKSGA 130 (317)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHCCC
Confidence 999998875
|
| >1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A | Back alignment and structure |
|---|
Probab=81.55 E-value=4.8 Score=32.96 Aligned_cols=79 Identities=22% Similarity=0.095 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+...++++++|+++|++++|||.|.. ++.+.. ..+.-..-+...++-. . .+...+ ...+++++..|..
T Consensus 62 ~~la~~A~~~al~~ag~~~~~id~vi~-~t~~~~~~~~~~a~~v~~~lgl~--~--~~~~~v-----~~aC~s~~~al~~ 131 (335)
T 1u6e_A 62 ASMATEACRRALSNAGLSAADIDGVIV-TTNTHFLQTPPAAPMVAASLGAK--G--ILGFDL-----SAGAAGFGYALGA 131 (335)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEE-ECSCCCCSSSCHHHHHHHHHTCT--T--SEEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EcCCCCCCCChHHHHHHHHhCCC--C--CcEeee-----ccccHHHHHHHHH
Confidence 445678899999999999999998764 333321 1111122233333321 1 233222 2347888899999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+...++.|..
T Consensus 132 A~~~i~~g~~ 141 (335)
T 1u6e_A 132 AADMIRGGGA 141 (335)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHcCCC
Confidence 9999988753
|
| >2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.41 E-value=5.1 Score=32.35 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.|... +.+... -+.-..-+...++-.. .|...+ ...+++|+..+..
T Consensus 51 ~~l~~~a~~~al~~ag~~~~~id~v~~~-~~~~~~~~~~~a~~v~~~lgl~~----~~~~~v-----~~~C~s~~~al~~ 120 (309)
T 2ebd_A 51 TYMATQAAKEALREANLSPEELDLIILA-TLTPQKRFPSTACLVQAQLKAKG----VYAFDI-----SAACSGFIYALDI 120 (309)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCSEEEEE-CSSCSSSSSCHHHHHHHHHTCTT----CEEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-cCCCCCCCCcHHHHHHHHhCCCC----ceEEec-----CccchHHHHHHHH
Confidence 4556788999999999999999876653 322211 1111222333333211 233222 2457888999999
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 121 A~~~i~~g~ 129 (309)
T 2ebd_A 121 ADSFIKSGK 129 (309)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHCCC
Confidence 999998775
|
| >1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A | Back alignment and structure |
|---|
Probab=81.35 E-value=4.7 Score=32.68 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.|... +.+.. ..+.-..-+...++-.. .|... + ...+++|+..|..
T Consensus 52 ~~l~~~a~~~al~~ag~~~~~id~vi~~-~~~~~~~~~~~a~~v~~~lgl~~----~~~~~----v-~~aCas~~~al~~ 121 (313)
T 1zow_A 52 SDLAYEASVKAIADAGIQPEDIDMIIVA-TATGDMPFPTVANMLQERLGTGK----VASMD----Q-LAACSGFMYSMIT 121 (313)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEE-CSSCSCSSSCHHHHHHHHHTCCS----CCEEE----E-ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEE-cCCCCCCCCcHHHHHHHHhCCCC----CcEEE----E-CCcCHHHHHHHHH
Confidence 3456788999999999999999976542 32221 11111222333333211 12222 2 3457888999999
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 122 A~~~i~~g~ 130 (313)
T 1zow_A 122 AKQYVQSGD 130 (313)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHCCC
Confidence 999998875
|
| >1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=81.18 E-value=5.3 Score=32.89 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.+....+++++|+++|++++|||.|.. ++.+... .+.-+.-+...++-.. .|...+ ...+++|+..|..
T Consensus 61 ~~la~~Aa~~al~~ag~~~~~id~vi~-gt~~~~~~~p~~a~~v~~~lgl~~----~~~~~v-----~~aCas~~~Al~~ 130 (339)
T 1mzj_A 61 QVMGVAASRRALEHAGVDPAEIDLVVV-STMTNFVHTPPLSVAIAHELGADN----AGGFDL-----SAACAGFCHALSI 130 (339)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEE-ECSCCCCCSSCHHHHHHHHHTCTT----CEEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEE-EecCCCCCCChHHHHHHHHhCCCC----ccEEEc-----cccchHHHHHHHH
Confidence 445678899999999999999997653 2332211 1111222333333211 233222 2357888999999
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.|.
T Consensus 131 A~~~i~~G~ 139 (339)
T 1mzj_A 131 AADAVESGG 139 (339)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHCCC
Confidence 999998875
|
| >2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=80.71 E-value=3.3 Score=34.65 Aligned_cols=79 Identities=18% Similarity=-0.010 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
+...++++++|+++|++++|||.|.. ++.+....+.-+.-+...++-. ..++...+. ...+++|+..|..+.
T Consensus 97 ~la~~Aa~~al~~ag~~~~~id~vi~-~t~~~~~~p~~a~~v~~~lGl~---~~~~~~~v~----~~aCss~~~al~~A~ 168 (374)
T 2h84_A 97 DLAQQACLRALKDWGGDKGDITHIVS-VTSTGIIIPDVNFKLIDLLGLN---KDVERVSLN----LMGCLAGLSSLRTAA 168 (374)
T ss_dssp HHHHHHHHHHHHHHCSCGGGCCEEEE-EESSCCCSSCHHHHHHHHHTCC---TTCEEEEEE----SCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEE-EeeCCCCCCcHHHHHHHHcCcC---CCCceEEec----CCcCHHHHHHHHHHH
Confidence 34567889999999999999998764 3333221111122233333321 112222221 145778888999999
Q ss_pred HHHhhCC
Q 040515 193 LTIHHGV 199 (251)
Q Consensus 193 ~~l~~~~ 199 (251)
..++.|.
T Consensus 169 ~~i~~g~ 175 (374)
T 2h84_A 169 SLAKASP 175 (374)
T ss_dssp HHHTTCT
T ss_pred HHHHcCC
Confidence 9998775
|
| >1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 | Back alignment and structure |
|---|
Probab=80.49 E-value=4.7 Score=33.91 Aligned_cols=79 Identities=14% Similarity=-0.020 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
.....+++++|+++|++++|||.|.. ++.++..-+.-+.-+...++-. ..++...+ ....+++|+..|..+.
T Consensus 86 ~la~~Aa~~aL~~agl~~~~id~vi~-~t~~~~~~p~~a~~v~~~lGl~---~~~~~~~v----~~~aCss~~~Al~~A~ 157 (382)
T 1u0m_A 86 SRVPAVIQRALDDAELLATDIDVIIY-VSCTGFMMPSLTAWLINEMGFD---STTRQIPI----AQLGCAAGGAAINRAH 157 (382)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCSEEEE-ECSSSCCSSCHHHHHHHHTTCC---TTCEEEEE----CSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEE-EecCCCCCCcHHHHHHHHhCCC---CCcceEEc----cCCcCHHHHHHHHHHH
Confidence 34567889999999999999998764 3333321121122233333321 11222222 1346788899999999
Q ss_pred HHHhhCC
Q 040515 193 LTIHHGV 199 (251)
Q Consensus 193 ~~l~~~~ 199 (251)
..++.+.
T Consensus 158 ~~i~~g~ 164 (382)
T 1u0m_A 158 DFCTAYP 164 (382)
T ss_dssp HHHHHST
T ss_pred HHHHcCC
Confidence 9998875
|
| >3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* | Back alignment and structure |
|---|
Probab=80.29 E-value=5.7 Score=33.17 Aligned_cols=80 Identities=13% Similarity=-0.044 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCC--CcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATS--TPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~g--t~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
.....++++++|+++|++|+|||.|..--+. ++..-.. +.-+...++-. ..+...+ ...+++|+..|.
T Consensus 55 ~~La~~Aa~~aL~~ag~~~~dId~vi~~t~~~~~~d~~~~-a~~v~~~lG~~----~~~~~~v-----~~aC~~~~~al~ 124 (357)
T 3s3l_A 55 PRMAARAARAALGRGDVDPADVSLVLHSSLWFQGIDLWPA-ASYVAHEAVGR----HVPAFGL-----AQRCNGGMGAIE 124 (357)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEEECSSCCSSSSSCH-HHHHHHHHTCS----SSCEEEE-----ECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEeccCCCcccccH-HHHHHHHhCCC----CCcEEEE-----cCccHHHHHHHH
Confidence 3456789999999999999999998764321 2211111 22233333321 1222222 245677888888
Q ss_pred HHHHHHhhCCcc
Q 040515 190 FAVLTIHHGVAP 201 (251)
Q Consensus 190 ~~~~~l~~~~ip 201 (251)
.+...++.+...
T Consensus 125 ~A~~~i~sg~~~ 136 (357)
T 3s3l_A 125 LAGAYLGSGIGA 136 (357)
T ss_dssp HHHHHHHTTSSS
T ss_pred HHHHHHHcCCCC
Confidence 888888877543
|
| >1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A | Back alignment and structure |
|---|
Probab=80.06 E-value=12 Score=31.60 Aligned_cols=100 Identities=12% Similarity=-0.010 Sum_probs=54.7
Q ss_pred EEEeeeeecCCCCCCC--CCCCChHHHHHHHHHHHHHcCCCCCCccEEEecC-CCCcCCcHHHHHHHHHHhhccCCCCce
Q 040515 91 AEVRGYGMSGDAHHIT--QPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHA-TSTPLGDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 91 a~i~g~~~~~~~~~~~--~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~-~gt~~~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
++|.|.+...-+.... ......+-...+++++|+++|++++|||.+.... .+...+.. -..-+...++-. .. .
T Consensus 8 v~Ivg~~~tp~g~~~g~~~~~~~~~L~~~a~~~Al~dAGl~~~~id~v~~g~~~~~~~~~~-~a~~ia~~lgl~-~~--~ 83 (397)
T 1wl4_A 8 VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQN-PVRQASVGAGIP-YS--V 83 (397)
T ss_dssp EEEEEEEECCCEETTSTTTTSCHHHHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSC-HHHHHHHHTTCC-TT--S
T ss_pred EEEEEcccCCceeCCCccCCCCHHHHHHHHHHHHHHHcCCCHHHCCEEEEEecCCCCCCCH-HHHHHHHHcCCC-CC--c
Confidence 4566666543322111 0111234567889999999999999998766531 12111111 112222223210 01 2
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCC
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGV 199 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ 199 (251)
|...+ .+.++||+..|..+...++.|.
T Consensus 84 p~~~v-----~~aCaSg~~Ai~~A~~~I~~G~ 110 (397)
T 1wl4_A 84 PAWSC-----QMICGSGLKAVCLAVQSIGIGD 110 (397)
T ss_dssp CEEEE-----CCGGGHHHHHHHHHHHHHHTTS
T ss_pred cEEEe-----cCcChhHHHHHHHHHHHHHCCC
Confidence 22222 2457899999999999999775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 251 | ||||
| d2ix4a2 | 161 | c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II | 1e-50 | |
| d2gfva2 | 161 | c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II | 5e-41 | |
| d1e5ma2 | 161 | c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II | 1e-38 | |
| d1j3na2 | 159 | c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II | 4e-38 | |
| d1ox0a2 | 158 | c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II | 2e-35 | |
| d2vbaa2 | 151 | c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I | 1e-34 | |
| d1tqya2 | 205 | c.95.1.1 (A:219-423) Actinorhodin polyketide putat | 2e-34 | |
| d1tqyb2 | 194 | c.95.1.1 (B:210-403) Actinorhodin polyketide putat | 6e-23 | |
| d1j3na1 | 249 | c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II { | 4e-20 | |
| d2ix4a1 | 270 | c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II | 7e-19 | |
| d2gfva1 | 250 | c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II { | 4e-15 | |
| d1e5ma1 | 250 | c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II { | 3e-14 | |
| d2vbaa1 | 253 | c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {E | 5e-14 | |
| d1ox0a1 | 256 | c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II | 3e-12 | |
| d1tqya1 | 216 | c.95.1.1 (A:3-218) Actinorhodin polyketide putativ | 7e-11 | |
| d1tqyb1 | 208 | c.95.1.1 (B:2-209) Actinorhodin polyketide putativ | 8e-11 |
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 161 bits (407), Expect = 1e-50
Identities = 124/160 (77%), Positives = 140/160 (87%)
Query: 90 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 149
YAE+ GYGMSGDAHHITQP DGKGA+LAMTRAL+QSGL +Q+DYVNAHATSTP+GD V
Sbjct: 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAV 60
Query: 150 EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP 209
EA AI+TVFS+HATSG+LAFSSTKGA GHLLGAAGAVEAIF++L IHHGVAP+TLN+ P
Sbjct: 61 EARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNP 120
Query: 210 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249
DPIF+ FMPLT SK M + A+SNSFGFGGTNASLLF
Sbjct: 121 DPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFAS 160
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 136 bits (343), Expect = 5e-41
Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 2/162 (1%)
Query: 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147
KIYAE+ G+GMS DA+H+T P +G GA LAM AL+ +G+++ Q+ YVNAH TSTP GD
Sbjct: 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGD 60
Query: 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLA 207
EA A++T+F + A+ + SSTK GHLLGAAGAVE+I+++L + P T+NL
Sbjct: 61 KAEAQAVKTIFGEAASRVLV--SSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLD 118
Query: 208 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249
PD + +F+P A + + L NSFGFGGTN SL+F K
Sbjct: 119 NPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIFKK 160
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 130 bits (327), Expect = 1e-38
Identities = 76/162 (46%), Positives = 101/162 (62%), Gaps = 3/162 (1%)
Query: 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147
KIY E+ GY M+ DA+HIT P DG+GA A+ ALK SGL+ V Y+NAH TSTP D
Sbjct: 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPAND 60
Query: 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLA 207
E AI+ +HA ++A SSTK GHLLG +G +EA+ V+ I P T+NL
Sbjct: 61 VTETRAIKQALGNHAY--NIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLE 118
Query: 208 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249
PDP + +++P + + + + ALSNSFGFGG N +L F K
Sbjct: 119 NPDPECDLDYVPGQS-RALIVDVALSNSFGFGGHNVTLAFKK 159
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 159 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 128 bits (323), Expect = 4e-38
Identities = 92/162 (56%), Positives = 112/162 (69%), Gaps = 4/162 (2%)
Query: 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGD 147
+IYAE+ G+G S DAHHIT+PH +GKGA LAM RALK +G+ QV Y+NAH TSTP+GD
Sbjct: 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGD 60
Query: 148 TVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLA 207
E AI+ VF DHA L SSTK IGHLLGAAGAVEAI V ++HGV P T+NL
Sbjct: 61 RAEVLAIKRVFGDHAK--RLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLE 118
Query: 208 KPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249
PDP + +F+P ++ + ALSNSF FGG NA L F +
Sbjct: 119 DPDPELDLDFVPEP--REAKVDYALSNSFAFGGHNAVLAFKR 158
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 121 bits (305), Expect = 2e-35
Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 89 IYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDT 148
I AEV GYG + DA+H+T PH +G+GAI A+ AL+++ + QV YVNAH TSTP +
Sbjct: 2 ILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEK 61
Query: 149 VEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAK 208
E+ AI V + SSTK GHLLGAAGAVEAI + + H P+T ++
Sbjct: 62 GESGAIVAVLGKE-----VPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSE 116
Query: 209 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249
N + + I A+SN+FGFGG NA L F +
Sbjct: 117 VSDYIEANVVYGQG-LEKEIPYAISNTFGFGGHNAVLAFKR 156
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 151 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 119 bits (300), Expect = 1e-34
Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 90 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTV 149
YAE+ GYG + D + P G+GA+ M A+ +DY+N+H TSTP+GD
Sbjct: 1 YAEIVGYGATSDGADMVAPS--GEGAVRCMKMAMHG---VDTPIDYLNSHGTSTPVGDVK 55
Query: 150 EATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP 209
E AIR VF D + A S+TK GH LGAAG EAI+++L + HG ++N+ +
Sbjct: 56 ELAAIREVFGDKS----PAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEEL 111
Query: 210 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249
D + T + D ++ +SNSFGFGGTNA+L+ K
Sbjct: 112 DEQAAGLNIV-TETTDRELTTVMSNSFGFGGTNATLVMRK 150
|
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 120 bits (302), Expect = 2e-34
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 15/200 (7%)
Query: 62 TPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPH 109
P+ ASRPFD RDGF + + A RGA+I+AE+ GY +A+H+T
Sbjct: 2 DPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLK 61
Query: 110 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169
DG+ + AL +S + +DY+NAH + T D E A + +HA
Sbjct: 62 ADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHA--RRTPV 119
Query: 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 229
SS K +GH LGA G++E VL + HGV P T NL DP + +++PL A ++ +
Sbjct: 120 SSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSDPECDLDYVPLEA-RERKLR 178
Query: 230 AALSNSFGFGGTNASLLFTK 249
+ L+ GFGG ++++
Sbjct: 179 SVLTVGSGFGGFQSAMVLRD 198
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 90.4 bits (223), Expect = 6e-23
Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 21/200 (10%)
Query: 63 PQEASRPFDCGRDGF------------ELEHAKKRGAK-IYAEVRGYGMSGDAHHITQPH 109
P A PFD G+ + A+ RG Y E+ G + D
Sbjct: 2 PDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAP---GS 58
Query: 110 IDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169
G A+ AL +G VD V A P D EA AI VF
Sbjct: 59 GRPAGLERAIRLALNDAGTGPEDVDVVFADGAGVPELDAAEARAIGRVFGREGVP----V 114
Query: 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPIS 229
+ K G L G ++ + A++++ GV T + + + + +
Sbjct: 115 TVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTSVPREYGIDLVL-GEPRSTAPR 173
Query: 230 AALSNSFGFGGTNASLLFTK 249
AL + G G N++ + +
Sbjct: 174 TALVLARGRWGFNSAAVLRR 193
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Score = 84.0 bits (207), Expect = 4e-20
Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 13/99 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ VTACATGA ++G A RMIQ G++D+++AGGTE++I +++ F RAL+T+ N
Sbjct: 152 GPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-N 210
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGA 87
P++ASRPF RDGF EHAKKRGA
Sbjct: 211 EEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGA 249
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} Length = 270 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Score = 81.2 bits (199), Expect = 7e-19
Identities = 77/101 (76%), Positives = 84/101 (83%), Gaps = 12/101 (11%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPNHAAVTACATGAHSIGDA RMIQFGD+DVMVAGGTESSIDALS+AGF +SRAL+TK+N
Sbjct: 170 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFN 229
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGAKI 89
+PQEASRPFDC RDGF E EHAK+RGAKI
Sbjct: 230 SSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKI 270
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Score = 70.2 bits (171), Expect = 4e-15
Identities = 50/99 (50%), Positives = 63/99 (63%), Gaps = 13/99 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GP+ + TA +G H+IG AAR+I +GD+DVMVAGG E + L + GF +RAL+T+ N
Sbjct: 153 GPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-N 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGA 87
PQ ASRP+D RDGF E EHAKKRGA
Sbjct: 212 DNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGA 250
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Score = 68.0 bits (165), Expect = 3e-14
Identities = 49/99 (49%), Positives = 61/99 (61%), Gaps = 13/99 (13%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
GPN+ VTACA G+++IGDA R++Q G + M+ GGTE++I LS AGF +RAL+ N
Sbjct: 153 GPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSF-RN 211
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGA 87
P ASRPFD RDGF ELE A RGA
Sbjct: 212 DDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGA 250
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Score = 67.3 bits (163), Expect = 5e-14
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 13/100 (13%)
Query: 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNG 61
N++ +ACAT AH IG+A IQ G D++ AGG E + F AL+TKYN
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYND 213
Query: 62 TPQEASRPFDCGRDGF------------ELEHAKKRGAKI 89
TP++ASR +D RDGF ELEHA RGA I
Sbjct: 214 TPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHI 253
|
| >d1ox0a1 c.95.1.1 (A:-5-251) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Score = 62.2 bits (150), Expect = 3e-12
Identities = 44/99 (44%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYN 60
G + TAC++ +IGDA R I+FG DVM+ GGTE+SI ++AGF AL+T
Sbjct: 160 GVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALST--T 217
Query: 61 GTPQEASRPFDCGRDGF------------ELEHAKKRGA 87
P AS PFD R+GF LEHA+KRGA
Sbjct: 218 EDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGA 256
|
| >d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Score = 58.1 bits (139), Expect = 7e-11
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 7 VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTK 58
T C +G S+G+A R I+ G +DVM AG ++ I + +A F RA T +
Sbjct: 164 STGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPITPIVVACFDAIRATTAR 215
|
| >d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Score = 57.8 bits (138), Expect = 8e-11
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTT 57
P+ A V A G ++G A R I+ G + ++V+GG +S++D S ++T
Sbjct: 152 PSSALVAEQAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASGRIST 206
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 251 | |||
| d1tqya2 | 205 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1tqyb2 | 194 | Actinorhodin polyketide putative beta-ketoacyl syn | 100.0 | |
| d1e5ma2 | 161 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 100.0 | |
| d1ox0a2 | 158 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 100.0 | |
| d2ix4a2 | 161 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 100.0 | |
| d2gfva2 | 161 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 100.0 | |
| d1j3na2 | 159 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 100.0 | |
| d2vbaa2 | 151 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 100.0 | |
| d2ix4a1 | 270 | Beta-ketoacyl-ACP synthase II {Thale cress (Arabid | 99.74 | |
| d2vbaa1 | 253 | Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta | 99.71 | |
| d1e5ma1 | 250 | Beta-ketoacyl-ACP synthase II {Synechocystis sp. [ | 99.68 | |
| d2gfva1 | 250 | Beta-ketoacyl-ACP synthase II {Escherichia coli [T | 99.68 | |
| d1j3na1 | 249 | Beta-ketoacyl-ACP synthase II {Thermus thermophilu | 99.68 | |
| d1ox0a1 | 256 | Beta-ketoacyl-ACP synthase II {Streptococcus pneum | 99.66 | |
| d1ulqa2 | 125 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 99.64 | |
| d1afwa2 | 124 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 99.62 | |
| d1m3ka2 | 124 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 99.61 | |
| d1wdkc2 | 128 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 99.61 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 98.46 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 98.42 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 98.42 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 98.41 | |
| d1afwa1 | 269 | Thiolase {Baker's yeast (Saccharomyces cerevisiae) | 98.39 | |
| d1u6ea2 | 148 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 97.82 | |
| d1ub7a2 | 149 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 97.59 | |
| d1hnja2 | 143 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 97.54 | |
| d1mzja2 | 153 | Priming beta-ketosynthase from the r1128 polyketid | 97.23 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 96.87 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 96.74 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 96.59 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 96.46 | |
| d1u0ma2 | 148 | Putative polyketide synthase SCO1206 {Streptomyces | 96.4 | |
| d1xpma1 | 166 | 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap | 96.0 | |
| d1ee0a2 | 160 | Pyrone synthase (PyS, chalcone synthase 2) {Gerber | 95.75 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 95.74 | |
| d1bi5a2 | 154 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 95.6 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 95.24 | |
| d1u0ua2 | 156 | Dihydropinosylvin synthase {Scots pine (Pinus sylv | 95.24 | |
| d1u0ma1 | 200 | Putative polyketide synthase SCO1206 {Streptomyces | 91.83 | |
| d1ub7a1 | 172 | Ketoacyl-ACP synthase III (FabH) {Thermus thermoph | 90.82 | |
| d1u6ea1 | 184 | Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu | 89.64 | |
| d1mzja1 | 181 | Priming beta-ketosynthase from the r1128 polyketid | 89.21 | |
| d1hnja1 | 174 | Ketoacyl-ACP synthase III (FabH) {Escherichia coli | 87.89 | |
| d1m3ka1 | 268 | Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3 | 86.41 | |
| d1teda_ | 372 | Polyketide synthase PKS18 {Mycobacterium tuberculo | 85.43 | |
| d1ulqa1 | 273 | Beta-ketoadipyl CoA thiolase {Thermus thermophilus | 84.79 | |
| d1bi5a1 | 235 | Chalcone synthase {Alfalfa (Medicago sativa) [TaxI | 82.62 | |
| d1wdkc1 | 262 | Fatty oxidation complex beta subunit (3-ketoacyl-C | 81.56 |
| >d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2e-46 Score=295.19 Aligned_cols=187 Identities=35% Similarity=0.611 Sum_probs=174.1
Q ss_pred CCCCcccccccCCCcc------------chhhhhhcCCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCC
Q 040515 62 TPQEASRPFDCGRDGF------------ELEHAKKRGAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQ 129 (251)
Q Consensus 62 ~~~~~~~~f~~~~~g~------------~~~~A~~~g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~ 129 (251)
+|++.|||||..++|| ++++|+++|+++|++|.|+++++|+.+.+.+.++...+.++++++|++++++
T Consensus 2 ~P~~~~rpFD~~adG~v~gEGa~~~vL~~~~~A~~~g~~i~a~i~g~~~~~dg~~~~~~~~~~~~~~~~~~~al~~a~i~ 81 (205)
T d1tqya2 2 DPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTD 81 (205)
T ss_dssp CGGGCCCTTBTTCCCBCEECEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSCSSCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCccCCCCCEeeEeeEEEEEEeEHHHHHHCCCceEEEEEeeEccccccccCcccccccccchhhhhHHhhhcCC
Confidence 5889999999999999 6788999999999999999999999988888888889999999999999999
Q ss_pred CCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCC
Q 040515 130 SHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKP 209 (251)
Q Consensus 130 ~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~ 209 (251)
|+||+|||+|||||+.+|.+|..++.++|+.... +++|+++|+++||+++|+|++++++++++|++++|||++|++.+
T Consensus 82 ~~~i~~ie~hgtGt~~~D~~E~~ai~~~~~~~~~--~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~~ 159 (205)
T d1tqya2 82 ATDIDYINAHGSGTRQNDRHETAAYKRALGEHAR--RTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTS 159 (205)
T ss_dssp GGGCCEEECCCCCCHHHHHHHHHHHHHHTGGGGG--GSCEECTHHHHCBCTTTHHHHHHHHHHHHHHHCEECCBTTCCSB
T ss_pred ccceeeeeccccccccCchhHHHHHHHhhccccC--CceeeeecccccccccccchhHHHHHHHHHhCCeEcccCCCCCC
Confidence 9999999999999999999999999999986443 48999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeecC
Q 040515 210 DPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
+|+++++.++ ...+..+.+++++|+|||||+|+|+||++++
T Consensus 160 ~p~~~~~~v~-~~~~~~~~~~a~~~s~GfGG~na~~vl~~~~ 200 (205)
T d1tqya2 160 DPECDLDYVP-LEARERKLRSVLTVGSGFGGFQSAMVLRDAE 200 (205)
T ss_dssp BTTBCSCCCB-SSCEECCCSEEEEEEEETTTEEEEEEEECHH
T ss_pred CCCCCcccCC-CCCcCCCCCEEEEeCCCCCceeEEEEEeeCC
Confidence 9999998888 4455567899999999999999999999864
|
| >d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=8.4e-45 Score=283.14 Aligned_cols=181 Identities=24% Similarity=0.337 Sum_probs=163.2
Q ss_pred CCCCcccccccCCCcc------------chhhhhhcCC-eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCC
Q 040515 62 TPQEASRPFDCGRDGF------------ELEHAKKRGA-KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGL 128 (251)
Q Consensus 62 ~~~~~~~~f~~~~~g~------------~~~~A~~~g~-~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi 128 (251)
+|+..|+|||.+++|| ++++|+++|+ ++|++|.|++.++|+.+.. +.+ .+++++|+++|+++++
T Consensus 1 ~p~~~~rPFD~~a~G~~~gEGa~~~vLe~~~~A~~rg~~~i~a~i~g~~~~~d~~~~~-~~~--~g~~~~i~~aL~~a~i 77 (194)
T d1tqyb2 1 DPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGS-GRP--AGLERAIRLALNDAGT 77 (194)
T ss_dssp CGGGSCCTTSTTCCCBCBBCEEEEEEEEEHHHHHHHTCCCCSEEEEEEEEEECCCTTC-CCC--CSHHHHHHHHHHHHTC
T ss_pred CCCCCcCcccCCCCCEeeEeeEEEEEEeEHHHHHhcCCceeeeeeecccccccccccc-cch--hhhhhhhhhhcccccc
Confidence 3778999999999999 6788999997 6999999999999986543 222 3468899999999999
Q ss_pred CCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCC
Q 040515 129 QSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAK 208 (251)
Q Consensus 129 ~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~ 208 (251)
+|+||+|||+|||||+.+|.+|..+|.++|+.. .+||+++|+++||+++|+|++++++++++|++++|||++|+++
T Consensus 78 ~~~di~~v~ahgtGt~~~D~~E~~al~~~f~~~----~~~v~s~K~~~GH~~~AsG~~~li~~~~~l~~g~ipp~~~~~~ 153 (194)
T d1tqyb2 78 GPEDVDVVFADGAGVPELDAAEARAIGRVFGRE----GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAGVTS 153 (194)
T ss_dssp CGGGCCEEECCCCCSHHHHHHHHHHHHHHHCTT----CSEEECGGGGTCBCGGGHHHHHHHHHHHHHHHTSBCCBCSCCC
T ss_pred cccceeeeeccccCcccccHHHhhhhhhhhhcc----ccccccccccccccccccccceehhhhhhhhhceeccccCCCC
Confidence 999999999999999999999999999999753 3899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 209 PDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
++|++++++++ .+++....+++++|+|||||+|+|+||+||
T Consensus 154 ~~~~~~~~~v~-~~~~~~~~~~a~v~s~GfgG~na~~vl~~~ 194 (194)
T d1tqyb2 154 VPREYGIDLVL-GEPRSTAPRTALVLARGRWGFNSAAVLRRF 194 (194)
T ss_dssp CCGGGCCEECB-SSCBCCCCSEEEEEEEETTTEEEEEEEEEC
T ss_pred CCcccCccccC-CCCccCCCCEEEEECcCCCceeEEEEEeeC
Confidence 99998888776 455667789999999999999999999998
|
| >d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=4e-44 Score=271.29 Aligned_cols=161 Identities=48% Similarity=0.774 Sum_probs=151.2
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCce
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
+||++|+|+++++|+.+.+.+.|++.++.+++++||++|+++|+||||||+|||||+.+|.+|..+++++|+.... ++
T Consensus 1 rIya~i~G~~~~~Dg~~~~~~~p~g~~~~~~i~~Al~~a~i~~~~i~~v~~HgtGT~~~D~~E~~al~~vf~~~~~--~~ 78 (161)
T d1e5ma2 1 KIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAIKQALGNHAY--NI 78 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGGG--GS
T ss_pred CEEEEEeeEEEeCCCCCCCCCCcCHHHHHHHHHHHHHHcCCChhhcceEEEeccCCcccchHHhhhhhhccccCCC--cc
Confidence 5899999999999999999899999999999999999999999999999999999999999999999999986543 48
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEe
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl 247 (251)
+|+++|+++||+++|||++++++++++|++++|||++|+++|+|.++...++ .+.+....+++++|+|||||+|+|+||
T Consensus 79 ~v~s~K~~~GH~~~AsG~~~l~~~l~~~~~g~ipp~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~nsfGfGG~Na~lvl 157 (161)
T d1e5ma2 79 AVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLDYVP-GQSRALIVDVALSNSFGFGGHNVTLAF 157 (161)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBTTCSSBCTTCCSCCCB-SSCEECCCSEEEEEEEETTTEEEEEEE
T ss_pred eEEecccccccccccchhhHHHHhHHhcccCeeCCccCCCCCCCCCCcccCc-CcccCCCCCEEEEeCcCcCcEeEEEEE
Confidence 9999999999999999999999999999999999999999999999988777 445566789999999999999999999
Q ss_pred eecC
Q 040515 248 TKCQ 251 (251)
Q Consensus 248 ~~~~ 251 (251)
+||+
T Consensus 158 ~~y~ 161 (161)
T d1e5ma2 158 KKYQ 161 (161)
T ss_dssp ECCC
T ss_pred eeeC
Confidence 9996
|
| >d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=8e-44 Score=268.61 Aligned_cols=158 Identities=44% Similarity=0.649 Sum_probs=149.8
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCce
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
+||++|+|+++++|+++.+.|+|++.++.++|+++|++++++|+||||||+|||||+.+|.+|..+++++|++ ++
T Consensus 1 tIyaei~G~~~~~Dg~~~~~p~p~g~~~~~~~~~al~~a~l~p~~i~~v~aHgtgT~~~D~~E~~ai~~~fg~-----~~ 75 (158)
T d1ox0a2 1 TILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGK-----EV 75 (158)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCCEECCCCSCHHHHHHHHHHHHHHHCS-----SS
T ss_pred CEEEEEEEEEEcCCCCCCcCCCCCHHHHHHHHHHhhccccccceeeeEEeeeccccccchhHHHHHHHHhcCC-----cc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999975 38
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEe
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl 247 (251)
||++.|+++||+++|||++++++++++|++++|||++|+++++|.++++.++ .+.+..+.+++++|+|||||+|+|+||
T Consensus 76 ~v~s~Ks~iGH~~~asG~~~l~~~l~~l~~g~iPp~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~nsfGfGG~Na~lvl 154 (158)
T d1ox0a2 76 PVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVY-GQGLEKEIPYAISNTFGFGGHNAVLAF 154 (158)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCBSSCCSBCTTCCSEECB-SSCEECCCSEEEEEEEETTTEEEEEEE
T ss_pred cCcCcccccccchhhhhhhhhcccccccccceeccccCCCCCCcccCccccc-CccccCCCCEEEEeCcCCCcEeEEEEE
Confidence 9999999999999999999999999999999999999999999999988877 455566789999999999999999999
Q ss_pred eecC
Q 040515 248 TKCQ 251 (251)
Q Consensus 248 ~~~~ 251 (251)
+|||
T Consensus 155 ~~~~ 158 (158)
T d1ox0a2 155 KRWE 158 (158)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9997
|
| >d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=100.00 E-value=6.7e-43 Score=264.64 Aligned_cols=161 Identities=77% Similarity=1.175 Sum_probs=151.4
Q ss_pred EEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceee
Q 040515 90 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 90 ~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v 169 (251)
|++|+|+++++|+++++.|+++++.+..+|+++|++++++|+||||||+|||||+.+|.+|..+++++|+......+++|
T Consensus 1 Y~~i~G~~~~~Dg~~~t~p~~~g~~~~~~~~~al~~a~~~~~di~yveaHGtGT~~gD~~E~~al~~~~~~~~~~~~~~i 80 (161)
T d2ix4a2 1 YAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAF 80 (161)
T ss_dssp CEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHTHHHHTSCSEE
T ss_pred CeEEEEEEEcCCCCCCcCCChhHHHHHHHHHHHHHhcCCCccccCEEEEeccCCCCCcHHHHhhhHhhhcccccccceee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987654556999
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
+++|+++||+++|||++++++++++|+++.+||++|+++|+|.++....++...++...|++++|+|||||+|+|+||++
T Consensus 81 ~s~K~~~GH~~~AsG~~~li~~~l~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nsfGfgG~Na~lvl~~ 160 (161)
T d2ix4a2 81 SSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFAS 160 (161)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTCSSBCTTCCSSSCCCSSCEECCCSEEEEEEEETTTEEEEEEEEC
T ss_pred eccccccCCccchHHHHHHHHHHHHHhcCCCCCccCCCCCCcccCcccCccccCCCCCcCEEEEeCCcccceeEEEEEEe
Confidence 99999999999999999999999999999999999999999999988887666667778999999999999999999997
Q ss_pred c
Q 040515 250 C 250 (251)
Q Consensus 250 ~ 250 (251)
.
T Consensus 161 ~ 161 (161)
T d2ix4a2 161 I 161 (161)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2gfva2 c.95.1.1 (A:252-412) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-42 Score=262.90 Aligned_cols=161 Identities=50% Similarity=0.813 Sum_probs=148.6
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCce
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
+||++|+|+++++|+.+.+.+.+++.++.++++++|++++++|+||||||+|||||+.+|.+|..|+.++|++... ++
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~a~i~p~~i~~ie~HgtGT~~gD~~E~~Al~~~f~~~~~--~~ 78 (161)
T d2gfva2 1 KIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAAS--RV 78 (161)
T ss_dssp CCCEEEEEEEEEECCSCSSSCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHGGGGT--TS
T ss_pred CEEEEEeeEEEeCCCCCCCCCCCCHHHHHHHHHHhHhhcccCcceEEEEEeecccCcccHHHHHHHHHHHhccccc--cc
Confidence 5899999999999999998999999999999999999999999999999999999999999999999999986543 48
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEe
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl 247 (251)
+|+++|+++||+++|||++++++++++|++++|||++++++|++.+.....++...+..+.+++++|+|||||+|+|+||
T Consensus 79 ~i~s~Ks~~GH~~~AsG~~~li~~ll~l~~~~ipp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~vnsfGfgG~Na~lil 158 (161)
T d2gfva2 79 LVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGMEYTLCNSFGFGGTNGSLIF 158 (161)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHSCEECCBTTCSSBCTTCCSBCCBSSCEECSSCCEEEEEEEEGGGEEEEEEE
T ss_pred eeccccccccccHHHHHHHHHHHHHHHhcCCEecccccccccccccccccccccCccCCCCcEEEEeCcCccceeEEEEE
Confidence 99999999999999999999999999999999999999999999887776664444455679999999999999999999
Q ss_pred eec
Q 040515 248 TKC 250 (251)
Q Consensus 248 ~~~ 250 (251)
+|.
T Consensus 159 ~~~ 161 (161)
T d2gfva2 159 KKI 161 (161)
T ss_dssp ECC
T ss_pred EEC
Confidence 973
|
| >d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-42 Score=261.20 Aligned_cols=159 Identities=58% Similarity=0.910 Sum_probs=148.5
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCce
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSL 167 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~ 167 (251)
+||++|+|+++++|+.+.+.++|+++++..+++++|+++|++|+||||||+|||||+.+|.+|..|++++|+.... ++
T Consensus 1 rIya~I~G~~~~~Dg~~~~~~~p~g~~~~~~~~~al~~agi~p~~I~~ie~HgtGT~~gD~~E~~Al~~~f~~~~~--~~ 78 (159)
T d1j3na2 1 RIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAK--RL 78 (159)
T ss_dssp CCCEEEEEEEEEECCSCSSCCCTTCHHHHHHHHHHHHHHTCCGGGCCEEECCCCSCHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred CEEEEEeEEEEeCCCCCCCCCCcCHHHHHHHhhccHhhcCCCHHHcCeEeccccCCccchHHHHHHHHHHHHhcCC--Cc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999976543 48
Q ss_pred eeecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEe
Q 040515 168 AFSSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLF 247 (251)
Q Consensus 168 ~v~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl 247 (251)
+|++.|+++||+++|||++++++++++|++++|||+++++++++++++..+++. +..+.+++++|+|||||+|+|+||
T Consensus 79 ~i~s~K~~~GH~~~asG~~~li~~~~~l~~~~ipp~~~~~~~~~~~~~~~~~~~--~~~~~~~a~v~sfGfgG~Na~~vl 156 (159)
T d1j3na2 79 MVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPELDLDFVPEP--REAKVDYALSNSFAFGGHNAVLAF 156 (159)
T ss_dssp EEECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCTTTTSBCTTSCSBCCSSC--EECCCSEEEEEEECTTSEEEEEEE
T ss_pred eEecccccccccccccccchhhhhhhHhhCCEeccccccccccceeeeeccCcc--cCCCCCEEEEeCCCCCceeEEEEE
Confidence 999999999999999999999999999999999999999999999998888743 345688999999999999999999
Q ss_pred eec
Q 040515 248 TKC 250 (251)
Q Consensus 248 ~~~ 250 (251)
+|.
T Consensus 157 ~kv 159 (159)
T d1j3na2 157 KRV 159 (159)
T ss_dssp ECC
T ss_pred EEC
Confidence 984
|
| >d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.8e-38 Score=234.08 Aligned_cols=151 Identities=43% Similarity=0.704 Sum_probs=134.4
Q ss_pred EEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceee
Q 040515 90 YAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAF 169 (251)
Q Consensus 90 ~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v 169 (251)
|++|+|++.++|+.+++.| +++++.++++++|+++ +.||||||+|||||+.+|.+|..|++++|+.. +++|
T Consensus 1 Yaei~G~g~~~Dg~~~taP--~~~~~~~~~~~al~~a---~~~I~~v~aHgtGT~~gD~~E~~Al~~vfg~~----~~~v 71 (151)
T d2vbaa2 1 YAEIVGYGATSDGADMVAP--SGEGAVRCMKMAMHGV---DTPIDYLNSHGTSTPVGDVKELAAIREVFGDK----SPAI 71 (151)
T ss_dssp CEEEEEEEEEECCSCTTSC--CSHHHHHHHHHHHTTC---CSCCCEEECCCCSCHHHHHHHHHHHHHHHTTC----CCEE
T ss_pred CEEEEEEEEecCCCCCCCc--CHHHHHHHHHHhhhcC---cccceeEEEeccCCccccHHHHHHHHHHhCCC----Cccc
Confidence 7899999999999887765 5778899999999876 57899999999999999999999999999753 3789
Q ss_pred ecccCCccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeee
Q 040515 170 SSTKGAIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTK 249 (251)
Q Consensus 170 ~~~k~~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~ 249 (251)
++.|+++||+++|||++++++++++|+++++||++|++++++++....++ .+.+..+.+.+++|+|||||+|+|+||+|
T Consensus 72 ~s~K~~~GH~~~asG~~~l~~~~~~l~~~~ipp~~~~~~~~~~~~~~~v~-~~~~~~~~~~a~~nsfGfGG~Na~~vl~~ 150 (151)
T d2vbaa2 72 SATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIV-TETTDRELTTVMSNSFGFGGTNATLVMRK 150 (151)
T ss_dssp ECTHHHHCBCGGGHHHHHHHHHHHHHHHTEECCCCCCSSBCTTCTTSEEC-CSCEECCCCEEEEEEEETTTEEEEEEEEC
T ss_pred ccchhhccccccchhhhhhhHHHHHHHcCCcccccCcccccccccccccc-CcCcCCCCCEEEEeCCcccceeEEEEEEE
Confidence 99999999999999999999999999999999999999999987644344 34445678999999999999999999998
Q ss_pred c
Q 040515 250 C 250 (251)
Q Consensus 250 ~ 250 (251)
.
T Consensus 151 v 151 (151)
T d2vbaa2 151 L 151 (151)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]
Probab=99.74 E-value=1.4e-18 Score=140.96 Aligned_cols=89 Identities=87% Similarity=1.326 Sum_probs=84.7
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||++|+++|++|+||++||||+|....|..+..|..++.++...+.+|+..|+|||.+++|+
T Consensus 170 Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p~~~~rPFD~~a~G~v~g 249 (270)
T d2ix4a1 170 GPNHAAVTACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIG 249 (270)
T ss_dssp SCEECBCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGGSCCTTBTTCCSBCBB
T ss_pred CCCcccccccchhhHHHHHHHHHHHcCCCCeeccccchhhhhhhhHHHHHhcccccCCCCCCCCCccCCCCCCCCCEeeE
Confidence 89999999999999999999999999999999999999999999999999999999877788999999999999999
Q ss_pred ---------chhhhhhcCCeE
Q 040515 78 ---------ELEHAKKRGAKI 89 (251)
Q Consensus 78 ---------~~~~A~~~g~~~ 89 (251)
++++|++||++|
T Consensus 250 EGaa~~vLe~l~~A~~rG~~I 270 (270)
T d2ix4a1 250 EGSGVIVLEEYEHAKRRGAKI 270 (270)
T ss_dssp CEEEEEEEEEHHHHHHTTCCC
T ss_pred eeEEEEEEeeHHHHHHccCCC
Confidence 788999999875
|
| >d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase I species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=8.9e-18 Score=135.03 Aligned_cols=88 Identities=51% Similarity=0.758 Sum_probs=80.5
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+||+.||.+|+++|++|++|++||||+|. ..+.....+..++.++...+.+|+..|+|||.+++|+
T Consensus 154 Gp~~~i~taCaSsl~Ai~~A~~~i~~G~~d~alvgg~~~-~~~~~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~g 232 (253)
T d2vbaa1 154 GVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEE-LCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIA 232 (253)
T ss_dssp SCEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEC-CCHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBB
T ss_pred cceeeeeccchhHHHHHHHHHHhcchhccceeeecchhh-hhcchhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeee
Confidence 899999999999999999999999999999999999997 5555677888899998877788999999999999999
Q ss_pred ---------chhhhhhcCCeE
Q 040515 78 ---------ELEHAKKRGAKI 89 (251)
Q Consensus 78 ---------~~~~A~~~g~~~ 89 (251)
++++|++||++|
T Consensus 233 EGa~~lvLe~le~A~~rGa~I 253 (253)
T d2vbaa1 233 GGGGMVVVEELEHALARGAHI 253 (253)
T ss_dssp CEEEEEEEEEHHHHHHTTCCC
T ss_pred eEEEEEEEccHHHHHHccCcC
Confidence 789999999875
|
| >d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Synechocystis sp. [TaxId: 1143]
Probab=99.68 E-value=2.9e-17 Score=131.72 Aligned_cols=86 Identities=57% Similarity=0.924 Sum_probs=79.3
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||.+|+++|++|++|++||||+|..+++..+..|..++.++.. +.+|+..|+|||..++|+
T Consensus 153 Gp~~tv~~ACsS~l~Ai~~A~~~i~~G~~d~~lvGg~~~~~~~~~~~~f~~~~~ls~~-~~~p~~~~rPFD~~~dG~~~g 231 (250)
T d1e5ma1 153 GPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLSYAGFASARALSFR-NDDPLHASRPFDKDRDGFVMG 231 (250)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCGGGTCCTTBTTCCSBCBB
T ss_pred CCCccccccchhhhhhhHHHhhcccCCcccccccccchhhcCcHHHHHHHhcCCccCC-CCCCCCccCCCCCCCCCEeeE
Confidence 8999999999999999999999999999999999999998999999999999999864 566778999999999999
Q ss_pred ---------chhhhhhcCC
Q 040515 78 ---------ELEHAKKRGA 87 (251)
Q Consensus 78 ---------~~~~A~~~g~ 87 (251)
++++|++||+
T Consensus 232 EGa~~~vLe~l~~A~~rGA 250 (250)
T d1e5ma1 232 EGSGILILEELESALARGA 250 (250)
T ss_dssp CEEEEEEEEEHHHHHHTTC
T ss_pred eeEEEEEEeeHHHHHHCcC
Confidence 6778888874
|
| >d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.5e-17 Score=133.50 Aligned_cols=86 Identities=58% Similarity=0.940 Sum_probs=78.8
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+||+.||.+|+++|++|++|++||||+|..+++..+..|..++.++.. +..|+..|+|||..++|+
T Consensus 153 Gp~~tv~~aCaSg~~Ai~~A~~~i~~G~~d~~lvgg~d~~~~~~~~~~f~~~~~ls~~-~~~p~~~~rPFD~~rdG~v~g 231 (250)
T d2gfva1 153 GPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTR-NDNPQAASRPWDKERDGFVLG 231 (250)
T ss_dssp SCEECCCCGGGHHHHHHHHHHHHHHHTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHCCTTBTTCCSBCBB
T ss_pred CCccccccccchhhhhhHHHHHHHHcCCcchhhcccchhhcCcHHHHHHHhcccccCC-CCCCCCccCCCCCCCCCEeee
Confidence 8999999999999999999999999999999999999998999999999999999865 455677899999999999
Q ss_pred ---------chhhhhhcCC
Q 040515 78 ---------ELEHAKKRGA 87 (251)
Q Consensus 78 ---------~~~~A~~~g~ 87 (251)
++++|++||+
T Consensus 232 EGaa~lVLE~~~~A~~rGA 250 (250)
T d2gfva1 232 DGAGMLVLEEYEHAKKRGA 250 (250)
T ss_dssp CEEEEEEEEEHHHHHHHTC
T ss_pred eEEEEEEECcHHHHHHCcC
Confidence 6778888874
|
| >d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoacyl-ACP synthase II species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=2e-17 Score=132.73 Aligned_cols=86 Identities=56% Similarity=0.964 Sum_probs=78.6
Q ss_pred CCeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChhhHHHHhhhhhcccccCCCCCCcccccccCCCcc---
Q 040515 1 GPNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDALSMAGFCKSRALTTKYNGTPQEASRPFDCGRDGF--- 77 (251)
Q Consensus 1 Gp~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~g~--- 77 (251)
||+++|+++|+|++.||.+|+++|++|++|++||||+|....|..+..|...+.++.. +..|++.|+|||..++|+
T Consensus 152 Gp~~tv~~aCaSsl~Ai~~A~~~i~~G~~d~alvgg~d~~~~p~~~~~f~~~~~ls~~-~~~p~~~~rPFd~~~dG~v~g 230 (249)
T d1j3na1 152 GPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAITPMAIGAFAVMRALSTR-NEEPEKASRPFTLSRDGFVMG 230 (249)
T ss_dssp SCBCCBCCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECCCSHHHHHHHHHTTCBCCC-TTCHHHHCCTTBTTCCCBCBB
T ss_pred CCccccccccchHHHHHHHHHHHHHcCCCCeeeecchHhhhCcHHHHHHHhCCcccCC-CCCCCCCCCCccCCCCCEeeE
Confidence 8999999999999999999999999999999999999998999999999999999864 455678899999999998
Q ss_pred ---------chhhhhhcCC
Q 040515 78 ---------ELEHAKKRGA 87 (251)
Q Consensus 78 ---------~~~~A~~~g~ 87 (251)
++++|++||+
T Consensus 231 EGa~~lvLe~~~~A~~rGA 249 (249)
T d1j3na1 231 EGAGVLVLEAYEHAKKRGA 249 (249)
T ss_dssp CEEEEEEEEEHHHHHHTTC
T ss_pred eEEEEEEEccHHHHHHCcC
Confidence 6778888874
|
| >d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=1.1e-16 Score=112.23 Aligned_cols=120 Identities=24% Similarity=0.317 Sum_probs=93.7
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccC--CC-
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHA--TS- 164 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~--~~- 164 (251)
+|+++|.++.... ..|...+.+...+++++|+++|++++|||+||.| |++|.+.+...+. .+
T Consensus 1 KPlA~i~~~~~~g-----~~P~~~~~~P~~A~~~~L~r~gl~~~Did~~Ein----------EAFAaq~l~~~~~~~l~~ 65 (125)
T d1ulqa2 1 RPLARVRAIAVAG-----VPPRIMGIGPVPATRKALERAGLSFSDLGLIELN----------EAFAAQALAVLREWSLSM 65 (125)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHTTCCGGGCSEEEEC----------CSBHHHHHHHHHHHTCCT
T ss_pred CCeEEEEEEEEEe-----cCHHHHhhccHHHHHhHhhccCcCccccchheec----------cccchhHHHHHHHhhccC
Confidence 4678999998765 3444455678899999999999999999999999 9888776643221 11
Q ss_pred CceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccee
Q 040515 165 GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTN 242 (251)
Q Consensus 165 ~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~ 242 (251)
.+-.++...+ .+|||+||||...++.++.+|++ .+.++++++.+..||..
T Consensus 66 d~~kvN~~GGaIAlGHP~GASGari~~tl~~~L~~----------------------------~~~~~G~as~C~gGG~g 117 (125)
T d1ulqa2 66 EDQRLNPNGGAIALGHPLGASGARILTTLVHEMRR----------------------------RKVQFGLATMCIGVGQG 117 (125)
T ss_dssp TCTTBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHH----------------------------TTCSEEEEEEEETTTEE
T ss_pred chhhcCCCCCcccccCCccccchhHHHHHHHHHHh----------------------------cCCCEEEEEecccccce
Confidence 1112444555 68999999999999999999986 23578899989999999
Q ss_pred eeeEeeec
Q 040515 243 ASLLFTKC 250 (251)
Q Consensus 243 ~~~vl~~~ 250 (251)
.++++|+.
T Consensus 118 ~A~~iE~i 125 (125)
T d1ulqa2 118 IAVVVEGM 125 (125)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEeC
Confidence 99999973
|
| >d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=1.6e-16 Score=111.40 Aligned_cols=119 Identities=23% Similarity=0.348 Sum_probs=93.1
Q ss_pred CCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCC-
Q 040515 86 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS- 164 (251)
Q Consensus 86 g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~- 164 (251)
|-+|+++|.+++... ..|...+.+...+++++|+++|++++|||+||.| |++|.+.+...+..+
T Consensus 2 gl~plAri~~~a~~g-----~~P~~m~~gPv~Ai~klL~r~gl~~~Did~~Ein----------EAFA~q~l~~~~~l~i 66 (124)
T d1afwa2 2 NLPVLGRYIDFQTVG-----VPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEIN----------EAFAAQALYCIHKLGI 66 (124)
T ss_dssp TCCCCEEEEEEEEEE-----CCGGGGGGHHHHHHHHHHHHHTCCGGGCSEEEEC----------CSBHHHHHHHHHHHTC
T ss_pred CCcEEEEEEEEEEEe-----cCHHHhhhChHHHHHHHHHHcCCCcccCcEEEec----------cchhHHHHHHHHHcCC
Confidence 457889999998765 3455556788999999999999999999999999 998888876433221
Q ss_pred CceeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccccee
Q 040515 165 GSLAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTN 242 (251)
Q Consensus 165 ~~~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~ 242 (251)
.+-.++-..+ .+|||+||||...++.++.+|++ .++++++.+..||..
T Consensus 67 d~~kvN~~GGaiAlGHP~GaSGarlv~~l~~~L~~------------------------------~~~glas~C~ggG~G 116 (124)
T d1afwa2 67 DLNKVNPRGGAIALGHPLGCTGARQVATILRELKK------------------------------DQIGVVSMCIGTGMG 116 (124)
T ss_dssp CGGGBSTTCCHHHHCBCTTTHHHHHHHHHHHHSCT------------------------------TCEEEEEEEETTTEE
T ss_pred ChhhccccCccceecCCcCCchHHHHHHHHHHhcc------------------------------CCEEEEEEcccCCcE
Confidence 1123444444 68999999999999999988853 146888888888988
Q ss_pred eeeEeee
Q 040515 243 ASLLFTK 249 (251)
Q Consensus 243 ~~~vl~~ 249 (251)
.++|++|
T Consensus 117 ~a~~ier 123 (124)
T d1afwa2 117 AAAIFIK 123 (124)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8899886
|
| >d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=99.61 E-value=1.7e-16 Score=111.17 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=94.3
Q ss_pred eEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCC-Cc
Q 040515 88 KIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS-GS 166 (251)
Q Consensus 88 ~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~-~~ 166 (251)
+|+++|.++.... ..|...+.+...+++++|+++|++.+|||+||.| |++|.+.+...+..+ .+
T Consensus 2 ~Plari~~~a~~g-----~dP~~mg~~Pv~A~~~lL~r~gl~~~Did~~Ein----------EAFA~q~la~~~~l~id~ 66 (124)
T d1m3ka2 2 QPLGRIVSWATVG-----VDPKVMGTGPIPASRKALERAGWKIGDLDLVEAN----------EAFAAQACAVNKDLGWDP 66 (124)
T ss_dssp CCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCSEEEEC----------CSBHHHHHHHHHHHCCCG
T ss_pred CcEEEEEEEEEEe-----cChHHhccchHHHHHHHHHHcCCChhcccHHHhc----------ccchhheeeehHhhCCCh
Confidence 4678999988765 3445556678899999999999999999999999 988887775432211 11
Q ss_pred eeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeee
Q 040515 167 LAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNAS 244 (251)
Q Consensus 167 ~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~ 244 (251)
-.++...+ .+|||+||||...++.++..|+++ +.++++++.+..||...+
T Consensus 67 ~kvN~~GGaiAlGHP~GaSGarl~~tl~~~L~~~----------------------------~~~~Glas~C~gGG~g~A 118 (124)
T d1m3ka2 67 SIVNVNGGAIAIGHPIGASGARILNTLLFEMKRR----------------------------GARKGLATLCIGGGMGVA 118 (124)
T ss_dssp GGBSTTCCHHHHCCCTTTHHHHHHHHHHHHHHHH----------------------------TCSEEEEEEEETTTEEEE
T ss_pred hhcCCCCCccccccCcCccchhHHHHHHHHHHhc----------------------------CCCEEEEEecccccceeE
Confidence 22444444 689999999999999999999862 357899998999999999
Q ss_pred eEeeec
Q 040515 245 LLFTKC 250 (251)
Q Consensus 245 ~vl~~~ 250 (251)
++||+.
T Consensus 119 ~liE~v 124 (124)
T d1m3ka2 119 MCIESL 124 (124)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999973
|
| >d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=99.61 E-value=5.2e-16 Score=109.43 Aligned_cols=122 Identities=24% Similarity=0.306 Sum_probs=95.1
Q ss_pred CCeEEEEEeeeeecCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCC-
Q 040515 86 GAKIYAEVRGYGMSGDAHHITQPHIDGKGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATS- 164 (251)
Q Consensus 86 g~~~~a~i~g~~~~~~~~~~~~~~~~~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~- 164 (251)
|-+|+++|++++... ..|...+.+...+++++|+++|++++|||+||.| |++|.+.+...+...
T Consensus 1 Gl~pla~i~~~~~~g-----~dP~~mg~~p~~A~~klL~ragl~~~did~~Ein----------EAFA~q~l~~~~~~~~ 65 (128)
T d1wdkc2 1 GLEPLAVIRSMAVAG-----VDPAIMGYGPVPATQKALKRAGLNMADIDFIELN----------EAFAAQALPVLKDLKV 65 (128)
T ss_dssp TCCCSEEEEEEEEEE-----CCGGGGGGTHHHHHHHHHHHHTCCGGGCCEEEEC----------CSBHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEEEEEe-----cCHHHhccCcHHHHHHHhhhcCccccccceEEee----------cccchhhhhhhhhccc
Confidence 346889999998765 2344456678899999999999999999999999 888877764322211
Q ss_pred Cc---eeeecccC--CccchhhhhhHHHHHHHHHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEeccccc
Q 040515 165 GS---LAFSSTKG--AIGHLLGAAGAVEAIFAVLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFG 239 (251)
Q Consensus 165 ~~---~~v~~~k~--~~Gh~~~AsG~~~l~~~~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~g 239 (251)
.. -.++-..+ .+|||+||||...++.++.+|+++ +.++++++.+..|
T Consensus 66 ~~~~~ekvN~~GGaiAlGHP~GASGaRlv~~l~~~L~~~----------------------------~~~~Glas~C~gG 117 (128)
T d1wdkc2 66 LDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQN----------------------------GGTFGLSTMCIGL 117 (128)
T ss_dssp GGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHHHHHHHT----------------------------TCSEEEEEEEETT
T ss_pred ccCCcceecCCCCcccccccccccchhHHHHHHHHHHhc----------------------------CCCEEEEEecccc
Confidence 00 12444455 789999999999999999999862 3578899989999
Q ss_pred ceeeeeEeeec
Q 040515 240 GTNASLLFTKC 250 (251)
Q Consensus 240 G~~~~~vl~~~ 250 (251)
|...+++||+.
T Consensus 118 G~g~A~~iErv 128 (128)
T d1wdkc2 118 GQGIATVFERV 128 (128)
T ss_dssp TEEEEEEEECC
T ss_pred cceeEEEEEeC
Confidence 99999999973
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.46 E-value=2.2e-07 Score=77.56 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
..+.+.++++|+++|++++|||++..|-.+....| .+.+.++-... .++.+ ..-..+||+.+||=.+.+-+
T Consensus 266 ~~~~~~i~~~L~~~gl~~~did~~i~Hq~~~~i~~-----~i~~~Lgl~~e--k~~~s~~~l~~~GN~~sasip~~L~~- 337 (372)
T d1teda_ 266 SGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIE-----QSVRSLGISAE--LAAQSWDVLARFGNMLSVSLIFVLET- 337 (372)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCSCEEECCSCHHHHH-----HHHHHHTCCGG--GGHHHHHHHHHHCBCTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCCHHHhhhhhccCccHHHHH-----HHHHHcCCCHH--HhhhhHHHHhccCCcHHHHHHHHHHH-
Confidence 45678899999999999999999999966544322 23333332111 12111 11124689888774433322
Q ss_pred HHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 192 VLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 192 ~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
.++.+. ...+.+.+++.+||.|=+...+||+..
T Consensus 338 --~l~~g~------------------------~~~g~d~vll~~fG~G~s~~~~ll~~~ 370 (372)
T d1teda_ 338 --MVQQAE------------------------SAKAISTGVAFAFGPGVTVEGMLFDII 370 (372)
T ss_dssp --HHHSCS------------------------SSSSSEEEEEEEEETTTEEEEEEEEEC
T ss_pred --HHHhCC------------------------CCCCCCEEEEEEEcHHHhHHHHhheee
Confidence 233322 112236777788998878888998865
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=98.42 E-value=6.8e-08 Score=76.61 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=40.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 44 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~ 44 (251)
|.++|+..|+||+.||..|++.|++|++|++|+||+|+|+..+
T Consensus 86 p~~tV~~~C~Sgl~Ai~~aa~~I~sG~~dvvlAgGvEsmS~~p 128 (262)
T d1wdkc1 86 AAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVS 128 (262)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEETTTSC
T ss_pred chhhccccccHHHHHHHHHHHHHHhhcCCceeeeccccccccc
Confidence 6789999999999999999999999999999999999987643
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=98.42 E-value=4.8e-08 Score=77.82 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=40.2
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 44 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~ 44 (251)
|+++|+..|+||++||.+|+++|++|++|++|+||+|+++..+
T Consensus 81 pa~tv~~~C~Sg~~Ai~~Aa~~I~~G~~dvvlagG~EsmS~~p 123 (268)
T d1m3ka1 81 TAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123 (268)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHTTSCSCEEEEEEEESTTCC
T ss_pred cceeecccCcccchHHHHHHHHHhCCCceEEeeccccccccCc
Confidence 6799999999999999999999999999999999999977654
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=98.41 E-value=6.5e-08 Score=77.32 Aligned_cols=43 Identities=28% Similarity=0.432 Sum_probs=40.4
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcChh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDAL 44 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~~ 44 (251)
|.+||+..|+||+.||.+|+++|++|..|++|+||+|+++..+
T Consensus 79 p~~tVn~~CaSg~~Ai~~a~~~I~~G~~d~~lagG~EsmS~~p 121 (273)
T d1ulqa1 79 AGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRAP 121 (273)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEESSSCC
T ss_pred ceEEEecccchHHHHHHHHHHHHhcCCCccceeeeccccchhh
Confidence 6799999999999999999999999999999999999987654
|
| >d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Thiolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=5.8e-08 Score=77.29 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=39.6
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCcCh
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSIDA 43 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~~~ 43 (251)
|.+||+..|+||++||..|+++|++|+.|++|+||+|+|+..
T Consensus 93 pa~tVnr~CaSg~~Ai~~Aa~~I~~G~~divlagG~EsmS~~ 134 (269)
T d1afwa1 93 PFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNN 134 (269)
T ss_dssp CEEEEECGGGHHHHHHHHHHHHHHTTSCSEEEEEEEEEHHHH
T ss_pred cchhccccchHHHHHHHHHHHHHhhccccceeeeeccccccc
Confidence 789999999999999999999999999999999999997654
|
| >d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=7.1e-05 Score=53.52 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
..+.++++++|+++|++++|||++..|-.+.. -..++.+.++-... ... .+.-..+||+.+|+=.+.+.++
T Consensus 48 ~~v~~~i~~~L~~~gl~~~dId~~i~Hqa~~~-----i~~~v~~~lgl~~e--k~~-~~~~~~~GNt~sasip~~L~~a- 118 (148)
T d1u6ea2 48 FKMGDVGRRAMDAAGVRPDQIDVFVPHQANSR-----INELLVKNLQLRPD--AVV-ANDIEHTGNTSAASIPLAMAEL- 118 (148)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEECCSCHH-----HHHHHHHHHTCCTT--CEE-CCTHHHHCBCGGGHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCcccccEEEeccccHH-----HHHHHHHhcCCCch--hhh-hhhHHhhCCCccchHHHHHHHH-
Confidence 34567899999999999999999999944433 33444444442211 122 2233467999999866665544
Q ss_pred HHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 193 LTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 193 ~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
++.+.+ .+....++.+||.|=+-+++||+
T Consensus 119 --~~~g~i-------------------------~~Gd~vll~gfG~G~s~~a~llr 147 (148)
T d1u6ea2 119 --LTTGAA-------------------------KPGDLALLIGYGAGLSYAAQVVR 147 (148)
T ss_dssp --HHHTSS-------------------------CTTCEEEEEEEETTTEEEEEEEE
T ss_pred --HHcCCC-------------------------CCCCEEEEEEEchhhhheEEEEe
Confidence 344331 23457777789988777788775
|
| >d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=97.59 E-value=0.00013 Score=52.19 Aligned_cols=98 Identities=19% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHH
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~ 193 (251)
.+.++++++|+++|++++|||++..|-.+.. =.+.+.+.++-.. ...+ .+. ..+||+.+|+=.+.+..
T Consensus 48 ~vp~~i~~~L~~~g~~~~dId~~i~Hqa~~~-----~~~~i~~~lgi~~--~k~~-~~~-~~~Gn~~sasip~~L~~--- 115 (149)
T d1ub7a2 48 VMNTATLEAIEKAGLTPEDIRLFVPHQANLR-----IIDAARERLGLPW--ERVA-VNV-DRYGNTSTASIPLALKE--- 115 (149)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEECCSCHH-----HHHHHHHTTTCCG--GGBC-CCH-HHHCBCGGGHHHHHHHH---
T ss_pred HHHHHHHHHHHhhccccccccEEEeeccchH-----HHHHHHhhccchh--hHHH-HHH-HHhcCCcchhHHHHHHH---
Confidence 3457889999999999999999999944432 2222333222111 1122 222 35799999885544433
Q ss_pred HHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 194 TIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 194 ~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
.++.+. ..+...+++.++|.|-+..++||+
T Consensus 116 ~~~~~~-------------------------~~~Gd~vll~g~G~G~s~ga~llr 145 (149)
T d1ub7a2 116 AVDAGR-------------------------IREGDHVLLVSFGAGLTWAAAVLT 145 (149)
T ss_dssp HHHHTS-------------------------SCTTCEEEEEEEETTTEEEEEEEE
T ss_pred HHHcCC-------------------------CCCCCEEEEEEEchHhhhEEEEEE
Confidence 334433 123467788899988788888775
|
| >d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00027 Score=50.05 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHH
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~ 193 (251)
.+.++++++|+++|++++|||++..|-.+... .+.+.+.++-... +++ ..-..+||+.+|+=.+.+.++
T Consensus 45 ~~~~~i~~~L~~~g~~~~dId~~i~Hq~~~~~-----~~~~~~~l~l~~~--k~~--~~~~~~GN~~sasip~~L~~~-- 113 (143)
T d1hnja2 45 ELAHIVDETLAANNLDRSQLDWLVPHQANLRI-----ISATAKKLGMSMD--NVV--VTLDRHGNTSAASVPCALDEA-- 113 (143)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH-----HHHHHHHTTCCGG--GBC--CCHHHHCBCGGGHHHHHHHHH--
T ss_pred hhhHHHHHHHHHhhhcccccceEEeccCchHH-----HHHHHHhCccchh--hhh--hhhhhhcccccchHHHHHHHH--
Confidence 45678899999999999999999999554332 2333333332111 122 223367999998866554443
Q ss_pred HHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 194 TIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 194 ~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
++.+. ..+...+++.+||.|=+.+++||+
T Consensus 114 -~~~~~-------------------------~~~Gd~vll~g~G~G~s~g~~llr 142 (143)
T d1hnja2 114 -VRDGR-------------------------IKPGQLVLLEAFGGGFTWGSALVR 142 (143)
T ss_dssp -HHTTC-------------------------SCTTCEEEEEEEETTTEEEEEEEE
T ss_pred -HHhCC-------------------------CCCCCEEEEEEEehhhhhEEEEEE
Confidence 33332 123466777789988777777775
|
| >d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=97.23 E-value=0.0012 Score=47.09 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
..+.++++++|+++|++++|||++..|-.+.. -..++.+.++-... .. +...-..+|++.+||=.+.|.
T Consensus 48 ~~vp~~i~~~L~~~gl~~~dId~~i~Hq~~~~-----~~~~v~~~lgi~~e--k~-~~~~~~~~GNt~Sasip~~L~--- 116 (153)
T d1mzja2 48 ADVVPAAREALEVAGLTVGDLVAFVPHQANLR-----IIDVLVDRLGVPEH--VV-VSRDAEDTGNTSSASVALALD--- 116 (153)
T ss_dssp HHHHHHHHHHHHTTTCCGGGCSEEEECCSCHH-----HHHHHHHHHTCCTT--SE-ECCTHHHHCBCTTHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCcccCCEEEEcCCcHH-----HHHHHHHHhCCCch--hc-chhhhhhcCCcccchHHHHHH---
Confidence 35667889999999999999999999955533 33344444442211 12 222224578888886333322
Q ss_pred HHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 193 LTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 193 ~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
..++.+.+ .+...+++.+||.|=+.+.++|+-+
T Consensus 117 ~~~~~~~~-------------------------~~Gd~ill~~fG~G~s~~~~~l~~~ 149 (153)
T d1mzja2 117 RLVRSGAV-------------------------PGGGPALMIGFGAGLSYAGQALLLP 149 (153)
T ss_dssp HHHHHTSS-------------------------CTTCEEEEEEEETTTEEEEEEEECC
T ss_pred HHHHcCCC-------------------------CCCCEEEEEEEchhhhhhEEEEEec
Confidence 23344321 2245667778887766667777643
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00052 Score=50.22 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=36.5
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCC
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 40 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~ 40 (251)
+++.|+.+|+++++||..|..+|++|.++.+||++.|..
T Consensus 104 ~~~di~~~C~g~~~al~~A~~~i~sg~~~~~Lvv~~e~~ 142 (174)
T d1hnja1 104 PAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVL 142 (174)
T ss_dssp CEEEECCGGGHHHHHHHHHHHHHHTTSCSEEEEEEEECH
T ss_pred hhhhhhhhhccHHHHHHHHHHHHhcCCcceeEEEeeehh
Confidence 478899999999999999999999999999999999973
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=96.59 E-value=0.00054 Score=50.45 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=36.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCC
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESS 40 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~ 40 (251)
+++.++.+|+++++||..|..+|++|.++.+||+++|..
T Consensus 111 ~~~Dv~~~C~g~~~aL~~A~~~i~~~~~~~~LvV~~e~~ 149 (181)
T d1mzja1 111 GGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERM 149 (181)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHSSCSCEEEEEEEEG
T ss_pred cceeHHhhhccHHHHHHHHhCHhhcCCCceeEEeeeccc
Confidence 367889999999999999999999999999999999974
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.001 Score=48.50 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=37.1
Q ss_pred CeeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 2 PNHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 2 p~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+++.|+.+|++.+.+|..|..+|++|.++.+||+++|..+
T Consensus 101 ~~~di~~~C~g~~~al~~a~~~~~~~~~~~~Lvv~~e~~S 140 (172)
T d1ub7a1 101 FAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALS 140 (172)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHHTTSCSEEEEEEEECGG
T ss_pred cceeehhccccHHHHHHHHhhhhhcCCcceeEEecccccc
Confidence 4688999999999999999999999999999999999754
|
| >d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.40 E-value=0.002 Score=45.67 Aligned_cols=101 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
..+..+++++|+++|++++|||++..|-.+.. -...+.+.++-.. ..++.. .+-..+||+.+|+=.+.+-
T Consensus 43 ~~~~~~i~~~l~~~g~~~~did~~~~Hq~~~~-----i~~~i~~~Lgl~~--~k~~~s~~~l~~~GN~~sasi~~~L~-- 113 (148)
T d1u0ma2 43 EPLAPALKELAGEHGWDASDLDFYIVHAGGPR-----ILDDLSTFLEVDP--HAFRFSRATLTEYGNIASAVVLDALR-- 113 (148)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSCCEEECSHHH-----HHHHHHHHSCSCG--GGGHHHHHHHHHTCBCTTHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCCHHHCCEEEECCCCHH-----HHHHHHHHhCCCh--hhhhHHHHHHHhcCCCCcchHHHHHH--
Confidence 45778899999999999999999999944432 2333333332111 112111 1123579999888333322
Q ss_pred HHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEee
Q 040515 192 VLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFT 248 (251)
Q Consensus 192 ~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~ 248 (251)
..++.+.+ .+...+++.+||.|=+..+++++
T Consensus 114 -~~~~~~~~-------------------------~~Gd~ill~gfG~G~s~~~~llr 144 (148)
T d1u0ma2 114 -RLFDEGGV-------------------------EEGARGLLAGFGPGITAEMSLGC 144 (148)
T ss_dssp -HHHHSCCC-------------------------CSSCCCEEEEEETTTEEEEEEEE
T ss_pred -HHHHcCCC-------------------------CCCCEEEEEEEchHhEeeEEEEE
Confidence 23333331 12245677788876666666654
|
| >d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS species: Staphylococcus aureus [TaxId: 1280]
Probab=96.00 E-value=0.0019 Score=46.69 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=35.0
Q ss_pred eeecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCC
Q 040515 3 NHAAVTACATGAHSIGDAARMIQFGDSDVMVAGGTES 39 (251)
Q Consensus 3 ~~tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~ 39 (251)
++.++.+|+++++||..|..+|++|..+.+||++.|.
T Consensus 103 ~~dv~~~C~g~~~al~~A~~~i~~~~~~~alvV~sd~ 139 (166)
T d1xpma1 103 CFEMKEACYAATPAIQLAKDYLATRPNEKVLVIATDT 139 (166)
T ss_dssp EEEEESTTTTHHHHHHHHHHHHTTCTTCEEEEEEEEE
T ss_pred EeeecccHHHHHHHHHHHhhHHhcCCCCeEEEEEEce
Confidence 5789999999999999999999999999999999985
|
| >d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Pyrone synthase (PyS, chalcone synthase 2) species: Gerbera hybrid cultivar [TaxId: 18101]
Probab=95.75 E-value=0.034 Score=39.53 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
..+...+++.|+++|++.+|||++.+|-.|... ..++++-++-...+ +..+ .+-..+|.+.+||=..-+-++
T Consensus 47 ~~v~~~v~~~l~~~gl~~~di~~~v~Hqgg~~I-----ld~i~~~L~L~~~~--l~~s~~vl~~yGNtSSaSI~~vL~~~ 119 (160)
T d1ee0a2 47 KNIENAAEKALSPLGITDWNSVFWMVHPGGRAI-----LDQVERKLNLKEDK--LRASRHVLSEYGNLISACVLFIIDEV 119 (160)
T ss_dssp HHHHHHHHHHHGGGTCCCGGGSEEEECCSSHHH-----HHHHHHHTTCCTTT--THHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCccccceEeecCCcHHH-----HHHHHHHcCCCHHH--HHHHHHHHHHhCCCccchHHHHHHHH
Confidence 456778899999999999999999999555433 33333333311111 2211 112246888888844444333
Q ss_pred HHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 192 VLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 192 ~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
...-.. .+ .........+++..+||.|=+...++|++.
T Consensus 120 ~~~~~~---~~------------------~~~~g~~~d~~ll~afG~Glt~~~~llr~~ 157 (160)
T d1ee0a2 120 RKRSMA---EG------------------KSTTGEGLDCGVLFGFGPGMTVETVVLRSV 157 (160)
T ss_dssp HHHHHH---TT------------------CSBTBTTBSEEEEEEEETTTEEEEEEEEEC
T ss_pred Hhhhhh---cC------------------CCCcCCCcCEEEEEEEChHHHHHHHHHeec
Confidence 322111 00 001112345788889999989999999875
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.74 E-value=0.0035 Score=46.68 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=33.8
Q ss_pred eec-chhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 4 HAA-VTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 4 ~tv-~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
+.+ ..+|++++.+|..|..+|++|..+.+||+++|.++
T Consensus 130 ~~i~~~gC~g~~~al~~A~~~l~~~~~~~vLvv~~e~~S 168 (200)
T d1u0ma1 130 IPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS 168 (200)
T ss_dssp EEECSCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEEEGG
T ss_pred eccccchhhHHHHHHHHHHHHHHhCCCCEEEEEEEeccc
Confidence 444 57999999999999999999999999999999743
|
| >d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.60 E-value=0.044 Score=38.63 Aligned_cols=110 Identities=11% Similarity=0.064 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
..+...+.+.|+++|++.+|||++..|--|... ..++++.++-... .++.+ .+-..+|.+-+||=++-+-+.
T Consensus 42 ~~i~~~~~~~l~~~gl~~~di~~~v~Hqgg~~I-----ld~v~~~L~L~~~--~~~~s~~vl~~yGN~SSasi~~vL~~~ 114 (154)
T d1bi5a2 42 KNITKALVEAFEPLGISDYNSIFWIAHPGGPAI-----LDQVEQKLALKPE--KMNATREVLSEYGNMSSACVLFILDEM 114 (154)
T ss_dssp HHHHHHHHHHHGGGTCCCTTSSEEEECCSSHHH-----HHHHHHHHTCCGG--GGHHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccccceEeeccccHHH-----HHHHHHHhCCCHH--HHHHhHHHHHhcCCCCcccHHHHHHHH
Confidence 456678899999999999999999999555443 3333443331111 12211 112256888888744443333
Q ss_pred HHHHhhCCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeec
Q 040515 192 VLTIHHGVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKC 250 (251)
Q Consensus 192 ~~~l~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~ 250 (251)
...-.. .+. .........+++.+||.|=+...+||++.
T Consensus 115 ~~~~~~---~~~------------------~~~g~~~~~~~~~aFG~Glt~~~~llr~~ 152 (154)
T d1bi5a2 115 RKKSTQ---NGL------------------KTTGEGLEWGVLFGFGPGLTIETVVLRSV 152 (154)
T ss_dssp HHHHHH---TTC------------------SBTTTTCSEEEEEEEETTTEEEEEEEEEC
T ss_pred HHhhhc---cCC------------------cccCCCcCEEEEEEEchHHhHHHHHHhcC
Confidence 222211 100 01112346778889999989999999875
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.24 E-value=0.0072 Score=46.11 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=33.5
Q ss_pred ecchhhHHHHHHHHHHHHHHHhCCcCEEEEeCcCCCc
Q 040515 5 AAVTACATGAHSIGDAARMIQFGDSDVMVAGGTESSI 41 (251)
Q Consensus 5 tv~~~casgl~Al~~A~~~I~~G~~d~alvgg~e~~~ 41 (251)
.+..+|++++.+|..|..+|++|..+.+||+++|..+
T Consensus 159 ~~~~~C~g~~~al~~A~~~i~~~~~~~vLvV~~E~~S 195 (235)
T d1bi5a1 159 MYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTA 195 (235)
T ss_dssp EESCCTTHHHHHHHHHHHHHHTSTTCEEEEEEEECGG
T ss_pred eecCccchHHHHHHHHHHHHHcCCCCeEEEEEeeecc
Confidence 3467999999999999999999999999999999743
|
| >d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Dihydropinosylvin synthase species: Scots pine (Pinus sylvestris) [TaxId: 3349]
Probab=95.24 E-value=0.055 Score=38.19 Aligned_cols=110 Identities=13% Similarity=0.090 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeee-cccCCccchhhhhhHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFS-STKGAIGHLLGAAGAVEAIFA 191 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~-~~k~~~Gh~~~AsG~~~l~~~ 191 (251)
..+...+++.|++++++.+|||++..|-.|....|. +++.++-...+ ++.+ .+-..+|.+.+||=.+-+-.+
T Consensus 43 ~~i~~~~~~~l~~~~~~~~did~~i~Hqgg~~Ild~-----v~~~L~L~~~k--~~~s~~~l~~~GN~sSasip~~L~~~ 115 (156)
T d1u0ua2 43 ANIENCMVEAFSQFKISDWNKLFWVVHPGGRAILDR-----VEAKLNLDPTK--LIPTRHVMSEYGNMSSACVHFILDQT 115 (156)
T ss_dssp HHHHHHHHHHHGGGTCCCGGGSEEEECCSCHHHHHH-----HHHHHTCCTTT--THHHHHHHHHHCBCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChhhCceEeecCCcHHHHHH-----HHHHhCCCccc--chhhHHHHhhcCCCCcccHHHHHHHH
Confidence 456788899999999999999999999655544333 33333321111 2211 112356888888744433333
Q ss_pred HHHHhh-CCccCcCCCCCCCCCCCCCCCccccCCCCCCcEEEEecccccceeeeeEeeecC
Q 040515 192 VLTIHH-GVAPLTLNLAKPDPIFNDNFMPLTASKDMPISAALSNSFGFGGTNASLLFTKCQ 251 (251)
Q Consensus 192 ~~~l~~-~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~g~gG~~~~~vl~~~~ 251 (251)
...-.. +. .....+..++++.+||.|=+...+||++.+
T Consensus 116 ~~~~~~~~~----------------------~~~~~~~~~~~~~gfG~Glt~~~~llr~~~ 154 (156)
T d1u0ua2 116 RKASLQNGC----------------------STTGEGLEMGVLFGFGPGLTIETVVLKSVP 154 (156)
T ss_dssp HHHHHHHTC----------------------SBSBTTBSEEEEEEEETTTEEEEEEEEECB
T ss_pred HHhhhhccC----------------------CCcCCCCCEEEEEEECHHHhHHHHHHeeCc
Confidence 222211 11 111223467888899999888999998753
|
| >d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Putative polyketide synthase SCO1206 species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.83 E-value=0.25 Score=36.11 Aligned_cols=78 Identities=15% Similarity=-0.010 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHHH
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAVL 193 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~~ 193 (251)
...++++++|+++|++|+|||+|... +.+...-+.=..-+..-++-. ..+... .+.+...++++..|-.+.-
T Consensus 78 la~~Aa~~aL~~ag~~~~dId~lI~~-s~t~~~~P~~aa~v~~~lg~~---~~~~~~----~i~~~gC~g~~~al~~A~~ 149 (200)
T d1u0ma1 78 RVPAVIQRALDDAELLATDIDVIIYV-SCTGFMMPSLTAWLINEMGFD---STTRQI----PIAQLGCAAGGAAINRAHD 149 (200)
T ss_dssp HHHHHHHHHHHHHTCCGGGCSEEEEE-CSSSCCSSCHHHHHHHHTTCC---TTCEEE----EECSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhhhheEEEe-ccCCCCcchhHHHHHHHHhcC---CCeeEe----ccccchhhHHHHHHHHHHH
Confidence 45688999999999999999998754 333321111111111212211 011111 1123446667777777777
Q ss_pred HHhhCC
Q 040515 194 TIHHGV 199 (251)
Q Consensus 194 ~l~~~~ 199 (251)
.++.+.
T Consensus 150 ~l~~~~ 155 (200)
T d1u0ma1 150 FCTAYP 155 (200)
T ss_dssp HHHHST
T ss_pred HHHhCC
Confidence 777653
|
| >d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Thermus thermophilus [TaxId: 274]
Probab=90.82 E-value=0.26 Score=35.00 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCc-CCcHHHHHHHHHHhh
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTP-LGDTVEATAIRTVFS 159 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~-~~D~~E~~a~~~~~~ 159 (251)
.....++.+++|+++|++|+|||+|.... .|+ ...+.-+..+...++
T Consensus 50 ~~ma~~Aa~~aL~~agi~~~dIdlli~~s-~t~~~~~p~~a~~v~~~Lg 97 (172)
T d1ub7a1 50 SDLAFKAVEDLLRRHPGALEGVDAVIVAT-NTPDALFPDTAALVQARFG 97 (172)
T ss_dssp HHHHHHHHHHHHHHSTTTTTTEEEEEEEC-SSCSEEESCHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhhcCcccccceEEEEec-ccccccccchHHHHHHHhc
Confidence 35667899999999999999999988763 343 223333444444444
|
| >d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway species: Streptomyces sp. r1128 [TaxId: 140437]
Probab=89.21 E-value=0.8 Score=32.58 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCCccEEEecCCCCcC-CcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 112 GKGAILAMTRALKQSGLQSHQVDYVNAHATSTPL-GDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 112 ~~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~-~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
.....++.+++|++++++|+|||+|..+ +.++. .-+.-+..++..++... ...--+ +...++++..|..
T Consensus 59 ~~ma~~Aa~~aL~~a~~~~~dId~li~~-s~~~~~~~p~~a~~v~~~l~~~~----~~~~Dv-----~~~C~g~~~aL~~ 128 (181)
T d1mzja1 59 QVMGVAASRRALEHAGVDPAEIDLVVVS-TMTNFVHTPPLSVAIAHELGADN----AGGFDL-----SAACAGFCHALSI 128 (181)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCEEEEE-CSCCCCCSSCHHHHHHHHHTCTT----CEEEEE-----ECGGGHHHHHHHH
T ss_pred HHHhHHHHHhhhhhccCChhHCeEEEEe-ccCCccccccHHHHHHHhhcCCC----ccceeH-----HhhhccHHHHHHH
Confidence 3456789999999999999999998765 33332 22233444444444221 221111 1234555666666
Q ss_pred HHHHHhhCC
Q 040515 191 AVLTIHHGV 199 (251)
Q Consensus 191 ~~~~l~~~~ 199 (251)
+...++.+.
T Consensus 129 A~~~i~~~~ 137 (181)
T d1mzja1 129 AADAVESGG 137 (181)
T ss_dssp HHHHHHHSS
T ss_pred HhCHhhcCC
Confidence 666666654
|
| >d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Ketoacyl-ACP synthase III (FabH) species: Escherichia coli [TaxId: 562]
Probab=87.89 E-value=0.84 Score=32.23 Aligned_cols=78 Identities=17% Similarity=0.118 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCCCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATSTPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIFAV 192 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~~~ 192 (251)
....++.+++|++++++|+|||++..........-+.-+.-+...++-.. ...--+ +...++++..|..+.
T Consensus 53 ~la~~Aa~~al~~a~~~~~~Id~li~~s~~~~~~~P~~a~~v~~~Lgl~~----~~~~di-----~~~C~g~~~al~~A~ 123 (174)
T d1hnja1 53 TMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG----CPAFDV-----AAACAGFTYALSVAD 123 (174)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSCSSSCHHHHHHHHHTCCS----SCEEEE-----CCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccEEEEecCCccccccchhhhhhhccCCCc----hhhhhh-----hhhhccHHHHHHHHH
Confidence 45568899999999999999999876532222222344455555555321 111111 123445566666666
Q ss_pred HHHhhCC
Q 040515 193 LTIHHGV 199 (251)
Q Consensus 193 ~~l~~~~ 199 (251)
..++.+.
T Consensus 124 ~~i~sg~ 130 (174)
T d1hnja1 124 QYVKSGA 130 (174)
T ss_dssp HHHHTTS
T ss_pred HHHhcCC
Confidence 6666654
|
| >d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Biosynthetic thiolase species: Zoogloea ramigera [TaxId: 350]
Probab=86.41 E-value=0.79 Score=34.92 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCCC-CcCC-cHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHATS-TPLG-DTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAIF 190 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~g-t~~~-D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~~ 190 (251)
+-...+++.+|++++|+|++||.+...-.- ...+ ...-..++ ..... ..+|..++ ...++||+..+..
T Consensus 29 dL~~~~~~~~l~~~~i~~~~Id~vi~G~~~~~~~~~n~ar~~al---~aglp--~~vpa~tv-----~~~C~Sg~~Ai~~ 98 (268)
T d1m3ka1 29 ELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQNPARQAAM---KAGVP--QEATAWGM-----NQLAGSGLRAVAL 98 (268)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEEECSCCTTSCSCHHHHHHH---HTTCC--TTSEEEEE-----ECGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCcEEEEeeccccCcchHHHhHHHH---HhCCc--ccccceee-----cccCcccchHHHH
Confidence 455678999999999999999987765322 1111 11111111 11111 12444444 4568999999999
Q ss_pred HHHHHhhCCc
Q 040515 191 AVLTIHHGVA 200 (251)
Q Consensus 191 ~~~~l~~~~i 200 (251)
+..+++-|..
T Consensus 99 Aa~~I~~G~~ 108 (268)
T d1m3ka1 99 GMQQIATGDA 108 (268)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHhCCCc
Confidence 9999998753
|
| >d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Polyketide synthase PKS18 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.43 E-value=0.71 Score=36.81 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEec
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAH 139 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h 139 (251)
...++.+++|+++|++|+|||+|...
T Consensus 95 la~~Aa~~aL~~ag~~~~dId~lI~~ 120 (372)
T d1teda_ 95 LAVDVSKRALAGLPYRAAEIGLLVLA 120 (372)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEe
Confidence 45688999999999999999998754
|
| >d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Beta-ketoadipyl CoA thiolase species: Thermus thermophilus [TaxId: 274]
Probab=84.79 E-value=1.5 Score=33.33 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEecCC---CCcCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHHH
Q 040515 113 KGAILAMTRALKQSGLQSHQVDYVNAHAT---STPLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEAI 189 (251)
Q Consensus 113 ~~~~~a~~~al~~Agi~~~dId~i~~h~~---gt~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l~ 189 (251)
+-...+++.+|+++||+|++||.+..--. +.......-..++..-+.. .+|..++ +-.++||+..|.
T Consensus 26 dL~~~a~~~al~~~~i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGlp~-----~vp~~tV-----n~~CaSg~~Ai~ 95 (273)
T d1ulqa1 26 DLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPV-----EVAGCTV-----NRLCGSGLEAVA 95 (273)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTCCT-----TCEEEEE-----ECGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCC-----ccceEEE-----ecccchHHHHHH
Confidence 34567899999999999999998876422 1111222222222211111 1344444 455899999999
Q ss_pred HHHHHHhhCCc
Q 040515 190 FAVLTIHHGVA 200 (251)
Q Consensus 190 ~~~~~l~~~~i 200 (251)
.+..+++.|..
T Consensus 96 ~a~~~I~~G~~ 106 (273)
T d1ulqa1 96 QAARAIWAGEG 106 (273)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHhcCCC
Confidence 99999987764
|
| >d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Chalcone synthase-like domain: Chalcone synthase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=82.62 E-value=2.4 Score=31.39 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEec
Q 040515 114 GAILAMTRALKQSGLQSHQVDYVNAH 139 (251)
Q Consensus 114 ~~~~a~~~al~~Agi~~~dId~i~~h 139 (251)
...++++++|+++|++++|||+|...
T Consensus 105 la~~Aa~~aL~~a~~~~~dId~lI~~ 130 (235)
T d1bi5a1 105 LGKEAAVKAIKEWGQPKSKITHLIVC 130 (235)
T ss_dssp HHHHHHHHHHHHHCSCGGGCCEEEEE
T ss_pred HHHHHHHHHHHHcCCChhHCcEEEEe
Confidence 45688999999999999999998765
|
| >d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thiolase-like superfamily: Thiolase-like family: Thiolase-related domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) species: Pseudomonas fragi [TaxId: 296]
Probab=81.56 E-value=2.1 Score=32.36 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH-cCCCCCCccEEEecCC-CC--cCCcHHHHHHHHHHhhccCCCCceeeecccCCccchhhhhhHHHH
Q 040515 113 KGAILAMTRALKQ-SGLQSHQVDYVNAHAT-ST--PLGDTVEATAIRTVFSDHATSGSLAFSSTKGAIGHLLGAAGAVEA 188 (251)
Q Consensus 113 ~~~~~a~~~al~~-Agi~~~dId~i~~h~~-gt--~~~D~~E~~a~~~~~~~~~~~~~~~v~~~k~~~Gh~~~AsG~~~l 188 (251)
+-...+++++|++ +||+|++||.|..--. .. ......-..+ +.... ...+|..++ +-.++||+..+
T Consensus 32 dL~~~~i~~~l~r~agi~~~~Id~vi~G~v~~~~~~g~n~aR~~a---l~ag~--p~~vp~~tV-----~~~C~Sgl~Ai 101 (262)
T d1wdkc1 32 DMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMAS---LMTQI--PHTSAAQTV-----SRLCGSSMSAL 101 (262)
T ss_dssp HHHHHHHHHHHHHCTTSCGGGEEEEEEECSSBSBTTTTTHHHHHH---TTSSS--CTTSEEEEE-----ECGGGHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHeeEEEEEeecccccccccchhhhH---hhhhc--ccccchhhc-----cccccHHHHHH
Confidence 4566789999997 8999999998765422 21 1122211111 11111 112454444 45589999999
Q ss_pred HHHHHHHhhCCc
Q 040515 189 IFAVLTIHHGVA 200 (251)
Q Consensus 189 ~~~~~~l~~~~i 200 (251)
..+..+++-|..
T Consensus 102 ~~aa~~I~sG~~ 113 (262)
T d1wdkc1 102 HTAAQAIMTGNG 113 (262)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHhhcC
Confidence 999999997654
|