Citrus Sinensis ID: 040559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MDDIEPPFEKTYPTLFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL
ccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEccccHHHHcccccccccccEEccccccEEEEEEEEccccccEEEcccccccccccccccHHHHHHHHHHHHHccccccccccccc
ccccccccHccccHHcccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEEEEccccccEEEccHHHHccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEcccHHHccccccccccHHHHHHHHHHHHHHHHccccccEEcc
mddieppfektyptlfhnstakanderlvavdeecqlpsidlARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLsadsyrwgnpkatCLKQFLWsealhipvtdisrlgdesnnprstigLFSTKAANLAERLAEYLARNLkikssyfrenclpgssylrmnryppcppsfevlgliphtdsdfLTILYQDHvgglqlkkdgrwlsvkpnpdvlIVNVGDLFQALsngvyksvehrvvshpkverysvayfycpsYEAVIESTENIiepaiyrkfsfREYKQQIQEDVRATgnkvglsrfll
mddieppfektyptlfhnstAKANDERLVAVDEEcqlpsidlaRLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQpfrkkseqNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTdisrlgdesnnPRSTIGLFSTKAANLAERLAEYLARnlkikssyfreNCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEhrvvshpkverysVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEdvratgnkvglsrfll
MDDIEPPFEKTYPTLFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL
*************************ERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVL*********IF***********FMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRL*********TIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQE****************
*****PPFEKTYPTLFHN***************ECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRK**************RWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL
MDDIEPPFEKTYPTLFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL
*****PPFEKTYPTLFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDDIEPPFEKTYPTLFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
O49561338 Gibberellin 2-beta-dioxyg yes no 0.969 0.955 0.547 1e-101
Q9C6I4336 Gibberellin 2-beta-dioxyg no no 0.978 0.970 0.452 8e-83
A2Z1W9322 1-aminocyclopropane-1-car N/A no 0.813 0.841 0.327 1e-38
Q0J1C1322 1-aminocyclopropane-1-car no no 0.813 0.841 0.327 2e-38
Q08507320 1-aminocyclopropane-1-car N/A no 0.801 0.834 0.336 3e-38
O04706365 Gibberellin 20 oxidase 1- N/A no 0.861 0.786 0.316 5e-38
Q41931320 1-aminocyclopropane-1-car no no 0.825 0.859 0.314 5e-38
Q9MB94319 1-aminocyclopropane-1-car N/A no 0.807 0.843 0.322 8e-38
P31237319 1-aminocyclopropane-1-car N/A no 0.807 0.843 0.305 9e-38
Q08506319 1-aminocyclopropane-1-car N/A no 0.804 0.840 0.335 9e-38
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function desciption
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/340 (54%), Positives = 239/340 (70%), Gaps = 17/340 (5%)

Query: 4   IEPPFEKTYPTLFHNSTAKANDE--------RLVAVDEECQLPSIDLARL---NFRSFDK 52
           ++PPF + Y  L +N   K +++         + AV EE +LP ID++RL        +K
Sbjct: 1   MDPPFNEIYNNLLYNQITKKDNDVSEIPFSFSVTAVVEEVELPVIDVSRLIDGAEEEREK 60

Query: 53  WIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRW 112
             E +A A+ +WGFFQV+NHGI   VLE MR+EQ+++F +PF KKS+      SA SYRW
Sbjct: 61  CKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSE--KFSAGSYRW 118

Query: 113 GNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNL 172
           G P AT ++Q  WSEA H+P+TDIS   D +    ST+  F++++  LA  LAE LA   
Sbjct: 119 GTPSATSIRQLSWSEAFHVPMTDISDNKDFTT-LSSTMEKFASESEALAYMLAEVLAEKS 177

Query: 173 KIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKD 232
              SS+F+ENC+  + YLRMNRYPPCP   EV GL+PHTDSDFLTILYQD VGGLQL KD
Sbjct: 178 GQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKD 237

Query: 233 GRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIE 292
            RW++VKPNP  LI+N+GDLFQA SNG+YKSVEHRV+++PKVER+S AYF CPSY+AVIE
Sbjct: 238 NRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVIE 297

Query: 293 STENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFL 332
            + +   PA YR FSFRE++QQ+QEDV+  G KVGL RFL
Sbjct: 298 CSSD--RPA-YRNFSFREFRQQVQEDVKKFGFKVGLPRFL 334
Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs. Hydroxylates the C20-GA GA12 and GA53, but is not active on C19-GAs, like GA1, GA4, GA9 and GA20.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9C6I4|G2OX7_ARATH Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1 Back     alignment and function description
>sp|A2Z1W9|ACCO1_ORYSI 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q0J1C1|ACCO1_ORYSJ 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q08507|ACCO3_PETHY 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|Q41931|ACCO2_ARATH 1-aminocyclopropane-1-carboxylate oxidase 2 OS=Arabidopsis thaliana GN=ACO2 PE=1 SV=2 Back     alignment and function description
>sp|Q9MB94|ACCO_PRUMU 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|P31237|ACCO_ACTDE 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1 Back     alignment and function description
>sp|Q08506|ACCO1_PETHY 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
255563687329 gibberellin 20-oxidase, putative [Ricinu 0.978 0.990 0.621 1e-118
255563683327 gibberellin 20-oxidase, putative [Ricinu 0.963 0.981 0.604 1e-115
225444393344 PREDICTED: gibberellin 2-beta-dioxygenas 0.981 0.950 0.574 1e-114
302144063421 unnamed protein product [Vitis vinifera] 0.981 0.776 0.574 1e-113
357480747332 Gibberellin 2-beta-dioxygenase [Medicago 0.963 0.966 0.581 1e-109
356513995326 PREDICTED: gibberellin 2-beta-dioxygenas 0.969 0.990 0.588 1e-107
356540301339 PREDICTED: gibberellin 2-beta-dioxygenas 0.963 0.946 0.573 1e-107
255555001331 gibberellin 20-oxidase, putative [Ricinu 0.978 0.984 0.564 1e-107
356565651328 PREDICTED: gibberellin 2-beta-dioxygenas 0.978 0.993 0.581 1e-107
225461094329 PREDICTED: gibberellin 2-beta-dioxygenas 0.966 0.978 0.537 1e-102
>gi|255563687|ref|XP_002522845.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223537929|gb|EEF39543.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/333 (62%), Positives = 258/333 (77%), Gaps = 7/333 (2%)

Query: 3   DIEPPFEKTYPTLFHNSTAKANDERLVAVDEECQLPSIDLARLNFRSFD--KWIEEMAEA 60
           DI+PPF++ +  LF NS  +  +E ++   + C+LP ID+  LN    D  K I+EM EA
Sbjct: 2   DIDPPFQEKHRALFKNSIVRETNEDMLMASQ-CELPLIDMNSLNVGHPDREKCIKEMGEA 60

Query: 61  ASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNPKATCL 120
           AS+WGFFQV+NHGIP ++LE ++ EQM +FH+PF KKS+  F+NL A+SY WGN KATCL
Sbjct: 61  ASEWGFFQVVNHGIPNEILERLQYEQMMVFHEPFSKKSQDRFLNLPANSYIWGNSKATCL 120

Query: 121 KQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFR 180
            QF WSEA HIPVTDIS + D   N  STI  F   AA+LAE LAE LA N+ +K+++F+
Sbjct: 121 SQFSWSEAFHIPVTDISTM-DGVRNLGSTIEAFVNLAASLAESLAETLADNIGVKTNFFK 179

Query: 181 ENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKDGRWLSVKP 240
           ENC   SSY+RMNRYPPCP S +V GL+PHTDS+FLTILYQD  GGL+L KDG WLSV+P
Sbjct: 180 ENCTTSSSYVRMNRYPPCPFSSQVYGLLPHTDSNFLTILYQDQNGGLELLKDGNWLSVRP 239

Query: 241 NPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIESTENIIEP 300
           NP+ L++N+GD FQA SN +Y+S EHRVV+  KVER+S+A+FYCPSYEAVIES    I+P
Sbjct: 240 NPEALVINIGDFFQAFSNNIYRSTEHRVVAPQKVERFSMAFFYCPSYEAVIES---YIKP 296

Query: 301 AIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL 333
           A YRKFSFREYKQQIQ+DV+ATGNK+GLSRFLL
Sbjct: 297 AKYRKFSFREYKQQIQKDVQATGNKIGLSRFLL 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255563683|ref|XP_002522843.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223537927|gb|EEF39541.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225444393|ref|XP_002268173.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144063|emb|CBI23168.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357480747|ref|XP_003610659.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] gi|355511994|gb|AES93617.1| Gibberellin 2-beta-dioxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356513995|ref|XP_003525693.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|356540301|ref|XP_003538628.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|255555001|ref|XP_002518538.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223542383|gb|EEF43925.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356565651|ref|XP_003551052.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|225461094|ref|XP_002279303.1| PREDICTED: gibberellin 2-beta-dioxygenase 8 [Vitis vinifera] gi|147806297|emb|CAN72091.1| hypothetical protein VITISV_008387 [Vitis vinifera] gi|297735958|emb|CBI23932.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2127403338 GA2OX8 "gibberellin 2-oxidase 0.969 0.955 0.555 9e-93
TAIR|locus:2036386336 GA2OX7 "gibberellin 2-oxidase 0.975 0.967 0.456 1.9e-76
TAIR|locus:2178783352 AT5G58660 [Arabidopsis thalian 0.498 0.471 0.387 4e-39
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.822 0.769 0.331 1.6e-38
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.819 0.75 0.349 2.1e-38
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.903 0.840 0.317 4.3e-38
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.816 0.733 0.348 5.5e-38
TAIR|locus:2027099320 ACO2 "ACC oxidase 2" [Arabidop 0.825 0.859 0.321 7e-38
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.891 0.841 0.327 4.9e-37
TAIR|locus:2086789361 AT3G13610 [Arabidopsis thalian 0.846 0.781 0.333 1.3e-36
TAIR|locus:2127403 GA2OX8 "gibberellin 2-oxidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
 Identities = 189/340 (55%), Positives = 239/340 (70%)

Query:     4 IEPPFEKTYPTLFHNS-TAKANDER-------LVAVDEECQLPSIDLARL---NFRSFDK 52
             ++PPF + Y  L +N  T K ND         + AV EE +LP ID++RL        +K
Sbjct:     1 MDPPFNEIYNNLLYNQITKKDNDVSEIPFSFSVTAVVEEVELPVIDVSRLIDGAEEEREK 60

Query:    53 WIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRW 112
               E +A A+ +WGFFQV+NHGI   VLE MR+EQ+++F +PF KKS+      SA SYRW
Sbjct:    61 CKEAIARASREWGFFQVINHGISMDVLEKMRQEQIRVFREPFDKKSKSE--KFSAGSYRW 118

Query:   113 GNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNL 172
             G P AT ++Q  WSEA H+P+TDIS   D +    ST+  F++++  LA  LAE LA   
Sbjct:   119 GTPSATSIRQLSWSEAFHVPMTDISDNKDFTTLS-STMEKFASESEALAYMLAEVLAEKS 177

Query:   173 KIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLKKD 232
                SS+F+ENC+  + YLRMNRYPPCP   EV GL+PHTDSDFLTILYQD VGGLQL KD
Sbjct:   178 GQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKD 237

Query:   233 GRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHPKVERYSVAYFYCPSYEAVIE 292
              RW++VKPNP  LI+N+GDLFQA SNG+YKSVEHRV+++PKVER+S AYF CPSY+AVIE
Sbjct:   238 NRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVIE 297

Query:   293 STENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFL 332
              + +   PA YR FSFRE++QQ+QEDV+  G KVGL RFL
Sbjct:   298 CSSD--RPA-YRNFSFREFRQQVQEDVKKFGFKVGLPRFL 334
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009685 "gibberellin metabolic process" evidence=IDA
GO:0052634 "C-19 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0052635 "C-20 gibberellin 2-beta-dioxygenase activity" evidence=IDA
TAIR|locus:2036386 GA2OX7 "gibberellin 2-oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178783 AT5G58660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027099 ACO2 "ACC oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086789 AT3G13610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49561G2OX8_ARATH1, ., 1, 4, ., 1, 1, ., 1, 30.54700.96990.9556yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
3rd Layer1.14.11.130.946
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 5e-62
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-53
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-52
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-51
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 4e-49
PLN02216357 PLN02216, PLN02216, protein SRG1 7e-49
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-48
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-48
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-47
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 4e-45
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 8e-43
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-42
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-39
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 5e-38
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-37
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 9e-37
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 6e-33
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-31
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 6e-29
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-28
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 6e-28
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-26
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 2e-23
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-19
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-18
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-16
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 6e-12
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  200 bits (510), Expect = 5e-62
 Identities = 114/354 (32%), Positives = 177/354 (50%), Gaps = 51/354 (14%)

Query: 10  KTYPTLFH--------NSTAKANDERLVAVDEECQLPSIDLARLNFRSFDKWIEEMAEAA 61
           ++YP  F          +  +     L    ++  +P ID+  L+       +E++ EA 
Sbjct: 5   ESYPPEFRPLMSEIHGPAEGEEGTPVLDRS-KDIDIPVIDMECLD-------MEKLREAC 56

Query: 62  SQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWG----NPKA 117
             WG F++ NHGIP  ++  +++    +   PF  K E  F   S  SY WG     P  
Sbjct: 57  KDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKREL-FGVNSPLSYFWGTPALTPSG 115

Query: 118 TCLKQ------FLWSEALHIPVTDISRLGDES-NNP-----RSTIGLFSTKAANLAERLA 165
             L +        W E  +IP++ +S L   S ++P     R  +  +      +A  L 
Sbjct: 116 KALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLF 175

Query: 166 EYLARNL------KIKSSYFRENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTIL 219
           E +A+ L        K SY  E+    +  +R+ RYP C    E  G+  HTDS  ++IL
Sbjct: 176 EAIAKTLSLELSGDQKMSYLSES----TGVIRVYRYPQCSNEAEAPGMEVHTDSSVISIL 231

Query: 220 YQDHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVS-HPKVERYS 278
            QD VGGL++ KDG W +VKP  + L+VN+GD+ Q +S+  YKSV HRV   + K ERYS
Sbjct: 232 NQDEVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKRNKKKERYS 291

Query: 279 VAYFYCPSYEAVIESTENIIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFL 332
           + YF  P  + VI+S++       Y+ F++ +++ Q+Q DV+  G+KVGLSRF 
Sbjct: 292 ICYFVFPEEDCVIKSSK-------YKPFTYSDFEAQVQLDVKTLGSKVGLSRFK 338

Length = 341
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
PLN02216357 protein SRG1 100.0
PLN02947374 oxidoreductase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02997325 flavonol synthase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02704335 flavonol synthase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.84
PLN03176120 flavanone-3-hydroxylase; Provisional 99.75
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.78
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.8
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.14
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.76
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 90.91
TIGR02466201 conserved hypothetical protein. This family consis 81.65
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.9e-73  Score=540.40  Aligned_cols=295  Identities=32%  Similarity=0.537  Sum_probs=253.0

Q ss_pred             CCCceEeCCCCCCC-CHHHHHHHHHHHhHccceEEEEcCCCCHHHHHHHHHHHHHhcCCChhhhhhhccccCCCCccccC
Q 040559           35 CQLPSIDLARLNFR-SFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWG  113 (333)
Q Consensus        35 ~~iPvIDls~l~~~-~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~g  113 (333)
                      .+||+|||+.+.++ .+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++..  ......|||
T Consensus        51 ~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~--~~~~~~Gy~  128 (357)
T PLN02216         51 SEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQ--RPGEIEGFG  128 (357)
T ss_pred             CCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhc--CCCCccccC
Confidence            57999999998654 345689999999999999999999999999999999999999999999999732  122223454


Q ss_pred             CCCcc-cccccccccccCCCCCC--CCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhccCC-C
Q 040559          114 NPKAT-CLKQFLWSEALHIPVTD--ISRLGDE---SNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENCLP-G  186 (333)
Q Consensus       114 ~~~~~-~~~~~d~~E~~~~~~~~--~~~~~~~---P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~  186 (333)
                      ..... .....||+|.|.+...+  ...++.|   |+.||+++++|+++|.+|+.+||++||++||+++++|.+.+.. .
T Consensus       129 ~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~  208 (357)
T PLN02216        129 QAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDL  208 (357)
T ss_pred             ccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCc
Confidence            43321 23457999998765322  1223334   4689999999999999999999999999999999999988876 3


Q ss_pred             ceeeEEeecCCCCCCCCcccccccccCCeeEEEEe-CCCCceeeccCCceEEecCCCCceEEechhhHHHhhCCcccCcc
Q 040559          187 SSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQ-DHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVE  265 (333)
Q Consensus       187 ~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q-d~~~GLqV~~~g~W~~V~p~pg~lvVniGd~l~~~TnG~~~s~~  265 (333)
                      .+.||++|||||+.++..+|+++|||+|+||||+| ++++||||+++|+|++|+|+||++||||||+||+||||+|||++
T Consensus       209 ~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~  288 (357)
T PLN02216        209 GQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIE  288 (357)
T ss_pred             hheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccC
Confidence            56899999999998888899999999999999999 57999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCceEEEEEeecCCCCceEecCCC---CCCCCcccccCHHHHHHHHHHHHHhcCCccccccccC
Q 040559          266 HRVVSHPKVERYSVAYFYCPSYEAVIESTEN---IIEPAIYRKFSFREYKQQIQEDVRATGNKVGLSRFLL  333 (333)
Q Consensus       266 HRV~~~~~~~R~Si~~F~~P~~d~~i~p~~~---~~~~~~y~~~t~~ey~~~~~~~~~~~~~~~~~~~~~~  333 (333)
                      |||+.++.++|||++||++|+.|++|+|+++   .++|++|++++++||++.++.  +....+..++.|+|
T Consensus       289 HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~--~~~~~~~~~~~~~~  357 (357)
T PLN02216        289 HRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFS--RELDGKAYLDAMRI  357 (357)
T ss_pred             ceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHh--cccCCcchhhhhcC
Confidence            9999888889999999999999999999864   468999999999999988876  34446778888876

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-37
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-22
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-22
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 6e-21
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 6e-19
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 6e-11
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 3e-06
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 3e-06
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 145/291 (49%), Gaps = 21/291 (7%)
Query: 37  LPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRK 96
            P I L ++N        E + +A   WGFF+++NHGIP++V +++ K         ++K
Sbjct: 4   FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXT----KGHYKK 59
Query: 97  KSEQNFMNLSADSYRWGNPKATCLKQFLWSEAL---HIPVTDISRLGDESNNPRSTIGLF 153
             EQ F  L A     G           W       H+P+++IS + D     R     F
Sbjct: 60  CXEQRFKELVASKALEGVQAEVTDXD--WESTFFLKHLPISNISEVPDLDEEYREVXRDF 117
Query: 154 STKAANLAERLAEYLARNLKIKSSYFRENCLPGSSY----LRMNRYPPCPPSFEVLGLIP 209
           + +   LAE L + L  NL ++  Y + N   GS       +++ YPPCP    + GL  
Sbjct: 118 AKRLEKLAEELLDLLCENLGLEKGYLK-NAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176
Query: 210 HTDSDFLTILYQD-HVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRV 268
           HTD+  + +L+QD  V GLQL KDG+W+ V P    ++VN+GD  + ++NG YKSV HRV
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRV 236
Query: 269 VSHPKVERYSVAYFYCPSYEAVIESTENIIE------PAIYRKFSFREYKQ 313
           ++     R S+A FY P  +AVI     ++E        +Y KF F +Y +
Sbjct: 237 IAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-93
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-87
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-73
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 2e-70
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-67
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-65
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  279 bits (717), Expect = 2e-93
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 21/290 (7%)

Query: 36  QLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFR 95
             P I L ++N       +E + +A   WGFF+++NHGIP++V++++ K     + +   
Sbjct: 3   NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCM- 61

Query: 96  KKSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHI---PVTDISRLGDESNNPRSTIGL 152
              EQ F  L A     G      +    W     +   P+++IS + D     R  +  
Sbjct: 62  ---EQRFKELVASKALEGV--QAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRD 116

Query: 153 FSTKAANLAERLAEYLARNLKIKSSYFRENCLPG---SSYLRMNRYPPCP-PSFEVLGLI 208
           F+ +   LAE L + L  NL ++  Y +         +   +++ YPPCP P   + GL 
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL-IKGLR 175

Query: 209 PHTDSDFLTILYQD-HVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHR 267
            HTD+  + +L+QD  V GLQL KDG+W+ V P    ++VN+GD  + ++NG YKSV HR
Sbjct: 176 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHR 235

Query: 268 VVSHPKVERYSVAYFYCPSYEAVIESTENIIE------PAIYRKFSFREY 311
           V++     R S+A FY P  +AVI     ++E        +Y KF F +Y
Sbjct: 236 VIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.16
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.33
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.16
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 90.28
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 89.35
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 83.63
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 81.88
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 80.18
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=2.4e-73  Score=531.51  Aligned_cols=283  Identities=22%  Similarity=0.402  Sum_probs=244.1

Q ss_pred             CCCCceEeCCCCCCCCHHHHHHHHHHHhHccceEEEEcCCCCHHHHHHHHHHHHHhcCCChhhhhhhccccCCCCcccc-
Q 040559           34 ECQLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRW-  112 (333)
Q Consensus        34 ~~~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~-  112 (333)
                      ..+||||||+.+.+ ++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++...  .....|| 
T Consensus         4 ~~~iPvIDls~~~~-~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~--~~~~~Gy~   80 (312)
T 3oox_A            4 TSAIDPVSFSLYAK-DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV--KGGARGYI   80 (312)
T ss_dssp             CCSSCCEETHHHHH-CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSS--GGGTSEEE
T ss_pred             CCCCCeEEChHhcc-cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccC--CCCccccc
Confidence            46899999998754 6788899999999999999999999999999999999999999999999997321  1122233 


Q ss_pred             --CCCCcccccccccccccCCCCCCC--------CCCCCCC---CChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCchhh
Q 040559          113 --GNPKATCLKQFLWSEALHIPVTDI--------SRLGDES---NNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYF  179 (333)
Q Consensus       113 --g~~~~~~~~~~d~~E~~~~~~~~~--------~~~~~~P---~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f  179 (333)
                        |.+........||+|.|+++....        ..++.||   ++||+++++|+++|.+|+.+||++|+++||+++++|
T Consensus        81 ~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f  160 (312)
T 3oox_A           81 PFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFF  160 (312)
T ss_dssp             CCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTT
T ss_pred             cccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence              333222334589999998754211        1234555   789999999999999999999999999999999999


Q ss_pred             hhccCCCceeeEEeecCCCCCCCCcccccccccCCeeEEEEeCCCCceeec-cCCceEEecCCCCceEEechhhHHHhhC
Q 040559          180 RENCLPGSSYLRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQDHVGGLQLK-KDGRWLSVKPNPDVLIVNVGDLFQALSN  258 (333)
Q Consensus       180 ~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~-~~g~W~~V~p~pg~lvVniGd~l~~~Tn  258 (333)
                      .+.+..+.+.+|++||||++.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+|+||++||||||+||+|||
T Consensus       161 ~~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~Tn  240 (312)
T 3oox_A          161 KPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDMLERLTN  240 (312)
T ss_dssp             HHHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTSCEEECCCCSSCEEEEECHHHHHHTT
T ss_pred             HHHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCCcEEECCCCCCeEEEEhHHHHHHHhC
Confidence            999988888999999999987655599999999999999999999999997 8899999999999999999999999999


Q ss_pred             CcccCccceeecCC----CCceEEEEEeecCCCCceEecCCC---CCCCCccc-ccCHHHHHHHHHHHH
Q 040559          259 GVYKSVEHRVVSHP----KVERYSVAYFYCPSYEAVIESTEN---IIEPAIYR-KFSFREYKQQIQEDV  319 (333)
Q Consensus       259 G~~~s~~HRV~~~~----~~~R~Si~~F~~P~~d~~i~p~~~---~~~~~~y~-~~t~~ey~~~~~~~~  319 (333)
                      |+||||.|||+.++    +.+|||++||++|+.|++|+|+++   .++|++|+ ++|++||++.+++++
T Consensus       241 G~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~  309 (312)
T 3oox_A          241 NVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREI  309 (312)
T ss_dssp             TSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHH
T ss_pred             CeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHh
Confidence            99999999999874    467999999999999999999875   46899999 999999999988754
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-54
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 6e-53
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 9e-46
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-36
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  178 bits (452), Expect = 2e-54
 Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 13/287 (4%)

Query: 37  LPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRK 96
            P I L ++N       +E + +A   WGFF+++NHGIP++V++++ K     + +   +
Sbjct: 3   FPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQ 62

Query: 97  KSEQNFMNLSADSYRWGNPKATCLKQFLWSEALHIPVTDISRLGDESNNPRSTIGLFSTK 156
           + ++     ++ +      + T +         H+P+++IS + D     R  +  F+ +
Sbjct: 63  RFKELV---ASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKR 119

Query: 157 AANLAERLAEYLARNLKIKSSYFRENCLP---GSSYLRMNRYPPCPPSFEVLGLIPHTDS 213
              LAE L + L  NL ++  Y +         +   +++ YPPCP    + GL  HTD+
Sbjct: 120 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDA 179

Query: 214 DFLTILYQ-DHVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRVVSHP 272
             + +L+Q D V GLQL KDG+W+ V P    ++VN+GD  + ++NG YKSV HRV++  
Sbjct: 180 GGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQK 239

Query: 273 KVERYSVAYFYCPSYEAVIESTENIIE------PAIYRKFSFREYKQ 313
              R S+A FY P  +AVI     ++E        +Y KF F +Y +
Sbjct: 240 DGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMK 286
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.06
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 80.2
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=2.5e-70  Score=508.44  Aligned_cols=276  Identities=30%  Similarity=0.538  Sum_probs=237.9

Q ss_pred             CCceEeCCCCCCCCHHHHHHHHHHHhHccceEEEEcCCCCHHHHHHHHHHHHHhcCCChhhhhhhccccCCCCccccCCC
Q 040559           36 QLPSIDLARLNFRSFDKWIEEMAEAASQWGFFQVMNHGIPQKVLESMRKEQMKIFHQPFRKKSEQNFMNLSADSYRWGNP  115 (333)
Q Consensus        36 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~~~~g~~  115 (333)
                      +||||||+.+.+.++++++++|++||+++|||||+||||+.++++++++++++||++|.|+|+++...  ..+..+|+. 
T Consensus         2 ~lPvIDl~~~~~~~r~~~~~~l~~A~~~~GFF~l~nHGI~~~li~~~~~~~~~fF~lp~e~K~k~~~~--~~~~~g~~~-   78 (307)
T d1w9ya1           2 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVA--SKALEGVQA-   78 (307)
T ss_dssp             CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCC-
T ss_pred             CCCeEECcccCCcCHHHHHHHHHHHHHcCeEEEEEcCCCCHHHHHHHHHHHHHHHhCcHHHhhhhhcC--CCCCcCccc-
Confidence            79999999997778999999999999999999999999999999999999999999999999986221  111122222 


Q ss_pred             CcccccccccccccCCCCCCC---CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhcc---CCCcee
Q 040559          116 KATCLKQFLWSEALHIPVTDI---SRLGDESNNPRSTIGLFSTKAANLAERLAEYLARNLKIKSSYFRENC---LPGSSY  189 (333)
Q Consensus       116 ~~~~~~~~d~~E~~~~~~~~~---~~~~~~P~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~---~~~~~~  189 (333)
                         .....||+|.|.+.....   ..+++.|++||+.+++|++.|.+|+.+|+++|+++||+++++|.+.+   ....+.
T Consensus        79 ---~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~  155 (307)
T d1w9ya1          79 ---EVTDMDWESTFFLKHLPISNISEVPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFG  155 (307)
T ss_dssp             ---CGGGCCCCEEEEEEEESCCGGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHTTTCCEEE
T ss_pred             ---cccccChhhhcccccccccCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhcccccccc
Confidence               123478999887643322   23344568999999999999999999999999999999999998876   344678


Q ss_pred             eEEeecCCCCCCCCcccccccccCCeeEEEEeC-CCCceeeccCCceEEecCCCCceEEechhhHHHhhCCcccCcccee
Q 040559          190 LRMNRYPPCPPSFEVLGLIPHTDSDFLTILYQD-HVGGLQLKKDGRWLSVKPNPDVLIVNVGDLFQALSNGVYKSVEHRV  268 (333)
Q Consensus       190 lr~~~Yp~~~~~~~~~g~~~HtD~g~lTlL~qd-~~~GLqV~~~g~W~~V~p~pg~lvVniGd~l~~~TnG~~~s~~HRV  268 (333)
                      +|++||||++.++...|+++|||+|+||||+|+ .++||||.++|+|++|+|.||++|||+||+||+||||+||||.|||
T Consensus       156 lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRV  235 (307)
T d1w9ya1         156 TKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRV  235 (307)
T ss_dssp             EEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEE
T ss_pred             ceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCCcEEEeccCCCeEEEEcchhhHHhhCCcccCcCcee
Confidence            999999999988888999999999999999996 5899999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceEEEEEeecCCCCceEecCCC------CCCCCcccccCHHHHHHHHHH
Q 040559          269 VSHPKVERYSVAYFYCPSYEAVIESTEN------IIEPAIYRKFSFREYKQQIQE  317 (333)
Q Consensus       269 ~~~~~~~R~Si~~F~~P~~d~~i~p~~~------~~~~~~y~~~t~~ey~~~~~~  317 (333)
                      +.+++.+||||+||++|+.|++|+|+++      .++|++|+|||++||++.+.+
T Consensus       236 v~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~  290 (307)
T d1w9ya1         236 IAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG  290 (307)
T ss_dssp             CCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTT
T ss_pred             ecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHh
Confidence            9998889999999999999999999874      357899999999999976543
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure