Citrus Sinensis ID: 040567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEEccccccEEEEcccccccccccEEEEEEEEEcccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEEcccccccEEEEEEEEEEccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
vvnpnegyplpdthkltvkvtspygnsyhqgdhvesgnfaftaaeagdytacfwspehnppatvtvefewktgvvskdwtKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Flexible Loop (DISEMBL)
vvnpnegyplpdthKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEfewktgvvskdwtKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Low Complexity Region (SEG)
VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHeemfylrereeemQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Disordered region (IsUnstruct)
*****************VKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLR****************MASLGFISLVVCLSVAALQIWHLKTFFE*****
Disordered Region (DISOPRED)
VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQ**H*ESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSK*************MELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Disordered Region (DISEMBL)
VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Disordered Region (DISPRO)
VV**NEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKL*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9LQY3	214	Transmembrane emp24 domai	yes	no	1.0	0.757	0.611	5e-60
Q8GYG1	212	Transmembrane emp24 domai	no	no	1.0	0.764	0.604	2e-59
O81045	213	Transmembrane emp24 domai	no	no	1.0	0.760	0.650	5e-59
Q8VY92	214	Transmembrane emp24 domai	no	no	0.987	0.747	0.6	2e-56
Q9LJV9	225	Transmembrane emp24 domai	no	no	1.0	0.72	0.598	1e-55
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.907	0.677	0.452	8e-37
Q8RWM6	216	Transmembrane emp24 domai	no	no	0.932	0.699	0.453	2e-34
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.907	0.693	0.432	2e-32
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.907	0.677	0.390	4e-27
O35587	219	Transmembrane protein Tmp	N/A	no	0.895	0.662	0.303	1e-16

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  229 bits (584), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 132/162 (81%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           VVNPNE +P P +HK++++VTS YGN+YH  + VESG FAFTA E+GDY AC+ + +H P
Sbjct: 53  VVNPNEAHPSPQSHKISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKP 112

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
             T++++F+W+TGV SK W+ VAKK QV++ME ++K+L +TV+SIHEEMFYLREREEEMQ
Sbjct: 113 EVTLSIDFDWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQ 172

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
            LN+ TNS+MA L F+SL VCL VA +Q  HLKTFFE+KK++
Sbjct: 173 NLNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 130/162 (80%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           ++NP+E +PLP +HK+TV+VTSP G +YH+ D VESG F+F A E GDY +CF + +H P
Sbjct: 51  IINPHEDHPLPSSHKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKP 110

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
             T+ ++F+W+TG+ +KDW+ VAKK QV+ ME E+KKLF+TV+ IH+EMFYLR+REEEM 
Sbjct: 111 ETTLIIDFDWRTGIHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMH 170

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
            LN  TNS+MA L F+SL VCLSVA LQ WHLKTFF++KKL+
Sbjct: 171 NLNIATNSKMAWLSFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  226 bits (576), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/163 (65%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 1   VVNPNE-GYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN 59
           +VNPNE  +PLPD+HK+ VKV  P G + H+ D VE+G F+FTA E G Y AC  + ++ 
Sbjct: 51  IVNPNEDNHPLPDSHKIIVKVMPPQGKNLHEADKVEAGQFSFTAYENGSYVACITAIDYK 110

Query: 60  PPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEM 119
           P  T+T++F+WKTGV SK+WT VAKK QVDMME ++K L DTV SIHEEM+YLREREEEM
Sbjct: 111 PETTLTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEM 170

Query: 120 QELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           QELN++TNS+MA L F SLVVCLSVA LQ WHLKTFFE+KKL+
Sbjct: 171 QELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKTFFEKKKLI 213

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 127/160 (79%)

Query: 3   NPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPA 62
           NP+EG  LP THK++VKVTS  GN+YH  + V+SG FAF+A EAGDY ACF + +H P  
Sbjct: 55  NPHEGQALPQTHKISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEV 114

Query: 63  TVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQEL 122
           +++++FEWKTGV SK W  VAKK QV++ME E+K L DTV+SIHEEM+YLR+REEEMQ+L
Sbjct: 115 SLSIDFEWKTGVQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDL 174

Query: 123 NKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           N++TN++MA L  +S  VC+ VA +Q  HLKTFFE+KK++
Sbjct: 175 NRSTNTKMAWLSVLSFFVCIGVAGMQFLHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score =  214 bits (546), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 124/162 (76%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           +VNPNEG+ LP +HKL V V+SP G S+H  ++VESG F FTA E GDY  CF +P + P
Sbjct: 64  IVNPNEGHHLPPSHKLFVTVSSPKGKSHHHAENVESGKFVFTAEETGDYMTCFVAPGYRP 123

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
            A   V+FEWK+GV +KDWT +AK+GQ+ M+E+E++KL D   +IHEEMF L ERE EMQ
Sbjct: 124 TAKFAVDFEWKSGVEAKDWTTIAKRGQITMLEVEVRKLLDVTETIHEEMFQLIEREREMQ 183

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           ELN++TNSRMA+L  +S VV +SVA LQ+ HLK+F ERKKLL
Sbjct: 184 ELNRSTNSRMAALSLLSFVVTMSVAGLQLRHLKSFLERKKLL 225

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  152 bits (384), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 16  LTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN-PPATVTVEFEWKTGV 74
           ++VKVTSPYGN+ H  ++V  G FAFT  E+G+Y ACFW+ E +     V++  +W+TG+
Sbjct: 70  ISVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGI 129

Query: 75  VSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLG 134
            +KDW  +AKK +++ +ELE++KL   V +IHE + YLR RE +M+ +++ TNSR+A   
Sbjct: 130 AAKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYS 189

Query: 135 FISLVVCLSVAALQIWHLKTFFERKKLL 162
            +SL VC++V+  Q+ +LK +FE+KKL+
Sbjct: 190 IMSLGVCIAVSGFQVLYLKQYFEKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 104/152 (68%), Gaps = 1/152 (0%)

Query: 12  DTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFW-SPEHNPPATVTVEFEW 70
           +T  ++ KVTSPYGN+ H  ++V  G FAFT  EAG+Y ACFW    H+    +T+  +W
Sbjct: 65  NTPAVSSKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDW 124

Query: 71  KTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRM 130
           K G+ +KDW  VAKK +++ +EL+L++L   V SI E + Y+++RE EM+E+++TTNSR+
Sbjct: 125 KMGIAAKDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRV 184

Query: 131 ASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           A    +SL VC+ V   QI +LK +F +KKL+
Sbjct: 185 AWFSIMSLGVCVVVVGSQILYLKRYFHKKKLI 216

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 16  LTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWS-PEHNPPATVTVEFEWKTGV 74
           ++VKVT+PYG   H  ++  +G FAFT  E+G Y ACF +  + +     ++  +WKTG+
Sbjct: 65  VSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGI 124

Query: 75  VSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLG 134
            +KDW  +A+K +++ +ELE KKL   V +IHE + YLR RE EM+ +++ TNSR+A   
Sbjct: 125 AAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYS 184

Query: 135 FISLVVCLSVAALQIWHLKTFFERKKLL 162
            +SL +C+ V+ LQI +LK +FE+KKL+
Sbjct: 185 IMSLGICIVVSGLQILYLKQYFEKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 4/151 (2%)

Query: 16  LTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFW----SPEHNPPATVTVEFEWK 71
           L V+VTSPYG   ++  +V  G  AFT +E+G + AC         H+  ++V V  +WK
Sbjct: 67  LDVRVTSPYGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWK 126

Query: 72  TGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMA 131
            G+ +KDW  VAKK +++ +ELE+++  +  S+I   + YLR RE  M+E+N+ TN+R+ 
Sbjct: 127 MGIRAKDWDSVAKKEKIEGVELEIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVN 186

Query: 132 SLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
            LG +SL V + V+  Q+ +LK +F +KKL+
Sbjct: 187 QLGLMSLGVAIVVSISQVLYLKRYFLKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O35587|TMEDA_MESAU Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 83/145 (57%)

Query: 18  VKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSK 77
           +K+T   G+  +  +    G FAFT  +   +  CF S          V  + K GV +K
Sbjct: 74  LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAK 133

Query: 78  DWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFIS 137
           ++ ++AK  ++  +E+EL++L D   SI  +  Y+++REEEM++ N++TN+R+      S
Sbjct: 134 NYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFS 193

Query: 138 LVVCLSVAALQIWHLKTFFERKKLL 162
           ++  + +A  Q+++L+ FF+ KKL+
Sbjct: 194 MLCLIGLATWQVFYLRRFFKAKKLI 218

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Mesocricetus auratus (taxid: 10036)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
225452883	210	PREDICTED: transmembrane emp24 domain-co	1.0	0.771	0.783	7e-78
296082949	169	unnamed protein product [Vitis vinifera]	1.0	0.958	0.783	2e-77
359488943	217	PREDICTED: transmembrane emp24 domain-co	1.0	0.746	0.751	1e-75
255578274	190	Transmembrane protein Tmp21 precursor, p	1.0	0.852	0.777	4e-75
388491046	214	unknown [Lotus japonicus]	1.0	0.757	0.754	2e-72
224141023	204	predicted protein [Populus trichocarpa]	1.0	0.794	0.753	3e-71
357496499	212	Transmembrane emp24 domain-containing pr	1.0	0.764	0.736	4e-70
225462930	218	PREDICTED: transmembrane emp24 domain-co	1.0	0.743	0.746	6e-70
217073368	212	unknown [Medicago truncatula] gi|3885023	1.0	0.764	0.736	7e-70
449447386	190	PREDICTED: transmembrane emp24 domain-co	0.993	0.847	0.726	8e-70

>gi|225452883|ref|XP_002283884.1| PREDICTED: transmembrane emp24 domain-containing protein bai isoform 1 [Vitis vinifera]

 Score =  294 bits (753), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 152/162 (93%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           V+NPNEG+PLPDTHK+T +V+SPYGN+YH GDH+ESGNFAFTAAE GDYTACFW+P+H P
Sbjct: 49  VINPNEGFPLPDTHKITAQVSSPYGNNYHTGDHIESGNFAFTAAEEGDYTACFWAPQHKP 108

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
           P TVT++F+W+TGV +KDW+KVAKKGQV++MELELKKL+DTV+SIHEEMFYLREREEEMQ
Sbjct: 109 PLTVTIDFDWRTGVAAKDWSKVAKKGQVEVMELELKKLYDTVTSIHEEMFYLREREEEMQ 168

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           ELN+ TNS+MA+  F+SL+VCLSVA LQ+WHLKTFFERKKLL
Sbjct: 169 ELNRATNSKMATFSFLSLLVCLSVAGLQLWHLKTFFERKKLL 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082949|emb|CBI22250.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 152/162 (93%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           V+NPNEG+PLPDTHK+T +V+SPYGN+YH GDH+ESGNFAFTAAE GDYTACFW+P+H P
Sbjct: 8   VINPNEGFPLPDTHKITAQVSSPYGNNYHTGDHIESGNFAFTAAEEGDYTACFWAPQHKP 67

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
           P TVT++F+W+TGV +KDW+KVAKKGQV++MELELKKL+DTV+SIHEEMFYLREREEEMQ
Sbjct: 68  PLTVTIDFDWRTGVAAKDWSKVAKKGQVEVMELELKKLYDTVTSIHEEMFYLREREEEMQ 127

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           ELN+ TNS+MA+  F+SL+VCLSVA LQ+WHLKTFFERKKLL
Sbjct: 128 ELNRATNSKMATFSFLSLLVCLSVAGLQLWHLKTFFERKKLL 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488943|ref|XP_003633845.1| PREDICTED: transmembrane emp24 domain-containing protein bai isoform 2 [Vitis vinifera]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 152/169 (89%), Gaps = 7/169 (4%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           V+NPNEG+PLPDTHK+T +V+SPYGN+YH GDH+ESGNFAFTAAE GDYTACFW+P+H P
Sbjct: 49  VINPNEGFPLPDTHKITAQVSSPYGNNYHTGDHIESGNFAFTAAEEGDYTACFWAPQHKP 108

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLRER----- 115
           P TVT++F+W+TGV +KDW+KVAKKGQV++MELELKKL+DTV+SIHEEMFYLRER     
Sbjct: 109 PLTVTIDFDWRTGVAAKDWSKVAKKGQVEVMELELKKLYDTVTSIHEEMFYLRERYGQTN 168

Query: 116 --EEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
             EEEMQELN+ TNS+MA+  F+SL+VCLSVA LQ+WHLKTFFERKKLL
Sbjct: 169 FWEEEMQELNRATNSKMATFSFLSLLVCLSVAGLQLWHLKTFFERKKLL 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578274|ref|XP_002530004.1| Transmembrane protein Tmp21 precursor, putative [Ricinus communis] gi|223530483|gb|EEF32366.1| Transmembrane protein Tmp21 precursor, putative [Ricinus communis]

 Score =  285 bits (730), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 126/162 (77%), Positives = 148/162 (91%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           +VNPN+G PLPDTHKLTVK TSPYG+SYH GDHVESGNFAFTAAEAGDYT CFW+ EH P
Sbjct: 29  IVNPNDGSPLPDTHKLTVKATSPYGSSYHYGDHVESGNFAFTAAEAGDYTTCFWAIEHRP 88

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
             T+T++FEW+TGV +KDW+KVAKKGQ+++MELELKKL DTV+SIH+EMFYLREREEEMQ
Sbjct: 89  EVTLTIDFEWRTGVAAKDWSKVAKKGQIEIMELELKKLLDTVTSIHDEMFYLREREEEMQ 148

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           +LN++TNSRMASL  +SLVVC+SVA LQ+WHLK +FERKKLL
Sbjct: 149 QLNRSTNSRMASLSLLSLVVCVSVAGLQLWHLKRYFERKKLL 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491046|gb|AFK33589.1| unknown [Lotus japonicus]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 146/163 (89%), Gaps = 1/163 (0%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           +VNPNEGYP+PDTHK+TVKV+SPYGNSYH GD V+SG+FAFTAAE GDYTACFW P+   
Sbjct: 52  IVNPNEGYPIPDTHKITVKVSSPYGNSYHNGDQVDSGDFAFTAAEDGDYTACFWIPDSRA 111

Query: 61  PAT-VTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEM 119
             + VT+EF+W+TGV +KDW+KVAKKGQV++ME ELKKL+DTV+SIHEEMFYLREREEEM
Sbjct: 112 GVSIVTIEFDWRTGVAAKDWSKVAKKGQVEVMEFELKKLYDTVASIHEEMFYLREREEEM 171

Query: 120 QELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           Q LNK TNS+M + GF+S+VVCLSVA +Q+WHLKTFFERKKLL
Sbjct: 172 QNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141023|ref|XP_002323874.1| predicted protein [Populus trichocarpa] gi|222866876|gb|EEF04007.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 122/162 (75%), Positives = 144/162 (88%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           VVNPNEGYPLPDTHKL V+VTSPYGN+YH GD V+SGNFAFTAAEAGDYT CF +P+H P
Sbjct: 43  VVNPNEGYPLPDTHKLNVRVTSPYGNNYHHGDQVDSGNFAFTAAEAGDYTTCFTAPDHKP 102

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
             TV +EFEWKTGV +KDW+K+AKK QV++ME+ELKKL DTV+SI+EEMF+LR REEEMQ
Sbjct: 103 ETTVAIEFEWKTGVAAKDWSKIAKKEQVEVMEIELKKLLDTVTSINEEMFHLRVREEEMQ 162

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           +LN++TNS+MA L F+SLVVC SVA LQ+WHLK+ FERKKLL
Sbjct: 163 QLNQSTNSKMAGLSFLSLVVCFSVAGLQLWHLKSHFERKKLL 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496499|ref|XP_003618538.1| Transmembrane emp24 domain-containing protein [Medicago truncatula] gi|355493553|gb|AES74756.1| Transmembrane emp24 domain-containing protein [Medicago truncatula]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 120/163 (73%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN- 59
           VVNPNEGYPLPD+HK+TVKV+SP+ N+ H  +HVESGNFAFTA E GDYTACFW P    
Sbjct: 50  VVNPNEGYPLPDSHKITVKVSSPHSNTNHYAEHVESGNFAFTAPEGGDYTACFWIPSSRM 109

Query: 60  PPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEM 119
            P+TVT+EFEW++GV +KDW+KVAKKGQ+++ME ELKKL+D VSSIH+EMFYLREREEEM
Sbjct: 110 APSTVTIEFEWRSGVTAKDWSKVAKKGQLEIMEFELKKLYDAVSSIHDEMFYLREREEEM 169

Query: 120 QELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           Q+LNK TNSRM + GF+S++VCLSVA +Q+WHLKTFFERKKLL
Sbjct: 170 QDLNKATNSRMFTFGFLSILVCLSVAGMQLWHLKTFFERKKLL 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462930|ref|XP_002267401.1| PREDICTED: transmembrane emp24 domain-containing protein bai-like [Vitis vinifera]

 Score =  268 bits (685), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 140/162 (86%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
           VVNPN+GYP+PD+HK+TV+VTS YGN+YH  D V+SG FAF AAEAGDY ACFW   H P
Sbjct: 57  VVNPNDGYPIPDSHKVTVRVTSAYGNNYHYADLVDSGQFAFPAAEAGDYMACFWVVYHKP 116

Query: 61  PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQ 120
           P T+T++ +WKTGV +KDW+ VAKKGQVD+MELELKKL+DTV+SIHEEMFYLR REEEMQ
Sbjct: 117 PLTLTIDLDWKTGVAAKDWSNVAKKGQVDVMELELKKLYDTVTSIHEEMFYLRGREEEMQ 176

Query: 121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           ELN+ TNSRMA L F+SL VCLSVA LQ+WHLK FFERKKLL
Sbjct: 177 ELNQATNSRMAWLSFLSLFVCLSVAGLQLWHLKNFFERKKLL 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073368|gb|ACJ85043.1| unknown [Medicago truncatula] gi|388502356|gb|AFK39244.1| unknown [Medicago truncatula]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 120/163 (73%), Positives = 144/163 (88%), Gaps = 1/163 (0%)

Query: 1   VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN- 59
           VVNPNEGYPLPD+HK+TVKV+SP+ N+ H  +HVESGNFAFTA E GDYTACFW P    
Sbjct: 50  VVNPNEGYPLPDSHKITVKVSSPHSNTNHYAEHVESGNFAFTAPEGGDYTACFWIPSSRM 109

Query: 60  PPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEM 119
            P+TVT+EFEW++GV +KDW+KVAKKGQ+++ME ELKKL+D VSSIH+EMFYLREREEEM
Sbjct: 110 APSTVTIEFEWRSGVTAKDWSKVAKKGQLEIMEFELKKLYDAVSSIHDEMFYLREREEEM 169

Query: 120 QELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           Q+LNK TNSRM + GF+S++VCLSVA +Q+WHLKTFFERKKLL
Sbjct: 170 QDLNKATNSRMFTFGFLSILVCLSVAGVQLWHLKTFFERKKLL 212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447386|ref|XP_004141449.1| PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Cucumis sativus]

 Score =  267 bits (683), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 117/161 (72%), Positives = 144/161 (89%)

Query: 2   VNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPP 61
           VN NEG+P+PD+HK+TV+V+SP+GN+YH  DHVESG+FAFTAAE GDYT CFW PE NPP
Sbjct: 30  VNLNEGFPIPDSHKITVRVSSPHGNTYHNADHVESGHFAFTAAETGDYTTCFWVPEQNPP 89

Query: 62  ATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQE 121
             V+VEF+W++GV SKDW+KVAKKGQ+++MELELKKL DT++SIH+EMFYLREREEEMQ 
Sbjct: 90  GLVSVEFDWRSGVSSKDWSKVAKKGQIEVMELELKKLSDTITSIHDEMFYLREREEEMQL 149

Query: 122 LNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
           LN++T ++MA+   +SL VCLSVAALQ+WHLKTFFERKKLL
Sbjct: 150 LNRSTTTKMATFSILSLGVCLSVAALQLWHLKTFFERKKLL 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	1.0	0.764	0.537	9.8e-48
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	1.0	0.760	0.576	2.6e-47
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	1.0	0.757	0.530	6.9e-47
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.987	0.747	0.531	9.1e-45
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	1.0	0.72	0.537	1.5e-44
TAIR|locus:2056730	166	AT2G03040 [Arabidopsis thalian	0.654	0.638	0.570	8.8e-31
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.907	0.677	0.405	3.8e-30
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.932	0.699	0.414	1.5e-28
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.907	0.693	0.378	1.1e-25
DICTYBASE|DDB_G0277923	221	empD "emp24/gp25L/p24 family p	0.876	0.642	0.364	5.8e-18

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 87/162 (53%), Positives = 117/162 (72%)

Query:     1 VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
             ++NP+E +PLP +HK+TV+VTSP G +YH+ D VESG F+F A E GDY +CF + +H P
Sbjct:    51 IINPHEDHPLPSSHKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKP 110

Query:    61 PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQ 120
               T+ ++F+W+TG+ +KDW+ VAKK QV+ ME E+KKLF+TV+ IH              
Sbjct:   111 ETTLIIDFDWRTGIHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMH 170

Query:   121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
              LN  TNS+MA L F+SL VCLSVA LQ WHLKTFF++KKL+
Sbjct:   171 NLNIATNSKMAWLSFVSLAVCLSVAGLQFWHLKTFFQKKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 94/163 (57%), Positives = 117/163 (71%)

Query:     1 VVNPNE-GYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN 59
             +VNPNE  +PLPD+HK+ VKV  P G + H+ D VE+G F+FTA E G Y AC  + ++ 
Sbjct:    51 IVNPNEDNHPLPDSHKIIVKVMPPQGKNLHEADKVEAGQFSFTAYENGSYVACITAIDYK 110

Query:    60 PPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXX 119
             P  T+T++F+WKTGV SK+WT VAKK QVDMME ++K L DTV SIH             
Sbjct:   111 PETTLTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKTLMDTVISIHEEMYYLREREEEM 170

Query:   120 QELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
             QELN++TNS+MA L F SLVVCLSVA LQ WHLKTFFE+KKL+
Sbjct:   171 QELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKTFFEKKKLI 213

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 86/162 (53%), Positives = 119/162 (73%)

Query:     1 VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
             VVNPNE +P P +HK++++VTS YGN+YH  + VESG FAFTA E+GDY AC+ + +H P
Sbjct:    53 VVNPNEAHPSPQSHKISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKP 112

Query:    61 PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQ 120
               T++++F+W+TGV SK W+ VAKK QV++ME ++K+L +TV+SIH             Q
Sbjct:   113 EVTLSIDFDWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQ 172

Query:   121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
              LN+ TNS+MA L F+SL VCL VA +Q  HLKTFFE+KK++
Sbjct:   173 NLNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 85/160 (53%), Positives = 114/160 (71%)

Query:     3 NPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPA 62
             NP+EG  LP THK++VKVTS  GN+YH  + V+SG FAF+A EAGDY ACF + +H P  
Sbjct:    55 NPHEGQALPQTHKISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEV 114

Query:    63 TVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQEL 122
             +++++FEWKTGV SK W  VAKK QV++ME E+K L DTV+SIH             Q+L
Sbjct:   115 SLSIDFEWKTGVQSKSWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDL 174

Query:   123 NKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
             N++TN++MA L  +S  VC+ VA +Q  HLKTFFE+KK++
Sbjct:   175 NRSTNTKMAWLSVLSFFVCIGVAGMQFLHLKTFFEKKKVI 214

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 87/162 (53%), Positives = 114/162 (70%)

Query:     1 VVNPNEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP 60
             +VNPNEG+ LP +HKL V V+SP G S+H  ++VESG F FTA E GDY  CF +P + P
Sbjct:    64 IVNPNEGHHLPPSHKLFVTVSSPKGKSHHHAENVESGKFVFTAEETGDYMTCFVAPGYRP 123

Query:    61 PATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQ 120
              A   V+FEWK+GV +KDWT +AK+GQ+ M+E+E++KL D   +IH             Q
Sbjct:   124 TAKFAVDFEWKSGVEAKDWTTIAKRGQITMLEVEVRKLLDVTETIHEEMFQLIEREREMQ 183

Query:   121 ELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
             ELN++TNSRMA+L  +S VV +SVA LQ+ HLK+F ERKKLL
Sbjct:   184 ELNRSTNSRMAALSLLSFVVTMSVAGLQLRHLKSFLERKKLL 225

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056730 AT2G03040 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 61/107 (57%), Positives = 80/107 (74%)

Query:     1 VVNPNEGY-PLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN 59
             +VNPNE + PLPD+HK+ VKV  P G + H+ D+VE+G F+FTA E G Y AC  + ++ 
Sbjct:    51 IVNPNEDHHPLPDSHKIIVKVMPPQGKNLHEADNVEAGQFSFTAYENGSYVACITAIDYK 110

Query:    60 PPATVTVEFEWKTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIH 106
             P  T+T++F+WKTGV SK+WT VAKK QVDMME ++K L DTV SIH
Sbjct:   111 PETTLTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQVKTLMDTVISIH 157

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 60/148 (40%), Positives = 97/148 (65%)

Query:    16 LTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPP-ATVTVEFEWKTGV 74
             ++VKVTSPYGN+ H  ++V  G FAFT  E+G+Y ACFW+ E +     V++  +W+TG+
Sbjct:    70 ISVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGI 129

Query:    75 VSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQELNKTTNSRMASLG 134
              +KDW  +AKK +++ +ELE++KL   V +IH             + +++ TNSR+A   
Sbjct:   130 AAKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYS 189

Query:   135 FISLVVCLSVAALQIWHLKTFFERKKLL 162
              +SL VC++V+  Q+ +LK +FE+KKL+
Sbjct:   190 IMSLGVCIAVSGFQVLYLKQYFEKKKLI 217

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 63/152 (41%), Positives = 94/152 (61%)

Query:    12 DTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFW-SPEHNPPATVTVEFEW 70
             +T  ++ KVTSPYGN+ H  ++V  G FAFT  EAG+Y ACFW    H+    +T+  +W
Sbjct:    65 NTPAVSSKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDW 124

Query:    71 KTGVVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQELNKTTNSRM 130
             K G+ +KDW  VAKK +++ +EL+L++L   V SI              +E+++TTNSR+
Sbjct:   125 KMGIAAKDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRV 184

Query:   131 ASLGFISLVVCLSVAALQIWHLKTFFERKKLL 162
             A    +SL VC+ V   QI +LK +F +KKL+
Sbjct:   185 AWFSIMSLGVCVVVVGSQILYLKRYFHKKKLI 216

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 56/148 (37%), Positives = 91/148 (61%)

Query:    16 LTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSP-EHNPPATVTVEFEWKTGV 74
             ++VKVT+PYG   H  ++  +G FAFT  E+G Y ACF +  + +     ++  +WKTG+
Sbjct:    65 VSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGI 124

Query:    75 VSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQELNKTTNSRMASLG 134
              +KDW  +A+K +++ +ELE KKL   V +IH             + +++ TNSR+A   
Sbjct:   125 AAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYS 184

Query:   135 FISLVVCLSVAALQIWHLKTFFERKKLL 162
              +SL +C+ V+ LQI +LK +FE+KKL+
Sbjct:   185 IMSLGICIVVSGLQILYLKQYFEKKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0277923 empD "emp24/gp25L/p24 family protein D" [Dictyostelium discoideum (taxid:44689)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 54/148 (36%), Positives = 77/148 (52%)

Query:    20 VTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNP-----PATVTVEFEWKTGV 74
             V  P G+         +G  AF A EAGDY+ CF    + P     P + TV  E KTGV
Sbjct:    75 VRGPTGDLILVNHDASTGVIAFNAQEAGDYSFCFLD-NYRPGAQAMPLSRTVSLEIKTGV 133

Query:    75 VSKDWTKVAKKGQVDMMELELKKLFDTVSSIHXXXXXXXXXXXXXQELNKTTNSRMASLG 134
              + D++ V  KGQ+   E+ELKK+ D V SI              +  N++TNSR+A+L 
Sbjct:   134 EANDYSDVITKGQLKPSEIELKKIEDVVDSIKVEILYMKNREETMRNTNESTNSRVANLS 193

Query:   135 FISLVVCLSVAALQIWHLKTFFERKKLL 162
                  V +  AA QI +LK +F+++KL+
Sbjct:   194 IFCFFVLIGSAAFQINYLKRYFKQRKLI 221

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQY3	P24D9_ARATH	No assigned EC number	0.6111	1.0	0.7570	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	162
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	1e-44

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  144 bits (366), Expect = 1e-44
 Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 5/144 (3%)

Query: 15  KLTVKVTSPYGNSYHQGDHVES-GNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTG 73
             T+      GN  +  +  +S G F+FTA E+G+Y  CF +   +  ++ TV F+ K G
Sbjct: 39  DFTITDPDGNGNVIYSKEDRKSGGKFSFTATESGEYKFCFSN-SFSTFSSKTVSFDIKVG 97

Query: 74  VVSKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASL 133
             +KD   +AKK ++D +E ELKKL D ++ I  E  YLRERE   +E N++TNSR+   
Sbjct: 98  EEAKD---IAKKEKLDPLEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWW 154

Query: 134 GFISLVVCLSVAALQIWHLKTFFE 157
             I ++V + V+ LQ+++LK FFE
Sbjct: 155 SIIQILVLIGVSVLQVYYLKRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	99.97
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	99.97
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	94.8
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	92.78
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	91.18
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	89.36
TIGR03503	374	conserved hypothetical protein TIGR03503. This set	88.17
PF09315	179	DUF1973: Domain of unknown function (DUF1973); Int	87.96
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	87.72
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	87.07
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	86.05
PF12690	82	BsuPI: Intracellular proteinase inhibitor; InterPr	83.23
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	83.06
PRK12634	221	flgD flagellar basal body rod modification protein	82.31

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-40  Score=240.97  Aligned_cols=149  Identities=55%  Similarity=0.917  Sum_probs=142.8

Q ss_pred             ceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecC--CCCCCceEEEEEEeeeCCcccchhhhhhccccchH
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSP--EHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVDMM   91 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~--~~~~~~~~~v~~~~~~g~~~~~~~~~a~~~~~~~l   91 (162)
                      +.+++.|+||.|+.+++.++..+|+|+|++.++|.|.+||.+.  .+.+.....|.|++..|.+++||+++|++++++|+
T Consensus        60 ~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~  139 (210)
T KOG1691|consen   60 HKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPL  139 (210)
T ss_pred             ceEEEEEEcCCCceeehhhccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHH
Confidence            7899999999999999999999999999999999999999994  44344458999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccC
Q 040567           92 ELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL  162 (162)
Q Consensus        92 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kkli  162 (162)
                      +..+.+|++.+..|.++.-|+|.||++.|+++|+||+||.|+|++.++++++++.||++|||+||++||||
T Consensus       140 E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI  210 (210)
T KOG1691|consen  140 EVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI  210 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4e-39  Score=229.85  Aligned_cols=148  Identities=30%  Similarity=0.518  Sum_probs=135.5

Q ss_pred             CCceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCC-CCceEEEEEEeeeCCcccchhhhhhccccch
Q 040567           12 DTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN-PPATVTVEFEWKTGVVSKDWTKVAKKGQVDM   90 (162)
Q Consensus        12 ~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~~~g~~~~~~~~~a~~~~~~~   90 (162)
                      +-+++++.|++|+|+.++..+..+.|+|+|+++.+|.|++||+|..+. +++.  |.|+++.|+.+. +++.++.++.++
T Consensus        53 g~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF~N~~s~mtpk~--V~F~ihvg~~~~-~~d~~~d~~~~~  129 (201)
T KOG1692|consen   53 GFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCFSNKMSTMTPKT--VMFTIHVGHAPQ-RDDLAKDAHQNK  129 (201)
T ss_pred             CccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEecCCCCCCCceE--EEEEEEEeeccc-cchhcccccccH
Confidence            556899999999999999999999999999999999999999999986 5665  557777776654 445788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcccC
Q 040567           91 MELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKKLL  162 (162)
Q Consensus        91 l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kkli  162 (162)
                      |+..+.+|.+.|..++.||+|+..|+++||.++|+|++||.|||++|.++|++++++|||||||||+.|++.
T Consensus       130 L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrvv  201 (201)
T KOG1692|consen  130 LEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRVV  201 (201)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999863

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-38  Score=224.86  Aligned_cols=160  Identities=25%  Similarity=0.342  Sum_probs=145.5

Q ss_pred             CcCCCCCCCCCCCc-eEEEEEECCCCC--eEEeccccccccEEEEeeccCcEEEEEecCCCC--CCceEEEEEEeeeCCc
Q 040567            1 VVNPNEGYPLPDTH-KLTVKVTSPYGN--SYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN--PPATVTVEFEWKTGVV   75 (162)
Q Consensus         1 ~~~~~~~~~~~~~~-~i~~~i~~p~g~--~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~--~~~~~~v~~~~~~g~~   75 (162)
                      ++|+..++|...++ ++.+.|.+|.++  +|+++.+.++|+|+|++..+|+|++|+.+..+.  .+...+|.++++.|.+
T Consensus        51 lyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~  130 (215)
T KOG1690|consen   51 LYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDH  130 (215)
T ss_pred             eecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCch
Confidence            57888998886555 899999999888  899999999999999999999999999988764  5667799999999998


Q ss_pred             ccchhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040567           76 SKDWTKVAKKGQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTF  155 (162)
Q Consensus        76 ~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~f  155 (162)
                      +.++..+  ++..+.++.++..|.+++..|+.||.++|.||+++|++.||+|+|++|||++|+++|+++|+||+.+||+|
T Consensus       131 a~l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~F  208 (215)
T KOG1690|consen  131 ANLDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSF  208 (215)
T ss_pred             hhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            8776543  45667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccC
Q 040567          156 FERKKLL  162 (162)
Q Consensus       156 F~~kkli  162 (162)
                      |.++|++
T Consensus       209 FvkqKlv  215 (215)
T KOG1690|consen  209 FVKQKLV  215 (215)
T ss_pred             HHHhhcC
Confidence            9999985

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-32  Score=196.29  Aligned_cols=147  Identities=20%  Similarity=0.355  Sum_probs=129.6

Q ss_pred             CceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCCCCceEEEEEEeeeCCcccchhhhh-hccccchH
Q 040567           13 THKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVA-KKGQVDMM   91 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~v~~~~~~g~~~~~~~~~a-~~~~~~~l   91 (162)
                      .-+|++.|.+|+|++++...++..+.|.|+++..|+|++||+|.++. ..+..++++++.|.+++-.+... ....++.+
T Consensus        58 ~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~m  136 (209)
T KOG1693|consen   58 HFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQM  136 (209)
T ss_pred             ceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHH
Confidence            34999999999999999999999999999999999999999999887 34446778887776554333321 22346789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 040567           92 ELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKK  160 (162)
Q Consensus        92 ~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kk  160 (162)
                      +..+..|+..|+.|.+.|.|.|.||.+.+.+++|+++||.|||++++++++++++.||+.||.||..|+
T Consensus       137 ena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r  205 (209)
T KOG1693|consen  137 ENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRR  205 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999886

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=99.97  E-value=1.2e-32  Score=200.70  Aligned_cols=145  Identities=34%  Similarity=0.562  Sum_probs=5.6

Q ss_pred             CceEEEEEE--CCCCCeEEecccc-ccccEEEEeeccCcEEEEEecCCCCCCceEEEEEEeeeCCcccchhhhhhccccc
Q 040567           13 THKLTVKVT--SPYGNSYHQGDHV-ESGNFAFTAAEAGDYTACFWSPEHNPPATVTVEFEWKTGVVSKDWTKVAKKGQVD   89 (162)
Q Consensus        13 ~~~i~~~i~--~p~g~~v~~~~~~-~~g~~~f~~~~~G~y~~Cf~n~~~~~~~~~~v~~~~~~g~~~~~~~~~a~~~~~~   89 (162)
                      ..++++.|+  +|+|+.++..... ++|.|+|+++++|+|++||+|+.+.......|.|+++.|.++.++.+.+++++++
T Consensus        36 ~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  115 (183)
T PF01105_consen   36 AYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLD  115 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhh
Confidence            468999999  5666899888655 4579999999999999999999887211266778888887666667788899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 040567           90 MMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFE  157 (162)
Q Consensus        90 ~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~  157 (162)
                      +++..|++|...++.+.++|+|++.|+.+|+.+++++++|+++|+++++++++++++||+++||+||+
T Consensus       116 ~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  116 PLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             --------------------------------------------------------------HHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.5e-29  Score=182.68  Aligned_cols=147  Identities=20%  Similarity=0.355  Sum_probs=125.7

Q ss_pred             ceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCCC-CCceEEEEEEe-eeCCc---ccchhhhhhc---
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEHN-PPATVTVEFEW-KTGVV---SKDWTKVAKK---   85 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~-~~g~~---~~~~~~~a~~---   85 (162)
                      .+|+|++.+|.|.++.+...+.+|.+++.+.++|.|++||+|++|+ ..|.+-++|-+ ..|+.   +..|.+.++.   
T Consensus        71 l~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~CfDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~  150 (236)
T KOG3287|consen   71 LDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCFDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQ  150 (236)
T ss_pred             cceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEEcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhh
Confidence            5899999999999999999999999999999999999999999998 55554444422 22332   2334443322   


Q ss_pred             --cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 040567           86 --GQVDMMELELKKLFDTVSSIHEEMFYLREREEEMQELNKTTNSRMASLGFISLVVCLSVAALQIWHLKTFFERKK  160 (162)
Q Consensus        86 --~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~rv~~~si~qi~vli~~~~~Qv~~lk~fF~~kk  160 (162)
                        ..++.+++.++++...+..+...|..+|.||.|+|.+.+|++.||.|||++|+++||+++++||++||++|..|+
T Consensus       151 Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~  227 (236)
T KOG3287|consen  151 LDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS  227 (236)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence              246889999999999999999999999999999999999999999999999999999999999999999999875

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=94.80  E-value=0.19  Score=32.64  Aligned_cols=51  Identities=24%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             CCCCCCceEEEEEECCCCCeEEeccc---cccccEEE--Eee---ccCcEEEEEecCCC
Q 040567            8 YPLPDTHKLTVKVTSPYGNSYHQGDH---VESGNFAF--TAA---EAGDYTACFWSPEH   58 (162)
Q Consensus         8 ~~~~~~~~i~~~i~~p~g~~v~~~~~---~~~g~~~f--~~~---~~G~y~~Cf~n~~~   58 (162)
                      ...|....+.+.|+||+|+.+.....   ...|.+++  ..+   ..|.|++-+.....
T Consensus        30 ~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~   88 (99)
T PF01835_consen   30 FKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD   88 (99)
T ss_dssp             CSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred             cccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence            44556679999999999999987655   23554443  332   25888888887543

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=92.78  E-value=1.2  Score=26.31  Aligned_cols=47  Identities=13%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             CCCCceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCC
Q 040567           10 LPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEH   58 (162)
Q Consensus        10 ~~~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~   58 (162)
                      .|......+.+.+.++.-+......+  .++|+...+|.|+|.+.....
T Consensus         4 ~~~~~~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~~   50 (66)
T PF07495_consen    4 NPENIRYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKDN   50 (66)
T ss_dssp             CCTTEEEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEET
T ss_pred             CCCceEEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEECC
Confidence            44555788888888887766554433  899999999999999887654

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=91.18  E-value=1.4  Score=28.32  Aligned_cols=45  Identities=29%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCC
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~   57 (162)
                      +..+.+.|.+|+|+.+--. .+..+|  ..+|++.+.|.|.+.+.-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4579999999999654322 233445  45688899999998887664

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=89.36  E-value=1.2  Score=28.75  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=27.6

Q ss_pred             ceEEEEEECCCCC----eEE-ecccccccc--EEEEeeccCcEEEEEecC
Q 040567           14 HKLTVKVTSPYGN----SYH-QGDHVESGN--FAFTAAEAGDYTACFWSP   56 (162)
Q Consensus        14 ~~i~~~i~~p~g~----~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~   56 (162)
                      ..+.+.|.+|+|.    .+. .-.+..+|.  .+|++++.|.|++++.-.
T Consensus        42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            4678888899886    322 222234454  457778888888877654

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>TIGR03503 conserved hypothetical protein TIGR03503

Probab=88.17  E-value=8.1  Score=31.62  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=33.0

Q ss_pred             CCCCCCCCCceEEEEEECCCCCeEEeccccccccEEEEe---eccCcEEEEEecCC
Q 040567            5 NEGYPLPDTHKLTVKVTSPYGNSYHQGDHVESGNFAFTA---AEAGDYTACFWSPE   57 (162)
Q Consensus         5 ~~~~~~~~~~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~---~~~G~y~~Cf~n~~   57 (162)
                      +.+--.|++-.+++.+++|+|..........++...+..   .+.|.|++-..--.
T Consensus       233 d~~~i~~~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~  288 (374)
T TIGR03503       233 DAGHIDPGSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFG  288 (374)
T ss_pred             ccceeccccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEE
Confidence            333344566689999999999854444444444444433   46789987655443

This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.

>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels

Probab=87.96  E-value=3.7  Score=30.00  Aligned_cols=46  Identities=20%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             ceEEEEEECCCCCeEEe-ccccccc--cEEEE-eeccCcEEEEEecCCCC
Q 040567           14 HKLTVKVTSPYGNSYHQ-GDHVESG--NFAFT-AAEAGDYTACFWSPEHN   59 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~-~~~~~~g--~~~f~-~~~~G~y~~Cf~n~~~~   59 (162)
                      ....+.+.+|+|+.+.. ..+....  .+... ..+.|.+++++.|..+.
T Consensus        41 ~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~   90 (179)
T PF09315_consen   41 SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS   90 (179)
T ss_pred             CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC
Confidence            35678899999999876 2222233  33332 25689999999777654

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=87.72  E-value=0.78  Score=31.87  Aligned_cols=24  Identities=17%  Similarity=0.101  Sum_probs=19.7

Q ss_pred             EEEeeccCcEEEEEecCCCC-CCce
Q 040567           40 AFTAAEAGDYTACFWSPEHN-PPAT   63 (162)
Q Consensus        40 ~f~~~~~G~y~~Cf~n~~~~-~~~~   63 (162)
                      ++.++.+|.|-++|+|+.|. ..|.
T Consensus       104 s~~c~~~GvYvLkFDNSYS~~rsK~  128 (136)
T PF13897_consen  104 SHTCPGPGVYVLKFDNSYSWFRSKK  128 (136)
T ss_pred             EEECCCCeEEEEEeeCcceeEEeeE
Confidence            56788999999999999886 4444

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=87.07  E-value=1.4  Score=26.49  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=36.6

Q ss_pred             eEEEEEECCCCCeEEe--ccccccccEEEEeeccCcEEEEEecCCC
Q 040567           15 KLTVKVTSPYGNSYHQ--GDHVESGNFAFTAAEAGDYTACFWSPEH   58 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~--~~~~~~g~~~f~~~~~G~y~~Cf~n~~~   58 (162)
                      ++.|.|++.+|.....  ..-...|.+.|.--..|.|.+=......
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~   48 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD   48 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence            5889999999998875  4445789999999999999999887443

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=86.05  E-value=2.5  Score=27.93  Aligned_cols=47  Identities=13%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             CCceEEEEEECCCCCeEEeccccc--cccEEEEe--eccCcEEEEEecCCC
Q 040567           12 DTHKLTVKVTSPYGNSYHQGDHVE--SGNFAFTA--AEAGDYTACFWSPEH   58 (162)
Q Consensus        12 ~~~~i~~~i~~p~g~~v~~~~~~~--~g~~~f~~--~~~G~y~~Cf~n~~~   58 (162)
                      +-.++++.|+|.+|+++|++.-..  ....++..  ..+|.|.+=+.+...
T Consensus        46 ~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   46 PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             --SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            345799999999999999875433  22455555  568999999998865

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo

Probab=83.23  E-value=4.2  Score=25.70  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=15.4

Q ss_pred             CCCceEEEEEECCCCCeEEeccc
Q 040567           11 PDTHKLTVKVTSPYGNSYHQGDH   33 (162)
Q Consensus        11 ~~~~~i~~~i~~p~g~~v~~~~~   33 (162)
                      ++++..+|.|+|++|+.++....
T Consensus        21 ~sgq~~D~~v~d~~g~~vwrwS~   43 (82)
T PF12690_consen   21 PSGQRYDFVVKDKEGKEVWRWSD   43 (82)
T ss_dssp             SSS--EEEEEE-TT--EEEETTT
T ss_pred             CCCCEEEEEEECCCCCEEEEecC
Confidence            58899999999999999997653

It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=83.06  E-value=1.1  Score=27.58  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             eEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCCC
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPEH   58 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~~   58 (162)
                      +..+.+.+.++.......-..+|.|.|..-.+|.|.+-+.-...
T Consensus        16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~   59 (82)
T PF13620_consen   16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGY   59 (82)
T ss_dssp             T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTE
T ss_pred             CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCc
Confidence            67888888877776665556799999996667999999876654

>PRK12634 flgD flagellar basal body rod modification protein; Reviewed

Probab=82.31  E-value=4.8  Score=30.47  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             CceEEEEEECCCCCeEEecc--ccccccEEEEeec---------cCcEEEEEecC
Q 040567           13 THKLTVKVTSPYGNSYHQGD--HVESGNFAFTAAE---------AGDYTACFWSP   56 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~~--~~~~g~~~f~~~~---------~G~y~~Cf~n~   56 (162)
                      ...+.+.|+|.+|++|+...  ..+.|.+.|....         +|.|.+.+.-.
T Consensus       121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~  175 (221)
T PRK12634        121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT  175 (221)
T ss_pred             CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence            34799999999999998754  3457888887633         58999999643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	92.86
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.58
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	88.8
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.53
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	87.9
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.04
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	85.56
2ds4_A	113	Tripartite motif protein 45; beta-sandwich, immuno	84.99
3irp_X	429	URO-adherence factor A; DEV-IGG fold, cell WALL, h	84.9
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	83.66
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.57
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.45
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.12
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	82.91
3d33_A	108	Domain of unknown function with AN immunoglobulin	82.72
3isy_A	120	Bsupi, intracellular proteinase inhibitor; intrace	82.4
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.25
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	81.95
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	81.82
1qfh_A	212	Protein (gelation factor); actin binding protein,	81.26
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	80.86
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	80.8
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	80.66

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.86  E-value=0.55  Score=29.55  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=37.7

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTVE   67 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~   67 (162)
                      ..++.+.|.+|+|..+.-. .+..+|  .++|++++.|.|.+++.-.... .+..+.+.
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            4579999999999865321 122345  5668899999999999866544 44454443

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.58  E-value=0.41  Score=30.35  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=36.6

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ..++.+.|.+|+|..+--. .+..+|  .++|++.+.|.|++|+.-.... .+..+.+
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~I~GSPF~v   86 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPLQF   86 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCEECCCCCeEE
Confidence            3379999999999865322 122345  4667889999999999866544 3445443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=88.80  E-value=2.4  Score=26.58  Aligned_cols=47  Identities=23%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             CCCc-eEEEEEECCCCCeEEecccc--ccccE--EEEe---eccCcEEEEEecCC
Q 040567           11 PDTH-KLTVKVTSPYGNSYHQGDHV--ESGNF--AFTA---AEAGDYTACFWSPE   57 (162)
Q Consensus        11 ~~~~-~i~~~i~~p~g~~v~~~~~~--~~g~~--~f~~---~~~G~y~~Cf~n~~   57 (162)
                      |... .+.+.|.||+|+.+.+....  ..|.+  +|..   ...|.|++......
T Consensus        32 p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           32 PLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             BCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            4434 47999999999998874322  24443  3444   24699999998653

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.53  E-value=1.2  Score=28.46  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=36.8

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ...+.+.|.+|+|..+--. .+..+|  ..+|++.+.|.|.+.+.-.... ....+.+
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v   87 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQF   87 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSSBCSSCSEEE
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCEeCCCCCeEE
Confidence            4578999999999865432 222345  4568889999999998866544 3445443

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=87.90  E-value=0.69  Score=36.60  Aligned_cols=32  Identities=19%  Similarity=0.131  Sum_probs=24.4

Q ss_pred             EEEEeeccCcEEEEEecCCCC-CCceEEEEEEe
Q 040567           39 FAFTAAEAGDYTACFWSPEHN-PPATVTVEFEW   70 (162)
Q Consensus        39 ~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~   70 (162)
                      =+|.+.++|.|.+||+|+.|. ..+.+...+.+
T Consensus       351 G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v  383 (403)
T 1olm_A          351 GTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV  383 (403)
T ss_dssp             EEEECCSCEEEEEEEECTTCCCCSEEEEEEEEE
T ss_pred             CEEEcCCCeEEEEEEeccccceeceEEEEEEEE
Confidence            357899999999999999886 56665544444

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.04  E-value=2.4  Score=26.91  Aligned_cols=52  Identities=21%  Similarity=0.361  Sum_probs=35.8

Q ss_pred             ceEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ..+.+.|.+|.+..+ +-.+..+|  .++|++.++|.|.+++.-.... ....+.+
T Consensus        42 ~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v   96 (105)
T 2ee6_A           42 GGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLV   96 (105)
T ss_dssp             CCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETTEECTTCSEEE
T ss_pred             CcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECCEECCCcCEEE
Confidence            468899999998655 32334455  6788999999999998865433 3344443

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=85.56  E-value=2.2  Score=27.56  Aligned_cols=52  Identities=15%  Similarity=0.198  Sum_probs=34.6

Q ss_pred             eEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           15 KLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      .+.+.|.+|+|..+--. .+...|  ..+|++++.|.|.+.+.-.... ....+.+
T Consensus        42 ~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~v   97 (112)
T 2d7p_A           42 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKI   97 (112)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEEE
Confidence            78889999999754321 122344  5668889999999888766543 3445443

>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.99  E-value=5.5  Score=25.22  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             ceEEEEEECCCC--CeEE-ecccccccc--EEEEeeccCcEEEEEecCCCC-CCceEE
Q 040567           14 HKLTVKVTSPYG--NSYH-QGDHVESGN--FAFTAAEAGDYTACFWSPEHN-PPATVT   65 (162)
Q Consensus        14 ~~i~~~i~~p~g--~~v~-~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~~~   65 (162)
                      ..+.+.|.+|++  ..+. .-.+..+|.  ++|++.++|.|.+++.-.... ....+.
T Consensus        49 ~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~g~~i~gSPF~  106 (113)
T 2ds4_A           49 DNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPFT  106 (113)
T ss_dssp             CCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEESSCBCTTCSEE
T ss_pred             ceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEECCEECCCCCEE
Confidence            468888888886  2221 222234454  557888889998888766443 333433

>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X

Probab=84.90  E-value=1.3  Score=35.71  Aligned_cols=43  Identities=23%  Similarity=0.407  Sum_probs=37.9

Q ss_pred             ceEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecC
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSP   56 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~   56 (162)
                      .++.|.+++|+|.++....-...|.|.|.--.+|.|.+.|..+
T Consensus       330 ~gv~v~L~d~~G~~v~tttTd~~G~Y~F~~L~~G~Y~V~~~~P  372 (429)
T 3irp_X          330 AGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYLVEFVMP  372 (429)
T ss_dssp             TTCEEEEECTTSCEEEEEECCTTSEEEEEEEESEEEEEEECCC
T ss_pred             CCeEEEEEcCCCCEEEEEEeCCCCeEEeCCCCCCcEEEEEECC
Confidence            3799999999999887766668999999999999999999866

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=83.66  E-value=0.5  Score=30.95  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             eEEEEEECCCCCe---EEeccccccccEEEEeeccCcEEEEEecCC
Q 040567           15 KLTVKVTSPYGNS---YHQGDHVESGNFAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        15 ~i~~~i~~p~g~~---v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~   57 (162)
                      .+-|.|.+|+|+.   ++..+....+.|+-..+.+|.|++-+....
T Consensus        51 ~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~r   96 (114)
T 4dzg_A           51 NANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQMR   96 (114)
T ss_dssp             TCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECCH
T ss_pred             cEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEecc
Confidence            4667788888863   343333334689999999999999998773

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.57  E-value=3.5  Score=26.23  Aligned_cols=53  Identities=19%  Similarity=0.298  Sum_probs=34.3

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVT   65 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~   65 (162)
                      +..+.+.|.+|+|..+.-. .+..+|  .++|++.+.|.|.+.+.-.... ....+.
T Consensus        42 ~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPF~   98 (108)
T 2dj4_A           42 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFK   98 (108)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEE
T ss_pred             CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEE
Confidence            3468899999999654322 222345  4557888899999988865443 333444

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.45  E-value=1.4  Score=28.83  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=36.5

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ...+++.|.+|+|..+--. .+..+|  ..+|++++.|.|.+.+.-.... ....+.+
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v  101 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI  101 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEE
Confidence            4578999999999754321 122344  5678999999999998866544 4445443

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.12  E-value=6.5  Score=25.23  Aligned_cols=53  Identities=15%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             ceEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEEE
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTVE   67 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~   67 (162)
                      ..+.+.|.+|++..+ +-.+..+|  .++|++.++|.|.+.+.-.... ....+.+.
T Consensus        52 ~~l~v~v~~p~~~~~-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  107 (115)
T 2eea_A           52 GGLDLAIEGPSKAEI-SCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAK  107 (115)
T ss_dssp             SCEEEEEESSSCCEE-CCBCCSSSEEEEEEECSSCSCEEEEEEESSSBCTTCSEEEE
T ss_pred             CceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            468899999998544 22334456  5668889999999998855433 34444443

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=82.91  E-value=2.9  Score=28.01  Aligned_cols=43  Identities=19%  Similarity=0.216  Sum_probs=32.6

Q ss_pred             ceEEEEEECCCCCeEEecc--ccccccEEEEee---------ccCcEEEEEecC
Q 040567           14 HKLTVKVTSPYGNSYHQGD--HVESGNFAFTAA---------EAGDYTACFWSP   56 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~--~~~~g~~~f~~~---------~~G~y~~Cf~n~   56 (162)
                      ..+.+.|+|.+|++++.-.  ..+.|.+.|...         .+|.|++.+.-.
T Consensus        39 ~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           39 GFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             EEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             CEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            4799999999999998754  245677777652         258999998754

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=82.72  E-value=3.4  Score=26.71  Aligned_cols=45  Identities=16%  Similarity=0.206  Sum_probs=34.0

Q ss_pred             CCceEEEEEE-CCCCCeEEecccccc--ccEEEEe--eccCcEEEEEecC
Q 040567           12 DTHKLTVKVT-SPYGNSYHQGDHVES--GNFAFTA--AEAGDYTACFWSP   56 (162)
Q Consensus        12 ~~~~i~~~i~-~p~g~~v~~~~~~~~--g~~~f~~--~~~G~y~~Cf~n~   56 (162)
                      +-.++.+.|+ +.+|+++|++.-...  ..+.+..  ..+|+|.+=+.+.
T Consensus        47 ~~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~   96 (108)
T 3d33_A           47 PDRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGT   96 (108)
T ss_dssp             CCSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEE
T ss_pred             cCCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeC
Confidence            4558999999 889999998764332  3455655  4689999999887

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}

Probab=82.40  E-value=3.1  Score=27.46  Aligned_cols=22  Identities=9%  Similarity=-0.013  Sum_probs=19.0

Q ss_pred             CCCceEEEEEECCCCCeEEecc
Q 040567           11 PDTHKLTVKVTSPYGNSYHQGD   32 (162)
Q Consensus        11 ~~~~~i~~~i~~p~g~~v~~~~   32 (162)
                      ++++..+|.|+|++|+.++...
T Consensus        39 ~Sgq~~Df~v~d~~G~~VwrwS   60 (120)
T 3isy_A           39 STGQKFELVVYDSEHKERYRYS   60 (120)
T ss_dssp             SSSCCEEEEEECTTCCEEEETT
T ss_pred             CCCCEEEEEEECCCCCEEEEcc
Confidence            5788999999999999998554

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.25  E-value=3.9  Score=26.86  Aligned_cols=55  Identities=27%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTVE   67 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~   67 (162)
                      ...+.+.|.+|+|..+.-+ .+..+|  .++|++.+.|.|.+++.-.... ....+.+.
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  100 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM  100 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEEE
Confidence            3478999999999654322 122345  4568899999999998865543 34454443

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=81.95  E-value=5.9  Score=26.60  Aligned_cols=53  Identities=13%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             ceEEEEEECCCCCeEEeccccccc-cEEEEeeccCcEEEEEecCC-CC-CCceEEEE
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESG-NFAFTAAEAGDYTACFWSPE-HN-PPATVTVE   67 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g-~~~f~~~~~G~y~~Cf~n~~-~~-~~~~~~v~   67 (162)
                      ..+.+.|.+|++..+--.+ ..+| .++|++.++|.|.+.+.-.. .. ....+++.
T Consensus        76 g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~g~~hI~GSPF~v~  131 (138)
T 2nqc_A           76 GALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK  131 (138)
T ss_dssp             CCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             CcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEECCcccCCCCCeEEE
Confidence            3688999999987543222 2344 55688899999988877554 33 33444443

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=81.82  E-value=4.4  Score=24.67  Aligned_cols=45  Identities=22%  Similarity=0.243  Sum_probs=28.8

Q ss_pred             CceEEEEEECCCCCeEEe-ccccccc--cEEEEeeccCcEEEEEecCC
Q 040567           13 THKLTVKVTSPYGNSYHQ-GDHVESG--NFAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~   57 (162)
                      +..+.+.|.+|+|..+.- -.+..+|  ..+|++.++|.|.+++.-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            346888888999863221 1222344  45578888888888877553

>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin, ABP- 120; 2.20A {Dictyostelium discoideum} SCOP: b.1.18.10 b.1.18.10

Probab=81.26  E-value=4.4  Score=28.92  Aligned_cols=52  Identities=13%  Similarity=0.212  Sum_probs=35.5

Q ss_pred             CceEEEEEECCCCCeEE-eccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEE
Q 040567           13 THKLTVKVTSPYGNSYH-QGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVT   65 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~   65 (162)
                      ...+.+.|.+|+| .+. .-.+...|  ..+|++.+.|.|.+++.-.... ....+.
T Consensus       134 ~~~l~v~i~~p~g-~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~~I~gSPF~  189 (212)
T 1qfh_A          134 GDKFEVSITGPAE-EITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFK  189 (212)
T ss_dssp             CCCEEEEEEECCS-EEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTEECBTCSEE
T ss_pred             CCcEEEEEECCCC-ceeeEEEECCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeE
Confidence            4579999999999 332 21233466  5778999999999999876543 333444

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=80.86  E-value=5.1  Score=24.76  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             CceEEEEEECCCCCeEE-eccccccc--cEEEEeeccCcEEEEEecCC
Q 040567           13 THKLTVKVTSPYGNSYH-QGDHVESG--NFAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~   57 (162)
                      ...+.+.|.+|+|..+. .-.+..+|  ..+|++.+.|.|.+++.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            34688888999885321 11122344  45578888888888877543

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=80.80  E-value=7.8  Score=25.04  Aligned_cols=53  Identities=19%  Similarity=0.374  Sum_probs=35.0

Q ss_pred             CceEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           13 THKLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ...+.+.|.+|.+..+.- .+..+|  .++|++.++|.|.+++.-.... ....+.+
T Consensus        48 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v  103 (119)
T 2k9u_A           48 AGGLSIAVEGPSKAEIAF-EDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVV  103 (119)
T ss_dssp             SEEEEEEEESSSCCEEEE-ECCSSSEEEEEEECCSSEEEEEEEEETSCBCSSCSEEE
T ss_pred             CCcEEEEEeCCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            346888899998843322 223455  5678899999999998865443 3445444

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=80.66  E-value=6.1  Score=24.35  Aligned_cols=42  Identities=24%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             eEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCC
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~   57 (162)
                      .+.+.|.+|.+..+.-. +..+|  .++|++.++|.|.+++.-..
T Consensus        35 ~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g   78 (94)
T 2w0p_A           35 GLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNE   78 (94)
T ss_dssp             CEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             cEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            57888889988544322 23345  45688888999998887553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	96.65
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.7
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	89.99
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.92
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	87.95
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.83
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.38
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.3
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	86.1
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.83
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	85.71
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.48
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	85.2
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	85.19
d1vlfn1	79	Transhydroxylase beta subunit, BthL, C-terminal do	82.78
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	82.51
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	80.97
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	80.11

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0012  Score=42.39  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=24.5

Q ss_pred             EEEeeccCcEEEEEecCCCC-CCceEEEEEEe
Q 040567           40 AFTAAEAGDYTACFWSPEHN-PPATVTVEFEW   70 (162)
Q Consensus        40 ~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~~~~   70 (162)
                      +|.++++|.|.+||+|++|. ..|.+...+.+
T Consensus        78 ~~~~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v  109 (119)
T d1olma2          78 TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV  109 (119)
T ss_dssp             EEECCSCEEEEEEEECTTCCCCSEEEEEEEEE
T ss_pred             EEEcCCCEEEEEEEeCCcceEEeeEEEEEEEE
Confidence            57788999999999999986 56666655554

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.17  Score=30.73  Aligned_cols=52  Identities=19%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             eEEEEEECCCCCeEEec-ccccccc--EEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           15 KLTVKVTSPYGNSYHQG-DHVESGN--FAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      .+++.|.+|+|+.+--. ....+|.  .+|++.+.|.|.+++.-.... .+..+.+
T Consensus        38 ~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v   93 (102)
T d2d7ma1          38 LLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRI   93 (102)
T ss_dssp             CEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             cEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEE
Confidence            68999999999864322 2223454  579999999999998755433 3445443

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.34  Score=28.78  Aligned_cols=43  Identities=26%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             ceEEEEEECCCCCeEEecccccccc--EEEEeeccCcEEEEEecCC
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESGN--FAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~   57 (162)
                      ..+++.|.+|++..+--.+ ..+|.  .+|++.+.|.|.+.+.-..
T Consensus        33 g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g   77 (92)
T d2w0pa1          33 GGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNE   77 (92)
T ss_dssp             CCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            3688999999987654332 34564  5799999999999886554

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.94  Score=26.03  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             CceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEEE
Q 040567           13 THKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTVE   67 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~   67 (162)
                      .-++.+.|++|+|..+-.. .+..+|  ..+|++.+.|.|.+=+...... ....+++.
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~~I~gSPf~v~   72 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   72 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCEECCCCCEEEE
Confidence            3479999999999875322 122345  5678889999998877666543 34454443

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.95  E-value=0.91  Score=27.66  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=35.0

Q ss_pred             CceEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           13 THKLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        13 ~~~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      +..+.+.|.+|.+.+-..-.+..+|  ..+|++.+.|.|.+.+.-.... ....+++
T Consensus        30 ~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~~I~gSPF~v   86 (108)
T d1qfha2          30 GDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQ   86 (108)
T ss_dssp             CCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTEECBTCSEEE
T ss_pred             CCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECCEECCCCCEEE
Confidence            3478899999988653333333455  4568889999999888755433 3334443

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=1.1  Score=26.58  Aligned_cols=52  Identities=19%  Similarity=0.345  Sum_probs=35.1

Q ss_pred             eEEEEEECCCCCeEEecccccccc--EEEEeeccCcEEEEEecCCCC-CCceEEEE
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESGN--FAFTAAEAGDYTACFWSPEHN-PPATVTVE   67 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v~   67 (162)
                      ++++.|.+|++..+.-.+ ..+|.  .+|++.+.|.|.+.+.-.... ....+++.
T Consensus        36 ~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2di8a1          36 GISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVK   90 (98)
T ss_dssp             CEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEE
T ss_pred             ceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            688999999887654332 33454  568999999999988655433 34454443

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.38  E-value=0.7  Score=27.50  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             eEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEec
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWS   55 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n   55 (162)
                      .+.+.|.+|+|..+--..+...-..+|++.+.|.|.+.+.-
T Consensus        36 ~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~   76 (97)
T d2nqca1          36 ALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKY   76 (97)
T ss_dssp             CEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEE
T ss_pred             ceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEE
Confidence            78999999999776543332223578999999999999853

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.30  E-value=0.96  Score=26.99  Aligned_cols=51  Identities=16%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             eEEEEEECCCCCeEEec-ccccccc--EEEEeeccCcEEEEEecCCCC-CCceEE
Q 040567           15 KLTVKVTSPYGNSYHQG-DHVESGN--FAFTAAEAGDYTACFWSPEHN-PPATVT   65 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~~~   65 (162)
                      .+++.|.+|+|..+--. .+...|.  .+|++.+.|.|.+.+.-.... ....++
T Consensus        35 ~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~   89 (99)
T d2d7pa1          35 VIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFK   89 (99)
T ss_dssp             CEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEE
T ss_pred             eEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEECCCCCEE
Confidence            68999999999865322 2234454  568999999999988776544 334444

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=1.2  Score=27.07  Aligned_cols=53  Identities=28%  Similarity=0.381  Sum_probs=36.7

Q ss_pred             ceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           14 HKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ..+.+.|.+|+|+.+--. .+..+|  ..+|++++.|.|++.+.-.... ....+.+
T Consensus        36 g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v   92 (111)
T d2dmba1          36 GKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTV   92 (111)
T ss_dssp             CCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEE
Confidence            368999999999875422 223455  4678999999999998866544 3444443

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=1.3  Score=26.38  Aligned_cols=52  Identities=19%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             ceEEEEEECCCCCeEEec-cccccc--cEEEEeeccCcEEEEEecCCCC-CCceEE
Q 040567           14 HKLTVKVTSPYGNSYHQG-DHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVT   65 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~-~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~   65 (162)
                      ..+++.|.+|+|..+--. .+..+|  ..+|++.+.|.|++-+.-.... .+..++
T Consensus        36 g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~   91 (101)
T d2dj4a1          36 APLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFK   91 (101)
T ss_dssp             CCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEE
T ss_pred             CCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEE
Confidence            368999999999875432 223445  4568889999999887655433 344444

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.71  E-value=0.72  Score=27.67  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             ceEEEEEECCCCCeEEec-ccccccc--EEEEeeccCcEEEEEecCC
Q 040567           14 HKLTVKVTSPYGNSYHQG-DHVESGN--FAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~-~~~~~g~--~~f~~~~~G~y~~Cf~n~~   57 (162)
                      ..+.+.|.+|+|..+--. .+..+|.  .+|++.+.|.|.+.+.-..
T Consensus        44 ~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g   90 (104)
T d1qfha1          44 DPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG   90 (104)
T ss_dssp             CCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred             ceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            368999999998765322 2234554  4678888899988876553

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.36  Score=28.42  Aligned_cols=44  Identities=27%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             eEEEEEECCCCCeEEecc-cccccc--EEEEeeccCcEEEEEecCCC
Q 040567           15 KLTVKVTSPYGNSYHQGD-HVESGN--FAFTAAEAGDYTACFWSPEH   58 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~-~~~~g~--~~f~~~~~G~y~~Cf~n~~~   58 (162)
                      ++++.|.+|+|+.+--.- ...+|.  .+|++.+.|.|.+-+.-...
T Consensus        25 ~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g~   71 (88)
T d2j3sa2          25 DMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQ   71 (88)
T ss_dssp             CEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETTE
T ss_pred             cEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECCE
Confidence            699999999998865432 234454  46899999999888775543

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=1.4  Score=25.82  Aligned_cols=42  Identities=17%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             ceEEEEEECCCCCeEEecccccccc--EEEEeeccCcEEEEEecC
Q 040567           14 HKLTVKVTSPYGNSYHQGDHVESGN--FAFTAAEAGDYTACFWSP   56 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~   56 (162)
                      ..+.+.|.+|++..+.-.. ..+|.  .+|++++.|.|.+-+.-.
T Consensus        34 g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~   77 (92)
T d2bp3a1          34 GGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYN   77 (92)
T ss_dssp             EEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEET
T ss_pred             CceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEEC
Confidence            3789999999997654333 24454  458999999998876544

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=0.94  Score=26.77  Aligned_cols=44  Identities=23%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             eEEEEEECCCCCeEE-eccccccc--cEEEEeeccCcEEEEEecCCC
Q 040567           15 KLTVKVTSPYGNSYH-QGDHVESG--NFAFTAAEAGDYTACFWSPEH   58 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~-~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~   58 (162)
                      .+++.|.+|+|..+- .-.+...|  ..+|++++.|.|++++.-...
T Consensus        38 ~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g~   84 (96)
T d1v05a_          38 MMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDE   84 (96)
T ss_dssp             CEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETTE
T ss_pred             ceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECCE
Confidence            689999999996643 22233444  467899999999999876543

>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Cna protein B-type domain
family: Cna protein B-type domain
domain: Transhydroxylase beta subunit, BthL, C-terminal domain
species: Pelobacter acidigallici [TaxId: 35816]

Probab=82.78  E-value=0.9  Score=26.09  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             eEEEEEECCCCCeEEeccccccccEEEEeeccCcEEEEEecCC
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESGNFAFTAAEAGDYTACFWSPE   57 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g~~~f~~~~~G~y~~Cf~n~~   57 (162)
                      +..+.++++ |..+....-...|.|.|..-.+|.|.+-++-..
T Consensus        17 gA~V~L~~~-~~~v~~t~Td~~G~F~f~~l~~G~Y~l~is~~G   58 (79)
T d1vlfn1          17 GAKVVLKSG-GKEVASAETNFFGEFKFDALDNGEYTVEIDADG   58 (79)
T ss_dssp             TCEEEEEET-TEEEEEEECCTTSEEEEEEECSEEEEEEEEETT
T ss_pred             ccEEEEECC-CCeEEeeEECCCCcEEEEecCCCCEEEEEEEec
Confidence            567778875 445555444578999999989999999887553

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=2.4  Score=25.77  Aligned_cols=51  Identities=18%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             eEEEEEECCCCCeEEeccccccc--cEEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESG--NFAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      .+.+.|.+|++..+.-.+ ...|  ..+|++.+.|.|.+.+.-.... ....+++
T Consensus        56 ~l~v~i~~p~~~~~~v~~-~~dG~y~v~ytP~~~G~y~i~V~~~g~~i~gSPf~v  109 (118)
T d2di9a1          56 GLGLTVEGPCEAKIECSD-NGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKA  109 (118)
T ss_dssp             CEEEEECSSSCCEEEEEE-CSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEE
T ss_pred             ccEEEEecCCceEEEEEE-CCCCEEEEEEEeCCcEeEEEEEEECCEECCCCCEEE
Confidence            688999999987653322 2344  4678999999999998866544 3445443

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.97  E-value=1.6  Score=25.75  Aligned_cols=51  Identities=20%  Similarity=0.298  Sum_probs=34.1

Q ss_pred             eEEEEEECCCCCeEEecccccccc--EEEEeeccCcEEEEEecCCCC-CCceEEE
Q 040567           15 KLTVKVTSPYGNSYHQGDHVESGN--FAFTAAEAGDYTACFWSPEHN-PPATVTV   66 (162)
Q Consensus        15 ~i~~~i~~p~g~~v~~~~~~~~g~--~~f~~~~~G~y~~Cf~n~~~~-~~~~~~v   66 (162)
                      ++.+.|.+|++..+--.. ..+|.  .+|++.+.|.|.+.+.-.... ....+++
T Consensus        36 ~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v   89 (98)
T d2dica1          36 GLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRV   89 (98)
T ss_dssp             CEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             CcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            688999999887543222 24454  558899999999998765433 3344443

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.11  E-value=1.9  Score=25.49  Aligned_cols=45  Identities=18%  Similarity=0.185  Sum_probs=32.4

Q ss_pred             ceEEEEEECCCCCeEEe-ccccccc--cEEEEeeccCcEEEEEecCCC
Q 040567           14 HKLTVKVTSPYGNSYHQ-GDHVESG--NFAFTAAEAGDYTACFWSPEH   58 (162)
Q Consensus        14 ~~i~~~i~~p~g~~v~~-~~~~~~g--~~~f~~~~~G~y~~Cf~n~~~   58 (162)
                      ..+.+.|.+|+|..+-- -.+..+|  ..+|++.+.|.|++.+.-...
T Consensus        35 ~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~   82 (100)
T d2diaa1          35 GALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGE   82 (100)
T ss_dssp             CCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTE
T ss_pred             CcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECCE
Confidence            36899999999986432 2223444  567899999999999876543