Citrus Sinensis ID: 040570

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHPV
Secondary Structure (PSIPRED)
cccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEcccHHHHHHHcccccEEEEcccccccccccccEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEcccccccccccHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEEEEccccccEEEEEEEcHHHHHHHHHcccEEEEEcccccccccccccEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEccccccccc
Coil and Loop (DISEMBL)
MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVdmsknnvrpkdVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDctyktnrydmplleiagvtsidLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTdrelawhpv
Flexible Loop (DISEMBL)
MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHvlkkrnmhnatTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIvtdrelawhpv
Low Complexity Region (SEG)
MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHPV
Disordered region (IsUnstruct)
*****DWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAW***
Disordered Region (DISOPRED)
*ENNDDWALIVKYGFHNHLATQYLE**********************NVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHP*
Disordered Region (DISEMBL)
MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHPV
Disordered Region (DISPRO)
***NDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAW***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
297744547	701	unnamed protein product [Vitis vinifera]	0.804	0.241	0.550	6e-49
147776975	773	hypothetical protein VITISV_001036 [Viti	0.861	0.234	0.485	1e-46
356529783	1403	PREDICTED: uncharacterized protein LOC10	0.971	0.145	0.418	5e-39
356499731	878	PREDICTED: uncharacterized protein LOC10	0.952	0.227	0.428	5e-39
356536595	877	PREDICTED: uncharacterized protein LOC10	0.952	0.228	0.418	2e-37
356522881	592	PREDICTED: uncharacterized protein LOC10	0.976	0.346	0.420	2e-37
356554576	388	PREDICTED: protein FAR1-RELATED SEQUENCE	0.976	0.528	0.410	3e-37
144923508	470	transposase, putative [Medicago truncatu	0.971	0.434	0.385	2e-36
356536993	426	PREDICTED: protein FAR1-RELATED SEQUENCE	0.976	0.481	0.400	3e-36
124360682	280	Ovarian tumour, otubain, putative [Medic	0.957	0.717	0.366	1e-35

>gi|297744547|emb|CBI37809.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 130/169 (76%)

Query: 36  EKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMS 95
           E+  +L+D+SK+ ++PK++L+ LK+R+  N TTI+ IYNAR K+K+ E  G S MQ LM+
Sbjct: 2   EEIGILIDLSKSQMKPKEILNTLKERDGLNCTTIKGIYNARHKHKLNENAGGSLMQQLMN 61

Query: 96  KLIEQKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIA 155
           KL+E KYIE H++D   NCV+ L  AHPS++ELL+AFPRVLIMDCTY+TN+Y +PLLE+ 
Sbjct: 62  KLMEFKYIEWHRNDEHNNCVRDLMFAHPSSLELLRAFPRVLIMDCTYRTNKYQLPLLEVV 121

Query: 156 GVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRE 204
           GVTS + TFSV   YL  + E  + WALERL+S++++ ML  V++TDRE
Sbjct: 122 GVTSTEKTFSVAFAYLGSEREEAHTWALERLRSMIDDAMLPRVVMTDRE 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776975|emb|CAN70078.1| hypothetical protein VITISV_001036 [Vitis vinifera]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 132/200 (66%), Gaps = 19/200 (9%)

Query: 5   DDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMH 64
           D+W L+VK G HNH   Q++EGHSFAG L+ E+  +L+D+SK+ ++PK++L+ LK+R+  
Sbjct: 101 DEWTLVVKCGTHNHPGGQHVEGHSFAGRLSMEEIGILIDLSKSQMKPKEILNTLKERDGL 160

Query: 65  NATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPS 124
           N TTI+ IYNAR K+K  E  G S MQ LM+KL+E KYIE H++D   NCV+ L  AHPS
Sbjct: 161 NCTTIKGIYNARHKHKANENAGGSLMQQLMNKLMEFKYIEWHRNDEHNNCVRDLMFAHPS 220

Query: 125 AIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALE 184
           ++ELL+AFPRV+                   GVTS + TFSV   YL  + E    WALE
Sbjct: 221 SLELLRAFPRVV-------------------GVTSTEKTFSVAFAYLGSEREEAXTWALE 261

Query: 185 RLKSIMEENMLASVIVTDRE 204
           RL+S ++  ML  V++TDRE
Sbjct: 262 RLRSXIDXAMLPRVVMTDRE 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529783|ref|XP_003533467.1| PREDICTED: uncharacterized protein LOC100782358 [Glycine max]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/208 (41%), Positives = 135/208 (64%), Gaps = 4/208 (1%)

Query: 1    MENNDDWALIVKYGFHNH-LATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLK 59
            +  ++ W + V  G+HNH L    + GHS+AG L  E+ +L++DM+K  V P+++L  LK
Sbjct: 887  LNKDEGWIVKVMCGYHNHDLGETLVVGHSYAGRLTAEEKSLVIDMTKKMVEPRNILLTLK 946

Query: 60   KRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALF 119
              N  N TTIR IYNARQ Y+  ++   ++MQ L+  L   +Y+   +   D++ ++ +F
Sbjct: 947  DHN--NDTTIRHIYNARQAYRSSQKGPRTEMQHLLKLLEHDQYVCWSRKVDDSDAIRDIF 1004

Query: 120  LAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNY 179
             AHP AI+LL +F  VL +D TYK NRY +PLLEI GVTS +LTFSV   Y++    +N+
Sbjct: 1005 WAHPDAIKLLGSFHTVLFLDNTYKVNRYQLPLLEIVGVTSTELTFSVAFAYMESDEVDNF 1064

Query: 180  IWALERLKS-IMEENMLASVIVTDRELA 206
             WAL++L+  I+++N +  VI+T R++A
Sbjct: 1065 TWALQKLRELIVKDNEMPPVIITVRDIA 1092

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499731|ref|XP_003518690.1| PREDICTED: uncharacterized protein LOC100805365 [Glycine max]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 134/203 (66%), Gaps = 3/203 (1%)

Query: 5   DDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMH 64
           + W + V  G HNH   + L GH +AG L+ E+ +L+  ++K+ ++PKD+L  LK  NM 
Sbjct: 127 EGWIVKVMCGCHNHDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMG 186

Query: 65  NATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPS 124
           N TTI+ IYNARQ Y+  ++   S+MQ L+  L   +Y+  H+   D++ ++ +F  HP 
Sbjct: 187 NVTTIKQIYNARQAYRSSKK--GSEMQHLLKLLEHDRYVYWHRKVDDSDAIRDIFWTHPD 244

Query: 125 AIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALE 184
           AI+LL AF  VLI+D TYKT RY +PLLEI GVTS +LTFSV   +++ +  +N+ WAL+
Sbjct: 245 AIKLLGAFNTVLIIDSTYKTTRYQLPLLEIVGVTSTELTFSVAFAFVESERADNFTWALQ 304

Query: 185 RLKS-IMEENMLASVIVTDRELA 206
           +L+  I++E+ +  VIVT  ++A
Sbjct: 305 KLRGLIVKEDDMPQVIVTVGDIA 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536595|ref|XP_003536822.1| PREDICTED: uncharacterized protein LOC100800409 [Glycine max]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 129/203 (63%), Gaps = 3/203 (1%)

Query: 5   DDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMH 64
           + W + V  G HNH   + L GH +AG L+ E+ +L+  ++K+ ++PKD+L  LK  NM 
Sbjct: 124 EGWIVKVMCGCHNHDLEETLVGHPYAGRLSAEEKSLVDALTKSMMKPKDILLTLKDHNMG 183

Query: 65  NATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPS 124
           N TTI+ IYNARQ Y  R     S+MQ L+  L   +Y+  H+   D++ ++ +F  HP 
Sbjct: 184 NVTTIKQIYNARQAY--RSSKKGSEMQHLLKLLEHDRYVYWHRKVDDSDAIRDIFWTHPD 241

Query: 125 AIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALE 184
           AI+LL AF  VL++D TYKT RY +PLLEI GVTS +LTFS    +++ +   N+ WAL+
Sbjct: 242 AIKLLGAFNTVLVIDSTYKTTRYQLPLLEIVGVTSTELTFSAAFAFVESERAENFTWALK 301

Query: 185 RLKS-IMEENMLASVIVTDRELA 206
           +L+  I +++ +  VIVT  ++A
Sbjct: 302 KLRGLIAKDDDMPQVIVTVGDIA 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522881|ref|XP_003530071.1| PREDICTED: uncharacterized protein LOC100787990 [Glycine max]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/207 (42%), Positives = 127/207 (61%), Gaps = 2/207 (0%)

Query: 1   MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKK 60
           +   + WA+ +  G HNH   + L G+ +AG L  +  N++VDM+K+NV+P+++L  LK+
Sbjct: 54  VHGGEGWAVKLICGIHNHELAKTLVGNPYAGRLTDDDKNIIVDMTKSNVKPRNILLTLKE 113

Query: 61  RNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFL 120
            N  + TTI+ IYNAR  Y+   +   S+MQ LM  L   +YI  H+   D + V+ LF 
Sbjct: 114 HNSSSCTTIKQIYNARSAYRSSIRGDDSEMQHLMRLLERDQYIHWHRLK-DEDVVRDLFW 172

Query: 121 AHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYI 180
            HP A++L  A   + ++D TYKTNRY + LL+I GVT I +TFS    YL+ +  NN +
Sbjct: 173 CHPDAVKLCNACHLIFLIDSTYKTNRYMLSLLDIVGVTPIGMTFSAGFAYLEGERVNNLV 232

Query: 181 WALERLKSIMEEN-MLASVIVTDRELA 206
           WALER + +   N  L  VIVTDR+LA
Sbjct: 233 WALERFRGLFLRNDRLPLVIVTDRDLA 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554576|ref|XP_003545621.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  160 bits (406), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 126/207 (60%), Gaps = 2/207 (0%)

Query: 1   MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKK 60
           +   + WA+ +  G HNH   + L GH +AG L  ++ N++ +M+K+NV+P+++L  LK+
Sbjct: 99  VHGGEGWAVKLICGIHNHELAKTLVGHPYAGRLTDDEKNIIANMTKSNVKPRNILLTLKE 158

Query: 61  RNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFL 120
            N  + TTI+ IYNAR  Y+   +   ++MQ  M  L   +YI  H+   D + V+ LF 
Sbjct: 159 HNSSSCTTIKQIYNARSAYRSSIRGDDTEMQHPMRLLERDQYIHWHRLK-DEDVVRDLFW 217

Query: 121 AHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYI 180
            HP A++L  A   V ++D TYKTNRY +PLL+I GVT   +TFS    YL+ +  NN +
Sbjct: 218 CHPDAVKLCNACHLVFLIDSTYKTNRYRLPLLDIVGVTPTGMTFSAGFAYLEGERVNNLV 277

Query: 181 WALERLKSIMEEN-MLASVIVTDRELA 206
           WALER + +   N  L  VIVTDR+LA
Sbjct: 278 WALERFRGLFLRNDRLPVVIVTDRDLA 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|144923508|gb|ABE80136.2| transposase, putative [Medicago truncatula]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 128/205 (62%), Gaps = 1/205 (0%)

Query: 1   MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKK 60
           +  N+ W L++  G HNH   +Y+ GH  +G L ++   ++ D++ ++V+PK +L  LKK
Sbjct: 121 VRENNFWKLVILNGVHNHEMVRYVAGHLLSGRLMEDDKKIVHDLTDSSVKPKSILTNLKK 180

Query: 61  RNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFL 120
           +   + T I+ +YN R K+K  ++   ++MQ L+SKL E  Y+   +   ++  V+ +F 
Sbjct: 181 KRKESITNIKQVYNERHKFKKAKRDDLTEMQYLISKLEENVYVHYVREKKESQNVQDIFW 240

Query: 121 AHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYI 180
            HP++++L   FP VLIMD TYKTN Y MPL EI GVTS  LT+SV   ++  + E+N+ 
Sbjct: 241 THPTSVKLFNNFPTVLIMDSTYKTNLYRMPLFEIVGVTSTYLTYSVGFAFMTSEKEDNFT 300

Query: 181 WALERLKSIMEENM-LASVIVTDRE 204
           WAL+ L  ++E N  +  V+VTDR+
Sbjct: 301 WALQMLLKLLEPNSDMPKVVVTDRD 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536993|ref|XP_003537016.1| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]

 Score =  157 bits (397), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 124/207 (59%), Gaps = 2/207 (0%)

Query: 1   MENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKK 60
           +   + W + +  G HNH   + L GH +AG L +++ N++ DM+K+NV+P+++L  LKK
Sbjct: 111 VHGGEGWMVKLICGIHNHELAKTLVGHPYAGRLTEDEKNIIADMTKSNVKPRNILLTLKK 170

Query: 61  RNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFL 120
            N ++ TTI+ IYNAR  Y+   +   ++M+ LM  L   +YI  H+   D + V+ LF 
Sbjct: 171 YNSNSCTTIKQIYNARSAYRSSIRGDDTKMKHLMRLLERDQYIHWHRLK-DQDVVRDLFW 229

Query: 121 AHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYI 180
            HP A++L  A   V ++D TYKTNRY  P L+  GVT   + FS    YL+ +  NN +
Sbjct: 230 CHPDAVKLCNACHLVFLIDSTYKTNRYKFPFLDFVGVTPTGMNFSAGFAYLEGECMNNLV 289

Query: 181 WALERLKSIMEEN-MLASVIVTDRELA 206
           WALER + +   N  L  VIVTDR+LA
Sbjct: 290 WALERFRGLFLRNDHLHVVIVTDRDLA 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360682|gb|ABN08671.1| Ovarian tumour, otubain, putative [Medicago truncatula]

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 123/202 (60%), Gaps = 1/202 (0%)

Query: 6   DWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHN 65
           +W L +  G HNH     LEGH  AG L ++   ++ D++K+ + P+++L  LK +  H 
Sbjct: 12  EWGLNILNGVHNHPMEPALEGHILAGRLKEDDKKIVRDLTKSKMLPRNILIHLKNQRPHC 71

Query: 66  ATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVKALFLAHPSA 125
            T ++ +YN RQ+     +     +Q L+SKL E  Y    ++ +++N ++ +F AHP++
Sbjct: 72  MTNVKQVYNERQQIWKANRGDKKPLQFLISKLEEHNYTYYSRTQLESNTIEDIFWAHPTS 131

Query: 126 IELLQAFPRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALER 185
           I+L   FP +L+MD TYKTN Y MP+ E+ GVTS DLT+SV   ++  + E N++W L  
Sbjct: 132 IKLFNNFPTILVMDSTYKTNMYRMPMFEVVGVTSTDLTYSVGFGFMTHEKEENFVWVLTM 191

Query: 186 LKSIMEENM-LASVIVTDRELA 206
           L+ ++   M +  VIVTDR+++
Sbjct: 192 LRKLLSSKMNMPKVIVTDRDMS 213

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.72
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	98.17
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	94.39
COG3328	379	Transposase and inactivated derivatives [DNA repli	94.22
PF08069	60	Ribosomal_S13_N: Ribosomal S13/S15 N-terminal doma	93.93
PRK08561	151	rps15p 30S ribosomal protein S15P; Reviewed	90.56
PF13936	44	HTH_38: Helix-turn-helix domain; PDB: 2W48_A.	88.37
PTZ00072	148	40S ribosomal protein S13; Provisional	86.84
PF13610	140	DDE_Tnp_IS240: DDE domain	86.81

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=8.1e-42  Score=306.31  Aligned_cols=186  Identities=17%  Similarity=0.210  Sum_probs=152.1

Q ss_pred             CCCCCcEEEEecCCCCCCCCCCCccccccCCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCC---CcchHhHHhHHHHH
Q 040570            2 ENNDDWALIVKYGFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMH---NATTIRAIYNARQK   78 (210)
Q Consensus         2 ~~~~~W~v~~~~~~HNH~~~~~~~~h~~~R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~---~~~t~~di~N~~~k   78 (210)
                      ..+|+|.|+.++.+|||||.++...+                     ..++.++..+.+..++   ...+..|..|...+
T Consensus       170 ~~~gkW~V~~fv~eHNH~L~p~~~~~---------------------~~~r~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  228 (846)
T PLN03097        170 RPDGKWVIHSFVKEHNHELLPAQAVS---------------------EQTRKMYAAMARQFAEYKNVVGLKNDSKSSFDK  228 (846)
T ss_pred             cCCCeEEEEEEecCCCCCCCCccccc---------------------hhhhhhHHHHHhhhhccccccccchhhcchhhH
Confidence            46899999999999999998664311                     1123333333332221   12344566666555


Q ss_pred             HhhhhcccchHHHHHHHHhhc----cceeEEEeeecCCCceEEEEEeChhhHHHHHhCCcEEEEecccccCcCCCceeeE
Q 040570           79 YKVREQVGHSQMQLLMSKLIE----QKYIERHKSDVDTNCVKALFLAHPSAIELLQAFPRVLIMDCTYKTNRYDMPLLEI  154 (210)
Q Consensus        79 ~~~~~~~g~~~~~~L~~~l~~----~~~~~~~~~~d~~~~~~~lf~a~~~~~~~~~~f~~vl~~D~Ty~tn~~~~pl~~~  154 (210)
                      .++..+. ..+++.|+++|++    +|.|||.+++|++|++++|||+++.|+..|..|||||.||+||+||+|+|||+.|
T Consensus       229 ~r~~~~~-~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~F  307 (846)
T PLN03097        229 GRNLGLE-AGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALF  307 (846)
T ss_pred             HHhhhcc-cchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEEE
Confidence            5544443 3478889988864    4678899999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCCCC
Q 040570          155 AGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHPV  210 (210)
Q Consensus       155 ~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~~~  210 (210)
                      +|+|+|+++++|||||+.+|+.|||.|+|++|+++|+ ++.|++||||+|.||.+|
T Consensus       308 vGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~-gk~P~tIiTDqd~am~~A  362 (846)
T PLN03097        308 VGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMG-GQAPKVIITDQDKAMKSV  362 (846)
T ss_pred             EEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhC-CCCCceEEecCCHHHHHH
Confidence            9999999999999999999999999999999999997 799999999999999765

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.72  E-value=6.1e-18  Score=115.32  Aligned_cols=68  Identities=35%  Similarity=0.520  Sum_probs=63.7

Q ss_pred             cccccCcCCCceee---EEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCCCC
Q 040570          140 CTYKTNRYDMPLLE---IAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHPV  210 (210)
Q Consensus       140 ~Ty~tn~~~~pl~~---~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~~~  210 (210)
                      +||+||+| +|++.   ++|+|++++++++||+++++|++++|.|+|+.+++.+.. . |++||||+|.|+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-~-p~~ii~D~~~~~~~A   71 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-K-PKVIISDFDKALINA   71 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-C-ceeeeccccHHHHHH
Confidence            69999999 88886   999999999999999999999999999999999999974 5 999999999999765

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=98.17  E-value=1.3e-06  Score=74.23  Aligned_cols=141  Identities=12%  Similarity=0.043  Sum_probs=102.3

Q ss_pred             cCCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeEEEeee
Q 040570           30 AGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSD  109 (210)
Q Consensus        30 ~R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~~~~~~  109 (210)
                      .++.+++.-+.|..|...|+++++|-..|.+.+|+..+....|.+.......           -++.++..+        
T Consensus        96 y~r~~~~l~~~i~~ly~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~-----------~~~~w~~R~--------  156 (381)
T PF00872_consen   96 YQRREDSLEELIISLYLKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDE-----------EVEAWRNRP--------  156 (381)
T ss_pred             hhhhhhhhhhhhhhhhccccccccccchhhhhhcccccCchhhhhhhhhhhh-----------hHHHHhhhc--------
Confidence            4444566667788889999999999999999888444555556555444321           112222211        


Q ss_pred             cCCCceEEEEEeChhhHHHHHhC-CcEEEEecccccCc-----CCCceeeEEeeecCCceEEEEEEeecCccchhHHHHH
Q 040570          110 VDTNCVKALFLAHPSAIELLQAF-PRVLIMDCTYKTNR-----YDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWAL  183 (210)
Q Consensus       110 d~~~~~~~lf~a~~~~~~~~~~f-~~vl~~D~Ty~tn~-----~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l  183 (210)
                                         +... -++|.+|++|-+-+     -+.++++++|++..|+-.++|+.....|+.++|.-+|
T Consensus       157 -------------------L~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l  217 (381)
T PF00872_consen  157 -------------------LESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFL  217 (381)
T ss_pred             -------------------cccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecc
Confidence                               1111 13788899987644     2467899999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCeEEEecCcccCCCC
Q 040570          184 ERLKSIMEENMLASVIVTDRELAWHPV  210 (210)
Q Consensus       184 ~~~~~~~~~~~~p~~iitD~d~al~~~  210 (210)
                      +.|++-  .-..|..||+|...+|.+|
T Consensus       218 ~~L~~R--Gl~~~~lvv~Dg~~gl~~a  242 (381)
T PF00872_consen  218 QDLKER--GLKDILLVVSDGHKGLKEA  242 (381)
T ss_pred             hhhhhc--cccccceeecccccccccc
Confidence            998764  2356899999999999765

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=94.39  E-value=0.24  Score=34.33  Aligned_cols=71  Identities=13%  Similarity=-0.044  Sum_probs=45.5

Q ss_pred             cEEEEeccccc-CcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCC-CeEEEecCcccC
Q 040570          134 RVLIMDCTYKT-NRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENML-ASVIVTDRELAW  207 (210)
Q Consensus       134 ~vl~~D~Ty~t-n~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~-p~~iitD~d~al  207 (210)
                      +.+.+|.+... ...+...+..+.+|...+-.. ++.+-..++.+.+..+|.......+  .. |++|+||+..+.
T Consensus         7 ~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~--~~~p~~i~tD~g~~f   79 (120)
T PF00665_consen    7 ERWQIDFTPMPIPDKGGRVYLLVFIDDYSRFIY-AFPVSSKETAEAALRALKRAIEKRG--GRPPRVIRTDNGSEF   79 (120)
T ss_dssp             TEEEEEEEEETGGCTT-CEEEEEEEETTTTEEE-EEEESSSSHHHHHHHHHHHHHHHHS---SE-SEEEEESCHHH
T ss_pred             CEEEEeeEEEecCCCCccEEEEEEEECCCCcEE-EEEeecccccccccccccccccccc--cccceeccccccccc
Confidence            58889988433 344556777777777766554 5666556566666666665555443  44 999999998764

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=94.22  E-value=0.45  Score=40.50  Aligned_cols=129  Identities=12%  Similarity=0.021  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHhhhhcccchHHHHHHHHhhccceeEEEeeecCCCceE
Q 040570           37 KSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKVREQVGHSQMQLLMSKLIEQKYIERHKSDVDTNCVK  116 (210)
Q Consensus        37 ~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~~~~~g~~~~~~L~~~l~~~~~~~~~~~~d~~~~~~  116 (210)
                      .-..|..|...|+++++|-..+++.++. .+. .+.+......          +.+-+..++..+-  .           
T Consensus        89 ~~~~v~~~y~~gv~Tr~i~~~~~~~~~~-~~s-~~~iS~~~~~----------~~e~v~~~~~r~l--~-----------  143 (379)
T COG3328          89 LDLPVLSMYAKGVTTREIEALLEELYGH-KVS-PSVISVVTDR----------LDEKVKAWQNRPL--G-----------  143 (379)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHhhCc-ccC-HHHhhhHHHH----------HHHHHHHHHhccc--c-----------
Confidence            3445667889999999999999988753 222 2222222211          1111222222211  0           


Q ss_pred             EEEEeChhhHHHHHhCCcEEEEecccccCc--CCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCC
Q 040570          117 ALFLAHPSAIELLQAFPRVLIMDCTYKTNR--YDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENM  194 (210)
Q Consensus       117 ~lf~a~~~~~~~~~~f~~vl~~D~Ty~tn~--~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~  194 (210)
                                     --.++.+|++|.+=+  -+..++.++|++..|+-.++++.+-.+|. ..|.-++.-|+.- + -.
T Consensus       144 ---------------~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~r-g-l~  205 (379)
T COG3328         144 ---------------DYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNR-G-LS  205 (379)
T ss_pred             ---------------CceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhc-c-cc
Confidence                           012678899988777  56778899999999999999999999998 6665444444332 1 12


Q ss_pred             CCeEEEecCcccCC
Q 040570          195 LASVIVTDRELAWH  208 (210)
Q Consensus       195 ~p~~iitD~d~al~  208 (210)
                      .-..+++|.-.++-
T Consensus       206 ~v~l~v~Dg~~gl~  219 (379)
T COG3328         206 DVLLVVVDGLKGLP  219 (379)
T ss_pred             ceeEEecchhhhhH
Confidence            23456668776654

>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=93.93  E-value=0.1  Score=31.98  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=26.1

Q ss_pred             cCCCCH-HHHHHHHHHHhCCCChHHHHHHHHHhCC
Q 040570           30 AGILNK-EKSNLLVDMSKNNVRPKDVLHVLKKRNM   63 (210)
Q Consensus        30 ~R~lt~-~~k~~i~~l~~~g~~p~~I~~~l~~~~~   63 (210)
                      .-++++ +..+.|..|.+.|++|.+|-.+|++++|
T Consensus        25 W~~~~~~eVe~~I~klakkG~tpSqIG~iLRD~~G   59 (60)
T PF08069_consen   25 WLKYSPEEVEELIVKLAKKGLTPSQIGVILRDQYG   59 (60)
T ss_dssp             T--S-HHHHHHHHHHHCCTTHCHHHHHHHHHHSCT
T ss_pred             CcCCCHHHHHHHHHHHHHcCCCHHHhhhhhhhccC
Confidence            335665 4556688999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.

>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed

Probab=90.56  E-value=1.9  Score=31.66  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=27.4

Q ss_pred             CCCCHH-HHHHHHHHHhCCCChHHHHHHHHHhCC
Q 040570           31 GILNKE-KSNLLVDMSKNNVRPKDVLHVLKKRNM   63 (210)
Q Consensus        31 R~lt~~-~k~~i~~l~~~g~~p~~I~~~l~~~~~   63 (210)
                      -+.+++ ..+.|..|.+.|++|++|--.|++++|
T Consensus        26 ~~~~~eeve~~I~~lakkG~~pSqIG~~LRD~~g   59 (151)
T PRK08561         26 VDYSPEEIEELVVELAKQGYSPSMIGIILRDQYG   59 (151)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCHHHhhhhHhhccC
Confidence            456654 455688999999999999999999995

>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A

Probab=88.37  E-value=0.35  Score=27.64  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=14.3

Q ss_pred             cCCCCHHHHHHHHHHHhCCCChHHHHHHH
Q 040570           30 AGILNKEKSNLLVDMSKNNVRPKDVLHVL   58 (210)
Q Consensus        30 ~R~lt~~~k~~i~~l~~~g~~p~~I~~~l   58 (210)
                      .++||++++..|..|.+.|.+.++|-..|
T Consensus         2 ~~~Lt~~eR~~I~~l~~~G~s~~~IA~~l   30 (44)
T PF13936_consen    2 YKHLTPEERNQIEALLEQGMSIREIAKRL   30 (44)
T ss_dssp             ----------HHHHHHCS---HHHHHHHT
T ss_pred             ccchhhhHHHHHHHHHHcCCCHHHHHHHH
Confidence            36799999999999999999999997765

>PTZ00072 40S ribosomal protein S13; Provisional

Probab=86.84  E-value=4.1  Score=29.63  Aligned_cols=32  Identities=13%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             CCCHH-HHHHHHHHHhCCCChHHHHHHHHHhCC
Q 040570           32 ILNKE-KSNLLVDMSKNNVRPKDVLHVLKKRNM   63 (210)
Q Consensus        32 ~lt~~-~k~~i~~l~~~g~~p~~I~~~l~~~~~   63 (210)
                      +.+++ ..+.|..|.+.|++|++|-..|++++|
T Consensus        24 ~~~~eeVe~~I~klaKkG~~pSqIG~iLRD~~g   56 (148)
T PTZ00072         24 KLSSSEVEDQICKLAKKGLTPSQIGVILRDSMG   56 (148)
T ss_pred             cCCHHHHHHHHHHHHHCCCCHhHhhhhhhhccC
Confidence            45554 556688999999999999999999994

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=86.81  E-value=0.17  Score=36.81  Aligned_cols=72  Identities=17%  Similarity=-0.043  Sum_probs=51.9

Q ss_pred             CcEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCCC
Q 040570          133 PRVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHP  209 (210)
Q Consensus       133 ~~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~~  209 (210)
                      ++.+.+|=||-+=+-. -.+....+|..++  ++.+-+....+...=..+|+.+++...  ..|..|+||+-.+...
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~--~~p~~ivtDk~~aY~~   72 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR--GEPRVIVTDKLPAYPA   72 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec--cccceeecccCCccch
Confidence            4678889898553322 3455788888888  667777777777777777777666653  6899999999887644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
2xzm_O	153	RPS13E; ribosome, translation; 3.93A {Tetrahymena	91.82
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	89.23
3u5c_N	151	S27A, YS15, 40S ribosomal protein S13; translation	87.7
3j20_Q	158	30S ribosomal protein S15P/S13E; archaea, archaeal	84.37
3l3u_A	163	POL polyprotein; DNA integration, AIDS, integrase,	82.68
1je8_A	82	Nitrate/nitrite response regulator protein NARL; p	81.73

>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O

Probab=91.82  E-value=0.86  Score=32.34  Aligned_cols=35  Identities=14%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             ccCCCCHH-HHHHHHHHHhCCCChHHHHHHHHHhCC
Q 040570           29 FAGILNKE-KSNLLVDMSKNNVRPKDVLHVLKKRNM   63 (210)
Q Consensus        29 ~~R~lt~~-~k~~i~~l~~~g~~p~~I~~~l~~~~~   63 (210)
                      ..-+++++ ..+.|..|.+.|++|++|--.|++++|
T Consensus        26 ~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G   61 (153)
T 2xzm_O           26 KWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHG   61 (153)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSC
T ss_pred             ccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCC
Confidence            34457765 556688999999999999999999997

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=89.23  E-value=1.7  Score=30.02  Aligned_cols=62  Identities=11%  Similarity=-0.042  Sum_probs=40.6

Q ss_pred             cEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCccc
Q 040570          134 RVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELA  206 (210)
Q Consensus       134 ~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~a  206 (210)
                      +++.+|.|+..++     +.++.+|...+-. +++.+ .+++.+...-++..+...+  |  |++|.||+...
T Consensus         3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~--g--p~~i~sDnG~~   64 (152)
T 3kks_A            3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRY--T--VLHLHSDNGPC   64 (152)
T ss_dssp             CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHS--C--CSEEEECSCHH
T ss_pred             cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHh--C--CcEEecCCchH
Confidence            5888999987433     4566677776655 45544 5677666665555443332  3  99999998654

>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O

Probab=87.70  E-value=1.7  Score=30.74  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=28.7

Q ss_pred             ccCCCCHH-HHHHHHHHHhCCCChHHHHHHHHHhCC
Q 040570           29 FAGILNKE-KSNLLVDMSKNNVRPKDVLHVLKKRNM   63 (210)
Q Consensus        29 ~~R~lt~~-~k~~i~~l~~~g~~p~~I~~~l~~~~~   63 (210)
                      ..-+++++ ..+.|..|.+.|++|++|--.|++++|
T Consensus        24 ~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~G   59 (151)
T 3u5c_N           24 AWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHG   59 (151)
T ss_dssp             SSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCC
Confidence            34457765 555688999999999999999999997

>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=84.37  E-value=2.4  Score=30.29  Aligned_cols=35  Identities=17%  Similarity=0.128  Sum_probs=28.7

Q ss_pred             ccCCCCHH-HHHHHHHHHhCCCChHHHHHHHHHhCC
Q 040570           29 FAGILNKE-KSNLLVDMSKNNVRPKDVLHVLKKRNM   63 (210)
Q Consensus        29 ~~R~lt~~-~k~~i~~l~~~g~~p~~I~~~l~~~~~   63 (210)
                      ..-+++++ ..+.|..|.+.|++|++|-..|++++|
T Consensus        24 ~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~g   59 (158)
T 3j20_Q           24 IWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYG   59 (158)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred             CCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCC
Confidence            34457765 555688999999999999999999997

>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...

Probab=82.68  E-value=4.9  Score=28.08  Aligned_cols=63  Identities=14%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             cEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccC
Q 040570          134 RVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAW  207 (210)
Q Consensus       134 ~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al  207 (210)
                      +++.+|.||..++     +.++.+|...+-. +++.+ .+++.+...-++..+...++    +++|.||+....
T Consensus        10 ~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~----~~~i~sD~G~~f   72 (163)
T 3l3u_A           10 GIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP----VKTVHTDNGSNF   72 (163)
T ss_dssp             TEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC----CCEEEECCCGGG
T ss_pred             CEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC----CcEEeecChHhh
Confidence            5899999997653     4566777777654 45544 56677776666665444432    489999997654

>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A

Probab=81.73  E-value=7.3  Score=24.21  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCccccccCCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHHHHHHhh
Q 040570           14 GFHNHLATQYLEGHSFAGILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNARQKYKV   81 (210)
Q Consensus        14 ~~HNH~~~~~~~~h~~~R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~~~k~~~   81 (210)
                      +.++|++..+......-..|++.+++.+.. ...|.+.++|-+.|.       ++...|++...+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~l-~~~g~s~~eIA~~l~-------is~~tV~~~l~r~~~   62 (82)
T 1je8_A            3 GSHHHHHHGSATTERDVNQLTPRERDILKL-IAQGLPNKMIARRLD-------ITESTVKVHVKHMLK   62 (82)
T ss_dssp             --------------CCGGGSCHHHHHHHHH-HTTTCCHHHHHHHHT-------SCHHHHHHHHHHHHH
T ss_pred             CccCCCCCCchHHHHHHccCCHHHHHHHHH-HHcCCCHHHHHHHHC-------cCHHHHHHHHHHHHH
Confidence            356666655433333456799988876655 578999999987762       344556555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d1ijwc_	47	HIN recombinase (DNA-binding domain) {Synthetic}	91.85
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	91.72
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	90.47
d1c6va_	159	Retroviral integrase, catalytic domain {Simian imm	85.85

>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic

Probab=91.85  E-value=0.13  Score=27.73  Aligned_cols=38  Identities=8%  Similarity=0.202  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCcchHhHHhHH
Q 040570           31 GILNKEKSNLLVDMSKNNVRPKDVLHVLKKRNMHNATTIRAIYNA   75 (210)
Q Consensus        31 R~lt~~~k~~i~~l~~~g~~p~~I~~~l~~~~~~~~~t~~di~N~   75 (210)
                      ++||++|.+.+..|.+.|.+..+|...+    |   +....||++
T Consensus         4 ~~lt~~q~~~a~~l~~~G~s~~~iA~~~----g---VSr~TiYry   41 (47)
T d1ijwc_           4 RAINKHEQEQISRLLEKGHPRQQLAIIF----G---IGVSTLYRY   41 (47)
T ss_dssp             CSSCHHHHHHHHHHHHTTCCHHHHHHHH----T---CCHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCCHHHHHHHH----C---cCHHHHHhh
Confidence            5799999999999999999988886654    2   344456654

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=91.72  E-value=0.3  Score=33.06  Aligned_cols=63  Identities=16%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             EEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCC
Q 040570          135 VLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWH  208 (210)
Q Consensus       135 vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~  208 (210)
                      ++.+|.|+-.|+|     .++.+|...+ ++.++. +.+++.+...-++..+...    ..|+.|.||+.....
T Consensus         5 ~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~~-~~~~~~~~v~~~l~~~~~~----~~p~~I~sDnG~eF~   67 (154)
T d1exqa_           5 IWQLDCTHLEGKV-----ILVAVHVASG-YIEAEV-IPAETGQETAYFLLKLAGR----WPVKTIHTDNGSNFT   67 (154)
T ss_dssp             EEEEEEEEETTEE-----EEEEEETTTT-EEEEEE-ESSSSHHHHHHHHHHHHHH----SCCCEEECCCCGGGT
T ss_pred             ceeeEEEEECCEE-----EEEEEECcCC-cEEEEE-ecCcchHHHHhhhhhheec----cCCCEEEEcCCcccc
Confidence            7889999887764     4566788865 555555 4667777766666554332    348999999987654

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=90.47  E-value=0.44  Score=31.72  Aligned_cols=68  Identities=12%  Similarity=-0.023  Sum_probs=43.4

Q ss_pred             cEEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccC
Q 040570          134 RVLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAW  207 (210)
Q Consensus       134 ~vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al  207 (210)
                      +++.+|-|+.....+...+ .+.+|...+ ++.++ .+.+++.+....++..+...+   ..|+.|.||.....
T Consensus         8 ~~w~~D~~~~~~~~~~~~l-~v~vD~~Sr-~i~~~-~~~~~t~~~~~~~l~~~~~~~---g~p~~i~sDnG~~F   75 (147)
T d1cxqa_           8 QIWQTDFTLEPRMAPRSWL-AVTVDTASS-AIVVT-QHGRVTSVAAQHHWATAIAVL---GRPKAIKTDNGSCF   75 (147)
T ss_dssp             CEEEEEEEECGGGTTSCEE-EEEEETTTC-CEEEE-EESSCCHHHHHHHHHHHHHHH---CCCSEEECCSCHHH
T ss_pred             CEEEEEEEEecCCCCeEEE-EEEEecccc-eeccc-ccCccchHHHHHHHHHHHHHh---CCCeEEEecccccc
Confidence            5889999887655555533 455666654 44444 456777666655555544444   35999999997543

>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Simian immunodeficiency virus [TaxId: 11723]

Probab=85.85  E-value=1.1  Score=30.01  Aligned_cols=64  Identities=16%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             EEEEecccccCcCCCceeeEEeeecCCceEEEEEEeecCccchhHHHHHHHHHHHHhcCCCCeEEEecCcccCCC
Q 040570          135 VLIMDCTYKTNRYDMPLLEIAGVTSIDLTFSVCCVYLKLKWENNYIWALERLKSIMEENMLASVIVTDRELAWHP  209 (210)
Q Consensus       135 vl~~D~Ty~tn~~~~pl~~~~g~~~~~~~~~~~~~~~~~E~~e~~~w~l~~~~~~~~~~~~p~~iitD~d~al~~  209 (210)
                      +..+|.||..++|     .++.+|... -++.++ .+.+++.+...-++.   +.... ..|+.|.||+.....+
T Consensus         6 ~W~~D~t~~~~k~-----il~~vD~~S-r~~~~~-~~~~~~a~~v~~~l~---~~~~~-~~~~~I~sDnG~~F~~   69 (159)
T d1c6va_           6 TWQMDCTHLEGKI-----VIVAVHVAS-GFIEAE-VIPQETGRQTALFLL---KLAGR-WPITHLHTDNGANFAS   69 (159)
T ss_dssp             EEEEEEEEETTEE-----EEEEECTTS-CCEEEE-ECSSCSHHHHHHHHH---HHHTT-SCCCEEECCCCSSTTS
T ss_pred             ceeeEEEEECCEE-----EEEEEECCC-CeEEEE-EeeccCHHHHHHHHH---HHhhc-cCCceeEecCCCcccc
Confidence            6789999887664     344456554 445555 556777776655544   33332 2356799999876543