Citrus Sinensis ID: 040588

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MGKGGGCFPSKKKFAIDMPEQDPSNPDGVSSNLDQNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPNDSRN
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHccccccccccccccHHHHHHccEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccccccccccccccccccccccccccccccccccccccccccHcEEEEEEEccHHHHHHHHHHHHHcccccccEEEEEEEccccccHHHHHHccccccccccccccHHHHHHccEEEEccccccccHHHHHHHHHHHHccHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccHHccc
mgkgggcfpskkkfaidmpeqdpsnpdgvssnldqnqltttsttgQLKIFIIFYSMYGHVEILARRMKKgvdsidgvegvlyrvpetlpaEVLEqmkvpqkgievpviAVDDlvhadgllfgfptrfgsmASQMKAFFDSTFHLWEQQRlagvpagffvstgtqgggqetTAWTAITQLAHHgmvyvpigytfgtemfgmdslrggspygagvfsgdgtrkptETELALAEHQGKYMAAIVKKfshpndsrn
mgkgggcfpsKKKFAIDMPEQDPSNPDGVSSNLDQNqltttsttgqLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKfshpndsrn
MGKGGGCFPSKKKFAIDMPEQDPSNPDGVSSNLDQNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVStgtqgggqettAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPNDSRN
**********************************************LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVF*********************YMAAIV***********
*****GC****************************************KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSG****KPTETELALAEHQGKYMAAIVKK**HP*****
MGKGGGCFPSKKKFAIDMPE***********NLDQNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKF********
******************************************TTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHP*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKGGGCFPSKKKFAIDMPEQDPSNPDGVSSNLDQNQLTTTSTTGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHPNDSRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q39XL1203 Flavoprotein WrbA OS=Geob yes no 0.781 0.970 0.485 1e-44
P0A8G8198 Flavoprotein WrbA OS=Shig yes no 0.769 0.979 0.462 2e-44
Q0T630198 Flavoprotein WrbA OS=Shig yes no 0.769 0.979 0.462 2e-44
Q1RDL3198 Flavoprotein WrbA OS=Esch yes no 0.769 0.979 0.462 2e-44
B1LJ00198 Flavoprotein WrbA OS=Esch yes no 0.769 0.979 0.462 2e-44
B6I980198 Flavoprotein WrbA OS=Esch yes no 0.769 0.979 0.462 2e-44
B7N3F9198 Flavoprotein WrbA OS=Esch yes no 0.769 0.979 0.462 2e-44
P0A8G6198 Flavoprotein WrbA OS=Esch N/A no 0.769 0.979 0.462 2e-44
B1IV93198 Flavoprotein WrbA OS=Esch yes no 0.769 0.979 0.462 2e-44
P0A8G7198 Flavoprotein WrbA OS=Esch yes no 0.769 0.979 0.462 2e-44
>sp|Q39XL1|WRBA_GEOMG Flavoprotein WrbA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=wrbA PE=3 SV=1 Back     alignment and function desciption
 Score =  179 bits (454), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 126/202 (62%), Gaps = 5/202 (2%)

Query: 47  LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKV--PQKGI- 103
           +K+ I FYSMYGH+  +A  + +GV  + G E VL RVPETLP +VL++M    PQK   
Sbjct: 1   MKVLIPFYSMYGHIYRMAEAVAEGVREVSGAEAVLRRVPETLPTDVLQKMGAVEPQKAFA 60

Query: 104 EVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGT 163
            +PV  VD+L  AD ++FG PTRFG+M  QM+ F D+T  LW +  L G   G F S+ T
Sbjct: 61  HIPVCTVDELAAADAIIFGTPTRFGNMCGQMRQFLDATGGLWVKGGLVGKAGGVFTSSAT 120

Query: 164 QGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFS-GDGTRKP 222
           Q GGQE+T  T  T L H GMV V + Y F  +M  +D + GGSPYGA   + G G R P
Sbjct: 121 QHGGQESTILTFHTFLLHQGMVLVGLPYAFAGQMR-IDEITGGSPYGASTIAGGQGERLP 179

Query: 223 TETELALAEHQGKYMAAIVKKF 244
           +E ELA A +QGKY+A I  K 
Sbjct: 180 SENELAGARYQGKYIAEIAAKL 201

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)
>sp|P0A8G8|WRBA_SHIFL Flavoprotein WrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2 Back     alignment and function description
>sp|Q0T630|WRBA_SHIF8 Flavoprotein WrbA OS=Shigella flexneri serotype 5b (strain 8401) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|Q1RDL3|WRBA_ECOUT Flavoprotein WrbA OS=Escherichia coli (strain UTI89 / UPEC) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|B1LJ00|WRBA_ECOSM Flavoprotein WrbA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|B6I980|WRBA_ECOSE Flavoprotein WrbA OS=Escherichia coli (strain SE11) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|B7N3F9|WRBA_ECOLU Flavoprotein WrbA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|P0A8G6|WRBA_ECOLI Flavoprotein WrbA OS=Escherichia coli (strain K12) GN=wrbA PE=1 SV=2 Back     alignment and function description
>sp|B1IV93|WRBA_ECOLC Flavoprotein WrbA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=wrbA PE=3 SV=1 Back     alignment and function description
>sp|P0A8G7|WRBA_ECOL6 Flavoprotein WrbA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=wrbA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
255556109266 Minor allergen Alt a, putative [Ricinus 0.972 0.921 0.744 1e-106
224080291268 predicted protein [Populus trichocarpa] 0.980 0.921 0.720 1e-104
225428553256 PREDICTED: minor allergen Alt a 7 [Vitis 0.984 0.968 0.706 2e-98
356538811256 PREDICTED: minor allergen Alt a 7-like [ 0.984 0.968 0.683 6e-95
225430832256 PREDICTED: minor allergen Alt a 7-like [ 0.960 0.945 0.671 3e-94
356545287254 PREDICTED: flavoprotein-like protein YCP 0.964 0.956 0.682 4e-94
255646725256 unknown [Glycine max] 0.984 0.968 0.679 7e-94
255568257257 Minor allergen Alt a, putative [Ricinus 0.968 0.949 0.647 2e-92
449451499270 PREDICTED: flavoprotein-like protein YCP 0.968 0.903 0.625 1e-90
357483313252 Flavoprotein wrbA [Medicago truncatula] 0.972 0.972 0.668 1e-90
>gi|255556109|ref|XP_002519089.1| Minor allergen Alt a, putative [Ricinus communis] gi|223541752|gb|EEF43300.1| Minor allergen Alt a, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/258 (74%), Positives = 215/258 (83%), Gaps = 13/258 (5%)

Query: 1   MGKGGGCFPSKKKFAIDMPEQDPSNPDGVSSNLDQNQL-----------TTTSTTGQLKI 49
           MGKGGGC PSKKKF +   +QDP  P+     L QNQ            +T+ T  +LKI
Sbjct: 1   MGKGGGCVPSKKKFPVS--DQDPPLPERSPPILAQNQTQITNTAIPSQNSTSQTLSKLKI 58

Query: 50  FIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIA 109
           FIIFYSMYGHVE+LARRMKKGVDSIDGVEGVLYRVPETLP E+LEQMKVP KG EVP I+
Sbjct: 59  FIIFYSMYGHVELLARRMKKGVDSIDGVEGVLYRVPETLPWEILEQMKVPPKGSEVPFIS 118

Query: 110 VDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQE 169
           V++LV+ADG LFGFPTRFGSMA+QMKAFFDST  LW +Q+LAGVPAGFFVSTGTQGGGQE
Sbjct: 119 VNELVNADGFLFGFPTRFGSMAAQMKAFFDSTAELWLEQKLAGVPAGFFVSTGTQGGGQE 178

Query: 170 TTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKPTETELAL 229
           TT WTAITQLAHHGM+YVP+GYTFG  MF MDS+RGGSPYGAGVF GDG+R+PTETELAL
Sbjct: 179 TTVWTAITQLAHHGMLYVPVGYTFGAGMFRMDSIRGGSPYGAGVFCGDGSRQPTETELAL 238

Query: 230 AEHQGKYMAAIVKKFSHP 247
           AEHQGKYMA +VK+F+ P
Sbjct: 239 AEHQGKYMATVVKRFAKP 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224080291|ref|XP_002306085.1| predicted protein [Populus trichocarpa] gi|222849049|gb|EEE86596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428553|ref|XP_002280986.1| PREDICTED: minor allergen Alt a 7 [Vitis vinifera] gi|297741422|emb|CBI32553.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538811|ref|XP_003537894.1| PREDICTED: minor allergen Alt a 7-like [Glycine max] Back     alignment and taxonomy information
>gi|225430832|ref|XP_002273030.1| PREDICTED: minor allergen Alt a 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356545287|ref|XP_003541075.1| PREDICTED: flavoprotein-like protein YCP4-like [Glycine max] Back     alignment and taxonomy information
>gi|255646725|gb|ACU23836.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255568257|ref|XP_002525103.1| Minor allergen Alt a, putative [Ricinus communis] gi|223535562|gb|EEF37230.1| Minor allergen Alt a, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451499|ref|XP_004143499.1| PREDICTED: flavoprotein-like protein YCP4-like [Cucumis sativus] gi|449517812|ref|XP_004165938.1| PREDICTED: flavoprotein-like protein YCP4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357483313|ref|XP_003611943.1| Flavoprotein wrbA [Medicago truncatula] gi|355513278|gb|AES94901.1| Flavoprotein wrbA [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2115405273 AT4G36750 [Arabidopsis thalian 0.833 0.769 0.679 2.5e-81
TAIR|locus:2131749205 AT4G27270 [Arabidopsis thalian 0.789 0.970 0.575 1.2e-60
TAIR|locus:2178868207 AT5G58800 [Arabidopsis thalian 0.777 0.946 0.510 3e-53
UNIPROTKB|P0A8G6198 wrbA [Escherichia coli K-12 (t 0.769 0.979 0.422 9.9e-39
SGD|S000000597247 YCP4 "Protein of unknown funct 0.777 0.793 0.427 1.6e-38
TIGR_CMR|GSU_0804203 GSU_0804 "trp repressor bindin 0.785 0.975 0.428 5.5e-38
CGD|CAL0003649199 PST3 [Candida albicans (taxid: 0.769 0.974 0.429 6.3e-37
CGD|CAL0003651288 YCP4 [Candida albicans (taxid: 0.742 0.649 0.432 6.3e-37
ASPGD|ASPL0000059021204 AN0297 [Emericella nidulans (t 0.738 0.911 0.439 2.7e-36
UNIPROTKB|G4MTI8204 MGG_01569 "Minor allergen Alt 0.738 0.911 0.432 2.7e-36
TAIR|locus:2115405 AT4G36750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 761 (272.9 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
 Identities = 144/212 (67%), Positives = 168/212 (79%)

Query:    38 LTTTST--TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQ 95
             +TTT+   +  LKIF++FYSMYGHVE LA+RMKKGVDS++GVE  LYRVPETL  EV+EQ
Sbjct:    62 ITTTAAKISSPLKIFVVFYSMYGHVESLAKRMKKGVDSVEGVEATLYRVPETLSQEVVEQ 121

Query:    96 MKVPQKGIEVPVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPA 155
             MK P K +E+P I   +L  ADG LFGFPTR+G MA+QMKAFFDST  LW++Q LAG PA
Sbjct:   122 MKAPVKDLEIPEITAAELTAADGFLFGFPTRYGCMAAQMKAFFDSTGSLWKEQSLAGKPA 181

Query:   156 GFFVSXXXXXXXXXXXAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFS 215
             GFFVS           AWTAITQL HHGM++VPIGYTFG  MF MDS+RGGSPYGAGVF+
Sbjct:   182 GFFVSTGTQGGGQETTAWTAITQLVHHGMLFVPIGYTFGAGMFKMDSIRGGSPYGAGVFA 241

Query:   216 GDGTRKPTETELALAEHQGKYMAAIVKKFSHP 247
             GDG+R+ TETELALAEHQG YMAAIVK+ + P
Sbjct:   242 GDGSREATETELALAEHQGNYMAAIVKRLAQP 273
GO:0005737 "cytoplasm" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2131749 AT4G27270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178868 AT5G58800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0A8G6 wrbA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
SGD|S000000597 YCP4 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0804 GSU_0804 "trp repressor binding protein WrbA" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
CGD|CAL0003649 PST3 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
CGD|CAL0003651 YCP4 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000059021 AN0297 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MTI8 MGG_01569 "Minor allergen Alt a 7" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
PRK03767200 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase 3e-76
TIGR01755197 TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreducta 1e-64
COG0655207 COG0655, WrbA, Multimeric flavodoxin WrbA [General 1e-39
pfam03358151 pfam03358, FMN_red, NADPH-dependent FMN reductase 8e-13
pfam00258142 pfam00258, Flavodoxin_1, Flavodoxin 3e-11
pfam02525192 pfam02525, Flavodoxin_2, Flavodoxin-like fold 0.001
COG0426388 COG0426, FpaA, Uncharacterized flavoproteins [Ener 0.002
>gnl|CDD|179647 PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional Back     alignment and domain information 
 Score =  229 bits (586), Expect = 3e-76
 Identities = 90/199 (45%), Positives = 121/199 (60%), Gaps = 7/199 (3%)

Query: 48  KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQM--KVPQKGIEV 105
           K+ +++YSMYGH+E +A  + +G   + G E  + RVPET+P EV ++   K  Q     
Sbjct: 3   KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAA--- 59

Query: 106 PVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQG 165
           PV   D+L   D ++FG PTRFG+MA QM+ F D T  LW +  L G     F STGTQ 
Sbjct: 60  PVATPDELADYDAIIFGTPTRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQH 119

Query: 166 GGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFS-GDGTRKPTE 224
           GGQETT  +  T L HHGMV V + Y F      +D + GGSPYGA   + GDG+R+P+E
Sbjct: 120 GGQETTITSTHTTLLHHGMVIVGLPYAF-QGQMDVDEVTGGSPYGATTIAGGDGSRQPSE 178

Query: 225 TELALAEHQGKYMAAIVKK 243
            ELA A +QG+++A I  K
Sbjct: 179 NELAGARYQGRHVAEIAAK 197

Length = 200
>gnl|CDD|130816 TIGR01755, flav_wrbA, NAD(P)H:quinone oxidoreductase, type IV Back     alignment and domain information
>gnl|CDD|223728 COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only] Back     alignment and domain information
>gnl|CDD|217511 pfam03358, FMN_red, NADPH-dependent FMN reductase Back     alignment and domain information
>gnl|CDD|215823 pfam00258, Flavodoxin_1, Flavodoxin Back     alignment and domain information
>gnl|CDD|217085 pfam02525, Flavodoxin_2, Flavodoxin-like fold Back     alignment and domain information
>gnl|CDD|223503 COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
PRK03767200 NAD(P)H:quinone oxidoreductase; Provisional 100.0
TIGR01755197 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. 100.0
KOG3135203 consensus 1,4-benzoquinone reductase-like; Trp rep 100.0
COG0655207 WrbA Multimeric flavodoxin WrbA [General function 99.95
PRK05569141 flavodoxin; Provisional 99.94
PRK06756148 flavodoxin; Provisional 99.94
PRK05568142 flavodoxin; Provisional 99.93
PRK06703151 flavodoxin; Provisional 99.91
PRK06242150 flavodoxin; Provisional 99.91
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.9
TIGR01753140 flav_short flavodoxin, short chain. Flavodoxins ar 99.9
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 99.89
PRK07308146 flavodoxin; Validated 99.89
PF03358152 FMN_red: NADPH-dependent FMN reductase; InterPro: 99.89
PRK10569191 NAD(P)H-dependent FMN reductase; Provisional 99.85
PRK09267169 flavodoxin FldA; Validated 99.84
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 99.83
PRK00170201 azoreductase; Reviewed 99.79
TIGR03566174 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Memb 99.79
TIGR03567171 FMN_reduc_SsuE FMN reductase, SsuE family. Members 99.79
PRK09271160 flavodoxin; Provisional 99.78
PRK01355199 azoreductase; Reviewed 99.77
PRK12359172 flavodoxin FldB; Provisional 99.76
TIGR01752167 flav_long flavodoxin, long chain. Flavodoxins are 99.76
PRK09739199 hypothetical protein; Provisional 99.75
TIGR01754140 flav_RNR ribonucleotide reductase-associated flavo 99.73
PF12682156 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A. 99.72
PRK07116160 flavodoxin; Provisional 99.69
TIGR02690219 resist_ArsH arsenical resistance protein ArsH. Mem 99.69
PRK06934221 flavodoxin; Provisional 99.69
PRK11104177 hemG protoporphyrinogen oxidase; Provisional 99.69
PRK13556208 azoreductase; Provisional 99.67
PRK09004146 FMN-binding protein MioC; Provisional 99.63
COG0716151 FldA Flavodoxins [Energy production and conversion 99.62
PF12724143 Flavodoxin_5: Flavodoxin domain 99.61
PF12641160 Flavodoxin_3: Flavodoxin domain 99.59
PF02525199 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR0 99.58
PF00258143 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This 99.57
PRK08105149 flavodoxin; Provisional 99.55
PRK13555208 azoreductase; Provisional 99.54
COG4635175 HemG Flavodoxin [Energy production and conversion 99.51
PRK04930184 glutathione-regulated potassium-efflux system anci 99.49
COG0431184 Predicted flavoprotein [General function predictio 99.49
PRK05723151 flavodoxin; Provisional 99.34
PRK00871176 glutathione-regulated potassium-efflux system anci 99.31
COG2249189 MdaB Putative NADPH-quinone reductase (modulator o 99.29
COG1182202 AcpD Acyl carrier protein phosphodiesterase [Lipid 99.22
PRK10953 600 cysJ sulfite reductase subunit alpha; Provisional 99.22
TIGR01931 597 cysJ sulfite reductase [NADPH] flavoprotein, alpha 99.13
KOG4530199 consensus Predicted flavoprotein [General function 99.1
PRK03600134 nrdI ribonucleotide reductase stimulatory protein; 98.87
TIGR00333125 nrdI ribonucleoside-diphosphate reductase 2, opero 98.58
PRK02551154 flavoprotein NrdI; Provisional 98.21
KOG1159 574 consensus NADP-dependent flavoprotein reductase [E 98.17
PF07972122 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: 97.25
COG1780141 NrdI Protein involved in ribonucleotide reduction 96.99
COG0369 587 CysJ Sulfite reductase, alpha subunit (flavoprotei 96.14
PRK1031094 PTS system galactitol-specific transporter subunit 95.95
COG1440102 CelA Phosphotransferase system cellobiose-specific 95.15
PRK10499106 PTS system N,N'-diacetylchitobiose-specific transp 94.8
PRK10427114 putative PTS system fructose-like transporter subu 94.64
TIGR0085395 pts-lac PTS system, lactose/cellobiose family IIB 94.5
PF0230290 PTS_IIB: PTS system, Lactose/Cellobiose specific I 94.2
PRK09590104 celB cellobiose phosphotransferase system IIB comp 93.91
COG1445122 FrwB Phosphotransferase system fructose-specific c 93.69
KOG1160 601 consensus Fe-S oxidoreductase [Energy production a 93.43
cd0556599 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en 92.65
COG341493 SgaB Phosphotransferase system, galactitol-specifi 92.04
PRK13143200 hisH imidazole glycerol phosphate synthase subunit 91.46
cd0556689 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB 90.84
cd0556496 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic 89.97
PRK09548602 PTS system ascorbate-specific transporter subunits 89.48
PF06283217 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. 88.65
PRK06490239 glutamine amidotransferase; Provisional 88.28
cd0556787 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of 88.14
PRK10712 563 PTS system fructose-specific transporter subunits 87.83
PRK11404 482 putative PTS system transporter subunits IIBC; Pro 87.27
PRK07053234 glutamine amidotransferase; Provisional 86.98
cd0013384 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is 86.63
PRK08250235 glutamine amidotransferase; Provisional 86.2
PRK13146209 hisH imidazole glycerol phosphate synthase subunit 84.84
cd0556386 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB o 82.7
PRK01175261 phosphoribosylformylglycinamidine synthase I; Prov 81.75
TIGR0082985 FRU PTS system, fructose-specific, IIB component. 80.34
cd0556885 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosph 80.23
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.6e-36  Score=254.05  Aligned_cols=198  Identities=44%  Similarity=0.741  Sum_probs=167.0

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCC-CCCCcccchhhhhccCeEEEecc
Q 040588           46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQK-GIEVPVIAVDDLVHADGLLFGFP  124 (252)
Q Consensus        46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~-~d~~~~~~~~~l~~aD~II~gsP  124 (252)
                      ||||+|||+|++|||++||++|++++++..|++++++++.+..|..+.....|... .+++.  ..+++.+||+||||||
T Consensus         1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~aD~ii~gsP   78 (200)
T PRK03767          1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVA--TPDELADYDAIIFGTP   78 (200)
T ss_pred             CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCcc--CHHHHHhCCEEEEEec
Confidence            57999999999999999999999999753589999999987666555543333321 12222  2688999999999999


Q ss_pred             ccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCCC
Q 040588          125 TRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLR  204 (252)
Q Consensus       125 ~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~~  204 (252)
                      +|+|+++++||.|+|++..+|....+.+|++++|+++||.+|+.+.++.++...+.++||.+++.++.+ ...+..+.++
T Consensus        79 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~~-~~~~~~~~~~  157 (200)
T PRK03767         79 TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYAF-QGQMDVDEVT  157 (200)
T ss_pred             ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCcc-cccccccccc
Confidence            999999999999999998888766799999999999999888888899999999999999999987753 3333445677


Q ss_pred             CCCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588          205 GGSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKFSH  246 (252)
Q Consensus       205 ~~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l~~  246 (252)
                      +|++||+.++.+ +++.+|+++|++.|+.+|+|+|+++++|++
T Consensus       158 ~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~  200 (200)
T PRK03767        158 GGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG  200 (200)
T ss_pred             CCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            899999998876 677899999999999999999999999874

>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV Back     alignment and domain information
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only] Back     alignment and domain information
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only] Back     alignment and domain information
>PRK05569 flavodoxin; Provisional Back     alignment and domain information
>PRK06756 flavodoxin; Provisional Back     alignment and domain information
>PRK05568 flavodoxin; Provisional Back     alignment and domain information
>PRK06703 flavodoxin; Provisional Back     alignment and domain information
>PRK06242 flavodoxin; Provisional Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>TIGR01753 flav_short flavodoxin, short chain Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PRK07308 flavodoxin; Validated Back     alignment and domain information
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1 Back     alignment and domain information
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional Back     alignment and domain information
>PRK09267 flavodoxin FldA; Validated Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK00170 azoreductase; Reviewed Back     alignment and domain information
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily Back     alignment and domain information
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family Back     alignment and domain information
>PRK09271 flavodoxin; Provisional Back     alignment and domain information
>PRK01355 azoreductase; Reviewed Back     alignment and domain information
>PRK12359 flavodoxin FldB; Provisional Back     alignment and domain information
>TIGR01752 flav_long flavodoxin, long chain Back     alignment and domain information
>PRK09739 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative Back     alignment and domain information
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A Back     alignment and domain information
>PRK07116 flavodoxin; Provisional Back     alignment and domain information
>TIGR02690 resist_ArsH arsenical resistance protein ArsH Back     alignment and domain information
>PRK06934 flavodoxin; Provisional Back     alignment and domain information
>PRK11104 hemG protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PRK13556 azoreductase; Provisional Back     alignment and domain information
>PRK09004 FMN-binding protein MioC; Provisional Back     alignment and domain information
>COG0716 FldA Flavodoxins [Energy production and conversion] Back     alignment and domain information
>PF12724 Flavodoxin_5: Flavodoxin domain Back     alignment and domain information
>PF12641 Flavodoxin_3: Flavodoxin domain Back     alignment and domain information
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold Back     alignment and domain information
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase Back     alignment and domain information
>PRK08105 flavodoxin; Provisional Back     alignment and domain information
>PRK13555 azoreductase; Provisional Back     alignment and domain information
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism] Back     alignment and domain information
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional Back     alignment and domain information
>COG0431 Predicted flavoprotein [General function prediction only] Back     alignment and domain information
>PRK05723 flavodoxin; Provisional Back     alignment and domain information
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional Back     alignment and domain information
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only] Back     alignment and domain information
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism] Back     alignment and domain information
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional Back     alignment and domain information
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component Back     alignment and domain information
>KOG4530 consensus Predicted flavoprotein [General function prediction only] Back     alignment and domain information
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed Back     alignment and domain information
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI Back     alignment and domain information
>PRK02551 flavoprotein NrdI; Provisional Back     alignment and domain information
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion] Back     alignment and domain information
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis Back     alignment and domain information
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional Back     alignment and domain information
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional Back     alignment and domain information
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional Back     alignment and domain information
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component Back     alignment and domain information
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes Back     alignment and domain information
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed Back     alignment and domain information
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria Back     alignment and domain information
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) Back     alignment and domain information
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) Back     alignment and domain information
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional Back     alignment and domain information
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A Back     alignment and domain information
>PRK06490 glutamine amidotransferase; Provisional Back     alignment and domain information
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) Back     alignment and domain information
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional Back     alignment and domain information
>PRK11404 putative PTS system transporter subunits IIBC; Provisional Back     alignment and domain information
>PRK07053 glutamine amidotransferase; Provisional Back     alignment and domain information
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) Back     alignment and domain information
>PRK08250 glutamine amidotransferase; Provisional Back     alignment and domain information
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional Back     alignment and domain information
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) Back     alignment and domain information
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional Back     alignment and domain information
>TIGR00829 FRU PTS system, fructose-specific, IIB component Back     alignment and domain information
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3b6i_A198 Wrba From Escherichia Coli, Native Structure Length 7e-40
2zki_A199 Crystal Structure Of Hypothetical Trp Repressor Bin 2e-22
1zwk_A207 Structure Of Wrba From Pseudomonas Aeruginosa Lengt 4e-21
2a5l_A200 The Crystal Structure Of The Trp Repressor Binding 2e-15
1ydg_A211 Crystal Structure Of Trp Repressor Binding Protein 7e-11
1yrh_A211 Crystal Structure Of Trp Repressor Binding Protein 2e-10
>pdb|3B6I|A Chain A, Wrba From Escherichia Coli, Native Structure Length = 198 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (405), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 5/199 (2%)
Query: 48  KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPV 107
           K+ +++YSMYGH+E +AR + +G   +DG E V+ RVPET+P ++ E  K   K    PV
Sbjct: 3   KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFE--KAGGKTQTAPV 60
Query: 108 IAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSXXXXXXX 167
               +L   D ++FG PTRFG+M+ QM+ F D T  LW    L G  A  F S       
Sbjct: 61  ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQ 120
Query: 168 XXXXAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFS-GDGTRKPTETE 226
                 T  T LAHHGMV VPIGY    E+F +  +RGG+PYGA   + GDG+R+P++ E
Sbjct: 121 EQTITST-WTTLAHHGMVIVPIGYA-AQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEE 178
Query: 227 LALAEHQGKYMAAIVKKFS 245
           L++A +QG+Y+A +  K +
Sbjct: 179 LSIARYQGEYVAGLAVKLN 197
>pdb|2ZKI|A Chain A, Crystal Structure Of Hypothetical Trp Repressor Binding Protein From Sul Folobus Tokodaii (St0872) Length = 199 Back     alignment and structure
>pdb|1ZWK|A Chain A, Structure Of Wrba From Pseudomonas Aeruginosa Length = 207 Back     alignment and structure
>pdb|2A5L|A Chain A, The Crystal Structure Of The Trp Repressor Binding Protein Wrba From Pseudomonas Aeruginosa Length = 200 Back     alignment and structure
>pdb|1YDG|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba Length = 211 Back     alignment and structure
>pdb|1YRH|A Chain A, Crystal Structure Of Trp Repressor Binding Protein Wrba In Complex With Fmn Length = 211 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3b6i_A198 Flavoprotein WRBA; flavoproteins, NADH:quinone oxi 2e-85
2a5l_A200 Trp repressor binding protein WRBA; APC5760, PA094 3e-85
1ydg_A211 Trp repressor binding protein WRBA; tetramer, stru 5e-83
2zki_A199 199AA long hypothetical Trp repressor binding prot 5e-80
3d7n_A193 Flavodoxin, WRBA-like protein; structural genomics 5e-69
2ark_A188 Flavodoxin; FMN, structural genomics, PSI, structu 1e-66
3edo_A151 Flavoprotein, putative Trp repressor binding prote 2e-23
1sqs_A242 Conserved hypothetical protein; structural genomic 1e-12
3hly_A161 Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein 3e-11
3fni_A159 Putative diflavin flavoprotein A 3; alpha-beta pro 5e-11
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 6e-09
3klb_A162 Putative flavoprotein; structural genomi center fo 7e-09
5nul_A138 Flavodoxin; electron transport, flavoprotein, FMN; 4e-08
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 1e-07
2vzf_A197 NADH-dependent FMN reductase; oxidoreductase; 2.50 2e-07
1rli_A184 Trp repressor binding protein; structural genomics 3e-07
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 7e-07
1vme_A410 Flavoprotein; TM0755, structural genomics, JCSG, p 1e-06
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 7e-06
2fz5_A137 Flavodoxin; alpha/beta doubly-wound topology, non- 5e-05
3k1y_A191 Oxidoreductase; structural genomics, PSI-2, protei 7e-05
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Length = 198 Back     alignment and structure
 Score =  251 bits (644), Expect = 2e-85
 Identities = 90/199 (45%), Positives = 128/199 (64%), Gaps = 5/199 (2%)

Query: 48  KIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPV 107
           K+ +++YSMYGH+E +AR + +G   +DG E V+ RVPET+P ++ E+     +    PV
Sbjct: 3   KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTA--PV 60

Query: 108 IAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGG 167
               +L   D ++FG PTRFG+M+ QM+ F D T  LW    L G  A  F STGT GGG
Sbjct: 61  ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGT-GGG 119

Query: 168 QETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSG-DGTRKPTETE 226
           QE T  +  T LAHHGMV VPIGY    E+F +  +RGG+PYGA   +G DG+R+P++ E
Sbjct: 120 QEQTITSTWTTLAHHGMVIVPIGYAAQ-ELFDVSQVRGGTPYGATTIAGGDGSRQPSQEE 178

Query: 227 LALAEHQGKYMAAIVKKFS 245
           L++A +QG+Y+A +  K +
Sbjct: 179 LSIARYQGEYVAGLAVKLN 197
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Length = 200 Back     alignment and structure
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Length = 211 Back     alignment and structure
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Length = 199 Back     alignment and structure
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} Length = 193 Back     alignment and structure
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Length = 188 Back     alignment and structure
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} Length = 151 Back     alignment and structure
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* Length = 242 Back     alignment and structure
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Length = 161 Back     alignment and structure
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A Length = 159 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 Back     alignment and structure
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} Length = 162 Back     alignment and structure
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Length = 138 Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 Back     alignment and structure
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Length = 197 Back     alignment and structure
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Length = 184 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Length = 404 Back     alignment and structure
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR initiative, PSI, joint center for structural genomics, ELEC transport; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 Back     alignment and structure
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Length = 137 Back     alignment and structure
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A Length = 191 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
2a5l_A200 Trp repressor binding protein WRBA; APC5760, PA094 100.0
3b6i_A198 Flavoprotein WRBA; flavoproteins, NADH:quinone oxi 99.98
2zki_A199 199AA long hypothetical Trp repressor binding prot 99.97
1ydg_A211 Trp repressor binding protein WRBA; tetramer, stru 99.97
3d7n_A193 Flavodoxin, WRBA-like protein; structural genomics 99.97
2ark_A188 Flavodoxin; FMN, structural genomics, PSI, structu 99.95
3hly_A161 Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein 99.94
3fni_A159 Putative diflavin flavoprotein A 3; alpha-beta pro 99.94
5nul_A138 Flavodoxin; electron transport, flavoprotein, FMN; 99.92
1sqs_A242 Conserved hypothetical protein; structural genomic 99.92
3f6r_A148 Flavodoxin; FMN binding, oxidized, electron transp 99.91
2vzf_A197 NADH-dependent FMN reductase; oxidoreductase; 2.50 99.91
2q62_A247 ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobi 99.9
2fzv_A279 Putative arsenical resistance protein; flavin bind 99.9
2fz5_A137 Flavodoxin; alpha/beta doubly-wound topology, non- 99.89
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 99.89
1f4p_A147 Flavodoxin; electron transport, flavoprotein, FMN, 99.89
1rtt_A193 Conserved hypothetical protein; protein structure 99.89
1rli_A184 Trp repressor binding protein; structural genomics 99.89
3gfs_A174 FMN-dependent NADPH-azoreductase; flavoproteins, q 99.88
3fvw_A192 Putative NAD(P)H-dependent FMN reductase; Q8DWD8_s 99.88
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 99.86
4hs4_A199 Chromate reductase; triple-layered, A/B/A structur 99.86
3k1y_A191 Oxidoreductase; structural genomics, PSI-2, protei 99.86
1t0i_A191 YLR011WP; FMN binding protein, flavodoxin, azoredu 99.86
1czn_A169 Flavodoxin; FMN binding, redox potential, electron 99.85
1obo_A169 Flavodoxin; electron transfer, flavoprotein, elect 99.85
2hpv_A208 FMN-dependent NADH-azoreductase; structural genomi 99.85
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 99.85
3svl_A193 Protein YIEF; E. coli CHRR enzyme, chromate biorem 99.85
1ykg_A167 SIR-FP, sulfite reductase [NADPH] flavoprotein alp 99.84
1t5b_A201 Acyl carrier protein phosphodiesterase; structural 99.84
3s2y_A199 Chromate reductase; uranium reductase, oxidoreduct 99.74
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.83
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.83
3u7r_A190 NADPH-dependent FMN reductase; alpha/beta twisted 99.82
1ag9_A175 Flavodoxin; electron transport, reductive activati 99.82
2wc1_A182 Flavodoxin; electron transport, flavoprotein; HET: 99.82
3klb_A162 Putative flavoprotein; structural genomi center fo 99.82
1yob_A179 Flavodoxin 2, flavodoxin II; alpha-beta fold, non- 99.81
2hna_A147 Protein MIOC, flavodoxin; alpha-beta sandwich, fla 99.8
3lcm_A196 SMU.1420, putative oxidoreductase; NADPH:quinone o 99.79
4ici_A171 Putative flavoprotein; PF12682 family protein, fla 99.79
1d4a_A273 DT-diaphorase, quinone reductase; flavoprotein, ro 99.79
3r6w_A212 FMN-dependent NADH-azoreductase 1; nitrofurazone, 99.79
3f2v_A192 General stress protein 14; alpha-beta protein., st 99.79
3edo_A151 Flavoprotein, putative Trp repressor binding prote 99.78
2fcr_A173 Flavodoxin; electron transport; HET: FMN; 1.80A {C 99.78
3p0r_A211 Azoreductase; structural genomics, center for stru 99.77
1bvy_F191 Protein (cytochrome P450 BM-3); fatty acid monooxy 99.76
2amj_A204 Modulator of drug activity B; oxidoreductase, mena 99.76
2bmv_A164 Flavodoxin; electron transport, flavoprotein, FMN, 99.76
3u7i_A223 FMN-dependent NADH-azoreductase 1; structural geno 99.73
3rpe_A218 MDAB, modulator of drug activity B; structural gen 99.73
3tem_A228 Ribosyldihydronicotinamide dehydrogenase [quinone; 99.73
4gi5_A280 Quinone reductase; protein structure initiative, F 99.7
3ha2_A177 NADPH-quinone reductase; structural genomics, PSI- 99.63
3l9w_A413 Glutathione-regulated potassium-efflux system Pro 99.6
2bpo_A 682 CPR, P450R, NADPH-cytochrom P450 reductase; NADPH- 99.56
3hr4_A219 Nitric oxide synthase, inducible; inducible nitric 99.55
2xod_A119 NRDI protein, NRDI; flavoprotein, redox protein, r 99.41
3qe2_A 618 CPR, P450R, NADPH--cytochrome P450 reductase; cypo 99.33
1tll_A 688 Nitric-oxide synthase, brain; reductase module, FM 99.26
1rlj_A139 NRDI protein; flavoprotein, FMN, thioredoxin, alph 98.97
3n3a_C153 Protein NRDI; ribonucleotide reductase, four-helix 98.64
2kyr_A111 Fructose-like phosphotransferase enzyme IIB compo; 96.7
1e2b_A106 Enzyme IIB-cellobiose; phosphotransferase system, 96.3
1tvm_A113 PTS system, galactitol-specific IIB component; pho 96.26
2m1z_A106 LMO0427 protein; homolog PTS system IIB component, 96.23
3nbm_A108 PTS system, lactose-specific IIBC components; PTS_ 95.91
2l2q_A109 PTS system, cellobiose-specific IIB component (CE; 95.21
3czc_A110 RMPB; alpha/beta sandwich, phosphotransferase syst 94.84
2r48_A106 Phosphotransferase system (PTS) mannose-specific i 94.83
2r4q_A106 Phosphotransferase system (PTS) fructose-specific 94.53
1vkr_A125 Mannitol-specific PTS system enzyme iiabc compone; 93.56
2iuf_A688 Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen 93.09
3kkl_A244 Probable chaperone protein HSP33; peptidase, heat 91.5
3rht_A259 (gatase1)-like protein; structural genomics, PSI-b 89.32
3ej6_A688 Catalase-3; heme, hydrogen iron, metal-binding, ox 89.04
3efe_A212 THIJ/PFPI family protein; structural GEN csgid, ce 88.61
4gdh_A194 DJ-1, uncharacterized protein C22E12.03C; unknown 88.37
4e5v_A281 Putative THUA-like protein; THUA-like proteins, tr 88.09
3ttv_A753 Catalase HPII; heme orientation, oxidoreductase; H 84.56
4gud_A211 Imidazole glycerol phosphate synthase subunit His; 81.38
2fgx_A107 Putative thioredoxin; NET3, NESG, GFT-glutaredoxin 81.08
3n7t_A247 Macrophage binding protein; seattle structural gen 80.18
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-32  Score=225.39  Aligned_cols=197  Identities=36%  Similarity=0.591  Sum_probs=145.9

Q ss_pred             CCCceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccCCCCCCCCcccchhhhhccCeEEEec
Q 040588           44 TGQLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEVPVIAVDDLVHADGLLFGF  123 (252)
Q Consensus        44 ~~~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~~~~~d~~~~~~~~~l~~aD~II~gs  123 (252)
                      +.||||+|||+|++|||+++|++|++++++ .|++++++++.+. +..|..+..|. +++..+....+++.+||+|||||
T Consensus         3 M~M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~aD~ii~gs   79 (200)
T 2a5l_A            3 MSSPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDI-PAEGALYATLEDLKNCAGLALGS   79 (200)
T ss_dssp             --CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC--------------CCBCCHHHHHTCSEEEEEE
T ss_pred             CCcceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhcccc-ccccCchhhHHHHHHCCEEEEEc
Confidence            457899999999999999999999999998 7999999999886 33455444454 22222222367899999999999


Q ss_pred             cccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccccCC
Q 040588          124 PTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSL  203 (252)
Q Consensus       124 P~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~~~~  203 (252)
                      |+|++++|+++|+|||++...|....++||++++|+++|+..++.+.++.++...|..+|+.+++..+.. +..  .+.+
T Consensus        80 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~--~~~~  156 (200)
T 2a5l_A           80 PTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSE-PAL--LETR  156 (200)
T ss_dssp             ECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC------------
T ss_pred             ChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCC-ccc--cccc
Confidence            9999999999999999998776656789999999999998766766788999999999999999865431 000  0112


Q ss_pred             CCCCccccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 040588          204 RGGSPYGAGVFSG-DGTRKPTETELALAEHQGKYMAAIVKKFSH  246 (252)
Q Consensus       204 ~~~~~~G~~~~~~-~~~~~pde~~l~~a~~~g~~la~~~~~l~~  246 (252)
                      ..+.+++.+.+.+ +++..|+++++++|+++|++|++.+++++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~  200 (200)
T 2a5l_A          157 GGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS  200 (200)
T ss_dssp             ---CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence            2345566655543 445689999999999999999999988763
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Back     alignment and structure
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Back     alignment and structure
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens} Back     alignment and structure
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Back     alignment and structure
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} Back     alignment and structure
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A Back     alignment and structure
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* Back     alignment and structure
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A* Back     alignment and structure
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Back     alignment and structure
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* Back     alignment and structure
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} Back     alignment and structure
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4 Back     alignment and structure
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Back     alignment and structure
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A* Back     alignment and structure
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6 Back     alignment and structure
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* Back     alignment and structure
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A* Back     alignment and structure
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A Back     alignment and structure
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4 Back     alignment and structure
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A* Back     alignment and structure
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A* Back     alignment and structure
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis} Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli} Back     alignment and structure
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2 Back     alignment and structure
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Back     alignment and structure
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans} Back     alignment and structure
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A* Back     alignment and structure
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus} Back     alignment and structure
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1 Back     alignment and structure
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Back     alignment and structure
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A* Back     alignment and structure
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii} Back     alignment and structure
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* Back     alignment and structure
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A* Back     alignment and structure
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} Back     alignment and structure
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} Back     alignment and structure
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1 Back     alignment and structure
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} Back     alignment and structure
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1 Back     alignment and structure
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A* Back     alignment and structure
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A* Back     alignment and structure
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis} Back     alignment and structure
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis} Back     alignment and structure
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ... Back     alignment and structure
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} Back     alignment and structure
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* Back     alignment and structure
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Back     alignment and structure
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens} Back     alignment and structure
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A* Back     alignment and structure
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Back     alignment and structure
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Back     alignment and structure
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7 Back     alignment and structure
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C* Back     alignment and structure
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli} Back     alignment and structure
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D Back     alignment and structure
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli} Back     alignment and structure
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e} Back     alignment and structure
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae} Back     alignment and structure
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi} Back     alignment and structure
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans} Back     alignment and structure
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2 Back     alignment and structure
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2 Back     alignment and structure
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B* Back     alignment and structure
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A* Back     alignment and structure
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Back     alignment and structure
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus} Back     alignment and structure
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa} Back     alignment and structure
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Back     alignment and structure
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Back     alignment and structure
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae} Back     alignment and structure
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ... Back     alignment and structure
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae} Back     alignment and structure
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} Back     alignment and structure
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d1ydga_201 c.23.5.8 (A:) Trp repressor binding protein WrbA { 8e-48
d2a5la1196 c.23.5.8 (A:3-198) Trp repressor binding protein W 2e-47
d2arka1184 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolic 4e-34
d1e5da1152 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreduct 7e-18
d1ycga1149 c.23.5.1 (A:251-399) Nitric oxide reductase C-term 4e-16
d1sqsa_232 c.23.5.5 (A:) Hypothetical protein SP1951 {(Strept 1e-15
d1rlia_179 c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus 1e-13
d1vmea1148 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, 3e-12
d5nula_138 c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii 2e-07
d1nni1_171 c.23.5.4 (1:) Azobenzene reductase {Bacillus subti 2e-05
d2fz5a1137 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdeni 4e-05
d1t0ia_185 c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker 0.003
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Length = 201 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  155 bits (392), Expect = 8e-48
 Identities = 64/204 (31%), Positives = 88/204 (43%), Gaps = 12/204 (5%)

Query: 47  LKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKVPQKGIEV- 105
           +K+ I+FYS  G    +A+   +   +  G E  L +V ET P +V++     +  IE  
Sbjct: 3   VKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRETAPQDVIDGQDAWKANIEAM 61

Query: 106 ---PVIAVDDLVHADGLLFGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTG 162
              P     DL  A+ ++F  PTRFG   SQM+AF D+   LW   +LA        S  
Sbjct: 62  KDVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 121

Query: 163 TQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGMDSLRGGSPYGAGVFSGDGTRKP 222
              GGQETT  T      H G V  P GYT            GG+PYGA V +    +  
Sbjct: 122 NVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFK-----SGGNPYGASVTANG--QPL 174

Query: 223 TETELALAEHQGKYMAAIVKKFSH 246
            E + A   HQ +    +  K   
Sbjct: 175 LENDRASIRHQVRRQVELTAKLLE 198
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Length = 196 Back     information, alignment and structure
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Length = 184 Back     information, alignment and structure
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 152 Back     information, alignment and structure
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 149 Back     information, alignment and structure
>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Length = 232 Back     information, alignment and structure
>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 148 Back     information, alignment and structure
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Length = 138 Back     information, alignment and structure
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} Length = 171 Back     information, alignment and structure
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Length = 137 Back     information, alignment and structure
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 185 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1ydga_201 Trp repressor binding protein WrbA {Deinococcus ra 100.0
d2a5la1196 Trp repressor binding protein WrbA {Pseudomonas ae 100.0
d2arka1184 Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} 100.0
d1ycga1149 Nitric oxide reductase C-terminal domain {Moorella 99.96
d1e5da1152 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal 99.96
d1vmea1148 ROO-like flavoprotein TM0755, C-terminal domain {T 99.89
d5nula_138 Flavodoxin {Clostridium beijerinckii [TaxId: 1520] 99.88
d2fz5a1137 Flavodoxin {Megasphaera elsdenii [TaxId: 907]} 99.88
d1rlia_179 Hypothetical protein YwqN {Bacillus subtilis [TaxI 99.87
d1nni1_171 Azobenzene reductase {Bacillus subtilis [TaxId: 14 99.87
d2fzva1233 Putative arsenical resistance protein {Shigella fl 99.87
d1sqsa_232 Hypothetical protein SP1951 {(Streptococcus pneumo 99.87
d1t0ia_185 Hypothetical protein Ylr011wp {Baker's yeast (Sacc 99.84
d1rtta_174 Hypothetical protein PA1204 {Pseudomonas aeruginos 99.82
d1f4pa_147 Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} 99.75
d1d4aa_273 NAD(P)H:quinone reductase {Human (Homo sapiens) [T 99.71
d2qwxa1230 Quinone reductase type 2 (menadione reductase) {Hu 99.71
d1oboa_169 Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 11 99.7
d1czna_169 Flavodoxin {Synechococcus elongatus PCC 7942 [TaxI 99.67
d2z98a1200 ACP phosphodiesterase AcpD {Escherichia coli [TaxI 99.67
d1yoba1179 Flavodoxin {Azotobacter vinelandii [TaxId: 354]} 99.58
d2fcra_173 Flavodoxin {Chondrus crispus [TaxId: 2769]} 99.57
d1ag9a_175 Flavodoxin {Escherichia coli [TaxId: 562]} 99.51
d1ykga1146 Sulfite reductase alpha-component CysJ N-terminal 99.48
d1fuea_163 Flavodoxin {Helicobacter pylori [TaxId: 210]} 99.48
d1ja1a2177 NADPH-cytochrome p450 reductase, N-terminal domain 99.26
d1bvyf_152 FMN-binding domain of the cytochrome P450bm-3 {Bac 99.24
d1tlla2202 Nitric oxide (NO) synthase FMN domain {Rat (Rattus 99.12
d1rlja_135 Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423] 98.51
d2a9va1196 GMP synthase subunit A, GuaAA {Archaeon Thermoplas 95.4
d2r4qa1103 Fructose-specific enzyme IIABC component FruA, mid 93.96
d2r48a1103 Mannose-specific enzyme IIBCA component ManP, N-te 93.56
d1ka9h_195 GAT subunit, HisH, (or domain) of imidazoleglycero 93.34
d1iiba_103 Enzyme IIB-cellobiose {Escherichia coli [TaxId: 56 92.85
d1k9vf_200 GAT subunit, HisH, (or domain) of imidazoleglycero 89.59
d2f1ka2165 Prephenate dehydrogenase TyrA {Synechocystis sp. p 88.77
d1iloa_77 MTH985, a thioredoxin {Archaeon Methanobacterium t 86.18
d1vhqa_217 Putative sigma cross-reacting protein 27A (SCRP-27 85.42
d1q7ra_202 Hypothetical protein YaaE {Bacillus stearothermoph 85.1
d1u9ca_221 GK2698 ortholog {Bacillus stearothermophilus [TaxI 84.05
d1vkra_97 PTS system mannitol-specific EIICBA component {Esc 83.53
d1jvna2232 GAT subunit, HisH, (or domain) of imidazoleglycero 82.96
d1g2ia_166 Intracellular protease {Archaeon Pyrococcus horiko 82.13
d2nv0a1195 Hypothetical protein YaaE {Bacillus subtilis [TaxI 80.13
d3eeqa2207 Cobalamin biosynthesis protein G, CbiG {Sulfolobus 80.12
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: WrbA-like
domain: Trp repressor binding protein WrbA
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=1.4e-36  Score=252.27  Aligned_cols=193  Identities=32%  Similarity=0.419  Sum_probs=164.3

Q ss_pred             CceEEEEEeCCchhHHHHHHHHHHhccccCCceEEEEECCCCCCHHHHhcccC-----CCCCCCCcccchhhhhccCeEE
Q 040588           46 QLKIFIIFYSMYGHVEILARRMKKGVDSIDGVEGVLYRVPETLPAEVLEQMKV-----PQKGIEVPVIAVDDLVHADGLL  120 (252)
Q Consensus        46 ~~kIlIIy~S~~GnT~~la~~i~~~l~~~~G~ev~l~~l~~~~p~~~~~~~~~-----~~~~d~~~~~~~~~l~~aD~II  120 (252)
                      .|||||||+|++|||++||++|++++++ .|+|++++++.+..+..|+.+..|     +..+|++... .++|.+||+||
T Consensus         2 ~mkilivy~S~~GnT~~la~~ia~g~~~-~G~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~i~~aD~ii   79 (201)
T d1ydga_           2 PVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEAT-PADLEWAEAIV   79 (201)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCC-HHHHHHCSEEE
T ss_pred             CcEEEEEEeCCCcHHHHHHHHHHHHHHh-cCCEEEEEEccccCccchhhhhhHhhcCCCcccCchhhh-hhhHhhCCEeE
Confidence            5899999999999999999999999999 899999999999888888775533     2334566655 89999999999


Q ss_pred             EeccccCCCchHHHHHHHHhhhhhhhhccCCCCcEEEEEeeCCCCCChHHHHHHHHHHHHHcCcEEecCCccCCCccccc
Q 040588          121 FGFPTRFGSMASQMKAFFDSTFHLWEQQRLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMVYVPIGYTFGTEMFGM  200 (252)
Q Consensus       121 ~gsP~y~g~~~~~~k~fld~l~~~~~~~~l~gK~~~if~s~G~~~g~~~~~l~~l~~~l~~~G~~vv~~~~~~~~~~~~~  200 (252)
                      ||||+||++++++||.||||+..+|....+.||++++|+++|+.+|+++.++..+...+..+||.+++.++...     .
T Consensus        80 ~gsPvy~~~~s~~~k~flDr~~~~~~~~~l~gK~~~~~~s~g~~~gg~e~~~~~~~~~~~~~g~~~v~~~~~~~-----~  154 (201)
T d1ydga_          80 FSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDE-----V  154 (201)
T ss_dssp             EEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCSH-----H
T ss_pred             EecceeeeeccchhHHHHHHhhhHHhccccCCceeeeeeccccCCCchHHHHHhHHHHHHHcCCccccccccch-----h
Confidence            99999999999999999999988887778999999999999998888888999999999999999998765421     0


Q ss_pred             cCCCCCCccccceecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 040588          201 DSLRGGSPYGAGVFSGDGTRKPTETELALAEHQGKYMAAIVKKFSHP  247 (252)
Q Consensus       201 ~~~~~~~~~G~~~~~~~~~~~pde~~l~~a~~~g~~la~~~~~l~~~  247 (252)
                      -...++.+||..++..  ...|++++++.|+++|++||+++++|+..
T Consensus       155 ~~~~gg~~~G~~~~~~--~~~~~e~~l~~ar~lGk~la~~a~kL~~g  199 (201)
T d1ydga_         155 IFKSGGNPYGASVTAN--GQPLLENDRASIRHQVRRQVELTAKLLEG  199 (201)
T ss_dssp             HHHTTCCSSSCEEECC--SSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCcccCcceecC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            0123567788877753  34689999999999999999999998754
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} Back     information, alignment and structure
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Back     information, alignment and structure
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]} Back     information, alignment and structure
>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2z98a1 c.23.5.3 (A:1-200) ACP phosphodiesterase AcpD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]} Back     information, alignment and structure
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuea_ c.23.5.1 (A:) Flavodoxin {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rlja_ c.23.5.7 (A:) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC component FruA, middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component ManP, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure