Citrus Sinensis ID: 040601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Secondary Structure (PSIPRED)
ccccccccEEEEEccccEEccccccccccccHHHHHHcccccccccEEEEccEEEEEEEcccHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHccEEEEEEEccHHEEHccccccccHHHHHHcccccccccccccEEcccccEEEEcccHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mvyrqkklHLVLDLDHTLLHAVDIDILASKDREYLMKlgssssdgdlFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Flexible Loop (DISEMBL)
MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLgssssdgdlFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Low Complexity Region (SEG)
MVYRQKKlhlvldldhtllhavdIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Disordered region (IsUnstruct)
*****KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLG*****GDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL***
Disordered Region (DISOPRED)
MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Disordered Region (DISEMBL)
MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Disordered Region (DISPRO)
MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
Q00IB6	440	RNA polymerase II C-termi	no	no	0.958	0.211	0.47	2e-14
Q8LL04	1241	RNA polymerase II C-termi	no	no	0.989	0.077	0.414	5e-12
Q8SV03	411	RNA polymerase II subunit	yes	no	0.783	0.184	0.369	2e-06
Q03254	732	RNA polymerase II subunit	yes	no	0.948	0.125	0.286	2e-06
Q9P376	723	RNA polymerase II subunit	yes	no	0.855	0.114	0.280	4e-06
Q9Y5B0	961	RNA polymerase II subunit	no	no	0.855	0.086	0.322	7e-06
Q7TSG2	960	RNA polymerase II subunit	yes	no	0.855	0.086	0.322	8e-06
Q5XIK8	465	CTD small phosphatase-lik	no	no	0.824	0.172	0.340	0.0001
Q8BG15	465	CTD small phosphatase-lik	no	no	0.824	0.172	0.340	0.0001
Q05D32	466	CTD small phosphatase-lik	no	no	0.824	0.171	0.340	0.0001

>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 7/100 (7%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYL------MKLGSSSSDGDLFKMAGELFLV 57
           RQ+KL+LVLDLDHTLL+   +  L  ++ EYL      ++ G + S G LF +     + 
Sbjct: 119 RQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLEFMQMMT 177

Query: 58  KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           KLRP++  FLKEAS+M+ +Y+ T G R+YA  MAKLLD K
Sbjct: 178 KLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPK 217

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Required for normal plant growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 2    VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDG---DLFKMAGELFLVK 58
            ++  +KL LVLD+DHTLL++   + + S+  E L K      +     LF+        K
Sbjct: 922  MFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHMGMWTK 981

Query: 59   LRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
            LRP I  FL++ASK+YE++L T G + YA  MAKLLD K
Sbjct: 982  LRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPK 1020

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 16/92 (17%)

Query: 5   QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDL-FKMAGELFLVKLRPYI 63
           Q KL LVLDLD T+LH                  G+SS +G + F +    + VKLRP +
Sbjct: 58  QMKLILVLDLDQTVLHTT---------------YGTSSLEGTVKFVIDRCRYCVKLRPNL 102

Query: 64  RKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
              L+  SK+YEI++ T G R+YA  + +++D
Sbjct: 103 DYMLRRISKLYEIHVYTMGTRAYAERIVEIID 134

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 23/115 (20%)

Query: 4   RQKKLHLVLDLDHTLLH-AVDIDILASK-------------------DREYLMKLGSSSS 43
           R KKL LV+DLD T++H  VD  I   K                   D E ++ L   + 
Sbjct: 171 RDKKLILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMND 230

Query: 44  DGDLFK---MAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           DG + +   +    + VK+RP +++F  + + ++E+++ T   R+YA+ +AK++D
Sbjct: 231 DGSMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVD 285

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 24/107 (22%)

Query: 4   RQKKLHLVLDLDHTLLHA---------------VDIDILASKDREYLMKLGSSSSDGDLF 48
           ++K+L L++DLD T++HA               V+ D+L    R + ++ G S       
Sbjct: 161 QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDV-RSFNLQEGPSGYT---- 215

Query: 49  KMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
                 + +K RP + +FL++ S++YE+++ T G ++YA  +AK++D
Sbjct: 216 ----SCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 258

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 13/96 (13%)

Query: 2   VYRQKKLHLVLDLDHTLLHAVDIDILASKDRE-YLMKLGSSSSDGDLFKMAGELFL-VKL 59
           ++R +KL L++DLD TL+H  +       ++  +  +LG            GE  L  +L
Sbjct: 177 LHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGR-----------GEPMLHTRL 225

Query: 60  RPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           RP+ + FL++ +K+YE+++ T G R YA  +A  LD
Sbjct: 226 RPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLD 261

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 13/96 (13%)

Query: 2   VYRQKKLHLVLDLDHTLLHAVDIDILASKDRE-YLMKLGSSSSDGDLFKMAGELFL-VKL 59
           ++R +KL L++DLD TL+H  +       ++  +  +LG            GE  L  +L
Sbjct: 177 LHRNRKLVLMVDLDQTLIHTTEQHCPQMSNKGIFHFQLGR-----------GEPMLHTRL 225

Query: 60  RPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           RP+ + FL++ +K+YE+++ T G R YA  +A  LD
Sbjct: 226 RPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLD 261

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q5XIK8|CTSL2_RAT CTD small phosphatase-like protein 2 OS=Rattus norvegicus GN=Ctdspl2 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 7   KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
           +  LVLDLD TL+H   ++ L      + +          LF+       V+LRP+ R+F
Sbjct: 286 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 334

Query: 67  LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           L+  S+MYEI L T   + YA  +  +LD K
Sbjct: 335 LERMSQMYEIILFTASKKVYADKLLNILDPK 365

Probable phosphatase.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 7   KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
           +  LVLDLD TL+H   ++ L      + +          LF+       V+LRP+ R+F
Sbjct: 286 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 334

Query: 67  LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           L+  S+MYEI L T   + YA  +  +LD K
Sbjct: 335 LERMSQMYEIILFTASKKVYADKLLNILDPK 365

Probable phosphatase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)

Query: 7   KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
           +  LVLDLD TL+H   ++ L      + +          LF+       V+LRP+ R+F
Sbjct: 287 EFSLVLDLDETLVHC-SLNELEDAALTFPV----------LFQDVIYQVYVRLRPFFREF 335

Query: 67  LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           L+  S+MYEI L T   + YA  +  +LD K
Sbjct: 336 LERMSQMYEIILFTASKKVYADKLLNILDPK 366

Probable phosphatase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
297834668	296	NLI interacting factor family protein [A	0.948	0.310	0.478	6e-16
297792855	305	NLI interacting factor family protein [A	0.938	0.298	0.505	3e-15
297834870	592	NLI interacting factor family protein [A	0.938	0.153	0.47	3e-15
326510557	384	predicted protein [Hordeum vulgare subsp	0.969	0.244	0.437	4e-15
242093742	558	hypothetical protein SORBIDRAFT_10g02558	0.948	0.164	0.414	5e-15
242087817	547	hypothetical protein SORBIDRAFT_09g01931	0.948	0.168	0.414	5e-15
224142399	312	predicted protein [Populus trichocarpa]	0.938	0.291	0.494	5e-15
356564913	442	PREDICTED: RNA polymerase II C-terminal	0.938	0.205	0.505	8e-15
356498756	428	PREDICTED: RNA polymerase II C-terminal	0.938	0.212	0.505	1e-14
226497696	531	CPL3 [Zea mays] gi|195656359|gb|ACG47647	0.948	0.173	0.414	3e-14

>gi|297834668|ref|XP_002885216.1| NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297331056|gb|EFH61475.1| NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 69/94 (73%), Gaps = 2/94 (2%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYI 63
            +KKLHLVLDLDHTLLH++ + IL+  +R YL++   S++  DL+K+  + +L KLRP++
Sbjct: 82  NEKKLHLVLDLDHTLLHSIRVSILSETER-YLIEEACSTTREDLWKLDID-YLTKLRPFV 139

Query: 64  RKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
            +FLKEA++M+ +Y+ T G R YA  + KL+D K
Sbjct: 140 HEFLKEANEMFTMYVYTMGTRVYAESLLKLIDPK 173

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792855|ref|XP_002864312.1| NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297310147|gb|EFH40571.1| NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 65/97 (67%), Gaps = 6/97 (6%)

Query: 2   VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAG---ELFLVK 58
            +  KKLHLVLDLDHTLLH V +  L SK+  YL  +G + S  DL+K  G     FL+K
Sbjct: 85  CFNDKKLHLVLDLDHTLLHTVMVSNL-SKEETYL--IGEADSREDLWKFNGGYSSEFLIK 141

Query: 59  LRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           LRPY+ +FLKEA++M+ +Y+ T G R YA  + KL+D
Sbjct: 142 LRPYVHEFLKEANEMFSMYVYTMGDRDYANNVLKLID 178

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834870|ref|XP_002885317.1| NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297331157|gb|EFH61576.1| NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 9/100 (9%)

Query: 6   KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMA--GEL------FLV 57
           KKLHLVLDLDHTLLH+V +  L+  ++ YL++   S++  DL+KM   G+       +L 
Sbjct: 87  KKLHLVLDLDHTLLHSVRVQFLSEAEK-YLIEEAGSTTREDLWKMKVKGDPIPITIEYLT 145

Query: 58  KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           KLRP++R+FLKEA+K++ +Y+ T G R YA  + KL+D K
Sbjct: 146 KLRPFLREFLKEANKLFTMYVYTKGTRRYAKAILKLIDPK 185

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510557|dbj|BAJ87495.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 67/96 (69%), Gaps = 2/96 (2%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSD--GDLFKMAGELFLVKLRP 61
           R++KL L+LDLDHTL+++  +  +++ +    ++  +S  D  G LF + G   L KLRP
Sbjct: 161 RERKLILILDLDHTLINSTKLHDISAAENNLGIQAAASKDDPNGSLFTLEGMQMLTKLRP 220

Query: 62  YIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           ++RKFLKEAS M+E+Y+ T G ++YA+ +AKLLD +
Sbjct: 221 FVRKFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPR 256

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093742|ref|XP_002437361.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor] gi|241915584|gb|EER88728.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGD--LFKMAGELFLVKLRP 61
           R++KL L+LDLDHTL+++  +  ++S +++  ++  +S  D +  +F +     L KLRP
Sbjct: 161 RERKLVLILDLDHTLINSTKLQDISSAEKDLGIQTAASKDDPNRSIFSLDSMQMLTKLRP 220

Query: 62  YIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           ++R+FLKEAS M+E+Y+ T G ++YA+ +AKLLD
Sbjct: 221 FVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLD 254

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242087817|ref|XP_002439741.1| hypothetical protein SORBIDRAFT_09g019310 [Sorghum bicolor] gi|241945026|gb|EES18171.1| hypothetical protein SORBIDRAFT_09g019310 [Sorghum bicolor]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGD--LFKMAGELFLVKLRP 61
           R++KL L+LDLDHTL+++  +  ++S +++  ++  +S  D +  +F +     L KLRP
Sbjct: 163 RERKLVLILDLDHTLINSTKLQNISSAEKDLGIQTAASKDDPNRSIFALESMQLLTKLRP 222

Query: 62  YIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           ++R+FLKEAS M+E+Y+ T G ++YA+ +AKLLD
Sbjct: 223 FVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLD 256

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142399|ref|XP_002324546.1| predicted protein [Populus trichocarpa] gi|222865980|gb|EEF03111.1| predicted protein [Populus trichocarpa]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSD---GDLFKMAGELFLVKLR 60
           R KKL+L+LDLDHTLL++  + +  + D EYL     S  D   G LF ++    + KLR
Sbjct: 9   RHKKLYLILDLDHTLLNSTQL-MHMTLDEEYLNGQTDSLQDVSKGSLFMLSSMQMMTKLR 67

Query: 61  PYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           P++R FLKEAS+M+E+Y+ T G R+YA+ MAKLLD
Sbjct: 68  PFVRTFLKEASQMFEMYIYTMGDRAYALEMAKLLD 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564913|ref|XP_003550691.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)

Query: 5   QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGS--SSSDGDLFKMAGELFLVKLRPY 62
           +KKL+LVLDLDHTLL++  +  L S++   L +  S  + S G LFK+     + KLRP+
Sbjct: 137 RKKLYLVLDLDHTLLNSTHLAQLTSEELHLLNQTDSLTNVSKGSLFKLEHMNMMTKLRPF 196

Query: 63  IRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           +R FLKEAS+M+E+Y+ T G R YA+ MAKLLD
Sbjct: 197 VRPFLKEASEMFEMYIYTMGDRPYALEMAKLLD 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498756|ref|XP_003518215.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 2/93 (2%)

Query: 5   QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGS--SSSDGDLFKMAGELFLVKLRPY 62
           +KKL+LVLDLDHTLL++  +  L S++   L +  S    S G LFK+     + KLRP+
Sbjct: 123 RKKLYLVLDLDHTLLNSTHLAHLTSEESHLLNQTDSLRDVSKGSLFKLEHMNMMTKLRPF 182

Query: 63  IRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           +R FLKEAS+M+E+Y+ T G R YA+ MAKLLD
Sbjct: 183 VRPFLKEASEMFEMYIYTMGDRPYALEMAKLLD 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226497696|ref|NP_001152445.1| CPL3 [Zea mays] gi|195656359|gb|ACG47647.1| CPL3 [Zea mays]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGD--LFKMAGELFLVKLRP 61
           R++KL L+LDLDHTL+++  +  ++S +++  ++  +S  D +  +F +     L KLRP
Sbjct: 157 RERKLVLILDLDHTLINSTKLQDISSAEKDLGIQSAASKDDPNRSIFALDLMPMLTKLRP 216

Query: 62  YIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           ++R+FLKEAS M+E+Y+ T G ++YA+ +AKLLD
Sbjct: 217 FVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLD 250

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:4010714056	440	CPL4 "C-terminal domain phosph	0.701	0.154	0.441	6.3e-09
TAIR|locus:2090467	296	AT3G17550 [Arabidopsis thalian	0.721	0.236	0.380	3.4e-08
TAIR|locus:2162565	306	AT5G54210 [Arabidopsis thalian	0.670	0.212	0.4	8e-08
TAIR|locus:4515103095	307	AT3G19595 [Arabidopsis thalian	0.711	0.224	0.397	1e-07
TAIR|locus:2012943	342	AT1G20320 [Arabidopsis thalian	0.680	0.192	0.405	2.8e-07
TAIR|locus:2194656	221	AT1G43600 [Arabidopsis thalian	0.670	0.294	0.376	4.2e-07
TAIR|locus:2045044	277	AT2G04930 [Arabidopsis thalian	0.711	0.249	0.383	6.2e-07
TAIR|locus:2194666	255	AT1G43610 [Arabidopsis thalian	0.670	0.254	0.376	6.6e-07
TAIR|locus:2051164	1241	CPL3 "C-terminal domain phosph	0.525	0.041	0.509	4.2e-05
TAIR|locus:2154458	302	AT5G23470 [Arabidopsis thalian	0.711	0.228	0.314	7.2e-05

TAIR|locus:4010714056 CPL4 "C-terminal domain phosphatase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 30/68 (44%), Positives = 43/68 (63%)

Query:    30 KDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVM 89
             K   + ++ G + S G LF +     + KLRP++  FLKEAS+M+ +Y+ T G R+YA  
Sbjct:   150 KSHTHSLQDGCNVSGGSLFLLEFMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQ 209

Query:    90 MAKLLDLK 97
             MAKLLD K
Sbjct:   210 MAKLLDPK 217

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

TAIR|locus:2090467 AT3G17550 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 27/71 (38%), Positives = 48/71 (67%)

Query:    27 LASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSY 86
             L S+  + L++   S++  DL+K+  + +L KLRP++ +FLKEA++++ +Y+ T G R Y
Sbjct:   104 LLSETEKCLIEEACSTTREDLWKLDSD-YLTKLRPFVHEFLKEANELFTMYVYTMGTRVY 162

Query:    87 AVMMAKLLDLK 97
             A  + KL+D K
Sbjct:   163 AESLLKLIDPK 173

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2162565 AT5G54210 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 28/70 (40%), Positives = 45/70 (64%)

Query:    29 SKDREYLMKLGSSSSDGDLFKMAGEL---FLVKLRPYIRKFLKEASKMYEIYLCTTGIRS 85
             +K+  YL++     S  DL ++ G     FL+KLRP++ +FLKEA+KM+ +Y+ T G R 
Sbjct:   109 TKEETYLIE--EEDSREDLRRLNGGYSSEFLIKLRPFVHEFLKEANKMFSMYVYTMGDRD 166

Query:    86 YAVMMAKLLD 95
             YA+ +  L+D
Sbjct:   167 YAMNVLNLID 176

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:4515103095 AT3G19595 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/73 (39%), Positives = 48/73 (65%)

Query:    29 SKDREYLMKLGSSSSDGDLFKM--AGEL--FLVKLRPYIRKFLKEASKMYEIYLCTTGIR 84
             S+  +YL++   S++  DL+K+   G+   FL KLRP++R FLKEA++ + +Y+ T G R
Sbjct:   112 SQAEKYLIEEAGSATRDDLWKIKAVGDPMEFLTKLRPFLRDFLKEANEFFTMYVYTKGSR 171

Query:    85 SYAVMMAKLLDLK 97
              YA  + +L+D K
Sbjct:   172 VYAKQVLELIDPK 184

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2012943 AT1G20320 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:    29 SKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAV 88
             S+  +YL  LG S    DL+ +  E+ L+KLRP++ +FLKEA++++ +Y+ T G R YA 
Sbjct:    97 SEGEKYL--LGESDFREDLWTLDREM-LIKLRPFVHEFLKEANEIFSMYVYTMGNRDYAQ 153

Query:    89 MMAKLLDLK 97
              + K +D K
Sbjct:   154 AVLKWIDPK 162

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2194656 AT1G43600 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 4.2e-07, P = 4.2e-07
 Identities = 26/69 (37%), Positives = 46/69 (66%)

Query:    29 SKDREYLMKLGSSSSDGDLFK--MAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSY 86
             SK  +YL++   + S  DL++  + G  F++KLRP++ +FL EA+K++ +++ T G  SY
Sbjct:    39 SKREKYLLE--ETDSRQDLWRRNVDGYEFIIKLRPFLHEFLLEANKLFTMHVYTMGSSSY 96

Query:    87 AVMMAKLLD 95
             A  + KL+D
Sbjct:    97 AKQVLKLID 105

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2045044 AT2G04930 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 28/73 (38%), Positives = 46/73 (63%)

Query:    29 SKDREYLMKLGSSSSDGDLFKMA--GELF--LVKLRPYIRKFLKEASKMYEIYLCTTGIR 84
             S+   YL++  SS +  DL+K    G     L+KLRP++R FLKEA++M+ +++ T G R
Sbjct:    87 SQAERYLIQEASSRTREDLWKFRPIGHPIDRLIKLRPFVRDFLKEANEMFTMFVYTMGSR 146

Query:    85 SYAVMMAKLLDLK 97
              YA  + +++D K
Sbjct:   147 IYAKAILEMIDPK 159

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2194666 AT1G43610 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 6.6e-07, P = 6.6e-07
 Identities = 26/69 (37%), Positives = 46/69 (66%)

Query:    29 SKDREYLMKLGSSSSDGDLFK--MAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSY 86
             SK  +YL++   + S  DL++  + G  F++KLRP++ +FL EA+K++ +++ T G  SY
Sbjct:    73 SKREKYLLE--ETDSRQDLWRRNVDGYEFIIKLRPFLHEFLLEANKLFTMHVYTMGSSSY 130

Query:    87 AVMMAKLLD 95
             A  + KL+D
Sbjct:   131 AKQVLKLID 139

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2051164 CPL3 "C-terminal domain phosphatase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 26/51 (50%), Positives = 33/51 (64%)

Query:    47 LFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
             LF+        KLRP I  FL++ASK+YE++L T G + YA  MAKLLD K
Sbjct:   970 LFRFLHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPK 1020

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008420 "CTD phosphatase activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

TAIR|locus:2154458 AT5G23470 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query:    27 LASKDREYLMKLGSSSSDGDLFKMA-GELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRS 85
             L  +  +Y+++   S  D   F     E  L+KLRP++ +FLKE ++M+ +Y+ T G   
Sbjct:   105 LLYESEKYIIEEVESRKDIKRFNTGFPEESLIKLRPFVHQFLKECNEMFSMYVYTKGGYD 164

Query:    86 YAVMMAKLLD 95
             YA ++ +++D
Sbjct:   165 YARLVLEMID 174

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
TIGR02250	156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	8e-29
smart00577	148	smart00577, CPDc, catalytic domain of ctd-like pho	4e-21
pfam03031	153	pfam03031, NIF, NLI interacting factor-like phosph	3e-14
TIGR02251	162	TIGR02251, HIF-SF_euk, Dullard-like phosphatase do	9e-09

>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain

 Score =  100 bits (252), Expect = 8e-29
 Identities = 44/96 (45%), Positives = 65/96 (67%), Gaps = 3/96 (3%)

Query: 2  VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDL--FKMAGELFLVKL 59
          + R+KKLHLVLDLD TL+H    D   S+  +Y ++  +S +  DL  F +    +L KL
Sbjct: 1  LLREKKLHLVLDLDQTLIHTT-KDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKL 59

Query: 60 RPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
          RP++ +FLKEASK+YE+++ T G R+YA  +AKL+D
Sbjct: 60 RPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLID 95

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases

 Score = 81.1 bits (201), Expect = 4e-21
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 6  KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRK 65
          KK  LVLDLD TL+H+         +R++++ +        L         VK RP + +
Sbjct: 1  KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPV--------LIDGHPHGVYVKKRPGVDE 52

Query: 66 FLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
          FLK AS+++E+ + T G+R YA  +  LLD
Sbjct: 53 FLKRASELFELVVFTAGLRMYADPVLDLLD 82

Length = 148

>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase

 Score = 63.4 bits (155), Expect = 3e-14
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 16/88 (18%)

Query: 8  LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFL 67
            LVLDLD TL+H+                        D          VK RP + +FL
Sbjct: 1  KTLVLDLDETLVHSSF----------------EPDLPFDFVLNFNHGVYVKKRPGLDEFL 44

Query: 68 KEASKMYEIYLCTTGIRSYAVMMAKLLD 95
          +E SK YEI + T   + YA  +   LD
Sbjct: 45 QELSKYYEIVIFTASSKEYADPVLDKLD 72

This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain. Length = 153

>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain

 Score = 49.2 bits (118), Expect = 9e-09
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 7  KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKF 66
          K  LVLDLD TL+H+           +   K+        L         V  RP++ +F
Sbjct: 1  KKTLVLDLDETLVHST----FKMPKVDADFKVPV------LIDGKIIPVYVFKRPHVDEF 50

Query: 67 LKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
          L+  SK YE+ + T  +  YA  +  +LD  
Sbjct: 51 LERVSKWYELVIFTASLEEYADPVLDILDRG 81

This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" , and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the pfam03031. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	99.95
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.92
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	99.88
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	99.88
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.87
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	99.8
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.78
KOG2832	393	consensus TFIIF-interacting CTD phosphatase, inclu	99.43
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.41
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	98.76
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.66
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.62
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	98.41
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	98.38
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	98.34
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	98.33
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	98.26
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	98.24
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	98.19
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	98.06
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	98.03
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	98.01
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	98.01
PRK08238	479	hypothetical protein; Validated	97.96
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	97.96
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	97.95
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.92
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	97.91
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.88
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	97.83
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	97.74
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.72
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	97.55
PHA02530	300	pseT polynucleotide kinase; Provisional	97.54
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	97.52
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	97.52
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	97.47
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	97.39
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	97.39
COG4996	164	Predicted phosphatase [General function prediction	97.38
PRK11133	322	serB phosphoserine phosphatase; Provisional	97.35
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	97.34
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	97.34
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	97.32
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	97.25
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	97.23
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	97.15
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	97.07
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	97.02
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	97.0
PRK10444	248	UMP phosphatase; Provisional	96.99
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	96.91
PRK10513	270	sugar phosphate phosphatase; Provisional	96.9
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	96.85
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	96.8
PRK06769	173	hypothetical protein; Validated	96.72
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	96.71
PLN02645	311	phosphoglycolate phosphatase	96.7
PRK01158	230	phosphoglycolate phosphatase; Provisional	96.68
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	96.66
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	96.66
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	96.63
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	96.61
PRK10976	266	putative hydrolase; Provisional	96.6
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	96.56
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	96.47
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	96.47
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	96.46
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	96.45
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	96.43
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	96.37
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	96.36
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	96.34
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	96.31
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	96.3
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	96.28
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	96.28
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	96.15
PTZ00174	247	phosphomannomutase; Provisional	96.1
PLN02423	245	phosphomannomutase	96.08
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	96.07
PRK13582	205	thrH phosphoserine phosphatase; Provisional	96.06
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	96.04
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	96.01
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	96.0
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	95.88
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	95.87
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	95.8
PLN02887	580	hydrolase family protein	95.79
PLN02954	224	phosphoserine phosphatase	95.69
PRK13288	214	pyrophosphatase PpaX; Provisional	95.63
COG0241	181	HisB Histidinol phosphatase and related phosphatas	95.57
PRK09449	224	dUMP phosphatase; Provisional	95.56
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	95.54
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	95.53
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	95.5
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	95.49
COG2503	274	Predicted secreted acid phosphatase [General funct	95.44
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	95.42
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	95.4
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	95.32
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	95.21
PRK13222	226	phosphoglycolate phosphatase; Provisional	95.2
PTZ00445	219	p36-lilke protein; Provisional	95.18
PLN03017	366	trehalose-phosphatase	95.14
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	95.13
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	95.05
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	95.04
PRK11590	211	hypothetical protein; Provisional	94.97
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	94.93
PLN02151	354	trehalose-phosphatase	94.92
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	94.91
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	94.84
PRK11587	218	putative phosphatase; Provisional	94.71
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	94.71
PRK14988	224	GMP/IMP nucleotidase; Provisional	94.7
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	94.62
PRK13225	273	phosphoglycolate phosphatase; Provisional	94.48
PLN02580	384	trehalose-phosphatase	94.38
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	94.36
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	94.35
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	94.33
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	94.2
COG4359	220	Uncharacterized conserved protein [Function unknow	94.1
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	94.09
PLN02575	381	haloacid dehalogenase-like hydrolase	94.05
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	94.02
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	94.01
PRK13226	229	phosphoglycolate phosphatase; Provisional	94.01
PRK11587	218	putative phosphatase; Provisional	93.83
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	93.77
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	93.75
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	93.63
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	93.63
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	93.6
PHA02597	197	30.2 hypothetical protein; Provisional	93.59
PRK13223	272	phosphoglycolate phosphatase; Provisional	93.56
PRK10563	221	6-phosphogluconate phosphatase; Provisional	93.53
PRK13288	214	pyrophosphatase PpaX; Provisional	93.35
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	93.29
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	93.23
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	93.15
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	93.09
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	93.09
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	93.08
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	92.98
PRK13226	229	phosphoglycolate phosphatase; Provisional	92.9
PRK11590	211	hypothetical protein; Provisional	92.87
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	92.83
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	92.81
PRK13223	272	phosphoglycolate phosphatase; Provisional	92.8
COG0546	220	Gph Predicted phosphatases [General function predi	92.77
PRK13222	226	phosphoglycolate phosphatase; Provisional	92.36
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	92.31
COG0546	220	Gph Predicted phosphatases [General function predi	92.29
PRK13225	273	phosphoglycolate phosphatase; Provisional	92.22
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	92.22
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	92.17
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	92.13
PRK14988	224	GMP/IMP nucleotidase; Provisional	92.11
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	92.01
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	91.75
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	91.7
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	91.7
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	91.66
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	91.6
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	91.54
PRK10748	238	flavin mononucleotide phosphatase; Provisional	91.51
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	91.24
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	91.07
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	91.02
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	91.0
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	90.95
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	90.94
PLN02940	382	riboflavin kinase	90.89
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	90.81
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	90.57
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	90.53
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	90.48
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	90.45
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	90.3
PRK09449	224	dUMP phosphatase; Provisional	90.2
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	89.38
PRK10563	221	6-phosphogluconate phosphatase; Provisional	89.2
PLN02954	224	phosphoserine phosphatase	89.1
PRK13582	205	thrH phosphoserine phosphatase; Provisional	88.85
PHA02597	197	30.2 hypothetical protein; Provisional	88.77
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	88.71
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	88.63
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	88.56
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	88.49
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	88.49
PLN02575	381	haloacid dehalogenase-like hydrolase	88.43
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	88.41
PLN02811	220	hydrolase	88.33
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	88.3
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	87.25
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	87.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	86.98
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	85.94
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	85.89
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	85.84
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	85.66
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	85.6
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	85.55
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	85.31
PLN02940	382	riboflavin kinase	85.11
PLN02382	413	probable sucrose-phosphatase	84.84
PF05822	246	UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); Inter	84.8
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	84.53
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	83.79
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	83.59
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	82.97
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	82.63
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	82.2
PRK10748	238	flavin mononucleotide phosphatase; Provisional	82.2
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	82.18
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	81.28

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=99.95  E-value=3.1e-27  Score=159.27  Aligned_cols=95  Identities=43%  Similarity=0.681  Sum_probs=76.3

Q ss_pred             CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhC--CCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEE
Q 040601            2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLG--SSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLC   79 (97)
Q Consensus         2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~   79 (97)
                      |++++|++||||||||||||+..+..+.+ +.+.....  +...+...|.+++..+++++|||+.+||+++++.|+++||
T Consensus         1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~   79 (156)
T TIGR02250         1 LLREKKLHLVLDLDQTLIHTTKDPTLSEW-EKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVY   79 (156)
T ss_pred             CCcCCceEEEEeCCCCcccccccCccchh-hhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEE
Confidence            68999999999999999999988754443 22211110  1112345566667889999999999999999999999999


Q ss_pred             eCCchHHHHHHHHhhCCC
Q 040601           80 TTGIRSYAVMMAKLLDLK   97 (97)
Q Consensus        80 T~~~~~YA~~v~~~LDP~   97 (97)
                      |++.++||++|++.|||+
T Consensus        80 T~~~~~yA~~vl~~ldp~   97 (156)
T TIGR02250        80 TMGTRAYAQAIAKLIDPD   97 (156)
T ss_pred             eCCcHHHHHHHHHHhCcC
Confidence            999999999999999995

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=99.92  E-value=3.9e-25  Score=149.43  Aligned_cols=81  Identities=31%  Similarity=0.351  Sum_probs=63.6

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchHH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSY   86 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~Y   86 (97)
                      |++||||||||||||+..+.....  .+ ..       ...+..+...+||++|||+.+||+++++.||++|||++++.|
T Consensus         1 k~~lvlDLDeTLi~~~~~~~~~~~--~~-~~-------~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~y   70 (162)
T TIGR02251         1 KKTLVLDLDETLVHSTFKMPKVDA--DF-KV-------PVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEY   70 (162)
T ss_pred             CcEEEEcCCCCcCCCCCCCCCCCC--ce-EE-------EEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHH
Confidence            689999999999999876521111  00 00       111122356899999999999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 040601           87 AVMMAKLLDLK   97 (97)
Q Consensus        87 A~~v~~~LDP~   97 (97)
                      |++|++.|||.
T Consensus        71 A~~il~~ldp~   81 (162)
T TIGR02251        71 ADPVLDILDRG   81 (162)
T ss_pred             HHHHHHHHCcC
Confidence            99999999984

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=99.88  E-value=1.8e-23  Score=150.71  Aligned_cols=83  Identities=30%  Similarity=0.355  Sum_probs=66.6

Q ss_pred             cCCCCceEEEeCCCeeeeeec--cCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEe
Q 040601            3 YRQKKLHLVLDLDHTLLHAVD--IDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCT   80 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T   80 (97)
                      -.++|++||||||||||||+.  .+...+    ++..       ++.+......+||.+|||+++||.+++++||+++||
T Consensus        85 ~~~~kk~lVLDLDeTLvHss~~~~~~~~~----d~~~-------~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FT  153 (262)
T KOG1605|consen   85 ATVGRKTLVLDLDETLVHSSLNLKPIVNA----DFTV-------PVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFT  153 (262)
T ss_pred             ccCCCceEEEeCCCcccccccccCCCCCc----ceee-------eeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHH
Confidence            357899999999999999994  331111    1111       222333357899999999999999999999999999


Q ss_pred             CCchHHHHHHHHhhCC
Q 040601           81 TGIRSYAVMMAKLLDL   96 (97)
Q Consensus        81 ~~~~~YA~~v~~~LDP   96 (97)
                      |+.+.||++|+++|||
T Consensus       154 As~~~Ya~~v~D~LD~  169 (262)
T KOG1605|consen  154 ASLEVYADPLLDILDP  169 (262)
T ss_pred             hhhHHHHHHHHHHccC
Confidence            9999999999999998

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=99.88  E-value=3e-22  Score=133.58  Aligned_cols=75  Identities=36%  Similarity=0.437  Sum_probs=57.3

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchHHH
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYA   87 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA   87 (97)
                      ++|||||||||||+...+..+..             ... .. ....+++++|||+++||+++++.||++|||++++.||
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~-------------~~~-~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya   65 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYD-------------FKI-ID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYA   65 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-S-------------EEE-ET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHH
T ss_pred             CEEEEeCCCcEEEEeecCCCCcc-------------cce-ec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhh
Confidence            68999999999999876432110             000 01 2467899999999999999999999999999999999


Q ss_pred             HHHHHhhCCC
Q 040601           88 VMMAKLLDLK   97 (97)
Q Consensus        88 ~~v~~~LDP~   97 (97)
                      ++|++.|||+
T Consensus        66 ~~v~~~ldp~   75 (159)
T PF03031_consen   66 EPVLDALDPN   75 (159)
T ss_dssp             HHHHHHHTTT
T ss_pred             hHHHHhhhhh
Confidence            9999999993

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=99.87  E-value=3.5e-22  Score=138.99  Aligned_cols=67  Identities=28%  Similarity=0.360  Sum_probs=58.0

Q ss_pred             cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCC
Q 040601            3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTG   82 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~   82 (97)
                      -+.+|++|||||||||||+....                           ...++.+|||+++||+.++++|||+||||+
T Consensus        17 ~~~~kklLVLDLDeTLvh~~~~~---------------------------~~~~~~kRP~l~eFL~~~~~~feIvVwTAa   69 (195)
T TIGR02245        17 PREGKKLLVLDIDYTLFDHRSPA---------------------------ETGEELMRPYLHEFLTSAYEDYDIVIWSAT   69 (195)
T ss_pred             CCCCCcEEEEeCCCceEcccccC---------------------------CCceEEeCCCHHHHHHHHHhCCEEEEEecC
Confidence            46789999999999999984311                           123678999999999999999999999999


Q ss_pred             chHHHHHHHHhhCC
Q 040601           83 IRSYAVMMAKLLDL   96 (97)
Q Consensus        83 ~~~YA~~v~~~LDP   96 (97)
                      ++.||+++++.|++
T Consensus        70 ~~~ya~~~l~~l~~   83 (195)
T TIGR02245        70 SMKWIEIKMTELGV   83 (195)
T ss_pred             CHHHHHHHHHHhcc
Confidence            99999999998864

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.80  E-value=4.5e-20  Score=145.40  Aligned_cols=94  Identities=48%  Similarity=0.780  Sum_probs=80.4

Q ss_pred             cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCC-CCCCceeeec----ceEEEEEecchHHHHHHHHhhcceEE
Q 040601            3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSS-SSDGDLFKMA----GELFLVKLRPYIRKFLKEASKMYEIY   77 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~v~~RP~~~~FL~~ls~~~ei~   77 (97)
                      ++++++.||+|||+||+|+...+.+..+ +++++.+..+ .++..++.++    ...++|++|||+.+||+.+++.||++
T Consensus       142 ~~~~~L~lv~Dld~tllh~~~~~~l~e~-~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemh  220 (635)
T KOG0323|consen  142 LNRKKLHLVLDLDHTLLHTILKSDLSET-EKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMH  220 (635)
T ss_pred             HhhhcceeehhhhhHHHHhhccchhhhh-hhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeE
Confidence            5667789999999999999998887777 6777776554 3445555554    36899999999999999999999999


Q ss_pred             EEeCCchHHHHHHHHhhCCC
Q 040601           78 LCTTGIRSYAVMMAKLLDLK   97 (97)
Q Consensus        78 i~T~~~~~YA~~v~~~LDP~   97 (97)
                      |||.|.+.||..|+++|||+
T Consensus       221 VyTmg~R~YA~~i~~liDP~  240 (635)
T KOG0323|consen  221 VYTMGTRDYALEIAKLIDPE  240 (635)
T ss_pred             EEeccchHHHHHHHHHhCCC
Confidence            99999999999999999996

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.78  E-value=7.1e-19  Score=116.93  Aligned_cols=83  Identities=36%  Similarity=0.430  Sum_probs=63.0

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchH
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRS   85 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~   85 (97)
                      ||++|||||||||||++..+.. ++ .+      +...-...+......+++.+|||+.+||+++.+.|+++|||++.+.
T Consensus         1 ~k~~lvldld~tl~~~~~~~~~-~~-~~------~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~   72 (148)
T smart00577        1 KKKTLVLDLDETLVHSTHRSFK-EW-TN------RDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRM   72 (148)
T ss_pred             CCcEEEEeCCCCeECCCCCcCC-CC-Cc------cceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHH
Confidence            6899999999999999753221 11 00      0000011122335688999999999999999999999999999999


Q ss_pred             HHHHHHHhhCC
Q 040601           86 YAVMMAKLLDL   96 (97)
Q Consensus        86 YA~~v~~~LDP   96 (97)
                      ||+.+++.+|+
T Consensus        73 ~~~~il~~l~~   83 (148)
T smart00577       73 YADPVLDLLDP   83 (148)
T ss_pred             HHHHHHHHhCc
Confidence            99999999987

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=99.43  E-value=1.7e-13  Score=102.33  Aligned_cols=68  Identities=28%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      .+.+.||||+|.++|||..+.-.                          ..+.+++|||++.||..++++|||+|||+..
T Consensus       186 ~Qp~yTLVleledvLVhpdws~~--------------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~  239 (393)
T KOG2832|consen  186 EQPPYTLVLELEDVLVHPDWSYK--------------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQ  239 (393)
T ss_pred             cCCCceEEEEeeeeEeccchhhh--------------------------cCceeccCchHHHHHHhhcccceEEEEecCC
Confidence            36789999999999999977421                          1247889999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCC
Q 040601           84 RSYAVMMAKLLDLK   97 (97)
Q Consensus        84 ~~YA~~v~~~LDP~   97 (97)
                      .-||.++++.|||+
T Consensus       240 gmt~~pl~d~lDP~  253 (393)
T KOG2832|consen  240 GMTVFPLLDALDPK  253 (393)
T ss_pred             ccchhhhHhhcCCc
Confidence            99999999999995

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.41  E-value=3.5e-13  Score=101.90  Aligned_cols=83  Identities=30%  Similarity=0.366  Sum_probs=65.0

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      .+.+.+|++|||+||+||+.... ..  ++ +...       .........+||..|||+.+|+..+++.|++++||++.
T Consensus       209 ~~~~k~L~l~lde~l~~S~~~~~-~~--~d-f~~~-------~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~  277 (390)
T COG5190         209 TSPKKTLVLDLDETLVHSSFRYI-TL--LD-FLVK-------VEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASV  277 (390)
T ss_pred             CCCccccccCCCccceeeccccc-cc--cc-hhhc-------cccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecch
Confidence            35689999999999999987531 11  11 2211       11111236889999999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCC
Q 040601           84 RSYAVMMAKLLDLK   97 (97)
Q Consensus        84 ~~YA~~v~~~LDP~   97 (97)
                      +.||++|+++||++
T Consensus       278 ~~y~~~v~d~l~~~  291 (390)
T COG5190         278 KRYADPVLDILDSD  291 (390)
T ss_pred             hhhcchHHHhcccc
Confidence            99999999999974

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=98.76  E-value=6.4e-09  Score=78.95  Aligned_cols=94  Identities=31%  Similarity=0.382  Sum_probs=69.4

Q ss_pred             CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhh-hCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEe
Q 040601            2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMK-LGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCT   80 (97)
Q Consensus         2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T   80 (97)
                      |-.++++.||.|+|.|.+||...+..+.. .+.... ...+..+ ..+....+.++++.||++..|+...++.||+.++|
T Consensus        21 l~q~~~~~l~~~~~~~~~h~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~   98 (390)
T COG5190          21 LRQDKKLILVVDLDQTIIHTTVDPNDPNN-VNQSLERTLKSVND-RDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYT   98 (390)
T ss_pred             hhcCcccccccccccceecccccCCCCCc-hhhhhhccccchhc-cccccccccceeeecccccchhhhhchhcceeeEe
Confidence            34678899999999999999987632222 111000 0001111 11222257899999999999999999999999999


Q ss_pred             CCchHHHHHHHHhhCCC
Q 040601           81 TGIRSYAVMMAKLLDLK   97 (97)
Q Consensus        81 ~~~~~YA~~v~~~LDP~   97 (97)
                      .|+++||+.+..++||.
T Consensus        99 ~~~~~~~~~~~~i~d~~  115 (390)
T COG5190          99 MGTRAYAERIAKIIDPT  115 (390)
T ss_pred             eccccchhhhhhccccc
Confidence            99999999999999995

>TIGR01684 viral_ppase viral phosphatase

Probab=98.66  E-value=6.3e-08  Score=71.36  Aligned_cols=59  Identities=27%  Similarity=0.332  Sum_probs=50.0

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEec-chHHHHHHHHh-hcceEEEEeCC
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLR-PYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~R-P~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      +.+..+|+||||||+-...                                -|.+| ||+.+.|++|. +++.++|+|++
T Consensus       124 ~~~kvIvFDLDgTLi~~~~--------------------------------~v~irdPgV~EaL~~LkekGikLaIaTS~  171 (301)
T TIGR01684       124 EPPHVVVFDLDSTLITDEE--------------------------------PVRIRDPRIYDSLTELKKRGCILVLWSYG  171 (301)
T ss_pred             ccceEEEEecCCCCcCCCC--------------------------------ccccCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4567899999999997742                                14478 99999999995 56999999999


Q ss_pred             chHHHHHHHHhhC
Q 040601           83 IRSYAVMMAKLLD   95 (97)
Q Consensus        83 ~~~YA~~v~~~LD   95 (97)
                      .+++|..+++.++
T Consensus       172 ~Re~v~~~L~~lG  184 (301)
T TIGR01684       172 DRDHVVESMRKVK  184 (301)
T ss_pred             CHHHHHHHHHHcC
Confidence            9999999998765

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.62  E-value=7.2e-08  Score=71.10  Aligned_cols=60  Identities=27%  Similarity=0.341  Sum_probs=50.7

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEec-chHHHHHHHHh-hcceEEEEeC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLR-PYIRKFLKEAS-KMYEIYLCTT   81 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~R-P~~~~FL~~ls-~~~ei~i~T~   81 (97)
                      .+.+..+|+||||||+....                                -|.+| |++.+.|++|. +++.++|+|+
T Consensus       125 ~~~~~~i~~D~D~TL~~~~~--------------------------------~v~irdp~V~EtL~eLkekGikLaIvTN  172 (303)
T PHA03398        125 WEIPHVIVFDLDSTLITDEE--------------------------------PVRIRDPFVYDSLDELKERGCVLVLWSY  172 (303)
T ss_pred             eeeccEEEEecCCCccCCCC--------------------------------ccccCChhHHHHHHHHHHCCCEEEEEcC
Confidence            45678899999999998732                                14478 99999999995 5799999999


Q ss_pred             CchHHHHHHHHhhC
Q 040601           82 GIRSYAVMMAKLLD   95 (97)
Q Consensus        82 ~~~~YA~~v~~~LD   95 (97)
                      +.+++|..+++.+.
T Consensus       173 g~Re~v~~~Le~lg  186 (303)
T PHA03398        173 GNREHVVHSLKETK  186 (303)
T ss_pred             CChHHHHHHHHHcC
Confidence            99999999998764

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=98.41  E-value=8.4e-07  Score=55.32  Aligned_cols=61  Identities=25%  Similarity=0.236  Sum_probs=48.4

Q ss_pred             eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh-cceEEEEeCCchHHH
Q 040601            9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYA   87 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA   87 (97)
                      ++|+|+|+||.........                          ......+|++.++|+.+.+ .+.++|.|++.+.++
T Consensus         1 ~~vfD~D~tl~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~   54 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE--------------------------IEELELYPGVKEALKELKEKGIKLALATNKSRREV   54 (139)
T ss_pred             CeEEccCCceEccCccccc--------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHH
Confidence            4799999999887542110                          1235689999999999965 599999999999999


Q ss_pred             HHHHHhhC
Q 040601           88 VMMAKLLD   95 (97)
Q Consensus        88 ~~v~~~LD   95 (97)
                      ..+++.+.
T Consensus        55 ~~~~~~~~   62 (139)
T cd01427          55 LELLEELG   62 (139)
T ss_pred             HHHHHHcC
Confidence            99987653

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=98.38  E-value=7.2e-07  Score=57.88  Aligned_cols=38  Identities=16%  Similarity=0.106  Sum_probs=33.6

Q ss_pred             EecchHHHHHHHH-hhcceEEEEeCC-chHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEA-SKMYEIYLCTTG-IRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~l-s~~~ei~i~T~~-~~~YA~~v~~~LD   95 (97)
                      ...||+.++|+.+ ++.+.++|.|++ .+.++..+++...
T Consensus        29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~   68 (128)
T TIGR01681        29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE   68 (128)
T ss_pred             HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence            5889999999999 468999999999 9999999887643

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=98.34  E-value=2.3e-06  Score=54.95  Aligned_cols=62  Identities=24%  Similarity=0.201  Sum_probs=46.7

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc---
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI---   83 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~---   83 (97)
                      +.+++|+|+||++..  .....+                        -.....||+.++|+.|. ..+.++|.|++.   
T Consensus         1 k~~~~D~dgtL~~~~--~~~~~~------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~   54 (132)
T TIGR01662         1 KGVVLDLDGTLTDDV--PYVDDE------------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIG   54 (132)
T ss_pred             CEEEEeCCCceecCC--CCCCCH------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCcccc
Confidence            368999999999641  111111                        02347899999999994 679999999999   


Q ss_pred             -----hHHHHHHHHhhC
Q 040601           84 -----RSYAVMMAKLLD   95 (97)
Q Consensus        84 -----~~YA~~v~~~LD   95 (97)
                           ..+++++++.+.
T Consensus        55 ~~~~~~~~~~~~l~~~~   71 (132)
T TIGR01662        55 RGKFSSGRVARRLEELG   71 (132)
T ss_pred             ccHHHHHHHHHHHHHCC
Confidence                 888888887654

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=98.33  E-value=2.6e-06  Score=61.01  Aligned_cols=87  Identities=14%  Similarity=0.158  Sum_probs=52.0

Q ss_pred             CCCCceEEEeCCCeeeeeecc-----CccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEE
Q 040601            4 RQKKLHLVLDLDHTLLHAVDI-----DILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIY   77 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~   77 (97)
                      .++++.++|||||||+.|+..     +..++....++..+    .....+. ....-.....|++.+||+.+ .+.+.++
T Consensus        60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~----~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G~~i~  134 (237)
T TIGR01672        60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQ----VFWEKVN-NGWDEFSIPKEVARQLIDMHQRRGDAIF  134 (237)
T ss_pred             CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcCh----HHHHHHH-HhcccCCcchhHHHHHHHHHHHCCCEEE
Confidence            344569999999999999762     10111100111110    0000000 01122334566699999999 5689999


Q ss_pred             EEeCC----chHHHHHHHHhhC
Q 040601           78 LCTTG----IRSYAVMMAKLLD   95 (97)
Q Consensus        78 i~T~~----~~~YA~~v~~~LD   95 (97)
                      |.|+.    .+.+++.+++.+.
T Consensus       135 iVTnr~~~k~~~~a~~ll~~lG  156 (237)
T TIGR01672       135 FVTGRTPGKTDTVSKTLAKNFH  156 (237)
T ss_pred             EEeCCCCCcCHHHHHHHHHHhC
Confidence            99998    6779999987653

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=98.26  E-value=5.9e-06  Score=56.68  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC-ch
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG-IR   84 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~-~~   84 (97)
                      +..+|+|||.||..-....-..+.   +-..  +..+..+   .....--+.++||+.++|+.| ++.+.+.|.|++ ..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~---~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~   73 (174)
T TIGR01685         2 PRVIVFDLDGTLWDHYMISLLGGP---FKPV--KQNNSII---IDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVP   73 (174)
T ss_pred             CcEEEEeCCCCCcCcccccccCCC---ceec--cCCCCeE---EeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCCh
Confidence            357899999999866543321111   0000  0000000   011223567899999999999 578999999998 99


Q ss_pred             HHHHHHHHhhC
Q 040601           85 SYAVMMAKLLD   95 (97)
Q Consensus        85 ~YA~~v~~~LD   95 (97)
                      .+++.+++.++
T Consensus        74 ~~~~~~L~~~~   84 (174)
T TIGR01685        74 EWAYEILGTFE   84 (174)
T ss_pred             HHHHHHHHhCC
Confidence            99999988765

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=98.24  E-value=4.5e-06  Score=55.00  Aligned_cols=53  Identities=23%  Similarity=0.082  Sum_probs=39.9

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCch
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIR   84 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~   84 (97)
                      +++++|+||||+..........+                        --+...||+.++|+.| .+.|.++|.|++.+
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~~------------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~   54 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRSL------------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQSG   54 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCCH------------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCCc
Confidence            36899999999998653211111                        0135789999999999 57899999999874

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=98.19  E-value=1e-05  Score=54.83  Aligned_cols=67  Identities=21%  Similarity=0.150  Sum_probs=46.1

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~   85 (97)
                      ++.+++|+||||+-+.........                      ..-+....||+.+.|+.| .+.+.++|.|++...
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~~~~~~----------------------~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~   70 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGKVFPTS----------------------ASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGI   70 (166)
T ss_pred             CcEEEEeCCCceEecCCCCcccCC----------------------hHHeEEecCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence            467899999999976431100000                      001334679999999999 578999999998763


Q ss_pred             ------------HHHHHHHhhC
Q 040601           86 ------------YAVMMAKLLD   95 (97)
Q Consensus        86 ------------YA~~v~~~LD   95 (97)
                                  +++.+++.++
T Consensus        71 ~~~~~~~~~~~~~i~~~l~~~g   92 (166)
T TIGR01664        71 GRGKLSAESFKNKIEAFLEKLK   92 (166)
T ss_pred             ccCcccHHHHHHHHHHHHHHcC
Confidence                        5666776654

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=98.06  E-value=1.7e-05  Score=57.71  Aligned_cols=82  Identities=22%  Similarity=0.157  Sum_probs=48.5

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      +.+|+.+|+|+|||++..+...   .+    ........ +...+.--...--...-||+.+||+.+ ++...+++.|+.
T Consensus        72 ~~kp~AVV~DIDeTvLdns~y~---~~----~~~~~~~~-~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR  143 (266)
T TIGR01533        72 KDKKYAIVLDLDETVLDNSPYQ---GY----QVLNNKPF-DPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNR  143 (266)
T ss_pred             CCCCCEEEEeCccccccChHHH---HH----HhcCCCcC-CHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCC
Confidence            4678999999999999876320   00    00000000 000000000011234679999999999 677899999998


Q ss_pred             chHHHHHHHHh
Q 040601           83 IRSYAVMMAKL   93 (97)
Q Consensus        83 ~~~YA~~v~~~   93 (97)
                      .....+...+.
T Consensus       144 ~~~~~~~T~~~  154 (266)
T TIGR01533       144 SEKEKAATLKN  154 (266)
T ss_pred             CcchHHHHHHH
Confidence            87776655443

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=98.03  E-value=2.4e-05  Score=53.52  Aligned_cols=81  Identities=22%  Similarity=0.207  Sum_probs=46.0

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEe-CCc
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCT-TGI   83 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T-~~~   83 (97)
                      -++.+|+|||.||-.........+.    +...   .......  .....-+.+.|++.+.|+.+. ...++++.| +..
T Consensus         2 ~PklvvFDLD~TlW~~~~~~~~~~P----f~~~---~~~~~v~--D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~   72 (169)
T PF12689_consen    2 LPKLVVFDLDYTLWPPWMDTHVGPP----FKKI---SNGNVVV--DSRGEEVSLYPDVPEILQELKERGVKLAVASRTDE   72 (169)
T ss_dssp             S-SEEEE-STTTSSSS-TTTSS-S-----EEE----TTS--EE--ETT--EE---TTHHHHHHHHHHCT--EEEEE--S-
T ss_pred             CCcEEEEcCcCCCCchhHhhccCCC----ceec---CCCCEEE--eCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCC
Confidence            4678999999999877655433221    0000   0000111  123446889999999999995 689999999 567


Q ss_pred             hHHHHHHHHhhC
Q 040601           84 RSYAVMMAKLLD   95 (97)
Q Consensus        84 ~~YA~~v~~~LD   95 (97)
                      ++.|+++++.|+
T Consensus        73 P~~A~~~L~~l~   84 (169)
T PF12689_consen   73 PDWARELLKLLE   84 (169)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             hHHHHHHHHhcC
Confidence            899999999875

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=98.01  E-value=3e-06  Score=58.48  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=35.3

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.+||+.+. +.+.++|.|++...+++.+++.+.
T Consensus        83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~  123 (219)
T TIGR00338        83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLG  123 (219)
T ss_pred             cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence            3568999999999995 579999999999999999998753

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=98.01  E-value=2.3e-05  Score=52.91  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC----
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG----   82 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~----   82 (97)
                      +.+.||.||||++..... ....                      ..-.++..||+.++|+.|. +.|.++|.||.    
T Consensus         2 ~~~~~d~dg~l~~~~~~~-~~~~----------------------~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~   58 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSD-FQVD----------------------ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLG   58 (161)
T ss_pred             CEEEEeCCCCccccCCCc-cccC----------------------CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            578999999999953211 0000                      0114678999999999996 57999999996    


Q ss_pred             -----------chHHHHHHHHhhC
Q 040601           83 -----------IRSYAVMMAKLLD   95 (97)
Q Consensus        83 -----------~~~YA~~v~~~LD   95 (97)
                                 ...++..+++.++
T Consensus        59 ~~~~~~~~~~~~~~~~~~~l~~~g   82 (161)
T TIGR01261        59 TPSFPQADFDGPHNLMLQIFRSQG   82 (161)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHCC
Confidence                       3667888877643

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>PRK08238 hypothetical protein; Validated

Probab=97.96  E-value=5.9e-06  Score=64.43  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+|++.++++++ ++.+.++|.|++.+.+++++++++.
T Consensus        72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG  110 (479)
T PRK08238         72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG  110 (479)
T ss_pred             CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence            4789999999999 6789999999999999999998864

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=97.96  E-value=3.8e-05  Score=55.05  Aligned_cols=87  Identities=13%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCC-CCCceee--ecceEEEEEecchHHHHHHHH-hhcceEEEEe
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSS-SDGDLFK--MAGELFLVKLRPYIRKFLKEA-SKMYEIYLCT   80 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T   80 (97)
                      ++|+.+++|+|||+++++...-.. .  ..+....... ++...+.  ..+...+....||+.+||+.+ ++.+++++-|
T Consensus        61 ~~p~av~~DIDeTvldnsp~~~~~-~--~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVT  137 (237)
T PRK11009         61 RPPMAVGFDIDDTVLFSSPGFWRG-K--KTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFIT  137 (237)
T ss_pred             CCCcEEEEECcCccccCCchheee-e--eccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEe
Confidence            346699999999999975422111 1  0010000000 0000000  011234566788899999999 7899999999


Q ss_pred             C----CchHHHHHHHHhh
Q 040601           81 T----GIRSYAVMMAKLL   94 (97)
Q Consensus        81 ~----~~~~YA~~v~~~L   94 (97)
                      +    ....+++.+++.+
T Consensus       138 nR~~~k~~~t~~~Llk~~  155 (237)
T PRK11009        138 GRTATKTETVSKTLADDF  155 (237)
T ss_pred             CCCCcccHHHHHHHHHHc
Confidence            9    4567888887644

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=97.95  E-value=4.6e-05  Score=51.53  Aligned_cols=51  Identities=18%  Similarity=0.072  Sum_probs=37.3

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      +.+.||.||||+-....  ....                        --+.+.||+.++|++|. +.|.++|.||+..
T Consensus         2 ~~~~~D~Dgtl~~~~~~--~~~~------------------------~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~   53 (176)
T TIGR00213         2 KAIFLDRDGTINIDHGY--VHEI------------------------DNFEFIDGVIDALRELKKMGYALVLVTNQSG   53 (176)
T ss_pred             CEEEEeCCCCEeCCCCC--CCCH------------------------HHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            56899999999942111  1111                        02447799999999995 6799999999985

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.92  E-value=4.6e-05  Score=60.15  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=49.4

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      +.+.+.+.||+||||+.+......+..              ..        =|..+.||+.+.|+.| .+.|.++|+||.
T Consensus       165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~--------------~~--------d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ  222 (526)
T TIGR01663       165 KGQEKIAGFDLDGTIIKTKSGKVFPKG--------------PD--------DWQIIFPEIPEKLKELEADGFKICIFTNQ  222 (526)
T ss_pred             CccCcEEEEECCCCccccCCCccCCCC--------------HH--------HeeecccCHHHHHHHHHHCCCEEEEEECC
Confidence            456789999999999976431111100              00        0334679999999999 578999999998


Q ss_pred             ch------------HHHHHHHHhhC
Q 040601           83 IR------------SYAVMMAKLLD   95 (97)
Q Consensus        83 ~~------------~YA~~v~~~LD   95 (97)
                      ..            ..++.+++.++
T Consensus       223 ~gI~~G~~~~~~~~~ki~~iL~~lg  247 (526)
T TIGR01663       223 GGIARGKINADDFKAKIEAIVAKLG  247 (526)
T ss_pred             cccccCcccHHHHHHHHHHHHHHcC
Confidence            77            56777877664

Note that the EC number for the kinase function is: 2.7.1.78

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=97.91  E-value=5.7e-05  Score=51.12  Aligned_cols=53  Identities=13%  Similarity=-0.034  Sum_probs=38.2

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      .+.+++|+||||+-....  ....    .                   -.+...||+.++|++|. +.+.++|.|+++.
T Consensus         3 ~~~~~~d~~~t~~~~~~~--~~~~----~-------------------~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~   56 (181)
T PRK08942          3 MKAIFLDRDGVINVDSDG--YVKS----P-------------------DEWIPIPGSIEAIARLKQAGYRVVVATNQSG   56 (181)
T ss_pred             ccEEEEECCCCcccCCcc--ccCC----H-------------------HHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            578999999998655321  1110    0                   02457899999999996 4699999999873

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.88  E-value=4.7e-05  Score=56.00  Aligned_cols=61  Identities=23%  Similarity=0.184  Sum_probs=47.6

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh-cceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK-MYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~   82 (97)
                      -+.+-.+|+|||+|||-....-.+                               .-|.+.+-|.++.+ +.-+++|+.|
T Consensus       119 ~~~phVIVfDlD~TLItd~~~v~I-------------------------------r~~~v~~sL~~Lk~~g~vLvLWSyG  167 (297)
T PF05152_consen  119 WEPPHVIVFDLDSTLITDEGDVRI-------------------------------RDPAVYDSLRELKEQGCVLVLWSYG  167 (297)
T ss_pred             CCCCcEEEEECCCcccccCCcccc-------------------------------CChHHHHHHHHHHHcCCEEEEecCC
Confidence            356678999999999987542110                               23678889999964 5589999999


Q ss_pred             chHHHHHHHHhhC
Q 040601           83 IRSYAVMMAKLLD   95 (97)
Q Consensus        83 ~~~YA~~v~~~LD   95 (97)
                      .+++|...++.++
T Consensus       168 ~~eHV~~sl~~~~  180 (297)
T PF05152_consen  168 NREHVRHSLKELK  180 (297)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999988765

>TIGR01686 FkbH FkbH-like domain

Probab=97.83  E-value=3.8e-05  Score=56.67  Aligned_cols=65  Identities=22%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      .++++|+|||+||.....-.. ...                     +.. .....||+.++|+.+. +.+.+.|.|++.+
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~-g~~---------------------~i~-~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~   58 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGED-GID---------------------NLN-LSPLHKTLQEKIKTLKKQGFLLALASKNDE   58 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccC-Ccc---------------------ccc-cCccHHHHHHHHHHHHhCCCEEEEEcCCCH
Confidence            468999999999997653210 000                     000 1225899999999994 7899999999999


Q ss_pred             HHHHHHHHh
Q 040601           85 SYAVMMAKL   93 (97)
Q Consensus        85 ~YA~~v~~~   93 (97)
                      ..|..+++.
T Consensus        59 ~~a~~~l~~   67 (320)
T TIGR01686        59 DDAKKVFER   67 (320)
T ss_pred             HHHHHHHHh
Confidence            999999886

The C-terminal portion of this domain is unique to this family (by BLAST).

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=97.74  E-value=4e-05  Score=51.65  Aligned_cols=53  Identities=25%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      +.+.+|+|||||........+..              ...        |...-|++.+-|+++ .+.|.|+|+||.
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~--------------~~D--------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ   54 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKD--------------PDD--------WKFFPPGVPEALRELHKKGYKIVIVTNQ   54 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SS--------------TCG--------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred             CEEEEeCCCCccCCCCCCcCcCC--------------HHH--------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence            36789999999999653221110              000        345678999999999 468999999996

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=97.72  E-value=5.9e-05  Score=53.38  Aligned_cols=38  Identities=13%  Similarity=-0.047  Sum_probs=33.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.|. +.+.++|.|++.+.+++.+++.+
T Consensus        98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~  136 (253)
T TIGR01422        98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA  136 (253)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH
Confidence            578899999999994 67999999999999999998754

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=97.55  E-value=0.00024  Score=44.45  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=23.8

Q ss_pred             ecchHHHHHHHHh-hcceEEEEeCCc----hHHHHHH
Q 040601           59 LRPYIRKFLKEAS-KMYEIYLCTTGI----RSYAVMM   90 (97)
Q Consensus        59 ~RP~~~~FL~~ls-~~~ei~i~T~~~----~~YA~~v   90 (97)
                      .-||+.+|++.+. ....+++.||++    .+|++..
T Consensus        15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L   51 (101)
T PF13344_consen   15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL   51 (101)
T ss_dssp             E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred             cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence            3489999999995 569999999998    4555544

...

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.54  E-value=0.00023  Score=51.44  Aligned_cols=70  Identities=16%  Similarity=0.065  Sum_probs=52.2

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      +.++..+++|+|+||......... .|    ..                 ..-....|++.++|+.+. +.+.++|.|+.
T Consensus       155 ~~~~~~~~~D~dgtl~~~~~~~~~-~~----~~-----------------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r  212 (300)
T PHA02530        155 PGLPKAVIFDIDGTLAKMGGRSPY-DW----TK-----------------VKEDKPNPMVVELVKMYKAAGYEIIVVSGR  212 (300)
T ss_pred             CCCCCEEEEECCCcCcCCCCCCcc-ch----hh-----------------cccCCCChhHHHHHHHHHhCCCEEEEEeCC
Confidence            345688999999999977542110 11    00                 012347899999999994 57999999999


Q ss_pred             chHHHHHHHHhhC
Q 040601           83 IRSYAVMMAKLLD   95 (97)
Q Consensus        83 ~~~YA~~v~~~LD   95 (97)
                      ....++.+++.|+
T Consensus       213 ~~~~~~~~l~~l~  225 (300)
T PHA02530        213 DGVCEEDTVEWLR  225 (300)
T ss_pred             ChhhHHHHHHHHH
Confidence            9999999998864

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=97.52  E-value=0.00032  Score=52.98  Aligned_cols=54  Identities=20%  Similarity=0.258  Sum_probs=40.9

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      +|+.|+||=|+||+......        ++.               .....+.++||+.++|+.|. +.+.++|.|++
T Consensus         1 ~~k~l~lDrDgtl~~~~~~~--------y~~---------------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq   55 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPTD--------FQV---------------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ   55 (354)
T ss_pred             CCcEEEEeCCCCccCCCCcc--------ccc---------------cCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence            47899999999999985321        110               01124779999999999995 57999999995

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=97.52  E-value=0.00027  Score=47.76  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=45.1

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      +.+-..+|+|+|+||.....                                 ....||+.++|+.|. ..+.++|.|++
T Consensus        22 ~~~v~~vv~D~Dgtl~~~~~---------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~   68 (170)
T TIGR01668        22 KVGIKGVVLDKDNTLVYPDH---------------------------------NEAYPALRDWIEELKAAGRKLLIVSNN   68 (170)
T ss_pred             HCCCCEEEEecCCccccCCC---------------------------------CCcChhHHHHHHHHHHcCCEEEEEeCC
Confidence            34456788999999885421                                 114689999999995 56999999999


Q ss_pred             c-hHHHHHHHHhhC
Q 040601           83 I-RSYAVMMAKLLD   95 (97)
Q Consensus        83 ~-~~YA~~v~~~LD   95 (97)
                      . ...+..+++.++
T Consensus        69 ~~~~~~~~~~~~~g   82 (170)
T TIGR01668        69 AGEQRAKAVEKALG   82 (170)
T ss_pred             chHHHHHHHHHHcC
Confidence            9 688888777654

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=97.47  E-value=0.00017  Score=51.63  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=33.1

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      +...||+.++|+.|. +.+.++|.|++.+..++.+++.
T Consensus       100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~  137 (267)
T PRK13478        100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPL  137 (267)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH
Confidence            567899999999994 6799999999999999988874

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=97.39  E-value=0.00037  Score=45.57  Aligned_cols=53  Identities=21%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHH
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSY   86 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~Y   86 (97)
                      +.+++|+||||......+   ..                         .....|.+.+.|+++ .+.++++++|+-....
T Consensus         2 K~i~~DiDGTL~~~~~~~---y~-------------------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~   53 (126)
T TIGR01689         2 KRLVMDLDNTITLTENGD---YA-------------------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRT   53 (126)
T ss_pred             CEEEEeCCCCcccCCCCc---cc-------------------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence            478999999997542111   00                         123678889999998 6789999999888777


Q ss_pred             HH
Q 040601           87 AV   88 (97)
Q Consensus        87 A~   88 (97)
                      ..
T Consensus        54 ~~   55 (126)
T TIGR01689        54 YE   55 (126)
T ss_pred             hh
Confidence            65

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=97.39  E-value=0.001  Score=44.25  Aligned_cols=37  Identities=16%  Similarity=-0.002  Sum_probs=30.1

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..++|+.  -+++|. +.+.++|.|+..+..+..+++.+.
T Consensus        29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~g   66 (154)
T TIGR01670        29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLG   66 (154)
T ss_pred             EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcC
Confidence            4577776  688884 679999999999999999887653

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>COG4996 Predicted phosphatase [General function prediction only]

Probab=97.38  E-value=0.0011  Score=44.32  Aligned_cols=76  Identities=24%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeee-cceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHH
Q 040601            9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKM-AGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSY   86 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~Y   86 (97)
                      .+|+|+|+||-.....+.+.+.    +       +....-.+ +....-|.++|++++||+++ ...|-+..+|=+-..=
T Consensus         2 ~i~~d~d~t~wdhh~iSsl~pP----f-------~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k   70 (164)
T COG4996           2 AIVFDADKTLWDHHNISSLEPP----F-------RRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK   70 (164)
T ss_pred             cEEEeCCCcccccccchhcCCc----c-------eecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH
Confidence            4799999999865443322221    0       00011111 12345688999999999999 4788899999999999


Q ss_pred             HHHHHHhhC
Q 040601           87 AVMMAKLLD   95 (97)
Q Consensus        87 A~~v~~~LD   95 (97)
                      |-+++..||
T Consensus        71 A~~aLral~   79 (164)
T COG4996          71 AIKALRALD   79 (164)
T ss_pred             HHHHHHHhc
Confidence            999988877

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=97.35  E-value=9e-05  Score=55.19  Aligned_cols=40  Identities=13%  Similarity=0.237  Sum_probs=35.1

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+.++||+.++++.+. ..+.++|.|++...+++.+.+.++
T Consensus       179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lg  219 (322)
T PRK11133        179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLR  219 (322)
T ss_pred             hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcC
Confidence            3668999999999995 679999999999999999888654

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=97.34  E-value=0.00065  Score=46.65  Aligned_cols=61  Identities=21%  Similarity=0.224  Sum_probs=46.9

Q ss_pred             CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEe
Q 040601            2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCT   80 (97)
Q Consensus         2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T   80 (97)
                      |.+++-..+++|||+|||-=.. +.                                .-|.+++-++.+. ..-.++|.+
T Consensus        23 L~~~Gikgvi~DlDNTLv~wd~-~~--------------------------------~tpe~~~W~~e~k~~gi~v~vvS   69 (175)
T COG2179          23 LKAHGIKGVILDLDNTLVPWDN-PD--------------------------------ATPELRAWLAELKEAGIKVVVVS   69 (175)
T ss_pred             HHHcCCcEEEEeccCceecccC-CC--------------------------------CCHHHHHHHHHHHhcCCEEEEEe
Confidence            4567889999999999996532 11                                2366778888884 568899999


Q ss_pred             CCchHHHHHHHHhhC
Q 040601           81 TGIRSYAVMMAKLLD   95 (97)
Q Consensus        81 ~~~~~YA~~v~~~LD   95 (97)
                      |+++.-+..+++.||
T Consensus        70 Nn~e~RV~~~~~~l~   84 (175)
T COG2179          70 NNKESRVARAAEKLG   84 (175)
T ss_pred             CCCHHHHHhhhhhcC
Confidence            999888888887776

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=97.34  E-value=0.00048  Score=48.71  Aligned_cols=54  Identities=17%  Similarity=0.114  Sum_probs=37.4

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      +-..+++|+||||.+...                                   ..||+.++|+++. +.+.++|.||+.+
T Consensus         7 ~~~~~~~D~dG~l~~~~~-----------------------------------~~pga~e~L~~L~~~G~~~~ivTN~~~   51 (242)
T TIGR01459         7 DYDVFLLDLWGVIIDGNH-----------------------------------TYPGAVQNLNKIIAQGKPVYFVSNSPR   51 (242)
T ss_pred             cCCEEEEecccccccCCc-----------------------------------cCccHHHHHHHHHHCCCEEEEEeCCCC
Confidence            345688999999986532                                   3577778888874 5677788887777


Q ss_pred             HHHH--HHHHhh
Q 040601           85 SYAV--MMAKLL   94 (97)
Q Consensus        85 ~YA~--~v~~~L   94 (97)
                      ..++  +.++.+
T Consensus        52 ~~~~~~~~L~~~   63 (242)
T TIGR01459        52 NIFSLHKTLKSL   63 (242)
T ss_pred             ChHHHHHHHHHC
Confidence            6655  445544

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=97.32  E-value=0.00061  Score=48.91  Aligned_cols=55  Identities=27%  Similarity=0.242  Sum_probs=36.7

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      .+.+++||||||+.+...                                  ..|...+.|+.+. +...++|.|.-...
T Consensus         4 ~kli~~DlDGTLl~~~~~----------------------------------~~~~~~~ai~~l~~~Gi~~~iaTgR~~~   49 (273)
T PRK00192          4 KLLVFTDLDGTLLDHHTY----------------------------------SYEPAKPALKALKEKGIPVIPCTSKTAA   49 (273)
T ss_pred             ceEEEEcCcccCcCCCCc----------------------------------CcHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence            468999999999975321                                  1244556666664 45677777777777


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      .+..+++.++
T Consensus        50 ~~~~~~~~l~   59 (273)
T PRK00192         50 EVEVLRKELG   59 (273)
T ss_pred             HHHHHHHHcC
Confidence            7777666554

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=97.25  E-value=0.0007  Score=46.38  Aligned_cols=51  Identities=29%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHH
Q 040601           10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAV   88 (97)
Q Consensus        10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~   88 (97)
                      +++||||||+++...  ++                                |...+.|+++ ++...+++.|.-....+.
T Consensus         1 i~~DlDGTLl~~~~~--i~--------------------------------~~~~~al~~l~~~g~~~~i~TGR~~~~~~   46 (254)
T PF08282_consen    1 IFSDLDGTLLNSDGK--IS--------------------------------PETIEALKELQEKGIKLVIATGRSYSSIK   46 (254)
T ss_dssp             EEEECCTTTCSTTSS--SC--------------------------------HHHHHHHHHHHHTTCEEEEECSSTHHHHH
T ss_pred             cEEEECCceecCCCe--eC--------------------------------HHHHHHHHhhcccceEEEEEccCcccccc
Confidence            689999999996432  22                                3445566666 367777777777777777


Q ss_pred             HHHHhh
Q 040601           89 MMAKLL   94 (97)
Q Consensus        89 ~v~~~L   94 (97)
                      .++..+
T Consensus        47 ~~~~~~   52 (254)
T PF08282_consen   47 RLLKEL   52 (254)
T ss_dssp             HHHHHT
T ss_pred             cccccc
Confidence            776643

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=97.23  E-value=0.0014  Score=47.08  Aligned_cols=22  Identities=41%  Similarity=0.460  Sum_probs=18.0

Q ss_pred             CCcCCCCceEEEeCCCeeeeee
Q 040601            1 MVYRQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         1 ~ll~~~k~~LVLDLDeTLvhs~   22 (97)
                      ||--+.++.+++||||||+++.
T Consensus         1 ~~~~~~~~lI~~DlDGTLL~~~   22 (271)
T PRK03669          1 MLSLQDPLLIFTDLDGTLLDSH   22 (271)
T ss_pred             CCCcCCCeEEEEeCccCCcCCC
Confidence            5555678889999999999864

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=97.15  E-value=0.0014  Score=46.60  Aligned_cols=18  Identities=39%  Similarity=0.388  Sum_probs=15.2

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      ..+.+++||||||+.+..
T Consensus         2 ~~kli~~DlDGTLl~~~~   19 (264)
T COG0561           2 MIKLLAFDLDGTLLDSNK   19 (264)
T ss_pred             CeeEEEEcCCCCccCCCC
Confidence            357899999999998865

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=97.07  E-value=0.0016  Score=44.96  Aligned_cols=13  Identities=46%  Similarity=0.560  Sum_probs=11.4

Q ss_pred             EEEeCCCeeeeee
Q 040601           10 LVLDLDHTLLHAV   22 (97)
Q Consensus        10 LVLDLDeTLvhs~   22 (97)
                      +++||||||+.+.
T Consensus         2 i~~DlDGTLL~~~   14 (221)
T TIGR02463         2 VFSDLDGTLLDSH   14 (221)
T ss_pred             EEEeCCCCCcCCC
Confidence            7899999999764

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=97.02  E-value=0.0023  Score=44.22  Aligned_cols=14  Identities=29%  Similarity=0.415  Sum_probs=11.8

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.+++||||||+..
T Consensus         2 k~v~~DlDGTLl~~   15 (215)
T TIGR01487         2 KLVAIDIDGTLTEP   15 (215)
T ss_pred             cEEEEecCCCcCCC
Confidence            46899999999964

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=97.00  E-value=0.0023  Score=45.23  Aligned_cols=13  Identities=46%  Similarity=0.672  Sum_probs=11.3

Q ss_pred             EEEeCCCeeeeee
Q 040601           10 LVLDLDHTLLHAV   22 (97)
Q Consensus        10 LVLDLDeTLvhs~   22 (97)
                      +++||||||+...
T Consensus         2 i~~DlDGTLl~~~   14 (256)
T TIGR00099         2 IFIDLDGTLLNDD   14 (256)
T ss_pred             EEEeCCCCCCCCC
Confidence            7899999999863

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>PRK10444 UMP phosphatase; Provisional

Probab=96.99  E-value=0.0018  Score=46.38  Aligned_cols=14  Identities=29%  Similarity=0.612  Sum_probs=12.3

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      .+++|+||||+++.
T Consensus         3 ~v~~DlDGtL~~~~   16 (248)
T PRK10444          3 NVICDIDGVLMHDN   16 (248)
T ss_pred             EEEEeCCCceEeCC
Confidence            67899999999874

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=96.91  E-value=0.0028  Score=44.66  Aligned_cols=12  Identities=50%  Similarity=0.648  Sum_probs=10.9

Q ss_pred             EEEeCCCeeeee
Q 040601           10 LVLDLDHTLLHA   21 (97)
Q Consensus        10 LVLDLDeTLvhs   21 (97)
                      +++||||||++.
T Consensus         2 i~~DlDGTLl~~   13 (225)
T TIGR02461         2 IFTDLDGTLLPP   13 (225)
T ss_pred             EEEeCCCCCcCC
Confidence            689999999994

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=96.90  E-value=0.0032  Score=44.72  Aligned_cols=16  Identities=31%  Similarity=0.343  Sum_probs=13.5

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+++.
T Consensus         3 ~kli~~DlDGTLl~~~   18 (270)
T PRK10513          3 IKLIAIDMDGTLLLPD   18 (270)
T ss_pred             eEEEEEecCCcCcCCC
Confidence            4678999999999864

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=96.85  E-value=0.005  Score=43.55  Aligned_cols=16  Identities=44%  Similarity=0.447  Sum_probs=13.5

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         3 ~kli~~DlDGTLl~~~   18 (272)
T PRK10530          3 YRVIALDLDGTLLTPK   18 (272)
T ss_pred             ccEEEEeCCCceECCC
Confidence            4688999999999764

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=96.80  E-value=0.0042  Score=45.95  Aligned_cols=51  Identities=18%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh-----cceEEEEeCC
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK-----MYEIYLCTTG   82 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~-----~~ei~i~T~~   82 (97)
                      +.+++|+||||+++..                                   .-||+.++++.+..     ...+.+.||+
T Consensus         1 ~~~ifD~DGvL~~g~~-----------------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn   45 (321)
T TIGR01456         1 FGFAFDIDGVLFRGKK-----------------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNG   45 (321)
T ss_pred             CEEEEeCcCceECCcc-----------------------------------ccHHHHHHHHHHhccccccCCCEEEEecC
Confidence            4689999999998742                                   24677888888854     7778888877


Q ss_pred             c----hHHHHHHHHh
Q 040601           83 I----RSYAVMMAKL   93 (97)
Q Consensus        83 ~----~~YA~~v~~~   93 (97)
                      .    +.+|+.+.+.
T Consensus        46 ~g~s~~~~~~~l~~~   60 (321)
T TIGR01456        46 GGFSERARAEEISSL   60 (321)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            5    5566665443

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PRK06769 hypothetical protein; Validated

Probab=96.72  E-value=0.0045  Score=41.86  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=24.0

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      +...||+.++|++|. +.+.++|.|++..
T Consensus        27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~   55 (173)
T PRK06769         27 FTLFPFTKASLQKLKANHIKIFSFTNQPG   55 (173)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence            347899999999994 6799999999874

>smart00775 LNS2 LNS2 domain

Probab=96.71  E-value=0.0044  Score=41.57  Aligned_cols=55  Identities=18%  Similarity=0.244  Sum_probs=31.3

Q ss_pred             EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchHHH
Q 040601           10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYA   87 (97)
Q Consensus        10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA   87 (97)
                      +++|+||||+.+.....+..-    +                +..   +..|++.++++++. +.+.+++.|+.....+
T Consensus         2 VisDIDGTL~~sd~~~~~~~~----~----------------~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~   57 (157)
T smart00775        2 VISDIDGTITKSDVLGHVVPI----I----------------GKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQA   57 (157)
T ss_pred             EEEecCCCCcccccccccccc----c----------------ccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHH
Confidence            789999999987522110000    0                000   23577777777773 4566666666655544

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>PLN02645 phosphoglycolate phosphatase

Probab=96.70  E-value=0.0038  Score=45.96  Aligned_cols=50  Identities=12%  Similarity=0.054  Sum_probs=34.1

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~   85 (97)
                      -..+++|+||||.+...                                   .=||+.++|+.+ .+...+++.||++..
T Consensus        28 ~~~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~   72 (311)
T PLN02645         28 VETFIFDCDGVIWKGDK-----------------------------------LIEGVPETLDMLRSMGKKLVFVTNNSTK   72 (311)
T ss_pred             CCEEEEeCcCCeEeCCc-----------------------------------cCcCHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            35789999999987632                                   126777888887 457778888877644


Q ss_pred             HHHHHH
Q 040601           86 YAVMMA   91 (97)
Q Consensus        86 YA~~v~   91 (97)
                      -...++
T Consensus        73 ~~~~~~   78 (311)
T PLN02645         73 SRAQYG   78 (311)
T ss_pred             CHHHHH
Confidence            333333

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=96.68  E-value=0.0065  Score=42.01  Aligned_cols=15  Identities=20%  Similarity=0.328  Sum_probs=12.8

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         4 kli~~DlDGTLl~~~   18 (230)
T PRK01158          4 KAIAIDIDGTITDKD   18 (230)
T ss_pred             eEEEEecCCCcCCCC
Confidence            678999999999754

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=96.66  E-value=0.0052  Score=44.06  Aligned_cols=47  Identities=13%  Similarity=0.107  Sum_probs=32.8

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      +.+++|+||||.+.....    +                           ..-||..++++++. +...+++.|+.+..
T Consensus         2 k~i~~D~DGtl~~~~~~~----~---------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~   49 (257)
T TIGR01458         2 KGVLLDISGVLYISDAKS----G---------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE   49 (257)
T ss_pred             CEEEEeCCCeEEeCCCcc----c---------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence            368999999999874310    0                           02467888888884 56888888875544

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=96.66  E-value=0.0029  Score=43.93  Aligned_cols=39  Identities=13%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+.++||+.+||+.+. +.+.++|.|++.+.|++++++.+
T Consensus        72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~  111 (219)
T PRK09552         72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL  111 (219)
T ss_pred             CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence            3679999999999995 67999999999999999999864

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.0045  Score=45.29  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=40.4

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      .+..+..+||||||++...                                   .=||+.+||+.+. +.-.+++-||++
T Consensus         6 ~~y~~~l~DlDGvl~~G~~-----------------------------------~ipga~e~l~~L~~~g~~~iflTNn~   50 (269)
T COG0647           6 DKYDGFLFDLDGVLYRGNE-----------------------------------AIPGAAEALKRLKAAGKPVIFLTNNS   50 (269)
T ss_pred             hhcCEEEEcCcCceEeCCc-----------------------------------cCchHHHHHHHHHHcCCeEEEEeCCC
Confidence            3456789999999997743                                   2388899999994 568889999988


Q ss_pred             hHHHHHHHHhh
Q 040601           84 RSYAVMMAKLL   94 (97)
Q Consensus        84 ~~YA~~v~~~L   94 (97)
                      ..-++.+.+.|
T Consensus        51 ~~s~~~~~~~L   61 (269)
T COG0647          51 TRSREVVAARL   61 (269)
T ss_pred             CCCHHHHHHHH
Confidence            66555444433

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=96.61  E-value=0.0067  Score=41.32  Aligned_cols=12  Identities=58%  Similarity=0.814  Sum_probs=10.8

Q ss_pred             EEEeCCCeeeee
Q 040601           10 LVLDLDHTLLHA   21 (97)
Q Consensus        10 LVLDLDeTLvhs   21 (97)
                      +++|+||||+..
T Consensus         2 i~~D~DgTL~~~   13 (204)
T TIGR01484         2 LFFDLDGTLLDP   13 (204)
T ss_pred             EEEeCcCCCcCC
Confidence            789999999975

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PRK10976 putative hydrolase; Provisional

Probab=96.60  E-value=0.007  Score=42.91  Aligned_cols=15  Identities=40%  Similarity=0.355  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         3 kli~~DlDGTLl~~~   17 (266)
T PRK10976          3 QVVASDLDGTLLSPD   17 (266)
T ss_pred             eEEEEeCCCCCcCCC
Confidence            578999999999874

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=96.56  E-value=0.008  Score=42.89  Aligned_cols=15  Identities=33%  Similarity=0.317  Sum_probs=12.9

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         3 kli~~DlDGTLl~~~   17 (272)
T PRK15126          3 RLAAFDMDGTLLMPD   17 (272)
T ss_pred             cEEEEeCCCcCcCCC
Confidence            578999999999764

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=96.47  E-value=0.0052  Score=42.62  Aligned_cols=40  Identities=13%  Similarity=0.221  Sum_probs=36.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+.+|||+.+||+.+. ....++|.|++.+.|++++++.+.
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~  108 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV  108 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence            4789999999999995 579999999999999999998864

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=96.47  E-value=0.008  Score=42.64  Aligned_cols=14  Identities=43%  Similarity=0.546  Sum_probs=12.0

Q ss_pred             EEEeCCCeeeeeec
Q 040601           10 LVLDLDHTLLHAVD   23 (97)
Q Consensus        10 LVLDLDeTLvhs~~   23 (97)
                      +++||||||+++..
T Consensus         2 i~~DlDGTll~~~~   15 (256)
T TIGR01486         2 IFTDLDGTLLDPHG   15 (256)
T ss_pred             EEEcCCCCCcCCCC
Confidence            78999999998754

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>TIGR01675 plant-AP plant acid phosphatase

Probab=96.46  E-value=0.022  Score=40.76  Aligned_cols=83  Identities=16%  Similarity=0.039  Sum_probs=47.2

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      ..+|..+|||+|||++....-.   ..  ..+..  ... +...|.-=-..--...-|++.+|++.+ +..++|++.|.=
T Consensus        74 ~dg~~A~V~DIDET~LsN~py~---~~--~~~g~--~~~-~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR  145 (229)
T TIGR01675        74 GDGMDAWIFDVDDTLLSNIPYY---KK--HGYGT--EKT-DPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGR  145 (229)
T ss_pred             CCCCcEEEEccccccccCHHHH---HH--hccCC--CcC-CHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4589999999999999875311   00  00000  000 000000000000124678999999998 678999999988


Q ss_pred             chHHHHHHHHhh
Q 040601           83 IRSYAVMMAKLL   94 (97)
Q Consensus        83 ~~~YA~~v~~~L   94 (97)
                      .....+...+.|
T Consensus       146 ~e~~r~~T~~nL  157 (229)
T TIGR01675       146 WEELRNATLDNL  157 (229)
T ss_pred             ChHHHHHHHHHH
Confidence            776655554443

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=96.45  E-value=0.0068  Score=41.69  Aligned_cols=13  Identities=31%  Similarity=0.394  Sum_probs=11.2

Q ss_pred             EEEeCCCeeeeee
Q 040601           10 LVLDLDHTLLHAV   22 (97)
Q Consensus        10 LVLDLDeTLvhs~   22 (97)
                      +++||||||+.+.
T Consensus         1 i~~DlDGTLl~~~   13 (225)
T TIGR01482         1 IASDIDGTLTDPN   13 (225)
T ss_pred             CeEeccCccCCCC
Confidence            5799999999864

catalyze the same reaction as SPP.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=96.43  E-value=0.0084  Score=43.29  Aligned_cols=41  Identities=15%  Similarity=0.139  Sum_probs=28.5

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      ..+++|+||||++...                                   .-||+.++|+++. +...+++.|+++
T Consensus         3 ~~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns   44 (279)
T TIGR01452         3 QGFIFDCDGVLWLGER-----------------------------------VVPGAPELLDRLARAGKAALFVTNNS   44 (279)
T ss_pred             cEEEEeCCCceEcCCe-----------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence            4688999999977532                                   2356777777774 456777777643

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=96.37  E-value=0.0085  Score=43.27  Aligned_cols=18  Identities=28%  Similarity=0.255  Sum_probs=14.7

Q ss_pred             CceEEEeCCCeeeeeecc
Q 040601            7 KLHLVLDLDHTLLHAVDI   24 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~   24 (97)
                      +..+++|+||||+.....
T Consensus        14 ~~li~~D~DGTLl~~~~~   31 (266)
T PRK10187         14 NYAWFFDLDGTLAEIKPH   31 (266)
T ss_pred             CEEEEEecCCCCCCCCCC
Confidence            578999999999986443

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=96.36  E-value=0.0081  Score=43.08  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=33.4

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ++.-|-+|+||-++.+.+ .++||||.+..|..++..|-
T Consensus        99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LG  136 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLG  136 (244)
T ss_pred             cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhC
Confidence            677778999999997766 99999999999999998873

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=96.34  E-value=0.013  Score=40.17  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=16.9

Q ss_pred             CcCCCCceEEEeCCCeeeeee
Q 040601            2 VYRQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         2 ll~~~k~~LVLDLDeTLvhs~   22 (97)
                      |.+.+=..+|+|+|+||+.-.
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~   56 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPY   56 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCC
Confidence            556677899999999997553

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=96.31  E-value=0.01  Score=42.31  Aligned_cols=15  Identities=27%  Similarity=0.397  Sum_probs=12.5

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++|+||||....
T Consensus         2 ~~~~~D~DGtl~~~~   16 (249)
T TIGR01457         2 KGYLIDLDGTMYKGK   16 (249)
T ss_pred             CEEEEeCCCceEcCC
Confidence            368999999999764

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=96.30  E-value=0.022  Score=38.85  Aligned_cols=23  Identities=13%  Similarity=-0.057  Sum_probs=18.3

Q ss_pred             hcceEEEEeCCchHHHHHHHHhh
Q 040601           72 KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        72 ~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +.++++|.|+.....+.++++.+
T Consensus        63 ~Gi~v~I~T~~~~~~v~~~l~~l   85 (183)
T PRK09484         63 SGIEVAIITGRKSKLVEDRMTTL   85 (183)
T ss_pred             CCCEEEEEeCCCcHHHHHHHHHc
Confidence            67888888888888888887765

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=96.28  E-value=0.0068  Score=44.54  Aligned_cols=39  Identities=13%  Similarity=0.216  Sum_probs=35.5

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      -+.+|||+.+|++.| .....++|+|+|...+++.+++.+
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l  158 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA  158 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence            578999999999999 567999999999999999999853

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=96.28  E-value=0.016  Score=37.44  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=37.0

Q ss_pred             EEEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           55 FLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        55 ~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ......||+.++|+.++ +.+.+++.|++.+.+++.+++.+.
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~  115 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLG  115 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTT
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccc
Confidence            46789999999999997 899999999999999999988653

...

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=96.15  E-value=0.01  Score=40.40  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.++|+.+. +.+.++|.|++.+.+++.+++.++
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~  123 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLG  123 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence            4678999999999995 679999999999999999998754

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>PTZ00174 phosphomannomutase; Provisional

Probab=96.10  E-value=0.021  Score=40.53  Aligned_cols=18  Identities=39%  Similarity=0.497  Sum_probs=14.8

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      ..+.+++||||||+++..
T Consensus         4 ~~klia~DlDGTLL~~~~   21 (247)
T PTZ00174          4 KKTILLFDVDGTLTKPRN   21 (247)
T ss_pred             CCeEEEEECcCCCcCCCC
Confidence            356789999999998753

>PLN02423 phosphomannomutase

Probab=96.08  E-value=0.02  Score=40.81  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=15.5

Q ss_pred             cCCCCceEEEeCCCeeeeeec
Q 040601            3 YRQKKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~   23 (97)
                      -++.|..+++||||||+.+..
T Consensus         3 ~~~~~~i~~~D~DGTLl~~~~   23 (245)
T PLN02423          3 ARKPGVIALFDVDGTLTAPRK   23 (245)
T ss_pred             CCccceEEEEeccCCCcCCCC
Confidence            345556667999999997753

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=96.07  E-value=0.013  Score=39.43  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=35.2

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. +.+.++|.|++...+++.+++.+.
T Consensus        79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g  118 (201)
T TIGR01491        79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLN  118 (201)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhC
Confidence            568999999999994 689999999999999999998763

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=96.06  E-value=0.011  Score=40.24  Aligned_cols=40  Identities=13%  Similarity=0.192  Sum_probs=35.2

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.++|+.+.+.+.++|.|++.+.+++.+++.++
T Consensus        66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~g  105 (205)
T PRK13582         66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLG  105 (205)
T ss_pred             hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcC
Confidence            4567899999999996559999999999999999988764

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=96.04  E-value=0.012  Score=38.91  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=35.2

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.++++.+ +..+.++|.|++.+.|++++++.+.
T Consensus        71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g  111 (177)
T TIGR01488        71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLG  111 (177)
T ss_pred             cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence            355799999999999 5679999999999999999998753

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=96.01  E-value=0.012  Score=41.03  Aligned_cols=39  Identities=8%  Similarity=0.147  Sum_probs=35.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +.++||+.+|++.+.+...++|-|++...+++++++.+.
T Consensus        67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lg  105 (203)
T TIGR02137        67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLG  105 (203)
T ss_pred             CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcC
Confidence            468999999999997778999999999999999998865

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=96.00  E-value=0.012  Score=40.37  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=35.0

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ++.++||+.++|+.+. +.+.++|.|++.+.++...++.++
T Consensus        92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~  132 (221)
T TIGR02253        92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLG  132 (221)
T ss_pred             hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCC
Confidence            4678999999999996 469999999999999998887664

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=95.88  E-value=0.013  Score=41.46  Aligned_cols=48  Identities=19%  Similarity=0.211  Sum_probs=30.7

Q ss_pred             EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc----h
Q 040601           10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI----R   84 (97)
Q Consensus        10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~----~   84 (97)
                      +++|+||||+.+..                                   .-|++.++++.+. +.+.+.+.||+.    .
T Consensus         1 ~lfD~DGvL~~~~~-----------------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~   45 (236)
T TIGR01460         1 FLFDIDGVLWLGHK-----------------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEE   45 (236)
T ss_pred             CEEeCcCccCcCCc-----------------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence            47999999998743                                   1246667777773 456777776544    4


Q ss_pred             HHHHHHHH
Q 040601           85 SYAVMMAK   92 (97)
Q Consensus        85 ~YA~~v~~   92 (97)
                      ++++.+.+
T Consensus        46 ~~~~~l~~   53 (236)
T TIGR01460        46 DYAEKLSS   53 (236)
T ss_pred             HHHHHHHH
Confidence            44444444

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR00685 T6PP trehalose-phosphatase

Probab=95.87  E-value=0.0088  Score=42.39  Aligned_cols=21  Identities=29%  Similarity=0.271  Sum_probs=16.3

Q ss_pred             CCCceEEEeCCCeeeeeeccC
Q 040601            5 QKKLHLVLDLDHTLLHAVDID   25 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~   25 (97)
                      .+|..|+||+||||+-....|
T Consensus         1 ~~~~~l~lD~DGTL~~~~~~p   21 (244)
T TIGR00685         1 ARKRAFFFDYDGTLSEIVPDP   21 (244)
T ss_pred             CCcEEEEEecCccccCCcCCC
Confidence            367889999999999754433

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=95.80  E-value=0.032  Score=41.49  Aligned_cols=16  Identities=25%  Similarity=0.158  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      +.+++||||||+.+..
T Consensus         2 KLIftDLDGTLLd~~~   17 (302)
T PRK12702          2 RLVLSSLDGSLLDLEF   17 (302)
T ss_pred             cEEEEeCCCCCcCCCC
Confidence            5789999999997543

>PLN02887 hydrolase family protein

Probab=95.79  E-value=0.03  Score=44.99  Aligned_cols=19  Identities=32%  Similarity=0.377  Sum_probs=15.3

Q ss_pred             CCCCceEEEeCCCeeeeee
Q 040601            4 RQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+.+++||||||+.+.
T Consensus       305 ~~~iKLIa~DLDGTLLn~d  323 (580)
T PLN02887        305 KPKFSYIFCDMDGTLLNSK  323 (580)
T ss_pred             ccCccEEEEeCCCCCCCCC
Confidence            3456789999999999874

>PLN02954 phosphoserine phosphatase

Probab=95.69  E-value=0.023  Score=39.17  Aligned_cols=39  Identities=26%  Similarity=0.477  Sum_probs=34.7

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..++||+.++|+.+ .+.+.++|.|++.+.+++.+++.+.
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~g  122 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILG  122 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhC
Confidence            45789999999999 5678999999999999999998763

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=95.63  E-value=0.026  Score=38.71  Aligned_cols=40  Identities=28%  Similarity=0.242  Sum_probs=35.3

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+.+. +.+.++|.|++.+.+++.+++.++
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~g  120 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTG  120 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence            4678899999999995 579999999999999999988753

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=95.57  E-value=0.037  Score=38.33  Aligned_cols=53  Identities=19%  Similarity=0.130  Sum_probs=38.5

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      +..+.|+||.||||+--... .+... +                       -..+.||+.+-|..+ ...|.++|+||.
T Consensus         3 ~~~k~lflDRDGtin~d~~~-yv~~~-~-----------------------~~~~~~g~i~al~~l~~~gy~lVvvTNQ   56 (181)
T COG0241           3 KDQKALFLDRDGTINIDKGD-YVDSL-D-----------------------DFQFIPGVIPALLKLQRAGYKLVVVTNQ   56 (181)
T ss_pred             CCCcEEEEcCCCceecCCCc-ccCcH-H-----------------------HhccCccHHHHHHHHHhCCCeEEEEECC
Confidence            34789999999999865431 11221 0                       123789999999999 578999999994

>PRK09449 dUMP phosphatase; Provisional

Probab=95.56  E-value=0.025  Score=38.97  Aligned_cols=38  Identities=11%  Similarity=0.056  Sum_probs=34.4

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.|.+.+.++|.||+.+.+++.+++.+
T Consensus        94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~  131 (224)
T PRK09449         94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERT  131 (224)
T ss_pred             CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhC
Confidence            56899999999999888999999999999999987764

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=95.54  E-value=0.021  Score=43.16  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=38.4

Q ss_pred             eEEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh-C
Q 040601           53 ELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL-D   95 (97)
Q Consensus        53 ~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L-D   95 (97)
                      ..-|+.+-||+.++|+++ +....+.|-||+...|++.+++.+ +
T Consensus       179 p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g  223 (343)
T TIGR02244       179 PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG  223 (343)
T ss_pred             HHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence            345888999999999999 467999999999999999999986 5

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=95.53  E-value=0.025  Score=40.76  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=35.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.++|+.+. ..+.++|.|++.+.+++.+++.++
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g  147 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVG  147 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcC
Confidence            3567999999999995 679999999999999999988653

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=95.50  E-value=0.025  Score=40.16  Aligned_cols=40  Identities=23%  Similarity=0.091  Sum_probs=35.8

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+.| ++.+.++|.|++.+.+++.+++.++
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~g  146 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLG  146 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcC
Confidence            467889999999999 5789999999999999999998764

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=95.49  E-value=0.028  Score=38.34  Aligned_cols=40  Identities=18%  Similarity=0.099  Sum_probs=35.4

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+++. +.+.++|.|++.+.+++.+++.++
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~  113 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALG  113 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcC
Confidence            4678999999999994 689999999999999999888754

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=95.44  E-value=0.038  Score=40.29  Aligned_cols=71  Identities=21%  Similarity=0.209  Sum_probs=36.7

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhc-ceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKM-YEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~-~ei~i~T~~   82 (97)
                      +.+++.+|+|||||++..+.-.   .    +.......++ +..+.-=-..---+.=||+.|||+.+.++ -.|.--|+-
T Consensus        76 k~K~~aVvlDlDETvLdNs~Yq---g----y~v~nnk~f~-pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR  147 (274)
T COG2503          76 KGKKKAVVLDLDETVLDNSAYQ---G----YQVLNNKGFT-PETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNR  147 (274)
T ss_pred             cCCCceEEEecchHhhcCcccc---c----hhhhcCCCCC-ccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEecc
Confidence            4577899999999999886432   1    1111000000 00000000001234569999999999544 444443443

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=95.42  E-value=0.05  Score=44.56  Aligned_cols=19  Identities=42%  Similarity=0.413  Sum_probs=15.7

Q ss_pred             CCCceEEEeCCCeeeeeec
Q 040601            5 QKKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~   23 (97)
                      ++++.++.||||||++...
T Consensus       414 ~~~KLIfsDLDGTLLd~d~  432 (694)
T PRK14502        414 QFKKIVYTDLDGTLLNPLT  432 (694)
T ss_pred             ceeeEEEEECcCCCcCCCC
Confidence            4678899999999998743

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=95.40  E-value=0.03  Score=38.46  Aligned_cols=39  Identities=18%  Similarity=0.019  Sum_probs=35.3

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+.||+.++|+.+ ++.+.++|.|++.+.+++.+++.++
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~  125 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLG  125 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhh
Confidence            57999999999999 5789999999999999999998664

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=95.32  E-value=0.036  Score=37.53  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...+||+.++++.+ ++.+.++|.|++...+++++++.+.
T Consensus        86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg  125 (202)
T TIGR01490        86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILG  125 (202)
T ss_pred             HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC
Confidence            45899999999999 4679999999999999999998764

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=95.21  E-value=0.035  Score=37.56  Aligned_cols=38  Identities=13%  Similarity=0.176  Sum_probs=33.7

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+.+ .+.++|.|++...+++.+++.+
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~  129 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA  129 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC
Confidence            4678999999999976 5999999999999999988764

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=95.20  E-value=0.039  Score=37.81  Aligned_cols=40  Identities=15%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....+||+.++|+.+. +.+.++|.|++...+++.+++.++
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~  131 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALG  131 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence            3678999999999996 579999999999999999988754

>PTZ00445 p36-lilke protein; Provisional

Probab=95.18  E-value=0.018  Score=41.01  Aligned_cols=65  Identities=12%  Similarity=0.012  Sum_probs=43.5

Q ss_pred             cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeC
Q 040601            3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTT   81 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~   81 (97)
                      .+.+=+.+++|+|.|||-.-..    ++...  .+             ....+.-..+|.+.++++.+. ..+.|+|-|-
T Consensus        39 ~~~GIk~Va~D~DnTlI~~Hsg----G~~~~--~~-------------~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf   99 (219)
T PTZ00445         39 NECGIKVIASDFDLTMITKHSG----GYIDP--DN-------------DDIRVLTSVTPDFKILGKRLKNSNIKISVVTF   99 (219)
T ss_pred             HHcCCeEEEecchhhhhhhhcc----cccCC--Cc-------------chhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence            3456678999999999853211    11000  00             012234568999999999995 6899999999


Q ss_pred             CchHH
Q 040601           82 GIRSY   86 (97)
Q Consensus        82 ~~~~Y   86 (97)
                      +.+.-
T Consensus       100 Sd~~~  104 (219)
T PTZ00445        100 SDKEL  104 (219)
T ss_pred             cchhh
Confidence            98754

>PLN03017 trehalose-phosphatase

Probab=95.14  E-value=0.052  Score=41.41  Aligned_cols=17  Identities=41%  Similarity=0.522  Sum_probs=15.0

Q ss_pred             cCCCCceEEEeCCCeee
Q 040601            3 YRQKKLHLVLDLDHTLL   19 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLv   19 (97)
                      .+.++..|+||+||||+
T Consensus       107 ~~~k~~llflD~DGTL~  123 (366)
T PLN03017        107 SRGKQIVMFLDYDGTLS  123 (366)
T ss_pred             hcCCCeEEEEecCCcCc
Confidence            45678999999999999

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=95.13  E-value=0.048  Score=37.21  Aligned_cols=39  Identities=15%  Similarity=0.268  Sum_probs=34.7

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+..+||+.++|+++.+.+.++|-|++.+.+++.+++.+
T Consensus        95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~  133 (224)
T TIGR02254        95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKS  133 (224)
T ss_pred             cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHC
Confidence            367899999999999766999999999999999988764

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=95.05  E-value=0.036  Score=42.80  Aligned_cols=40  Identities=18%  Similarity=0.380  Sum_probs=35.6

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+.++||+.++|+.+ ++.+.++|.|++.+.+++.+++.++
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~  368 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYD  368 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCC
Confidence            357789999999999 5679999999999999999998764

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=95.04  E-value=0.055  Score=38.23  Aligned_cols=14  Identities=57%  Similarity=0.795  Sum_probs=12.2

Q ss_pred             CceEEEeCCCeeee
Q 040601            7 KLHLVLDLDHTLLH   20 (97)
Q Consensus         7 k~~LVLDLDeTLvh   20 (97)
                      ++.++.||||||+.
T Consensus         1 ~~li~tDlDGTLl~   14 (249)
T TIGR01485         1 RLLLVSDLDNTLVD   14 (249)
T ss_pred             CeEEEEcCCCcCcC
Confidence            46789999999996

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PRK11590 hypothetical protein; Provisional

Probab=94.97  E-value=0.046  Score=37.84  Aligned_cols=38  Identities=13%  Similarity=0.030  Sum_probs=33.1

Q ss_pred             EEecchHHHHH-HHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFL-KEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL-~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +..+||+.+.| +.+. +.+.++|.|++.+.|+++++..+
T Consensus        94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l  133 (211)
T PRK11590         94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT  133 (211)
T ss_pred             CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc
Confidence            45699999999 5675 68999999999999999998764

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=94.93  E-value=0.021  Score=40.53  Aligned_cols=72  Identities=21%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhh-hCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMK-LGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      .++..+|||+|||++.++...   ..  ..... ... ...-..+...+..   ..=||+.+|++.+ +..++|++-|+=
T Consensus        70 ~~~~avv~DIDeTvLsn~~y~---~~--~~~~~~~~~-~~~w~~wv~~~~~---~aip~a~~l~~~~~~~G~~V~~iT~R  140 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNSPYY---AY--LIFGGESFS-PEDWDEWVASGKA---PAIPGALELYNYARSRGVKVFFITGR  140 (229)
T ss_dssp             TSEEEEEEESBTTTEEHHHHH---HH--HHHHTHHH--CCHHHHHHHCTGG---EEETTHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCcEEEEECCcccccCHHHH---HH--HhhccCCCC-hHHHHHHHhcccC---cccHHHHHHHHHHHHCCCeEEEEecC
Confidence            578999999999999553310   00  00000 000 0000000000111   3558899999999 577999988875


Q ss_pred             chH
Q 040601           83 IRS   85 (97)
Q Consensus        83 ~~~   85 (97)
                      ...
T Consensus       141 ~~~  143 (229)
T PF03767_consen  141 PES  143 (229)
T ss_dssp             ETT
T ss_pred             Cch
Confidence            554

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>PLN02151 trehalose-phosphatase

Probab=94.92  E-value=0.064  Score=40.74  Aligned_cols=59  Identities=19%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      +.++..|+||+||||+--...|.                             -+..-|.+.+-|+.|++.+.++|-|--.
T Consensus        95 ~~~~~ll~lDyDGTL~PIv~~P~-----------------------------~A~~~~~~~~aL~~La~~~~vaIvSGR~  145 (354)
T PLN02151         95 EGKQIVMFLDYDGTLSPIVDDPD-----------------------------RAFMSKKMRNTVRKLAKCFPTAIVSGRC  145 (354)
T ss_pred             cCCceEEEEecCccCCCCCCCcc-----------------------------cccCCHHHHHHHHHHhcCCCEEEEECCC
Confidence            45789999999999994332221                             1224466666666666666666666555


Q ss_pred             hHHHHHHH
Q 040601           84 RSYAVMMA   91 (97)
Q Consensus        84 ~~YA~~v~   91 (97)
                      ..-++.++
T Consensus       146 ~~~l~~~~  153 (354)
T PLN02151        146 REKVSSFV  153 (354)
T ss_pred             HHHHHHHc
Confidence            55444443

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=94.91  E-value=0.049  Score=36.09  Aligned_cols=39  Identities=8%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +.++||+.++|+.+. ..+.++|.|++...+++.+++.++
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~  110 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIG  110 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcC
Confidence            689999999999995 579999999999999999988753

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=94.84  E-value=0.054  Score=35.68  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHH
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAK   92 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~   92 (97)
                      +...||+.++|+.+. ..+.++|.|++...+ ..+..
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~  119 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQ  119 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHH
Confidence            678999999999995 579999999999988 55554

HAD subfamilies caused by an overly broad single model.

>PRK11587 putative phosphatase; Provisional

Probab=94.71  E-value=0.061  Score=37.14  Aligned_cols=39  Identities=15%  Similarity=-0.003  Sum_probs=33.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+...||+.++|+.|. +.+.++|.|++...++..+++..
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~  120 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA  120 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc
Confidence            4578999999999994 78999999999999887776543

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=94.71  E-value=0.085  Score=38.59  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=42.1

Q ss_pred             cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcce--EEEEe
Q 040601            3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYE--IYLCT   80 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~e--i~i~T   80 (97)
                      .+.+|..++||.||||.+-...|..                             +..-+++.+.|+.|+..+.  ++|.|
T Consensus        14 ~~a~~~~~~lDyDGTl~~i~~~p~~-----------------------------a~~~~~l~~lL~~Las~~~~~v~iiS   64 (266)
T COG1877          14 LNARKRLLFLDYDGTLTEIVPHPEA-----------------------------AVPDDRLLSLLQDLASDPRNVVAIIS   64 (266)
T ss_pred             ccccceEEEEeccccccccccCccc-----------------------------cCCCHHHHHHHHHHHhcCCCeEEEEe
Confidence            4678999999999999998776521                             1234667777777777766  66666


Q ss_pred             CCchHHHHHHHH
Q 040601           81 TGIRSYAVMMAK   92 (97)
Q Consensus        81 ~~~~~YA~~v~~   92 (97)
                      --+.+-.+..+.
T Consensus        65 GR~~~~l~~~~~   76 (266)
T COG1877          65 GRSLAELERLFG   76 (266)
T ss_pred             CCCHHHHHHhcC
Confidence            655555554443

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=94.70  E-value=0.06  Score=37.70  Aligned_cols=38  Identities=16%  Similarity=0.009  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+. +.+.++|.|++.+.+++..++.+
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~  130 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT  130 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC
Confidence            578899999999995 57999999999999999988764

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=94.62  E-value=0.061  Score=39.16  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+. +.+.++|.|++...+++.+++.+
T Consensus       143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~  181 (286)
T PLN02779        143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL  181 (286)
T ss_pred             CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence            578999999999995 67999999999999999988754

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=94.48  E-value=0.07  Score=38.76  Aligned_cols=40  Identities=10%  Similarity=0.116  Sum_probs=35.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+.|. +.+.++|.|++.+.+++.+++.++
T Consensus       140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~g  180 (273)
T PRK13225        140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQG  180 (273)
T ss_pred             cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence            3467899999999995 679999999999999999998764

>PLN02580 trehalose-phosphatase

Probab=94.38  E-value=0.11  Score=39.95  Aligned_cols=60  Identities=23%  Similarity=0.236  Sum_probs=43.5

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      +.++..|+||.||||.--...|.                             -+..-|++++-|++|++.+.++|-|--.
T Consensus       116 ~~k~~~LfLDyDGTLaPIv~~Pd-----------------------------~A~~s~~~~~aL~~La~~~~VAIVSGR~  166 (384)
T PLN02580        116 KGKKIALFLDYDGTLSPIVDDPD-----------------------------RALMSDAMRSAVKNVAKYFPTAIISGRS  166 (384)
T ss_pred             hcCCeEEEEecCCccCCCCCCcc-----------------------------cccCCHHHHHHHHHHhhCCCEEEEeCCC
Confidence            56788999999999985443331                             1335578888888888888888888777


Q ss_pred             hHHHHHHHH
Q 040601           84 RSYAVMMAK   92 (97)
Q Consensus        84 ~~YA~~v~~   92 (97)
                      ..-.+..+.
T Consensus       167 ~~~L~~~l~  175 (384)
T PLN02580        167 RDKVYELVG  175 (384)
T ss_pred             HHHHHHHhC
Confidence            766665553

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=94.36  E-value=0.075  Score=37.11  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=32.7

Q ss_pred             EEecchHHHHHH-HHh-hcceEEEEeCCchHHHHHHHHh
Q 040601           57 VKLRPYIRKFLK-EAS-KMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        57 v~~RP~~~~FL~-~ls-~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      +..+||+.+.|+ .+. +...++|.|++...|++++++.
T Consensus        93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~  131 (210)
T TIGR01545        93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD  131 (210)
T ss_pred             CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence            357999999996 776 6999999999999999999865

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=94.35  E-value=0.06  Score=36.06  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|++|.  +.++|.|++.+.++..+++.++
T Consensus        83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~g  119 (184)
T TIGR01993        83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLG  119 (184)
T ss_pred             CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcC
Confidence            457899999999997  6899999999999999988753

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=94.33  E-value=0.024  Score=37.88  Aligned_cols=38  Identities=16%  Similarity=0.049  Sum_probs=31.6

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...|+ .+.|+.+.+.+.++|.|++.+.+++.+++.+.
T Consensus        87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~  124 (188)
T PRK10725         87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLG  124 (188)
T ss_pred             CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCC
Confidence            445676 48999998778999999999999999988653

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=94.20  E-value=0.091  Score=37.17  Aligned_cols=40  Identities=10%  Similarity=0.047  Sum_probs=34.2

Q ss_pred             EEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           55 FLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        55 ~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....+.||+.++|+++ ++.+.++|+|+++....+.+++..
T Consensus        92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~  132 (220)
T TIGR01691        92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS  132 (220)
T ss_pred             cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence            3456899999999999 578999999999999988887653

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=94.10  E-value=0.091  Score=37.01  Aligned_cols=39  Identities=10%  Similarity=0.258  Sum_probs=35.1

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      -++++||.++|.+++ ++.-.++|-++|...|.+++++.|
T Consensus        71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~i  110 (220)
T COG4359          71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI  110 (220)
T ss_pred             hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh
Confidence            478999999999999 567899999999999999998765

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=94.09  E-value=0.1  Score=36.67  Aligned_cols=39  Identities=13%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..++||+.+.++.+ +..+.++|.|+|...++++|.+.+.
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg  115 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLG  115 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhC
Confidence            88999999999999 5779999999999999999998875

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=94.05  E-value=0.094  Score=40.18  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=34.8

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.+||+.| ...+.++|.|++.+.+++.+++.++
T Consensus       215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lg  254 (381)
T PLN02575        215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIG  254 (381)
T ss_pred             CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcC
Confidence            46789999999999 5679999999999999999998754

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=94.02  E-value=0.14  Score=33.14  Aligned_cols=38  Identities=8%  Similarity=-0.018  Sum_probs=33.1

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHh
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      .....||+.++|+.+ ++.+.++|.|++.+..++.+++.
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~  100 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRK  100 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHH
Confidence            344569999999999 56799999999999999998876

HAD subfamilies caused by an overly broad single model.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=94.01  E-value=0.033  Score=37.88  Aligned_cols=37  Identities=14%  Similarity=-0.025  Sum_probs=31.3

Q ss_pred             ecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..|+..++|+.+. +.+.++|.|++.+.+++.+++.+.
T Consensus       107 ~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~g  144 (197)
T TIGR01548       107 TLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHG  144 (197)
T ss_pred             cccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcC
Confidence            4556699999996 579999999999999999988653

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=94.01  E-value=0.12  Score=36.08  Aligned_cols=40  Identities=13%  Similarity=-0.007  Sum_probs=34.7

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.++|+.|. +.+.++|.|++...++..+++.++
T Consensus        93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~  133 (229)
T PRK13226         93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLG  133 (229)
T ss_pred             cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence            4678999999999995 568999999999999998887653

>PRK11587 putative phosphatase; Provisional

Probab=93.83  E-value=0.03  Score=38.69  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=14.4

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      ...+++|+||||+.|..
T Consensus         3 ~k~viFDlDGTL~Ds~~   19 (218)
T PRK11587          3 CKGFLFDLDGTLVDSLP   19 (218)
T ss_pred             CCEEEEcCCCCcCcCHH
Confidence            35799999999999953

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=93.77  E-value=0.13  Score=42.02  Aligned_cols=19  Identities=32%  Similarity=0.364  Sum_probs=15.5

Q ss_pred             CCCCceEEEeCCCeeeeee
Q 040601            4 RQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~   22 (97)
                      +.++..+++|+||||+-..
T Consensus       489 ~~~~rLi~~D~DGTL~~~~  507 (726)
T PRK14501        489 AASRRLLLLDYDGTLVPFA  507 (726)
T ss_pred             hccceEEEEecCccccCCC
Confidence            4567899999999999653

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=93.75  E-value=0.04  Score=38.09  Aligned_cols=38  Identities=16%  Similarity=0.120  Sum_probs=34.1

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +.+.||+.++|+.+. +.+.++|.|++.+..++.+++.+
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~  129 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF  129 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC
Confidence            568899999999995 67999999999999999998764

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=93.63  E-value=0.12  Score=35.68  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=17.4

Q ss_pred             CCcCCCCceEEEeCCCeeeeee
Q 040601            1 MVYRQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         1 ~ll~~~k~~LVLDLDeTLvhs~   22 (97)
                      |.-+.+-..+++|+||||+++.
T Consensus         1 ~~~~~~~k~iiFD~DGTL~d~~   22 (222)
T PRK10826          1 MSTPRQILAAIFDMDGLLIDSE   22 (222)
T ss_pred             CCCcccCcEEEEcCCCCCCcCH
Confidence            3345567889999999999884

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=93.63  E-value=0.12  Score=34.29  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+. ..+.++|.|++  .+++.+++.+
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~  123 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL  123 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc
Confidence            678999999999995 57999999988  7788887754

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=93.60  E-value=0.63  Score=34.30  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=22.5

Q ss_pred             ecchHHHHHHHH-hhcceEEEEeCCchHHHHH
Q 040601           59 LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVM   89 (97)
Q Consensus        59 ~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~   89 (97)
                      .=|++.+|.+.+ +..+.|++-|+=....-+.
T Consensus       146 Alp~al~ly~~l~~~G~kIf~VSgR~e~~r~a  177 (275)
T TIGR01680       146 ALPETLKNYNKLVSLGFKIIFLSGRLKDKQAV  177 (275)
T ss_pred             CChHHHHHHHHHHHCCCEEEEEeCCchhHHHH
Confidence            447888888888 5788888888776554443

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PHA02597 30

Probab=93.59  E-value=0.043  Score=37.16  Aligned_cols=37  Identities=8%  Similarity=0.068  Sum_probs=27.5

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHH
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAK   92 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~   92 (97)
                      .+...||+.++|++|.+.+.+++.|++.........+
T Consensus        72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~  108 (197)
T PHA02597         72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNR  108 (197)
T ss_pred             hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHh
Confidence            4568999999999998777787778776554443443

2 hypothetical protein; Provisional

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=93.56  E-value=0.14  Score=36.88  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=33.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +..+||+.++|+.+. +.+.++|.|++...+++.+++.+
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~  138 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM  138 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc
Confidence            567999999999995 67999999999999999988764

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=93.53  E-value=0.11  Score=35.81  Aligned_cols=37  Identities=8%  Similarity=-0.045  Sum_probs=32.6

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+...||+.++|+.+.  +.++|.|++.+.+++.+++..
T Consensus        86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~  122 (221)
T PRK10563         86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKT  122 (221)
T ss_pred             cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhc
Confidence            4677899999999994  899999999999999988754

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=93.35  E-value=0.043  Score=37.66  Aligned_cols=17  Identities=29%  Similarity=0.467  Sum_probs=14.4

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      ...+++|+||||+++..
T Consensus         3 ~~~viFD~DGTL~ds~~   19 (214)
T PRK13288          3 INTVLFDLDGTLINTNE   19 (214)
T ss_pred             ccEEEEeCCCcCccCHH
Confidence            45789999999999853

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=93.29  E-value=0.17  Score=33.63  Aligned_cols=35  Identities=11%  Similarity=0.162  Sum_probs=30.1

Q ss_pred             chHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           61 PYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        61 P~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      |++.+|++.+ ++.++++|-|++...+++++++.+.
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~  127 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLG  127 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcC
Confidence            4444999998 7899999999999999999997653

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=93.23  E-value=0.04  Score=36.91  Aligned_cols=14  Identities=36%  Similarity=0.420  Sum_probs=12.3

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      .+++||||||+.+.
T Consensus         2 ~viFDlDGTL~ds~   15 (184)
T TIGR01993         2 VWFFDLDNTLYPHS   15 (184)
T ss_pred             eEEEeCCCCCCCCc
Confidence            57999999999874

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=93.15  E-value=0.37  Score=34.93  Aligned_cols=24  Identities=38%  Similarity=0.260  Sum_probs=18.4

Q ss_pred             CCcCCCCceEEEeCCCeeeeeecc
Q 040601            1 MVYRQKKLHLVLDLDHTLLHAVDI   24 (97)
Q Consensus         1 ~ll~~~k~~LVLDLDeTLvhs~~~   24 (97)
                      |+-.+-.+.+.+|||+|||-.+.+
T Consensus         1 m~s~~~~~lIFtDlD~TLl~~~ye   24 (274)
T COG3769           1 MFSIQMPLLIFTDLDGTLLPHSYE   24 (274)
T ss_pred             CCccccceEEEEcccCcccCCCCC
Confidence            455667889999999999974443

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=93.09  E-value=0.06  Score=38.82  Aligned_cols=18  Identities=17%  Similarity=0.185  Sum_probs=14.8

Q ss_pred             CCCceEEEeCCCeeeeee
Q 040601            5 QKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~   22 (97)
                      ..-+.+++|+||||+.|.
T Consensus        22 ~~~k~vIFDlDGTLvDS~   39 (260)
T PLN03243         22 CGWLGVVLEWEGVIVEDD   39 (260)
T ss_pred             CCceEEEEeCCCceeCCc
Confidence            345678999999999984

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=93.09  E-value=0.055  Score=37.15  Aligned_cols=16  Identities=25%  Similarity=0.243  Sum_probs=13.6

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      ..+++|+||||+.+..
T Consensus         2 k~iiFD~DGTL~ds~~   17 (220)
T TIGR03351         2 SLVVLDMAGTTVDEDG   17 (220)
T ss_pred             cEEEEecCCCeeccCc
Confidence            4789999999999853

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=93.08  E-value=0.44  Score=37.94  Aligned_cols=40  Identities=25%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .-..||++.++++++. ..++++|.|+..+.+|+.+++.+.
T Consensus       403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lg  443 (562)
T TIGR01511       403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELG  443 (562)
T ss_pred             cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcC
Confidence            4468999999999995 579999999999999999998764

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.98  E-value=0.052  Score=43.01  Aligned_cols=71  Identities=25%  Similarity=0.274  Sum_probs=38.1

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      ...|++||||||+||.-...-    ..+ -.-+.-.++..        |..     ---..+|...+ .+.+=+.|++-+
T Consensus       219 g~~kK~LVLDLDNTLWGGVIG----edG-v~GI~Ls~~~~--------G~~-----fk~fQ~~Ik~l~kqGVlLav~SKN  280 (574)
T COG3882         219 GKSKKALVLDLDNTLWGGVIG----EDG-VDGIRLSNSAE--------GEA-----FKTFQNFIKGLKKQGVLLAVCSKN  280 (574)
T ss_pred             CcccceEEEecCCcccccccc----ccc-ccceeecCCCC--------chh-----HHHHHHHHHHHHhccEEEEEecCC
Confidence            567899999999999876532    110 00000000000        000     01145566666 356667777777


Q ss_pred             chHHHHHHHH
Q 040601           83 IRSYAVMMAK   92 (97)
Q Consensus        83 ~~~YA~~v~~   92 (97)
                      ...=|+.+..
T Consensus       281 ~~~da~evF~  290 (574)
T COG3882         281 TEKDAKEVFR  290 (574)
T ss_pred             chhhHHHHHh
Confidence            7777766653

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=92.90  E-value=0.053  Score=37.88  Aligned_cols=16  Identities=38%  Similarity=0.544  Sum_probs=14.0

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      ...+++|+||||+.|.
T Consensus        12 ~k~viFD~DGTL~Ds~   27 (229)
T PRK13226         12 PRAVLFDLDGTLLDSA   27 (229)
T ss_pred             CCEEEEcCcCccccCH
Confidence            4579999999999994

>PRK11590 hypothetical protein; Provisional

Probab=92.87  E-value=0.066  Score=37.07  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=13.9

Q ss_pred             CCCceEEEeCCCeeeee
Q 040601            5 QKKLHLVLDLDHTLLHA   21 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs   21 (97)
                      ..++.+++|+||||++.
T Consensus         4 ~~~k~~iFD~DGTL~~~   20 (211)
T PRK11590          4 HERRVVFFDLDGTLHQQ   20 (211)
T ss_pred             ccceEEEEecCCCCccc
Confidence            35668999999999944

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=92.83  E-value=0.071  Score=36.14  Aligned_cols=37  Identities=14%  Similarity=0.028  Sum_probs=29.6

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....||+.++|+.+. ..+.++|.||+.+.. ..+++.+
T Consensus       104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~  141 (203)
T TIGR02252       104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEAL  141 (203)
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHC
Confidence            367899999999996 469999999998764 6666543

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=92.81  E-value=0.053  Score=37.11  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=13.8

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      ..+++|+||||+.+..
T Consensus         3 ~~viFDlDGTL~ds~~   18 (221)
T TIGR02253         3 KAIFFDLDDTLIDTSG   18 (221)
T ss_pred             eEEEEeCCCCCcCCCC
Confidence            4789999999999854

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=92.80  E-value=0.052  Score=39.16  Aligned_cols=16  Identities=38%  Similarity=0.540  Sum_probs=14.3

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      ++.+++|+||||+++.
T Consensus        13 ~k~viFDlDGTL~Ds~   28 (272)
T PRK13223         13 PRLVMFDLDGTLVDSV   28 (272)
T ss_pred             CCEEEEcCCCccccCH
Confidence            5689999999999994

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=92.77  E-value=0.23  Score=34.53  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=35.3

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...-||+.+.|..+ ++.|.++|.|+.....++.+++.++
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~g  127 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALG  127 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            57899999999999 5789999999999999999998753

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=92.36  E-value=0.089  Score=36.00  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=15.5

Q ss_pred             CCcCCCCceEEEeCCCeeeeee
Q 040601            1 MVYRQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         1 ~ll~~~k~~LVLDLDeTLvhs~   22 (97)
                      |-+.. -..+++|+||||+++.
T Consensus         1 ~~~~~-~~~iiFD~DGTL~d~~   21 (226)
T PRK13222          1 MKFMD-IRAVAFDLDGTLVDSA   21 (226)
T ss_pred             CCCCc-CcEEEEcCCcccccCH
Confidence            33444 3478999999999884

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=92.31  E-value=0.64  Score=31.13  Aligned_cols=42  Identities=26%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             EEEEEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           54 LFLVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        54 ~~~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...-.+||++.++|++|.+ .+.++|.|......|..+++.+.
T Consensus       123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lg  165 (215)
T PF00702_consen  123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLG  165 (215)
T ss_dssp             EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT
T ss_pred             eecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccc
Confidence            3455789999999999965 59999999999999999998764

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=92.29  E-value=0.081  Score=36.85  Aligned_cols=18  Identities=28%  Similarity=0.460  Sum_probs=15.3

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      ...++++|+||||+.|..
T Consensus         3 ~~~~iiFDlDGTL~Ds~~   20 (220)
T COG0546           3 MIKAILFDLDGTLVDSAE   20 (220)
T ss_pred             CCCEEEEeCCCccccChH
Confidence            356899999999999964

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=92.22  E-value=0.061  Score=39.05  Aligned_cols=17  Identities=24%  Similarity=0.493  Sum_probs=14.4

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ....+++|+||||+.|.
T Consensus        61 ~~k~vIFDlDGTLiDS~   77 (273)
T PRK13225         61 TLQAIIFDFDGTLVDSL   77 (273)
T ss_pred             hcCEEEECCcCccccCH
Confidence            34579999999999995

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=92.22  E-value=0.065  Score=35.53  Aligned_cols=16  Identities=13%  Similarity=0.414  Sum_probs=13.8

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      ..+++|+||||+.+..
T Consensus         2 ~~iiFD~DGTL~ds~~   17 (185)
T TIGR02009         2 KAVIFDMDGVIVDTAP   17 (185)
T ss_pred             CeEEEcCCCcccCChH
Confidence            4689999999999964

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=92.17  E-value=0.31  Score=33.00  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=12.9

Q ss_pred             eEEEeCCCeeeeeec
Q 040601            9 HLVLDLDHTLLHAVD   23 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~   23 (97)
                      .+++|+||||+.|..
T Consensus         2 ~viFD~DGTLiDs~~   16 (197)
T TIGR01548         2 ALVLDMDGVMADVSQ   16 (197)
T ss_pred             ceEEecCceEEechH
Confidence            479999999999853

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=92.13  E-value=0.062  Score=34.78  Aligned_cols=14  Identities=29%  Similarity=0.605  Sum_probs=12.5

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      ++++|+||||+.+.
T Consensus         1 ~iifD~DGTL~d~~   14 (154)
T TIGR01549         1 AILFDIDGTLVDSS   14 (154)
T ss_pred             CeEecCCCcccccH
Confidence            47999999999985

HAD subfamilies caused by an overly broad single model.

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=92.11  E-value=0.078  Score=37.11  Aligned_cols=16  Identities=38%  Similarity=0.472  Sum_probs=13.8

Q ss_pred             CCceEEEeCCCeeeee
Q 040601            6 KKLHLVLDLDHTLLHA   21 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs   21 (97)
                      +-+.+++||||||+.+
T Consensus         9 ~~k~vIFDlDGTL~d~   24 (224)
T PRK14988          9 DVDTVLLDMDGTLLDL   24 (224)
T ss_pred             cCCEEEEcCCCCccch
Confidence            4567999999999996

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=92.01  E-value=0.07  Score=37.81  Aligned_cols=16  Identities=25%  Similarity=0.308  Sum_probs=13.9

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      ..+++|+||||+.|..
T Consensus        23 k~viFDlDGTLiDs~~   38 (248)
T PLN02770         23 EAVLFDVDGTLCDSDP   38 (248)
T ss_pred             CEEEEcCCCccCcCHH
Confidence            5789999999999853

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=91.75  E-value=0.12  Score=37.65  Aligned_cols=17  Identities=24%  Similarity=0.255  Sum_probs=14.6

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +-..+|+|+||||+.|.
T Consensus        39 ~~k~VIFDlDGTLvDS~   55 (286)
T PLN02779         39 LPEALLFDCDGVLVETE   55 (286)
T ss_pred             CCcEEEEeCceeEEccc
Confidence            34579999999999997

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=91.70  E-value=0.07  Score=35.38  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=27.5

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.| +..+.++|.|++..  +..+++.+
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~  122 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL  122 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc
Confidence            46789999999999 46799999998643  45555544

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=91.70  E-value=0.059  Score=36.71  Aligned_cols=13  Identities=38%  Similarity=0.682  Sum_probs=11.6

Q ss_pred             EEEeCCCeeeeee
Q 040601           10 LVLDLDHTLLHAV   22 (97)
Q Consensus        10 LVLDLDeTLvhs~   22 (97)
                      +++||||||+.|.
T Consensus         1 iiFDlDGTL~Ds~   13 (205)
T TIGR01454         1 VVFDLDGVLVDSF   13 (205)
T ss_pred             CeecCcCccccCH
Confidence            5899999999984

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=91.66  E-value=0.34  Score=33.10  Aligned_cols=38  Identities=26%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...|++.++|+.+...|.++|.|||...++...+..+
T Consensus        98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~  135 (229)
T COG1011          98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQL  135 (229)
T ss_pred             CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHc
Confidence            68889999999999766999999999999999888754

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=91.60  E-value=1.7  Score=29.48  Aligned_cols=65  Identities=12%  Similarity=0.011  Sum_probs=40.0

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchH-HHHHHHHhhcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYI-RKFLKEASKMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~-~~FL~~ls~~~ei~i~T~~~~~   85 (97)
                      -+.+|+|.||+|-..+..-  .+.+                    .....+..|-|. -..|+  ...+.++|.|++...
T Consensus         7 i~~~v~d~dGv~tdg~~~~--~~~g--------------------~~~~~~~~~D~~~~~~L~--~~Gi~laIiT~k~~~   62 (169)
T TIGR02726         7 IKLVILDVDGVMTDGRIVI--NDEG--------------------IESRNFDIKDGMGVIVLQ--LCGIDVAIITSKKSG   62 (169)
T ss_pred             CeEEEEeCceeeECCeEEE--cCCC--------------------cEEEEEecchHHHHHHHH--HCCCEEEEEECCCcH
Confidence            4678999999998664311  1110                    011123344443 22222  457899999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      +++.+++.+.
T Consensus        63 ~~~~~l~~lg   72 (169)
T TIGR02726        63 AVRHRAEELK   72 (169)
T ss_pred             HHHHHHHHCC
Confidence            9999888763

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=91.54  E-value=0.087  Score=34.66  Aligned_cols=15  Identities=27%  Similarity=0.536  Sum_probs=12.6

Q ss_pred             eEEEeCCCeeeeeec
Q 040601            9 HLVLDLDHTLLHAVD   23 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~   23 (97)
                      .+++||||||+.+..
T Consensus         1 ~vlFDlDgtLv~~~~   15 (183)
T TIGR01509         1 AILFDLDGVLVDTSS   15 (183)
T ss_pred             CeeeccCCceechHH
Confidence            379999999999943

HAD subfamilies caused by an overly broad single model.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=91.51  E-value=0.092  Score=36.94  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=25.2

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchH
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRS   85 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~   85 (97)
                      +...||+.++|+.|.+.+.++|.||+...
T Consensus       112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~  140 (238)
T PRK10748        112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ  140 (238)
T ss_pred             CCCCccHHHHHHHHHcCCCEEEEECCCch
Confidence            55679999999999877999999998754

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=91.24  E-value=0.072  Score=36.20  Aligned_cols=13  Identities=38%  Similarity=0.705  Sum_probs=11.5

Q ss_pred             EEEeCCCeeeeee
Q 040601           10 LVLDLDHTLLHAV   22 (97)
Q Consensus        10 LVLDLDeTLvhs~   22 (97)
                      +|+|+||||+.|.
T Consensus         1 viFD~DGTL~Ds~   13 (213)
T TIGR01449         1 VLFDLDGTLVDSA   13 (213)
T ss_pred             CeecCCCccccCH
Confidence            5899999999874

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=91.07  E-value=0.11  Score=35.44  Aligned_cols=16  Identities=38%  Similarity=0.517  Sum_probs=13.7

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      ..+++|+||||+.+..
T Consensus         2 k~viFD~DGTL~d~~~   17 (224)
T TIGR02254         2 KTLLFDLDDTILDFQA   17 (224)
T ss_pred             CEEEEcCcCcccccch
Confidence            4689999999999854

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=91.02  E-value=0.11  Score=35.20  Aligned_cols=15  Identities=33%  Similarity=0.352  Sum_probs=13.0

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         2 k~viFD~dgTLiD~~   16 (198)
T TIGR01428         2 KALVFDVYGTLFDVH   16 (198)
T ss_pred             cEEEEeCCCcCccHH
Confidence            368999999999875

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=91.00  E-value=0.1  Score=34.45  Aligned_cols=33  Identities=9%  Similarity=-0.073  Sum_probs=28.3

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+..+||+.++|+.      ++|.||+.+.+++.+++.+
T Consensus        88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~  120 (175)
T TIGR01493        88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQA  120 (175)
T ss_pred             cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHC
Confidence            35689999999983      7899999999999988764

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=90.95  E-value=0.1  Score=33.51  Aligned_cols=14  Identities=36%  Similarity=0.610  Sum_probs=12.3

Q ss_pred             EEEeCCCeeeeeec
Q 040601           10 LVLDLDHTLLHAVD   23 (97)
Q Consensus        10 LVLDLDeTLvhs~~   23 (97)
                      +++|+||||+++..
T Consensus         1 iifD~dgtL~d~~~   14 (176)
T PF13419_consen    1 IIFDLDGTLVDTDP   14 (176)
T ss_dssp             EEEESBTTTEEHHH
T ss_pred             cEEECCCCcEeCHH
Confidence            68999999999865

...

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=90.94  E-value=0.14  Score=35.01  Aligned_cols=31  Identities=23%  Similarity=0.217  Sum_probs=26.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHH
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSY   86 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~Y   86 (97)
                      .+...||+.++|+.|. +.+.++|.||+....
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~  123 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTD  123 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            4668999999999995 579999999987644

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PLN02940 riboflavin kinase

Probab=90.89  E-value=0.35  Score=36.75  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHH
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAK   92 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~   92 (97)
                      +...||+.++|+.| +..+.++|.|++.+.+++.+++
T Consensus        92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~  128 (382)
T PLN02940         92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKIS  128 (382)
T ss_pred             CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHH
Confidence            46789999999999 5679999999999999998775

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=90.81  E-value=0.42  Score=33.32  Aligned_cols=62  Identities=21%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             EEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEE--EecchHHHHHHHHh-hcceEEEEeCCch
Q 040601           10 LVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLV--KLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus        10 LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      ++.||||||+++..  .+++.  ......   ......      -..+  +..+.++++++.+. +....+|..+|..
T Consensus         2 i~~DlDgTLl~~~~--~~~~~--~~~~~~---~~~gi~------~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~   66 (236)
T TIGR02471         2 IITDLDNTLLGDDE--GLASF--VELLRG---SGDAVG------FGIATGRSVESAKSRYAKLNLPSPDVLIARVGTE   66 (236)
T ss_pred             eEEeccccccCCHH--HHHHH--HHHHHh---cCCCce------EEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCce
Confidence            78999999998532  22222  111110   111111      1223  34456888887774 2334466666654

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=90.57  E-value=0.44  Score=31.70  Aligned_cols=18  Identities=28%  Similarity=0.475  Sum_probs=14.9

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      +...+++|+||||+.|..
T Consensus         4 ~~~~viFD~DGTLiDs~~   21 (188)
T PRK10725          4 RYAGLIFDMDGTILDTEP   21 (188)
T ss_pred             cceEEEEcCCCcCccCHH
Confidence            456789999999999853

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=90.53  E-value=0.51  Score=37.42  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=36.8

Q ss_pred             EEEEEecchHHHHHHHHh-hc-ceEEEEeCCchHHHHHHHHhhC
Q 040601           54 LFLVKLRPYIRKFLKEAS-KM-YEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        54 ~~~v~~RP~~~~FL~~ls-~~-~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+.-..|||+.+.|+++. .. ++++|.|+..+.+|+.+++.++
T Consensus       380 ~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lg  423 (556)
T TIGR01525       380 ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELG  423 (556)
T ss_pred             EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhC
Confidence            334579999999999994 57 9999999999999999998875

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=90.48  E-value=0.65  Score=31.36  Aligned_cols=14  Identities=29%  Similarity=0.214  Sum_probs=12.5

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      .+++||||||+.+.
T Consensus         2 ~viFDlDGTL~d~~   15 (203)
T TIGR02252         2 LITFDAVGTLLALK   15 (203)
T ss_pred             eEEEecCCceeeeC
Confidence            68999999999874

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=90.45  E-value=0.16  Score=34.03  Aligned_cols=15  Identities=33%  Similarity=0.434  Sum_probs=13.1

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+|+|+||||+.+
T Consensus         4 ~k~viFD~DGTLid~   18 (201)
T TIGR01491         4 IKLIIFDLDGTLTDV   18 (201)
T ss_pred             ceEEEEeCCCCCcCC
Confidence            457999999999985

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=90.30  E-value=0.15  Score=33.73  Aligned_cols=17  Identities=29%  Similarity=0.305  Sum_probs=14.5

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      |..+|+|+||||+....
T Consensus         1 ~~~iiFD~dgTL~~~~~   17 (188)
T TIGR01489         1 KVVVVSDFDGTITLNDS   17 (188)
T ss_pred             CeEEEEeCCCcccCCCc
Confidence            57899999999998754

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PRK09449 dUMP phosphatase; Provisional

Probab=90.20  E-value=0.13  Score=35.31  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=12.6

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      -..+++||||||++.
T Consensus         3 ~k~iiFDlDGTLid~   17 (224)
T PRK09449          3 YDWILFDADETLFHF   17 (224)
T ss_pred             ccEEEEcCCCchhcc
Confidence            357999999999963

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=89.38  E-value=1.1  Score=30.41  Aligned_cols=59  Identities=17%  Similarity=0.157  Sum_probs=33.3

Q ss_pred             eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchHHH
Q 040601            9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYA   87 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA   87 (97)
                      .+|-|+|||+--|-..-++.+                    .-+..   +.+||+.++.+.+. +.|.++=-|+-.-..|
T Consensus         1 VVvsDIDGTiT~SD~~G~i~~--------------------~~G~d---~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa   57 (157)
T PF08235_consen    1 VVVSDIDGTITKSDVLGHILP--------------------ILGKD---WTHPGAAELYRKIADNGYKILYLTARPIGQA   57 (157)
T ss_pred             CEEEeccCCcCccchhhhhhh--------------------ccCch---hhhhcHHHHHHHHHHCCeEEEEECcCcHHHH
Confidence            378999999988842111000                    00111   46777777777774 5566655555544444


Q ss_pred             HHH
Q 040601           88 VMM   90 (97)
Q Consensus        88 ~~v   90 (97)
                      +..
T Consensus        58 ~~T   60 (157)
T PF08235_consen   58 NRT   60 (157)
T ss_pred             HHH
Confidence            433

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=89.20  E-value=0.19  Score=34.51  Aligned_cols=17  Identities=24%  Similarity=0.192  Sum_probs=14.2

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      ...+++|+||||+.+..
T Consensus         4 ~~~viFD~DGTL~d~~~   20 (221)
T PRK10563          4 IEAVFFDCDGTLVDSEV   20 (221)
T ss_pred             CCEEEECCCCCCCCChH
Confidence            46789999999998743

>PLN02954 phosphoserine phosphatase

Probab=89.10  E-value=0.22  Score=34.22  Aligned_cols=18  Identities=17%  Similarity=0.158  Sum_probs=14.7

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      ..+.+++|+||||+.+..
T Consensus        11 ~~k~viFDfDGTL~~~~~   28 (224)
T PLN02954         11 SADAVCFDVDSTVCVDEG   28 (224)
T ss_pred             cCCEEEEeCCCcccchHH
Confidence            357889999999998743

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=88.85  E-value=0.22  Score=33.71  Aligned_cols=14  Identities=29%  Similarity=0.370  Sum_probs=11.7

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      ..+++|+||||+..
T Consensus         2 ~~v~FD~DGTL~~~   15 (205)
T PRK13582          2 EIVCLDLEGVLVPE   15 (205)
T ss_pred             eEEEEeCCCCChhh
Confidence            36899999999953

>PHA02597 30

Probab=88.77  E-value=0.66  Score=31.27  Aligned_cols=16  Identities=31%  Similarity=0.343  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         2 ~k~viFDlDGTLiD~~   17 (197)
T PHA02597          2 KPTILTDVDGVLLSWQ   17 (197)
T ss_pred             CcEEEEecCCceEchh
Confidence            4679999999999964

2 hypothetical protein; Provisional

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=88.71  E-value=0.19  Score=35.17  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=33.6

Q ss_pred             EEEecchHHHHHHHHhhc-ceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEASKM-YEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~-~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      -+...||+.+||+.|... .-+++.|++.+.-++.+++.+
T Consensus        84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~  123 (221)
T COG0637          84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL  123 (221)
T ss_pred             CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc
Confidence            468999999999999654 999999999999998888654

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=88.63  E-value=0.81  Score=31.06  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHH
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMM   90 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v   90 (97)
                      +...+||+.++|+.+. +.+.++|.||+.+..+...
T Consensus        82 ~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~  117 (199)
T PRK09456         82 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFW  117 (199)
T ss_pred             HhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHH
Confidence            4568999999999995 6799999999988765543

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=88.56  E-value=0.77  Score=36.32  Aligned_cols=41  Identities=20%  Similarity=0.137  Sum_probs=36.2

Q ss_pred             EEEEecchHHHHHHHHh-hcc-eEEEEeCCchHHHHHHHHhhC
Q 040601           55 FLVKLRPYIRKFLKEAS-KMY-EIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        55 ~~v~~RP~~~~FL~~ls-~~~-ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..-..|||+.+.++++. ..+ +++|.|+..+.+|+.+++.+.
T Consensus       359 ~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lg  401 (536)
T TIGR01512       359 LSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELG  401 (536)
T ss_pred             EeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcC
Confidence            34578999999999995 578 999999999999999998864

.

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=88.49  E-value=1  Score=32.05  Aligned_cols=13  Identities=46%  Similarity=0.478  Sum_probs=12.1

Q ss_pred             CceEEEeCCCeee
Q 040601            7 KLHLVLDLDHTLL   19 (97)
Q Consensus         7 k~~LVLDLDeTLv   19 (97)
                      |+.|+-|||+||+
T Consensus         2 ~~ll~sDlD~Tl~   14 (247)
T PF05116_consen    2 PRLLASDLDGTLI   14 (247)
T ss_dssp             SEEEEEETBTTTB
T ss_pred             CEEEEEECCCCCc
Confidence            6789999999999

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=88.49  E-value=0.54  Score=31.99  Aligned_cols=15  Identities=20%  Similarity=0.348  Sum_probs=12.9

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++||||||+.+.
T Consensus         3 k~viFDldGtL~d~~   17 (211)
T TIGR02247         3 KAVIFDFGGVLLPSP   17 (211)
T ss_pred             eEEEEecCCceecCH
Confidence            379999999999873

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=88.43  E-value=0.29  Score=37.53  Aligned_cols=18  Identities=6%  Similarity=0.150  Sum_probs=15.1

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      +-+.+|+|+|||||.|..
T Consensus       130 ~~~~VIFDlDGTLIDS~~  147 (381)
T PLN02575        130 GWLGAIFEWEGVIIEDNP  147 (381)
T ss_pred             CCCEEEEcCcCcceeCHH
Confidence            456899999999998864

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=88.41  E-value=0.86  Score=30.07  Aligned_cols=15  Identities=20%  Similarity=0.521  Sum_probs=12.8

Q ss_pred             eEEEeCCCeeeeeec
Q 040601            9 HLVLDLDHTLLHAVD   23 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~   23 (97)
                      .+++|+||||+.+..
T Consensus         1 ~iiFD~DGTL~ds~~   15 (185)
T TIGR01990         1 AVIFDLDGVITDTAE   15 (185)
T ss_pred             CeEEcCCCccccChH
Confidence            379999999999864

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>PLN02811 hydrolase

Probab=88.33  E-value=0.72  Score=31.85  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=28.3

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHH
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVM   89 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~   89 (97)
                      .+...||+.++|+.|. ..+.++|-|++.+.++..
T Consensus        76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~  110 (220)
T PLN02811         76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDL  110 (220)
T ss_pred             hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHH
Confidence            3567899999999995 579999999999876553

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=88.30  E-value=0.22  Score=38.52  Aligned_cols=16  Identities=31%  Similarity=0.530  Sum_probs=13.8

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      ..+++|+||||+.|..
T Consensus       242 k~vIFDlDGTLiDs~~  257 (459)
T PRK06698        242 QALIFDMDGTLFQTDK  257 (459)
T ss_pred             hheeEccCCceecchh
Confidence            5789999999999854

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=87.25  E-value=1  Score=31.47  Aligned_cols=15  Identities=27%  Similarity=0.505  Sum_probs=13.2

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++|+|||||.|.
T Consensus         3 ~avIFD~DGvLvDse   17 (221)
T COG0637           3 KAVIFDMDGTLVDSE   17 (221)
T ss_pred             cEEEEcCCCCcCcch
Confidence            468999999999994

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=87.01  E-value=1.6  Score=36.45  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=35.8

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh--cceEEEEeC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK--MYEIYLCTT   81 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~--~~ei~i~T~   81 (97)
                      +.++..|+||.||||+.-...+. .+                         .-+..-|++.+-|+.|++  .-.++|-|-
T Consensus       504 ~a~~rll~LDyDGTL~~~~~~~~-~p-------------------------~~a~p~~~l~~~L~~L~~d~~~~V~IvSG  557 (797)
T PLN03063        504 KSNNRLLILGFYGTLTEPRNSQI-KE-------------------------MDLGLHPELKETLKALCSDPKTTVVVLSR  557 (797)
T ss_pred             hccCeEEEEecCccccCCCCCcc-cc-------------------------ccCCCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            45678899999999994332210 00                         012234667777777753  345666665


Q ss_pred             CchHHHHHHH
Q 040601           82 GIRSYAVMMA   91 (97)
Q Consensus        82 ~~~~YA~~v~   91 (97)
                      -..+-.+..+
T Consensus       558 R~~~~L~~~~  567 (797)
T PLN03063        558 SGKDILDKNF  567 (797)
T ss_pred             CCHHHHHHHh
Confidence            5555555444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=86.98  E-value=1.2  Score=38.36  Aligned_cols=37  Identities=8%  Similarity=-0.023  Sum_probs=33.2

Q ss_pred             ecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           59 LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        59 ~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..||+.++|+.| ++.+.++|.|++.+.+++.+++.+.
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~g  199 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAG  199 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcC
Confidence            589999999999 5789999999999999999987653

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=85.94  E-value=0.43  Score=33.02  Aligned_cols=17  Identities=18%  Similarity=0.387  Sum_probs=14.4

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      |.++++|+||||+.+..
T Consensus         3 ~~~vifDfDgTi~~~d~   19 (219)
T PRK09552          3 SIQIFCDFDGTITNNDN   19 (219)
T ss_pred             CcEEEEcCCCCCCcchh
Confidence            56899999999998754

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=85.89  E-value=0.44  Score=33.45  Aligned_cols=16  Identities=44%  Similarity=0.542  Sum_probs=14.1

Q ss_pred             CCCceEEEeCCCeeee
Q 040601            5 QKKLHLVLDLDHTLLH   20 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvh   20 (97)
                      ..+..+|+|||+||+.
T Consensus         3 ~~~~L~vFD~D~TLi~   18 (212)
T COG0560           3 RMKKLAVFDLDGTLIN   18 (212)
T ss_pred             CccceEEEecccchhh
Confidence            4577889999999999

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=85.84  E-value=1.4  Score=31.86  Aligned_cols=40  Identities=13%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             EEEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      -+..-||.-+.++.+++  .||++|-+.+..-+.+.+++..+
T Consensus        82 ~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~  123 (256)
T KOG3120|consen   82 SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAG  123 (256)
T ss_pred             cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHcc
Confidence            45678999998888853  48999999999999999998753

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=85.66  E-value=4.5  Score=29.16  Aligned_cols=89  Identities=16%  Similarity=0.054  Sum_probs=52.6

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhh---CCCCCC--Ccee--ee---cceEEEEEecchHHHHHHHHh-hcc
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKL---GSSSSD--GDLF--KM---AGELFLVKLRPYIRKFLKEAS-KMY   74 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~---~~~~~~--~~~~--~~---~~~~~~v~~RP~~~~FL~~ls-~~~   74 (97)
                      ....+|+|+|+||+-+...-.-+.|....+..-   ..+...  ...+  .+   ....-....-|.+-++++.++ +..
T Consensus        19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~   98 (252)
T PF11019_consen   19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI   98 (252)
T ss_pred             CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence            567789999999997762212233421112110   010000  0111  00   012335567889999999996 679


Q ss_pred             eEEEEeCCchHHHHHHHHhh
Q 040601           75 EIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        75 ei~i~T~~~~~YA~~v~~~L   94 (97)
                      -++..|+..+.+...-++.|
T Consensus        99 ~v~alT~~~~~~~~~t~~~L  118 (252)
T PF11019_consen   99 PVIALTARGPNMEDWTLREL  118 (252)
T ss_pred             cEEEEcCCChhhHHHHHHHH
Confidence            99999999988887766543

The function is not known.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=85.60  E-value=0.47  Score=31.24  Aligned_cols=14  Identities=29%  Similarity=0.415  Sum_probs=12.3

Q ss_pred             EEEeCCCeeeeeec
Q 040601           10 LVLDLDHTLLHAVD   23 (97)
Q Consensus        10 LVLDLDeTLvhs~~   23 (97)
                      +++|+||||+.+..
T Consensus         2 viFD~DGTL~D~~~   15 (175)
T TIGR01493         2 MVFDVYGTLVDVHG   15 (175)
T ss_pred             eEEecCCcCcccHH
Confidence            78999999999863

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=85.55  E-value=0.48  Score=32.35  Aligned_cols=18  Identities=33%  Similarity=0.342  Sum_probs=14.8

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      ....+++|+||||++...
T Consensus         3 ~~k~i~FD~d~TL~d~~~   20 (229)
T COG1011           3 MIKAILFDLDGTLLDFDS   20 (229)
T ss_pred             ceeEEEEecCCcccccch
Confidence            456789999999999754

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=85.31  E-value=0.38  Score=33.41  Aligned_cols=12  Identities=33%  Similarity=0.487  Sum_probs=10.8

Q ss_pred             EEEeCCCeeeee
Q 040601           10 LVLDLDHTLLHA   21 (97)
Q Consensus        10 LVLDLDeTLvhs   21 (97)
                      .++|||+|||..
T Consensus         4 a~FDlD~TLi~~   15 (203)
T TIGR02137         4 ACLDLEGVLVPE   15 (203)
T ss_pred             EEEeCCcccHHH
Confidence            799999999965

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>PLN02940 riboflavin kinase

Probab=85.11  E-value=0.49  Score=35.98  Aligned_cols=16  Identities=50%  Similarity=0.677  Sum_probs=13.5

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      -..+++|+||||+.+.
T Consensus        11 ik~VIFDlDGTLvDt~   26 (382)
T PLN02940         11 VSHVILDLDGTLLNTD   26 (382)
T ss_pred             CCEEEECCcCcCCcCH
Confidence            3568999999999985

>PLN02382 probable sucrose-phosphatase

Probab=84.84  E-value=0.56  Score=36.11  Aligned_cols=19  Identities=37%  Similarity=0.567  Sum_probs=15.7

Q ss_pred             cCCCCceEEEeCCCeeeee
Q 040601            3 YRQKKLHLVLDLDHTLLHA   21 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs   21 (97)
                      -...++.|+.||||||+.+
T Consensus         5 ~~~~~~lI~sDLDGTLL~~   23 (413)
T PLN02382          5 SGSPRLMIVSDLDHTMVDH   23 (413)
T ss_pred             cCCCCEEEEEcCCCcCcCC
Confidence            3556888999999999965

>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice

Probab=84.80  E-value=1.5  Score=31.82  Aligned_cols=38  Identities=11%  Similarity=0.219  Sum_probs=28.7

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHh
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      -+.+|.|..+|++.|. ..--+.||+||.-.-.+.+++.
T Consensus        88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q  126 (246)
T PF05822_consen   88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQ  126 (246)
T ss_dssp             ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHH
T ss_pred             chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHH
Confidence            5889999999999996 5679999999999988888764

The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=84.53  E-value=1.3  Score=31.03  Aligned_cols=50  Identities=20%  Similarity=0.121  Sum_probs=28.7

Q ss_pred             EEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcce--EEEEeCCchHHHH
Q 040601           11 VLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYE--IYLCTTGIRSYAV   88 (97)
Q Consensus        11 VLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~e--i~i~T~~~~~YA~   88 (97)
                      .||.||||.--...|.                             -...-|++.+.|++|++...  ++|-|.-...-.+
T Consensus         1 ~lDyDGTL~p~~~~p~-----------------------------~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~   51 (235)
T PF02358_consen    1 FLDYDGTLAPIVDDPD-----------------------------AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLE   51 (235)
T ss_dssp             EEE-TTTSS---S-GG-----------------------------G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHH
T ss_pred             CcccCCccCCCCCCcc-----------------------------ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhH
Confidence            4899999986654331                             12366889999999987666  7777776666544


Q ss_pred             H
Q 040601           89 M   89 (97)
Q Consensus        89 ~   89 (97)
                      .
T Consensus        52 ~   52 (235)
T PF02358_consen   52 R   52 (235)
T ss_dssp             H
T ss_pred             H
Confidence            3

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=83.79  E-value=0.58  Score=31.75  Aligned_cols=14  Identities=14%  Similarity=0.347  Sum_probs=12.3

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      .+|+||||||++..
T Consensus         2 ~viFDldgvL~d~~   15 (199)
T PRK09456          2 LYIFDLGNVIVDID   15 (199)
T ss_pred             EEEEeCCCccccCc
Confidence            58999999999874

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=83.59  E-value=2  Score=33.40  Aligned_cols=58  Identities=16%  Similarity=0.145  Sum_probs=34.3

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      +.+.+.+-+|+|+|||.+....-.+..                     ... |-..-|.+-.=|+++ .+.|-++|||+.
T Consensus        72 ~~~~K~i~FD~dgtlI~t~sg~vf~~~---------------------~~d-w~~l~~~vp~Klktl~~~g~~l~iftnq  129 (422)
T KOG2134|consen   72 NGGSKIIMFDYDGTLIDTKSGKVFPKG---------------------SMD-WRILFPEVPSKLKTLYQDGIKLFIFTNQ  129 (422)
T ss_pred             CCCcceEEEecCCceeecCCcceeecc---------------------Ccc-ceeeccccchhhhhhccCCeEEEEEecc
Confidence            456677899999999998653211100                     001 222334444445666 477888888876


Q ss_pred             c
Q 040601           83 I   83 (97)
Q Consensus        83 ~   83 (97)
                      .
T Consensus       130 ~  130 (422)
T KOG2134|consen  130 N  130 (422)
T ss_pred             c
Confidence            5

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=82.97  E-value=2.1  Score=30.70  Aligned_cols=38  Identities=5%  Similarity=0.238  Sum_probs=34.3

Q ss_pred             EEEecchHHHHHHHHh---hcceEEEEeCCchHHHHHHHHh
Q 040601           56 LVKLRPYIRKFLKEAS---KMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls---~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      -+.+.||..+|++.++   ..++++|-+.|..-|.+.+++.
T Consensus        69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~  109 (234)
T PF06888_consen   69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEH  109 (234)
T ss_pred             cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHh
Confidence            5678999999999994   4899999999999999999875

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=82.63  E-value=1.3  Score=37.25  Aligned_cols=19  Identities=32%  Similarity=0.468  Sum_probs=15.2

Q ss_pred             CCCCceEEEeCCCeeeeee
Q 040601            4 RQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~   22 (97)
                      +.++..++||+||||+...
T Consensus       593 ~~~~rlI~LDyDGTLlp~~  611 (854)
T PLN02205        593 RTTTRAILLDYDGTLMPQA  611 (854)
T ss_pred             hhcCeEEEEecCCcccCCc
Confidence            4567889999999999543

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=82.20  E-value=0.72  Score=32.14  Aligned_cols=18  Identities=33%  Similarity=0.279  Sum_probs=14.8

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      -+...++|+||||++...
T Consensus         4 ~~~la~FDfDgTLt~~ds   21 (210)
T TIGR01545         4 AKRIIFFDLDGTLHQQDM   21 (210)
T ss_pred             cCcEEEEcCCCCCccCcc
Confidence            356789999999999854

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=82.20  E-value=1.3  Score=30.99  Aligned_cols=15  Identities=40%  Similarity=0.479  Sum_probs=13.3

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++||||||+.+.
T Consensus        11 k~iiFDlDGTL~D~~   25 (238)
T PRK10748         11 SALTFDLDDTLYDNR   25 (238)
T ss_pred             eeEEEcCcccccCCh
Confidence            579999999999984

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=82.18  E-value=3.8  Score=35.02  Aligned_cols=70  Identities=17%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhh--cceEEEEeC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASK--MYEIYLCTT   81 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~--~~ei~i~T~   81 (97)
                      +.++..|+||.||||+--...|.....             .       ....-+..-|++.+.|+.|++  .-.|+|-|-
T Consensus       588 ~a~~RLlfLDyDGTLap~~~~P~~~~~-------------~-------~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSG  647 (934)
T PLN03064        588 QSNNRLLILGFNATLTEPVDTPGRRGD-------------Q-------IKEMELRLHPELKEPLRALCSDPKTTIVVLSG  647 (934)
T ss_pred             hccceEEEEecCceeccCCCCcccccc-------------c-------ccccccCCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            456788999999999976544320000             0       001123355778888888864  467888887


Q ss_pred             CchHHHHHHHHh
Q 040601           82 GIRSYAVMMAKL   93 (97)
Q Consensus        82 ~~~~YA~~v~~~   93 (97)
                      -..+-.+..+..
T Consensus       648 R~~~~Le~~fg~  659 (934)
T PLN03064        648 SDRSVLDENFGE  659 (934)
T ss_pred             CCHHHHHHHhCC
Confidence            777766665543

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=81.28  E-value=3.7  Score=29.30  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=35.7

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+-||++|+...| .++..+++-+-|-+..|.+|.+.|+
T Consensus        87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lg  126 (227)
T KOG1615|consen   87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLG  126 (227)
T ss_pred             CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhC
Confidence            34679999999999 6889999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	97
3ef1_A	442	The Structure Of Fcp1, An Essential Rna Polymerase		2e-04
3ef0_A	372	The Structure Of Fcp1, An Essential Rna Polymerase		3e-04

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 55  FLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           + +K RP + +FL++ S++YE+++ T G ++YA  +AK++D
Sbjct: 80  YYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 120

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 55  FLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           + +K RP + +FL++ S++YE+++ T G ++YA  +AK++D
Sbjct: 72  YYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	97
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	5e-21
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	2e-17
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	1e-09
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	6e-09
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	7e-09

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372

 Score = 84.5 bits (208), Expect = 5e-21
 Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGEL------FLV 57
           ++K+L L++DLD T++HA     +     +          D   F +          + +
Sbjct: 15  QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYI 74

Query: 58  KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           K RP + +FL++ S++YE+++ T G ++YA  +AK++D
Sbjct: 75  KFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 112

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442

 Score = 74.6 bits (182), Expect = 2e-17
 Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 4   RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGEL------FLV 57
           ++K+L L++ LD T++HA     +     +          D   F +          + +
Sbjct: 23  QEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYI 82

Query: 58  KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           K RP + +FL++ S++YE+++ T G ++YA  +AK++D
Sbjct: 83  KFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 120

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 3  YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPY 62
              K+ +V++LD TL+H+         + ++++ +                  V  RP+
Sbjct: 11 QDSDKICVVINLDETLVHS---SFKPVNNADFIIPVE--------IDGVVHQVYVLKRPH 59

Query: 63 IRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
          + +FL+   +++E  L T  +  YA  +A LLD
Sbjct: 60 VDEFLQRMGELFECVLFTASLAKYADPVADLLD 92

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 5   QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIR 64
             K  +V+DLD TL+H+         + ++++ +    +   ++        V  RP++ 
Sbjct: 26  YGKKCVVIDLDETLVHS---SFKPISNADFIVPVEIDGTIHQVY--------VLKRPHVD 74

Query: 65  KFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
           +FL+   +++E  L T  +  YA  +A LLD
Sbjct: 75  EFLQRMGQLFECVLFTASLAKYADPVADLLD 105

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204

 Score = 49.6 bits (119), Expect = 7e-09
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 26/92 (28%)

Query: 4  RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYI 63
           Q+ L LV+ L+  L+H                   S  S    ++          RP  
Sbjct: 31 YQRPLTLVITLEDFLVH-------------------SEWSQKHGWR-------TAKRPGA 64

Query: 64 RKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD 95
            FL   S+ YEI L ++    Y+  +A+ LD
Sbjct: 65 DYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLD 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	99.93
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	99.92
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	99.92
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.9
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.88
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.86
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	98.24
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	98.23
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	98.21
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	98.21
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	98.19
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	98.09
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	98.04
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	98.0
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	97.99
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	97.97
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	97.96
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.93
2o2x_A	218	Hypothetical protein; structural genomics, joint c	97.88
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	97.88
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	97.86
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	97.84
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	97.81
3mn1_A	189	Probable YRBI family phosphatase; structural genom	97.8
3mmz_A	176	Putative HAD family hydrolase; structural genomics	97.79
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	97.77
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	97.72
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	97.71
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	97.68
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	97.66
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	97.63
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	97.62
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	97.61
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	97.6
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	97.55
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	97.54
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	97.49
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	97.36
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	97.32
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	97.32
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	97.29
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	97.26
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	97.22
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	97.22
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	97.21
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	97.2
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	97.17
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	97.15
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	97.14
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	97.11
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	97.1
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	97.04
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	97.02
3dao_A	283	Putative phosphatse; structural genomics, joint ce	96.99
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	96.92
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	96.87
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	96.82
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	96.79
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	96.68
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	96.67
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	96.66
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	96.65
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	96.62
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	96.56
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	96.48
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	96.38
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	96.28
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	96.27
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	96.24
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	96.24
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	96.23
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	96.17
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	96.16
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	96.13
3fvv_A	232	Uncharacterized protein; unknown function, structu	96.11
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	96.11
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	96.1
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	96.09
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	96.04
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	95.95
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	95.7
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	95.66
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	95.66
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	95.62
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	95.52
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	95.5
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	95.48
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	95.46
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	95.2
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	95.03
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	95.0
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	94.91
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	94.91
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	94.85
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	94.84
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	94.8
2hsz_A	243	Novel predicted phosphatase; structural genomics,	94.79
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	94.73
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	94.7
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	94.67
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	94.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.58
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	94.51
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	94.44
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	94.41
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	94.34
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	94.3
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	94.29
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	94.26
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	94.26
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	94.23
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	94.22
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	94.21
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	94.15
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	94.13
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	94.08
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	94.06
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	94.02
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	93.96
2zg6_A	220	Putative uncharacterized protein ST2620, probable	93.95
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	93.92
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	93.9
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	93.89
4gxt_A	385	A conserved functionally unknown protein; structur	93.88
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	93.88
1te2_A	226	Putative phosphatase; structural genomics, phospha	93.83
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	93.7
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	93.65
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	93.64
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	93.6
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	93.59
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	93.49
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	93.47
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	93.46
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	93.45
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	93.45
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	93.44
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	93.34
2hsz_A	243	Novel predicted phosphatase; structural genomics,	93.25
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	93.24
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	93.21
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	93.2
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	93.2
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	93.16
2zg6_A	220	Putative uncharacterized protein ST2620, probable	93.16
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	93.16
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	93.16
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	93.09
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	93.06
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	93.06
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	93.0
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	93.0
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	92.99
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	92.94
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	92.93
3fvv_A	232	Uncharacterized protein; unknown function, structu	92.91
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	92.89
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	92.89
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	92.8
1te2_A	226	Putative phosphatase; structural genomics, phospha	92.77
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	92.76
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	92.69
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	92.68
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	92.66
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	92.55
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	92.55
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	92.51
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	92.49
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	92.4
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	92.39
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	92.39
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	92.38
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	92.37
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	92.32
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	92.3
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	92.3
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	92.16
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	92.13
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	92.12
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	92.09
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	92.08
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	92.05
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	92.0
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	91.99
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	91.94
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	91.91
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	91.88
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	91.87
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	91.49
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	91.37
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	91.28
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	91.19
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	91.13
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	91.12
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	90.48
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	90.34
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	90.22
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	90.01
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	89.46
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	89.61
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	89.59
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	89.55
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	89.29
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	88.76
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	88.55
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	88.49
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	87.59
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	87.19
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	87.05
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	87.02
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	83.97
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	82.68
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	81.11

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=99.93  E-value=5.8e-27  Score=177.89  Aligned_cols=95  Identities=26%  Similarity=0.439  Sum_probs=74.3

Q ss_pred             CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhh-CCCCCCCceeeec------ceEEEEEecchHHHHHHHHhhcc
Q 040601            2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKL-GSSSSDGDLFKMA------GELFLVKLRPYIRKFLKEASKMY   74 (97)
Q Consensus         2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~v~~RP~~~~FL~~ls~~~   74 (97)
                      |++++|++||||||||||||+..|..+.| ..+..++ .+..++...|.+.      ++.+||++|||+++||+.++++|
T Consensus        21 ll~~~Kl~LVLDLDeTLiHs~~~~~~~~~-~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPgl~eFL~~ls~~y   99 (442)
T 3ef1_A           21 LRQEKRLSLIVXLDQTIIHATVDPTVGEW-MSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELY   99 (442)
T ss_dssp             HHHTTCEEEEECCBTTTEEEECCTHHHHH-HTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHTTTE
T ss_pred             HHhcCCeEEEEeeccceeccccccccchh-ccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCCHHHHHHHHhCCc
Confidence            67899999999999999999988754333 1111110 0112333345542      47899999999999999999999


Q ss_pred             eEEEEeCCchHHHHHHHHhhCCC
Q 040601           75 EIYLCTTGIRSYAVMMAKLLDLK   97 (97)
Q Consensus        75 ei~i~T~~~~~YA~~v~~~LDP~   97 (97)
                      ||+|||+|.+.||++|++.|||+
T Consensus       100 EivIfTas~~~YA~~Vl~~LDp~  122 (442)
T 3ef1_A          100 ELHIYTMGTKAYAKEVAKIIDPT  122 (442)
T ss_dssp             EEEEECSSCHHHHHHHHHHHCTT
T ss_pred             EEEEEcCCCHHHHHHHHHHhccC
Confidence            99999999999999999999995

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=99.92  E-value=6.8e-26  Score=169.12  Aligned_cols=95  Identities=27%  Similarity=0.453  Sum_probs=72.6

Q ss_pred             CcCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhh-CCCCCCCceeeec------ceEEEEEecchHHHHHHHHhhcc
Q 040601            2 VYRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKL-GSSSSDGDLFKMA------GELFLVKLRPYIRKFLKEASKMY   74 (97)
Q Consensus         2 ll~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~v~~RP~~~~FL~~ls~~~   74 (97)
                      |++++|++||||||||||||+..|..+.| ..+..+. .+..++...|.+.      .+.++|++|||+++||+.++++|
T Consensus        13 l~~~~k~~LVlDLD~TLvhS~~~~~~~~w-~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~~~y   91 (372)
T 3ef0_A           13 LRQEKRLSLIVDLDQTIIHATVDPTVGEW-MSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELY   91 (372)
T ss_dssp             HHHHTCEEEEECCBTTTEEEECCTHHHHH-HTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHHTTE
T ss_pred             HHhCCCCEEEEcCCCCcccccCcCccchh-hccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHhcCc
Confidence            67889999999999999999987644333 1111110 0011222234432      57899999999999999999999


Q ss_pred             eEEEEeCCchHHHHHHHHhhCCC
Q 040601           75 EIYLCTTGIRSYAVMMAKLLDLK   97 (97)
Q Consensus        75 ei~i~T~~~~~YA~~v~~~LDP~   97 (97)
                      ||+|||++.+.||++|++.|||+
T Consensus        92 eivI~Tas~~~yA~~vl~~LDp~  114 (372)
T 3ef0_A           92 ELHIYTMGTKAYAKEVAKIIDPT  114 (372)
T ss_dssp             EEEEECSSCHHHHHHHHHHHCTT
T ss_pred             EEEEEeCCcHHHHHHHHHHhccC
Confidence            99999999999999999999995

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=99.92  E-value=4.6e-25  Score=153.30  Aligned_cols=67  Identities=30%  Similarity=0.329  Sum_probs=61.2

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCch
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIR   84 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~   84 (97)
                      ++|+|||||||||||||++.+.                          ..+++.+|||+++||+.++++|||+|||++.+
T Consensus        32 ~~~~tLVLDLDeTLvh~~~~~~--------------------------~~~~v~~RPgl~eFL~~l~~~yeivI~Tas~~   85 (204)
T 3qle_A           32 QRPLTLVITLEDFLVHSEWSQK--------------------------HGWRTAKRPGADYFLGYLSQYYEIVLFSSNYM   85 (204)
T ss_dssp             CCSEEEEEECBTTTEEEEEETT--------------------------TEEEEEECTTHHHHHHHHTTTEEEEEECSSCH
T ss_pred             CCCeEEEEeccccEEeeecccc--------------------------CceeEEeCCCHHHHHHHHHhCCEEEEEcCCcH
Confidence            6789999999999999987531                          23589999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCC
Q 040601           85 SYAVMMAKLLDLK   97 (97)
Q Consensus        85 ~YA~~v~~~LDP~   97 (97)
                      .||++|++.|||+
T Consensus        86 ~ya~~vl~~LDp~   98 (204)
T 3qle_A           86 MYSDKIAEKLDPI   98 (204)
T ss_dssp             HHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999999994

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.90  E-value=6.1e-24  Score=144.39  Aligned_cols=81  Identities=26%  Similarity=0.352  Sum_probs=64.8

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeec--ceEEEEEecchHHHHHHHHhhcceEEEEeC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMA--GELFLVKLRPYIRKFLKEASKMYEIYLCTT   81 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~   81 (97)
                      .++|++||||||||||||+..+..+..    +         .......  ...+++++|||+++||+++++.|+++|||+
T Consensus        12 ~~~k~~LVLDLD~TLvhs~~~~~~~~d----~---------~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~~~i~I~T~   78 (181)
T 2ght_A           12 DSDKICVVINLDETLVHSSFKPVNNAD----F---------IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTA   78 (181)
T ss_dssp             GTTSCEEEECCBTTTEEEESSCCSSCS----E---------EEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECS
T ss_pred             cCCCeEEEECCCCCeECCcccCCCCcc----c---------eeeeeeCCeeEEEEEEeCCCHHHHHHHHHhCCCEEEEcC
Confidence            468999999999999999876531110    0         0111122  246899999999999999999999999999


Q ss_pred             CchHHHHHHHHhhCCC
Q 040601           82 GIRSYAVMMAKLLDLK   97 (97)
Q Consensus        82 ~~~~YA~~v~~~LDP~   97 (97)
                      +.+.||+++++.|||+
T Consensus        79 ~~~~~a~~vl~~ld~~   94 (181)
T 2ght_A           79 SLAKYADPVADLLDKW   94 (181)
T ss_dssp             SCHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHCCC
Confidence            9999999999999984

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.88  E-value=3.2e-23  Score=142.58  Aligned_cols=83  Identities=28%  Similarity=0.306  Sum_probs=64.7

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      .++|++||||||||||||++.+.. ..   ++..       ...+......+++.+|||+++||+++++.|+++|||++.
T Consensus        25 ~~~k~~LVLDLD~TLvhs~~~~~~-~~---d~~~-------~~~~~g~~~~~~v~~RPgv~efL~~l~~~~~i~I~Tss~   93 (195)
T 2hhl_A           25 DYGKKCVVIDLDETLVHSSFKPIS-NA---DFIV-------PVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASL   93 (195)
T ss_dssp             GTTCCEEEECCBTTTEEEESSCCT-TC---SEEE-------EEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSC
T ss_pred             cCCCeEEEEccccceEcccccCCC-Cc---ccee-------eeecCCceeeEEEEeCcCHHHHHHHHHcCCeEEEEcCCC
Confidence            467999999999999999876531 11   0000       011111134689999999999999999899999999999


Q ss_pred             hHHHHHHHHhhCCC
Q 040601           84 RSYAVMMAKLLDLK   97 (97)
Q Consensus        84 ~~YA~~v~~~LDP~   97 (97)
                      +.||+++++.|||.
T Consensus        94 ~~~a~~vl~~ld~~  107 (195)
T 2hhl_A           94 AKYADPVADLLDRW  107 (195)
T ss_dssp             HHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhCCc
Confidence            99999999999984

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.86  E-value=1.5e-22  Score=148.59  Aligned_cols=67  Identities=28%  Similarity=0.386  Sum_probs=59.1

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      +++|++|||||||||||+.....  .                         .++.+|||+++||+.++++|||+|||++.
T Consensus       137 ~~~k~tLVLDLDeTLvh~~~~~~--~-------------------------~~~~~RP~l~eFL~~l~~~yeivIfTas~  189 (320)
T 3shq_A          137 REGKKLLVLDIDYTLFDHRSPAE--T-------------------------GTELMRPYLHEFLTSAYEDYDIVIWSATS  189 (320)
T ss_dssp             CTTCEEEEECCBTTTBCSSSCCS--S-------------------------HHHHBCTTHHHHHHHHHHHEEEEEECSSC
T ss_pred             cCCCcEEEEeccccEEcccccCC--C-------------------------cceEeCCCHHHHHHHHHhCCEEEEEcCCc
Confidence            46799999999999999975321  1                         24679999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCC
Q 040601           84 RSYAVMMAKLLDLK   97 (97)
Q Consensus        84 ~~YA~~v~~~LDP~   97 (97)
                      +.||++|++.|||.
T Consensus       190 ~~ya~~vld~Ld~~  203 (320)
T 3shq_A          190 MRWIEEKMRLLGVA  203 (320)
T ss_dssp             HHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999984

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=98.24  E-value=2.7e-06  Score=56.20  Aligned_cols=40  Identities=20%  Similarity=0.082  Sum_probs=34.9

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCc-hHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGI-RSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~-~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+.+. +.+.++|.|++. +.+++.+++.++
T Consensus        66 ~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~g  107 (187)
T 2wm8_A           66 DVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFD  107 (187)
T ss_dssp             EECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTT
T ss_pred             ccCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcC
Confidence            4568999999999995 579999999999 799999998764

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=98.23  E-value=2.4e-06  Score=57.66  Aligned_cols=65  Identities=11%  Similarity=0.002  Sum_probs=47.7

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      ++.+.+++|+||||+......  ...                    .    .+...||+.++|+.|. +.+.++|.|++.
T Consensus        23 ~~~k~v~~D~DGTL~~~~~~~--~~~--------------------~----~~~~~pg~~e~L~~L~~~G~~~~ivTn~~   76 (211)
T 2gmw_A           23 KSVPAIFLDRDGTINVDHGYV--HEI--------------------D----NFEFIDGVIDAMRELKKMGFALVVVTNQS   76 (211)
T ss_dssp             -CBCEEEECSBTTTBCCCSSC--CSG--------------------G----GCCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred             hcCCEEEEcCCCCeECCCCcc--cCc--------------------c----cCcCCcCHHHHHHHHHHCCCeEEEEECcC
Confidence            345689999999999764211  000                    0    1336799999999995 579999999999


Q ss_pred             ---------------hHHHHHHHHhhC
Q 040601           84 ---------------RSYAVMMAKLLD   95 (97)
Q Consensus        84 ---------------~~YA~~v~~~LD   95 (97)
                                     ..+++.+++.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~g  103 (211)
T 2gmw_A           77 GIARGKFTEAQFETLTEWMDWSLADRD  103 (211)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence                           588888887653

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=98.21  E-value=1.9e-06  Score=56.08  Aligned_cols=63  Identities=14%  Similarity=0.044  Sum_probs=45.8

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch--
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR--   84 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~--   84 (97)
                      +.+++|+||||+.....- ....               .         .+...||+.++|+.|. +.+.++|.|++..  
T Consensus         2 k~v~~D~DGtL~~~~~~~-~~~~---------------~---------~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~   56 (179)
T 3l8h_A            2 KLIILDRDGVVNQDSDAF-VKSP---------------D---------EWIALPGSLQAIARLTQADWTVVLATNQSGLA   56 (179)
T ss_dssp             CEEEECSBTTTBCCCTTC-CCSG---------------G---------GCCBCTTHHHHHHHHHHTTCEEEEEEECTTTT
T ss_pred             CEEEEcCCCccccCCCcc-CCCH---------------H---------HceECcCHHHHHHHHHHCCCEEEEEECCCccc
Confidence            568999999999764210 0110               0         1347899999999995 5699999999987  


Q ss_pred             -------------HHHHHHHHhhC
Q 040601           85 -------------SYAVMMAKLLD   95 (97)
Q Consensus        85 -------------~YA~~v~~~LD   95 (97)
                                   +++..+++.+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~l~~~g   80 (179)
T 3l8h_A           57 RGLFDTATLNAIHDKMHRALAQMG   80 (179)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcCCHHHHHHHHHHHHHHHHhCC
Confidence                         67777776653

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=98.21  E-value=4e-06  Score=53.88  Aligned_cols=65  Identities=11%  Similarity=-0.052  Sum_probs=49.8

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      .+.+++|+||||+.+...  .+..                      ....-...|+..++|+.+. +.+.++|.|++...
T Consensus         9 ~k~v~~DlDGTL~~~~~~--~~~~----------------------~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~   64 (162)
T 2p9j_A            9 LKLLIMDIDGVLTDGKLY--YTEH----------------------GETIKVFNVLDGIGIKLLQKMGITLAVISGRDSA   64 (162)
T ss_dssp             CCEEEECCTTTTSCSEEE--EETT----------------------EEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCH
T ss_pred             eeEEEEecCcceECCcee--ecCC----------------------CceeeeecccHHHHHHHHHHCCCEEEEEeCCCcH
Confidence            467899999999976431  1111                      1224456799999999995 56999999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      +++.+++.+.
T Consensus        65 ~~~~~l~~~g   74 (162)
T 2p9j_A           65 PLITRLKELG   74 (162)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=98.19  E-value=3e-06  Score=55.94  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=48.5

Q ss_pred             CCCceEEEeCCCeeeeeeccCc-cchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDI-LASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      ++.+.+++|+|+||+......- ....                        -.+...||+.++|+.|. +.+.++|.|++
T Consensus        12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~------------------------~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~   67 (176)
T 2fpr_A           12 SSQKYLFIDRDGTLISEPPSDFQVDRF------------------------DKLAFEPGVIPQLLKLQKAGYKLVMITNQ   67 (176)
T ss_dssp             -CCEEEEECSBTTTBCCC--CCCCCSG------------------------GGCCBCTTHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CcCcEEEEeCCCCeEcCCCCCcCcCCH------------------------HHCcCCccHHHHHHHHHHCCCEEEEEECC
Confidence            4678899999999997742100 0000                        01347899999999996 56999999999


Q ss_pred             ---------------chHHHHHHHHhhC
Q 040601           83 ---------------IRSYAVMMAKLLD   95 (97)
Q Consensus        83 ---------------~~~YA~~v~~~LD   95 (97)
                                     .+.+++.+++.+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g   95 (176)
T 2fpr_A           68 DGLGTQSFPQADFDGPHNLMMQIFTSQG   95 (176)
T ss_dssp             TTTTBTTBCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccchHhhhhhHHHHHHHHHHcC
Confidence                           6888888887654

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=98.09  E-value=5.6e-05  Score=51.59  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+||+.++|+.+. ..+.++|.|++.+.+++.+++.+.
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~g  182 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG  182 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence            78999999999995 579999999999999999998764

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=98.04  E-value=7.7e-06  Score=54.12  Aligned_cols=69  Identities=13%  Similarity=0.110  Sum_probs=48.0

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch-
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR-   84 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~-   84 (97)
                      -..+++|+|+||+...... ....   +...          +      -.+...||+.++|+.|. +.+.++|.|++.. 
T Consensus         3 ik~vifD~DgtL~~~~~~~-y~~~---~~~~----------~------~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~   62 (189)
T 3ib6_A            3 LTHVIWDMGETLNTVPNTR-YDHH---PLDT----------Y------PEVVLRKNAKETLEKVKQLGFKQAILSNTATS   62 (189)
T ss_dssp             CCEEEECTBTTTBCCCTTS-SCSS---CGGG----------C------TTCCBCTTHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             ceEEEEcCCCceeeccchh-hhhH---HHhc----------c------CCceeCcCHHHHHHHHHHCCCEEEEEECCCcc
Confidence            3579999999998843211 0000   0000          0      01458899999999995 5699999999987 


Q ss_pred             --HHHHHHHHhhC
Q 040601           85 --SYAVMMAKLLD   95 (97)
Q Consensus        85 --~YA~~v~~~LD   95 (97)
                        .++..+++.+.
T Consensus        63 ~~~~~~~~l~~~g   75 (189)
T 3ib6_A           63 DTEVIKRVLTNFG   75 (189)
T ss_dssp             CHHHHHHHHHHTT
T ss_pred             chHHHHHHHHhcC
Confidence              88998887654

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=98.00  E-value=2e-05  Score=51.88  Aligned_cols=65  Identities=8%  Similarity=-0.120  Sum_probs=49.4

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      -+.+++|+||||+.+...  ...                      .....-.+.|...+.|+.+. +.+.++|.|+....
T Consensus         8 ik~i~~DlDGTL~~~~~~--~~~----------------------~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~   63 (180)
T 1k1e_A            8 IKFVITDVDGVLTDGQLH--YDA----------------------NGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSP   63 (180)
T ss_dssp             CCEEEEECTTTTSCSEEE--EET----------------------TEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCH
T ss_pred             CeEEEEeCCCCcCCCCee--ecc----------------------CcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcH
Confidence            367899999999976431  111                      11234456788889999994 67999999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      .+..+++.+.
T Consensus        64 ~~~~~~~~lg   73 (180)
T 1k1e_A           64 ILRRRIADLG   73 (180)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=97.99  E-value=3.3e-06  Score=52.09  Aligned_cols=36  Identities=11%  Similarity=0.013  Sum_probs=30.2

Q ss_pred             ecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ..||+.++|+.+. +.+.++|.|++...+++.+++.+
T Consensus        19 ~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~   55 (137)
T 2pr7_A           19 DQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIREL   55 (137)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHH
T ss_pred             cCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHC
Confidence            4689999999995 46999999999999888877655

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=97.97  E-value=1.4e-05  Score=53.35  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=34.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. +.+.++|.|++.+.+++.+++.+.
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~g  124 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLN  124 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcC
Confidence            568999999999995 579999999999999999998764

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=97.96  E-value=3.7e-05  Score=50.48  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             EEEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           55 FLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        55 ~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ......||+.++|+.+. +.+.++|.|++...+++.+++.+.
T Consensus        67 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~  108 (205)
T 3m9l_A           67 QGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIG  108 (205)
T ss_dssp             EEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred             hcCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcC
Confidence            45778999999999996 569999999999999999988753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.93  E-value=1.5e-05  Score=59.43  Aligned_cols=70  Identities=20%  Similarity=0.226  Sum_probs=48.1

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      ..+.+.+++|+||||+.+.........                      ..-+....||+.++|+.|. +.|.++|.|++
T Consensus        55 ~~~~k~v~fD~DGTL~~~~~~~~~~~~----------------------~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~  112 (416)
T 3zvl_A           55 KPQGKVAAFDLDGTLITTRSGKVFPTS----------------------PSDWRILYPEIPKKLQELAAEGYKLVIFTNQ  112 (416)
T ss_dssp             CCCSSEEEECSBTTTEECSSCSSSCSS----------------------TTCCEESCTTHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CCCCeEEEEeCCCCccccCCCccCCCC----------------------HHHhhhhcccHHHHHHHHHHCCCeEEEEeCC
Confidence            345678999999999977431110000                      0013347899999999995 57999999996


Q ss_pred             c------------hHHHHHHHHhhC
Q 040601           83 I------------RSYAVMMAKLLD   95 (97)
Q Consensus        83 ~------------~~YA~~v~~~LD   95 (97)
                      .            ..+++.+++.+.
T Consensus       113 ~gi~~g~~~~~~~~~~~~~~l~~lg  137 (416)
T 3zvl_A          113 MGIGRGKLPAEVFKGKVEAVLEKLG  137 (416)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHcC
Confidence            6            334777777654

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=97.88  E-value=2.2e-05  Score=52.89  Aligned_cols=64  Identities=19%  Similarity=0.128  Sum_probs=47.3

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      +....+++|+||||+.......  ..                    .    .....||+.++|+.+. +.+.++|.|++.
T Consensus        29 ~~~k~i~~D~DGtl~~~~~y~~--~~--------------------~----~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~   82 (218)
T 2o2x_A           29 PHLPALFLDRDGTINVDTDYPS--DP--------------------A----EIVLRPQMLPAIATANRAGIPVVVVTNQS   82 (218)
T ss_dssp             SSCCCEEECSBTTTBCCCSCTT--CG--------------------G----GCCBCGGGHHHHHHHHHHTCCEEEEEECH
T ss_pred             hcCCEEEEeCCCCcCCCCcccC--Cc--------------------c----cCeECcCHHHHHHHHHHCCCEEEEEcCcC
Confidence            3456789999999987632110  00                    0    1236899999999995 679999999999


Q ss_pred             h---------------HHHHHHHHhh
Q 040601           84 R---------------SYAVMMAKLL   94 (97)
Q Consensus        84 ~---------------~YA~~v~~~L   94 (97)
                      .               ..+..+++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (218)
T 2o2x_A           83 GIARGYFGWSAFAAVNGRVLELLREE  108 (218)
T ss_dssp             HHHTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcccccHHHHHHHHHHHHHHHHHc
Confidence            8               7888887764

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=97.88  E-value=2.1e-05  Score=56.80  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. +.+.++|.|++...+++.+++.+.
T Consensus       178 ~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lg  217 (317)
T 4eze_A          178 MTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQ  217 (317)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHT
T ss_pred             CEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcC
Confidence            468999999999995 569999999999999999998754

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=97.86  E-value=2.2e-05  Score=55.38  Aligned_cols=81  Identities=23%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      ..++..+|+||||||+.+...-   ..  ..  ......  ...+.--...--....||+.++|+.+ .+.+.++|.|+.
T Consensus        56 ~~~~kavifDlDGTLld~~~~~---~~--~~--~~~~~~--~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr  126 (258)
T 2i33_A           56 TEKKPAIVLDLDETVLDNSPHQ---AM--SV--KTGKGY--PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNR  126 (258)
T ss_dssp             CSSEEEEEECSBTTTEECHHHH---HH--HH--HHSCCT--TTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCCCEEEEeCcccCcCCHHHH---HH--HH--hcccch--HHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCC
Confidence            4567899999999999884210   00  00  000000  00000000000135779999999999 567999999999


Q ss_pred             ch---HHHHHHHHh
Q 040601           83 IR---SYAVMMAKL   93 (97)
Q Consensus        83 ~~---~YA~~v~~~   93 (97)
                      ..   ..+...++.
T Consensus       127 ~~~~~~~~~~~L~~  140 (258)
T 2i33_A          127 KTNQLDATIKNLER  140 (258)
T ss_dssp             EGGGHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHH
Confidence            84   444444443

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=97.84  E-value=3.1e-06  Score=56.05  Aligned_cols=38  Identities=13%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             EEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+.+  .+.++|.|++.+.+++.+++.+
T Consensus        72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~  111 (193)
T 2i7d_A           72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKY  111 (193)
T ss_dssp             CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHH
T ss_pred             CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHh
Confidence            4578999999999975  6999999999998888777654

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=97.81  E-value=6.7e-05  Score=49.84  Aligned_cols=40  Identities=5%  Similarity=-0.107  Sum_probs=35.0

Q ss_pred             EEEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .....||+.++|+.+.+ .+.++|.|++...+++.+++.+.
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~g  141 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKN  141 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCC
Confidence            45689999999999964 69999999999999999988753

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=97.80  E-value=3.5e-05  Score=51.30  Aligned_cols=65  Identities=15%  Similarity=-0.016  Sum_probs=45.7

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      -..+++|+||||+.+...  ....              .      ........+++.  +|+.+. ..+.++|.|++.+.
T Consensus        19 ik~vifD~DGTL~d~~~~--~~~~--------------~------~~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~   74 (189)
T 3mn1_A           19 IKLAVFDVDGVLTDGRLY--FMED--------------G------SEIKTFNTLDGQ--GIKMLIASGVTTAIISGRKTA   74 (189)
T ss_dssp             CCEEEECSTTTTSCSEEE--EETT--------------S------CEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCH
T ss_pred             CCEEEEcCCCCcCCccEe--eccC--------------C------cEeeeeccccHH--HHHHHHHCCCEEEEEECcChH
Confidence            467899999999987431  1111              0      011123455555  888885 57999999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      .++.+++.+.
T Consensus        75 ~~~~~~~~lg   84 (189)
T 3mn1_A           75 IVERRAKSLG   84 (189)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=97.79  E-value=4.1e-05  Score=50.40  Aligned_cols=65  Identities=18%  Similarity=0.138  Sum_probs=44.4

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~   85 (97)
                      -..+++|+||||+.....  ....              ..      .......+++.  +|+.+ ...+.++|.|++.+.
T Consensus        12 ~k~vifD~DGTL~d~~~~--~~~~--------------~~------~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~   67 (176)
T 3mmz_A           12 IDAVVLDFDGTQTDDRVL--IDSD--------------GR------EFVSVHRGDGL--GIAALRKSGLTMLILSTEQNP   67 (176)
T ss_dssp             CSEEEECCTTTTSCSCCE--ECTT--------------CC------EEEEEEHHHHH--HHHHHHHTTCEEEEEESSCCH
T ss_pred             CCEEEEeCCCCcCcCCEe--ecCC--------------cc------HhHhcccccHH--HHHHHHHCCCeEEEEECcChH
Confidence            358999999999983211  1110              00      01122344555  88888 467999999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      +++.+++.+.
T Consensus        68 ~~~~~~~~lg   77 (176)
T 3mmz_A           68 VVAARARKLK   77 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999998765

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=97.77  E-value=4.7e-06  Score=54.95  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=34.7

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. +.+.++|.|++...+++.+++.+.
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~g  113 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLH  113 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHT
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcC
Confidence            568999999999996 459999999999999999988764

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=97.72  E-value=2e-05  Score=51.71  Aligned_cols=38  Identities=8%  Similarity=0.092  Sum_probs=34.0

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHh
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      .+...||+.++|+.+.+.+.++|.|++...+++.+++.
T Consensus        87 ~~~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~  124 (211)
T 2i6x_A           87 LEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSP  124 (211)
T ss_dssp             EEEECHHHHHHHHHHTTTSEEEEEECCCHHHHHHHTST
T ss_pred             hcccChHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHhh
Confidence            45789999999999977999999999999999888765

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=97.71  E-value=9.3e-05  Score=47.44  Aligned_cols=66  Identities=14%  Similarity=-0.038  Sum_probs=45.1

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      +-..+++|+||||+.+...-  ...              ..      ...-...+++.  .|+.+. ..+.++|.|++.+
T Consensus         3 ~ik~vifD~DGTL~~~~~~~--~~~--------------~~------~~~~~~~~~~~--~l~~l~~~g~~~~i~T~~~~   58 (164)
T 3e8m_A            3 EIKLILTDIDGVWTDGGMFY--DQT--------------GN------EWKKFNTSDSA--GIFWAHNKGIPVGILTGEKT   58 (164)
T ss_dssp             CCCEEEECSTTTTSSSEEEE--CSS--------------SC------EEEEEEGGGHH--HHHHHHHTTCCEEEECSSCC
T ss_pred             cceEEEEcCCCceEcCcEEE--cCC--------------Cc------EEEEecCChHH--HHHHHHHCCCEEEEEeCCCh
Confidence            34679999999999864211  000              00      01122345554  788885 5799999999999


Q ss_pred             HHHHHHHHhhC
Q 040601           85 SYAVMMAKLLD   95 (97)
Q Consensus        85 ~YA~~v~~~LD   95 (97)
                      ..++.+++.+.
T Consensus        59 ~~~~~~~~~~g   69 (164)
T 3e8m_A           59 EIVRRRAEKLK   69 (164)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999998764

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=97.68  E-value=6.6e-05  Score=51.28  Aligned_cols=65  Identities=15%  Similarity=0.121  Sum_probs=45.9

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~   85 (97)
                      -..+++|+||||+.+...  ....              ..      .......+++.  +|+.| ...+.++|.|+..+.
T Consensus        49 ik~viFDlDGTL~Ds~~~--~~~~--------------~~------~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~  104 (211)
T 3ij5_A           49 IRLLICDVDGVMSDGLIY--MGNQ--------------GE------ELKAFNVRDGY--GIRCLITSDIDVAIITGRRAK  104 (211)
T ss_dssp             CSEEEECCTTTTSSSEEE--EETT--------------SC------EEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCH
T ss_pred             CCEEEEeCCCCEECCHHH--Hhhh--------------hH------HHHHhccchHH--HHHHHHHCCCEEEEEeCCCHH
Confidence            468999999999988531  1111              00      11123345555  88888 467999999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      .|+.+++.+.
T Consensus       105 ~~~~~l~~lg  114 (211)
T 3ij5_A          105 LLEDRANTLG  114 (211)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=97.66  E-value=2.1e-05  Score=52.81  Aligned_cols=35  Identities=14%  Similarity=0.040  Sum_probs=29.4

Q ss_pred             EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHH
Q 040601           58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAK   92 (97)
Q Consensus        58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~   92 (97)
                      ...||+.++|+.|. +.+.++|.|+..+..+..+.+
T Consensus        36 ~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~~   71 (196)
T 2oda_A           36 QLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAA   71 (196)
T ss_dssp             SBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHT
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhcC
Confidence            46799999999995 679999999999988865543

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=97.62  E-value=0.0002  Score=47.18  Aligned_cols=38  Identities=8%  Similarity=-0.015  Sum_probs=33.4

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....||+.++|+.+.+ .+.++|.|++...+++.+++.+
T Consensus        95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~  133 (230)
T 3um9_A           95 LTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNS  133 (230)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHC
Confidence            4578999999999964 5999999999999999988764

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=97.61  E-value=2.2e-05  Score=52.51  Aligned_cols=37  Identities=16%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             EecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           58 KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        58 ~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ...||+.++|+.+.+.+.++|.|++.+.+++.+++.|
T Consensus       112 ~~~~~~~~~l~~l~~~~~~~i~Sn~~~~~~~~~~~~l  148 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNA  148 (229)
T ss_dssp             CCCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHT
T ss_pred             hccHHHHHHHHHHHhcCcEEEEECCChHHHHHHHhhh
Confidence            3679999999999766999999999999999777544

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=97.60  E-value=0.00012  Score=52.21  Aligned_cols=66  Identities=23%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             CCCCceEEEeCCCeeeeeeccC--------ccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDID--------ILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMY   74 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~   74 (97)
                      ..+|..+|||+||||...+..-        .........+..             .+   .....||+.+||+.+ +..+
T Consensus        55 ~~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~-------------~~---~~~~~pG~~ell~~L~~~G~  118 (262)
T 3ocu_A           55 KGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVD-------------AR---QSRAVPGAVEFNNYVNSHNG  118 (262)
T ss_dssp             TTCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHH-------------HT---CCEECTTHHHHHHHHHHTTE
T ss_pred             CCCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHH-------------cC---CCCCCccHHHHHHHHHHCCC
Confidence            3567899999999999986310        000000000000             01   356889999999999 5789


Q ss_pred             eEEEEeCCchH
Q 040601           75 EIYLCTTGIRS   85 (97)
Q Consensus        75 ei~i~T~~~~~   85 (97)
                      +++|.|+....
T Consensus       119 ki~ivTgR~~~  129 (262)
T 3ocu_A          119 KVFYVTNRKDS  129 (262)
T ss_dssp             EEEEEEEEETT
T ss_pred             eEEEEeCCCcc
Confidence            99999987653

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=97.55  E-value=0.00014  Score=51.78  Aligned_cols=69  Identities=17%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCce---eeecceEEEEEecchHHHHHHHH-hhcceEEEEeC
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDL---FKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTT   81 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~   81 (97)
                      +|+.+|||+||||+..+..-  ...     ......+. ...   +...+   .....||+.+||+.+ +..++++|.|+
T Consensus        57 ~~~avVfDIDgTlldn~~y~--~~~-----~~~~~~f~-~~~w~~wv~~g---~~~~~pg~~ell~~L~~~G~~i~ivTg  125 (260)
T 3pct_A           57 KKKAVVVDLDETMIDNSAYA--GWQ-----VQSGQGFS-PKTWTKWVDAR---QSAAIPGAVEFSNYVNANGGTMFFVSN  125 (260)
T ss_dssp             -CEEEEECCBTTTEECHHHH--HHH-----HHHTCCCC-HHHHHHHHHTT---CCEECTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEECCccCcCChhHH--Hhh-----cccCCCCC-HHHHHHHHHcC---CCCCCccHHHHHHHHHHCCCeEEEEeC
Confidence            45699999999999986321  000     00000000 000   00001   256889999999999 57899999998


Q ss_pred             CchH
Q 040601           82 GIRS   85 (97)
Q Consensus        82 ~~~~   85 (97)
                      ....
T Consensus       126 R~~~  129 (260)
T 3pct_A          126 RRDD  129 (260)
T ss_dssp             EETT
T ss_pred             CCcc
Confidence            7654

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=97.54  E-value=1.7e-05  Score=58.63  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. ..+.++|.|++...+++.+++.+.
T Consensus       255 ~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lg  294 (415)
T 3p96_A          255 LELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELM  294 (415)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             CccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcC
Confidence            478999999999995 569999999999999999998764

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=97.49  E-value=1.8e-05  Score=53.83  Aligned_cols=35  Identities=11%  Similarity=0.126  Sum_probs=28.3

Q ss_pred             ecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHh
Q 040601           59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      ..||+.++|+.+. +.+.++|.|++.+..++.+++.
T Consensus        89 ~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l~~  124 (211)
T 2b82_A           89 PKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKT  124 (211)
T ss_dssp             ECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHH
T ss_pred             CcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH
Confidence            5789999999995 6799999999987766555543

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=97.36  E-value=4.4e-05  Score=49.77  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHH
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMM   90 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v   90 (97)
                      .+...||+.++|+.+. +.+.++|.|++...+++.+
T Consensus        89 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~  124 (206)
T 2b0c_A           89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFW  124 (206)
T ss_dssp             EEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCC
T ss_pred             hcccCccHHHHHHHHHHCCCeEEEEECCChHHHHHH
Confidence            4678999999999996 6799999999988775443

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=97.32  E-value=0.00024  Score=46.26  Aligned_cols=58  Identities=12%  Similarity=0.099  Sum_probs=39.2

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~   85 (97)
                      .+.+++|+||||+..... .++                             ..-|++.+.|+.+ .+.+.++|+|.-+..
T Consensus         3 ~k~i~~DlDGTL~~~~~~-~i~-----------------------------~~~~~~~~al~~l~~~G~~iii~TgR~~~   52 (142)
T 2obb_A            3 AMTIAVDFDGTIVEHRYP-RIG-----------------------------EEIPFAVETLKLLQQEKHRLILWSVREGE   52 (142)
T ss_dssp             CCEEEECCBTTTBCSCTT-SCC-----------------------------CBCTTHHHHHHHHHHTTCEEEECCSCCHH
T ss_pred             CeEEEEECcCCCCCCCCc-ccc-----------------------------ccCHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence            457899999999985321 100                             1347888888888 467889999887655


Q ss_pred             HHHHHHHhh
Q 040601           86 YAVMMAKLL   94 (97)
Q Consensus        86 YA~~v~~~L   94 (97)
                      ....+.+.+
T Consensus        53 ~~~~~~~~l   61 (142)
T 2obb_A           53 LLDEAIEWC   61 (142)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            555555444

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=97.32  E-value=6.4e-05  Score=50.72  Aligned_cols=30  Identities=20%  Similarity=-0.009  Sum_probs=25.8

Q ss_pred             HHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           66 FLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        66 FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      -|+.+ ...+.++|.|++.+..++.+++.+.
T Consensus        60 ~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lg   90 (195)
T 3n07_A           60 GVKALMNAGIEIAIITGRRSQIVENRMKALG   90 (195)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCEEEEEECcCHHHHHHHHHHcC
Confidence            47787 4679999999999999999998764

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=97.29  E-value=0.00055  Score=46.39  Aligned_cols=15  Identities=20%  Similarity=0.277  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         4 kli~~DlDGTLl~~~   18 (231)
T 1wr8_A            4 KAISIDIDGTITYPN   18 (231)
T ss_dssp             CEEEEESTTTTBCTT
T ss_pred             eEEEEECCCCCCCCC
Confidence            578999999999874

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=97.26  E-value=0.00083  Score=44.31  Aligned_cols=66  Identities=20%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      +...+++|+||||+++...  ....              ..      .......+++  .+|+.+. ..+.++|.|++..
T Consensus        25 ~ik~vifD~DGTL~~~~~~--~~~~--------------~~------~~~~~~~~d~--~~l~~L~~~g~~v~ivT~~~~   80 (188)
T 2r8e_A           25 NIRLLILDVDGVLSDGLIY--MGNN--------------GE------ELKAFNVRDG--YGIRCALTSDIEVAIITGRKA   80 (188)
T ss_dssp             TCSEEEECCCCCCBCSEEE--EETT--------------SC------EEEEEEHHHH--HHHHHHHTTTCEEEEECSSCC
T ss_pred             cCCEEEEeCCCCcCCCCEE--ecCC--------------Cc------EEEEeecccH--HHHHHHHHCCCeEEEEeCCCh
Confidence            4468999999999975421  0100              00      0011223333  3888885 5699999999999


Q ss_pred             HHHHHHHHhhC
Q 040601           85 SYAVMMAKLLD   95 (97)
Q Consensus        85 ~YA~~v~~~LD   95 (97)
                      ..++.+++.+.
T Consensus        81 ~~~~~~l~~lg   91 (188)
T 2r8e_A           81 KLVEDRCATLG   91 (188)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHcC
Confidence            99999998764

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=97.22  E-value=0.00065  Score=49.89  Aligned_cols=54  Identities=20%  Similarity=0.196  Sum_probs=42.2

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCc
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGI   83 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~   83 (97)
                      ++++.+++|+||||++...                                   .-||+.++|+.+ +....+++.||++
T Consensus        11 ~~~~~~l~D~DGvl~~g~~-----------------------------------~~p~a~~~l~~l~~~g~~~~~vTNn~   55 (352)
T 3kc2_A           11 SKKIAFAFDIDGVLFRGKK-----------------------------------PIAGASDALKLLNRNKIPYILLTNGG   55 (352)
T ss_dssp             -CCEEEEECCBTTTEETTE-----------------------------------ECTTHHHHHHHHHHTTCCEEEECSCC
T ss_pred             ccCCEEEEECCCeeEcCCe-----------------------------------eCcCHHHHHHHHHHCCCEEEEEeCCC
Confidence            3678899999999988531                                   238999999999 4678999999875


Q ss_pred             ----hHHHHHHHHh
Q 040601           84 ----RSYAVMMAKL   93 (97)
Q Consensus        84 ----~~YA~~v~~~   93 (97)
                          +++|+.+.+.
T Consensus        56 ~~~~~~~~~~l~~~   69 (352)
T 3kc2_A           56 GFSERARTEFISSK   69 (352)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHh
Confidence                6788777643

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=97.22  E-value=0.00057  Score=42.90  Aligned_cols=49  Identities=31%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCch
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIR   84 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~   84 (97)
                      +.+++||||||+.+.... .. .                          +...|+..+.|+.+ .+.+.+++.|....
T Consensus         2 k~i~~DlDGTL~~~~~~~-~~-~--------------------------~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~   51 (126)
T 1xpj_A            2 KKLIVDLDGTLTQANTSD-YR-N--------------------------VLPRLDVIEQLREYHQLGFEIVISTARNM   51 (126)
T ss_dssp             CEEEECSTTTTBCCCCSC-GG-G--------------------------CCBCHHHHHHHHHHHHTTCEEEEEECTTT
T ss_pred             CEEEEecCCCCCCCCCCc-cc-c--------------------------CCCCHHHHHHHHHHHhCCCeEEEEeCCCh
Confidence            368999999999864321 00 0                          12457777888887 46688888886654

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=97.21  E-value=0.00041  Score=47.33  Aligned_cols=54  Identities=13%  Similarity=0.143  Sum_probs=36.4

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchHH
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSY   86 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~Y   86 (97)
                      +.+++||||||+.+..  .                                +.|...+.|+++. +...+++.|......
T Consensus         6 kli~~DlDGTLl~~~~--~--------------------------------i~~~~~~~l~~l~~~g~~~~i~TGr~~~~   51 (227)
T 1l6r_A            6 RLAAIDVDGNLTDRDR--L--------------------------------ISTKAIESIRSAEKKGLTVSLLSGNVIPV   51 (227)
T ss_dssp             CEEEEEHHHHSBCTTS--C--------------------------------BCHHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             EEEEEECCCCCcCCCC--c--------------------------------CCHHHHHHHHHHHHCCCEEEEECCCCcHH
Confidence            5789999999997632  1                                2355666666663 456777777777766


Q ss_pred             HHHHHHhhC
Q 040601           87 AVMMAKLLD   95 (97)
Q Consensus        87 A~~v~~~LD   95 (97)
                      +..+++.+.
T Consensus        52 ~~~~~~~l~   60 (227)
T 1l6r_A           52 VYALKIFLG   60 (227)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            666665543

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=97.20  E-value=0.00081  Score=46.23  Aligned_cols=17  Identities=29%  Similarity=0.444  Sum_probs=6.7

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         5 ~kli~~DlDGTLl~~~~   21 (279)
T 3mpo_A            5 IKLIAIDIDGTLLNEKN   21 (279)
T ss_dssp             CCEEEECC---------
T ss_pred             eEEEEEcCcCCCCCCCC
Confidence            46799999999998754

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=97.17  E-value=0.00057  Score=47.52  Aligned_cols=19  Identities=32%  Similarity=0.209  Sum_probs=14.5

Q ss_pred             CCCceEEEeCCCeeeeeec
Q 040601            5 QKKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+.+++||||||+.+..
T Consensus        19 ~~~kli~~DlDGTLl~~~~   37 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSPDH   37 (285)
T ss_dssp             --CCEEEEECCCCCSCTTS
T ss_pred             CcceEEEEeCcCCCCCCCC
Confidence            4567899999999998743

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=97.15  E-value=0.00012  Score=48.81  Aligned_cols=65  Identities=15%  Similarity=0.037  Sum_probs=42.1

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      -..+++|+||||+.+...-  .+.             ...       ..-...++++  -|+.+. ..+.++|.|++.+.
T Consensus        19 ik~vifD~DGtL~~~~~~~--~~~-------------~~~-------~~~~~~~d~~--~l~~L~~~g~~~~ivTn~~~~   74 (191)
T 3n1u_A           19 IKCLICDVDGVLSDGLLHI--DNH-------------GNE-------LKSFHVQDGM--GLKLLMAAGIQVAIITTAQNA   74 (191)
T ss_dssp             CSEEEECSTTTTBCSCCEE--CTT-------------CCE-------ECCBCHHHHH--HHHHHHHTTCEEEEECSCCSH
T ss_pred             CCEEEEeCCCCCCCCceee--cCC-------------chh-------hhhccccChH--HHHHHHHCCCeEEEEeCcChH
Confidence            4689999999999753210  010             000       0001133443  478884 67999999999999


Q ss_pred             HHHHHHHhhC
Q 040601           86 YAVMMAKLLD   95 (97)
Q Consensus        86 YA~~v~~~LD   95 (97)
                      .++.+++.+.
T Consensus        75 ~~~~~l~~lg   84 (191)
T 3n1u_A           75 VVDHRMEQLG   84 (191)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            9999998764

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=97.14  E-value=0.00041  Score=47.68  Aligned_cols=17  Identities=24%  Similarity=0.301  Sum_probs=14.2

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +.+.+++||||||+.+.
T Consensus         4 ~~kli~~DlDGTLl~~~   20 (264)
T 3epr_A            4 AYKGYLIDLDGTIYKGK   20 (264)
T ss_dssp             CCCEEEECCBTTTEETT
T ss_pred             CCCEEEEeCCCceEeCC
Confidence            35689999999999874

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=97.11  E-value=0.001  Score=45.74  Aligned_cols=17  Identities=41%  Similarity=0.440  Sum_probs=14.2

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         5 ~kli~fDlDGTLl~~~~   21 (279)
T 4dw8_A            5 YKLIVLDLDGTLTNSKK   21 (279)
T ss_dssp             CCEEEECCCCCCSCTTS
T ss_pred             ceEEEEeCCCCCCCCCC
Confidence            46799999999998743

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=97.10  E-value=0.00089  Score=46.27  Aligned_cols=17  Identities=35%  Similarity=0.477  Sum_probs=14.3

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         6 ~kli~fDlDGTLl~~~~   22 (290)
T 3dnp_A            6 KQLLALNIDGALLRSNG   22 (290)
T ss_dssp             CCEEEECCCCCCSCTTS
T ss_pred             ceEEEEcCCCCCCCCCC
Confidence            46799999999998854

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=97.04  E-value=0.0013  Score=45.87  Aligned_cols=16  Identities=44%  Similarity=0.559  Sum_probs=13.8

Q ss_pred             CCceEEEeCCCeeeee
Q 040601            6 KKLHLVLDLDHTLLHA   21 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs   21 (97)
                      +.+.+++||||||+.+
T Consensus         8 ~~~li~~DlDGTLl~~   23 (275)
T 1xvi_A            8 QPLLVFSDLDGTLLDS   23 (275)
T ss_dssp             CCEEEEEECTTTTSCS
T ss_pred             CceEEEEeCCCCCCCC
Confidence            4578999999999975

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=97.02  E-value=0.0021  Score=43.91  Aligned_cols=16  Identities=25%  Similarity=0.416  Sum_probs=13.5

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         8 ~kli~~DlDGTLl~~~   23 (268)
T 3qgm_A            8 KKGYIIDIDGVIGKSV   23 (268)
T ss_dssp             CSEEEEECBTTTEETT
T ss_pred             CCEEEEcCcCcEECCC
Confidence            4689999999999853

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=96.99  E-value=0.00084  Score=46.71  Aligned_cols=20  Identities=20%  Similarity=0.189  Sum_probs=15.5

Q ss_pred             CCCCceEEEeCCCeeeeeec
Q 040601            4 RQKKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~   23 (97)
                      ..+.+.+++||||||+.+..
T Consensus        18 ~~~~kli~~DlDGTLl~~~~   37 (283)
T 3dao_A           18 QGMIKLIATDIDGTLVKDGS   37 (283)
T ss_dssp             -CCCCEEEECCBTTTBSTTC
T ss_pred             ccCceEEEEeCcCCCCCCCC
Confidence            34567899999999997753

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=96.92  E-value=0.002  Score=44.86  Aligned_cols=15  Identities=40%  Similarity=0.552  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         5 kli~~DlDGTLl~~~   19 (288)
T 1nrw_A            5 KLIAIDLDGTLLNSK   19 (288)
T ss_dssp             CEEEEECCCCCSCTT
T ss_pred             EEEEEeCCCCCCCCC
Confidence            578999999999874

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=96.87  E-value=0.0013  Score=44.88  Aligned_cols=16  Identities=31%  Similarity=0.470  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         3 ~kli~~DlDGTLl~~~   18 (258)
T 2pq0_A            3 RKIVFFDIDGTLLDEQ   18 (258)
T ss_dssp             CCEEEECTBTTTBCTT
T ss_pred             ceEEEEeCCCCCcCCC
Confidence            3578999999999875

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=96.82  E-value=0.00082  Score=45.97  Aligned_cols=15  Identities=27%  Similarity=0.401  Sum_probs=13.2

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+++||||||+.+
T Consensus         6 ~kli~~DlDGTLl~~   20 (266)
T 3pdw_A            6 YKGYLIDLDGTMYNG   20 (266)
T ss_dssp             CSEEEEECSSSTTCH
T ss_pred             CCEEEEeCcCceEeC
Confidence            467899999999986

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=96.79  E-value=0.0029  Score=43.68  Aligned_cols=15  Identities=47%  Similarity=0.543  Sum_probs=13.0

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         3 kli~~DlDGTLl~~~   17 (268)
T 1nf2_A            3 RVFVFDLDGTLLNDN   17 (268)
T ss_dssp             CEEEEECCCCCSCTT
T ss_pred             cEEEEeCCCcCCCCC
Confidence            578999999999874

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=96.68  E-value=0.0024  Score=44.47  Aligned_cols=16  Identities=31%  Similarity=0.343  Sum_probs=13.5

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         5 ~kli~~DlDGTLl~~~   20 (282)
T 1rkq_A            5 IKLIAIDMDGTLLLPD   20 (282)
T ss_dssp             CCEEEECCCCCCSCTT
T ss_pred             ceEEEEeCCCCCCCCC
Confidence            3579999999999864

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=96.67  E-value=0.0022  Score=44.06  Aligned_cols=14  Identities=21%  Similarity=0.591  Sum_probs=12.0

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.+++|+||||++.
T Consensus         2 k~i~~D~DGtL~~~   15 (263)
T 1zjj_A            2 VAIIFDMDGVLYRG   15 (263)
T ss_dssp             EEEEEECBTTTEET
T ss_pred             eEEEEeCcCceEeC
Confidence            46899999999975

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=96.66  E-value=0.0012  Score=44.91  Aligned_cols=17  Identities=41%  Similarity=0.415  Sum_probs=14.5

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         5 ~kli~fDlDGTLl~~~~   21 (274)
T 3fzq_A            5 YKLLILDIDGTLRDEVY   21 (274)
T ss_dssp             CCEEEECSBTTTBBTTT
T ss_pred             ceEEEEECCCCCCCCCC
Confidence            46799999999998854

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=96.65  E-value=0.0026  Score=43.56  Aligned_cols=12  Identities=42%  Similarity=0.692  Sum_probs=11.0

Q ss_pred             ceEEEeCCCeee
Q 040601            8 LHLVLDLDHTLL   19 (97)
Q Consensus         8 ~~LVLDLDeTLv   19 (97)
                      +.+++||||||+
T Consensus         3 kli~~DlDGTLl   14 (249)
T 2zos_A            3 RLIFLDIDKTLI   14 (249)
T ss_dssp             EEEEECCSTTTC
T ss_pred             cEEEEeCCCCcc
Confidence            578999999999

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=96.62  E-value=0.0025  Score=43.47  Aligned_cols=15  Identities=27%  Similarity=0.343  Sum_probs=13.3

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      ...+++||||||+.+
T Consensus        17 ~~~v~~DlDGTLl~~   31 (271)
T 1vjr_A           17 IELFILDMDGTFYLD   31 (271)
T ss_dssp             CCEEEECCBTTTEET
T ss_pred             CCEEEEcCcCcEEeC
Confidence            467999999999987

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=96.56  E-value=0.005  Score=42.52  Aligned_cols=15  Identities=13%  Similarity=-0.077  Sum_probs=13.0

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+++|+||||+..
T Consensus        14 ~k~i~~D~DGtL~~~   28 (284)
T 2hx1_A           14 YKCIFFDAFGVLKTY   28 (284)
T ss_dssp             CSEEEECSBTTTEET
T ss_pred             CCEEEEcCcCCcCcC
Confidence            467899999999985

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=96.48  E-value=0.0055  Score=43.29  Aligned_cols=15  Identities=33%  Similarity=0.417  Sum_probs=13.1

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+++||||||+.+
T Consensus        27 ikli~~DlDGTLl~~   41 (301)
T 2b30_A           27 IKLLLIDFDGTLFVD   41 (301)
T ss_dssp             CCEEEEETBTTTBCC
T ss_pred             ccEEEEECCCCCcCC
Confidence            357899999999987

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=96.38  E-value=0.0053  Score=42.30  Aligned_cols=17  Identities=29%  Similarity=0.401  Sum_probs=13.9

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +.+.+++||||||+.+.
T Consensus        12 ~~kli~~DlDGTLl~~~   28 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPAR   28 (262)
T ss_dssp             -CEEEEEESBTTTBSTT
T ss_pred             CeEEEEEeCccCCCCCC
Confidence            45789999999999864

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=96.28  E-value=0.004  Score=42.57  Aligned_cols=15  Identities=40%  Similarity=0.492  Sum_probs=13.0

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++||||||+.+.
T Consensus         4 ~li~~DlDGTLl~~~   18 (244)
T 1s2o_A            4 LLLISDLDNTWVGDQ   18 (244)
T ss_dssp             EEEEECTBTTTBSCH
T ss_pred             eEEEEeCCCCCcCCH
Confidence            478999999999864

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=96.27  E-value=0.0056  Score=41.60  Aligned_cols=17  Identities=24%  Similarity=0.280  Sum_probs=14.3

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +...+++|+||||+.+.
T Consensus         4 ~~k~v~fDlDGTL~~~~   20 (264)
T 1yv9_A            4 DYQGYLIDLDGTIYLGK   20 (264)
T ss_dssp             SCCEEEECCBTTTEETT
T ss_pred             cCCEEEEeCCCeEEeCC
Confidence            45689999999999864

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=96.24  E-value=0.0037  Score=43.12  Aligned_cols=17  Identities=29%  Similarity=0.391  Sum_probs=13.9

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         3 ~kli~~DlDGTLl~~~~   19 (271)
T 1rlm_A            3 VKVIVTDMDGTFLNDAK   19 (271)
T ss_dssp             CCEEEECCCCCCSCTTS
T ss_pred             ccEEEEeCCCCCCCCCC
Confidence            35789999999998743

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=96.24  E-value=0.003  Score=44.25  Aligned_cols=17  Identities=24%  Similarity=0.311  Sum_probs=14.4

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus        37 iKli~fDlDGTLld~~~   53 (304)
T 3l7y_A           37 VKVIATDMDGTFLNSKG   53 (304)
T ss_dssp             CSEEEECCCCCCSCTTS
T ss_pred             eEEEEEeCCCCCCCCCC
Confidence            46799999999998754

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=96.23  E-value=0.0053  Score=43.04  Aligned_cols=15  Identities=20%  Similarity=0.306  Sum_probs=12.5

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+++|+||||+..
T Consensus        21 ~k~i~~D~DGTL~~~   35 (306)
T 2oyc_A           21 AQGVLFDCDGVLWNG   35 (306)
T ss_dssp             CSEEEECSBTTTEET
T ss_pred             CCEEEECCCCcEecC
Confidence            357899999999864

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=96.17  E-value=0.0071  Score=40.55  Aligned_cols=17  Identities=24%  Similarity=0.180  Sum_probs=12.5

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      -+.+++||||||+.+..
T Consensus         7 ik~i~fDlDGTLld~~~   23 (259)
T 2ho4_A            7 LKAVLVDLNGTLHIEDA   23 (259)
T ss_dssp             CCEEEEESSSSSCC---
T ss_pred             CCEEEEeCcCcEEeCCE
Confidence            46799999999998753

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=96.16  E-value=0.0057  Score=41.64  Aligned_cols=15  Identities=47%  Similarity=0.476  Sum_probs=13.2

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+++||||||+.+
T Consensus        12 iKli~~DlDGTLl~~   26 (268)
T 3r4c_A           12 IKVLLLDVDGTLLSF   26 (268)
T ss_dssp             CCEEEECSBTTTBCT
T ss_pred             eEEEEEeCCCCCcCC
Confidence            578999999999984

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=96.13  E-value=0.0089  Score=41.20  Aligned_cols=17  Identities=29%  Similarity=0.366  Sum_probs=14.3

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         4 ~kli~~DlDGTLl~~~~   20 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPPRL   20 (246)
T ss_dssp             SEEEEECSBTTTBSTTS
T ss_pred             ceEEEEeCcCCcCCCCC
Confidence            56889999999998743

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=96.11  E-value=0.0089  Score=39.49  Aligned_cols=38  Identities=11%  Similarity=-0.067  Sum_probs=34.2

Q ss_pred             EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .++||+.++|+.+. +.+.++|.|++.+.+++++++.+.
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g  130 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFG  130 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence            36999999999995 679999999999999999998764

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=96.11  E-value=0.0065  Score=41.43  Aligned_cols=15  Identities=33%  Similarity=0.454  Sum_probs=12.5

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+...
T Consensus         2 kli~~DlDGTLl~~~   16 (239)
T 1u02_A            2 SLIFLDYDGTLVPII   16 (239)
T ss_dssp             CEEEEECBTTTBCCC
T ss_pred             eEEEEecCCCCcCCC
Confidence            468999999999853

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=96.10  E-value=0.014  Score=40.24  Aligned_cols=17  Identities=18%  Similarity=0.266  Sum_probs=14.6

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++||||||+.+.
T Consensus        21 ~~kliifDlDGTLlds~   37 (289)
T 3gyg_A           21 PQYIVFCDFDETYFPHT   37 (289)
T ss_dssp             CSEEEEEETBTTTBCSS
T ss_pred             CCeEEEEECCCCCcCCC
Confidence            35689999999999975

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=96.09  E-value=0.012  Score=40.02  Aligned_cols=17  Identities=24%  Similarity=0.198  Sum_probs=14.6

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +++.+++||||||+.+.
T Consensus         5 ~~kli~~DlDGTLl~~~   21 (246)
T 2amy_A            5 GPALCLFDVDGTLTAPR   21 (246)
T ss_dssp             CSEEEEEESBTTTBCTT
T ss_pred             CceEEEEECCCCcCCCC
Confidence            56789999999999864

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=96.04  E-value=0.025  Score=39.41  Aligned_cols=39  Identities=13%  Similarity=0.064  Sum_probs=34.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...+||+.++|+.+. ..+.++|.|++.+..++.+++.+.
T Consensus       162 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~g  201 (287)
T 3a1c_A          162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN  201 (287)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhC
Confidence            468999999999995 579999999999999999998764

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=95.95  E-value=0.0092  Score=39.23  Aligned_cols=61  Identities=13%  Similarity=0.078  Sum_probs=39.1

Q ss_pred             CCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCch
Q 040601            6 KKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIR   84 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~   84 (97)
                      +-+.||+|+||||......  +++.              .      ...-.+..|.+.  .|+.| ...+.++|.|+.  
T Consensus         8 ~ikliv~D~DGtL~d~~~~--~~~~--------------g------~~~~~f~~~D~~--~L~~Lk~~Gi~~~I~Tg~--   61 (168)
T 3ewi_A            8 EIKLLVCNIDGCLTNGHIY--VSGD--------------Q------KEIISYDVKDAI--GISLLKKSGIEVRLISER--   61 (168)
T ss_dssp             CCCEEEEECCCCCSCSCCB--CCSS--------------C------CCEEEEEHHHHH--HHHHHHHTTCEEEEECSS--
T ss_pred             cCcEEEEeCccceECCcEE--EcCC--------------C------CEEEEEecCcHH--HHHHHHHCCCEEEEEeCc--
Confidence            4568999999999876431  1111              0      011123455554  57777 467899999988  


Q ss_pred             HHHHHHHH
Q 040601           85 SYAVMMAK   92 (97)
Q Consensus        85 ~YA~~v~~   92 (97)
                      ..++.+++
T Consensus        62 ~~~~~~l~   69 (168)
T 3ewi_A           62 ACSKQTLS   69 (168)
T ss_dssp             CCCHHHHH
T ss_pred             HHHHHHHH
Confidence            67888877

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=95.70  E-value=0.0038  Score=40.21  Aligned_cols=39  Identities=13%  Similarity=0.144  Sum_probs=32.9

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+.|++.++|+.+. +.+.++|+|++...+++.+++.+.
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~  114 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLG  114 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcC
Confidence            346799999999995 579999999999999988877653

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=95.66  E-value=0.015  Score=38.11  Aligned_cols=16  Identities=25%  Similarity=0.432  Sum_probs=13.8

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      +.+++||||||+++..
T Consensus         4 k~i~fDlDGTLl~~~~   19 (250)
T 2c4n_A            4 KNVICDIDGVLMHDNV   19 (250)
T ss_dssp             CEEEEECBTTTEETTE
T ss_pred             cEEEEcCcceEEeCCE
Confidence            5799999999999853

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=95.66  E-value=0.01  Score=38.56  Aligned_cols=39  Identities=8%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+.+.+.++|.|++.+.+++.+++.++
T Consensus        68 ~~~~~g~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~g  106 (206)
T 1rku_A           68 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLG  106 (206)
T ss_dssp             CCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT
T ss_pred             cCCCccHHHHHHHHHhcCcEEEEECChHHHHHHHHHHcC
Confidence            457999999999996559999999999999999998753

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=95.62  E-value=0.0032  Score=43.06  Aligned_cols=16  Identities=31%  Similarity=0.374  Sum_probs=13.6

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      +.+++||||||+.+..
T Consensus         3 kli~~DlDGTLl~~~~   18 (261)
T 2rbk_A            3 KALFFDIDGTLVSFET   18 (261)
T ss_dssp             CEEEECSBTTTBCTTT
T ss_pred             cEEEEeCCCCCcCCCC
Confidence            5789999999998754

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=95.52  E-value=0.01  Score=39.78  Aligned_cols=38  Identities=16%  Similarity=0.300  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +..+||+.++|+.+. +.+.++|.|++.+.+++.+++-|
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l  114 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGI  114 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTT
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcC
Confidence            568999999999995 67999999999999999988744

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=95.50  E-value=0.016  Score=38.05  Aligned_cols=39  Identities=41%  Similarity=0.452  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+.+.+.++|.|++.+..++.+++.++
T Consensus        83 ~~~~~g~~~~l~~L~~~~~l~i~T~~~~~~~~~~l~~~g  121 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLE  121 (210)
T ss_dssp             CEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcC
Confidence            467899999999996699999999999999999888653

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=95.48  E-value=0.023  Score=37.97  Aligned_cols=16  Identities=19%  Similarity=0.233  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      -+.+++||||||+.+.
T Consensus        12 ~k~i~fDlDGTLl~s~   27 (271)
T 2x4d_A           12 VRGVLLDISGVLYDSG   27 (271)
T ss_dssp             CCEEEECCBTTTEECC
T ss_pred             CCEEEEeCCCeEEecC
Confidence            3578999999999974

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=95.46  E-value=0.017  Score=39.51  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+.+.+.++|.|++.+..++.+++.++
T Consensus       120 ~~~~~g~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~g  158 (260)
T 2gfh_A          120 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACA  158 (260)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHcCCcEEEEECcChHHHHHHHHhcC
Confidence            457899999999998779999999999999999888764

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=95.20  E-value=0.042  Score=35.82  Aligned_cols=39  Identities=21%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+.+  .+.++|.|++.+.+++.+++.+.
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~  132 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPG  132 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTT
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCC
Confidence            5788999999999975  59999999999999999887654

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=95.03  E-value=0.046  Score=34.76  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=34.1

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+.+ .+.++|.|++.+.+++.+++.+.
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~  127 (214)
T 3e58_A           88 ELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENR  127 (214)
T ss_dssp             HHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcC
Confidence            3678999999999964 59999999999999999987653

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=95.00  E-value=0.041  Score=36.29  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+..+||+.++|+.+. ..+.++|.|++.+.+++.+++.+.
T Consensus        81 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g  121 (222)
T 2nyv_A           81 YTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILN  121 (222)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC
Confidence            3568999999999996 469999999999999999988754

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=94.91  E-value=0.05  Score=35.63  Aligned_cols=39  Identities=8%  Similarity=0.033  Sum_probs=34.0

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. ..+.++|.|++...+++.+++.++
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~  133 (232)
T 1zrn_A           94 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAG  133 (232)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcC
Confidence            467899999999995 569999999999999999988653

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=94.91  E-value=0.037  Score=36.03  Aligned_cols=40  Identities=30%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .....||+.++|+.+ +..+.++|.|++.+..+..+++.++
T Consensus        82 ~~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~  122 (216)
T 3kbb_A           82 LLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLD  122 (216)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred             hcccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcC
Confidence            346789999999999 5789999999999999999988764

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=94.84  E-value=0.026  Score=38.46  Aligned_cols=14  Identities=43%  Similarity=0.461  Sum_probs=12.6

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      .+++||||||+.+.
T Consensus         2 li~~DlDGTLl~~~   15 (259)
T 3zx4_A            2 IVFTDLDGTLLDER   15 (259)
T ss_dssp             EEEECCCCCCSCSS
T ss_pred             EEEEeCCCCCcCCC
Confidence            58999999999886

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=94.80  E-value=0.034  Score=38.28  Aligned_cols=38  Identities=5%  Similarity=0.073  Sum_probs=33.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+. +.+.++|.|++.+..++.+++.+
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~  167 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHS  167 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTB
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhh
Confidence            568999999999994 68999999999999999988753

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=94.79  E-value=0.05  Score=36.47  Aligned_cols=39  Identities=13%  Similarity=0.173  Sum_probs=34.3

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. +.+.++|.|++...+++.+++.+.
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~g  152 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFG  152 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcC
Confidence            468899999999995 569999999999999999988754

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=94.73  E-value=0.034  Score=36.94  Aligned_cols=38  Identities=8%  Similarity=-0.033  Sum_probs=33.0

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+.+...++|.|++.+.+++.+++.+
T Consensus        95 ~~~~~g~~~~l~~l~~~g~~~i~Tn~~~~~~~~~l~~~  132 (231)
T 2p11_A           95 SRVYPGALNALRHLGARGPTVILSDGDVVFQPRKIARS  132 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTSCEEEEEECCSSHHHHHHHHT
T ss_pred             CCcCccHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHc
Confidence            45789999999999654489999999999999998865

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=94.70  E-value=0.0077  Score=39.58  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             EEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHh
Q 040601           57 VKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      +...||+.++|+.+.+  .+.++|.|++.+..++.+++.
T Consensus        74 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~  112 (197)
T 1q92_A           74 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEK  112 (197)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHH
T ss_pred             CCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHHHH
Confidence            5678999999999965  699999999999887776654

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=94.67  E-value=0.04  Score=36.37  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...+||+.++|+.+.+ .+.++|.|++.+.+++.+++.++
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~  148 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFD  148 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcC
Confidence            5689999999999965 59999999999999999988754

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=94.64  E-value=0.033  Score=35.99  Aligned_cols=38  Identities=13%  Similarity=0.139  Sum_probs=33.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +..+||+.++|+.+.+.+.++|.|++.+.+++.+++.+
T Consensus        82 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~  119 (209)
T 2hdo_A           82 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSY  119 (209)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTS
T ss_pred             CCcCCCHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHc
Confidence            56899999999999644999999999999999988765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.58  E-value=0.0047  Score=43.14  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=41.4

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchH
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRS   85 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~   85 (97)
                      +..+++|.|+|+-....... ..|  .  .                 .......||+.++|+.+. +.+.++|.|+....
T Consensus       159 ~~~i~iD~dgtl~~~~~~~~-~~~--~--~-----------------~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~  216 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNGRGP-YDL--E--K-----------------CDTDVINPMVVELSKMYALMGYQIVVVSGRESG  216 (301)
T ss_dssp             CEEEEEETBTTTBCCSSCCT-TCG--G--G-----------------GGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred             cceEEEeCCCCcccccCCCc-hhh--h--h-----------------ccccCCChHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            35788999999866543211 111  0  0                 001347899999999995 67999999999977


Q ss_pred             HHH
Q 040601           86 YAV   88 (97)
Q Consensus        86 YA~   88 (97)
                      +++
T Consensus       217 ~~~  219 (301)
T 1ltq_A          217 TKE  219 (301)
T ss_dssp             CSS
T ss_pred             cch
Confidence            763

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=94.51  E-value=0.064  Score=34.96  Aligned_cols=39  Identities=10%  Similarity=0.024  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+. ..+.++|.|++...+++.+++.+.
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~  137 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAG  137 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCC
Confidence            567899999999996 459999999999999999987653

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=94.44  E-value=0.014  Score=38.33  Aligned_cols=18  Identities=22%  Similarity=0.412  Sum_probs=15.5

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      +++.+++|+||||+.|..
T Consensus         3 ~~k~viFDlDGTL~Ds~~   20 (197)
T 1q92_A            3 RALRVLVDMDGVLADFEG   20 (197)
T ss_dssp             CCEEEEECSBTTTBCHHH
T ss_pred             CceEEEEeCCCCCccCcH
Confidence            567899999999999854

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=94.41  E-value=0.053  Score=34.70  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=33.3

Q ss_pred             ecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+||+.++|+.+. ..+.++|.|++...+++.+++.+.
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~  120 (219)
T 3kd3_A           83 LTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLN  120 (219)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcC
Confidence            7899999999995 569999999999999999988764

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=94.34  E-value=0.082  Score=34.89  Aligned_cols=39  Identities=13%  Similarity=0.093  Sum_probs=33.7

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. +.+.++|.|++.+.+++.+++.++
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~  143 (240)
T 2no4_A          104 LSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASK  143 (240)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcC
Confidence            357799999999995 569999999999999999988653

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=94.30  E-value=0.011  Score=38.11  Aligned_cols=26  Identities=23%  Similarity=0.581  Sum_probs=23.8

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTG   82 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~   82 (97)
                      +...||+.++|+.|.+.+.++|.|++
T Consensus        68 ~~~~pg~~e~L~~L~~~~~~~i~T~~   93 (180)
T 3bwv_A           68 LDVMPHAQEVVKQLNEHYDIYIATAA   93 (180)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEECC
T ss_pred             CCCCcCHHHHHHHHHhcCCEEEEeCC
Confidence            56789999999999777999999998

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=94.29  E-value=0.037  Score=41.07  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.|. +.+.++|.|++.+.+++.+++.++
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lg  253 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLG  253 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcC
Confidence            567999999999995 569999999999999999987653

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=94.26  E-value=0.056  Score=36.00  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+. +.+.++|.|++.+..++.+++.+.
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~  148 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELF  148 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHS
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC
Confidence            467899999999995 569999999999999999888754

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=94.26  E-value=0.085  Score=34.28  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....|++.++|+.+.+.+.++|.|++.+.+++.+++.+
T Consensus       106 ~~~~~~~~~~l~~l~~g~~~~i~sn~~~~~~~~~l~~~  143 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLAPQYNLYILSNGFRELQSRKMRSA  143 (240)
T ss_dssp             CCBSTTHHHHHHHHTTTSEEEEEECSCHHHHHHHHHHH
T ss_pred             CCcCccHHHHHHHHHcCCeEEEEeCCchHHHHHHHHHc
Confidence            56789999999999988999999999999999988765

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=94.23  E-value=0.064  Score=35.92  Aligned_cols=38  Identities=11%  Similarity=0.061  Sum_probs=34.1

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+. .+.++|.|++.+.+++.+++.++
T Consensus        92 ~~~~~~~~~~l~~l~-g~~~~i~t~~~~~~~~~~l~~~g  129 (253)
T 1qq5_A           92 LTPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANAG  129 (253)
T ss_dssp             CCBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHHc-CCCEEEEeCcCHHHHHHHHHHCC
Confidence            457899999999999 99999999999999999987653

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=94.22  E-value=0.088  Score=34.84  Aligned_cols=39  Identities=23%  Similarity=0.136  Sum_probs=33.8

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+. ..+.++|.|++.+.+++.+++.+.
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~  132 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLE  132 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcC
Confidence            457899999999996 569999999999999999887653

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=94.21  E-value=0.0093  Score=38.04  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +..+||+.++|+.+. ..+.++|.|++...+++.+ +.+
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~  115 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KEL  115 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTT
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHc
Confidence            368999999999996 4599999999999888776 554

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=94.15  E-value=0.054  Score=35.16  Aligned_cols=39  Identities=15%  Similarity=0.040  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...|++.++|+.+.+.+.++|.|++.+..++.+++.|.
T Consensus        98 ~~~~~~~~~~l~~l~~~~~~~i~tn~~~~~~~~~l~~l~  136 (240)
T 3smv_A           98 WPAFPDTVEALQYLKKHYKLVILSNIDRNEFKLSNAKLG  136 (240)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEEEESSCHHHHHHHHTTTC
T ss_pred             CCCCCcHHHHHHHHHhCCeEEEEeCCChhHHHHHHHhcC
Confidence            357899999999998789999999999999998887654

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=94.13  E-value=0.086  Score=34.48  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=34.0

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....||+.++|+.+.+ .+.++|.|++...+++.+++.++
T Consensus       103 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~  142 (237)
T 4ex6_A          103 RLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTG  142 (237)
T ss_dssp             GGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHT
T ss_pred             CccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcC
Confidence            3478999999999965 69999999999999999987653

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=94.08  E-value=0.019  Score=37.61  Aligned_cols=16  Identities=31%  Similarity=0.449  Sum_probs=14.0

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         4 ~k~viFDlDGTL~d~~   19 (210)
T 2ah5_A            4 ITAIFFDLDGTLVDSS   19 (210)
T ss_dssp             CCEEEECSBTTTEECH
T ss_pred             CCEEEEcCCCcCccCH
Confidence            4689999999999985

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=94.06  E-value=0.018  Score=37.18  Aligned_cols=39  Identities=15%  Similarity=-0.016  Sum_probs=33.5

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...|++.++|+.+. ..+.+++.|++...+++.+++.++
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~  127 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHM  127 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSS
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcC
Confidence            456899999999995 579999999999999999887653

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=94.02  E-value=0.054  Score=35.14  Aligned_cols=39  Identities=10%  Similarity=0.131  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+. ..+.++|.|++.+.+++.+++.+.
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~  124 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFK  124 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhC
Confidence            468899999999996 569999999999999999988753

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=93.96  E-value=0.021  Score=37.27  Aligned_cols=17  Identities=29%  Similarity=0.505  Sum_probs=14.4

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         4 ~k~iifDlDGTL~d~~~   20 (234)
T 2hcf_A            4 RTLVLFDIDGTLLKVES   20 (234)
T ss_dssp             CEEEEECCBTTTEEECT
T ss_pred             ceEEEEcCCCCcccCcc
Confidence            46799999999999854

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=93.95  E-value=0.094  Score=34.41  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=32.7

Q ss_pred             EEEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+.+.+ .+.++|.|++.+ +++.+++.++
T Consensus        93 ~~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~g  132 (220)
T 2zg6_A           93 EAFLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFD  132 (220)
T ss_dssp             EEEECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHT
T ss_pred             CceECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcC
Confidence            56789999999999965 699999999977 5888877653

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=93.92  E-value=0.093  Score=34.00  Aligned_cols=38  Identities=18%  Similarity=0.151  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ...+||+.++|+.+. ..+.++|.|++...+++.+++.+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~  128 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDTATINLKAL  128 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTT
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhc
Confidence            568999999999996 45999999999999999998765

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=93.90  E-value=0.11  Score=33.67  Aligned_cols=39  Identities=10%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....||+.++|+.+.+.+.++|.|++.+.+++.+++.+.
T Consensus       102 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~  140 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSG  140 (238)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHTT
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcC
Confidence            567899999999996559999999999999999887653

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=93.89  E-value=0.015  Score=38.66  Aligned_cols=17  Identities=29%  Similarity=0.481  Sum_probs=14.4

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus        10 ~~k~viFDlDGTL~ds~   26 (231)
T 2p11_A           10 HDIVFLFDCDNTLLDND   26 (231)
T ss_dssp             CSEEEEECCBTTTBCHH
T ss_pred             CCeEEEEcCCCCCEecH
Confidence            35589999999999885

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=93.88  E-value=0.057  Score=39.93  Aligned_cols=39  Identities=5%  Similarity=0.048  Sum_probs=35.6

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .++++|++.+.++.| +..++++|.|+|....++++++.+
T Consensus       219 gir~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~l  258 (385)
T 4gxt_A          219 GIRTLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDT  258 (385)
T ss_dssp             CCEECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCT
T ss_pred             CceeCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHh
Confidence            346899999999999 688999999999999999999875

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=93.88  E-value=0.096  Score=34.95  Aligned_cols=40  Identities=8%  Similarity=-0.069  Sum_probs=34.9

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .....||+.++|+.+. ..+.++|.|++...+++.+++.++
T Consensus       108 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~  148 (259)
T 4eek_A          108 GVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAG  148 (259)
T ss_dssp             TCEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTT
T ss_pred             cCCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcC
Confidence            3578999999999996 479999999999999999987653

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=93.83  E-value=0.018  Score=37.11  Aligned_cols=39  Identities=13%  Similarity=0.088  Sum_probs=33.5

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....|++.++|+.+.+ .+.++|.|++.+.+++.+++.++
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~  132 (226)
T 1te2_A           93 RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFD  132 (226)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcC
Confidence            4578999999999964 69999999999999999887653

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=93.70  E-value=0.02  Score=36.77  Aligned_cols=17  Identities=24%  Similarity=0.471  Sum_probs=13.7

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus         3 mik~i~fDlDGTL~d~~   19 (219)
T 3kd3_A            3 AMKNIIFDFDSTLIKKE   19 (219)
T ss_dssp             -CEEEEECCCCCCBSSC
T ss_pred             cceEEEEeCCCCCcCcc
Confidence            34689999999999854

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=93.65  E-value=0.063  Score=34.56  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=32.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.+ |+.+.+.+.++|.|++.+.+++.+++.+.
T Consensus        73 ~~~~~~~~~-l~~l~~~~~~~i~t~~~~~~~~~~l~~~~  110 (201)
T 2w43_A           73 LKAYEDTKY-LKEISEIAEVYALSNGSINEVKQHLERNG  110 (201)
T ss_dssp             CEECGGGGG-HHHHHHHSEEEEEESSCHHHHHHHHHHTT
T ss_pred             cccCCChHH-HHHHHhCCeEEEEeCcCHHHHHHHHHHCC
Confidence            467899999 99995339999999999999999988754

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=93.64  E-value=0.017  Score=36.68  Aligned_cols=35  Identities=11%  Similarity=0.067  Sum_probs=29.3

Q ss_pred             ecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601           59 LRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        59 ~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+|++.++|+.+.+ .+.+++.|++. .+++.+++.+
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~l~~~  118 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRN-DQVLEILEKT  118 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC-THHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCc-HHHHHHHHHc
Confidence            78999999999964 69999999886 4788777654

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=93.60  E-value=0.061  Score=37.55  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=35.9

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+.+|||+.+|++.|. ....++|.|.+....|+++++.+-
T Consensus       139 ~i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g  179 (297)
T 4fe3_A          139 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAG  179 (297)
T ss_dssp             CCCBCBTHHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTT
T ss_pred             CCCCCCcHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcC
Confidence            3679999999999994 679999999999999999998763

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=93.59  E-value=0.14  Score=33.27  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....|++.++|+.+.+.+.++|.|++...+++.+++.+.
T Consensus        99 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~  137 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALG  137 (234)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEESSCHHHHHHHHHHTT
T ss_pred             CCcCcCHHHHHHHHHhCCcEEEEECCCHHHHHHHHHHcC
Confidence            457899999999996559999999999999999887653

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=93.49  E-value=0.023  Score=35.96  Aligned_cols=37  Identities=24%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ...+|++.++|+.+.+ .+.++++|++...+++ +++.+
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~  121 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDL  121 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHH
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHc
Confidence            4678999999999965 6999999999999988 77665

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=93.47  E-value=0.022  Score=36.79  Aligned_cols=16  Identities=25%  Similarity=0.347  Sum_probs=13.5

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      +.+++|+||||+.+..
T Consensus         2 k~iiFDlDGTL~d~~~   17 (201)
T 2w43_A            2 IILAFDIFGTVLDTST   17 (201)
T ss_dssp             CEEEECCBTTTEEGGG
T ss_pred             cEEEEeCCCceecchh
Confidence            3689999999999853

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=93.46  E-value=0.024  Score=36.11  Aligned_cols=16  Identities=19%  Similarity=0.387  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         5 ~k~i~fDlDGTL~~~~   20 (214)
T 3e58_A            5 VEAIIFDMDGVLFDTE   20 (214)
T ss_dssp             CCEEEEESBTTTBCCH
T ss_pred             ccEEEEcCCCCccccH
Confidence            4689999999999864

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=93.45  E-value=0.1  Score=34.76  Aligned_cols=38  Identities=16%  Similarity=0.076  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+.+.+.++|.|++...++..+++.+
T Consensus       111 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~  148 (251)
T 2pke_A          111 VEVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQS  148 (251)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHH
T ss_pred             CCcCccHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence            46789999999999877999999999999999888764

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=93.45  E-value=0.023  Score=37.29  Aligned_cols=18  Identities=33%  Similarity=0.403  Sum_probs=14.9

Q ss_pred             CCCceEEEeCCCeeeeee
Q 040601            5 QKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~   22 (97)
                      .+-+.+++|+||||+.+.
T Consensus        17 ~~ik~i~fDlDGTL~d~~   34 (237)
T 4ex6_A           17 AADRGVILDLDGTLADTP   34 (237)
T ss_dssp             CCCEEEEECSBTTTBCCH
T ss_pred             ccCCEEEEcCCCCCcCCH
Confidence            455789999999999874

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=93.44  E-value=0.024  Score=36.70  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=13.4

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         5 k~iifDlDGTL~d~~   19 (209)
T 2hdo_A            5 QALMFDIDGTLTNSQ   19 (209)
T ss_dssp             SEEEECSBTTTEECH
T ss_pred             cEEEEcCCCCCcCCH
Confidence            579999999999875

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=93.34  E-value=0.095  Score=35.64  Aligned_cols=39  Identities=21%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             EEecchHHHHHHHHh-hcc--eEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMY--EIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~--ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...||+.++|+.+. ..+  .++|.|++.+.+++.+++.+.
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~g  182 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLG  182 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHT
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCC
Confidence            567899999999996 478  999999999999999988654

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=93.25  E-value=0.032  Score=37.46  Aligned_cols=16  Identities=31%  Similarity=0.389  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        23 ~k~iiFDlDGTL~d~~   38 (243)
T 2hsz_A           23 FKLIGFDLDGTLVNSL   38 (243)
T ss_dssp             CSEEEECSBTTTEECH
T ss_pred             CCEEEEcCCCcCCCCH
Confidence            4579999999999984

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=93.24  E-value=0.03  Score=36.43  Aligned_cols=17  Identities=35%  Similarity=0.561  Sum_probs=14.4

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus         5 ~~k~i~fDlDGTL~~~~   21 (233)
T 3s6j_A            5 PQTSFIFDLDGTLTDSV   21 (233)
T ss_dssp             CCCEEEECCBTTTEECH
T ss_pred             cCcEEEEcCCCccccCh
Confidence            35689999999999884

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=93.21  E-value=0.12  Score=34.12  Aligned_cols=39  Identities=10%  Similarity=0.052  Sum_probs=34.5

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....|++.++|+.+.+.+.++|.|++...+++.+++.+.
T Consensus       119 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~g  157 (254)
T 3umc_A          119 LRPWPDTLAGMHALKADYWLAALSNGNTALMLDVARHAG  157 (254)
T ss_dssp             CEECTTHHHHHHHHTTTSEEEECCSSCHHHHHHHHHHHT
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcC
Confidence            356899999999998779999999999999999988764

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=93.20  E-value=0.024  Score=37.85  Aligned_cols=16  Identities=25%  Similarity=0.125  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus        13 ~k~iifDlDGTL~d~~   28 (251)
T 2pke_A           13 IQLVGFDGDDTLWKSE   28 (251)
T ss_dssp             CCEEEECCBTTTBCCH
T ss_pred             eeEEEEeCCCCCccCc
Confidence            3589999999999874

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=93.20  E-value=0.17  Score=32.31  Aligned_cols=37  Identities=14%  Similarity=0.261  Sum_probs=31.8

Q ss_pred             EecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           58 KLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        58 ~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ...||+.++|+.+.+...++|.|++.+.+++.+++.+
T Consensus        86 ~~~~~~~~~l~~l~~~g~~~i~s~~~~~~~~~~l~~~  122 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTF  122 (200)
T ss_dssp             CBCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHH
T ss_pred             ccCccHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHhC
Confidence            4789999999999543399999999999999988764

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=93.16  E-value=0.026  Score=36.71  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...|++.++|+.+..  .++|.|++.+.+++.+++.+.
T Consensus        86 ~~~~~~~~~~l~~l~~--~~~i~s~~~~~~~~~~l~~~~  122 (229)
T 2fdr_A           86 VKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVG  122 (229)
T ss_dssp             CCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTT
T ss_pred             CccCcCHHHHHHHhCC--CEEEEECCChhHHHHHHHhCC
Confidence            4578999999999875  899999999999999887653

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=93.16  E-value=0.036  Score=36.47  Aligned_cols=17  Identities=18%  Similarity=0.210  Sum_probs=14.4

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++|+||||+.+..
T Consensus         3 ~k~viFDlDGTL~d~~~   19 (220)
T 2zg6_A            3 YKAVLVDFGNTLVGFKP   19 (220)
T ss_dssp             CCEEEECSBTTTEEEEE
T ss_pred             ceEEEEcCCCceecccc
Confidence            35799999999999863

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=93.16  E-value=0.028  Score=37.55  Aligned_cols=16  Identities=25%  Similarity=0.397  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++||||||+.+.
T Consensus         4 ~k~viFDlDGTL~ds~   19 (240)
T 2hi0_A            4 YKAAIFDMDGTILDTS   19 (240)
T ss_dssp             CSEEEECSBTTTEECH
T ss_pred             ccEEEEecCCCCccCH
Confidence            3579999999999984

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=93.16  E-value=0.026  Score=36.81  Aligned_cols=15  Identities=20%  Similarity=0.445  Sum_probs=12.7

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         2 kAViFD~DGTL~ds~   16 (216)
T 3kbb_A            2 EAVIFDMDGVLMDTE   16 (216)
T ss_dssp             CEEEEESBTTTBCCG
T ss_pred             eEEEECCCCcccCCH
Confidence            468999999999864

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=93.09  E-value=0.027  Score=36.17  Aligned_cols=16  Identities=25%  Similarity=0.183  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         4 ~k~viFDlDGTL~d~~   19 (200)
T 3cnh_A            4 IKALFWDIGGVLLTNG   19 (200)
T ss_dssp             CCEEEECCBTTTBCCS
T ss_pred             ceEEEEeCCCeeECCC
Confidence            4579999999999975

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=93.06  E-value=0.03  Score=36.82  Aligned_cols=36  Identities=8%  Similarity=-0.049  Sum_probs=28.7

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHH
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAK   92 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~   92 (97)
                      ....||+.++|+.+. ..+.++|.|++...++..+++
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~  143 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLN  143 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHH
Confidence            567899999999996 569999999999998888775

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.06  E-value=0.029  Score=36.28  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=33.9

Q ss_pred             EEEecchHHHHHHHHhh-c-ceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASK-M-YEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~-~-~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+.+.+ . +.++|.|++...+++.+++.+.
T Consensus       103 ~~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~  144 (234)
T 3ddh_A          103 PIELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSG  144 (234)
T ss_dssp             CCCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHT
T ss_pred             cCCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhC
Confidence            34678999999999965 4 9999999999999998887653

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=93.00  E-value=0.088  Score=34.50  Aligned_cols=39  Identities=23%  Similarity=0.060  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...|++.++|+.+.+.+.++|.|++....++.+++.+.
T Consensus       115 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~  153 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAEYIIGPLSNGNTSLLLDMAKNAG  153 (254)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEECSSSCHHHHHHHHHHHT
T ss_pred             CcCCcCHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHhCC
Confidence            356899999999997669999999999999999888764

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=93.00  E-value=0.028  Score=36.90  Aligned_cols=17  Identities=24%  Similarity=0.223  Sum_probs=14.1

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         4 ~k~viFDlDGTL~d~~~   20 (232)
T 1zrn_A            4 IKGIAFDLYGTLFDVHS   20 (232)
T ss_dssp             CCEEEECSBTTTEETHH
T ss_pred             ceEEEEecCCcccCchh
Confidence            35899999999998753

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=92.99  E-value=0.025  Score=36.77  Aligned_cols=16  Identities=31%  Similarity=0.357  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         4 ~k~i~fDlDGTL~d~~   19 (226)
T 3mc1_A            4 YNYVLFDLDGTLTDSA   19 (226)
T ss_dssp             CCEEEECSBTTTBCCH
T ss_pred             CCEEEEeCCCccccCH
Confidence            4689999999999874

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=92.94  E-value=0.02  Score=36.93  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=27.8

Q ss_pred             EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ..+|++.++|+.+. ..+.+++.|++  ..++.+++.+
T Consensus        91 ~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~  126 (221)
T 2wf7_A           91 DVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERM  126 (221)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHc
Confidence            46799999999996 46999999998  5566666654

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=92.91  E-value=0.027  Score=37.09  Aligned_cols=17  Identities=41%  Similarity=0.518  Sum_probs=14.2

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      +..+++|+||||+.+..
T Consensus         4 ~k~viFDlDGTL~d~~~   20 (232)
T 3fvv_A            4 RRLALFDLDHTLLPLDS   20 (232)
T ss_dssp             CEEEEECCBTTTBSSCH
T ss_pred             CcEEEEeCCCCCcCCch
Confidence            46889999999998753

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=92.89  E-value=0.14  Score=32.86  Aligned_cols=16  Identities=25%  Similarity=0.225  Sum_probs=13.9

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         8 ik~i~fDlDGTL~~~~   23 (234)
T 3ddh_A            8 IKVIAFDADDTLWSNE   23 (234)
T ss_dssp             CCEEEECCBTTTBCCH
T ss_pred             ccEEEEeCCCCCccCc
Confidence            3689999999999885

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=92.89  E-value=0.026  Score=38.18  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             EecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...||+.++|+.+. ..+.+++.|++  ..+..+++.+.
T Consensus       116 ~~~p~~~~ll~~Lk~~g~~i~i~~~~--~~~~~~L~~~g  152 (250)
T 4gib_A          116 DILPGIESLLIDVKSNNIKIGLSSAS--KNAINVLNHLG  152 (250)
T ss_dssp             GSCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHhccccccccccc--chhhhHhhhcc
Confidence            46799999999995 56667665544  45677776543

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=92.80  E-value=0.028  Score=36.72  Aligned_cols=16  Identities=31%  Similarity=0.432  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         7 ~k~i~fDlDGTL~d~~   22 (238)
T 3ed5_A            7 YRTLLFDVDDTILDFQ   22 (238)
T ss_dssp             CCEEEECCBTTTBCHH
T ss_pred             CCEEEEcCcCcCcCCc
Confidence            4689999999999874

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=92.77  E-value=0.23  Score=31.76  Aligned_cols=16  Identities=25%  Similarity=0.436  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         9 ~k~i~fDlDGTL~~~~   24 (226)
T 1te2_A            9 ILAAIFDMDGLLIDSE   24 (226)
T ss_dssp             CCEEEECCBTTTBCCH
T ss_pred             CCEEEECCCCCcCcCH
Confidence            4689999999999874

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=92.76  E-value=0.038  Score=36.07  Aligned_cols=17  Identities=24%  Similarity=0.186  Sum_probs=14.3

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +.+.+++|+||||+.+.
T Consensus         3 ~~k~i~FDlDGTL~d~~   19 (233)
T 3umb_A            3 SIRAVVFDAYGTLFDVY   19 (233)
T ss_dssp             CCCEEEECSBTTTEETH
T ss_pred             CceEEEEeCCCcccccH
Confidence            34689999999999875

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=92.69  E-value=0.027  Score=36.86  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             ecchHHHHHHHHhh-cceEEEEeCCchHHHHHHHHhh
Q 040601           59 LRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        59 ~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ..||+.++|+.+.+ .+.++|.|++..  ++.+++.+
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~  127 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRL  127 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHT
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHc
Confidence            68999999999965 599999999865  77777654

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=92.68  E-value=0.026  Score=36.70  Aligned_cols=37  Identities=8%  Similarity=0.060  Sum_probs=32.0

Q ss_pred             ecchHHHHHHHHhh-cceEEEEeCCc---hHHHHHHHHhhC
Q 040601           59 LRPYIRKFLKEASK-MYEIYLCTTGI---RSYAVMMAKLLD   95 (97)
Q Consensus        59 ~RP~~~~FL~~ls~-~~ei~i~T~~~---~~YA~~v~~~LD   95 (97)
                      .+|++.++|+.+.+ .+.++|.|++.   +.+++.+++.++
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~  140 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFG  140 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTT
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCC
Confidence            48999999999964 59999999999   999988887653

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=92.66  E-value=0.034  Score=37.01  Aligned_cols=35  Identities=20%  Similarity=0.109  Sum_probs=29.9

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCCchHHHHHHH
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTGIRSYAVMMA   91 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~~~~YA~~v~   91 (97)
                      +...||+.++|+.+.+ .+.++|.|++.+..+...+
T Consensus       111 ~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l  146 (250)
T 3l5k_A          111 AALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKT  146 (250)
T ss_dssp             CCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHH
Confidence            4689999999999964 5999999999988777654

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=92.55  E-value=0.036  Score=36.65  Aligned_cols=16  Identities=19%  Similarity=0.125  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        22 ik~i~fDlDGTL~d~~   37 (254)
T 3umc_A           22 MRAILFDVFGTLVDWR   37 (254)
T ss_dssp             CCEEEECCBTTTEEHH
T ss_pred             CcEEEEeCCCccEecC
Confidence            4679999999999874

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=92.55  E-value=0.037  Score=37.02  Aligned_cols=38  Identities=8%  Similarity=-0.148  Sum_probs=33.3

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....||+.++|+.+. ..+.++|.|++...+++.+++.+
T Consensus       110 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~  148 (277)
T 3iru_A          110 SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAA  148 (277)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH
T ss_pred             CccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhc
Confidence            467899999999996 56999999999999999988754

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=92.51  E-value=0.048  Score=36.49  Aligned_cols=17  Identities=24%  Similarity=0.282  Sum_probs=14.4

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus        27 ~ik~i~fDlDGTL~d~~   43 (259)
T 4eek_A           27 PFDAVLFDLDGVLVESE   43 (259)
T ss_dssp             CCSEEEEESBTTTEECH
T ss_pred             CCCEEEECCCCCcccCH
Confidence            35689999999999874

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=92.49  E-value=0.037  Score=37.74  Aligned_cols=17  Identities=18%  Similarity=0.321  Sum_probs=14.4

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus        56 ~~k~i~FDlDGTL~d~~   72 (282)
T 3nuq_A           56 NLKVFFFDIDNCLYKSS   72 (282)
T ss_dssp             CCCEEEECCTTTTSCCC
T ss_pred             CCCEEEEecCCCcccCC
Confidence            34789999999999973

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=92.40  E-value=0.034  Score=37.34  Aligned_cols=38  Identities=13%  Similarity=-0.001  Sum_probs=32.4

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....||+.++|+.+. ..+.++|.|++....++.+++.+
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~  140 (267)
T 1swv_A          102 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEA  140 (267)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHH
T ss_pred             cccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence            356799999999995 56999999999999999888764

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=92.39  E-value=0.052  Score=35.80  Aligned_cols=16  Identities=31%  Similarity=0.308  Sum_probs=14.0

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        29 ik~iifDlDGTL~d~~   44 (240)
T 3sd7_A           29 YEIVLFDLDGTLTDPK   44 (240)
T ss_dssp             CSEEEECSBTTTEECH
T ss_pred             ccEEEEecCCcCccCH
Confidence            3789999999999884

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=92.39  E-value=0.037  Score=37.80  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=14.9

Q ss_pred             CCceEEEeCCCeeeeeec
Q 040601            6 KKLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~~   23 (97)
                      +...+++|+||||+.+..
T Consensus        17 ~~k~viFDlDGTLvds~~   34 (260)
T 2gfh_A           17 RVRAVFFDLDNTLIDTAG   34 (260)
T ss_dssp             CCCEEEECCBTTTBCHHH
T ss_pred             cceEEEEcCCCCCCCCHH
Confidence            456899999999999853

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=92.38  E-value=0.035  Score=36.75  Aligned_cols=16  Identities=31%  Similarity=0.150  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        14 ~k~viFDlDGTL~d~~   29 (240)
T 2no4_A           14 LRACVFDAYGTLLDVH   29 (240)
T ss_dssp             CCEEEECCBTTTBCTT
T ss_pred             ccEEEEeCCCcccccH
Confidence            4689999999999874

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=92.37  E-value=0.03  Score=37.16  Aligned_cols=15  Identities=33%  Similarity=0.510  Sum_probs=13.2

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         3 k~iiFDlDGTL~d~~   17 (241)
T 2hoq_A            3 KVIFFDLDDTLVDTS   17 (241)
T ss_dssp             CEEEECSBTTTBCHH
T ss_pred             cEEEEcCCCCCCCCh
Confidence            478999999999875

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=92.32  E-value=0.041  Score=37.64  Aligned_cols=39  Identities=18%  Similarity=0.095  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....||+.++|+.+.+  .+.++|.|++.+.+++.+++.++
T Consensus       113 ~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~  153 (275)
T 2qlt_A          113 SIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILK  153 (275)
T ss_dssp             CEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHT
T ss_pred             CCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcC
Confidence            4578999999999975  59999999999999999988764

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=92.30  E-value=0.031  Score=36.37  Aligned_cols=16  Identities=25%  Similarity=0.065  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         6 ~k~i~fD~DGTL~d~~   21 (240)
T 3smv_A            6 FKALTFDCYGTLIDWE   21 (240)
T ss_dssp             CSEEEECCBTTTBCHH
T ss_pred             ceEEEEeCCCcCcCCc
Confidence            4678999999999875

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=92.30  E-value=0.034  Score=36.26  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchH
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRS   85 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~   85 (97)
                      +...||+.++|+.+.+.+.++|.|++...
T Consensus       104 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~  132 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKTFTLGVITNGNAD  132 (230)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEESSCCC
T ss_pred             CccCcCHHHHHHHHHhCCeEEEEECCchh
Confidence            45889999999999766999999998754

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=92.16  E-value=0.046  Score=36.86  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ...||+.++|+.+ ++.+.+++.|++..  +..+++.+
T Consensus        95 ~~~pg~~~ll~~L~~~g~~i~i~t~~~~--~~~~l~~~  130 (243)
T 4g9b_A           95 AVLPGIRSLLADLRAQQISVGLASVSLN--APTILAAL  130 (243)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCCTT--HHHHHHHT
T ss_pred             cccccHHHHHHhhhcccccceecccccc--hhhhhhhh
Confidence            4689999999999 57788999998754  56666654

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=92.13  E-value=0.29  Score=30.66  Aligned_cols=16  Identities=44%  Similarity=0.592  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         4 ~k~i~fDlDGTL~~~~   19 (207)
T 2go7_A            4 KTAFIWDLDGTLLDSY   19 (207)
T ss_dssp             CCEEEECTBTTTEECH
T ss_pred             ccEEEEeCCCcccccH
Confidence            3578999999999875

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=92.12  E-value=0.24  Score=33.73  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=13.5

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus        36 k~iifDlDGTLlds~   50 (275)
T 2qlt_A           36 NAALFDVDGTIIISQ   50 (275)
T ss_dssp             SEEEECCBTTTEECH
T ss_pred             CEEEECCCCCCCCCH
Confidence            578999999999985

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=92.09  E-value=0.27  Score=31.42  Aligned_cols=16  Identities=25%  Similarity=0.281  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         6 ~k~v~fDlDGTL~d~~   21 (225)
T 3d6j_A            6 YTVYLFDFDYTLADSS   21 (225)
T ss_dssp             CSEEEECCBTTTEECH
T ss_pred             CCEEEEeCCCCCCCCH
Confidence            4689999999999874

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=92.08  E-value=0.044  Score=36.31  Aligned_cols=36  Identities=8%  Similarity=-0.025  Sum_probs=31.0

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHH
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAK   92 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~   92 (97)
                      ....||+.++|+.+. ..+.++|.|++...++..+++
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~  144 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLE  144 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHH
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHH
Confidence            467899999999996 569999999999988877665

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=92.05  E-value=0.036  Score=36.13  Aligned_cols=15  Identities=20%  Similarity=-0.006  Sum_probs=13.4

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         3 k~i~fDlDGTL~d~~   17 (234)
T 3u26_A            3 RAVFFDSLGTLNSVE   17 (234)
T ss_dssp             CEEEECSTTTTBCHH
T ss_pred             cEEEEcCCCcccccc
Confidence            578999999999875

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=92.00  E-value=0.048  Score=35.98  Aligned_cols=15  Identities=33%  Similarity=0.563  Sum_probs=13.3

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         4 k~viFDlDGTL~d~~   18 (222)
T 2nyv_A            4 RVILFDLDGTLIDSA   18 (222)
T ss_dssp             CEEEECTBTTTEECH
T ss_pred             CEEEECCCCcCCCCH
Confidence            478999999999885

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=91.99  E-value=0.27  Score=32.70  Aligned_cols=16  Identities=25%  Similarity=0.146  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        14 ~k~i~fDlDGTL~d~~   29 (277)
T 3iru_A           14 VEALILDWAGTTIDFG   29 (277)
T ss_dssp             CCEEEEESBTTTBSTT
T ss_pred             CcEEEEcCCCCcccCC
Confidence            4689999999999963

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=91.94  E-value=0.036  Score=36.43  Aligned_cols=16  Identities=13%  Similarity=-0.012  Sum_probs=13.9

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        15 ~k~i~fDlDGTL~d~~   30 (254)
T 3umg_A           15 VRAVLFDTFGTVVDWR   30 (254)
T ss_dssp             CCEEEECCBTTTBCHH
T ss_pred             ceEEEEeCCCceecCc
Confidence            4679999999999874

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=91.91  E-value=0.041  Score=35.82  Aligned_cols=17  Identities=35%  Similarity=0.405  Sum_probs=14.2

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +.+.+++|+||||+.+.
T Consensus         4 ~~k~i~fDlDGTL~d~~   20 (240)
T 3qnm_A            4 KYKNLFFDLDDTIWAFS   20 (240)
T ss_dssp             CCSEEEECCBTTTBCHH
T ss_pred             CceEEEEcCCCCCcCch
Confidence            35689999999999874

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=91.88  E-value=0.33  Score=31.28  Aligned_cols=15  Identities=27%  Similarity=0.220  Sum_probs=13.2

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         5 k~i~fDlDGTL~d~~   19 (235)
T 2om6_A            5 KLVTFDVWNTLLDLN   19 (235)
T ss_dssp             CEEEECCBTTTBCHH
T ss_pred             eEEEEeCCCCCCCcc
Confidence            578999999999864

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=91.87  E-value=0.049  Score=36.42  Aligned_cols=16  Identities=25%  Similarity=0.424  Sum_probs=13.5

Q ss_pred             CCceEEEeCCCeeeee
Q 040601            6 KKLHLVLDLDHTLLHA   21 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs   21 (97)
                      .+..+++|+||||+.+
T Consensus         5 ~~k~viFD~DGTL~d~   20 (236)
T 2fea_A            5 RKPFIICDFDGTITMN   20 (236)
T ss_dssp             CCEEEEECCTTTTBSS
T ss_pred             CCcEEEEeCCCCCCcc
Confidence            4568999999999965

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=91.49  E-value=0.21  Score=35.25  Aligned_cols=39  Identities=10%  Similarity=0.272  Sum_probs=34.6

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+. ..+.++|.|++...+++.+++.+.
T Consensus       177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lg  216 (335)
T 3n28_A          177 LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLS  216 (335)
T ss_dssp             CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHT
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcC
Confidence            458999999999995 579999999999999999987764

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=91.37  E-value=0.27  Score=31.22  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=15.2

Q ss_pred             CCCCceEEEeCCCeeeeee
Q 040601            4 RQKKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~   22 (97)
                      +++.+.+++||||||+.+.
T Consensus         2 ~~~~k~i~fDlDGTL~d~~   20 (211)
T 1l7m_A            2 EKKKKLILFDFDSTLVNNE   20 (211)
T ss_dssp             -CCCEEEEEECCCCCBSSC
T ss_pred             CcCCcEEEEeCCCCCCCcc
Confidence            3455789999999999984

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=91.28  E-value=0.048  Score=36.56  Aligned_cols=15  Identities=27%  Similarity=0.248  Sum_probs=13.2

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         3 k~viFDlDGTL~d~~   17 (253)
T 1qq5_A            3 KAVVFDAYGTLFDVQ   17 (253)
T ss_dssp             CEEEECTBTTTBCTT
T ss_pred             cEEEEeCCCCCCccH
Confidence            578999999999875

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=91.19  E-value=0.07  Score=36.14  Aligned_cols=37  Identities=11%  Similarity=-0.052  Sum_probs=30.6

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+. ..+.++|.|++.+. +..+++.+
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~-~~~~l~~~  142 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDRR-LEGILGGL  142 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCTT-HHHHHHHT
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcHH-HHHHHHhC
Confidence            568999999999996 56999999998875 57777654

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=91.13  E-value=0.21  Score=31.87  Aligned_cols=17  Identities=18%  Similarity=0.505  Sum_probs=14.5

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      ++.+++|+||||+.|..
T Consensus         4 ~~~viFD~DGtL~Ds~~   20 (180)
T 3bwv_A            4 RQRIAIDMDEVLADTLG   20 (180)
T ss_dssp             CCEEEEETBTTTBCHHH
T ss_pred             ccEEEEeCCCcccccHH
Confidence            36799999999999854

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=91.12  E-value=0.19  Score=34.69  Aligned_cols=35  Identities=9%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.   .+.++|.||+.+..++.+++..
T Consensus       124 ~~~~pgv~e~L~~---g~~l~i~Tn~~~~~~~~~l~~~  158 (253)
T 2g80_A          124 APVYADAIDFIKR---KKRVFIYSSGSVKAQKLLFGYV  158 (253)
T ss_dssp             BCCCHHHHHHHHH---CSCEEEECSSCHHHHHHHHHSB
T ss_pred             CCCCCCHHHHHHc---CCEEEEEeCCCHHHHHHHHHhh
Confidence            4678999999999   8999999999999999988754

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=90.48  E-value=0.077  Score=37.64  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +..+|++.++|+.+.+.+.+.++|.+...|+..+.+.+
T Consensus       102 ~~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~~  139 (332)
T 1y8a_A          102 AKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMI  139 (332)
T ss_dssp             CCBCTTHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEECCceEEEcccchhh
Confidence            35689999999999668889999999989998877654

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=90.34  E-value=0.53  Score=31.67  Aligned_cols=15  Identities=33%  Similarity=0.324  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         2 k~iiFDlDGTL~d~~   16 (263)
T 3k1z_A            2 RLLTWDVKDTLLRLR   16 (263)
T ss_dssp             CEEEECCBTTTEEES
T ss_pred             cEEEEcCCCceeCCC
Confidence            478999999999975

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=90.22  E-value=0.067  Score=33.88  Aligned_cols=16  Identities=31%  Similarity=0.299  Sum_probs=12.5

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      |+.+++|+||||+.+.
T Consensus         9 k~ivifDlDGTL~d~~   24 (201)
T 4ap9_A            9 KKVAVIDIEGTLTDFE   24 (201)
T ss_dssp             SCEEEEECBTTTBCCC
T ss_pred             ceeEEecccCCCcchH
Confidence            4555599999999764

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=90.01  E-value=0.32  Score=31.74  Aligned_cols=17  Identities=18%  Similarity=0.413  Sum_probs=14.3

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus        22 ~~k~i~fDlDGTL~d~~   38 (247)
T 3dv9_A           22 DLKAVLFDMDGVLFDSM   38 (247)
T ss_dssp             CCCEEEEESBTTTBCCH
T ss_pred             CCCEEEECCCCccCcCH
Confidence            35689999999999874

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=89.46  E-value=0.059  Score=37.21  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=34.1

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+|||+.++|+.+. ..+.++|.|++.+..++.+++.+.
T Consensus       135 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~g  174 (263)
T 2yj3_A          135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELN  174 (263)
Confidence            358999999999995 569999999999999999987653

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=89.61  E-value=0.61  Score=29.20  Aligned_cols=16  Identities=31%  Similarity=0.329  Sum_probs=13.7

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         6 ~k~i~fDlDGTL~d~~   21 (190)
T 2fi1_A            6 YHDYIWDLGGTLLDNY   21 (190)
T ss_dssp             CSEEEECTBTTTBCHH
T ss_pred             ccEEEEeCCCCcCCCH
Confidence            4678999999999874

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=89.59  E-value=0.082  Score=36.55  Aligned_cols=15  Identities=20%  Similarity=0.270  Sum_probs=13.5

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++||||||+.+.
T Consensus        32 kaviFDlDGTLvDs~   46 (253)
T 2g80_A           32 STYLLDIEGTVCPIS   46 (253)
T ss_dssp             SEEEECCBTTTBCTH
T ss_pred             cEEEEcCCCCccccc
Confidence            589999999999984

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=89.55  E-value=0.12  Score=33.39  Aligned_cols=13  Identities=31%  Similarity=0.322  Sum_probs=11.7

Q ss_pred             ceEEEeCCCeeee
Q 040601            8 LHLVLDLDHTLLH   20 (97)
Q Consensus         8 ~~LVLDLDeTLvh   20 (97)
                      ..+++|+||||+.
T Consensus         3 k~viFD~DGTL~d   15 (206)
T 1rku_A            3 EIACLDLEGVLVP   15 (206)
T ss_dssp             EEEEEESBTTTBC
T ss_pred             cEEEEccCCcchh
Confidence            4689999999997

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=89.29  E-value=0.087  Score=36.19  Aligned_cols=16  Identities=19%  Similarity=0.221  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      -..++|||||||+.+.
T Consensus        10 ikaviFDlDGTL~ds~   25 (261)
T 1yns_A           10 VTVILLDIEGTTTPIA   25 (261)
T ss_dssp             CCEEEECCBTTTBCHH
T ss_pred             CCEEEEecCCCccchh
Confidence            4689999999999874

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=88.76  E-value=0.41  Score=31.49  Aligned_cols=16  Identities=19%  Similarity=0.445  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus        24 ~k~i~fDlDGTL~d~~   39 (243)
T 3qxg_A           24 LKAVLFDMDGVLFNSM   39 (243)
T ss_dssp             CCEEEECSBTTTBCCH
T ss_pred             CCEEEEcCCCCCCCCH
Confidence            4689999999999874

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=88.55  E-value=0.41  Score=31.59  Aligned_cols=17  Identities=35%  Similarity=0.552  Sum_probs=14.3

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      ..+.+++|+||||+.+.
T Consensus        29 ~ik~i~fDlDGTL~d~~   45 (250)
T 3l5k_A           29 PVTHLIFDMDGLLLDTE   45 (250)
T ss_dssp             CCSEEEEETBTTTBCHH
T ss_pred             CCcEEEEcCCCCcCCCH
Confidence            45789999999999873

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=88.49  E-value=0.5  Score=30.61  Aligned_cols=15  Identities=20%  Similarity=0.414  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||+.+.
T Consensus         3 k~i~fDlDGTL~d~~   17 (233)
T 3nas_A            3 KAVIFDLDGVITDTA   17 (233)
T ss_dssp             CEEEECSBTTTBCHH
T ss_pred             cEEEECCCCCcCCCH
Confidence            578999999999874

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=87.59  E-value=0.59  Score=30.03  Aligned_cols=16  Identities=19%  Similarity=0.223  Sum_probs=13.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      .+.+++|+||||+.+.
T Consensus         4 ik~i~fDlDGTL~d~~   19 (229)
T 2fdr_A            4 FDLIIFDCDGVLVDSE   19 (229)
T ss_dssp             CSEEEECSBTTTBCCH
T ss_pred             ccEEEEcCCCCcCccH
Confidence            3689999999999875

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=87.19  E-value=0.86  Score=30.23  Aligned_cols=17  Identities=6%  Similarity=-0.130  Sum_probs=14.1

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      .+.+++||||||+.+..
T Consensus         6 ik~i~fDlDGTLld~~~   22 (267)
T 1swv_A            6 IEAVIFAWAGTTVDYGC   22 (267)
T ss_dssp             CCEEEECSBTTTBSTTC
T ss_pred             ceEEEEecCCCEEeCCC
Confidence            35799999999999743

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=87.05  E-value=0.21  Score=34.58  Aligned_cols=16  Identities=19%  Similarity=0.208  Sum_probs=13.9

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      .++++|+||||+.+..
T Consensus        33 ~~viFD~dGTL~ds~~   48 (287)
T 3a1c_A           33 TAVIFDKTGTLTKGKP   48 (287)
T ss_dssp             CEEEEECCCCCBCSCC
T ss_pred             CEEEEeCCCCCcCCCE
Confidence            4799999999999854

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=87.02  E-value=0.62  Score=33.64  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=33.8

Q ss_pred             EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .+.|+..+.++.+ ++.++++|.|+|....+++++..+
T Consensus       143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~  180 (327)
T 4as2_A          143 RVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADP  180 (327)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCG
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhc
Confidence            6899999999999 578999999999999999998753

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=83.97  E-value=0.87  Score=35.54  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=36.1

Q ss_pred             EEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           54 LFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        54 ~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ..||.+-|.+.++|+++ +.. .+.+-||+...|++.+++.+
T Consensus       242 ekYv~kdp~l~~~L~~Lr~~G-KlfLiTNS~~~yv~~~m~yl  282 (555)
T 2jc9_A          242 EKYVVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDKIMTYL  282 (555)
T ss_dssp             HHHBCCCTHHHHHHHHHHHHS-EEEEECSSCHHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHcC-CEEEEeCCChHHHHHHHHHh
Confidence            34888899999999999 466 99999999999999999988

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=82.68  E-value=1.8  Score=31.25  Aligned_cols=34  Identities=12%  Similarity=-0.023  Sum_probs=27.1

Q ss_pred             EEecchHHHHHHHHhh-cceEEEEeCC------chHHHHHH
Q 040601           57 VKLRPYIRKFLKEASK-MYEIYLCTTG------IRSYAVMM   90 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~-~~ei~i~T~~------~~~YA~~v   90 (97)
                      +...||+.++|+.|.+ .+.++|.|++      .+......
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~  139 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQL  139 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHH
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHH
Confidence            4688999999999964 5999999998      55554443

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=81.11  E-value=0.48  Score=34.27  Aligned_cols=15  Identities=33%  Similarity=0.275  Sum_probs=11.8

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      .+.+++|+||||+.+
T Consensus         3 ~k~viFD~DGTL~~~   17 (555)
T 3i28_A            3 LRAAVFDLDGVLALP   17 (555)
T ss_dssp             -CEEEECTBTTTEES
T ss_pred             eEEEEEecCCeeecc
Confidence            357999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	97
d1ta0a_	181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	4e-13

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 4e-13
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 4  RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYI 63
             K+ +V+DLD TL+H+            +     +                V  RP++
Sbjct: 12 DSDKICVVIDLDETLVHS-----------SFKPVNNADFIIPVEIDGVVHQVYVLKRPHV 60

Query: 64 RKFLKEASKMYEIYLCTTGIRSYAVMMAKLLDLK 97
           +FL+   +++E  L T  +  YA  +A LLD  
Sbjct: 61 DEFLQRMGELFECVLFTASLAKYADPVADLLDKW 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	99.95
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	98.75
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	98.68
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	98.31
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	98.12
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	97.87
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	97.86
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	97.81
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	97.69
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	97.67
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	97.53
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	97.44
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	97.36
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	97.35
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	97.26
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	97.21
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	97.17
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	97.15
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	97.09
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	97.0
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	96.96
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	96.95
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	96.95
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	96.87
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	96.86
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	96.83
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	96.73
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	96.71
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	96.65
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	96.29
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	96.07
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	95.9
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	95.73
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	95.7
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	95.59
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	95.26
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	95.23
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	94.98
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	94.89
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	94.74
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	94.58
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	94.54
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	94.5
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	94.45
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	94.15
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	93.87
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	93.53
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	93.48
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	93.21
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	92.83
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	92.73
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	92.32
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	92.18
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	92.06
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	91.85
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	91.62
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	91.62
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	91.31
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	90.53
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	89.8
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	88.87
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	88.27
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	87.32
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	87.14
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	86.81
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	86.61
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	86.14
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	84.93
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	82.8
d1y8aa1	308	Hypothetical protein AF1437 {Archaeon Archaeoglobu	80.29

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=165.74  Aligned_cols=83  Identities=27%  Similarity=0.353  Sum_probs=66.0

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCc
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGI   83 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~   83 (97)
                      +++|++||||||||||||+..+.....   + .       ....+......++|++|||+++||+.++++|||+|||+|+
T Consensus        12 ~~~k~~LVLDLDeTLihs~~~~~~~~~---~-~-------~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~yei~I~Ta~~   80 (181)
T d1ta0a_          12 DSDKICVVIDLDETLVHSSFKPVNNAD---F-I-------IPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASL   80 (181)
T ss_dssp             GTTSCEEEECCBTTTEEEESSCCTTCS---E-E-------EEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSC
T ss_pred             cCCCeEEEEeCCCCEEccccCCCCCcc---c-e-------eeecccceeeeeEEecCCCHHHHHHHHHhceEEEEEcCCc
Confidence            468999999999999999876531111   0 0       0111122246789999999999999999999999999999


Q ss_pred             hHHHHHHHHhhCCC
Q 040601           84 RSYAVMMAKLLDLK   97 (97)
Q Consensus        84 ~~YA~~v~~~LDP~   97 (97)
                      ++||++|++.|||+
T Consensus        81 ~~YA~~il~~ldp~   94 (181)
T d1ta0a_          81 AKYADPVADLLDKW   94 (181)
T ss_dssp             HHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999999995

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=5.6e-09  Score=66.98  Aligned_cols=82  Identities=22%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             CCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCC
Q 040601            4 RQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTG   82 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~   82 (97)
                      ++-++.+|+||||||+.+.......+.    +..    .......  ......+.++||+.++|+.| ++.+.++|.|++
T Consensus         2 ~~~pK~viFDlDGTL~d~~~~~~~~~~----~~~----~~~~~~~--d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~   71 (164)
T d1u7pa_           2 TRLPKLAVFDLDYTLWPFWVDTHVDPP----FHK----SSDGTVR--DRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRT   71 (164)
T ss_dssp             CCCCSEEEECCBTTTBSSCTTTTCCSC----EEE----CTTSCEE--ETTCCEECCCTTHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCCEEEEcCCCcccCCccccccCcc----HhH----HhcchHh--hhhccccccchHHHHHHHHHHHCCCcEEEEecc
Confidence            445788999999999876543221111    000    0000111  11223578999999999999 467999999976


Q ss_pred             c-hHHHHHHHHhhC
Q 040601           83 I-RSYAVMMAKLLD   95 (97)
Q Consensus        83 ~-~~YA~~v~~~LD   95 (97)
                      . ..++..+++.+.
T Consensus        72 ~~~~~~~~~l~~~~   85 (164)
T d1u7pa_          72 SEIQGANQLLELFD   85 (164)
T ss_dssp             SCHHHHHHHHHHTT
T ss_pred             ccchhhccchhccc
Confidence            5 467888887765

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.68  E-value=9.2e-10  Score=68.99  Aligned_cols=67  Identities=15%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      .+++++|+|+||||+.+...... .+ ... .                   -....||+.++|+.+. +.|+|++.|+-.
T Consensus         5 ~kpk~vifDiDgTL~~~~~~~~~-~~-~~~-~-------------------~~~~~p~v~~~l~~l~~~G~~Iii~T~R~   62 (149)
T d1ltqa1           5 GKPKAVIFDVDGTLAKMNGRGPY-DL-EKC-D-------------------TDVINPMVVELSKMYALMGYQIVVVSGRE   62 (149)
T ss_dssp             TSCEEEEEETBTTTBCCSSCCTT-CG-GGG-G-------------------GCCBCHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCcEEEEEcCCCcEeCCCCCcC-Cc-ccc-c-------------------cCccCHHHHHHHHHHHhccCeEEEEecCc
Confidence            46789999999999988654321 11 000 0                   1236799999999995 699999999987


Q ss_pred             hHHHHHHHHh
Q 040601           84 RSYAVMMAKL   93 (97)
Q Consensus        84 ~~YA~~v~~~   93 (97)
                      ..+++...+.
T Consensus        63 ~~~~~~t~~~   72 (149)
T d1ltqa1          63 SGTKEDPTKY   72 (149)
T ss_dssp             CCCSSSTTHH
T ss_pred             HHHHHHHHHH
Confidence            6665544433

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=98.31  E-value=3.9e-08  Score=64.60  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=36.6

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhCC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLDL   96 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LDP   96 (97)
                      .+.++||+.++|+.+ ++.+.++|.|++.+.+++++++.+.+
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l~~l~~  114 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVE  114 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSC
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcchhhhHHHHHHHcCC
Confidence            356899999999999 67899999999999999999987754

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.12  E-value=1.4e-06  Score=54.13  Aligned_cols=58  Identities=12%  Similarity=0.118  Sum_probs=44.8

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCchHH
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSY   86 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~Y   86 (97)
                      +++++|+||||.+... +    .                         +.+..|++.++|+.+ .+.+.|++||+-...+
T Consensus         1 mti~vDiDGTl~~~~~-~----~-------------------------~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~   50 (122)
T d2obba1           1 MTIAVDFDGTIVEHRY-P----R-------------------------IGEEIPFAVETLKLLQQEKHRLILWSVREGEL   50 (122)
T ss_dssp             CEEEECCBTTTBCSCT-T----S-------------------------CCCBCTTHHHHHHHHHHTTCEEEECCSCCHHH
T ss_pred             CEEEEEcCCCcCCCCC-C----c-------------------------cccccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence            4799999999965321 1    0                         113578999999999 5789999999999988


Q ss_pred             HHHHHHhhC
Q 040601           87 AVMMAKLLD   95 (97)
Q Consensus        87 A~~v~~~LD   95 (97)
                      .+...+.|.
T Consensus        51 ~~~t~~wL~   59 (122)
T d2obba1          51 LDEAIEWCR   59 (122)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            888777654

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=97.87  E-value=1e-05  Score=53.83  Aligned_cols=53  Identities=21%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             CCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCc
Q 040601            5 QKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGI   83 (97)
Q Consensus         5 ~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~   83 (97)
                      ++-+.|.||+||||++......  .               ..         -+++.||+.+.|++| ++.|.++|.||.+
T Consensus        21 ~~~~Aif~DrDGtl~~~~~y~~--~---------------~~---------~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~   74 (209)
T d2o2xa1          21 PHLPALFLDRDGTINVDTDYPS--D---------------PA---------EIVLRPQMLPAIATANRAGIPVVVVTNQS   74 (209)
T ss_dssp             SSCCCEEECSBTTTBCCCSCTT--C---------------GG---------GCCBCGGGHHHHHHHHHHTCCEEEEEECH
T ss_pred             CCCCEEEEeCCCCeECCCCCCC--C---------------HH---------HeEecccHHHHHHHHHhhCCeEEEecccc
Confidence            3446789999999998543210  0               00         023679999999999 4689999999854

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=97.86  E-value=1.2e-05  Score=50.08  Aligned_cols=48  Identities=29%  Similarity=0.252  Sum_probs=36.7

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHH-hhcceEEEEeCCc
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEA-SKMYEIYLCTTGI   83 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~   83 (97)
                      +++++||||||.+....   ...                         .+...|++.++++.+ ++.+.|+|||+-.
T Consensus         2 K~i~~DiDGTI~~~~~~---~y~-------------------------~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~   50 (124)
T d1xpja_           2 KKLIVDLDGTLTQANTS---DYR-------------------------NVLPRLDVIEQLREYHQLGFEIVISTARN   50 (124)
T ss_dssp             CEEEECSTTTTBCCCCS---CGG-------------------------GCCBCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CEEEEeCCCCeECCCCC---CcC-------------------------ccCcCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            47999999999765321   011                         124689999999999 7899999999984

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=1.2e-05  Score=53.35  Aligned_cols=59  Identities=22%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             cCCCCceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeC
Q 040601            3 YRQKKLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTT   81 (97)
Q Consensus         3 l~~~k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~   81 (97)
                      ++.+++.++||+||||+..........              +..        =+..+.|++.+.|+.++ +.|.++|.||
T Consensus        17 ~~~~~Kia~fDrDGtLik~~~~~~~~~--------------~~~--------d~~~l~~~v~~~i~~L~~~gy~iiIvTN   74 (195)
T d1yj5a1          17 VKPQGKVAAFDLDGTLITTRSGKVFPT--------------SPS--------DWRILYPEIPKKLQELAAEGYKLVIFTN   74 (195)
T ss_dssp             CCCCSCEEEECSBTTTEECSSSCSSCS--------------STT--------CCEESCTTHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCcCcEEEEECCCceEeeCCCCcCCC--------------Chh--------hceeccCCHHHHHHHHHhCCcEEEEecC
Confidence            456778999999999998743211000              000        04457899999999995 6899999999


Q ss_pred             Cc
Q 040601           82 GI   83 (97)
Q Consensus        82 ~~   83 (97)
                      .+
T Consensus        75 Q~   76 (195)
T d1yj5a1          75 QM   76 (195)
T ss_dssp             CH
T ss_pred             cc
Confidence            64

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.5e-05  Score=50.95  Aligned_cols=54  Identities=20%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             CceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            7 KLHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      |+.++||.||||+.......  ..            ..   +  .    .+.+.||+.+.|+.+. +.|.++|+|+.+
T Consensus         2 ~K~i~~D~DGtL~~~~~~~~--~~------------~~---~--~----~~~~~pgv~e~L~~L~~~g~~l~i~TNq~   56 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSDF--QV------------DR---F--D----KLAFEPGVIPQLLKLQKAGYKLVMITNQD   56 (161)
T ss_dssp             CEEEEECCBTTTBCCC--CC--CC------------CS---G--G----GCCBCTTHHHHHHHHHHTTEEEEEEEECT
T ss_pred             CcEEEEeCCCCeEeeCCCCC--cc------------CC---H--H----HceECccHHHHHHHHHHcCCceeeecccc
Confidence            67899999999997532210  00            00   0  0    1357899999999995 679999999964

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.8e-05  Score=50.01  Aligned_cols=17  Identities=24%  Similarity=0.198  Sum_probs=14.1

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +++.+++||||||+++.
T Consensus         2 ~~kl~~fDlDGTLl~~~   18 (243)
T d2amya1           2 GPALCLFDVDGTLTAPR   18 (243)
T ss_dssp             CSEEEEEESBTTTBCTT
T ss_pred             CCEEEEEcCcCCeeCCC
Confidence            56778889999999763

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=4.1e-05  Score=49.17  Aligned_cols=51  Identities=14%  Similarity=0.062  Sum_probs=36.5

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCch
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIR   84 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~   84 (97)
                      +.|+||+||||+.-....  ...               .         -+++-||+.+.|+.|. +.|.++|.|+.+.
T Consensus         3 ~Av~~DrDGtl~~~~~y~--~~~---------------~---------~~~~~~gv~e~l~~L~~~g~~~~ivTNq~~   54 (182)
T d2gmwa1           3 PAIFLDRDGTINVDHGYV--HEI---------------D---------NFEFIDGVIDAMRELKKMGFALVVVTNQSG   54 (182)
T ss_dssp             CEEEECSBTTTBCCCSSC--CSG---------------G---------GCCBCTTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred             CEEEEeCCCCccCCCCCC--CCH---------------H---------HeeECCCHHHHHHHHhhcCchhhhhhccch
Confidence            468999999998642211  000               0         0236699999999995 6799999999864

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.44  E-value=1.6e-05  Score=50.31  Aligned_cols=39  Identities=13%  Similarity=0.151  Sum_probs=33.2

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....+|+.++++.+ .+.+.+++.|++...++........
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLG  113 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhccc
Confidence            46789999999999 4679999999999999988877654

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.00016  Score=46.11  Aligned_cols=17  Identities=41%  Similarity=0.487  Sum_probs=13.3

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +|..++.||||||+...
T Consensus         3 ~~~li~~DlDGTLl~~~   19 (232)
T d1xvia_           3 QPLLVFSDLDGTLLDSH   19 (232)
T ss_dssp             CCEEEEEECTTTTSCSS
T ss_pred             CCEEEEEECCCCccCCc
Confidence            45667779999999754

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0001  Score=49.05  Aligned_cols=14  Identities=29%  Similarity=0.615  Sum_probs=12.2

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.+++||||||+++
T Consensus         4 k~VifDlDGTL~~~   17 (250)
T d2c4na1           4 KNVICDIDGVLMHD   17 (250)
T ss_dssp             CEEEEECBTTTEET
T ss_pred             CEEEEECCCeeEEC
Confidence            57899999999865

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00015  Score=47.92  Aligned_cols=53  Identities=21%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCchHH
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSY   86 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~Y   86 (97)
                      +.+++||||||+++...  ++                                |...+.|+++. +...+++.|..+...
T Consensus         5 Kli~~DlDGTL~~~~~~--i~--------------------------------~~~~~al~~L~~~gi~v~i~TGR~~~~   50 (271)
T d1rkqa_           5 KLIAIDMDGTLLLPDHT--IS--------------------------------PAVKNAIAAARARGVNVVLTTGRPYAG   50 (271)
T ss_dssp             CEEEECCCCCCSCTTSC--CC--------------------------------HHHHHHHHHHHHTTCEEEEECSSCGGG
T ss_pred             eEEEEeCCccccCCCCc--cC--------------------------------HHHHHHHHHHHHCCCEEEEECCCCHHH
Confidence            45999999999875321  22                                33455566663 446666666666666


Q ss_pred             HHHHHHhh
Q 040601           87 AVMMAKLL   94 (97)
Q Consensus        87 A~~v~~~L   94 (97)
                      +..+++.+
T Consensus        51 ~~~~~~~l   58 (271)
T d1rkqa_          51 VHNYLKEL   58 (271)
T ss_dssp             THHHHHHT
T ss_pred             HHHHHHHh
Confidence            66555543

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=97.21  E-value=0.00017  Score=47.97  Aligned_cols=15  Identities=27%  Similarity=0.397  Sum_probs=12.7

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+++.
T Consensus         3 k~vlFDlDGTL~~~~   17 (253)
T d1wvia_           3 KGYLIDLDGTIYKGK   17 (253)
T ss_dssp             CEEEEECBTTTEETT
T ss_pred             CEEEEcCcCceEECC
Confidence            468999999999863

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=0.00048  Score=43.83  Aligned_cols=15  Identities=20%  Similarity=0.277  Sum_probs=12.7

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+++.
T Consensus         3 K~i~~D~DGTL~~~~   17 (230)
T d1wr8a_           3 KAISIDIDGTITYPN   17 (230)
T ss_dssp             CEEEEESTTTTBCTT
T ss_pred             eEEEEecCCCCcCCC
Confidence            578999999999753

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00024  Score=47.15  Aligned_cols=15  Identities=27%  Similarity=0.326  Sum_probs=12.6

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      ..+++||||||+++.
T Consensus         8 k~vlFDlDGTL~~~~   22 (261)
T d1vjra_           8 ELFILDMDGTFYLDD   22 (261)
T ss_dssp             CEEEECCBTTTEETT
T ss_pred             CEEEEeCCCeeEECC
Confidence            578999999999763

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=0.00056  Score=45.26  Aligned_cols=15  Identities=40%  Similarity=0.552  Sum_probs=12.6

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++||||||++..
T Consensus         2 Kli~~DlDGTLl~~~   16 (285)
T d1nrwa_           2 KLIAIDLDGTLLNSK   16 (285)
T ss_dssp             CEEEEECCCCCSCTT
T ss_pred             eEEEEECCccccCCC
Confidence            368999999999764

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=97.00  E-value=0.0005  Score=45.20  Aligned_cols=33  Identities=21%  Similarity=0.132  Sum_probs=19.1

Q ss_pred             chHHHHHHHH-hhcceEEEEeCCchHHHHHHHHh
Q 040601           61 PYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKL   93 (97)
Q Consensus        61 P~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~   93 (97)
                      |...+.|+++ .+...+++.|.-+...+..++..
T Consensus        31 ~~~~~al~~l~~~Gi~v~i~TGR~~~~~~~~~~~   64 (283)
T d2b30a1          31 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGE   64 (283)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            3344555555 35566667666666666665543

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00083  Score=44.45  Aligned_cols=16  Identities=44%  Similarity=0.426  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeeec
Q 040601            8 LHLVLDLDHTLLHAVD   23 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~   23 (97)
                      +.+++||||||+++..
T Consensus         3 Kli~~DlDGTL~~~~~   18 (267)
T d1nf2a_           3 RVFVFDLDGTLLNDNL   18 (267)
T ss_dssp             CEEEEECCCCCSCTTS
T ss_pred             EEEEEeCCccccCCcC
Confidence            3689999999998643

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.95  E-value=0.00048  Score=44.56  Aligned_cols=15  Identities=20%  Similarity=0.169  Sum_probs=12.6

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         4 Kli~~D~DGTL~~~~   18 (225)
T d1l6ra_           4 RLAAIDVDGNLTDRD   18 (225)
T ss_dssp             CEEEEEHHHHSBCTT
T ss_pred             EEEEEecCCCCcCCC
Confidence            578999999999653

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.95  E-value=0.00039  Score=46.01  Aligned_cols=41  Identities=20%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             ceEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHh-hcceEEEEeCCc
Q 040601            8 LHLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEAS-KMYEIYLCTTGI   83 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls-~~~ei~i~T~~~   83 (97)
                      +.+++||||||+.....                                  . |++.++++.+. ....+++.|+++
T Consensus         3 k~v~fDlDGTL~~~~~~----------------------------------i-~~a~~~i~~l~~~g~~~~~~Tn~s   44 (253)
T d1yv9a1           3 QGYLIDLDGTIYLGKEP----------------------------------I-PAGKRFVERLQEKDLPFLFVTNNT   44 (253)
T ss_dssp             CEEEECCBTTTEETTEE----------------------------------C-HHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEcCCCccEeCCCc----------------------------------C-ccHHHHHHHHHHCCCCEEEEeCCC
Confidence            46899999999765220                                  2 56667777773 456777777644

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00075  Score=42.80  Aligned_cols=14  Identities=43%  Similarity=0.437  Sum_probs=10.6

Q ss_pred             eEE-EeCCCeeeeee
Q 040601            9 HLV-LDLDHTLLHAV   22 (97)
Q Consensus         9 ~LV-LDLDeTLvhs~   22 (97)
                      .|+ +||||||+...
T Consensus         2 ~i~lFDlDGTLl~~~   16 (244)
T d2fuea1           2 VLCLFDVDGTLTPAR   16 (244)
T ss_dssp             EEEEEESBTTTBSTT
T ss_pred             EEEEEccccCccCCC
Confidence            345 59999999764

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.86  E-value=0.00092  Score=42.88  Aligned_cols=14  Identities=36%  Similarity=0.579  Sum_probs=12.2

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.+++||||||++.
T Consensus         3 Kli~~DlDGTLl~~   16 (243)
T d1wzca1           3 RLIFLDIDKTLIPG   16 (243)
T ss_dssp             EEEEECCBTTTBSS
T ss_pred             EEEEEeCCCCCCCC
Confidence            67899999999964

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00038  Score=45.90  Aligned_cols=14  Identities=36%  Similarity=0.553  Sum_probs=11.9

Q ss_pred             eEEEeCCCeeeeee
Q 040601            9 HLVLDLDHTLLHAV   22 (97)
Q Consensus         9 ~LVLDLDeTLvhs~   22 (97)
                      .+++|+||||+.+.
T Consensus         4 li~~DlDGTLl~~~   17 (269)
T d1rlma_           4 VIVTDMDGTFLNDA   17 (269)
T ss_dssp             EEEECCCCCCSCTT
T ss_pred             EEEEeCCccCcCCC
Confidence            58899999999754

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.73  E-value=0.00062  Score=43.18  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=32.5

Q ss_pred             eEEEeCCCeeeeeeccCccchhhHHHHhhhCCCCCCCceeeecceEEEEEecchHHHHHHHHhhcceEEEEeCCchHHHH
Q 040601            9 HLVLDLDHTLLHAVDIDILASKDREYLMKLGSSSSDGDLFKMAGELFLVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAV   88 (97)
Q Consensus         9 ~LVLDLDeTLvhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~   88 (97)
                      .|++|+||||+.....+.   .                          -...|-+.+.|+++.+...++|.|.-+...++
T Consensus         2 Li~~DlDGTL~~~~~~~~---~--------------------------~~i~~~~~~~l~~l~~~~~v~i~TGR~~~~l~   52 (229)
T d1u02a_           2 LIFLDYDGTLVPIIMNPE---E--------------------------SYADAGLLSLISDLKERFDTYIVTGRSPEEIS   52 (229)
T ss_dssp             EEEEECBTTTBCCCSCGG---G--------------------------CCCCHHHHHHHHHHHHHSEEEEECSSCHHHHH
T ss_pred             EEEEEecCCCCCCCCChh---h--------------------------CCCCHHHHHHHHHHhhCCCEEEEcCCCHHHhh
Confidence            478999999985433221   0                          01446677777777666667777666655544


Q ss_pred             H
Q 040601           89 M   89 (97)
Q Consensus        89 ~   89 (97)
                      .
T Consensus        53 ~   53 (229)
T d1u02a_          53 R   53 (229)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0002  Score=47.91  Aligned_cols=33  Identities=9%  Similarity=0.122  Sum_probs=25.5

Q ss_pred             ecchHHHHHHHH-hhcceEEEEeCCchHHHHHHH
Q 040601           59 LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMA   91 (97)
Q Consensus        59 ~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~   91 (97)
                      .-||+.+|++.+ ++..+|+.-|+-.+...+...
T Consensus        87 p~pga~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~  120 (209)
T d2b82a1          87 PKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVS  120 (209)
T ss_dssp             ECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHH
T ss_pred             cchhHHHHHHHHHHcCCeEEEEeCCchhhHHHHH
Confidence            458999999999 689999999986655444333

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.65  E-value=0.00082  Score=43.75  Aligned_cols=17  Identities=35%  Similarity=0.517  Sum_probs=13.6

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +|..+++||||||+...
T Consensus         2 ~~~li~~DlDGTL~~~~   18 (244)
T d1s2oa1           2 RQLLLISDLDNTWVGDQ   18 (244)
T ss_dssp             CSEEEEECTBTTTBSCH
T ss_pred             CceEEEEECcccCCCCC
Confidence            56778889999998653

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.29  E-value=0.0032  Score=40.42  Aligned_cols=40  Identities=20%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +...+||+.++|+.+++.+.++|.|++...+++.+++.++
T Consensus        98 ~~~~~p~~~~~L~~l~~~~~i~i~Sn~~~~~~~~~l~~~g  137 (230)
T d1x42a1          98 YGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALG  137 (230)
T ss_dssp             HCCBCTTHHHHHHHHBTTBEEEEEESSCHHHHHHHHHHHT
T ss_pred             hCcccccHHHHHHHhhccCceeeeeccccccchhhhcccc
Confidence            3567899999999998899999999999999999988754

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0026  Score=41.26  Aligned_cols=40  Identities=25%  Similarity=0.406  Sum_probs=35.9

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+.++||+.++++.+ ++++.++|-|++...+++++++.+.
T Consensus        80 ~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lg  120 (217)
T d1nnla_          80 PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLN  120 (217)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             ccccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhC
Confidence            456899999999999 5689999999999999999998764

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0069  Score=38.22  Aligned_cols=38  Identities=13%  Similarity=0.111  Sum_probs=33.7

Q ss_pred             EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...||+.++|+.+ ++.+.++|.|++.+.+++.+++.+.
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~~  126 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFD  126 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             cccchHHHHHHHhhhcccccccccccccccccccccccc
Confidence            4679999999999 5779999999999999999997753

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.73  E-value=0.0038  Score=43.16  Aligned_cols=40  Identities=13%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      -+.+|||+.+|++.| .....++|+|+|-..+++++++.+.
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl~~lg  173 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAG  173 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHHHTT
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHcC
Confidence            467999999999999 5789999999999999999998763

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=95.70  E-value=0.0047  Score=38.93  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=34.9

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +..+||+.++|+.+.+.+.++|.|++.+..++.+++.+.
T Consensus        81 ~~~~~g~~~~L~~l~~~~~~~ivT~~~~~~~~~~l~~~~  119 (207)
T d2hdoa1          81 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYP  119 (207)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSG
T ss_pred             cccccchhhhhhhhccccccccccccccccccccccccc
Confidence            567899999999998889999999999999999987653

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=95.59  E-value=0.012  Score=36.93  Aligned_cols=40  Identities=13%  Similarity=0.192  Sum_probs=35.5

Q ss_pred             EEEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ...+.||+.++|+.|. ..+.++|.|++.+.+++.+++.++
T Consensus        93 ~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l~~~g  133 (224)
T d2hsza1          93 ISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFG  133 (224)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHhccCCcccccccccHHHHHHHHHhcC
Confidence            4568999999999995 569999999999999999998764

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.26  E-value=0.003  Score=39.79  Aligned_cols=40  Identities=40%  Similarity=0.418  Sum_probs=36.3

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .....||+.++|+.+++.+.++|.|++.+.+++.+++.+.
T Consensus        82 ~~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~g  121 (210)
T d2ah5a1          82 EAQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLE  121 (210)
T ss_dssp             SCEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred             cccchhHHHHHHhhhhcccchhhcccccchhhhHHHHhhc
Confidence            4578999999999999999999999999999999998754

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.23  E-value=0.0027  Score=41.66  Aligned_cols=14  Identities=36%  Similarity=0.472  Sum_probs=11.8

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.|++||||||+..
T Consensus         2 k~if~DlDGTL~~~   15 (260)
T d2rbka1           2 KALFFDIDGTLVSF   15 (260)
T ss_dssp             CEEEECSBTTTBCT
T ss_pred             eEEEEECCCCCcCC
Confidence            46899999999964

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.98  E-value=0.016  Score=36.21  Aligned_cols=17  Identities=29%  Similarity=0.425  Sum_probs=14.2

Q ss_pred             CCceEEEeCCCeeeeee
Q 040601            6 KKLHLVLDLDHTLLHAV   22 (97)
Q Consensus         6 ~k~~LVLDLDeTLvhs~   22 (97)
                      +-+++++|+||||++|.
T Consensus         3 ~ik~VifD~DGTL~ds~   19 (210)
T d2ah5a1           3 SITAIFFDLDGTLVDSS   19 (210)
T ss_dssp             TCCEEEECSBTTTEECH
T ss_pred             CCCEEEEeCCCccccCH
Confidence            34679999999999874

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.89  E-value=0.019  Score=35.77  Aligned_cols=38  Identities=26%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +.+.||+.++|+.+. +.+.++|.|++.+ ++..+++.++
T Consensus        81 ~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~~~~~l~~~g  119 (204)
T d2go7a1          81 VVLMPGAREVLAWADESGIQQFIYTHKGN-NAFTILKDLG  119 (204)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHHT
T ss_pred             CcccchHHhhhhcccccccchhhhcccch-hhhhhhhhcc
Confidence            567899999999995 5699999999775 6777877653

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.74  E-value=0.0049  Score=39.36  Aligned_cols=39  Identities=21%  Similarity=0.117  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHhh--cceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEASK--MYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~--~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....||+.++|+.+.+  .+.++|.|++.+..+..+++.++
T Consensus        90 ~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l~~~g  130 (228)
T d2hcfa1          90 ITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPG  130 (228)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTT
T ss_pred             ceecCchHHHHhhhhccccccccccCCCcchhhhhhhhhhc
Confidence            4678999999999964  37899999999999999998765

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.58  E-value=0.027  Score=35.99  Aligned_cols=38  Identities=21%  Similarity=0.172  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....||+.++|+.+++.+.++|.|++....++.+++..
T Consensus       108 ~~~~~~~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~  145 (247)
T d2gfha1         108 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEAC  145 (247)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHH
T ss_pred             CccCccHHHHHHHhhcccceEEeecccchhhhhhhhhc
Confidence            35779999999999999999999999999998887764

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.54  E-value=0.036  Score=35.03  Aligned_cols=17  Identities=29%  Similarity=0.505  Sum_probs=14.2

Q ss_pred             CceEEEeCCCeeeeeec
Q 040601            7 KLHLVLDLDHTLLHAVD   23 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~~   23 (97)
                      |+.+++|+||||+++..
T Consensus         2 ~klviFD~DGTL~d~~~   18 (228)
T d2hcfa1           2 RTLVLFDIDGTLLKVES   18 (228)
T ss_dssp             CEEEEECCBTTTEEECT
T ss_pred             ceEEEEeCCCCcccCHH
Confidence            56689999999999853

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=94.50  E-value=0.014  Score=37.71  Aligned_cols=38  Identities=13%  Similarity=-0.001  Sum_probs=33.9

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.|. +.+.++|.|++.+.+++.+++.+
T Consensus        98 ~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~~  136 (257)
T d1swva_          98 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEA  136 (257)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHH
T ss_pred             CccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHHH
Confidence            468999999999995 56999999999999999998864

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.026  Score=35.38  Aligned_cols=39  Identities=5%  Similarity=0.057  Sum_probs=33.7

Q ss_pred             EEEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           56 LVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        56 ~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....+||+.++|+++ .+.+.++|.|++.+..+..+++.+
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~  164 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHS  164 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTB
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHc
Confidence            345789999999999 467999999999999998887754

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=94.15  E-value=0.0069  Score=38.05  Aligned_cols=15  Identities=33%  Similarity=0.488  Sum_probs=13.1

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+++.
T Consensus         5 k~iiFD~DGTL~Ds~   19 (224)
T d2hsza1           5 KLIGFDLDGTLVNSL   19 (224)
T ss_dssp             SEEEECSBTTTEECH
T ss_pred             CEEEEeCCCCcccCH
Confidence            678999999999874

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.87  E-value=0.0088  Score=37.45  Aligned_cols=16  Identities=44%  Similarity=0.592  Sum_probs=13.6

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      |..+|+|+||||+.+.
T Consensus         1 ~~a~iFD~DGTL~ds~   16 (204)
T d2go7a1           1 KTAFIWDLDGTLLDSY   16 (204)
T ss_dssp             CCEEEECTBTTTEECH
T ss_pred             CEEEEEcCCCcCccCH
Confidence            5678999999999874

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.53  E-value=0.0087  Score=37.81  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...||+.++|+++..  ..+|.|++.+.+++.+++.++
T Consensus        83 ~~~~~~g~~~~L~~l~~--~~~i~t~~~~~~~~~~l~~~~  120 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVG  120 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTT
T ss_pred             ccchhhhHHHHhhhccc--cceeeeecchhhhhhhhcccc
Confidence            35688999999999964  457899999999999998765

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.48  E-value=0.01  Score=36.56  Aligned_cols=40  Identities=8%  Similarity=0.133  Sum_probs=33.2

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+...|+...+.+.+.+.+.+++.+.+....++.+...+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  106 (206)
T d1rkua_          67 TLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLG  106 (206)
T ss_dssp             TCCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTT
T ss_pred             hccccchHHHHHHHhhcCceEEEeccCchHHHHHHHHHhC
Confidence            4567899999999988889999999998888888776553

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=93.21  E-value=0.013  Score=36.82  Aligned_cols=15  Identities=33%  Similarity=0.490  Sum_probs=12.8

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.|.
T Consensus         4 k~viFD~DGTL~ds~   18 (207)
T d2hdoa1           4 QALMFDIDGTLTNSQ   18 (207)
T ss_dssp             SEEEECSBTTTEECH
T ss_pred             cEEEEeCCCCcCcCH
Confidence            568999999999863

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.83  E-value=0.065  Score=37.44  Aligned_cols=38  Identities=13%  Similarity=0.113  Sum_probs=34.2

Q ss_pred             EecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           58 KLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        58 ~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..||++.++|+.| ...+.++|.|...+..|..+++.++
T Consensus       215 ~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~a~~il~~lg  253 (380)
T d1qyia_         215 RPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLG  253 (380)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence            4567999999999 5789999999999999999998874

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.016  Score=35.93  Aligned_cols=29  Identities=10%  Similarity=-0.055  Sum_probs=24.5

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchH
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRS   85 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~   85 (97)
                      ...+|++.++|..+ ++.+.+++.|++...
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~  127 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLD  127 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCC
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchh
Confidence            46899999999999 567899999987654

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=92.32  E-value=0.018  Score=36.03  Aligned_cols=39  Identities=8%  Similarity=0.031  Sum_probs=34.2

Q ss_pred             EEecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ....|++.++|+.+ .+.+.+++.|++...+++.+++...
T Consensus        92 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~  131 (220)
T d1zrna_          92 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAG  131 (220)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTT
T ss_pred             ccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHHhhcc
Confidence            45789999999999 6789999999999999999887643

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=92.18  E-value=0.014  Score=36.79  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=27.4

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      +...||+.++|+.+. ..+.+++.|++.  .+..+++.+
T Consensus        90 ~~~~~g~~~~l~~l~~~~~~i~i~s~~~--~~~~~l~~~  126 (221)
T d1o08a_          90 ADVYPGILQLLKDLRSNKIKIALASASK--NGPFLLERM  126 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCSCT--THHHHHHHT
T ss_pred             ccccCCceeccccccccccceEEEeecc--hhhHHHHhh
Confidence            457899999999994 667788888764  467776654

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.022  Score=35.69  Aligned_cols=14  Identities=29%  Similarity=0.593  Sum_probs=12.5

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.+|+|+||||++|
T Consensus         4 ~a~iFD~DGTL~dt   17 (218)
T d1te2a_           4 LAAIFDMDGLLIDS   17 (218)
T ss_dssp             CEEEECCBTTTBCC
T ss_pred             eEEEECCCCcccCC
Confidence            56899999999986

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.85  E-value=0.02  Score=35.57  Aligned_cols=38  Identities=11%  Similarity=0.031  Sum_probs=29.6

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      ..+.||+.++|+.++ ..+.++|.|++.+ ++..+++.++
T Consensus        78 ~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~-~~~~~l~~~~  116 (187)
T d2fi1a1          78 PILFEGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTS  116 (187)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTT
T ss_pred             CcccchhHHHHHHHHhhhccccccccCcc-chhhhhhhhc
Confidence            356799999999995 5699999998876 4455676654

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.029  Score=33.70  Aligned_cols=36  Identities=14%  Similarity=0.202  Sum_probs=29.6

Q ss_pred             EEEEEecchHHHHHHHH-hhcceEEEEeCCchHHHHH
Q 040601           54 LFLVKLRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVM   89 (97)
Q Consensus        54 ~~~v~~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~   89 (97)
                      ......+|++.+++..+ .+.+.+++.|++....+..
T Consensus        80 ~~~~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~  116 (197)
T d2b0ca1          80 AVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTF  116 (197)
T ss_dssp             TCEEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSC
T ss_pred             HhccccCchhHHHHHHHHhcCCeEEEEeCccHHHHHH
Confidence            44678999999999999 6889999999988765543

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.62  E-value=0.38  Score=28.97  Aligned_cols=37  Identities=14%  Similarity=0.092  Sum_probs=33.5

Q ss_pred             ecchHHHHHHHHh-hcceEEEEeCCchHHHHHHHHhhC
Q 040601           59 LRPYIRKFLKEAS-KMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        59 ~RP~~~~FL~~ls-~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      +||++.+.++.|. ...+++|-|-..++-|..+.+.|.
T Consensus        22 lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~lg   59 (135)
T d2b8ea1          22 LKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN   59 (135)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhhh
Confidence            8999999999995 569999999999999999988764

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.31  E-value=0.025  Score=35.36  Aligned_cols=26  Identities=8%  Similarity=0.029  Sum_probs=22.3

Q ss_pred             EEecchHHHHHHHHh-hcceEEEEeCC
Q 040601           57 VKLRPYIRKFLKEAS-KMYEIYLCTTG   82 (97)
Q Consensus        57 v~~RP~~~~FL~~ls-~~~ei~i~T~~   82 (97)
                      ...+|++.++|+++. +.+.+++.|++
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~  122 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNN  122 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeecc
Confidence            468999999999995 56899999974

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.53  E-value=0.21  Score=30.54  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.2

Q ss_pred             CceEEEeCCCeeeee
Q 040601            7 KLHLVLDLDHTLLHA   21 (97)
Q Consensus         7 k~~LVLDLDeTLvhs   21 (97)
                      -+.+|+|+||||+.+
T Consensus         3 ~k~viFD~DGTL~dt   17 (187)
T d2fi1a1           3 YHDYIWDLGGTLLDN   17 (187)
T ss_dssp             CSEEEECTBTTTBCH
T ss_pred             CCEEEEeCCCCcccC
Confidence            478999999999985

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=0.033  Score=35.72  Aligned_cols=16  Identities=19%  Similarity=0.322  Sum_probs=12.8

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      ...+++|+||||+.+.
T Consensus        10 ~~aV~FD~DGTLi~~e   25 (217)
T d1nnla_          10 ADAVCFDVDSTVIREE   25 (217)
T ss_dssp             CSEEEEETBTTTBSSC
T ss_pred             CCEEEEcCccccCCcc
Confidence            4567899999999763

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.87  E-value=0.055  Score=34.41  Aligned_cols=16  Identities=31%  Similarity=0.505  Sum_probs=13.1

Q ss_pred             CceEEEeCCCeeeeee
Q 040601            7 KLHLVLDLDHTLLHAV   22 (97)
Q Consensus         7 k~~LVLDLDeTLvhs~   22 (97)
                      =+.+++|+||||+++.
T Consensus         6 IKaviFD~dGTL~d~~   21 (247)
T d2gfha1           6 VRAVFFDLDNTLIDTA   21 (247)
T ss_dssp             CCEEEECCBTTTBCHH
T ss_pred             CcEEEEcCCCCcCcCh
Confidence            3568999999999754

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.27  E-value=0.053  Score=34.31  Aligned_cols=15  Identities=27%  Similarity=0.264  Sum_probs=12.6

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+++.
T Consensus         3 K~I~FD~dGTL~d~~   17 (230)
T d1x42a1           3 RAVFFDFVGTLLSVE   17 (230)
T ss_dssp             CEEEECSBTTTBCHH
T ss_pred             eEEEEeCCCCcEech
Confidence            478999999999753

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.32  E-value=0.076  Score=32.78  Aligned_cols=14  Identities=21%  Similarity=0.313  Sum_probs=12.0

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      .+++||+||||+-+
T Consensus         4 ~~~lfD~dGTl~d~   17 (225)
T d2g80a1           4 STYLLDIEGTVCPI   17 (225)
T ss_dssp             SEEEECCBTTTBCT
T ss_pred             CEEEEcCCCCCccc
Confidence            57899999999854

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=87.14  E-value=0.079  Score=33.37  Aligned_cols=37  Identities=11%  Similarity=0.062  Sum_probs=31.4

Q ss_pred             EEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhh
Q 040601           57 VKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        57 v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      ....|++.+.|+++. .+.+++.|++...+++.+++.+
T Consensus        92 ~~~~~~~~~~L~~l~-~~~~~v~s~~~~~~~~~~~~~~  128 (245)
T d1qq5a_          92 LTPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANA  128 (245)
T ss_dssp             CCBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHT
T ss_pred             cccchhhhHHHHHHh-hhceeEEeccchHHHHHHHhhc
Confidence            457899999999996 4679999999999999888765

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.81  E-value=0.95  Score=27.96  Aligned_cols=36  Identities=8%  Similarity=0.095  Sum_probs=32.8

Q ss_pred             ecchHHHHHHHH-hhcceEEEEeCCchHHHHHHHHhh
Q 040601           59 LRPYIRKFLKEA-SKMYEIYLCTTGIRSYAVMMAKLL   94 (97)
Q Consensus        59 ~RP~~~~FL~~l-s~~~ei~i~T~~~~~YA~~v~~~L   94 (97)
                      .||++.+.++.| +....+++.|-....-|..|.+.+
T Consensus        21 ~R~~~~~~I~~l~~~GI~v~miTGD~~~tA~~ia~~~   57 (168)
T d1wpga2          21 PRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRI   57 (168)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHCcCEEEEECCCCHHHHHHHHHHc
Confidence            799999999999 578999999999999999998764

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=86.61  E-value=0.086  Score=33.78  Aligned_cols=15  Identities=7%  Similarity=-0.031  Sum_probs=12.8

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+.+.
T Consensus         3 kaviFD~dGTL~d~~   17 (257)
T d1swva_           3 EAVIFAWAGTTVDYG   17 (257)
T ss_dssp             CEEEECSBTTTBSTT
T ss_pred             EEEEEcCCCCeEeCc
Confidence            578999999999753

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=86.14  E-value=0.85  Score=27.77  Aligned_cols=15  Identities=27%  Similarity=0.288  Sum_probs=12.7

Q ss_pred             ceEEEeCCCeeeeee
Q 040601            8 LHLVLDLDHTLLHAV   22 (97)
Q Consensus         8 ~~LVLDLDeTLvhs~   22 (97)
                      +.+++|+||||+++.
T Consensus         3 KaIiFD~dGTL~d~~   17 (220)
T d1zrna_           3 KGIAFDLYGTLFDVH   17 (220)
T ss_dssp             CEEEECSBTTTEETH
T ss_pred             EEEEECCCCCcEeCH
Confidence            478999999999753

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=84.93  E-value=0.17  Score=31.31  Aligned_cols=17  Identities=18%  Similarity=0.223  Sum_probs=13.5

Q ss_pred             CCCCceEEEeCCCeeee
Q 040601            4 RQKKLHLVLDLDHTLLH   20 (97)
Q Consensus         4 ~~~k~~LVLDLDeTLvh   20 (97)
                      ...=.+++||+||||+.
T Consensus         4 ~~~i~~vlfD~dGTl~~   20 (253)
T d1zs9a1           4 PAEVTVILLDIEGTTTP   20 (253)
T ss_dssp             CTTCCEEEECCBTTTBC
T ss_pred             CCCCCEEEEeCcCCCcc
Confidence            34557899999999974

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.80  E-value=0.63  Score=28.58  Aligned_cols=14  Identities=21%  Similarity=0.377  Sum_probs=12.4

Q ss_pred             ceEEEeCCCeeeee
Q 040601            8 LHLVLDLDHTLLHA   21 (97)
Q Consensus         8 ~~LVLDLDeTLvhs   21 (97)
                      +.+|+|+||||++|
T Consensus         3 kaviFD~DGtL~dt   16 (222)
T d2fdra1           3 DLIIFDCDGVLVDS   16 (222)
T ss_dssp             SEEEECSBTTTBCC
T ss_pred             eEEEECCCCcccCC
Confidence            46899999999987

>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: AF1437-like
domain: Hypothetical protein AF1437
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.29  E-value=0.97  Score=30.74  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=36.0

Q ss_pred             EEEecchHHHHHHHHhhcceEEEEeCCchHHHHHHHHhhC
Q 040601           56 LVKLRPYIRKFLKEASKMYEIYLCTTGIRSYAVMMAKLLD   95 (97)
Q Consensus        56 ~v~~RP~~~~FL~~ls~~~ei~i~T~~~~~YA~~v~~~LD   95 (97)
                      .+++=||+++.|+.+.+....+|-+.|-..|++++++++.
T Consensus        79 ~~~lvpgA~~~lk~l~~~m~~yIvSTSY~qyi~al~~~~g  118 (308)
T d1y8aa1          79 SAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIG  118 (308)
T ss_dssp             HCCBCTTHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTT
T ss_pred             ceeecCCHHHHHHHHHhhCCcEEEeccHHHHHHHHHhhcC
Confidence            3567899999999999999999999999999999998763