Citrus Sinensis ID: 040614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQDHKSDVYGASYGSFVCGAQTLDGSYCRRQVKANTKCWQHSDKSLTIRSWSDWNYGGSSLCGAPTRNGSSCRRSVKGGGRCWQH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccEEEEcEEcccccEEEEEEEcHHHHHHHHHHHcccccccccccccccHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccHHHHHHHHccccccccEEEEcccccccccccEEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccEEEEEccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHccccccccccccccEEEEccccHHHHHcccccccEEEEccccccccccEEEEEEEcccccEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccEEEEEccccccccHHHHEEHccccccccccccccccccccEcEEEEcccccccccccccccccHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHcccEEEcccccccccccccccccccccccEcEEEcccccccccccccccccHHHcccEEEccccccccccccEEEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
MEAALLAIIARIQRedcertnhdsqfskwkelvgpsdwenhshgkegaerykvhnlpndtgpglyelgiavpGAGVIVVYVGQAESVRARLQAYgrtgahlnsgcdsgryFEDIFRRGYSIvyrsapmknkedAEKTERKILDKFDyawnkgnngkrrhADVRRKLDEvasnniqfpKTIRNLLrfnhwpadikikaspeghnflpqiikftksqprlvldrygadeghtgicgvslgdgsvcqmppveqRKRCiehrgmrirastltmkgkakvcdvdptklpmvaqkcsvsegeernrrkncgsnskstgssqyghdayvdsnapgalnspemyrqgrvqskaklQYDTicgvelgggtfctrqpvkgrvrceqhkgwkiqgtkstsvaqdhksdvygasygsfvcgaqtldgsycrrqvkantkcwqhsdksltirswsdwnyggsslcgaptrngsscrrsvkgggrcwqh
Flexible Loop (DISEMBL)
MEAALLAIIAriqredcertnhdsqfskwkelvgpsDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYgrtgahlnsgcdsgryFEDIFRRGYSIvyrsapmknkedaekterkildkfdyawnkgnngkrrhadvrrkldevasnniqfpktirNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVslgdgsvcqmPPVEQrkrciehrgmrirastltmkgkakvcdvdptklpmvaqkcsvsegeernrrkncgsnskstgssqyghDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRceqhkgwkiqgtkstsvaqDHKSDVYGASYGSFVCGAQTLDGSYCRRQVKantkcwqhsdksltirswsdwNYGGSSlcgaptrngsscrrsvkgggrcwqh
Low Complexity Region (SEG)
MEaallaiiaRIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELgiavpgagvivvyvgQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQDHKSDVYGASYGSFVCGAQTLDGSYCRRQVKANTKCWQHSDKSLTIRSWSDWNYGGSSLCGAPTRNGSSCRRSVKGGGRCWQH
Disordered region (IsUnstruct)
****LLAIIARIQR**************************************VHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYR****************ILDKFDYAWNKG*************LDEVASNNIQFPKTIRNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVD*****************************************************************AKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTK***VA*DHKSDVYGASYGSFVCGAQTLDGSYCRRQVKANTKCWQHSDKSLTIRSWSDWNYGGSSLCG**********************
Disordered Region (DISOPRED)
*********ARIQREDCERTNHDSQFSKWKELVGPSDWEN********ERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYG*TGAHLNSGCDSGRYFEDIFRRGYSIVYRSA**************ILDKFDYAWNKGNN********************************************************FTK**************GHTGICGVSLGDGSVCQMPPV*********************************************************************************************************GVELGGGTFCTRQPVK*RVRC***************************************************************************SLCGAPTRNGSSCR************
Disordered Region (DISEMBL)
MEAALLAIIARIQRED********QFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAP*********TERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTKLPMVA****************************YGHDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQDHKSDVYGASYGSFVCGAQTLDGSYCRRQVKANTKCWQHSDKSLTIRSWSDWNYGGSSLCGA*********************
Disordered Region (DISPRO)
**************EDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRAST*********************************************************************************QYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTK*****************GSFVCGAQTLDGSYCRRQ***NTKCW**S***LTIRSWSDWNYGGSSLCGAPTRNGSSCRRS**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQDHKSDVYGASYGSFVCGAQTLDGSYCRRQVKANTKCWQHSDKSLTIRSWSDWNYGGSSLCGAPTRNGSSCRRSVKGGGRCWQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
297738689	560	unnamed protein product [Vitis vinifera]	0.955	0.810	0.389	9e-94
225444967	491	PREDICTED: uncharacterized protein LOC10	0.898	0.869	0.405	2e-92
255546179	499	conserved hypothetical protein [Ricinus	0.871	0.829	0.372	1e-80
224091306	689	predicted protein [Populus trichocarpa]	0.983	0.677	0.347	6e-80
449435840	478	PREDICTED: uncharacterized protein LOC10	0.821	0.815	0.390	9e-76
2104685	377	transcripteion factor [Vicia faba var. m	0.703	0.885	0.386	6e-70
356520864	426	PREDICTED: uncharacterized protein LOC10	0.766	0.854	0.376	6e-70
357501273	368	Transcripteion factor [Medicago truncatu	0.682	0.880	0.374	4e-67
145359333	483	effector of transcription2 [Arabidopsis	0.863	0.848	0.347	2e-65
357509455	441	hypothetical protein MTR_7g090060 [Medic	0.688	0.741	0.390	9e-65

>gi|297738689|emb|CBI27934.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 219/562 (38%), Positives = 296/562 (52%), Gaps = 108/562 (19%)

Query: 8   IIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTG-PGLYE 66
           I++R++REDC+RT HDS+F+KWK LVGPSDWE+HS  KEGAERY+VHNLP     PG+YE
Sbjct: 8   IVSRLKREDCKRTKHDSEFTKWKILVGPSDWEDHSSRKEGAERYRVHNLPLCCHCPGVYE 67

Query: 67  LGIAVPGAG------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR----- 109
           LGI+V   G            ++VVY+GQAE +RARLQ YGR+GAHL     +G      
Sbjct: 68  LGISVSPTGLGREVGKLDPAHIVVVYLGQAEDIRARLQHYGRSGAHLAKVDSTGNPNNCK 127

Query: 110 ---------YFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHA 160
                     FE IF RGYSIV+R AP+++K DAE+TE ++L  FDYAWNKG+NG RR +
Sbjct: 128 NMPLQRGSGLFEGIFSRGYSIVFRWAPIESKRDAERTESRLLKTFDYAWNKGSNGARRPS 187

Query: 161 DVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASP------------EGHNFLPQI 208
           DV RKL++ +S+   FP   R           I IKAS             + ++ L ++
Sbjct: 188 DVLRKLEKTSSSTPPFPSITRKFQMLGQKQVGIIIKASKPFLQENGLSTDQDINSLLARV 247

Query: 209 IKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRA--ST 266
            KF +SQPRLV DR G    +   CGV+LGDG++C+ PPVE RKRC EH+GM+ ++  S 
Sbjct: 248 FKFGRSQPRLVSDRVGVTGNYNSTCGVALGDGTICERPPVEGRKRCAEHKGMKTKSSFSK 307

Query: 267 LTMKGKAKVCDVD-------------PTKLPMVAQKCSVSEG------------------ 295
             ++ K ++ D++                  +V  KC V++                   
Sbjct: 308 PIVERKPQMVDLNRESEGHSAQSYGYTVNFQLVGGKCPVNKDFTIICGVILDDGFPCKRQ 367

Query: 296 ---------EERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRVQSKAK 346
                    E +  R N   ++ + G S   H  Y     P  L  P+       +S + 
Sbjct: 368 PVLGRKRCEEHKGMRTNVSISNSTVGKS---HHTYESKLQPQVL--PD------CRSFSN 416

Query: 347 LQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQD--HKSDVYGASYG 404
             Y   CGV+LG G FC R  V GR RCE+HKG +I    ST   +D  H  D+ G+ + 
Sbjct: 417 TDYGITCGVDLGHGIFCKRLAVAGRKRCEEHKGMRINSLISTLAGEDKSHALDM-GSGFI 475

Query: 405 SF---------VCGAQTLDGSYCRRQ-VKANTKCWQHSDKSLTIRSWSDWNYGGSSLCGA 454
           ++          CG    DGS C+RQ V+ N +CWQH  K + +   S W    ++LCG 
Sbjct: 476 TYNNSNYNHTSTCGMTLGDGSICKRQPVEGNKRCWQH--KGMRVNCSSSWFGSETTLCGV 533

Query: 455 PTRNGSSCRR-SVKGGGRCWQH 475
             RNGS C R    G  RC QH
Sbjct: 534 LLRNGSVCSRVPAHGRKRCEQH 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444967|ref|XP_002279809.1| PREDICTED: uncharacterized protein LOC100264589 [Vitis vinifera]

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 280/520 (53%), Gaps = 93/520 (17%)

Query: 8   IIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTG-PGLYE 66
           I++R++REDC+RT HDS+F+KWK LVGPSDWE+HS  KEGAERY+VHNLP     PG+YE
Sbjct: 8   IVSRLKREDCKRTKHDSEFTKWKILVGPSDWEDHSSRKEGAERYRVHNLPLCCHCPGVYE 67

Query: 67  LGIAVPGAG------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR----- 109
           LGI+V   G            ++VVY+GQAE +RARLQ YGR+GAHL     +G      
Sbjct: 68  LGISVSPTGLGREVGKLDPAHIVVVYLGQAEDIRARLQHYGRSGAHLAKVDSTGNPNNCK 127

Query: 110 ---------YFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHA 160
                     FE IF RGYSIV+R AP+++K DAE+TE ++L  FDYAWNKG+NG RR +
Sbjct: 128 NMPLQRGSGLFEGIFSRGYSIVFRWAPIESKRDAERTESRLLKTFDYAWNKGSNGARRPS 187

Query: 161 DVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKASP------------EGHNFLPQI 208
           DV RKL++ +S+   FP   R           I IKAS             + ++ L ++
Sbjct: 188 DVLRKLEKTSSSTPPFPSITRKFQMLGQKQVGIIIKASKPFLQENGLSTDQDINSLLARV 247

Query: 209 IKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLT 268
            KF +SQPRLV DR G    +   CGV+LGDG++C+ PPVE RKRC EH+GM+ ++S   
Sbjct: 248 FKFGRSQPRLVSDRVGVTGNYNSTCGVALGDGTICERPPVEGRKRCAEHKGMKTKSS--- 304

Query: 269 MKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPG 328
                          P+V +K  + +            N +S G S   +   V+    G
Sbjct: 305 ------------FSKPIVERKPQMVD-----------LNRESEGHSAQSYGYTVNFQLVG 341

Query: 329 ALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKST 388
                        +      +  ICGV L  G  C RQPV GR RCE+HKG +I    ST
Sbjct: 342 G------------KCPVNKDFTIICGVILDDGFPCKRQPVLGRKRCEEHKGMRINSLIST 389

Query: 389 SVAQD--HKSDVYGASYGSF---------VCGAQTLDGSYCRRQ-VKANTKCWQHSDKSL 436
              +D  H  D+ G+ + ++          CG    DGS C+RQ V+ N +CWQH  K +
Sbjct: 390 LAGEDKSHALDM-GSGFITYNNSNYNHTSTCGMTLGDGSICKRQPVEGNKRCWQH--KGM 446

Query: 437 TIRSWSDWNYGGSSLCGAPTRNGSSCRR-SVKGGGRCWQH 475
            +   S W    ++LCG   RNGS C R    G  RC QH
Sbjct: 447 RVNCSSSWFGSETTLCGVLLRNGSVCSRVPAHGRKRCEQH 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546179|ref|XP_002514149.1| conserved hypothetical protein [Ricinus communis] gi|223546605|gb|EEF48103.1| conserved hypothetical protein [Ricinus communis]

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 278/543 (51%), Gaps = 129/543 (23%)

Query: 3   AALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGP 62
           +++ A  +R++RED +RT HD+ FSKW+ LVGP DWE++S GKEGA RY+VHNLP  + P
Sbjct: 7   SSVPAAASRLKREDYKRTKHDTHFSKWQILVGPCDWEDYSQGKEGATRYRVHNLPTRSYP 66

Query: 63  GLYELGIAVPGAG------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRY 110
           GLYELGIAV  +G            + VVY+GQA++VR+RLQ YGR+G+HL +   +  +
Sbjct: 67  GLYELGIAVSRSGLGREVGKIDPDDIAVVYLGQADNVRSRLQHYGRSGSHLGASYATSHW 126

Query: 111 --------------FEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGK 156
                         FE+IF RG+SI +R APMK+K  AE+TE ++LD FDYAWN+G+NG 
Sbjct: 127 NDSKIESPQKGPGLFEEIFLRGHSIAFRWAPMKDKRKAEETEAQLLDTFDYAWNRGSNGA 186

Query: 157 RRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKA----SPEGHNFLPQ----- 207
           RR  D+ +KL ++AS+   F    + LL        +KI++    SPE  NF P      
Sbjct: 187 RRPNDILQKLSKIASSTNSFSSISKRLLFIRPSRVGVKIESSKPLSPEKFNFPPDEEGKS 246

Query: 208 ----IIKFTKSQPRLVLDRYGA-DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRI 262
               I KF++S PRLV D+YG  D+    ICG+ + D  +C+ PPV  +KRC  H+GMR 
Sbjct: 247 FLHGIFKFSRSLPRLVSDKYGTDDQDFIPICGIIMSDAIICKKPPVPGKKRCEVHKGMRN 306

Query: 263 RASTLTMKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYV 322
            A                                       C     + G+S Y  D ++
Sbjct: 307 YA---------------------------------------CNPKPIAEGNSHYAPDLHL 327

Query: 323 DSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKI 382
           DS++           QG+         +  CGV LG G FC  + V GR RCE+HKG +I
Sbjct: 328 DSSSNDD--------QGK---------NATCGVNLGDGNFCRMEVVPGRKRCEEHKGMRI 370

Query: 383 QGTKSTSVAQD-------------------HKSDVYGAS----YGSFVCGAQTLDGSYCR 419
               S  +A++                   H +     S    + S VCGA   +GS C 
Sbjct: 371 NSCASKPIAEEKCHIPSISSVFTSLGPCTIHNTSTSNESSVDEHLSTVCGATLGNGSVCS 430

Query: 420 RQ-VKANTKCWQHSDK-----SLTIRSWSDWNYGGSSLCGAPTRNGSSCRRS-VKGGGRC 472
           RQ V  N +CWQH  K     S T RS S ++   S  CG   ++GS C R+ V+G  RC
Sbjct: 431 RQPVGGNKRCWQHKGKRVQSNSKTSRSLSGFD---SLTCGVALQSGSVCMRAPVQGRKRC 487

Query: 473 WQH 475
            QH
Sbjct: 488 EQH 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091306|ref|XP_002309221.1| predicted protein [Populus trichocarpa] gi|222855197|gb|EEE92744.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 220/633 (34%), Positives = 296/633 (46%), Gaps = 166/633 (26%)

Query: 6   LAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLY 65
           + + AR++RED +RT HDS FSKW+ L+GPSDW+++  GKEGA RY++HNLP  +GPGLY
Sbjct: 1   MDVGARLKREDYKRTKHDSSFSKWQLLIGPSDWQDYFLGKEGASRYRIHNLPTTSGPGLY 60

Query: 66  ELGIAVPGAG-------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR--- 109
           ELGIAVP +G             ++VVY+GQA++VR RLQ YGR+GAHL +   +G    
Sbjct: 61  ELGIAVPRSGLSRRDVGKLVRDDIVVVYLGQADNVRTRLQQYGRSGAHLGNTYSTGHVND 120

Query: 110 -----------YFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRR 158
                       FE+IF RG SIVYR APMK+K DAE+TE K+L  FDYAWNKG+NG RR
Sbjct: 121 SKDDSLQKGLGLFEEIFSRGQSIVYRWAPMKDKRDAEETEGKLLGTFDYAWNKGSNGTRR 180

Query: 159 HADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKA----SPEGH---------NFL 205
            +DV + L+   S   + P   + L   +H    IKIKA    SPE H            
Sbjct: 181 PSDVLQNLN---SRTTRPPDIFQWLPFSSHKLGGIKIKASKPLSPEKHAGFGDEDSKKLF 237

Query: 206 PQIIKFTKSQPRLVLDRYGADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRAS 265
             I K ++SQPRLV D+YG +E    ICG  + DG  C+ PPV   KRC EH+G R+  S
Sbjct: 238 FGIFKLSRSQPRLVTDKYGINEDSDCICGFIMVDGIPCRRPPVPGGKRCEEHKGRRVYGS 297

Query: 266 TLTMKGKAKV-----CDVDPTKLPMVAQK--CSVSEGEERNRRKNCGSNSK--------- 309
           +     +  +      ++D T       +  C V+ G+    RK   +  K         
Sbjct: 298 SYKSIAQRNLHYPHGANLDSTTHNDREHETTCGVNLGDGTFCRKQAVAGRKRCEEHKGMR 357

Query: 310 ----------------STGSSQYGHDAY-VDSNAPGALNSPEMYRQGRVQSKAKLQYDTI 352
                           S  SS +   A  V++NA    N+   ++ G   +  K  +   
Sbjct: 358 VNTSVLEPAAEDKIRMSAPSSVFNSFADGVNNNASSKHNADSTWQCGSSNNPVKEHFPNT 417

Query: 353 CGVELGGGTFCTRQPVKGRVRCEQHKGWKIQ----GTKSTSVAQDHKSDVYGAS--YGSF 406
           CGV LG G+FC RQP+ G  RC QHKG +++    G  S+  A + K  +   S  + SF
Sbjct: 418 CGVMLGNGSFCRRQPILGNKRCWQHKGQRVECNLSGVDSSEPAAEEKIRMSAPSSVFNSF 477

Query: 407 ---------------------------------VCGAQTLDGSYCRRQ-VKANTKCWQH- 431
                                             CG    +GS+CRRQ +  N +CWQH 
Sbjct: 478 ADSVNNNASSKHNAYSTWQCGSSNNPVKELFPNTCGVMLGNGSFCRRQPILGNKRCWQHK 537

Query: 432 ------------------------SDKSLTIRSWSD---------------WNYGGS--- 449
                                   S  S    S++D               W  G S   
Sbjct: 538 GQRVECNLSGVDSSEPAAEEKIRMSAPSSVFNSFADSVNNNASSKHNAYSTWQCGSSNNP 597

Query: 450 ------SLCGAPTRNGSSCRRS-VKGGGRCWQH 475
                 + CG    NGS CRR  ++G  RCWQH
Sbjct: 598 VKELFPNTCGVMLGNGSFCRRQPIQGNKRCWQH 630

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435840|ref|XP_004135702.1| PREDICTED: uncharacterized protein LOC101208130 [Cucumis sativus] gi|449522410|ref|XP_004168219.1| PREDICTED: uncharacterized protein LOC101231195 [Cucumis sativus]

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 187/479 (39%), Positives = 253/479 (52%), Gaps = 89/479 (18%)

Query: 1   MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDT 60
           M A L  I  R++REDC+RT HDS FSKW+ LV  SDWE++S GKEGAERY++HNLP  +
Sbjct: 1   MVAELSPI--RLKREDCKRTKHDSDFSKWEILVASSDWEDYSLGKEGAERYRIHNLPKVS 58

Query: 61  GPGLYELGIAVPGAG------------VIVVYVGQAESVRARLQAYGRTGAHLNSG---- 104
           GPGLYELGI V  +G            ++VVY+G+A++VR RLQ YGR+G+HL +     
Sbjct: 59  GPGLYELGITVSSSGLGREIAKLDADWIVVVYLGEADNVRTRLQHYGRSGSHLGNAYFCV 118

Query: 105 -------CDSG-RYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGK 156
                   + G   F+++F RGYSIVYR APMKNK++A+ TE ++L  FDYAWN   NG 
Sbjct: 119 VDCKVFPLEKGPSLFQEMFSRGYSIVYRWAPMKNKKNAQMTETQLLKTFDYAWNTSGNGA 178

Query: 157 RRHADVRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKAS-------------PEGHN 203
           RRH DV +KL+ +AS   +     R LL F      IKIK S              E +N
Sbjct: 179 RRHDDVLKKLENIASQTTKSTFISRKLLPFTQKKMGIKIKTSKSIPMVNKPAEDAEERNN 238

Query: 204 FLPQIIKFTKSQPRLVLDRYGADEGHTGICGVSLG-DGSVCQMPPVEQRKRCIEHRGMRI 262
           F  +I+ F++S+PRLV +    +   +  CGV +G +G VC+ PPVE RKRC EH+GM+I
Sbjct: 239 FFSRILSFSRSRPRLVDNTNDVNWADSNSCGVVIGHNGEVCRKPPVEGRKRCAEHKGMKI 298

Query: 263 R------ASTLTMKGKAKV---------CDVDPTKLPMVAQKCSVSEGEERNRRKNCGSN 307
                  +S   ++    V              +++P   ++CSVS     N   N GS+
Sbjct: 299 NGLLKNSSSRFILQKPVNVGTTIYGEKDFSCSKSEIPNSTEECSVS-----NSFPNKGSS 353

Query: 308 SKSTGSSQYG------------------------HDAYVDS--NAPGALNSPE--MYRQG 339
               G   Y                             V S       ++ PE  +  QG
Sbjct: 354 LPICGVVLYDGSPCRRPPVQGRKRCEEHKGQRICRSTLVTSKYQQTSPISKPESTVIAQG 413

Query: 340 RVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQDHKSDV 398
                +    + +CGV+LG G  CTRQPVKGRVRC +HKG +     ST +A  +K DV
Sbjct: 414 TSSELSSSGLERMCGVDLGNGLNCTRQPVKGRVRCGEHKGMRTNKLIST-LATSNKPDV 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2104685|emb|CAA66483.1| transcripteion factor [Vicia faba var. minor]

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 157/406 (38%), Positives = 225/406 (55%), Gaps = 72/406 (17%)

Query: 12  IQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAV 71
           ++RE+C+ T HDS FS WK L+GPSDWE++S GKEG+ RY++ NLP ++GPG+YELG+A+
Sbjct: 10  LKREECKHTKHDSSFSHWKILIGPSDWEDYSKGKEGSTRYRIQNLPQNSGPGVYELGVAM 69

Query: 72  PGAG-----------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR--------YFE 112
             +G           V+VVY+G+A++VR RLQ+YGR GAHL +GC +           F 
Sbjct: 70  STSGLGREIYKLATRVVVVYLGKADNVRTRLQSYGRNGAHLGNGCSTFESSEEKGHSLFH 129

Query: 113 DIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASN 172
           DIF + + IVYR APM+NK DA +TE ++L  FDYAWN  NNG RR AD+ + L++++S 
Sbjct: 130 DIFFQSFPIVYRWAPMQNKGDALQTESQLLSTFDYAWNTINNGTRRPADILQMLNKISSG 189

Query: 173 NIQFPKTIRNLLRFNHWPADIKIKA----------SPEGHNFLPQIIKFTKSQPRLVLDR 222
              F +  ++L+ F      I IKA            +G+NFL ++ KF +S+  ++ D 
Sbjct: 190 TRTFSEVAKSLVPFTQKKVGILIKARKLPMTDNKSDNDGYNFLSRVFKFNRSRKVVIHDT 249

Query: 223 YG-ADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPT 281
              A E +  ICGV L DGS+C   PV +R RC EH+GMRI   T              T
Sbjct: 250 SDFAVEKNGKICGVILDDGSICSKMPVGKRVRCNEHKGMRINMVT--------------T 295

Query: 282 KLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRV 341
           K    A + S SE E     K      +S   S+   ++ VD +                
Sbjct: 296 K----AMRRSKSESENVFTAKEI---RRSKSESEKVSESLVDES---------------- 332

Query: 342 QSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQGTKS 387
                +    ICG+ L  G+ C ++PVKGR RC +HKG +++ + S
Sbjct: 333 -----ITKTVICGIVLEDGSTCRKEPVKGRKRCHEHKGKRVRASVS 373

Source: Vicia faba var. minor

Species: Vicia faba

Genus: Vicia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520864|ref|XP_003529080.1| PREDICTED: uncharacterized protein LOC100784450 [Glycine max]

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 225/428 (52%), Gaps = 64/428 (14%)

Query: 9   IARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELG 68
           ++R +RE C RT HDS FS WK L+GP DWE+HS GKEG  RY++HNLP  +GPG+YELG
Sbjct: 5   MSRFKREQCNRTKHDSSFSHWKILIGPRDWEDHSKGKEGCSRYRIHNLPQQSGPGVYELG 64

Query: 69  IAVPGA--------------GVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDI 114
           IA   +               ++VVY+GQ E+VR RL+ YG  G HL     S   F+ +
Sbjct: 65  IAAAASVSERKIYKLVPHRHRIVVVYLGQTENVRERLRRYGGNGDHLEDS--SLHLFQQV 122

Query: 115 FRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNI 174
           F +G+SI+YR APM+NKEDA +TE ++L  FDYAWN  +N  RR  D+ +KL ++AS   
Sbjct: 123 FSQGFSILYRWAPMQNKEDALRTETELLSTFDYAWNTRSNCVRRPDDILQKLHQIASGTR 182

Query: 175 QFPKTIRNLLRFNHWPADIKIKA--------SPEGHNFLPQIIKFTKSQPRLVLDRYGA- 225
                 R LL F      I+IK+            +N L ++  F +S+PRLV D  GA 
Sbjct: 183 TLSDIARALLPFTQKQVGIQIKSIKLDEADNGSSYNNLLSRLFSFNRSRPRLVQDITGAI 242

Query: 226 -DEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVC---DVDPT 281
            ++ +  ICGV+LGDGS+C  PP E+R RC EH+GMR   ST      A +    D++  
Sbjct: 243 QEQENGKICGVALGDGSICTRPPAEKRMRCPEHKGMRTNVSTAKAIIGAPMSESHDLEDP 302

Query: 282 KLPMVAQKCS---------VSEG---------------EERNRRKNCGSNSKSTGSSQYG 317
              +V +  +         +S+G               E + RR    S        +Y 
Sbjct: 303 PQTVVDESLTNTDYICGILLSDGSTCTRQPVKGRKRCHEHKGRRIRAASIQTKDNGYKYQ 362

Query: 318 HDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQH 377
           ++   D   P     P+      + +        ICG+ L  G+ CTR PVKGR RC +H
Sbjct: 363 NNVSNDVEDP-----PQTLVDESITNT------NICGIILNDGSTCTRHPVKGRKRCHEH 411

Query: 378 KGWKIQGT 385
           KG +I+ +
Sbjct: 412 KGRRIRAS 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501273|ref|XP_003620925.1| Transcripteion factor [Medicago truncatula] gi|355495940|gb|AES77143.1| Transcripteion factor [Medicago truncatula]

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 213/411 (51%), Gaps = 87/411 (21%)

Query: 12  IQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAV 71
           ++RE C+ T HDS FS WK L+GPSDWE++S GKEG+ RY++HNLP ++GPG+YELG+A 
Sbjct: 2   LKREQCDYTKHDSSFSHWKILIGPSDWEDYSKGKEGSTRYRIHNLPENSGPGVYELGVAA 61

Query: 72  PGAG--------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR-------- 109
             +G              V+VVY+G+ ++VR RLQ YGR GAHL +GC S          
Sbjct: 62  STSGLGREIYKLSTDSCRVVVVYLGKGDNVRTRLQCYGRNGAHLGNGCSSFESSHQKGHS 121

Query: 110 YFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEV 169
            F +IF +G+ IVYR A M+ K DA +TE ++L  FDYAWN  NNG RR  D+   L+++
Sbjct: 122 LFHEIFLQGFPIVYRWASMQTKGDALQTESQLLSTFDYAWNTINNGPRRPGDILEMLNKI 181

Query: 170 ASNNIQFPKTIRNLLRFNHWPADIKIKAS-------------PEGHNFLPQIIKFTKSQP 216
           +S+   F    ++LL F      I IK+S                +NFL ++ KF +S+P
Sbjct: 182 SSDTRTFSDVAKSLLPFTQKKVGIPIKSSMLPVKDNKSNEVDSGNYNFLSRVFKFNRSRP 241

Query: 217 RLVLDRYG-ADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKV 275
           ++V D+   + E    ICGV L DGS+C   PVE+R RC EH+GMRI             
Sbjct: 242 KIVQDKADFSVEKKDKICGVILDDGSICTKTPVEKRVRCHEHKGMRI------------- 288

Query: 276 CDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEM 335
                                     +   S SK   + +Y +  +   + P        
Sbjct: 289 --------------------------RTAKSESKRGNACRYQNIKHDVEDLP-------- 314

Query: 336 YRQGRVQSKA--KLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQG 384
             Q  V+S     +     CG+ L  GT C RQPVKGR RC  HKG +I+ 
Sbjct: 315 --QTVVESLVDESITKTITCGIILEDGTTCRRQPVKGRKRCHDHKGKRIRA 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145359333|ref|NP_200489.2| effector of transcription2 [Arabidopsis thaliana] gi|332009423|gb|AED96806.1| effector of transcription2 [Arabidopsis thaliana]

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 250/529 (47%), Gaps = 119/529 (22%)

Query: 6   LAIIARI-QREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGL 64
            A++  + +RED +RT HD+ FSKW+ L+G +DWE+  +GK+G  RY+V NLP  + PGL
Sbjct: 9   FAVVPTVFKREDYKRTKHDTVFSKWQVLIGSNDWEDFKNGKDGVGRYRVQNLPRKSCPGL 68

Query: 65  YELGIAVPGAG---------VIVVYVGQAESVRARLQAYGRTGAHLN-----SGCD---- 106
           YELG+AV G           V+  Y+GQAESVR+RLQ YGR+GAHL      + C+    
Sbjct: 69  YELGVAVIGQEQCRKLEPDIVLASYLGQAESVRSRLQRYGRSGAHLRNVNNLNDCETIES 128

Query: 107 -----SGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHAD 161
                +G  FEDIF +G SI+YR APM +K +AE TE  +L  FDYAWNKG+NG+RR  D
Sbjct: 129 PVKAVTGGLFEDIFSKGGSILYRWAPMGSKREAEATEGMLLSTFDYAWNKGSNGERRQLD 188

Query: 162 VRRKLDEVASNNIQFPKTIRNLLRFNHWPADIKIKA----------------SPEGHNFL 205
           + +KL +    + +     R L  F      I+IK                   + +NFL
Sbjct: 189 LLKKLGDREFMSKRKSGISRMLFPFLRNQVGIRIKGEKHVLKEERKLTCDVDEEKSNNFL 248

Query: 206 PQIIKFTKSQPRLVLDRYGADEGHTG--ICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIR 263
             I+K T+S+P+ V DR+   +G     +CGV L DG  C   PV+ RKRCIEH+G R  
Sbjct: 249 TSILKLTRSRPQPVSDRFDEVDGSCSDIVCGVLLEDGGCCIRSPVKGRKRCIEHKGQR-- 306

Query: 264 ASTLTMKGKAKVCDVDPTKLPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVD 323
                      VC V P K      K  +  G++                    H  + D
Sbjct: 307 -----------VCRVSPEK--QTPPKSEIFTGQD--------------------HHNHKD 333

Query: 324 SNAPGALNSPEMYRQGRVQSKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQ 383
           S                         D +CGV L     C ++PV GR RCE HKG +I 
Sbjct: 334 S-------------------------DVVCGVILPDMEPCNKRPVPGRKRCEDHKGMRIN 368

Query: 384 G-------TKSTSVAQDHKSDVYGASYG------SFVCGAQTLDGSYCRRQV-KANTKCW 429
                   T      +D K D    +        +  C A T +G  C R   K + +CW
Sbjct: 369 AFLFLLNQTDREKTVKDEKPDPESHTESIEEEALTRFCEATTKNGLPCTRSSPKGSKRCW 428

Query: 430 QHSDKSLTIRS--WSDWNYGGSSLCGAPTRNGSSCRRS-VKGGGRCWQH 475
           QH +K+ +  S  +       +  CG    NG  C RS VKG  RC +H
Sbjct: 429 QHKEKTSSDTSPVYFQPEAAKNVACGVKLGNGLICERSPVKGRKRCEEH 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509455|ref|XP_003625016.1| hypothetical protein MTR_7g090060 [Medicago truncatula] gi|134054013|gb|ABD28323.2| Excinuclease ABC, C subunit, N-terminal, putative [Medicago truncatula] gi|355500031|gb|AES81234.1| hypothetical protein MTR_7g090060 [Medicago truncatula]

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 157/402 (39%), Positives = 218/402 (54%), Gaps = 75/402 (18%)

Query: 21  NHDSQFSK-WKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG---- 75
           +HD+ F+   K L+GPSDWE++S  KEG+ RY++HNLP   GPG+YELG+AV  +     
Sbjct: 76  SHDNNFTSCAKILIGPSDWEDYSKEKEGSTRYRIHNLPQKLGPGVYELGVAVSRSNLGRE 135

Query: 76  ----------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDS-------GR-YFEDIFRR 117
                     ++VVY+G+A++VRARLQ YGR GAHL++ C S       GR  F++IF +
Sbjct: 136 IYKLSTDPRRIVVVYLGKADNVRARLQRYGRNGAHLSNTCMSDDSSLRTGRSLFQEIFSQ 195

Query: 118 GYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFP 177
           G+ IVYR APM+N+ DA +TE ++L  FDYAWN  +NG RR  D+ + L+++AS    F 
Sbjct: 196 GFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRRPDDIHQMLNKLASGTRTFS 255

Query: 178 KTIRNLLRFNHWPADIKIKASPE-------------GHNFLPQIIKFTKSQPRLVLDRY- 223
              + +L F      I IK+S                +N L ++ KF +S+PR+V D   
Sbjct: 256 DVAKLILPFTQKKVGIPIKSSKLHLTDDKLDEADSGSYNVLSRVFKFNRSRPRIVQDTTV 315

Query: 224 -GADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTK 282
             A   +  ICGV L DGS+C+ PPVE+R RC EH+GMRI AST              TK
Sbjct: 316 GSATNENAKICGVMLTDGSICKRPPVEKRVRCPEHKGMRINAST--------------TK 361

Query: 283 LPMVAQKCSVSEGEERNRRKNCGSNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRVQ 342
               A +   SE E   R                  +AY   NA   +  P   R  +  
Sbjct: 362 ----AIRSPKSELESIVR------------------NAYRYQNASHDVEDPPQ-RTVKCH 398

Query: 343 SKAKLQYDTICGVELGGGTFCTRQPVKGRVRCEQHKGWKIQG 384
            +  +    ICG+ L  G+ C RQPVKGR RC++HKG +I+ 
Sbjct: 399 VEEGITKTIICGIILDDGSTCRRQPVKGRKRCQEHKGRRIRA 440

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
TAIR|locus:2165026	483	ET2 "AT5G56780" [Arabidopsis t	0.437	0.430	0.350	2.3e-55
TAIR|locus:2165011	254	AT5G56770 "AT5G56770" [Arabido	0.298	0.559	0.388	1.3e-22
TAIR|locus:2120869	506	AT4G26170 "AT4G26170" [Arabido	0.48	0.450	0.274	7.2e-15

TAIR|locus:2165026 ET2 "AT5G56780" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
 Identities = 88/251 (35%), Positives = 126/251 (50%)

Query:    83 QAESVRARLQAYGRTGAHLNS-----GCDS---------GRYFEDIFRRGYSIVYRSAPM 128
             QAESVR+RLQ YGR+GAHL +      C++         G  FEDIF +G SI+YR APM
Sbjct:    96 QAESVRSRLQRYGRSGAHLRNVNNLNDCETIESPVKAVTGGLFEDIFSKGGSILYRWAPM 155

Query:   129 KNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRKLDEVASNNIQFPKTIRNLLRFNH 188
              +K +AE TE  +L  FDYAWNKG+NG+RR  D+ +KL +    + +     R L  F  
Sbjct:   156 GSKREAEATEGMLLSTFDYAWNKGSNGERRQLDLLKKLGDREFMSKRKSGISRMLFPFLR 215

Query:   189 WPADIKIKASP----------------EGHNFLPQIIKFTKSQPRLVLDRYGADEGHTGI 232
                 I+IK                   + +NFL  I+K T+S+P+ V DR+   +G    
Sbjct:   216 NQVGIRIKGEKHVLKEERKLTCDVDEEKSNNFLTSILKLTRSRPQPVSDRFDEVDG---- 271

Query:   233 CGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTKLPMVAQKCSV 292
                S  D  VC +  +E    CI    ++ R   +  KG+ +VC V P K      K  +
Sbjct:   272 ---SCSD-IVCGVL-LEDGGCCIRSP-VKGRKRCIEHKGQ-RVCRVSPEK--QTPPKSEI 322

Query:   293 SEGEERNRRKN 303
               G++ +  K+
Sbjct:   323 FTGQDHHNHKD 333

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165011 AT5G56770 "AT5G56770" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 63/162 (38%), Positives = 86/162 (53%)

Query:    13 QREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELXXXXX 72
             +RED + T HD  FSKW+ L+  +DW++ ++ KE   RY+  +LP     GLYEL     
Sbjct:    56 KREDYKLTIHDIAFSKWRNLIRHNDWKDFNNRKERVRRYRHEDLPPQRCTGLYELGVGVI 115

Query:    73 XXXXXXXXX----------XQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIV 122
                                 Q   V++RLQ YGR G HL SG      +EDIF  GYS+ 
Sbjct:   116 GQDQGQNFDPDNNVLGVYVGQCVDVKSRLQDYGRRGGHLPSGL-----YEDIFSEGYSVF 170

Query:   123 YRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRR 164
             YR AP     +A  TE  +L  FDYAWN  +NG+RRH ++++
Sbjct:   171 YRWAP-----EAAATEGMLLSTFDYAWNTCSNGERRHLELQK 207

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2120869 AT4G26170 "AT4G26170" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 72/262 (27%), Positives = 113/262 (43%)

Query:   192 DIKIKASPEGHNFLPQIIKFTKSQPRLVLDRYG--ADEGHTG-ICGVSLGDGSVCQMPPV 248
             ++   A+ +  N LP I++ ++S+P+ V +++    DE  +   CGV L DG+ C   PV
Sbjct:   262 EVSSDAAEKESNSLPSILRLSRSRPQPVSEKHDDIVDESDSASACGVLLEDGTTCTTTPV 321

Query:   249 EQRKRCIEHRGMRIRASTLTMKGKAKVCDVDPTKLPMVAQKCSVSE---GEERNRRKNCG 305
             + RKRC EH+G R+  S ++  G    C+V PT      ++C  +E   G        C 
Sbjct:   322 KGRKRCTEHKGKRL--SRVS-PGIHIPCEV-PT-----VRECEETENICGVILPDMIRCR 372

Query:   306 SNSKSTGSSQYGHDAYVDSNAPGALNSPEMYRQGRVQSKAKLQYDT---------ICGVE 356
             S   S       H   +  NA   L +P    +   + K+K +  T         +C   
Sbjct:   373 SKPVSRRKRCEDHKG-MRVNAFFFLLNPTERDKAVNEDKSKPETSTGMNQEGSGLLCEAT 431

Query:   357 LGGGTFCTRQPVKGRVRCEQHKGWKIQGTKSTSVAQDHKSDVYGASYGSFVCGAQTLDGS 416
                G  CTR   +G  RC QHK   +    S +V     S V        +CG +  +GS
Sbjct:   432 TKNGLPCTRSAPEGSKRCWQHKDKTLNHGSSENVQSATASQV--------ICGFKLYNGS 483

Query:   417 YCRRQ-VKANTKCWQHSDKSLT 437
              C +  VK   +C +H    +T
Sbjct:   484 VCEKSPVKGRKRCEEHKGMRIT 505

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	475
smart00465	84	smart00465, GIYc, GIY-YIG type nucleases (URI doma	0.002

>gnl|CDD|214677 smart00465, GIYc, GIY-YIG type nucleases (URI domain)

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 78  VVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFED-IFRRGYSIVYRSAPMKNKEDAEK 136
            +YVG+A+++R RL+ +        SG   GR   D + + G +  +        E A +
Sbjct: 14  KLYVGKAKNLRNRLKRH-------FSGSRKGRLLIDALLKYGGNFEFIIL-ESFDESALE 65

Query: 137 TERKILDKFDYAWN 150
            E+ ++ ++   +N
Sbjct: 66  LEKYLIKEYKPKYN 79

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
smart00465	84	GIYc GIY-YIG type nucleases (URI domain).	97.52
PHA02598	138	denA endonuclease II; Provisional	96.28
PRK10545	286	nucleotide excision repair endonuclease; Provision	95.93
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	95.02
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	94.98
PRK07883	557	hypothetical protein; Validated	94.83
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	94.83
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	94.18
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	93.96
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	93.85
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	93.68
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	93.62
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	93.41
PF01541	80	GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR00	91.52
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	91.19
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	84.44

>smart00465 GIYc GIY-YIG type nucleases (URI domain)

Probab=97.52  E-value=0.00021  Score=55.68  Aligned_cols=82  Identities=17%  Similarity=0.256  Sum_probs=57.2

Q ss_pred             CceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCchHHHHHHHHHH
Q 040614           62 PGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKI  141 (475)
Q Consensus        62 pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K~~Ae~tE~~l  141 (475)
                      ||+|-+=-  .  .-.++|+|+|.|+++|+.+|-....      ....+...+...|..+.+.+...... .|...|..|
T Consensus         2 ~gvY~i~~--~--~~~~~YVG~t~nl~~R~~~h~~~~~------~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~E~~~   70 (84)
T smart00465        2 PGVYYITN--K--KNGKLYVGKAKNLRNRLKRHFSGSR------KGRLLIDALLKYGGNFEFIILESFDE-SALELEKYL   70 (84)
T ss_pred             CEEEEEEE--C--CCCEEEEEEccCHHHHHHHHHhCCC------CChHHHHHHHHhcCCeEEEEeecChH-hHHHHHHHH
Confidence            56665532  1  2347899999999999999875544      22355566667776555555544433 299999999


Q ss_pred             hhcchhhhccCCC
Q 040614          142 LDKFDYAWNKGNN  154 (475)
Q Consensus       142 L~~fdYAWN~~~N  154 (475)
                      +..|+..||..-+
T Consensus        71 i~~~~~~~N~~~~   83 (84)
T smart00465       71 IKEYKPKYNLLLK   83 (84)
T ss_pred             HHhcCCCcceeeC
Confidence            9999999997544

>PHA02598 denA endonuclease II; Provisional

Probab=96.28  E-value=0.0058  Score=56.42  Aligned_cols=82  Identities=22%  Similarity=0.454  Sum_probs=56.5

Q ss_pred             CCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCC-------CCccCCCCCChhHHHHHhcceee---------EEe
Q 040614           61 GPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTG-------AHLNSGCDSGRYFEDIFRRGYSI---------VYR  124 (475)
Q Consensus        61 ~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~G-------aHL~~~~~~~~Lf~eif~~g~sI---------~~R  124 (475)
                      --|||-+-    ..| .++|+|+|.|+|.|+.+|=+++       +|+.   .+..|.+.|.. |-.+         +|-
T Consensus        33 ~n~VY~~~----~~~-~viYVGKAknLkkRv~sYf~~~~~r~~~~sn~~---Kt~~L~~~I~~-g~~ve~~~~~cf~~~I  103 (138)
T PHA02598         33 KNVIYAIA----VDD-ELVYIGKTKNLRKRIDYYRNSKNWRNTNTSDIT---KSALLEEALKK-GKKVEFYARQCFNLSI  103 (138)
T ss_pred             ceEEEEEE----eCC-eEEEEeehhhHHHHHHHHhCccccccccccccH---HHHHHHHHHhc-CCceEEEeeccceeEE
Confidence            46888874    223 6899999999999999995554       4653   23466666655 2222         223


Q ss_pred             ecCCCc--hHHHHHHHHHHhhcchhhhcc
Q 040614          125 SAPMKN--KEDAEKTERKILDKFDYAWNK  151 (475)
Q Consensus       125 ~a~t~~--K~~Ae~tE~~lL~~fdYAWN~  151 (475)
                      ..++..  ..+|+-.|.+|+..|+=.||.
T Consensus       104 ~t~~~~~~~~~a~llE~~lIk~~~P~~N~  132 (138)
T PHA02598        104 TNPLGSMTIATMDLEEPKFIKKFNPEWNK  132 (138)
T ss_pred             ecCCCcchhhhHHhhHHHHHHHhCChHHH
Confidence            344433  337888999999999999985

>PRK10545 nucleotide excision repair endonuclease; Provisional

Probab=95.93  E-value=0.0092  Score=60.38  Aligned_cols=81  Identities=22%  Similarity=0.368  Sum_probs=58.8

Q ss_pred             eecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCchH
Q 040614           53 VHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKE  132 (475)
Q Consensus        53 v~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K~  132 (475)
                      +.+||  +-||||=+=   ...|-+++|+|.|.|||+|+.+|=++.       ....    +..+...|-  |-.|.+--
T Consensus        28 l~~LP--~~PGVYlf~---d~~g~~~LYVGKAknLR~RV~syF~~~-------k~~~----m~~~i~~Ie--~i~T~sEl   89 (286)
T PRK10545         28 LEDLP--KLPGVYLFH---GESDTMPLYIGKSVNIRSRVLSHLRTP-------DEAA----MLRQSRRIS--WICTAGEI   89 (286)
T ss_pred             HHhCC--CCCeEEEEE---cCCCCEEEEEechHhHHHHHHHHcCcH-------HHHH----HHHhcceEE--EEEeCCHH
Confidence            67888  899999772   235667899999999999999998641       1123    444444444  45677777


Q ss_pred             HHHHHHHHHhhcchhhhcc
Q 040614          133 DAEKTERKILDKFDYAWNK  151 (475)
Q Consensus       133 ~Ae~tE~~lL~~fdYAWN~  151 (475)
                      +|.-.|.+|+..+---.|+
T Consensus        90 eALLLE~~LIK~~~P~yN~  108 (286)
T PRK10545         90 GALLLEARLIKEQQPLFNK  108 (286)
T ss_pred             HHHHHHHHHHHHhCCcchh
Confidence            9999999998877655543

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=95.02  E-value=0.034  Score=60.98  Aligned_cols=83  Identities=27%  Similarity=0.486  Sum_probs=59.5

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  .-||||=+=   ...|- ++|+|.|.|+|+|+.+|=... |   ...+..|.++|..      +.|-.|.|.
T Consensus         4 kl~~lP--~~PGVYl~~---d~~g~-viYVGKAknLr~Rv~sYF~~~-~---~~K~~~mv~~i~~------ie~ivt~sE   67 (574)
T TIGR00194         4 KLKNLP--DKPGCYLMK---DRNGQ-VLYVGKAKNLKKRVSSYFREN-N---SAKTQALVKQIAD------IEYILTKNE   67 (574)
T ss_pred             hHhhCC--CCCeEEEEE---CCCCC-EEEEecHHHHHHHHHHhcCCC-C---CchHHHHHHhcCe------EEEEEeCCH
Confidence            467888  899999762   23343 399999999999999998853 4   1233456666644      345568888


Q ss_pred             HHHHHHHHHHhhcchhhhc
Q 040614          132 EDAEKTERKILDKFDYAWN  150 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fdYAWN  150 (475)
                      -+|.-.|.+|+..|.=-+|
T Consensus        68 ~eALlLE~~lIK~~~P~YN   86 (574)
T TIGR00194        68 NEALILEANLIKQYQPRYN   86 (574)
T ss_pred             HHHHHHHHHHHHHhCCCcc
Confidence            8999999999886654443

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=94.98  E-value=0.034  Score=61.03  Aligned_cols=80  Identities=25%  Similarity=0.439  Sum_probs=57.2

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  .-||||=+-   . .| -++|+|.|.|+|+|+.+|=+.  | .  ..+..|.++|..    |  -|-.|.|.
T Consensus         9 k~~~LP--~~PGVYl~~---d-~g-~viYVGKAknLr~RV~sYF~~--~-~--~k~~~lv~~i~~----i--e~i~t~sE   70 (577)
T PRK14668          9 RAAELP--REPGVYQFV---A-GG-TVLYVGKAVDLRDRVRSYADP--R-S--ERIRRMVERADD----I--DFAVTDTE   70 (577)
T ss_pred             HHHhCC--CCCEEEEEc---C-CC-eEEEeeCcHhHHHHHHHHcCC--C-C--hHHHHHHHhhCe----E--EEEEeCCH
Confidence            578899  899999974   2 45 569999999999999999642  2 1  122345555533    3  34457788


Q ss_pred             HHHHHHHHHHhhcchhhh
Q 040614          132 EDAEKTERKILDKFDYAW  149 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fdYAW  149 (475)
                      -+|.-.|..|+..|.=-+
T Consensus        71 ~eALlLE~~LIK~~~P~Y   88 (577)
T PRK14668         71 TQALLLEANLIKRHQPRY   88 (577)
T ss_pred             HHHHHHHHHHHHHhCCcc
Confidence            899999999988654444

>PRK07883 hypothetical protein; Validated

Probab=94.83  E-value=0.038  Score=60.11  Aligned_cols=82  Identities=23%  Similarity=0.339  Sum_probs=59.3

Q ss_pred             ceeeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCC
Q 040614           50 RYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMK  129 (475)
Q Consensus        50 RyRv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~  129 (475)
                      |-.+.+||  .-||||=+=   ...|- ++|+|.|.|+|+|+.+|=+...|-.   .+..|.++|-.      +.|-.|.
T Consensus       208 ~~~~~~lP--~~PGVY~~~---d~~g~-viYVGKAknLr~Rv~sYF~~~~~~~---k~~~lv~~i~~------ie~i~t~  272 (557)
T PRK07883        208 RHLADGLP--HAPGVYLFR---GPSGE-VLYVGTAVNLRRRVRSYFTAAETRG---RMREMVALAER------VDHVECA  272 (557)
T ss_pred             hHHHhhCC--CCceEEEEE---CCCCc-EEEeehhhhHHHHHHHHcCCCCCCc---hHHHHHhhhce------EEEEEeC
Confidence            34678888  899999773   23343 8999999999999999987543211   23456666633      3455688


Q ss_pred             chHHHHHHHHHHhhcch
Q 040614          130 NKEDAEKTERKILDKFD  146 (475)
Q Consensus       130 ~K~~Ae~tE~~lL~~fd  146 (475)
                      +.-+|.-.|..|+..+.
T Consensus       273 sE~eAllLE~~lIk~~~  289 (557)
T PRK07883        273 HALEAEVRELRLIAAHK  289 (557)
T ss_pred             CHHHHHHHHHHHHHHhC
Confidence            88899999999988553

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=94.83  E-value=0.04  Score=61.05  Aligned_cols=81  Identities=26%  Similarity=0.509  Sum_probs=58.6

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  .-||||=+=   ...| -++|+|.|.|+|+|+.+|=+...+..  ..+..|.++|..      +.|-.|.|.
T Consensus         6 kl~~lP--~~PGVYl~~---d~~g-~viYVGKAknLr~RV~sYF~~~~~~~--~K~~~lv~~i~~------ie~i~t~sE   71 (624)
T PRK14669          6 KIRTLP--TSPGVYLYK---NAGG-EVIYVGKAKNLRSRVRSYFSEDKLGN--IKTGSLIREAVD------IDYILVDNE   71 (624)
T ss_pred             HHHhCC--CCCeEEEEE---CCCC-CEEEeeCchhHHHHHHHHhccCccCC--hHHHHHHHhhce------EEEEEeCCH
Confidence            467888  899999872   2333 37899999999999999988653222  123456666644      445567888


Q ss_pred             HHHHHHHHHHhhcch
Q 040614          132 EDAEKTERKILDKFD  146 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fd  146 (475)
                      -+|.-.|..|+..|.
T Consensus        72 ~EALlLE~~LIk~~~   86 (624)
T PRK14669         72 KEALALENNLIKQYK   86 (624)
T ss_pred             HHHHHHHHHHHhhhC
Confidence            899999999988654

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=94.18  E-value=0.058  Score=59.33  Aligned_cols=81  Identities=23%  Similarity=0.484  Sum_probs=57.0

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  .-||||=+=   ...|. ++|+|.|.|+|+|+.+|=+...|..   .+..|.++|..      +-|-.|.|-
T Consensus         7 ~l~~lP--~~PGVY~~~---d~~g~-viYVGKAknLr~Rv~sYF~~~~~~~---k~~~lv~~i~~------ie~i~t~sE   71 (598)
T PRK00558          7 KLKTLP--DSPGVYRMK---DANGT-VIYVGKAKNLKNRVRSYFRKSHDSP---KTRAMVSEIAD------IEYIVTRSE   71 (598)
T ss_pred             HHhhCC--CCCeEEEEE---CCCCC-EEEecCchhHHHHHHhhCCCCCcCh---HHHHHHHhcCe------EEEEEeCCH
Confidence            467888  799999772   23343 4999999999999999987543322   22345555533      334567788


Q ss_pred             HHHHHHHHHHhhcchh
Q 040614          132 EDAEKTERKILDKFDY  147 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fdY  147 (475)
                      -+|.-.|..|+..+-=
T Consensus        72 ~eALlLE~~LIK~~~P   87 (598)
T PRK00558         72 TEALLLENNLIKKYKP   87 (598)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            8999999999885543

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=93.96  E-value=0.083  Score=57.47  Aligned_cols=80  Identities=23%  Similarity=0.375  Sum_probs=56.3

Q ss_pred             eecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCchH
Q 040614           53 VHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKE  132 (475)
Q Consensus        53 v~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K~  132 (475)
                      +.+||  .-||||-+=   ...| -++|+|.|.|+|+|+.+|=+...| .  ..+..|.++|..      +-|-.|.+.-
T Consensus         4 l~~lP--~~PGVYl~~---d~~g-~vIYVGKAknLr~RV~sYF~~~~~-~--~K~~~lv~~i~~------ie~ivt~sE~   68 (519)
T PRK12306          4 LSTIP--TNPGCYLYK---DEEG-TIIYVGKAKNLKKRVSSYFQKKDH-D--PKTQSLVKAIRD------IEFIVTDNEV   68 (519)
T ss_pred             hhHCC--CCCeEEEEE---CCCC-CEEEeccchhHHHHHHHhCCCCCC-C--hHHHHHHHHhcE------EEEEEeCCHH
Confidence            56788  789999873   2334 349999999999999999875222 2  122346666644      3344577888


Q ss_pred             HHHHHHHHHhhcchh
Q 040614          133 DAEKTERKILDKFDY  147 (475)
Q Consensus       133 ~Ae~tE~~lL~~fdY  147 (475)
                      +|.-.|..|+..+.=
T Consensus        69 eALlLE~~LIK~~~P   83 (519)
T PRK12306         69 EALLLENTLIKKHWP   83 (519)
T ss_pred             HHHHHHHHHHHHhCc
Confidence            999999999885543

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=93.85  E-value=0.087  Score=57.86  Aligned_cols=79  Identities=16%  Similarity=0.316  Sum_probs=57.1

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  .-||||=+=    ..| -++|+|.|.|+|+|+.+|=+. ++..  ..+..|.++|..      +-|-.|.|.
T Consensus         9 ~l~~lP--~~PGVYl~~----~~g-~viYVGKAknLr~RV~sYF~~-~~~~--~K~~~lv~~i~~------ie~i~t~sE   72 (567)
T PRK14667          9 LIEKAP--EEPGVYLFK----KKK-RYIYIGKAKNIKNRLLQHYKQ-SETD--PKERAIFSESSS------LEWIITRNE   72 (567)
T ss_pred             HHHhCC--CCCeEEEEe----cCC-eEEEeeCcHhHHHHHHHHcCC-CCCC--hHHHHHHHhhCe------EEEEEeCCH
Confidence            477899  899999774    222 478999999999999999874 3222  123456666644      334567888


Q ss_pred             HHHHHHHHHHhhcch
Q 040614          132 EDAEKTERKILDKFD  146 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fd  146 (475)
                      -+|.-.|.+|+..+.
T Consensus        73 ~EALlLE~~LIK~~~   87 (567)
T PRK14667         73 YEALVLEIDLIQQYK   87 (567)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            899999999988554

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=93.68  E-value=0.096  Score=58.01  Aligned_cols=83  Identities=27%  Similarity=0.447  Sum_probs=59.0

Q ss_pred             ceeeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCC
Q 040614           50 RYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMK  129 (475)
Q Consensus        50 RyRv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~  129 (475)
                      +..+.+||  .-||||=+=   ...|- ++|+|.|.|+|+|+.+|=+...+..  ..+..|.++|..      +.|-.|.
T Consensus        13 ~~~l~~lP--~~PGVYl~~---d~~g~-viYVGKAknLr~RV~sYF~~~~~~~--~K~~~lv~~i~~------ie~i~t~   78 (621)
T PRK14671         13 VEKLASLP--TSPGVYQFK---NAAGR-VIYVGKAKNLRNRVRSYFRNSRQLS--GKTLVLVGHIAD------LEVIITS   78 (621)
T ss_pred             HHHHHhCC--CCCeEEEEE---CCCCC-EEEeecchhHHHHHHHHcCCCCCCC--hHHHHHHHhhce------EEEEEeC
Confidence            34678899  899999773   23342 4999999999999999987544322  122345666644      3455678


Q ss_pred             chHHHHHHHHHHhhcch
Q 040614          130 NKEDAEKTERKILDKFD  146 (475)
Q Consensus       130 ~K~~Ae~tE~~lL~~fd  146 (475)
                      +.-+|.-.|.+|+..|-
T Consensus        79 sE~EALlLE~~LIk~~~   95 (621)
T PRK14671         79 SEVEALILENNLIKELK   95 (621)
T ss_pred             CHHHHHHHHHHHHHHhC
Confidence            88899999999988553

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=93.62  E-value=0.068  Score=58.93  Aligned_cols=82  Identities=26%  Similarity=0.405  Sum_probs=60.3

Q ss_pred             eecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCchH
Q 040614           53 VHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKE  132 (475)
Q Consensus        53 v~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K~  132 (475)
                      +.+||  +-||||-+-=   .. =.|.|+|.|.|+|.|+++|-+...|    ..+..|..+|..      +.|-.|++-.
T Consensus         9 l~~lP--~~PGvY~~~d---~~-g~VlYVGKAknLr~Rv~sYF~~~~~----~kt~~lv~~i~~------iE~ivt~~E~   72 (581)
T COG0322           9 LKNLP--HSPGVYLMKD---EN-GTVLYVGKAKNLRKRVSSYFRGRLD----PKTAALVENIAD------IEYIVTDTET   72 (581)
T ss_pred             HHhCC--CCCeeEEEEC---CC-CCEEEEeehhhHHHHHHHhhcCCCc----HHHHHHHHhhcc------eeEEEeCCHH
Confidence            77888  8999997631   11 3579999999999999999987777    223456666644      2334577788


Q ss_pred             HHHHHHHHHhhcchhhhc
Q 040614          133 DAEKTERKILDKFDYAWN  150 (475)
Q Consensus       133 ~Ae~tE~~lL~~fdYAWN  150 (475)
                      +|.-.|..|+.+|.=-.|
T Consensus        73 EALlLE~nLIK~~~PrYN   90 (581)
T COG0322          73 EALLLENNLIKKHKPRYN   90 (581)
T ss_pred             HHHHHHHhHHHhhCCcee
Confidence            999999999987764443

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=93.41  E-value=0.11  Score=58.52  Aligned_cols=81  Identities=22%  Similarity=0.394  Sum_probs=57.2

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  .-||||=+=   ...| -++|+|.|.|+|+|+.+|=+...+..  ..+..|.++|..      +.|-.|.+.
T Consensus         5 ~l~~LP--~~PGVYlfk---D~~G-~VIYVGKAKNLR~RV~SYF~~~~~~~--~K~~~Lv~~i~~------Ie~ivT~sE   70 (694)
T PRK14666          5 DLSTIP--LTPGVYLYK---DEAG-RIIYVGKARHLRRRVASYFRDVSALT--PKTVAMLRHAVT------IDTLSTTTE   70 (694)
T ss_pred             hHhhCC--CCCeEEEEE---CCCC-CEEEeeCcHhHHHHHHHHcCCCCCCC--hHHHHHHHhcCe------eEEEEeCCH
Confidence            467888  899999873   2334 34999999999999999986433222  122355655544      344567888


Q ss_pred             HHHHHHHHHHhhcch
Q 040614          132 EDAEKTERKILDKFD  146 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fd  146 (475)
                      -+|.-.|..|+..|.
T Consensus        71 ~EALLLE~~LIK~~k   85 (694)
T PRK14666         71 KEALLLEASLIKKHR   85 (694)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            899999999988653

>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=91.52  E-value=0.24  Score=38.46  Aligned_cols=62  Identities=15%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             EEeecchhhHHHHHHhccC-CCCCccCCCCCChhHHHHHhcceeeEEeecCCCchHHHHHHHHHHhhcchh
Q 040614           78 VVYVGQAESVRARLQAYGR-TGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDY  147 (475)
Q Consensus        78 vvYlGqa~nvR~RLq~Ygr-~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K~~Ae~tE~~lL~~fdY  147 (475)
                      .+|+|+|.|++.||.+|-. .+.+-..     .+.  --...+.+. =+....+..++...|..++..|+-
T Consensus        14 ~~YIG~t~nl~~R~~~H~~~~~~~~~~-----~~~--~~~~~~~~~-~~~~~~~~~~~~~~E~~~i~~~~~   76 (80)
T PF01541_consen   14 KIYIGSTKNLKKRLNEHFSGNKSKKKK-----QKK--YGWDNFEFI-IIEEFNTKSEALKLEQYLIKKLKP   76 (80)
T ss_dssp             EEEEEEESSHHHHHHHHHHHCTHCSHC-----HHH--HHSSCEEEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCHHHHHHHHhcCCCCCcch-----hhh--cccccEEEE-eeEEeCCHHHHHHHHHHHHHHHcC
Confidence            4699999999999998722 2222110     111  112223332 133455666779999999998876

The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=91.19  E-value=0.31  Score=54.99  Aligned_cols=84  Identities=24%  Similarity=0.363  Sum_probs=58.7

Q ss_pred             ceeeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCC
Q 040614           50 RYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMK  129 (475)
Q Consensus        50 RyRv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~  129 (475)
                      +-.+.+||  .-||||=+=   ...| -++|+|.|.|+|+|+.+|=+. +|=.   .+..|.++|..      +-|-.|.
T Consensus        12 ~~~~~~LP--~~PGVYlfk---d~~G-~VLYVGKAKNLR~RV~SYF~~-~~~~---K~~~Lv~~i~~------Ie~ivT~   75 (691)
T PRK14672         12 RIQALSAP--STSGVYLWK---DVHG-VVIYVGKAKSLRTRLTSYFRC-RHDP---KTRVLMSRAAA------LEYLQTQ   75 (691)
T ss_pred             HHHHHhCC--CCCeEEEEE---CCCC-CEEEeeCcHHHHHHHHHHcCC-CCCc---hHHHHHHhhCc------EEEEEeC
Confidence            44678899  899999873   1222 468999999999999999875 3311   11235555543      3344678


Q ss_pred             chHHHHHHHHHHhhcchhhh
Q 040614          130 NKEDAEKTERKILDKFDYAW  149 (475)
Q Consensus       130 ~K~~Ae~tE~~lL~~fdYAW  149 (475)
                      +.-+|.-.|.+|+..|-=..
T Consensus        76 sE~EALLLE~~LIK~~kP~Y   95 (691)
T PRK14672         76 HEYEALLLENTLIKKHTPRY   95 (691)
T ss_pred             CHHHHHHHHHHHHHHhCchh
Confidence            88899999999988664444

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=84.44  E-value=1.1  Score=49.57  Aligned_cols=59  Identities=14%  Similarity=0.283  Sum_probs=43.9

Q ss_pred             EEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCchHHHHHHHHHHhhcch
Q 040614           78 VVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFD  146 (475)
Q Consensus        78 vvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K~~Ae~tE~~lL~~fd  146 (475)
                      ++|+|.|.|+|+|+.+|=+. +| .  ..+..|.++|..      +-|-.|.|.-+|.-.|..|+..|.
T Consensus         8 vIYVGKAknLr~RV~sYF~~-~~-~--~K~~~lv~~i~~------ie~ivt~sE~EALlLE~~LIK~~~   66 (574)
T PRK14670          8 ILYIGKAKNLRSRVKNYFLE-KI-S--HKTKILMKNVKN------IEVITTNSEYEALLLECNLIKTHK   66 (574)
T ss_pred             EEEeeCcHhHHHHHHHHcCC-CC-C--chHHHHHHhcCe------EEEEEeCCHHHHHHHHHHHHHHhC
Confidence            68999999999999999875 23 1  233456666644      344567888899999999988553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 44/327 (13%), Positives = 85/327 (25%), Gaps = 102/327 (31%)

Query: 15  EDCERTNHDSQFSKWK-ELVGPSD------------W-ENHSHGKEGAERYK-VHNLPND 59
           E+  R N+    S  K E   PS             + +N    K    R +    L   
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ- 142

Query: 60  TGPGLYEL----GIAV---PGAG--VIVVYVGQAESVRARLQAYGRTGAH-LNSG-CDSG 108
               L EL     + +    G+G   + + V  +  V+ ++          LN   C+S 
Sbjct: 143 ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSP 195

Query: 109 RYFEDIFRRGYSIVYRSAPMKNKEDAEKTERKILDKFDYAWNKGNNGKRRHADVRRK--- 165
              E +      ++Y+  P      ++ +    L       +      RR    +     
Sbjct: 196 ---ETVLEMLQKLLYQIDPNWT-SRSDHSSNIKLRI-----HSIQAELRRLLKSKPYENC 246

Query: 166 ---LDEVASNNIQFPKTIRNLLRFNHWPA-DIKIKASPEGHNFLPQIIKFTKSQPRLVLD 221
              L  V +                 W A ++  K                     L+  
Sbjct: 247 LLVLLNVQNAKA--------------WNAFNLSCKI--------------------LLTT 272

Query: 222 RYG--ADEGHTGICGVSLGDGSVCQMPPVEQRKRCIEHRGMRIRASTLTMKGK---AKVC 276
           R+    D          L   +   +                +    L  + +    +V 
Sbjct: 273 RFKQVTD---------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 277 DVDPTKLPMVAQKCSVSEGEERNRRKN 303
             +P +L ++A+       +      N
Sbjct: 324 TTNPRRLSIIAESIR----DGLATWDN 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
1yd6_A	99	UVRC; DNA binding protein; 2.00A {Bacillus caldote	97.36
1yd0_A	96	Uvrabc system protein C; DNA binding protein; 1.50	97.29
2wsh_A	143	Endonuclease II; GIY-YIG, hydrolase; 1.90A {Entero	96.29

>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}

Probab=97.36  E-value=0.00034  Score=59.21  Aligned_cols=84  Identities=25%  Similarity=0.369  Sum_probs=61.2

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  +.||||-+-   ...| -++|+|+|.|+|+|+.+|=+.. |-       .=...+.++...|  .|-.|.+.
T Consensus         8 ~l~~lP--~~pGVY~~~---d~~g-~vlYVGKAknLr~Rv~syf~~~-~~-------~k~~~m~~~~~~i--~~~~t~sE   71 (99)
T 1yd6_A            8 KLAVLP--EQPGCYLMK---DKHG-TVIYVGKAKSLKERVRSYFTGT-HD-------GKTQRLVEEIADF--EYIVTSSN   71 (99)
T ss_dssp             HHHTCC--SSCEEEEEE---CSSC-CEEEEEEESCHHHHHHGGGSSC-CC-------HHHHHHHHHCSEE--EEEECSSH
T ss_pred             HHHhCC--CCCeEEEEE---cCCC-CEEEEecCcCHHHHHHHHcccC-CC-------hHHHHHHHheeEE--EEEEECCH
Confidence            467788  799999883   3344 3789999999999999997664 31       1123344555555  45578888


Q ss_pred             HHHHHHHHHHhhcchhhhcc
Q 040614          132 EDAEKTERKILDKFDYAWNK  151 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fdYAWN~  151 (475)
                      .+|+-.|..|+..+.=-+|.
T Consensus        72 ~eAlllE~~lIk~~~P~yN~   91 (99)
T 1yd6_A           72 AEALILEMNLIKKHDPKYNV   91 (99)
T ss_dssp             HHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHhCCcchh
Confidence            89999999999987766654

>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A

Probab=97.29  E-value=0.00042  Score=58.39  Aligned_cols=83  Identities=23%  Similarity=0.366  Sum_probs=61.1

Q ss_pred             eeecCCCCCCCceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCCCCChhHHHHHhcceeeEEeecCCCch
Q 040614           52 KVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAPMKNK  131 (475)
Q Consensus        52 Rv~nLp~~~~pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~~~~~Lf~eif~~g~sI~~R~a~t~~K  131 (475)
                      .+.+||  +.||||-+-   . .|- ++|+|+|.|+|+|+.+|=+.. +        .=...+.++...|-  |-.|.+.
T Consensus         8 ~l~~lP--~~pGVY~~~---d-~g~-vlYVGKAknLr~Rv~syf~~~-~--------~k~~~~~~~~~~i~--~~~t~sE   69 (96)
T 1yd0_A            8 KILLAP--EEPGVYIFK---N-KGV-PIYIGKAKRLSNRLRSYLNPQ-T--------EKVFRIGEEADELE--TIVVMNE   69 (96)
T ss_dssp             HHHHCC--SSCEEEEEE---E-TTE-EEEEEEESSHHHHHHGGGSCS-S--------HHHHHHHHHCSEEE--EEECSSH
T ss_pred             HHHhCC--CCCeEEEEE---C-CCe-EEEEecCcCHHHHHHHHccCC-C--------HHHHHHHHhccEEE--EEEECCH
Confidence            366788  799999883   2 343 689999999999999997654 1        11233555556554  4568888


Q ss_pred             HHHHHHHHHHhhcchhhhccC
Q 040614          132 EDAEKTERKILDKFDYAWNKG  152 (475)
Q Consensus       132 ~~Ae~tE~~lL~~fdYAWN~~  152 (475)
                      .+|+-.|..|+..|.=-||..
T Consensus        70 ~eAlllE~~lIk~~~P~yN~~   90 (96)
T 1yd0_A           70 REAFILEANLIKKYRPKYNVR   90 (96)
T ss_dssp             HHHHHHHHHHHHHHCCTTCC-
T ss_pred             HHHHHHHHHHHHHhCCCchhh
Confidence            899999999999887777653

>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}

Probab=96.29  E-value=0.0032  Score=57.08  Aligned_cols=94  Identities=15%  Similarity=0.252  Sum_probs=59.6

Q ss_pred             eecCCCCCC-CceeeeeeecCCCcEEEEeecchhhHHHHHHhccCCCCCccCCC----CCChhHHHHHh-cceeeEEe-e
Q 040614           53 VHNLPNDTG-PGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGC----DSGRYFEDIFR-RGYSIVYR-S  125 (475)
Q Consensus        53 v~nLp~~~~-pGlYELGVa~~~~~vvvvYlGqa~nvR~RLq~Ygr~GaHL~~~~----~~~~Lf~eif~-~g~sI~~R-~  125 (475)
                      +..||...+ ||||-+-+    .| -++|+|+|.|+|.|+.+|-+.. +.....    .+.-|.++|-+ ...-+++| +
T Consensus        31 l~~lp~~pG~~GVY~~~~----~g-~ViYVGKAknLkkRv~sYf~~~-~~~~~~~~~~Kt~~mv~~i~~g~~ve~i~~~~  104 (143)
T 2wsh_A           31 IKQLSIPNKYNVIYAIAI----ND-ELVYIGKTKNLRKRINYYRTAI-NRKDKTSDSTKSALIHSALKEGSKVEFYARQC  104 (143)
T ss_dssp             BCCCCCCCCCSEEEEEEE----TT-EEEEEEEESCHHHHHHHHHHHH-HTTCCSSCCHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred             cccCcCCCCCceEEEEEc----CC-eEEEEEecccHhHHHHHhcCCC-CcccccCCCHHHHHHHHHHhcCCcEEEEEecc
Confidence            566775444 66997762    33 4689999999999999996542 211110    11346666653 12333322 1


Q ss_pred             c---CCCch-----HHHHHHHHHHhhcchhhhccC
Q 040614          126 A---PMKNK-----EDAEKTERKILDKFDYAWNKG  152 (475)
Q Consensus       126 a---~t~~K-----~~Ae~tE~~lL~~fdYAWN~~  152 (475)
                      -   .|.+.     .+|.-.|..|+..|+=-||-.
T Consensus       105 ~~~~vt~~e~~~~e~eAllLE~nLIK~~~P~yNi~  139 (143)
T 2wsh_A          105 FNLSMTNELGTMTIATIDLEAPLFIKLFNPPWNIQ  139 (143)
T ss_dssp             CEEEEEETTEEEEEETHHHHHHHHHHHHCCTTCCC
T ss_pred             cceeEecCCCccchhHHHHHHHHHHHHhCCccHhh
Confidence            1   34442     489999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	475
d1mk0a_	97	Homing endonuclease I-TevI {Bacteriophage T4 [TaxI	91.26

>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a+b)
fold: GIY-YIG endonuclease
superfamily: GIY-YIG endonuclease
family: GIY-YIG endonuclease
domain: Homing endonuclease I-TevI
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.26  E-value=0.11  Score=40.20  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=42.7

Q ss_pred             EEeecchhhHHHHHHhccC---CCCCccCCCCCChhHHHHHhcc--e--eeEEeecCCCchHHHHHHHHHHhhcch
Q 040614           78 VVYVGQAESVRARLQAYGR---TGAHLNSGCDSGRYFEDIFRRG--Y--SIVYRSAPMKNKEDAEKTERKILDKFD  146 (475)
Q Consensus        78 vvYlGqa~nvR~RLq~Ygr---~GaHL~~~~~~~~Lf~eif~~g--~--sI~~R~a~t~~K~~Ae~tE~~lL~~fd  146 (475)
                      .+|+|+|.|++.|+.+|-+   .+.|..     ..|...|..-|  |  .|+-  -.+.++++++..|..++++|+
T Consensus        15 k~YIG~t~nl~~R~~~h~~~~~~~~~~~-----~~l~~~~~k~g~~F~~~ile--~~~~~~~~l~~~E~~~I~~l~   83 (97)
T d1mk0a_          15 KVYVGSAKDFEKRWKRHFKDLEKGCHSS-----IKLQRSFNKHGNVFECSILE--EIPYEKDLIIERANFWIKELN   83 (97)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHHTCCSC-----HHHHHHHHHHSSCEEEEEEE--ECCCCHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEeCcHHHHHHHHHHHhhccCCcc-----HHHHHHHHhccCcEEEEEEE--EcCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999998843   344443     35666665555  2  2222  134567789999999998875