Citrus Sinensis ID: 040625

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
Protein Sequence
CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLNNYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRAPAEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEMEAYRMKKIHHDDPMKDFLY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHcccccccccccccccccccHHHHHHcccccEEEEcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEcccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccEEEccccccccEEccEEHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHccccEEEEccccEEEccccccccccccHHccEcccccEEEEccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHcccccHHHHHcc
Coil and Loop (DISEMBL)
cgamthnakscmerprkigakwtnmhiapdekiesfeldydgkrdrwngfdpaTYALVIERYEARDEARRKYLKEQQLKKLEEknskqngeggvseedddedalkvdeakvdeskqmDFAKVEKRVrttgggstgtvrnlRIREDTAKYLLNLdvnsayydpktrsmredplpdadpnekfyggdnqnrlsgqalefkqlnNYNVIKEKLKSRLKDIIAEkygnaaseeeiPRELLLGQSERQVEYDRAGRIIqgvesflprskyeedvyINNHTsvwgswwkdhqwgykccKQTIKNNLMKANVARKAasedmrapaeeknlatwgtdvpdnlnLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEMEAYRMKkihhddpmkdfly
Flexible Loop (DISEMBL)
cgamthnakscmerprkigAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKeqqlkkleeknskqngeggvseedddedalkvdeakvdeskqmdfakvekrvrttgggstgtvrnlrireDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLNNYNVIKEKLKSRLKDIIAEKygnaaseeeiprelllgqsERQVEYDRAGRIIQgvesflprskyEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRAPAEEKnlatwgtdvpdnlNLDQKQLAEAlrkederkkeekderkrkynvrwndevtaEEMEAYrmkkihhddpmkdfly
Low Complexity Region (SEG)
CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEARDEARRkylkeqqlkkleeknskqNgeggvseedddedALKVDEAKVDESKQMDFAKVEKRVRttgggstgtVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLNNYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRAPAEEKNLATWGTDVPDNLNLDQKQLAEALrkederkkeekderkrkYNVRWNDEVTAEEMEAYRMKKIHHDDPMKDFLY
Disordered region (IsUnstruct)
******************GAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEA************************************************************************VRNLRIREDTAKYLLNLDVNSAYY**********************************LEFKQLNNYNVIKEKLKSRLKDIIAEKYG************LL*****QVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKA********************************************************************************************
Disordered Region (DISOPRED)
C***THNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYE*********************************************************************************DTAKYLLNLDVNSAYYDP*******************YGGDN******************************************************************************YEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLM******************************************************************************RMK**HHDDPMKDFL*
Disordered Region (DISEMBL)
***********MERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLKKLE*********************LKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLNNYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKAN****************KNLATWGTDVPDNLNLDQKQLAEAL****************KYNVRWNDEVTAEEMEAYRMKKIHHDDPMKDFLY
Disordered Region (DISPRO)
**********CMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLK************************************Q*DFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLNNYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRAP*********************KQLAEALR***************************E*********IHHDDPMK*FL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQxxxxxxxxxxxxxxxxxxxxxKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRAPAEEKNLATWGTDVPDNLNLDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWNDEVTAEEMEAYRMKKIHHDDPMKDFLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	395	2.2.26 [Sep-21-2011]
Q6ZK48	536	Pre-mRNA-splicing factor	yes	no	1.0	0.736	0.716	1e-171
A2YQU8	536	Pre-mRNA-splicing factor	N/A	no	1.0	0.736	0.716	1e-171
Q9SHY8	535	Pre-mRNA-splicing factor	yes	no	0.997	0.736	0.688	1e-167
O23174	536	Pre-mRNA-splicing factor	no	no	0.994	0.733	0.676	1e-165
P0CR52	574	Pre-mRNA-splicing factor	yes	no	0.972	0.668	0.393	2e-72
P0CR53	574	Pre-mRNA-splicing factor	N/A	no	0.972	0.668	0.393	2e-72
Q5ZIG2	564	Pre-mRNA-splicing factor	yes	no	0.959	0.671	0.393	5e-71
Q5U3F2	571	Pre-mRNA-splicing factor	yes	no	0.954	0.660	0.384	1e-70
Q8BHJ9	585	Pre-mRNA-splicing factor	yes	no	0.977	0.659	0.383	3e-70
Q3ZBE5	586	Pre-mRNA-splicing factor	yes	no	0.977	0.658	0.380	6e-69

>sp|Q6ZK48|SLU7_ORYSJ Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1

 Score =  602 bits (1551), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/438 (71%), Positives = 356/438 (81%), Gaps = 43/438 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+ KSCMERPR +GAKWTN++IAPDEK+ESFELDYDGKRDRWNG+DP+TY  VI 
Sbjct: 99  CGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIA 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
            YEAR+EAR+KYLKEQQLKKLEEK+ ++  E   SEE+D+ED LK+DEAKVDES QMDFA
Sbjct: 159 DYEAREEARKKYLKEQQLKKLEEKDGEEGDENVASEEEDEEDGLKIDEAKVDESAQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN+K
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQNRLSGQALEFKQLN                           ++ + KEKLKS 
Sbjct: 279 FYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKSE 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASEE IPRELLLGQSE+++EYDR GRII+G +  LP+SKYEEDV+INN
Sbjct: 339 NKDKIMEKYGNAASEEPIPRELLLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQTI+N                +LMKAN+ARK A+ED    
Sbjct: 399 HTTVWGSWWKDHQWGYKCCKQTIRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVR 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWGTDVP+++ LD+K L EAL+KE  R+KEE DERKRKYNV+WNDEVTAE+ME
Sbjct: 459 HEEKRLATWGTDVPNDIVLDKKLLDEALKKEGARRKEEMDERKRKYNVKWNDEVTAEDME 518

Query: 378 AYRMKKIHHDDPMKDFLY 395
           AYRMK+IHHDDPM+DFL+
Sbjct: 519 AYRMKRIHHDDPMRDFLH 536

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YQU8|SLU7_ORYSI Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2

 Score =  602 bits (1551), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 314/438 (71%), Positives = 356/438 (81%), Gaps = 43/438 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+ KSCMERPR +GAKWTN++IAPDEK+ESFELDYDGKRDRWNG+DP+TY  VI 
Sbjct: 99  CGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIA 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
            YEAR+EAR+KYLKEQQLKKLEEK+ ++  E   SEE+D+ED LK+DEAKVDES QMDFA
Sbjct: 159 DYEAREEARKKYLKEQQLKKLEEKDGEEGDENVASEEEDEEDGLKIDEAKVDESAQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN+K
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQNRLSGQALEFKQLN                           ++ + KEKLKS 
Sbjct: 279 FYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKSE 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASEE IPRELLLGQSE+++EYDR GRII+G +  LP+SKYEEDV+INN
Sbjct: 339 NKDKIMEKYGNAASEEPIPRELLLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQTI+N                +LMKAN+ARK A+ED    
Sbjct: 399 HTTVWGSWWKDHQWGYKCCKQTIRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVR 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWGTDVP+++ LD+K L EAL+KE  R+KEE DERKRKYNV+WNDEVTAE+ME
Sbjct: 459 HEEKRLATWGTDVPNDIVLDKKLLDEALKKEGARRKEEMDERKRKYNVKWNDEVTAEDME 518

Query: 378 AYRMKKIHHDDPMKDFLY 395
           AYRMK+IHHDDPM+DFL+
Sbjct: 519 AYRMKRIHHDDPMRDFLH 536

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SHY8|SLU7A_ARATH Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2

 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 301/437 (68%), Positives = 356/437 (81%), Gaps = 43/437 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH AK+CM+RPRKIGAK+TNM+IAPDEKIESFELDYDGKRDRWNG+DP+TY  VI+
Sbjct: 99  CGAMTHTAKACMDRPRKIGAKYTNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVID 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
            YEA+++AR+KYLKEQQLKKLEEKN+ + G+   S+ ++DED L+VDEAKVDES+QMDFA
Sbjct: 159 LYEAKEDARKKYLKEQQLKKLEEKNNNEKGDDANSDGEEDEDDLRVDEAKVDESRQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPN+K
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQ R SGQALEFKQLN                           ++ V KEKLKS+
Sbjct: 279 FYLGDNQYRNSGQALEFKQLNIHSWEAFDKGQDMHMQAAPSQAELLYKSFQVAKEKLKSQ 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I +KYGNAA+E+EIP ELLLGQSERQVEYDRAGRII+G E  LP+SKYEEDV+ NN
Sbjct: 339 TKDTIMDKYGNAATEDEIPMELLLGQSERQVEYDRAGRIIKGQEVILPKSKYEEDVHANN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HTSVWGS+WKDHQWGYKCC+Q I+N                +LMKAN+ARK A+E+    
Sbjct: 399 HTSVWGSYWKDHQWGYKCCQQIIRNSYCTGSAGIEAAEAALDLMKANIARKEATEESPKK 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK +A+WGTD+P++L L+++ LA AL+KED  ++EEKDERKRKYNV++N++VT EEME
Sbjct: 459 VEEKRMASWGTDIPEDLELNEEALANALKKEDLSRREEKDERKRKYNVKYNNDVTPEEME 518

Query: 378 AYRMKKIHHDDPMKDFL 394
           AYRMK++HH+DPMKDFL
Sbjct: 519 AYRMKRVHHEDPMKDFL 535

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.

Arabidopsis thaliana (taxid: 3702)

>sp|O23174|SLU7B_ARATH Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3

 Score =  582 bits (1499), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/436 (67%), Positives = 354/436 (81%), Gaps = 43/436 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH++K+CM+RPRKIGAK+TNM+IA DEKIESFELDYDGKRDRWNG+D +TY  V++
Sbjct: 99  CGAMTHSSKACMDRPRKIGAKYTNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVD 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
           RY+A++EAR+KYLKEQQLKKLEEKN+ +NG+   S+ ++D D L+VDEAKVDES+QMDFA
Sbjct: 159 RYDAKEEARKKYLKEQQLKKLEEKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPNEK
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQ R SGQALEFKQ+N                           N+ V KEKLK++
Sbjct: 279 FYLGDNQYRNSGQALEFKQINIHSCEAFDKGHDMHMQAAPSQAELLYKNFKVAKEKLKTQ 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAA+E EIP ELLLGQSERQ+EYDRAGRI++G E  +P+SKYEEDV+ NN
Sbjct: 339 TKDTIMEKYGNAATEGEIPMELLLGQSERQIEYDRAGRIMKGQEVIIPKSKYEEDVHANN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HTSVWGSWWKDHQWGYKCC+QTI+N                +LMKAN+ARK AS++    
Sbjct: 399 HTSVWGSWWKDHQWGYKCCQQTIRNSYCTGSAGIEAAEASIDLMKANIARKEASKESPKK 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK +ATWGTD+P++L L+++ LA AL+KED  ++EEKDERKRKYNV + ++VT+EEME
Sbjct: 459 VEEKKMATWGTDIPEDLELNEEALANALKKEDLSRREEKDERKRKYNVNYTNDVTSEEME 518

Query: 378 AYRMKKIHHDDPMKDF 393
           AYRMK++HH+DPM++F
Sbjct: 519 AYRMKRVHHEDPMRNF 534

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CR52|SLU7_CRYNJ Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SLU7 PE=3 SV=1

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 186/473 (39%), Positives = 263/473 (55%), Gaps = 89/473 (18%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH  K C+ERPRK GAK+TN  IAPDE ++ FE DYD KRDRWNG+DPA+Y  V+E
Sbjct: 105 CGAMTHKMKDCVERPRKRGAKFTNKDIAPDELVQQFEGDYDAKRDRWNGYDPASYKHVVE 164

Query: 61  RYEARDEARRKYLKE---QQLKK---LEEKNSKQNGEGGVSEEDDDEDALKVDEAK---- 110
            YEA ++ R+KY +E   QQ      + +K +K++ EG V ++DDD  +   DE      
Sbjct: 165 EYEATEQMRKKYREEEIDQQTSTDMAVVKKLAKKDKEGKVEDDDDDFGSSDEDEDDEDKY 224

Query: 111 VDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMRED 170
            D + Q+   K++ + R        TVRNLRIREDTAKYL+NLD +SAYYDPKTRSMR+ 
Sbjct: 225 ADAADQVG-QKLDTKTRI-------TVRNLRIREDTAKYLINLDESSAYYDPKTRSMRDA 276

Query: 171 PLPDADPNEKFYGGDNQNRLSGQALEFKQL-----------NNYNVI------------- 206
           P+ + +P +  + GDN  R SG A   ++L           +N NV              
Sbjct: 277 PVRNMNPEDMKFAGDNFQRYSGDATNMQKLQLFAWQSAQKGSNINVSANPTAGELLHREF 336

Query: 207 ---KEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRS 263
              KE LK   K  I  KYG     + +P ELL GQ+E  VEY R+G+II+G E    RS
Sbjct: 337 QQKKEVLKDTNKTSILAKYGGEEHLQRMPNELLSGQTENYVEYSRSGQIIKGRERAKARS 396

Query: 264 KYEEDVYINNHTSVWGSWW--KDHQWGYKCCKQTIKNNLMKANVAR-------------- 307
           KY+EDVYINNHT++WGS++     QWG+ CC   +  +    +  +              
Sbjct: 397 KYDEDVYINNHTAIWGSYYDLSTSQWGFACCHSVLPGSYCTGDAGKLANAASSASALLAS 456

Query: 308 --------KAASEDMRAPAEE--KNLATWGT--------DVP---------DNLNLDQKQ 340
                   +AA ++  + AE+  K+LA+           D+P         + L+LD+ +
Sbjct: 457 SNERSKIEEAAEKERESLAEQHLKDLASGKAKKGKEREWDLPQYAKRREDGEELDLDKGR 516

Query: 341 LAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEMEAYRMKKIHHDDPMKDF 393
           L  AL++E +RKK  +DE  ++   +   +VT EE+EAYR+ +  +DDPM ++
Sbjct: 517 LKNALKEEKKRKKMGEDEAWQQ-TKKGKTDVTQEELEAYRLSRQAYDDPMSNY 568

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CR53|SLU7_CRYNB Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SLU7 PE=3 SV=1

 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 186/473 (39%), Positives = 263/473 (55%), Gaps = 89/473 (18%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH  K C+ERPRK GAK+TN  IAPDE ++ FE DYD KRDRWNG+DPA+Y  V+E
Sbjct: 105 CGAMTHKMKDCVERPRKRGAKFTNKDIAPDELVQQFEGDYDAKRDRWNGYDPASYKHVVE 164

Query: 61  RYEARDEARRKYLKE---QQLKK---LEEKNSKQNGEGGVSEEDDDEDALKVDEAK---- 110
            YEA ++ R+KY +E   QQ      + +K +K++ EG V ++DDD  +   DE      
Sbjct: 165 EYEATEQMRKKYREEEIDQQTSTDMAVVKKLAKKDKEGKVEDDDDDFGSSDEDEDDEDKY 224

Query: 111 VDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMRED 170
            D + Q+   K++ + R        TVRNLRIREDTAKYL+NLD +SAYYDPKTRSMR+ 
Sbjct: 225 ADAADQVG-QKLDTKTRI-------TVRNLRIREDTAKYLINLDESSAYYDPKTRSMRDA 276

Query: 171 PLPDADPNEKFYGGDNQNRLSGQALEFKQL-----------NNYNVI------------- 206
           P+ + +P +  + GDN  R SG A   ++L           +N NV              
Sbjct: 277 PVRNMNPEDMKFAGDNFQRYSGDATNMQKLQLFAWQSAQKGSNINVSANPTAGELLHREF 336

Query: 207 ---KEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRS 263
              KE LK   K  I  KYG     + +P ELL GQ+E  VEY R+G+II+G E    RS
Sbjct: 337 QQKKEVLKDTNKTSILAKYGGEEHLQRMPNELLSGQTENYVEYSRSGQIIKGRERAKARS 396

Query: 264 KYEEDVYINNHTSVWGSWW--KDHQWGYKCCKQTIKNNLMKANVAR-------------- 307
           KY+EDVYINNHT++WGS++     QWG+ CC   +  +    +  +              
Sbjct: 397 KYDEDVYINNHTAIWGSYYDLSTSQWGFACCHSVLPGSYCTGDAGKLANAASSASALLAS 456

Query: 308 --------KAASEDMRAPAEE--KNLATWGT--------DVP---------DNLNLDQKQ 340
                   +AA ++  + AE+  K+LA+           D+P         + L+LD+ +
Sbjct: 457 SNERSKIEEAAEKERESLAEQHLKDLASGKAKKGKEREWDLPQYAKRREDGEELDLDKGR 516

Query: 341 LAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEMEAYRMKKIHHDDPMKDF 393
           L  AL++E +RKK  +DE  ++   +   +VT EE+EAYR+ +  +DDPM ++
Sbjct: 517 LKNALKEEKKRKKMGEDEAWQQ-TKKGKTDVTQEELEAYRLSRQAYDDPMSNY 568

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q5ZIG2|SLU7_CHICK Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1

 Score =  268 bits (685), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 180/457 (39%), Positives = 240/457 (52%), Gaps = 78/457 (17%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIES-FELDYDGKRDRWNGFDPATYALVI 59
           CGA+TH  K CMERPRK+GAK+T M+IAPDE ++     DYDGKRDRWNG++P  +  ++
Sbjct: 121 CGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIV 180

Query: 60  ERYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDF 119
           E Y   D A+R  LK Q+L++       +  E   + ED+DED    D   +D   Q   
Sbjct: 181 EEYAKVDLAKRT-LKAQKLQEELASGKLEQVERDHNSEDEDEDKYADD---IDMPGQNFD 236

Query: 120 AKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDA--DP 177
           +K  +R+         TVRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P  +   +P
Sbjct: 237 SK--RRI---------TVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKNP 285

Query: 178 NEKFYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKL 210
           +E  Y GDN  R +G  +   Q                             ++ V KE  
Sbjct: 286 DEVGYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVKKEDF 345

Query: 211 KSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVY 270
           K++ K+ I EKYG     +  P ELLL Q+E  VEY R G +I+G E  +  SK EEDV 
Sbjct: 346 KAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIACSKNEEDVK 405

Query: 271 INNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDM----RAPAEEKNLA-- 324
           INNHT +WGS+WK+ +WGYKCC   +K +       ++ A+ +       P EE+++   
Sbjct: 406 INNHTCIWGSYWKEGKWGYKCCHSFVKFSYCTGEAGKEIANAEANLLEEQPREEEHMTKP 465

Query: 325 ---------------------TWGTDVPDNLNLDQKQLAEALRKEDERKKEEK-----DE 358
                                +  +D        Q++L +AL  E+ R  + K     DE
Sbjct: 466 KTLMEIHQEKQKEKKKKKHKKSSNSDSEGEEKKKQEKLKKALNAEEARLLQVKEIMQLDE 525

Query: 359 RKRKYN-VRWNDEVTAEEMEAYRMKKIHHDDPMKDFL 394
           RKR YN V    E T EEMEAYRMK+   DDPM  FL
Sbjct: 526 RKRPYNSVYETREPTEEEMEAYRMKRQRPDDPMASFL 562

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region.

Gallus gallus (taxid: 9031)

>sp|Q5U3F2|SLU7_DANRE Pre-mRNA-splicing factor SLU7 OS=Danio rerio GN=slu7 PE=2 SV=1

 Score =  266 bits (681), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 239/471 (50%), Gaps = 94/471 (19%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIE-SFELDYDGKRDRWNGFDPATYALVI 59
           CGA+TH  K C+ERPRK+GAK++   IAPDE  +    +DYDGKRDRWNG+DP  +  ++
Sbjct: 116 CGALTHKKKDCLERPRKVGAKFSGTGIAPDEHQQVQLSMDYDGKRDRWNGYDPDEHMRIV 175

Query: 60  ERYEARDEARRKYLKEQQL-------KKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVD 112
           E Y   D A+R  LK Q+L       K +++ NS+++ E       +DED     E K  
Sbjct: 176 EEYSKVDLAKRT-LKAQKLQEELASGKLMDQANSRKHEEAVQDHSSEDED-----EDKYV 229

Query: 113 ESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPL 172
           +   M     + + R T       VRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P 
Sbjct: 230 DDFDMPGQNFDSKRRIT-------VRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPY 282

Query: 173 PDA--DPNEKFYGGDNQNRLSGQALEFKQLN---------------------------NY 203
            +   +P E  Y GDN  R SG  +   Q                             +Y
Sbjct: 283 SNTGKNPEEVGYAGDNFVRYSGDTISMAQTQLFAWEAYEKGSEVHLQADPTKLELLHQSY 342

Query: 204 NVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRS 263
            V K+  K + K+ I EKYG +   +  PRELLL Q+E  VEY R G +++G E  + +S
Sbjct: 343 KVKKDDFKEKQKETILEKYGGSEHLDAPPRELLLAQTEEYVEYSRHGAVLKGQEKAVAQS 402

Query: 264 KYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRAPAEEKNL 323
           KYEEDV  NNHT +WGS+WKD  WGYKCC   +K +       +K  S     P EE   
Sbjct: 403 KYEEDVLNNNHTCIWGSYWKDGYWGYKCCHSMVKQSYCTGEAGKKVVSNSC-TPFEEDVE 461

Query: 324 ATWGTDVPDN-LNLDQKQLAEALRK------------------------------EDERK 352
               ++ P   L + Q++L +  +K                              E++R 
Sbjct: 462 EAQTSEEPKTLLQMHQEKLKDKKKKKKSKKHRDSDSSDEEDEAKKKEKLKKALSAEEQRL 521

Query: 353 KE-----EKDERKRKYN----VRWNDEVTAEEMEAYRMKKIHHDDPMKDFL 394
           K+     + DERKR YN    VR   E T EEMEA+RMK+   DDPM  FL
Sbjct: 522 KQVAELMQVDERKRPYNSLMEVR---EPTEEEMEAFRMKRCRPDDPMASFL 569

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region.

Danio rerio (taxid: 7955)

>sp|Q8BHJ9|SLU7_MOUSE Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 180/469 (38%), Positives = 238/469 (50%), Gaps = 83/469 (17%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIES-FELDYDGKRDRWNGFDPATYALVI 59
           CGAMTH  K C ERPR++GAK+T  +IAPDE ++     DYDGKRDRWNG++P  +  ++
Sbjct: 123 CGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query: 60  ERYEARDEARRKYLKEQQL-------KKLEEKNSKQNGEG---GVSEEDDDEDALKVDEA 109
           E Y   D A+R  LK Q+L       K +E+ NS ++  G     S+ + D ++   DE 
Sbjct: 183 EEYAKVDLAKRT-LKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDED 241

Query: 110 KVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMRE 169
           K  +   M     + + R T       VRNLRIRED AKYL NLD NSAYYDPKTR+MRE
Sbjct: 242 KYADDIDMPGQNFDSKRRIT-------VRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRE 294

Query: 170 DPLPDA--DPNEKFYGGDNQNRLSGQALEFKQLN-------------------------- 201
           +P  +A  +P+E  Y GDN  R +G  +   Q                            
Sbjct: 295 NPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLY 354

Query: 202 -NYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFL 260
            ++ V KE  K + K+ I EKYG     +  P ELLL Q+E  VEY R G +I+G E  +
Sbjct: 355 KSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAV 414

Query: 261 PRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKA----------- 309
             SKYEEDV INNHT +WGS+WK+ +WGYKCC    K +       +++           
Sbjct: 415 ACSKYEEDVKINNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKESVNSEECIITGA 474

Query: 310 -ASEDMRAPAEEKNLATW-----------------GTDVPDNLNLDQKQLAEALRKEDER 351
            A E ++ P     L                     +   D+    Q++L +AL  E+ R
Sbjct: 475 TAEESVKKPQALLELHQEKLKEEKKKKKKKKKHRKSSSDSDDEERKQEKLKKALNAEEAR 534

Query: 352 KKEEK-----DERKRKYNVRWND-EVTAEEMEAYRMKKIHHDDPMKDFL 394
               K     DERKR YN  +   E T EEMEAYRMK+   DDPM  FL
Sbjct: 535 LLHVKEIMQIDERKRPYNSIYETREPTEEEMEAYRMKRQRPDDPMASFL 583

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Mus musculus (taxid: 10090)

>sp|Q3ZBE5|SLU7_BOVIN Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2

 Score =  261 bits (668), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 179/470 (38%), Positives = 239/470 (50%), Gaps = 84/470 (17%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIES-FELDYDGKRDRWNGFDPATYALVI 59
           CGAMTH  K C ERPR++GAK+T  +IAPDE ++     DYDGKRDRWNG++P  +  ++
Sbjct: 123 CGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query: 60  ERYEARDEARRKYLKEQQL-------KKLEEKNSKQNGEG---GVSEEDDDEDALKVDEA 109
           E Y   D A+R  LK Q+L       K +E+ NS ++  G     S+ + D ++   DE 
Sbjct: 183 EEYAKVDLAKRT-LKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDED 241

Query: 110 KVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMRE 169
           K  +   M     + + R T       VRNLRIRED AKYL NLD NSAYYDPKTR+MRE
Sbjct: 242 KYADDIDMPGQNFDSKRRIT-------VRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRE 294

Query: 170 DPLPDA--DPNEKFYGGDNQNRLSGQALEFKQLN-------------------------- 201
           +P  +A  +P+E  Y GDN  R +G  +   Q                            
Sbjct: 295 NPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLY 354

Query: 202 -NYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFL 260
            ++ V KE  K + K+ I EKYG     +  P ELLL Q+E  VEY R G +I+G E  +
Sbjct: 355 KSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAV 414

Query: 261 PRSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAAS--------- 311
             SKYEEDV INNHT +WGS+WK+ +WGYKCC    K +       ++ A+         
Sbjct: 415 ACSKYEEDVKINNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIANSEECIINDA 474

Query: 312 ---EDMRAP------------------AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDE 350
              E ++ P                   ++K      +   D+     ++L +AL  E+ 
Sbjct: 475 TGEESVKKPQTLMEIHQEKLKEEKKKKKKKKRKHRKSSSESDDEEKKHEKLKKALNAEEA 534

Query: 351 RKKEEK-----DERKRKYNVRWND-EVTAEEMEAYRMKKIHHDDPMKDFL 394
           R    K     DERKR YN  +   E T EEMEAYRMK+   DDPM  FL
Sbjct: 535 RLLHVKEIMQIDERKRPYNSIYETREPTEEEMEAYRMKRQRPDDPMASFL 584

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
449482878	536	PREDICTED: pre-mRNA-splicing factor SLU7	0.997	0.735	0.775	0.0
449442853	536	PREDICTED: pre-mRNA-splicing factor SLU7	0.997	0.735	0.775	0.0
224121426	536	predicted protein [Populus trichocarpa]	1.0	0.736	0.746	0.0
224135337	536	predicted protein [Populus trichocarpa]	1.0	0.736	0.755	1e-180
449433249	768	PREDICTED: pre-mRNA-splicing factor SLU7	0.997	0.513	0.757	1e-179
356520911	540	PREDICTED: pre-mRNA-splicing factor SLU7	0.994	0.727	0.738	1e-175
356567955	540	PREDICTED: pre-mRNA-splicing factor SLU7	0.994	0.727	0.734	1e-174
255567264	536	step II splicing factor slu7, putative [	1.0	0.736	0.755	1e-174
115474617	536	Os08g0127700 [Oryza sativa Japonica Grou	1.0	0.736	0.716	1e-169
242078067	535	hypothetical protein SORBIDRAFT_07g00230	0.994	0.734	0.704	1e-167

>gi|449482878|ref|XP_004156430.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Cucumis sativus]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/437 (77%), Positives = 370/437 (84%), Gaps = 43/437 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH++KSCMERPRK+GAKWTNMHIAPDEKIE+FELDYDGKRDRWNG+DPATYA VIE
Sbjct: 99  CGAMTHDSKSCMERPRKVGAKWTNMHIAPDEKIETFELDYDGKRDRWNGYDPATYARVIE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
           RYEARDEARRK+LKEQQLKKLEEKN+KQN +  VS ED+DED LKVDEAKVDESKQMDFA
Sbjct: 159 RYEARDEARRKFLKEQQLKKLEEKNTKQNEDDEVSAEDEDEDDLKVDEAKVDESKQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPD DPNEK
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDVDPNEK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQ R+SGQAL+FKQLN                           NY VIKEKLKS 
Sbjct: 279 FYEGDNQYRISGQALDFKQLNVHAWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLKSH 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAA EE++PRELLLGQSERQVEYDRAGRI++G+E  LP+SKYEEDV+INN
Sbjct: 339 TKDAIMEKYGNAADEEQLPRELLLGQSERQVEYDRAGRIVKGLEMALPKSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HTSVWGSWWKDHQWGYKCCKQTI+N                +LMK+N+ARKA SED  AP
Sbjct: 399 HTSVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEASADLMKSNIARKATSEDTPAP 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWG++VPD+L LDQK+L E+L+KEDER+KEEKDERKRKYNVRWNDEVTAE+ME
Sbjct: 459 TEEKKLATWGSEVPDDLVLDQKKLTESLKKEDERRKEEKDERKRKYNVRWNDEVTAEDME 518

Query: 378 AYRMKKIHHDDPMKDFL 394
           AYRMKK+HHDDPMKDFL
Sbjct: 519 AYRMKKVHHDDPMKDFL 535

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442853|ref|XP_004139195.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Cucumis sativus]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/437 (77%), Positives = 370/437 (84%), Gaps = 43/437 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+AK+CMERPRK+GAKWTNMHIAPDEKIE+FELDYDGKRDRWNG+DPATYA VIE
Sbjct: 99  CGAMTHDAKACMERPRKVGAKWTNMHIAPDEKIETFELDYDGKRDRWNGYDPATYARVIE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
           RYEARDEARRK+LKEQQLKKLEEKN+KQN +  VS ED+DED LKVDEAKVDESKQMDFA
Sbjct: 159 RYEARDEARRKFLKEQQLKKLEEKNTKQNEDDEVSAEDEDEDDLKVDEAKVDESKQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPD DPNEK
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDVDPNEK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQ R+SGQAL+FKQLN                           NY VIKEKLKS 
Sbjct: 279 FYEGDNQYRISGQALDFKQLNVHAWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLKSH 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAA EE++PRELLLGQSERQVEYDRAGRI++G+E  LP+SKYEEDV+INN
Sbjct: 339 TKDAIMEKYGNAADEEQLPRELLLGQSERQVEYDRAGRIVKGLEMALPKSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HTSVWGSWWKDHQWGYKCCKQTI+N                +LMK+N+ARKA SED  AP
Sbjct: 399 HTSVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEASADLMKSNIARKATSEDTPAP 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWG++VPD+L LDQK+L E+L+KEDER+KEEKDERKRKYNVRWNDEVTAE+ME
Sbjct: 459 TEEKKLATWGSEVPDDLVLDQKKLTESLKKEDERRKEEKDERKRKYNVRWNDEVTAEDME 518

Query: 378 AYRMKKIHHDDPMKDFL 394
           AYRMKK+HHDDPMKDFL
Sbjct: 519 AYRMKKVHHDDPMKDFL 535

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121426|ref|XP_002318579.1| predicted protein [Populus trichocarpa] gi|222859252|gb|EEE96799.1| predicted protein [Populus trichocarpa]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/438 (74%), Positives = 365/438 (83%), Gaps = 43/438 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+AKSC+ERPRK+GAKWTN HIAPDEKIE+ ELDYDGKRDRWNG+DP++YA V+E
Sbjct: 99  CGAMTHDAKSCVERPRKVGAKWTNTHIAPDEKIETIELDYDGKRDRWNGYDPSSYAHVVE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
           RYEARD ARRK++KEQQLKKLEEKN  QN E GVS+ D+DED L+VDEAKVDESKQMDFA
Sbjct: 159 RYEARDAARRKHMKEQQLKKLEEKNGNQNVEDGVSDVDNDEDDLRVDEAKVDESKQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDV+SA+YDPKTRSMREDPLPDADPNEK
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVDSAHYDPKTRSMREDPLPDADPNEK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FYGGDN+ R SGQALEFK LN                           N+ VIK+KLK+R
Sbjct: 279 FYGGDNRYRNSGQALEFKHLNIHAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKDKLKTR 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASEEEIPRELLLGQSERQVEYDRAGRII+G E+ LPRSKYEEDV+INN
Sbjct: 339 TKDTIMEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIKGQETVLPRSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQ I+N                +LMK N+ RK A+E+  AP
Sbjct: 399 HTTVWGSWWKDHQWGYKCCKQMIRNSYCTGAAGIKAAEAATDLMKTNIDRKEATEEAPAP 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EE+ LATWGT+VP++L LD+K LAEALRKED+RK+EEKDERKRKYNVRWNDEVT E+ME
Sbjct: 459 VEERRLATWGTEVPEDLVLDEKLLAEALRKEDQRKREEKDERKRKYNVRWNDEVTTEDME 518

Query: 378 AYRMKKIHHDDPMKDFLY 395
           AYRMKK+HHDDPMKDFL+
Sbjct: 519 AYRMKKVHHDDPMKDFLH 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135337|ref|XP_002322045.1| predicted protein [Populus trichocarpa] gi|222869041|gb|EEF06172.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 331/438 (75%), Positives = 366/438 (83%), Gaps = 43/438 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH AKSC+ERPRK+GAKWTN+HIAPDEKIE+ ELDYDGKRDRWNG+DP++Y+ V+E
Sbjct: 99  CGAMTHAAKSCVERPRKVGAKWTNIHIAPDEKIETIELDYDGKRDRWNGYDPSSYSHVVE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
           RYEARD ARRKY+KEQQLKKLEEKN  QN E GV++ D+DED L+VDEAKVDESKQMDFA
Sbjct: 159 RYEARDAARRKYVKEQQLKKLEEKNGNQNAEDGVNDVDNDEDDLRVDEAKVDESKQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPNEK
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQ R SGQALEFK LN                           N+ VIKEKLK+R
Sbjct: 279 FYEGDNQYRNSGQALEFKHLNIHAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKEKLKTR 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASEEEIPRELLLGQSERQVEYDRAGRII+G E+ LPRSKYEEDV+INN
Sbjct: 339 TKDTIMEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIKGQETVLPRSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQ I+N                +LMKAN+ RK A+++  AP
Sbjct: 399 HTTVWGSWWKDHQWGYKCCKQMIRNSYCTGAAGIKAAEAATDLMKANIDRKEATKEAPAP 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWGT+VP++L LD+K LAEALRKEDERK+EEKDERKRKYNVRWNDEVTAE+ME
Sbjct: 459 VEEKQLATWGTEVPEDLILDEKLLAEALRKEDERKREEKDERKRKYNVRWNDEVTAEDME 518

Query: 378 AYRMKKIHHDDPMKDFLY 395
           AYRMKK+HHDDPMKDFL+
Sbjct: 519 AYRMKKVHHDDPMKDFLH 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433249|ref|XP_004134410.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Cucumis sativus]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 334/441 (75%), Positives = 369/441 (83%), Gaps = 47/441 (10%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+AK+CMERPRK+GAKWTNMHIAPDEKIE+FELDYDGKRD WNG+DPATYA VIE
Sbjct: 327 CGAMTHDAKACMERPRKVGAKWTNMHIAPDEKIETFELDYDGKRDHWNGYDPATYARVIE 386

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDE----AKVDESKQ 116
           RYEARDEARRK+LKEQQLKKLEEKN+KQ  +  VS+ED+DED  + D     AKVDESKQ
Sbjct: 387 RYEARDEARRKFLKEQQLKKLEEKNNKQTEDDEVSDEDEDEDEDEDDLKVDEAKVDESKQ 446

Query: 117 MDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDAD 176
           MDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDAD
Sbjct: 447 MDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDAD 506

Query: 177 PNEKFYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEK 209
           PNEKFYGGDNQNR+SGQAL+FKQLN                           NY VIKEK
Sbjct: 507 PNEKFYGGDNQNRISGQALDFKQLNVHAWEAFDKGQDIHLQAAPSQAELLYKNYTVIKEK 566

Query: 210 LKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDV 269
           LKS  KD I EKYGNAA+EE++PRELLLGQSERQVEYDRAGRI++G+E  LP+SKYEEDV
Sbjct: 567 LKSHTKDAIMEKYGNAAAEEKLPRELLLGQSERQVEYDRAGRIVKGLELALPKSKYEEDV 626

Query: 270 YINNHTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASED 313
           +INNHTSVWGSWWKDHQWGYKCCKQTI+N                +LMK+N+ARKA SED
Sbjct: 627 FINNHTSVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEAAADLMKSNIARKATSED 686

Query: 314 MRAPAEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTA 373
             A  EEK LATWG++VPD++ LDQK+L EAL+KEDER+KEEKDERKRKYNVRWNDEVTA
Sbjct: 687 TPASTEEKKLATWGSEVPDDIVLDQKKLTEALKKEDERRKEEKDERKRKYNVRWNDEVTA 746

Query: 374 EEMEAYRMKKIHHDDPMKDFL 394
           E+MEAYRMK++HHDDPMKDFL
Sbjct: 747 EDMEAYRMKRVHHDDPMKDFL 767

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520911|ref|XP_003529103.1| PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Glycine max]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 328/444 (73%), Positives = 366/444 (82%), Gaps = 51/444 (11%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH++KSCMERPR++GAKWTN HIAPDEKIE+FELDYDGKRDRWNG+D +TYA VIE
Sbjct: 99  CGAMTHDSKSCMERPRRVGAKWTNKHIAPDEKIETFELDYDGKRDRWNGYDASTYARVIE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSE------EDDDEDALKVDEAKVDES 114
           RYEARDEAR+KYLKEQQLKKLE+ N  QNGE   S+      ED+DED L+VDEAKVDES
Sbjct: 159 RYEARDEARKKYLKEQQLKKLEKSN--QNGEDAASDGDEEEEEDEDEDDLRVDEAKVDES 216

Query: 115 KQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPD 174
           KQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPD
Sbjct: 217 KQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPD 276

Query: 175 ADPNEKFYGGDNQNRLSGQALEFKQLN---------------------------NYNVIK 207
           ADPNEKFY GDNQ R SGQALEFK+LN                           N+ V+K
Sbjct: 277 ADPNEKFYLGDNQYRNSGQALEFKELNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKVMK 336

Query: 208 EKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEE 267
           EKLK + K+ I EKYGNAA E+++PRELLLGQSERQVEYDRAGRII+G E+ LPRSKYEE
Sbjct: 337 EKLKYQTKETIIEKYGNAADEDKLPRELLLGQSERQVEYDRAGRIIKGQEAALPRSKYEE 396

Query: 268 DVYINNHTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAAS 311
           DVYINNHT+VWGSWWKDHQWGYKCCKQTI+N                +LMKAN+ARK A+
Sbjct: 397 DVYINNHTTVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEAASDLMKANIARKEAA 456

Query: 312 EDMRAPAEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEV 371
            D  AP EEK LATWGTDVPD+L LD+K LAE+L+KE++RK+EEKDERKRKYNVRWNDEV
Sbjct: 457 TDDPAPVEEKKLATWGTDVPDDLVLDEKLLAESLKKEEQRKREEKDERKRKYNVRWNDEV 516

Query: 372 TAEEMEAYRMKKIHHDDPMKDFLY 395
           TAE+MEAYRMKK+HHDDPMKDFL+
Sbjct: 517 TAEDMEAYRMKKVHHDDPMKDFLH 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567955|ref|XP_003552180.1| PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Glycine max]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 326/444 (73%), Positives = 364/444 (81%), Gaps = 51/444 (11%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH++KSCMERPR++GAKWTN HIAPDEKIE+FELDYDGKRDRWNG+D +TYA VIE
Sbjct: 99  CGAMTHDSKSCMERPRRVGAKWTNKHIAPDEKIETFELDYDGKRDRWNGYDASTYARVIE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDA------LKVDEAKVDES 114
           RYEARDEAR+KYLKEQQLKKLE+ N  QNGE   S+E+++ED       L+VDEAKVDES
Sbjct: 159 RYEARDEARKKYLKEQQLKKLEKSN--QNGEDAASDEEEEEDEDEDEDDLRVDEAKVDES 216

Query: 115 KQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPD 174
           KQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPD
Sbjct: 217 KQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPD 276

Query: 175 ADPNEKFYGGDNQNRLSGQALEFKQLN---------------------------NYNVIK 207
           ADPNEKFY GDNQ R SGQALEFK+LN                           N+ V+K
Sbjct: 277 ADPNEKFYLGDNQYRNSGQALEFKELNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKVMK 336

Query: 208 EKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEE 267
           EKLK + K+ I EKYGNAA E+++PRELLLGQSERQVEYDRAGRII+G E  LPRSKYEE
Sbjct: 337 EKLKYQTKETIIEKYGNAADEDKLPRELLLGQSERQVEYDRAGRIIKGQEVALPRSKYEE 396

Query: 268 DVYINNHTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAAS 311
           DVYINNHT+VWGSWWKDHQWGYKCCKQTI+N                +LMKAN+ARK A+
Sbjct: 397 DVYINNHTTVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEAASDLMKANIARKEAA 456

Query: 312 EDMRAPAEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEV 371
            +   P EEK LATWGTDVPD+L LD+K LAEAL+KED+RK+EEKDERKRKYNVRWNDEV
Sbjct: 457 TEDPTPVEEKKLATWGTDVPDDLVLDEKLLAEALKKEDQRKREEKDERKRKYNVRWNDEV 516

Query: 372 TAEEMEAYRMKKIHHDDPMKDFLY 395
           TAE+MEAYRMKK+HHDDPMKDFL+
Sbjct: 517 TAEDMEAYRMKKVHHDDPMKDFLH 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567264|ref|XP_002524613.1| step II splicing factor slu7, putative [Ricinus communis] gi|223536166|gb|EEF37821.1| step II splicing factor slu7, putative [Ricinus communis]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 331/438 (75%), Positives = 361/438 (82%), Gaps = 43/438 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+AKSCMERPR++GAKWTN HIAPDE IESFELDYDGKRDRWNG+D + YA V+E
Sbjct: 99  CGAMTHDAKSCMERPRRVGAKWTNKHIAPDENIESFELDYDGKRDRWNGYDTSNYAHVVE 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
           RYEA+  ARRKYLKEQQLKKLEEKNS QN E G S+ED+DED L+VDEAKVDESKQMDFA
Sbjct: 159 RYEAQGAARRKYLKEQQLKKLEEKNSSQNAEEGASDEDNDEDDLRVDEAKVDESKQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPNEK
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FYGGDNQ R SGQALEFKQLN                           NY VIKEKLK+R
Sbjct: 279 FYGGDNQYRNSGQALEFKQLNIHSWEAFDKGQDIHMQAAPSQAELLYKNYKVIKEKLKTR 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASEEEIPRELLLGQSERQVEYDRAGRII+G E  LP+SKYEEDVYINN
Sbjct: 339 TKDTIMEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIKGQEIVLPKSKYEEDVYINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQT++N                +LM+AN+ARK   EDM  P
Sbjct: 399 HTTVWGSWWKDHQWGYKCCKQTVRNSYCTGAAGIKAAEAATDLMRANIARKEVKEDMPEP 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK +ATWGT+VPD+L LD+K LAEAL+KE ERKKEE+DERKRKYNV WNDEVT E+ME
Sbjct: 459 VEEKRVATWGTEVPDDLVLDEKLLAEALKKEKERKKEERDERKRKYNVTWNDEVTPEDME 518

Query: 378 AYRMKKIHHDDPMKDFLY 395
           AYRM K+HHDDPMK+FL+
Sbjct: 519 AYRMTKVHHDDPMKNFLH 536

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115474617|ref|NP_001060905.1| Os08g0127700 [Oryza sativa Japonica Group] gi|75136283|sp|Q6ZK48.1|SLU7_ORYSJ RecName: Full=Pre-mRNA-splicing factor SLU7 gi|150417959|sp|A2YQU8.2|SLU7_ORYSI RecName: Full=Pre-mRNA-splicing factor SLU7 gi|42407714|dbj|BAD08862.1| putative step II splicing factor SLU7 [Oryza sativa Japonica Group] gi|113622874|dbj|BAF22819.1| Os08g0127700 [Oryza sativa Japonica Group] gi|215708746|dbj|BAG94015.1| unnamed protein product [Oryza sativa Japonica Group] gi|215765271|dbj|BAG86968.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768211|dbj|BAH00440.1| unnamed protein product [Oryza sativa Japonica Group] gi|218200420|gb|EEC82847.1| hypothetical protein OsI_27673 [Oryza sativa Indica Group] gi|222639849|gb|EEE67981.1| hypothetical protein OsJ_25904 [Oryza sativa Japonica Group]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 314/438 (71%), Positives = 356/438 (81%), Gaps = 43/438 (9%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+ KSCMERPR +GAKWTN++IAPDEK+ESFELDYDGKRDRWNG+DP+TY  VI 
Sbjct: 99  CGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIA 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
            YEAR+EAR+KYLKEQQLKKLEEK+ ++  E   SEE+D+ED LK+DEAKVDES QMDFA
Sbjct: 159 DYEAREEARKKYLKEQQLKKLEEKDGEEGDENVASEEEDEEDGLKIDEAKVDESAQMDFA 218

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN+K
Sbjct: 219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDK 278

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQNRLSGQALEFKQLN                           ++ + KEKLKS 
Sbjct: 279 FYVGDNQNRLSGQALEFKQLNIHAWEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKSE 338

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASEE IPRELLLGQSE+++EYDR GRII+G +  LP+SKYEEDV+INN
Sbjct: 339 NKDKIMEKYGNAASEEPIPRELLLGQSEKEIEYDRTGRIIKGQDVALPKSKYEEDVFINN 398

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQTI+N                +LMKAN+ARK A+ED    
Sbjct: 399 HTTVWGSWWKDHQWGYKCCKQTIRNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVR 458

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWGTDVP+++ LD+K L EAL+KE  R+KEE DERKRKYNV+WNDEVTAE+ME
Sbjct: 459 HEEKRLATWGTDVPNDIVLDKKLLDEALKKEGARRKEEMDERKRKYNVKWNDEVTAEDME 518

Query: 378 AYRMKKIHHDDPMKDFLY 395
           AYRMK+IHHDDPM+DFL+
Sbjct: 519 AYRMKRIHHDDPMRDFLH 536

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242078067|ref|XP_002443802.1| hypothetical protein SORBIDRAFT_07g002300 [Sorghum bicolor] gi|241940152|gb|EES13297.1| hypothetical protein SORBIDRAFT_07g002300 [Sorghum bicolor]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 308/437 (70%), Positives = 351/437 (80%), Gaps = 44/437 (10%)

Query: 1   CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
           CGAMTH+ KSCMERPR +GAKWTN++IAPDEK+ESFELDYDGKRDRWNG+DP+TY  VI 
Sbjct: 99  CGAMTHDKKSCMERPRNVGAKWTNVNIAPDEKVESFELDYDGKRDRWNGYDPSTYTRVIA 158

Query: 61  RYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFA 120
            YEAR+EAR+KYLKEQQLKKLEEK+++++ E  V  EDD+ED L++DEAKVDES QMDFA
Sbjct: 159 DYEAREEARKKYLKEQQLKKLEEKDTEKDDEN-VGSEDDEEDGLRIDEAKVDESAQMDFA 217

Query: 121 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
           KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPN+K
Sbjct: 218 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNDK 277

Query: 181 FYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKSR 213
           FY GDNQNRLSGQALEFKQLN                           ++ V KE LKS 
Sbjct: 278 FYVGDNQNRLSGQALEFKQLNIHAWEAFEKGQDIHMQAAPSQAELLYKSFKVKKEMLKSE 337

Query: 214 LKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINN 273
            KD I EKYGNAASE+ IPRELLLGQSER++EYDR GRII+G +  LP+SKYEEDV+INN
Sbjct: 338 HKDKIMEKYGNAASEDTIPRELLLGQSEREIEYDRTGRIIKGQDVSLPKSKYEEDVFINN 397

Query: 274 HTSVWGSWWKDHQWGYKCCKQTIKN----------------NLMKANVARKAASEDMRAP 317
           HT+VWGSWWKDHQWGYKCCKQTIKN                +LMKAN+ARK A+ED    
Sbjct: 398 HTTVWGSWWKDHQWGYKCCKQTIKNSYCTGLAGIEAAEASADLMKANMARKEAAEDEPVQ 457

Query: 318 AEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRWNDEVTAEEME 377
            EEK LATWGTDVP +L LD K+LAE+L+KE  R+ EE+DE+KRKYNV ++D+VT E+ME
Sbjct: 458 HEEKRLATWGTDVPQDLVLDPKKLAESLKKEKGRRNEERDEKKRKYNVHFDDQVTVEDME 517

Query: 378 AYRMKKIHHDDPMKDFL 394
           AYRM KIHHDDPM+ FL
Sbjct: 518 AYRMTKIHHDDPMRAFL 534

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
TAIR|locus:2018496	535	SMP1 "SWELLMAP 1" [Arabidopsis	0.508	0.375	0.681	3.6e-135
TAIR|locus:2115115	536	SMP2 "SWELLMAP 2" [Arabidopsis	0.508	0.375	0.671	3.2e-134
UNIPROTKB|F1NNB9	564	SLU7 "Pre-mRNA-splicing factor	0.308	0.216	0.412	2.1e-69
UNIPROTKB|Q5ZIG2	564	SLU7 "Pre-mRNA-splicing factor	0.308	0.216	0.412	3.9e-69
TAIR|locus:2077157	385	AT3G45950 [Arabidopsis thalian	0.491	0.503	0.598	1.1e-68
UNIPROTKB|F1NRP0	582	SLU7 "Pre-mRNA-splicing factor	0.503	0.341	0.408	1.3e-68
UNIPROTKB|F1RR54	586	SLU7 "Uncharacterized protein"	0.503	0.339	0.406	3.7e-68
RGD|631432	586	Slu7 "SLU7 splicing factor hom	0.503	0.339	0.406	8.2e-68
MGI|MGI:2385598	585	Slu7 "SLU7 splicing factor hom	0.503	0.340	0.401	1e-67
UNIPROTKB|Q3ZBE5	586	SLU7 "Pre-mRNA-splicing factor	0.503	0.339	0.401	1.6e-67

TAIR|locus:2018496 SMP1 "SWELLMAP 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.6e-135, Sum P(2) = 3.6e-135
 Identities = 137/201 (68%), Positives = 152/201 (75%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
             CGAMTH AK+CM+RPRKIGAK+TNM+IAPDEKIESFELDYDGKRDRWNG+DP+TY  VI+
Sbjct:    99 CGAMTHTAKACMDRPRKIGAKYTNMNIAPDEKIESFELDYDGKRDRWNGYDPSTYHRVID 158

Query:    61 RYEARDEARRXXXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXALKVDEAKVDESKQMDFA 120
              YEA+++AR+                                 L+VDEAKVDES+QMDFA
Sbjct:   159 LYEAKEDARKKYLKEQQLKKLEEKNNNEKGDDANSDGEEDEDDLRVDEAKVDESRQMDFA 218

Query:   121 KVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
             KVEKRVR         VRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPN+K
Sbjct:   219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNDK 278

Query:   181 FYGGDNQNRLSGQALEFKQLN 201
             FY GDNQ R SGQALEFKQLN
Sbjct:   279 FYLGDNQYRNSGQALEFKQLN 299

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=RCA;IMP

GO:0008380 "RNA splicing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

TAIR|locus:2115115 SMP2 "SWELLMAP 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 3.2e-134, Sum P(2) = 3.2e-134
 Identities = 135/201 (67%), Positives = 153/201 (76%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
             CGAMTH++K+CM+RPRKIGAK+TNM+IA DEKIESFELDYDGKRDRWNG+D +TY  V++
Sbjct:    99 CGAMTHSSKACMDRPRKIGAKYTNMNIAADEKIESFELDYDGKRDRWNGYDTSTYRHVVD 158

Query:    61 RYEARDEARRXXXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXALKVDEAKVDESKQMDFA 120
             RY+A++EAR+                  N              L+VDEAKVDES+QMDFA
Sbjct:   159 RYDAKEEARKKYLKEQQLKKLEEKNNNENGDDATSDGEEDLDDLRVDEAKVDESRQMDFA 218

Query:   121 KVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
             KVEKRVR         VRNLRIREDTAKYLLNLDVNSA+YDPKTRSMREDPLPDADPNEK
Sbjct:   219 KVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPDADPNEK 278

Query:   181 FYGGDNQNRLSGQALEFKQLN 201
             FY GDNQ R SGQALEFKQ+N
Sbjct:   279 FYLGDNQYRNSGQALEFKQIN 299

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=TAS

GO:0008284 "positive regulation of cell proliferation" evidence=IGI;RCA

GO:0008380 "RNA splicing" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051276 "chromosome organization" evidence=RCA

UNIPROTKB|F1NNB9 SLU7 "Pre-mRNA-splicing factor SLU7" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 2.1e-69, Sum P(4) = 2.1e-69
 Identities = 52/126 (41%), Positives = 76/126 (60%)

Query:   202 NYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLP 261
             ++ V KE  K++ K+ I EKYG     +  P ELLL Q+E  VEY R G +I+G E  + 
Sbjct:   337 SFKVKKEDFKAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIA 396

Query:   262 RSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRA----P 317
              SKYEEDV INNHT +WGS+WK+ +WGY+CC   +K +       ++ A+ +       P
Sbjct:   397 CSKYEEDVKINNHTCIWGSYWKEGKWGYRCCHSFVKFSYCTGEAGKEIANAEANLLEEQP 456

Query:   318 AEEKNL 323
              EE+++
Sbjct:   457 REEEHM 462

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZIG2 SLU7 "Pre-mRNA-splicing factor SLU7" [Gallus gallus (taxid:9031)]

 Score = 264 (98.0 bits), Expect = 3.9e-69, Sum P(4) = 3.9e-69
 Identities = 52/126 (41%), Positives = 75/126 (59%)

Query:   202 NYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLP 261
             ++ V KE  K++ K+ I EKYG     +  P ELLL Q+E  VEY R G +I+G E  + 
Sbjct:   337 SFKVKKEDFKAQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQEKAIA 396

Query:   262 RSKYEEDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVARKAASEDMRA----P 317
              SK EEDV INNHT +WGS+WK+ +WGYKCC   +K +       ++ A+ +       P
Sbjct:   397 CSKNEEDVKINNHTCIWGSYWKEGKWGYKCCHSFVKFSYCTGEAGKEIANAEANLLEEQP 456

Query:   318 AEEKNL 323
              EE+++
Sbjct:   457 REEEHM 462

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

TAIR|locus:2077157 AT3G45950 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 122/204 (59%), Positives = 142/204 (69%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIESFELDYDGKRDRWNGFDPATYALVIE 60
             CGAMTH+ K+CMERPRK+GAK+T+ +IAPDEKIES E DYDGKRDRWNG+DP++Y  V +
Sbjct:    99 CGAMTHDVKTCMERPRKVGAKYTDKNIAPDEKIESLEFDYDGKRDRWNGYDPSSYCHVRD 158

Query:    61 RYEARDEARRXXXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXALKVDEAKVDESKQMDFA 120
             R+EA++ AR                                  L+VDEAK+DES Q+DFA
Sbjct:   159 RHEAKENAREKYLNEQQLIAKLEEKNIDGEEED----------LRVDEAKIDESMQVDFA 208

Query:   121 KVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEK 180
             KV+KRVR         VRNLRIRED AKYLLNLDVNSAYYDPK+RSMREDPLP  DPNEK
Sbjct:   209 KVKKRVRTTDGGSKGTVRNLRIREDPAKYLLNLDVNSAYYDPKSRSMREDPLPYTDPNEK 268

Query:   181 FYGGDNQNRLSGQALEFKQLNNYN 204
             F   DNQ R SGQA+EFKQ N Y+
Sbjct:   269 FCLRDNQYRNSGQAIEFKQQNMYS 292

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NRP0 SLU7 "Pre-mRNA-splicing factor SLU7" [Gallus gallus (taxid:9031)]

 Score = 384 (140.2 bits), Expect = 1.3e-68, Sum P(3) = 1.3e-68
 Identities = 83/203 (40%), Positives = 107/203 (52%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIE-SFELDYDGKRDRWNGFDPATYALVI 59
             CGA+TH  K CMERPRK+GAK+T M+IAPDE ++     DYDGKRDRWNG++P  +  ++
Sbjct:   123 CGALTHKKKDCMERPRKVGAKYTGMNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query:    60 ERYEARDEARRXXXXXXXXXXXXXXXXXX-NXXXXXXXXXXXXXALKVDEAKVDESKQMD 118
             E Y   D A+R                   N               + D    DE +   
Sbjct:   183 EEYAKVDLAKRTLKAQKLQEELASGKLEQVNSPRHQWGEEEPNSQTERDHNSEDEDEDKY 242

Query:   119 FAKVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDA--D 176
                ++   +         VRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P  +   +
Sbjct:   243 ADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANTGKN 302

Query:   177 PNEKFYGGDNQNRLSGQALEFKQ 199
             P+E  Y GDN  R +G  +   Q
Sbjct:   303 PDEVGYAGDNFVRYTGDTISMAQ 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IEA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|F1RR54 SLU7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 378 (138.1 bits), Expect = 3.7e-68, Sum P(3) = 3.7e-68
 Identities = 83/204 (40%), Positives = 106/204 (51%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIE-SFELDYDGKRDRWNGFDPATYALVI 59
             CGAMTH  K C ERPR++GAK+T  +IAPDE I+     DYDGKRDRWNG++P  +  ++
Sbjct:   123 CGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query:    60 ERYEARDEARRXXXXXXXXXXXXXXXXX--XNXXXXXXXXXXXXXALKVDEAKVDESKQM 117
             E Y   D A+R                    N               + D    DE +  
Sbjct:   183 EEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDEDK 242

Query:   118 DFAKVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDA-- 175
                 ++   +         VRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P  +A  
Sbjct:   243 YADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGK 302

Query:   176 DPNEKFYGGDNQNRLSGQALEFKQ 199
             +P+E  Y GDN  R +G  +   Q
Sbjct:   303 NPDEVSYAGDNFVRYTGDTISMAQ 326

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|631432 Slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 381 (139.2 bits), Expect = 8.2e-68, Sum P(3) = 8.2e-68
 Identities = 83/204 (40%), Positives = 107/204 (52%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIE-SFELDYDGKRDRWNGFDPATYALVI 59
             CGAMTH  K C ERPR++GAK+T  +IAPDE I+     DYDGKRDRWNG++P  +  ++
Sbjct:   123 CGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query:    60 ERYEARDEARRXXXXXXXXXXXXXXXXX--XNXXXXXXXXXXXXXALKVDEAKVDESKQM 117
             E Y   D A+R                    N              ++ D    DE +  
Sbjct:   183 EEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDEDK 242

Query:   118 DFAKVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDA-- 175
                 ++   +         VRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P  +A  
Sbjct:   243 YADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGK 302

Query:   176 DPNEKFYGGDNQNRLSGQALEFKQ 199
             +P+E  Y GDN  R +G  +   Q
Sbjct:   303 NPDEVSYAGDNFVRYTGDTISMAQ 326

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISS

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=ISS

GO:0000386 "second spliceosomal transesterification activity" evidence=ISS

GO:0000389 "mRNA 3'-splice site recognition" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016607 "nuclear speck" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=ISS

GO:0033554 "cellular response to stress" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:2385598 Slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 380 (138.8 bits), Expect = 1.0e-67, Sum P(3) = 1.0e-67
 Identities = 82/204 (40%), Positives = 107/204 (52%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIE-SFELDYDGKRDRWNGFDPATYALVI 59
             CGAMTH  K C ERPR++GAK+T  +IAPDE ++     DYDGKRDRWNG++P  +  ++
Sbjct:   123 CGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query:    60 ERYEARDEARRXXXXXXXXXXXXXXXXX--XNXXXXXXXXXXXXXALKVDEAKVDESKQM 117
             E Y   D A+R                    N              ++ D    DE +  
Sbjct:   183 EEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDEDK 242

Query:   118 DFAKVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDA-- 175
                 ++   +         VRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P  +A  
Sbjct:   243 YADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGK 302

Query:   176 DPNEKFYGGDNQNRLSGQALEFKQ 199
             +P+E  Y GDN  R +G  +   Q
Sbjct:   303 NPDEVSYAGDNFVRYTGDTISMAQ 326

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISO

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=ISO

GO:0000386 "second spliceosomal transesterification activity" evidence=ISO

GO:0000389 "mRNA 3'-splice site recognition" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISO

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=ISO

GO:0033554 "cellular response to stress" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|Q3ZBE5 SLU7 "Pre-mRNA-splicing factor SLU7" [Bos taurus (taxid:9913)]

 Score = 377 (137.8 bits), Expect = 1.6e-67, Sum P(3) = 1.6e-67
 Identities = 82/204 (40%), Positives = 106/204 (51%)

Query:     1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIE-SFELDYDGKRDRWNGFDPATYALVI 59
             CGAMTH  K C ERPR++GAK+T  +IAPDE ++     DYDGKRDRWNG++P  +  ++
Sbjct:   123 CGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMKIV 182

Query:    60 ERYEARDEARRXXXXXXXXXXXXXXXXX--XNXXXXXXXXXXXXXALKVDEAKVDESKQM 117
             E Y   D A+R                    N               + D    DE +  
Sbjct:   183 EEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDEDK 242

Query:   118 DFAKVEKRVRXXXXXXXXXVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDA-- 175
                 ++   +         VRNLRIRED AKYL NLD NSAYYDPKTR+MRE+P  +A  
Sbjct:   243 YADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANAGK 302

Query:   176 DPNEKFYGGDNQNRLSGQALEFKQ 199
             +P+E  Y GDN  R +G  +   Q
Sbjct:   303 NPDEVSYAGDNFVRYTGDTISMAQ 326

GO:0005737 "cytoplasm" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0030628 "pre-mRNA 3'-splice site binding" evidence=IEA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0000389 "mRNA 3'-splice site recognition" evidence=IEA

GO:0000386 "second spliceosomal transesterification activity" evidence=IEA

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZK48	SLU7_ORYSJ	No assigned EC number	0.7168	1.0	0.7369	yes	no
Q9SHY8	SLU7A_ARATH	No assigned EC number	0.6887	0.9974	0.7364	yes	no
A2YQU8	SLU7_ORYSI	No assigned EC number	0.7168	1.0	0.7369	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	395
pfam11708	236	pfam11708, Slu7, Pre-mRNA splicing Prp18-interacti	4e-66

>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor

 Score =  209 bits (534), Expect = 4e-66
 Identities = 116/271 (42%), Positives = 148/271 (54%), Gaps = 62/271 (22%)

Query: 37  ELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSE 96
           ELDYD KRDRWNG+DP+ Y  V+E YE  +E R+K   ++                    
Sbjct: 1   ELDYDAKRDRWNGYDPSEYKEVVEEYEKLEELRKKLKAKK-------------------- 40

Query: 97  EDDDEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVN 156
                +    D    DE +++   + +  +  +   +  TVRNLRIREDTAKYLLNLD N
Sbjct: 41  -----EDDSDDTDYEDEDEELYLDESD--MGDSDSKTRTTVRNLRIREDTAKYLLNLDSN 93

Query: 157 SAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLN--------------- 201
           SAYYDPK+RSMR+DPL  ADP +  + GDN  RLSG+ALEF++L                
Sbjct: 94  SAYYDPKSRSMRDDPL--ADPEDVLFAGDNFVRLSGEALEFEELQKFAWEAAEKGGDVHL 151

Query: 202 ------------NYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRA 249
                            KE+LK + K  + EKYG     ++ P+ELLLGQSE  VEYDRA
Sbjct: 152 QANPTKLELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRA 211

Query: 250 GRIIQGVESFLPRSKYEEDVYINNHTSVWGS 280
           G      +    +SKYEEDV+INNHTSVWGS
Sbjct: 212 G------KKKKAKSKYEEDVFINNHTSVWGS 236

The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and U5) and proteins, catalyzes the excision of introns from pre-mRNAs in two successive trans-esterification reactions. Step 2 depends upon integral spliceosome constituents such as U5 snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a conformational change in the spliceosome that leads to protection of the 3'ss from targeted RNase H cleavage. This change, which probably reflects binding of the 3'ss PyAG in the catalytic centre of the spliceosome, requires the ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. There is a close functional relationship between Prp8, Prp18, and Slu7, and Prp18 interacts with Slu7, so that together they recruit Prp22 to the spliceosome. Most members of the family carry a zinc-finger of the CCHC-type upstream of this domain. Length = 236

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	395
KOG2560	529	consensus RNA splicing factor - Slu7p [RNA process	100.0
PF11708	239	Slu7: Pre-mRNA splicing Prp18-interacting factor;	100.0
PF09736	145	Bud13: Pre-mRNA-splicing factor of RES complex; In	87.08

>KOG2560 consensus RNA splicing factor - Slu7p [RNA processing and modification]

Probab=100.00  E-value=1.6e-130  Score=987.03  Aligned_cols=371  Identities=57%  Similarity=0.946  Sum_probs=327.9

Q ss_pred             CCCCCCCcccccccccccccccccCccCCCceeec-cccccccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040625            1 CGAMTHNAKSCMERPRKIGAKWTNMHIAPDEKIES-FELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLK   79 (395)
Q Consensus         1 CGAmTHk~KDClERPRK~GAk~Tg~dI~~De~iq~-~~ldyDaKRDRWnGYD~~ey~~Vveeye~~e~~r~~~~~~~~~~   79 (395)
                      ||||||+.|||||||||+||+|||.+|++||+||+ +++|||+||||||||||++|++||++|+++++++.+-.++++++
T Consensus       118 CGAmtHk~KDCmERPRK~gAk~t~~Nia~De~iq~~~~~dyD~KRDRWnGYdps~y~~vIe~yEk~eeak~K~l~~~q~~  197 (529)
T KOG2560|consen  118 CGAMTHKVKDCMERPRKVGAKYTDLNIAPDEKIQSVLELDYDGKRDRWNGYDPSEYKEVIERYEKLEEAKIKGLKEQQKN  197 (529)
T ss_pred             hhhhhcchHHHhhcchhhcccCCCcccCcccccccccccccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999 89999999999999999999999999999999995543333321


Q ss_pred             HHHhhhhccCCCCCCCCCCCchhhhhhhhhhhhhhhcchhhhhhhhhcccCCCCCCcccccccccchHHHhhcCCCCCCc
Q 040625           80 KLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAY  159 (395)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~d~~~~d~de~Ky~e~~dm~~~k~D~k~r~~~~~~~~tvRnLRIREDtAKYL~NLD~nSA~  159 (395)
                                ++..  ..+.+++.++.|++.|+|.++|.+.     +|..+++++.|||||||||||||||+|||+||||
T Consensus       198 ----------~d~~--~~d~eE~~~~~dee~y~D~a~~~k~-----v~~~d~~s~iTvrnLRiRED~AkYL~nld~Nsa~  260 (529)
T KOG2560|consen  198 ----------GDEA--LWDTEEGIEDLDEELYADFADMLKT-----VRDTDDGSRITVRNLRIREDTAKYLRNLDVNSAY  260 (529)
T ss_pred             ----------Cccc--ccccccccchhhHHhhhhhhccccc-----ccccCCCceeeeecceechhHHHHHHhcCCcccc
Confidence                      1111  1122333445588999999988765     3445667777999999999999999999999999


Q ss_pred             cCCCCcccccCCCCCCCCCCCccCCCCccccchhhHHHHHHh---------------------------hHHHHHHHHHH
Q 040625          160 YDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALEFKQLN---------------------------NYNVIKEKLKS  212 (395)
Q Consensus       160 YDPKTRsMRdnp~~~~~~~~~~faGdnf~R~SGda~e~~~lQ---------------------------~f~~kke~~k~  212 (395)
                      |||||||||++|+|+.++....|.|+||||+||++.+|.+||                           .|+.+++.|+.
T Consensus       261 YDPKSRsMReep~~~~~~~e~~~~gdnfvr~SGe~~~~~qlq~FAweA~~kG~~~H~~A~Ptk~Ell~k~~k~kke~lK~  340 (529)
T KOG2560|consen  261 YDPKSRSMREEPLPGKDPNEDEYSGDNFVRNSGEALEFNQLQMFAWEAFDKGVDVHMQADPTKLELLYKENKVKKETLKK  340 (529)
T ss_pred             cCccccccccCCCCCCChhhhhhcccceeeccchhhhHHHHHHHHHHHhcccceeeeecCcHHHHHHHHHhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999                           88899999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchhhhhhcccchheeeccccccccCcccccccccchhhhccCCCceeeeccccCCccccccc
Q 040625          213 RLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDRAGRIIQGVESFLPRSKYEEDVYINNHTSVWGSWWKDHQWGYKCC  292 (395)
Q Consensus       213 ~~k~~ileKYGg~e~~~~~p~elll~qtE~yvEY~~~G~~ikg~~k~~~kSkY~EDv~~nnHTsVWGSy~~~~~WGY~CC  292 (395)
                      +++++||+||||.+|++.+|++|||+|||.||+|++.|.||||+++.+++|+|+||||+|||||||||||..|+|||+||
T Consensus       341 q~kq~il~kYG~~~~~d~~p~elll~qte~~iey~rkg~v~KG~e~~~~~S~yeedV~~~nht~vwgs~w~~~rwgykcc  420 (529)
T KOG2560|consen  341 QTKQEILDKYGGGEHKDLPPKELLLAQTEEYIEYSRKGKVIKGQEKIVPKSKYEEDVYINNHTSVWGSFWKEGRWGYKCC  420 (529)
T ss_pred             HHHHHHHhhcCCccccccChHhhhccccHHHHHHhhccceecccccccccccchhheeccccchhhhhhhhccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccchhhhhhhhcc-------------ccchHhhhhhccCCCCCCCcccchHHHHHHHHHHHHHhhhhhhhh
Q 040625          293 KQTIKNNLMKANVARKAASEDM-------------RAPAEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDER  359 (395)
Q Consensus       293 ~s~~knsyCtg~~~g~~a~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~kl~~a~~~e~~~~~~~~d~r  359 (395)
                      ||||+||||||.+ |++|+...             ++.++++.+..|+...+.+.+++++.+..++..++     ..|+|
T Consensus       421 ~~f~~~syctg~~-g~e~~~~~~~~~~~~~~~~~~~~~~e~k~~~~~~~~~~~~~~~~~~~~~ss~~~~e-----~~d~r  494 (529)
T KOG2560|consen  421 HQFIKNSYCTGSA-GIEAVAEELSKASRKEASKEPPKKVEEKEMERWGERKPEDLDSNEESLPSSLSKEE-----EKDER  494 (529)
T ss_pred             HHHHhhhcccCcc-chhHHhHHHhhhhhhhccCCChhhhHHhhhhcccccchhhhccccccccccccchh-----hhhhh
Confidence            9999999999999 99887521             12244556778887666666666666666666655     36999


Q ss_pred             ccchhhcccCCCCHHHHHHHHhhhcCCCCchhhcc
Q 040625          360 KRKYNVRWNDEVTAEEMEAYRMKKIHHDDPMKDFL  394 (395)
Q Consensus       360 kR~yn~~~~~~vteeemEaYr~kr~~~dDPMa~~l  394 (395)
                      ||+||+||...||+||||||||+|+|++|||++||
T Consensus       495 kr~yn~~y~~~~t~~emeayr~kr~~~~dpm~~f~  529 (529)
T KOG2560|consen  495 KRKYNSMYSNAPTEEEMEAYRMKRVHHEDPMAAFM  529 (529)
T ss_pred             cccccccccCCCCHHHHHHHHhcCCCccCchhhcC
Confidence            99999999779999999999999999999999997

>PF11708 Slu7: Pre-mRNA splicing Prp18-interacting factor; InterPro: IPR021715 The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and U5) and proteins, catalyses the excision of introns from pre-mRNAs in two successive trans-esterification reactions

Probab=100.00  E-value=8.7e-78  Score=572.58  Aligned_cols=211  Identities=56%  Similarity=0.895  Sum_probs=189.8

Q ss_pred             ccccccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCchhhhhhhhhhhhhhhc
Q 040625           37 ELDYDGKRDRWNGFDPATYALVIERYEARDEARRKYLKEQQLKKLEEKNSKQNGEGGVSEEDDDEDALKVDEAKVDESKQ  116 (395)
Q Consensus        37 ~ldyDaKRDRWnGYD~~ey~~Vveeye~~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~de~Ky~e~~d  116 (395)
                      +|+|||||||||||||++|++||++|+++++++++++.+++                 .+...+++++++++++|.+..+
T Consensus         1 ~l~yDaKRDRWnGYd~~ey~~vve~~e~~e~~r~~~~~~~~-----------------~~~~~d~d~~~e~~~~~~~~~d   63 (239)
T PF11708_consen    1 ELDYDAKRDRWNGYDPEEYKEVVEEYEKIEEARKKLKAEKL-----------------EDDSDDEDEEDEDEELYLDEAD   63 (239)
T ss_pred             CCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------ccccccchhhhhhhhcccchhh
Confidence            48999999999999999999999999999999998754332                 1222344555666788999888


Q ss_pred             chhhhhhhhhcccCCCCCCcccccccccchHHHhhcCCCCCCccCCCCcccccCCCCCCCCCCCccCCCCccccchhhHH
Q 040625          117 MDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRLSGQALE  196 (395)
Q Consensus       117 m~~~k~D~k~r~~~~~~~~tvRnLRIREDtAKYL~NLD~nSA~YDPKTRsMRdnp~~~~~~~~~~faGdnf~R~SGda~e  196 (395)
                      |+  +.++       ++++|+|||||||||||||+|||+|||||||||||||++|+  .++...+|+|+||||+|||+.+
T Consensus        64 ~~--~~~~-------k~~~t~rnLRiREDtAkYL~NLd~nsa~YDPKSRsmrd~p~--~~~~~~~~~gdnFvR~sGea~e  132 (239)
T PF11708_consen   64 MG--KKDS-------KTRITVRNLRIREDTAKYLLNLDSNSAYYDPKSRSMRDNPA--KDPGDVLFAGDNFVRLSGEAQE  132 (239)
T ss_pred             cc--cccc-------ccccccccccccccHHHHHHhCCCCCccCCCCccccccCCC--CChhhccccccCceeccccHHH
Confidence            87  3443       44559999999999999999999999999999999999997  7788899999999999999999


Q ss_pred             HHHHh----------------------------hHHHHHHHHHHHHHHHHHHHhCCCCCCCcchhhhhhcccchheeecc
Q 040625          197 FKQLN----------------------------NYNVIKEKLKSRLKDIIAEKYGNAASEEEIPRELLLGQSERQVEYDR  248 (395)
Q Consensus       197 ~~~lQ----------------------------~f~~kke~~k~~~k~~ileKYGg~e~~~~~p~elll~qtE~yvEY~~  248 (395)
                      |++||                            +|+++|++++.+.+++||+||||++|+..+|++++|+|||.||||++
T Consensus       133 ~~~lq~FAWea~~kg~~~~hl~AnPT~~E~l~k~~~~kk~~~~~~~k~~ll~kYGg~e~~~~~~~e~~~~qtE~yvey~~  212 (239)
T PF11708_consen  133 FEKLQRFAWEAAKKGGLDVHLQANPTKAELLRKEFKEKKEELKEEKKQSLLEKYGGEEHLDKPPKELLLAQTERYVEYDR  212 (239)
T ss_pred             HHHHHHHHHHHHhccCCceeeeeCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhhhcccccccccccc
Confidence            99999                            88899999999999999999999999999999999999999999999


Q ss_pred             ccccccCcccccccccchhhhccCCCceeeec
Q 040625          249 AGRIIQGVESFLPRSKYEEDVYINNHTSVWGS  280 (395)
Q Consensus       249 ~G~~ikg~~k~~~kSkY~EDv~~nnHTsVWGS  280 (395)
                      +     |.++++++|||+||||||||||||||
T Consensus       213 ~-----g~~~~~~kSkY~EDv~~~NHtsVWGS  239 (239)
T PF11708_consen  213 S-----GAEKAKAKSKYEEDVYINNHTSVWGS  239 (239)
T ss_pred             c-----ccccccccccchhhhccCCCCeecCC
Confidence            9     78999999999999999999999998

Step 2 depends upon integral spliceosome constituents such as U5 snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a conformational change in the spliceosome that leads to protection of the 3'ss from targeted RNase H cleavage. This change, which probably reflects binding of the 3'ss PyAG in the catalytic centre of the spliceosome, requires the ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. There is a close functional relationship between Prp8, Prp18, and Slu7, and Prp18 interacts with Slu7, so that together they recruit Prp22 to the spliceosome. Most members of the family carry a zinc-finger of the CCHC-type upstream of this domain.

>PF09736 Bud13: Pre-mRNA-splicing factor of RES complex; InterPro: IPR018609 Bud site selection protein 13, also known as pre-mRNA-splicing factor CWC26, belongs to the pre-mRNA retention and splicing (RES) complex

Probab=87.08  E-value=0.67  Score=42.04  Aligned_cols=27  Identities=26%  Similarity=0.391  Sum_probs=24.2

Q ss_pred             cCCCCHHHHHHHHhhhcCCCCchhhcc
Q 040625          368 NDEVTAEEMEAYRMKKIHHDDPMKDFL  394 (395)
Q Consensus       368 ~~~vteeemEaYr~kr~~~dDPMa~~l  394 (395)
                      ....+.++|++-.+.+.+.+|||+.|+
T Consensus        65 aR~~dD~~~~~~lk~~~r~~DPm~~f~   91 (145)
T PF09736_consen   65 ARYADDEDLNEELKEQERWDDPMAAFL   91 (145)
T ss_pred             cchhhhHHHHHHHHhcccccCcHHHHh
Confidence            345789999999999999999999997

May also be involved in positioning the proximal bud pole signal [, , ]. The presence of RES subunit homologues in numerous eukaryotes suggests that its function is evolutionarily conserved [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	395
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 60/456 (13%), Positives = 135/456 (29%), Gaps = 131/456 (28%)

Query: 21  KWTNMHIAPDEKIESFELD-YDGKRDR-WNG---FDPATYALVIERYEARDEARRKYLKE 75
           K+    I  +++  S     Y  +RDR +N    F        + R +   + R+     
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQA---- 143

Query: 76  QQLKKLE-EKNSKQNGEGG----------------------------VSEEDDDEDALKV 106
             L +L   KN   +G  G                            +   +  E  L++
Sbjct: 144 --LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 107 DEAKVDESKQMDFAKVE--KRVRTTGGGSTGTVRNLRIREDTAKYLLNLD-VNSA----Y 159
            +  + +      ++ +    ++         +R L   +     LL L  V +A     
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 160 YDPKTRSM---REDPLPDADPNEKFYGGDNQNRLSGQALEFKQLNNYNVIKEKLKSRLKD 216
           ++   + +   R   + D               LS        L+++++     +   K 
Sbjct: 262 FNLSCKILLTTRFKQVTDF--------------LSAATTTHISLDHHSMTLTPDEV--KS 305

Query: 217 IIAEKYGNAASEEEIPREL---------LLGQSER----------QVEYDRAGRIIQ-GV 256
           ++ +        +++PRE+         ++ +S R           V  D+   II+  +
Sbjct: 306 LLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 257 ESFLP---RSKYE------EDVYINNHTSVWGSWWKDHQWGYKCCKQTIKNNLMKANVAR 307
               P   R  ++         +I   T +    W D                +  +   
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIP--TILLSLIWFD----------------VIKSDVM 405

Query: 308 KAASEDMRAPAEEKNLATWGTDVPDNLNLDQKQLAEALRKEDERKKEEKDERKRKYNVRW 367
              ++  +    EK        +P  + L+ K   E       R   +     + ++   
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLEN-EYALHRSIVDHYNIPKTFD--S 461

Query: 368 NDEVTAEEME------AYRMKKIHHDDPMKDF--LY 395
           +D +     +       + +K I H + M  F  ++
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	395
1nc8_A	29	Nucleocapsid protein; HIV-2, RNA recognition, zinc	85.53

>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A

Probab=85.53  E-value=0.35  Score=31.25  Aligned_cols=18  Identities=44%  Similarity=1.042  Sum_probs=16.3

Q ss_pred             CCCCCCCcccccccccccc
Q 040625            1 CGAMTHNAKSCMERPRKIG   19 (395)
Q Consensus         1 CGAmTHk~KDClERPRK~G   19 (395)
                      ||-.+|-.++|-. |||+|
T Consensus        12 Cgk~GH~ar~C~~-prkkg   29 (29)
T 1nc8_A           12 CGKEGHSARQCRA-PRRQG   29 (29)
T ss_dssp             TSCBSSCGGGCCS-SSSCC
T ss_pred             CCccccCHhHCcc-cccCC
Confidence            9999999999987 88876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	395
d1nc8a_	29	HIV nucleocapsid {Human immunodeficiency virus typ	89.93

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=89.93  E-value=0.062  Score=33.86  Aligned_cols=18  Identities=44%  Similarity=1.042  Sum_probs=16.9

Q ss_pred             CCCCCCCcccccccccccc
Q 040625            1 CGAMTHNAKSCMERPRKIG   19 (395)
Q Consensus         1 CGAmTHk~KDClERPRK~G   19 (395)
                      ||.++|..+.|-- |||+|
T Consensus        12 CGkeGH~ar~CrA-PRkkg   29 (29)
T d1nc8a_          12 CGKEGHSARQCRA-PRRQG   29 (29)
T ss_dssp             TSCBSSCGGGCCS-SSSCC
T ss_pred             CCccchhhhhccC-cccCC
Confidence            9999999999986 99987