Citrus Sinensis ID: 040629

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780------
NFSNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDDGEVGAVSMRRSNHGLLFVDD
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHcEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHcccccccccccccccccHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHccccccEEEEEccccccccccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHcccccEEEEcccccccccccccccccccccHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccc
cccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEEEHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHEHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccEEEEEEEEEEcccccccEEEEccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEcccccccccccccccHHHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHccccccEEEEEccccccccHcccHcHHHccccccccHHHcccccccEEEEEEEEEcccccccccccEEEcccccccccc
NFSNTCIILNvtttngiwpsknplfepiplLIVQLAFIITITRSLYFILrplrqprlvtdilgglllgpsffgrkayfsklfpvrsvtTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLlhlptdpsgclfwgltltvtgfpAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVlpirsspenapaAIISTIAFSLTCIYAVRPGLEWLIRRTskgnnnaysdSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMcgirtnvhkVHNWFLAGFVIILTCFCKILGTLLvshsyhmplqdrlalgvlMNTKGILAVVVLNLGwdkkvlhdqEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLelsnatkesplCIFALHLVELRGSASAVLIVHTssknsaykrvgsspsdrIVNIFEAFenrstgisvhpltamspfitMHEDVCNLAEDKHIAFMIlpfhnqagnsngdttgsspfrevnknilanapcsvgifvdkgqgksdngrMQHVVMVFIGGPDDREALALAWRmsanpsvqlTVLRLHSRynnnvkeediryskcidgrqsqvdAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATAdllgwsecpeigaigDLLVYSDFIRASVLVVqhypgddgevgavsmrrsnhgllfvdd
NFSNTCIILNvtttngiwpsknPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHtssknsaykrvgsspsdRIVNIFEAfenrstgisvHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRlqtagehnvnyyEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDDGEVGAVSMRRsnhgllfvdd
NFSNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDIlgglllgPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDDGEVGAVSMRRSNHGLLFVDD
****TCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKS*SKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHT****************RIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHN*****************VNKNILANAPCSVGIFVDKGQ*****GRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDDGEVGA***************
**SNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSS************************CVHGVGNVLGTINLLEL*****ESPLCIFALHLVELRGSASA***********************IVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFH***************FREVNKNILANAPCSVGIFVDKGQG****GRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYN*******************QVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVG*******************EIGAIGDLLVYSDFIRASVLVVQ**************************
NFSNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSK**********PSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDDGEVGAVSMRRSNHGLLFVDD
*FSNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTS***********SPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRY**************IDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDD********************
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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NFSNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRLHSRYNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQKVGLYIVGREVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPGDDGEVGAVSMRRSNHGLLFVDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query786 2.2.26 [Sep-21-2011]
Q9SIT5821 Cation/H(+) antiporter 15 yes no 0.960 0.919 0.441 0.0
Q8VYD4867 Cation/H(+) antiporter 23 no no 0.937 0.850 0.400 1e-152
Q9FFR9810 Cation/H(+) antiporter 18 no no 0.965 0.937 0.378 1e-140
Q9SKA9832 Cation/H(+) antiporter 21 no no 0.922 0.871 0.385 1e-137
Q9LUN4800 Cation/H(+) antiporter 19 no no 0.960 0.943 0.375 1e-135
Q9SUQ7820 Cation/H(+) antiporter 17 no no 0.944 0.904 0.368 1e-132
Q9M353842 Cation/H(+) antiporter 20 no no 0.944 0.881 0.358 1e-124
Q1HDT3811 Cation/H(+) antiporter 16 no no 0.926 0.897 0.341 1e-119
Q9LMJ1829 Cation/H(+) antiporter 14 no no 0.949 0.899 0.305 1e-103
O22920831 Cation/H(+) symporter 13 no no 0.944 0.892 0.310 5e-99
>sp|Q9SIT5|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1 Back     alignment and function desciption
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/781 (44%), Positives = 510/781 (65%), Gaps = 26/781 (3%)

Query: 6   CIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGL 65
           C   ++ TTNG+W   NPL   +PL ++QL  ++ +TR   FIL+P RQPR++++ILGG+
Sbjct: 15  CYAPSMITTNGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKPFRQPRVISEILGGI 74

Query: 66  LLGPSFFGRKAYFSK-LFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNI 124
           +LGPS  GR   F+  +FP RSV  LET+A + L  ++FL+G+EMD+  ++ + KR L I
Sbjct: 75  VLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDIMVVRKTGKRALTI 134

Query: 125 AAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTD 184
           A  G ++P  +GA   F   R        +  LF G+ L+VT FP +  IL ELKL+ T+
Sbjct: 135 AIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVTAFPVLARILAELKLINTE 194

Query: 185 IGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAI---ISTIAFSLTCIYAVRPGLEW 241
           IGR++ S A+++D+ +WIL+A+ + +  S + + A++   IS+  F   C++ VRPG+ W
Sbjct: 195 IGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSAVFIAVCVFVVRPGIAW 254

Query: 242 LIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLF 301
           +IR+T +G N  +S+ ++C  L GV+I  F+T+  GT S+ GAFVFG+++P+  LG  L 
Sbjct: 255 IIRKTPEGEN--FSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTLI 312

Query: 302 ERFADFVSGIMLPLFFAMCGIRTNVHKVH---NWFLAGFVIILTCFCKILGTLLVSHSYH 358
           E+  DFVSG++LPLFFA+ G++TN+  +     W     VI L C  K++GT++V+  + 
Sbjct: 313 EKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGKVIGTVIVAFFHG 372

Query: 359 MPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMY 418
           MP+++ + LG+L+NTKG++ ++VLN+G D+KVL D+ +A MV+  ++MTG + PI++ +Y
Sbjct: 373 MPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVMTGVITPIVTILY 432

Query: 419 RSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHL 478
           +   + + YK R+IQ+ K  +ELR+L CVH   NV   INLLE S+ TK SP+CI+ LHL
Sbjct: 433 KPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHL 492

Query: 479 VELRGSASAVLIVHTSSKNS--AYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPF 536
           VEL G ASA+LIVH + K+   A  R  +  SD I+N FE +E  +  ++V PLTA+SP+
Sbjct: 493 VELTGRASAMLIVHNTRKSGRPALNRTQAQ-SDHIINAFENYEQHAAFVAVQPLTAISPY 551

Query: 537 ITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVD 596
            TMHEDVC+LAEDK ++F+I+PFH Q     G  + +  +R VN+N+L N+PCSVGI VD
Sbjct: 552 STMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLENSPCSVGILVD 611

Query: 597 KGQGKS----DNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLR-LHSRYNNN- 650
           +G   +     N     V ++F GGPDDREALA AWRM+ +P + LTVLR +H     + 
Sbjct: 612 RGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVLRFIHDEDEADT 671

Query: 651 -----VKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALR 705
                  + D++  K    +Q Q+D +++N FR + A   ++ Y EK+V+N EET  A+R
Sbjct: 672 ASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESIVYIEKLVSNGEETVAAVR 731

Query: 706 EMELQKVGLYIVGR-EVMASAATADLLGWSECPEIGAIGDLLVYSDF-IRASVLVVQHYP 763
            M+     L+IVGR E M+S  TA L  WSECPE+GAIGDLL  SDF    SVLVVQ Y 
Sbjct: 732 SMDSSH-DLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 790

Query: 764 G 764
           G
Sbjct: 791 G 791
May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VYD4|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1 Back     alignment and function description
>sp|Q9FFR9|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKA9|CHX21_ARATH Cation/H(+) antiporter 21 OS=Arabidopsis thaliana GN=CHX21 PE=2 SV=2 Back     alignment and function description
>sp|Q9LUN4|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUQ7|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1 Back     alignment and function description
>sp|Q9M353|CHX20_ARATH Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1 Back     alignment and function description
>sp|Q1HDT3|CHX16_ARATH Cation/H(+) antiporter 16 OS=Arabidopsis thaliana GN=CHX16 PE=2 SV=1 Back     alignment and function description
>sp|Q9LMJ1|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1 Back     alignment and function description
>sp|O22920|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
255557359862 Na(+)/H(+) antiporter, putative [Ricinus 0.982 0.895 0.478 0.0
255550512834 Na(+)/H(+) antiporter, putative [Ricinus 0.961 0.906 0.471 0.0
224080023816 cation proton exchanger [Populus trichoc 0.965 0.930 0.469 0.0
359477011837 PREDICTED: cation/H(+) antiporter 15-lik 0.964 0.905 0.460 0.0
147785381837 hypothetical protein VITISV_011183 [Viti 0.964 0.905 0.460 0.0
296088536820 unnamed protein product [Vitis vinifera] 0.954 0.914 0.463 0.0
449459268837 PREDICTED: cation/H(+) antiporter 15-lik 0.974 0.915 0.438 0.0
224096008769 cation proton exchanger [Populus trichoc 0.945 0.966 0.452 0.0
357519983831 Cation proton exchanger [Medicago trunca 0.968 0.915 0.442 0.0
356507460827 PREDICTED: cation/H(+) antiporter 15-lik 0.959 0.911 0.432 0.0
>gi|255557359|ref|XP_002519710.1| Na(+)/H(+) antiporter, putative [Ricinus communis] gi|223541127|gb|EEF42683.1| Na(+)/H(+) antiporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/800 (47%), Positives = 535/800 (66%), Gaps = 28/800 (3%)

Query: 1   NFSNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTD 60
           N    C I+N+T  +G W S+NPL + +PLL  QLA +I + R L+++L+PL  PR+VTD
Sbjct: 15  NLPFHCYIVNITAEHGFWQSENPLTQALPLLAWQLAVVIMMNRILFYLLKPLAVPRIVTD 74

Query: 61  ILGGLLLGPSFFGRKAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKR 120
           IL G+LLGPS   +  +FS +FP+RS+ T+ETVAY AL L++F+ GLEMD+ S     K+
Sbjct: 75  ILAGILLGPSALSKTHFFSVMFPLRSIYTVETVAYWALTLHLFMAGLEMDLYSFFRIGKK 134

Query: 121 ELNIAAAGALIPMGVGAGLFFL-TARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELK 179
            +  A A  L+P  +G  L+F+ T+         SGC+FWG  LTVT +P V  IL + K
Sbjct: 135 SIRFAIATILLPFILGICLYFIVTSSRAPSSFRKSGCIFWGAALTVTSYPVVARILADEK 194

Query: 180 LLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGL 239
           LL +DIGRLATSI+ I+++ +W+L++V++P R    NA  ++++T AF+  C   VRP L
Sbjct: 195 LLHSDIGRLATSISFINELFTWVLLSVLIPSRIGGLNALLSLVATAAFTAFCFIVVRPAL 254

Query: 240 EWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGAL 299
             LIR+TS  + N YS+ YLCF L+ V   S V+++ GT SI+GAFVFG+IMP+R L ++
Sbjct: 255 TVLIRKTS--SENKYSEYYLCFILVSVSFFSLVSDMLGTTSIIGAFVFGLIMPNRILASV 312

Query: 300 LFERFADFVSGIMLPLFFAMCGIRTNVHKVHNWFLAGFVIILTCFCKILGTLLVSHSYHM 359
           L E+F DFV+  +LPLFFA  G+R N+  + NW L+ FV++L C  KI+ ++L S+ + +
Sbjct: 313 LLEKFEDFVTAYLLPLFFASMGLRLNIWSITNWGLSLFVLVLCCGVKIVSSMLASYYFKL 372

Query: 360 PLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYR 419
             QD  ALG+L+NTK ILA+++L++G+DK  L  ++Y  M +AI++MTG V+PIIS++Y 
Sbjct: 373 SRQDGFALGILLNTKSILAMLILHMGFDKSYLQVEDYVTMALAILLMTGAVSPIISSIYH 432

Query: 420 SSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLV 479
            + R+++YK R+IQ  +  +E RIL C+   GNV G INLL+ SNAT ESPLC+FALHLV
Sbjct: 433 PNKRLLQYKQRTIQNTRPDSEFRILTCLQSTGNVSGIINLLDSSNATTESPLCVFALHLV 492

Query: 480 ELRGSASAVLIVHTSSKNSAYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITM 539
           EL G ASA+LIVH+  K S      SS S++IV+ FE + N +  +++ PLTA+SPF TM
Sbjct: 493 ELTGRASAMLIVHSPGKKSR-----SSYSEKIVSSFETYSNLNELVAIQPLTALSPFSTM 547

Query: 540 HEDVCNLAEDKHIAFMILPFHN-QAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG 598
           HED+C+LAE+K + F+ILPFH     +   +  GS+ FR VN N+LA+APC+VGIFVD+G
Sbjct: 548 HEDICSLAEEKEVGFLILPFHKLPTPDGKLEDEGSTSFRGVNLNVLAHAPCTVGIFVDRG 607

Query: 599 QG--KSDNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLRL--HSRYNNNVKEE 654
            G     N  M+ + M+FIGGPDDREAL+ AWRMS +  V LTV+R         N++E+
Sbjct: 608 FGIHGESNLTMRQLAMLFIGGPDDREALSYAWRMSLSHGVSLTVVRFLPGEGGQQNIQEQ 667

Query: 655 ----DIRYSKC---IDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREM 707
               D R          RQ ++D EFVNEFRL++AGE  + Y EK+VNN E+   +L+EM
Sbjct: 668 EQVGDARKGAVSIEFLSRQRKLDDEFVNEFRLKSAGEQFMGYEEKIVNNDEDLIESLKEM 727

Query: 708 ELQKVGLYIVGR-EVMASAATADLLGWSECPEIGAIGDLLVYSDFIRASVLVVQHYPG-- 764
             Q   LY+VGR E M S  TA L+ W E PE+GA+GDLL+ S F + SV+V+Q Y G  
Sbjct: 728 H-QIYDLYLVGRGEGMNSPLTAGLMDWCEYPELGALGDLLITSSFAQGSVMVIQQYAGYE 786

Query: 765 -DDGEVG---AVSMRRSNHG 780
             D E G   A S   S HG
Sbjct: 787 EGDEEFGNRIAGSPDGSGHG 806

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550512|ref|XP_002516306.1| Na(+)/H(+) antiporter, putative [Ricinus communis] gi|223544536|gb|EEF46053.1| Na(+)/H(+) antiporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224080023|ref|XP_002305995.1| cation proton exchanger [Populus trichocarpa] gi|222848959|gb|EEE86506.1| cation proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359477011|ref|XP_002262677.2| PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147785381|emb|CAN66285.1| hypothetical protein VITISV_011183 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088536|emb|CBI37527.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449459268|ref|XP_004147368.1| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus] gi|449513321|ref|XP_004164295.1| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224096008|ref|XP_002310518.1| cation proton exchanger [Populus trichocarpa] gi|222853421|gb|EEE90968.1| cation proton exchanger [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357519983|ref|XP_003630280.1| Cation proton exchanger [Medicago truncatula] gi|355524302|gb|AET04756.1| Cation proton exchanger [Medicago truncatula] Back     alignment and taxonomy information
>gi|356507460|ref|XP_003522484.1| PREDICTED: cation/H(+) antiporter 15-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query786
TAIR|locus:2054152821 CHX15 "cation/hydrogen exchang 0.959 0.918 0.438 4.7e-174
TAIR|locus:2031968867 CHX23 "cation/H+ exchanger 23" 0.937 0.850 0.398 1.9e-140
TAIR|locus:2160457810 CHX18 "cation/H+ exchanger 18" 0.963 0.934 0.376 4.2e-134
TAIR|locus:2090462800 CHX19 "cation/H+ exchanger 19" 0.944 0.927 0.373 1.9e-131
TAIR|locus:2128484820 CHX17 "cation/H+ exchanger 17" 0.921 0.882 0.351 6.2e-117
TAIR|locus:2007392829 CHX14 "cation/hydrogen exchang 0.942 0.893 0.303 4.9e-101
TAIR|locus:2024578811 CHX16 "cation/H+ exchanger 16" 0.746 0.723 0.356 1.3e-100
TAIR|locus:2060827831 ATCHX13 [Arabidopsis thaliana 0.944 0.892 0.314 5.6e-100
TAIR|locus:2084370842 CHX20 "cation/H+ exchanger 20" 0.519 0.484 0.375 1.1e-95
TAIR|locus:2166168859 CHX24 "cation/H+ exchanger 24" 0.737 0.675 0.275 9.4e-82
TAIR|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1691 (600.3 bits), Expect = 4.7e-174, P = 4.7e-174
 Identities = 343/782 (43%), Positives = 506/782 (64%)

Query:     6 CIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDIXXXX 65
             C   ++ TTNG+W   NPL   +PL ++QL  ++ +TR   FIL+P RQPR++++I    
Sbjct:    15 CYAPSMITTNGVWQGDNPLDFSLPLFVLQLTLVVVVTRFFVFILKPFRQPRVISEILGGI 74

Query:    66 XXXPSFFGRKAYFSK-LFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNI 124
                PS  GR   F+  +FP RSV  LET+A + L  ++FL+G+EMD+  ++ + KR L I
Sbjct:    75 VLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGVEMDIMVVRKTGKRALTI 134

Query:   125 AAAGALIPMGVGAGLFFLTARLL-HLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQT 183
             A  G ++P  +GA   F   R   HL    +  LF G+ L+VT FP +  IL ELKL+ T
Sbjct:   135 AIGGMVLPFLIGAAFSFSMHRSEDHLGQG-TYILFLGVALSVTAFPVLARILAELKLINT 193

Query:   184 DIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAI---ISTIAFSLTCIYAVRPGLE 240
             +IGR++ S A+++D+ +WIL+A+ + +  S + + A++   IS+  F   C++ VRPG+ 
Sbjct:   194 EIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISSAVFIAVCVFVVRPGIA 253

Query:   241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALL 300
             W+IR+T +G N  +S+ ++C  L GV+I  F+T+  GT S+ GAFVFG+++P+  LG  L
Sbjct:   254 WIIRKTPEGEN--FSEFHICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGLTL 311

Query:   301 FERFADFVSGIMLPLFFAMCGIRTNVHKVHN---WFLAGFVIILTCFCKILGTLLVSHSY 357
              E+  DFVSG++LPLFFA+ G++TN+  +     W     VI L C  K++GT++V+  +
Sbjct:   312 IEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLACAGKVIGTVIVAFFH 371

Query:   358 HMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTM 417
              MP+++ + LG+L+NTKG++ ++VLN+G D+KVL D+ +A MV+  ++MTG + PI++ +
Sbjct:   372 GMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLVALVMTGVITPIVTIL 431

Query:   418 YRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALH 477
             Y+   + + YK R+IQ+ K  +ELR+L CVH   NV   INLLE S+ TK SP+CI+ LH
Sbjct:   432 YKPVKKSVSYKRRTIQQTKPDSELRVLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLH 491

Query:   478 LVELRGSASAVLIVHTSSKNS--AYKRVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSP 535
             LVEL G ASA+LIVH + K+   A  R   + SD I+N FE +E  +  ++V PLTA+SP
Sbjct:   492 LVELTGRASAMLIVHNTRKSGRPALNRT-QAQSDHIINAFENYEQHAAFVAVQPLTAISP 550

Query:   536 FITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFV 595
             + TMHEDVC+LAEDK ++F+I+PFH Q     G  + +  +R VN+N+L N+PCSVGI V
Sbjct:   551 YSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGMESTNPAYRLVNQNLLENSPCSVGILV 610

Query:   596 DKG-QGKS---DNGRMQHVVMVFIGGPDDREALALAWRMSANPSVQLTVLR-LHSRYNNN 650
             D+G  G +    N     V ++F GGPDDREALA AWRM+ +P + LTVLR +H     +
Sbjct:   611 DRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLTVLRFIHDEDEAD 670

Query:   651 V------KEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGAL 704
                     + D++  K    +Q Q+D +++N FR + A   ++ Y EK+V+N EET  A+
Sbjct:   671 TASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAENAEYESIVYIEKLVSNGEETVAAV 730

Query:   705 REMELQKVGLYIVGR-EVMASAATADLLGWSECPEIGAIGDLLVYSDFIRA-SVLVVQHY 762
             R M+     L+IVGR E M+S  TA L  WSECPE+GAIGDLL  SDF    SVLVVQ Y
Sbjct:   731 RSMDSSH-DLFIVGRGEGMSSPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQY 789

Query:   763 PG 764
              G
Sbjct:   790 VG 791
GO:0006812 "cation transport" evidence=IEA;IC
GO:0009507 "chloroplast" evidence=ISM
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS
GO:0006885 "regulation of pH" evidence=IMP
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
TAIR|locus:2031968 CHX23 "cation/H+ exchanger 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024578 CHX16 "cation/H+ exchanger 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084370 CHX20 "cation/H+ exchanger 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166168 CHX24 "cation/H+ exchanger 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SIT5CHX15_ARATHNo assigned EC number0.44170.96050.9196yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
PLN03159832 PLN03159, PLN03159, cation/H(+) antiporter 15; Pro 0.0
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 7e-47
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 4e-38
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 1e-21
PRK03562621 PRK03562, PRK03562, glutathione-regulated potassiu 6e-06
COG4651408 COG4651, RosB, Kef-type K+ transport system, predi 2e-04
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
 Score =  769 bits (1987), Expect = 0.0
 Identities = 359/776 (46%), Positives = 514/776 (66%), Gaps = 28/776 (3%)

Query: 13  TTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFF 72
           TTNGIW   NPL   +PL I+QL  ++  TR L FIL+P RQPR++++ILGG++LGPS  
Sbjct: 26  TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVL 85

Query: 73  GR-KAYFSKLFPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALI 131
           G+ + + + +FP+RSV  LET+A + L  ++FL+G+EMD++ I+ + K+ L IA AG  +
Sbjct: 86  GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMAL 145

Query: 132 PMGVGAGLFFLTARLLHLPTDPSGCLFWGLTLTVTGFPAVTWILGELKLLQTDIGRLATS 191
           P  +G    F+  ++       +  LF G+ L+VT FP +  IL E+KL+ T++GR+A S
Sbjct: 146 PFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMS 205

Query: 192 IAMISDVCSWILVAVVLPIRSSPENAPAA---IISTIAFSLTCIYAVRPGLEWLIRRTSK 248
            A+++D+C+WIL+A+ + +  +   + A+   ++S++AF L C Y VRPG+ W+IRRT +
Sbjct: 206 AALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPE 265

Query: 249 GNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFV 308
           G    +S+ Y+C  L GV+I  F+T+  GT S+ GAFVFG+++P+  LG  L E+  DFV
Sbjct: 266 GE--TFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFV 323

Query: 309 SGIMLPLFFAMCGIRTNVHKVHN---WFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRL 365
           SG++LPLFFA+ G++TNV K+     W L   VII+    KI+GT++++  Y MP ++ +
Sbjct: 324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGI 383

Query: 366 ALGVLMNTKGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPIISTMYRSSTRII 425
            LG LMNTKG++ ++VLN+G D++VL D+ +AVMV+  V MT  + P+++ +YR + R++
Sbjct: 384 TLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPARRLV 443

Query: 426 KYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSA 485
            YK R+IQR+K  AELR+L CVH   NV   INLLE S+ TK SP+CI+ LHLVEL G A
Sbjct: 444 GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRA 503

Query: 486 SAVLIVHTSSKNSAYKRVGSSP--SDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDV 543
           SA+LIVH + K S    +  +   SD I+N FE +E  +  +SV PLTA+SP+ TMHEDV
Sbjct: 504 SAMLIVHNTRK-SGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDV 562

Query: 544 CNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKG-QGKS 602
           CNLAEDK ++ +I+PFH Q     G    +  FR VN+N+LANAPCSVGI VD+G  G +
Sbjct: 563 CNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGAT 622

Query: 603 DNGRMQ---HVVMVFIGGPDDREALALAWRMSANPSVQLTVLRL---------HSRYNNN 650
                Q   HV ++F GGPDDREALA AWRMS +P + LTV+R           S+  ++
Sbjct: 623 RLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASS 682

Query: 651 VKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREETTGALREMELQ 710
             +  I   +    ++ Q+D E++NEFR + AG  ++ Y EKVV+N EET  A+R M+  
Sbjct: 683 PSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMD-S 741

Query: 711 KVGLYIVGR-EVMASAATADLLGWSECPEIGAIGDLLVYSDFIR-ASVLVVQHYPG 764
              L+IVGR + M S  TA L  WSECPE+GAIGDLL  SDF    SVLVVQ Y G
Sbjct: 742 AHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVG 797

Length = 832
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 786
PLN03159832 cation/H(+) antiporter 15; Provisional 100.0
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 100.0
PRK03562621 glutathione-regulated potassium-efflux system prot 100.0
PRK10669558 putative cation:proton antiport protein; Provision 100.0
PRK03659601 glutathione-regulated potassium-efflux system prot 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 100.0
PRK05326562 potassium/proton antiporter; Reviewed 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 100.0
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 100.0
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 99.96
TIGR00844810 c_cpa1 na(+)/h(+) antiporter. This model is specif 99.96
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.94
COG3263574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.94
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.93
PRK11175305 universal stress protein UspE; Provisional 99.79
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 99.78
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.72
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.72
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.43
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 99.43
PRK15456142 universal stress protein UspG; Provisional 99.18
PRK15005144 universal stress protein F; Provisional 99.16
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.14
KOG1966670 consensus Sodium/hydrogen exchanger protein [Inorg 99.13
PRK15118144 universal stress global response regulator UspA; P 99.09
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 99.05
PRK09982142 universal stress protein UspD; Provisional 99.05
cd01987124 USP_OKCHK USP domain is located between the N-term 99.02
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 99.0
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 98.93
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 98.93
PF00582140 Usp: Universal stress protein family; InterPro: IP 98.93
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 98.89
PRK10116142 universal stress protein UspC; Provisional 98.87
PRK11175305 universal stress protein UspE; Provisional 98.8
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 98.78
PRK15005144 universal stress protein F; Provisional 98.67
PRK09982142 universal stress protein UspD; Provisional 98.66
cd00293130 USP_Like Usp: Universal stress protein family. The 98.66
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 98.64
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 98.58
PRK15456142 universal stress protein UspG; Provisional 98.54
PF00582140 Usp: Universal stress protein family; InterPro: IP 98.54
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 98.45
cd01987124 USP_OKCHK USP domain is located between the N-term 98.44
PRK10116142 universal stress protein UspC; Provisional 98.38
PRK15118144 universal stress global response regulator UspA; P 98.38
COG0589154 UspA Universal stress protein UspA and related nuc 98.37
cd00293130 USP_Like Usp: Universal stress protein family. The 98.15
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 97.97
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 97.96
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 97.96
PRK12652357 putative monovalent cation/H+ antiporter subunit E 97.72
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 97.62
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 97.49
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 97.29
COG0385319 Predicted Na+-dependent transporter [General funct 97.25
TIGR00698335 conserved hypothetical integral membrane protein. 97.24
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 97.23
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 97.1
COG0589154 UspA Universal stress protein UspA and related nuc 97.04
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 96.89
TIGR00832328 acr3 arsenical-resistance protein. The first prote 96.83
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 96.56
PRK03562621 glutathione-regulated potassium-efflux system prot 96.47
TIGR00841286 bass bile acid transporter. Functionally character 96.44
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 96.41
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 96.32
PRK03659601 glutathione-regulated potassium-efflux system prot 96.17
PRK10669558 putative cation:proton antiport protein; Provision 96.14
COG3180352 AbrB Putative ammonia monooxygenase [General funct 95.99
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 95.98
PRK10490 895 sensor protein KdpD; Provisional 95.86
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 95.84
COG3493438 CitS Na+/citrate symporter [Energy production and 95.66
PRK05326562 potassium/proton antiporter; Reviewed 95.63
COG2855334 Predicted membrane protein [Function unknown] 95.46
COG0475397 KefB Kef-type K+ transport systems, membrane compo 95.34
PRK03818552 putative transporter; Validated 95.17
PF03956191 DUF340: Membrane protein of unknown function (DUF3 95.14
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 95.13
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 95.03
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 95.01
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 94.91
PLN03159 832 cation/H(+) antiporter 15; Provisional 94.5
TIGR00698335 conserved hypothetical integral membrane protein. 94.06
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 94.03
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 93.6
PRK10490 895 sensor protein KdpD; Provisional 93.51
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 93.49
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 93.36
PRK04972558 putative transporter; Provisional 93.33
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 93.27
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 93.13
TIGR00930953 2a30 K-Cl cotransporter. 92.97
COG2855334 Predicted membrane protein [Function unknown] 92.51
PF03977360 OAD_beta: Na+-transporting oxaloacetate decarboxyl 92.16
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 92.08
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 91.69
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 91.22
PRK04288232 antiholin-like protein LrgB; Provisional 90.92
TIGR01625154 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati 90.81
TIGR03136399 malonate_biotin Na+-transporting malonate decarbox 90.63
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 90.44
PRK03359256 putative electron transfer flavoprotein FixA; Revi 89.81
COG2985544 Predicted permease [General function prediction on 89.78
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 88.89
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 87.58
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 87.24
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 86.59
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 86.55
PRK10711231 hypothetical protein; Provisional 86.44
TIGR00659226 conserved hypothetical protein TIGR00659. Members 86.21
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 85.66
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 84.5
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 84.38
PRK04972558 putative transporter; Provisional 84.28
PRK12342254 hypothetical protein; Provisional 84.16
PF01012164 ETF: Electron transfer flavoprotein domain; InterP 84.0
COG3329372 Predicted permease [General function prediction on 83.65
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 83.02
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 82.26
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 81.9
PF04172215 LrgB: LrgB-like family ; InterPro: IPR007300 The t 81.72
TIGR01109354 Na_pump_decarbB sodium ion-translocating decarboxy 80.12
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-149  Score=1331.84  Aligned_cols=765  Identities=47%  Similarity=0.841  Sum_probs=689.4

Q ss_pred             CcccccccccCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhCccCCCc-ccccccc
Q 040629            3 SNTCIILNVTTTNGIWPSKNPLFEPIPLLIVQLAFIITITRSLYFILRPLRQPRLVTDILGGLLLGPSFFGR-KAYFSKL   81 (786)
Q Consensus         3 ~~~c~~~~~~~~~g~~~~~~pl~~~l~~~l~~i~lil~~~~~~~~l~~rl~~P~iv~~ilaGiilGP~~lg~-~~~~~~~   81 (786)
                      +.+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|+ +.+.+.+
T Consensus        16 ~~~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~   95 (832)
T PLN03159         16 SVVCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTI   95 (832)
T ss_pred             CcccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhc
Confidence            446996657899999999999999999999999999999999999999999999999999999999999999 8888889


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHhhccChhHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc--hHHHHH
Q 040629           82 FPVRSVTTLETVAYMALDLYIFLIGLEMDVNSIKSSSKRELNIAAAGALIPMGVGAGLFFLTARLLHLPTDP--SGCLFW  159 (786)
Q Consensus        82 fp~~~~~~l~~l~~igl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~--~~~l~l  159 (786)
                      ||.++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++++++++++.. . .....  ..++++
T Consensus        96 fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~-~~~~~~~~~~l~~  173 (832)
T PLN03159         96 FPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-V-SRNVHQGTFILFL  173 (832)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-c-ccccchhHHHHHH
Confidence            9988888999999999999999999999999999999999999999999999999988887743 2 11111  157899


Q ss_pred             HHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHHHHHHH
Q 040629          160 GLTLTVTGFPAVTWILGELKLLQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPEN---APAAIISTIAFSLTCIYAVR  236 (786)
Q Consensus       160 g~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~r  236 (786)
                      |+++|+||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+..   .+|.++..+++++++.+++|
T Consensus       174 g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r  253 (832)
T PLN03159        174 GVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVR  253 (832)
T ss_pred             HHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988776544322   45667777788888889999


Q ss_pred             HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCCCchhHHHHHHHHHHHHHhhHHHH
Q 040629          237 PGLEWLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPDRDLGALLFERFADFVSGIMLPLF  316 (786)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~~~~~~~l~~~l~~~~~~l~~Plf  316 (786)
                      |++.|+.++++++  ++.++.++.++++++++++++++.+|+|+++|||++|+++|+++.++++.+|++++++++|+|+|
T Consensus       254 ~~~~~~~r~~~~~--~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlF  331 (832)
T PLN03159        254 PGIWWIIRRTPEG--ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLF  331 (832)
T ss_pred             HHHHHHHHhCcCC--CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988  77889999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHhhhhcccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhhhHHHHHhhccccCCCCCh
Q 040629          317 FAMCGIRTNVHKVH---NWFLAGFVIILTCFCKILGTLLVSHSYHMPLQDRLALGVLMNTKGILAVVVLNLGWDKKVLHD  393 (786)
Q Consensus       317 F~~~G~~~d~~~l~---~~~~~~~ii~~~~~~K~i~~~l~~~~~~~~~~~~~~lgl~l~~rG~v~l~~~~~~~~~~~i~~  393 (786)
                      |+++|+++|+..+.   .|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++.+.|++++
T Consensus       332 Fv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~  411 (832)
T PLN03159        332 FAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDD  411 (832)
T ss_pred             HHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCc
Confidence            99999999998876   466667778888999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHhhccchhhhhhccccccccccCCCcceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEE
Q 040629          394 QEYAVMVIAIVIMTGGVAPIISTMYRSSTRIIKYKGRSIQRAKQGAELRILACVHGVGNVLGTINLLELSNATKESPLCI  473 (786)
Q Consensus       394 ~~~~~lvl~~vv~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~e~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v  473 (786)
                      +.|++++++++++|.+++|++.++|+|+||+..|++|++|+.++++|+|||+|+|++++++++++|++++++++++|.++
T Consensus       412 ~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~v  491 (832)
T PLN03159        412 ESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICI  491 (832)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecccCCCchhhhhcccCCCcccc-cCCCCCcchHHHHHHHhHhcCCceEEEEeEEecCCCChHHHHHHHHhhcCc
Q 040629          474 FALHLVELRGSASAVLIVHTSSKNSAYK-RVGSSPSDRIVNIFEAFENRSTGISVHPLTAMSPFITMHEDVCNLAEDKHI  552 (786)
Q Consensus       474 ~~lhlvel~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~~~~dI~~~A~e~~a  552 (786)
                      |++||+|+++|++|++++|+.+++..+. ++...++|+++++|+.|++++++++|+++|++||+++||+|||++|+|+++
T Consensus       492 y~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~  571 (832)
T PLN03159        492 YVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV  571 (832)
T ss_pred             EEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence            9999999999999999999876443221 122345899999999999753589999999999999999999999999999


Q ss_pred             cEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCceEEEecCCCCCC----CCCcceEEEEecccCcChHHHHHHHH
Q 040629          553 AFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCSVGIFVDKGQGKS----DNGRMQHVVMVFIGGPDDREALALAW  628 (786)
Q Consensus       553 dlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCsVgIlvdrg~~~~----~~~~~~~I~v~f~Gg~ddreAL~~A~  628 (786)
                      |+||+||||+|+.||++++.+..+|.+|+|||++||||||||||||..+.    .....+||+++|+|||||||||+||+
T Consensus       572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~  651 (832)
T PLN03159        572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW  651 (832)
T ss_pred             CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997632    12456799999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeec-cCCCCc-c-----ccccccc-c-ccCcchhhhHHHHHHHHHhhcCCCCceEEEEEEeCChHH
Q 040629          629 RMSANPSVQLTVLRLHS-RYNNNV-K-----EEDIRYS-K-CIDGRQSQVDAEFVNEFRLQTAGEHNVNYYEKVVNNREE  699 (786)
Q Consensus       629 rma~~~~~~ltvv~~~~-~~~~~~-~-----~~~~~~~-~-~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e  699 (786)
                      |||+||++++||+||++ +...+. +     .++..+. . ..++.|+++||++++|||.++.+++++.|+|++|+|++|
T Consensus       652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e  731 (832)
T PLN03159        652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE  731 (832)
T ss_pred             HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence            99999999999999993 221100 0     0000011 1 112678899999999999999888999999999999999


Q ss_pred             HHHHHHHhhhcCccEEEEccC-CCCcccccccCCcCCCCccccchhhhhcCCCC-CccEEEEeeecCCCCCCCcc
Q 040629          700 TTGALREMELQKVGLYIVGRE-VMASAATADLLGWSECPEIGAIGDLLVYSDFI-RASVLVVQHYPGDDGEVGAV  772 (786)
Q Consensus       700 ~~~~i~~~~~~~~DLiiVGr~-~~~~~~~~gl~~w~e~peLG~igd~las~~~~-~~svLvvqq~~~~~~~~~~~  772 (786)
                      |++++|++ +++|||+||||+ +.++++|+||+||+||||||+|||+|||+||. ++||||||||+....+-++.
T Consensus       732 ~~~~l~~~-~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~~~~~~~~  805 (832)
T PLN03159        732 TVAAIRSM-DSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGTGPQPDDL  805 (832)
T ss_pred             HHHHHHHh-hccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccCCCCcccC
Confidence            99999999 878999999998 55689999999999999999999999999999 99999999998754444433

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain Back     alignment and domain information
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2985 Predicted permease [General function prediction only] Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PRK10711 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems Back     alignment and domain information
>COG3329 Predicted permease [General function prediction only] Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [] Back     alignment and domain information
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query786
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.0 bits (108), Expect = 5e-05
 Identities = 78/555 (14%), Positives = 146/555 (26%), Gaps = 155/555 (27%)

Query: 324 TNVHKVHNW-----FLAGFVIILTC-----FCK-ILGTLLVSHSYHMP---LQDRLALGV 369
           T  H+         F   FV    C       K IL    + H                 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 370 LMNT-KGILAVVVLNLGWDKKVLHDQEYAVMVIAIVIMTGGVAPI-------ISTMYRSS 421
           L++  + ++   V       + +    Y  ++  I       + +          +Y  +
Sbjct: 71  LLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 422 TRIIKYKGRSIQRAKQGAELRILAC---------VHGVG---------NVLGTINLLE-- 461
               KY   ++ R +   +LR             + GV          +V  +  +    
Sbjct: 124 QVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 462 ------LSNATKESP---------LCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGSS 506
                 L+     SP         L          R   S+ + +   S  +  +R+  S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 507 PS--------DRI--VNIFEAFEN--------RSTGI--SVHPLTAMSPFITMHEDVCNL 546
                       +     + AF          R   +   +   T     +  H      
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 547 AEDKHI---------------AFMILPFH-NQAGNS--NGDTTGSSPFREVNKNILANAP 588
            E K +                    P   +    S  +G  T    ++ VN + L    
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKLTTI- 358

Query: 589 CSVGIFVDKGQGKSDNGRMQHVVMVFIGGPDD----REALALAWRMSANPSVQLTVLRLH 644
             +   ++     ++  +M   + VF   P         L+L W       V + V +LH
Sbjct: 359 --IESSLNV-LEPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 645 SR--YNNNVKEEDIRYSKCIDGRQSQVDAEFVNEFRLQTAGEHN--VNYYEKVVNNREET 700
                    KE     S  I     ++  +  NE+ L     H   V++Y        + 
Sbjct: 413 KYSLVEKQPKES--TIS--IPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDD 463

Query: 701 TGA--------------LREMEL-QKVGLYIVGREV------MASAATADLLGWSECPEI 739
                            L+ +E  +++ L+   R V      +      D   W+    I
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 740 GA-IGDLLVYSDFIR 753
              +  L  Y  +I 
Sbjct: 521 LNTLQQLKFYKPYIC 535

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.89
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.83
3olq_A319 Universal stress protein E; structural genomics, P 99.8
3loq_A294 Universal stress protein; structural genomics, PSI 99.79
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.76
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.75
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.18
3fdx_A143 Putative filament protein / universal stress PROT; 99.18
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.16
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.12
2z08_A137 Universal stress protein family; uncharacterized c 99.1
3dlo_A155 Universal stress protein; unknown function, struct 99.1
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.09
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.06
3tnj_A150 Universal stress protein (USP); structural genomic 99.06
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.05
3fg9_A156 Protein of universal stress protein USPA family; A 99.04
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.02
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.01
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 98.85
3s3t_A146 Nucleotide-binding protein, universal stress PROT 98.84
3dlo_A155 Universal stress protein; unknown function, struct 98.8
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 98.77
1q77_A138 Hypothetical protein AQ_178; structural genomics, 98.76
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 98.75
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 98.71
2z08_A137 Universal stress protein family; uncharacterized c 98.7
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 98.7
3fdx_A143 Putative filament protein / universal stress PROT; 98.7
3tnj_A150 Universal stress protein (USP); structural genomic 98.68
3mt0_A290 Uncharacterized protein PA1789; structural genomic 98.68
3fg9_A156 Protein of universal stress protein USPA family; A 98.66
3olq_A319 Universal stress protein E; structural genomics, P 98.57
3loq_A294 Universal stress protein; structural genomics, PSI 98.57
1q77_A138 Hypothetical protein AQ_178; structural genomics, 98.5
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 98.48
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 98.45
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 98.4
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 98.26
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 97.83
3g40_A294 Na-K-CL cotransporter; alpha/beta fold 10-stranded 96.16
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.89  E-value=3.6e-23  Score=223.82  Aligned_cols=300  Identities=15%  Similarity=0.148  Sum_probs=218.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhccChhHH----Hhcch--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHH
Q 040629           88 TTLETVAYMALDLYIFLIGLEMDVNSI----KSSSK--RELNIAAAGALIPMGVGAGLFFLTARLLHLPTDPSGCLFWGL  161 (786)
Q Consensus        88 ~~l~~l~~igl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~ip~~~~~~~~~~l~~~~~~~~~~~~~l~lg~  161 (786)
                      ...+.+.+-.+.+|||.+|+|+|.+.+    ++.+|  .+...++.|+++|+++...    +.  .   ... .+.....
T Consensus        58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~--~---~~~-~~~~gw~  127 (388)
T 1zcd_A           58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FN--Y---ADP-ITREGWA  127 (388)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GC--C---SST-THHHHTS
T ss_pred             cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hh--c---CCh-hhhhhhH
Confidence            456788899999999999999999877    55444  3788899999999988422    11  1   111 3556666


Q ss_pred             HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 040629          162 TLTVTGFPAVTWILGELKL-LQTDIGRLATSIAMISDVCSWILVAVVLPIRSSPENAPAAIISTIAFSLTCIYAVRPGLE  240 (786)
Q Consensus       162 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~D~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~  240 (786)
                      +.+.|+.+....++..++. .++..++.+++.|++||+.+|+++++...   ++ .....+...+++++..         
T Consensus       128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~~~~l~~~~~~~~~~---------  194 (388)
T 1zcd_A          128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LSMASLGVAAVAIAVL---------  194 (388)
T ss_dssp             SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CCHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-ccHHHHHHHHHHHHHH---------
Confidence            7778999988899998754 56667799999999999999999998853   22 2232222222222111         


Q ss_pred             HHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHHHhCchhHHHHHHHhHhcCC-C----chhHHHHHHHHHHHHHhhHHH
Q 040629          241 WLIRRTSKGNNNAYSDSYLCFFLIGVVICSFVTEVTGTFSIVGAFVFGIIMPD-R----DLGALLFERFADFVSGIMLPL  315 (786)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~il~~~l~~~~~a~~~g~~~~lgafvaGl~~~~-~----~~~~~l~~~l~~~~~~l~~Pl  315 (786)
                      +..+|..      .++...+.++ . +.+.+.++..|+|+.+|+|++|+++|. +    +..++++++++++++.+++|+
T Consensus       195 ~~l~r~~------v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPl  266 (388)
T 1zcd_A          195 AVLNLCG------ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPL  266 (388)
T ss_dssp             HHHHHTT------CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHhc------chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2223321      2223333333 2 244566789999999999999999998 3    467899999999999999999


Q ss_pred             H-HHHhhhhcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhhhHHHHHh
Q 040629          316 F-FAMCGIRTNVHKVH--NWFLAGFVIILTCFCKILGTLLVSHSY----------HMPLQDRLALGVLMNTKGILAVVVL  382 (786)
Q Consensus       316 f-F~~~G~~~d~~~l~--~~~~~~~ii~~~~~~K~i~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~v~l~~~  382 (786)
                      | |+..|+++|.....  .-...+.+++..+++|++|+++.++..          |++|+|...+|++++.+++++++++
T Consensus       267 FaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia  346 (388)
T 1zcd_A          267 FAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA  346 (388)
T ss_dssp             HHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred             HHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence            9 99999999974322  112223555666999999966666655          9999999999999999999999999


Q ss_pred             hccccCCC--CChhhHHHHHHHHHHHHHhHHHHHHhhc
Q 040629          383 NLGWDKKV--LHDQEYAVMVIAIVIMTGGVAPIISTMY  418 (786)
Q Consensus       383 ~~~~~~~~--i~~~~~~~lvl~~vv~t~i~~plv~~l~  418 (786)
                      +.+.+.+.  +.++.+..+++++++++.+.+.++++.+
T Consensus       347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998876  3566788888888887766666665544
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query786
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.3
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.26
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.08
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.07
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.03
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 98.87
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 98.82
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 98.73
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 98.71
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 98.54
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 98.52
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 97.92
d1efpb_246 Small, beta subunit of electron transfer flavoprot 81.02
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.30  E-value=3e-12  Score=120.77  Aligned_cols=145  Identities=14%  Similarity=0.168  Sum_probs=97.0

Q ss_pred             ceEEEEEcCCCchhhHHHHHhhhcCCCCCCcEEEEEEeecccCCCchhhhhcccCCCcccccCCC--------CCcchHH
Q 040629          441 LRILACVHGVGNVLGTINLLELSNATKESPLCIFALHLVELRGSASAVLIVHTSSKNSAYKRVGS--------SPSDRIV  512 (786)
Q Consensus       441 ~riLv~v~~~~~~~~li~L~~~~~~~~~~~~~v~~lhlvel~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~  512 (786)
                      -|||+|+|.++....+++.+..++..  .+..++++|+++.................... ....        ...++..
T Consensus         4 ~~ILvavD~s~~s~~al~~a~~la~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           4 KKILYPTDFSETAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSLLLGVAGLN-KSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC------------------CHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHHHHHh--cCCEEEEEEecccccccccccccccccccccc-hhHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999855  66799999999875433221111100000000 0000        0012222


Q ss_pred             HHHHHhHhcC--CceEEEEeEEecCCCChHHHHHHHHhhcCccEEEEccccCCCCCCCCCCCCcchHHHHHHHhccCCCc
Q 040629          513 NIFEAFENRS--TGISVHPLTAMSPFITMHEDVCNLAEDKHIAFMILPFHNQAGNSNGDTTGSSPFREVNKNILANAPCS  590 (786)
Q Consensus       513 ~af~~~~~~~--~~v~v~~~t~vs~~~~~~~dI~~~A~e~~adlIIlp~h~~~~~~G~~~~~~~~~~~vn~~Vl~~ApCs  590 (786)
                      +.++.+.+..  .++.++.....+   +..+.||++|++.++|+||||.|++      ....+..+|++.++|++++|||
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~G---~~~~~I~~~a~~~~~dliV~G~~~~------~~~~~~~~GS~a~~vl~~s~~p  151 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGK------TNLKEILLGSVTENVIKKSNKP  151 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCS------SCCTTCSSCHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEec---cHHHHHhhhhhccccceEEeccCCC------CcccccccCcHHHHHHhcCCCC
Confidence            2333332211  678888888876   8999999999999999999999954      3445566899999999999999


Q ss_pred             eEEEecC
Q 040629          591 VGIFVDK  597 (786)
Q Consensus       591 VgIlvdr  597 (786)
                      |.|+..+
T Consensus       152 VlvV~~~  158 (160)
T d1mjha_         152 VLVVKRK  158 (160)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9876544
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure