Citrus Sinensis ID: 040645

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MVLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
ccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHccHHHccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccc
ccHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHEcccccc
mvltkkwdiglidTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLykgyipsfdeyKSVALRSIGFLPVAVASFVdlgdfiatkDNFECILKNAKSVKATQTIVRFMDDiagykfeqkrghipsavecyknqhgvseEEAVKELLLEVADSWKDINEellnpttaslpTLQRVLYFArsghfiyddghdrytHSLMMKRQVALLLTEPLAI
mvltkkwdiglidTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKnaksvkatqTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELlnpttaslpTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
MVLTKKWDIGLIDTLPEYMKFIFKALLDIYreaeeelakerrSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSeeeavkelllevaDSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
**LTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLT*****
MVLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
MVLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
MVLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLTKKWDIGLIDTLPEYMKFIxxxxxxxxxxxxxxxxxxxxxYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.978 0.407 0.903 1e-121
Q6Q3H3557 (-)-germacrene D synthase no no 0.978 0.409 0.467 4e-53
O23945556 (-)-alpha-pinene synthase N/A no 0.969 0.406 0.449 2e-52
Q6Q3H2556 Valencene synthase OS=Vit no no 0.896 0.375 0.478 5e-50
B5A435559 Sesquiterpene synthase OS N/A no 0.974 0.406 0.404 5e-49
F6M8H7562 Probable sesquiterpene sy N/A no 0.974 0.403 0.408 7e-49
E3W207559 Sesquiterpene synthase OS N/A no 0.974 0.406 0.408 2e-48
F6M8H5562 Probable sesquiterpene sy N/A no 0.974 0.403 0.404 8e-48
F6M8H4559 Probable sesquiterpene sy N/A no 0.974 0.406 0.395 1e-47
F6M8H6562 Probable sesquiterpene sy N/A no 0.974 0.403 0.395 1e-46
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/228 (90%), Positives = 215/228 (94%)

Query: 6   KWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAK 65
           +WDIGLIDTLPEYMKFI KALLDIYREAEEELAKE RSYGI YAKQ MQELI+LYFTEAK
Sbjct: 333 RWDIGLIDTLPEYMKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAK 392

Query: 66  WLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTI 125
           WLYKGY+P+FDEYKSVALRSIG   +AVASFVDLGDFIATKDNFECILKNAKS+KAT+TI
Sbjct: 393 WLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETI 452

Query: 126 VRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPT 185
            R MDDIAGYKFEQKRGH PSAVECYKNQHGVSEEEAVKELLLEVA+SWKDINEELLNPT
Sbjct: 453 GRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINEELLNPT 512

Query: 186 TASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 233
           T  LP LQR+LYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
Sbjct: 513 TVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 560
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
75250254 560 RecName: Full=(E)-beta-farnesene synthas 0.978 0.407 0.903 1e-119
300079902 560 (E)-beta-farnesene synthase [Citrus reti 0.978 0.407 0.899 1e-118
313585892 551 Tps2-1 [Clausena lansium] 0.974 0.411 0.655 1e-81
33316389 548 valencene synthase [Citrus sinensis] 0.939 0.399 0.5 1e-56
261343328 548 terpene synthase 1 [Citrus sinensis] 0.939 0.399 0.5 2e-56
19880625 548 putative terpene synthase [Citrus x para 0.939 0.399 0.495 7e-56
60266878 565 germacrene-D synthase [Actinidia delicio 0.896 0.369 0.502 1e-54
225470617 560 PREDICTED: (-)-germacrene D synthase [Vi 0.974 0.405 0.469 1e-54
224115384 569 predicted protein [Populus trichocarpa] 0.974 0.398 0.5 2e-54
41058926 561 (-)-germacrene D synthase [Populus trich 0.974 0.404 0.443 4e-54
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/228 (90%), Positives = 215/228 (94%)

Query: 6   KWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAK 65
           +WDIGLIDTLPEYMKFI KALLDIYREAEEELAKE RSYGI YAKQ MQELI+LYFTEAK
Sbjct: 333 RWDIGLIDTLPEYMKFIVKALLDIYREAEEELAKEGRSYGIPYAKQMMQELIILYFTEAK 392

Query: 66  WLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTI 125
           WLYKGY+P+FDEYKSVALRSIG   +AVASFVDLGDFIATKDNFECILKNAKS+KAT+TI
Sbjct: 393 WLYKGYVPTFDEYKSVALRSIGLRTLAVASFVDLGDFIATKDNFECILKNAKSLKATETI 452

Query: 126 VRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPT 185
            R MDDIAGYKFEQKRGH PSAVECYKNQHGVSEEEAVKELLLEVA+SWKDINEELLNPT
Sbjct: 453 GRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSEEEAVKELLLEVANSWKDINEELLNPT 512

Query: 186 TASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 233
           T  LP LQR+LYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI
Sbjct: 513 TVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 560

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|60266878|gb|AAX16121.1| germacrene-D synthase [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|225470617|ref|XP_002263580.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115384|ref|XP_002317018.1| predicted protein [Populus trichocarpa] gi|222860083|gb|EEE97630.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.974 0.406 0.365 3.6e-41
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.952 0.4 0.395 9.9e-39
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.965 0.412 0.356 2.7e-36
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.969 0.395 0.372 3.9e-35
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.892 0.375 0.368 1e-34
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.974 0.401 0.339 3e-34
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.965 0.398 0.337 1.5e-33
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.974 0.412 0.343 1.3e-32
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.931 0.396 0.347 1.4e-30
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.978 0.411 0.334 1.5e-29
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/230 (36%), Positives = 135/230 (58%)

Query:     5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
             ++WD+G +D LPEYMK  +K++LD+Y             + + YAK+ M++L+  Y  EA
Sbjct:   332 QRWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMDNQGSLFRMHYAKEVMKKLVEGYMDEA 391

Query:    65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
             KW ++ Y+P+F+EY  VAL + G+  +   S++ +G+ IA+K+ F+ +  +   ++A+++
Sbjct:   392 KWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGE-IASKEAFDWLFSHPPVIEASES 450

Query:   125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
             + R MDD+  +KFEQ+RGH+ S +ECY  Q+GV+              +WKDINEE L P
Sbjct:   451 VCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAHDEFRKQLVKAWKDINEECLRP 510

Query:   185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
                  P L R+L   R    IY +  D YTH    MK  +A LL +P+ +
Sbjct:   511 YRVPKPLLMRILNLTRVIDVIYKN-EDGYTHVKKAMKDNIASLLIDPMIV 559
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94JS8FARS_CITJU4, ., 2, ., 3, ., 4, 70.90350.97850.4071N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 5e-83
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 2e-66
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-54
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 4e-20
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 4e-10
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-08
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  256 bits (657), Expect = 5e-83
 Identities = 104/228 (45%), Positives = 146/228 (64%), Gaps = 4/228 (1%)

Query: 5   KKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEA 64
           ++WDI  ID LPEYMK +FKALL+   E EEEL KE  SY + Y K+  ++L+  Y  EA
Sbjct: 317 ERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEA 376

Query: 65  KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
           KW ++GY+P+F+EY   AL SIG  P+ + SF+ +GD I T++ FE +    K V+A+ T
Sbjct: 377 KWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGD-ILTEEAFEWLESRPKLVRASST 435

Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNP 184
           I R M+DIA Y+ E KRG + S++ECY  ++GVSEEEA +E+   + D+WK++NEE L P
Sbjct: 436 IGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKP 495

Query: 185 TTA-SLPTLQRVLYFARSGHFIYDDGHDRYTHSL-MMKRQVALLLTEP 230
           ++    P  QR L  AR     Y +G D +TH    +K  +  LL EP
Sbjct: 496 SSDVPRPIKQRFLNLARVIDVFYKEG-DGFTHPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PLN0215096 terpene synthase/cyclase family protein 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 99.97
PLN02592800 ent-copalyl diphosphate synthase 99.97
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.95
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.75
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.6
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.1
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 95.91
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 94.19
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 93.33
PLN02890422 geranyl diphosphate synthase 92.28
PLN02857416 octaprenyl-diphosphate synthase 92.27
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 91.1
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 89.29
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 88.72
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 88.6
CHL00151323 preA prenyl transferase; Reviewed 84.6
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 82.78
PRK10888323 octaprenyl diphosphate synthase; Provisional 80.43
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=7.8e-61  Score=453.06  Aligned_cols=227  Identities=45%  Similarity=0.776  Sum_probs=221.9

Q ss_pred             ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645            2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV   81 (233)
Q Consensus         2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~   81 (233)
                      +||+|||.+++++||+|||+||.+++++++|++.++.+++++++..|++++|+++++||++||+|+++||+||++|||++
T Consensus       314 ~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~  393 (542)
T cd00684         314 EAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMEN  393 (542)
T ss_pred             HHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhh
Confidence            68999999999999999999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645           82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE  161 (233)
Q Consensus        82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee  161 (233)
                      |.+|+|++++++++++++|+. +|+++++|+...|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+
T Consensus       394 ~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~ee  472 (542)
T cd00684         394 ALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEE  472 (542)
T ss_pred             hhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHH
Confidence            999999999999999999999 9999999987779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccc
Q 040645          162 AVKELLLEVADSWKDINEELLNP-TTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEP  230 (233)
Q Consensus       162 A~~~i~~~i~~~~k~ln~e~l~~-~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~p  230 (233)
                      |+++++++++++||++|++++++ +++|++|+++++|++|+++++|+++ ||||.|+. +|++|++||++|
T Consensus       473 A~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~-D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         473 AREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEG-DGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCC
Confidence            99999999999999999999998 7899999999999999999999999 99999966 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>CHL00151 preA prenyl transferase; Reviewed Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 9e-41
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 5e-31
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 5e-31
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-31
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-31
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 5e-31
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 5e-31
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-31
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-30
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-30
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 4e-20
2j5c_A569 Rational Conversion Of Substrate And Product Specif 9e-20
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 5e-18
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-17
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-15
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 1e-14
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 3e-10
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (412), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 126/230 (54%), Gaps = 3/230 (1%)
Query: 5   KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
           ++WDI  ID +PEYMK  +KALLD+Y             Y + YAK  M  L   Y  EA
Sbjct: 327 ERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEA 386
Query: 65  KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
           KW  + Y PSF+E+K+ AL + G+  +A+ SFV +GD I T + F+    + K ++A+  
Sbjct: 387 KWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGD-IVTPETFKWAASDPKIIQASTI 445
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
           I RFMDD+A +KF+ +R    SA+ECY  ++GV+              +WKD+N+E L P
Sbjct: 446 ICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP 505
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
           T      L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct: 506 TEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 2e-65
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 7e-65
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 3e-64
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-61
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 3e-61
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-60
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 2e-59
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-58
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-57
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 4e-21
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 6e-21
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 9e-17
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 1e-08
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 2e-05
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-05
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
 Score =  210 bits (536), Expect = 2e-65
 Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 3/230 (1%)

Query: 5   KKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEA 64
           ++WDI  ID LP+YMK  +KA+LD+Y++ E+EL+   RS+ + +A + M+E++  Y  E+
Sbjct: 323 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVES 382

Query: 65  KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
            W  +GY P   EY S AL +  +  +A  S++ +    AT+ +FE + KN K ++A+  
Sbjct: 383 TWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGMKS--ATEQDFEWLSKNPKILEASVI 440

Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNP 184
           I R +DD A Y+ E+ RG I + +EC    +G+S +EA+ +       +WKDINE LL P
Sbjct: 441 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 500

Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTHS-LMMKRQVALLLTEPLAI 233
           T  S   L  +L  AR     Y    D YTH   ++K  +  LL + + I
Sbjct: 501 TPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 99.93
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.42
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 94.76
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 94.37
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 92.51
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 92.37
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 92.02
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 91.48
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 91.19
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 91.12
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 91.09
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 90.48
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 90.27
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 89.51
3lsn_A304 Geranyltranstransferase; structural genomics, prot 89.3
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 88.48
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 88.43
4f62_A317 Geranyltranstransferase; enzyme function initiativ 88.37
3pde_A309 Farnesyl-diphosphate synthase; isoprenyl diphospha 87.71
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 87.52
3uca_A324 Geranyltranstransferase; isoprenoid synthesis, iso 87.25
1rqj_A299 Geranyltranstransferase; bisphosphonate, isoprenyl 86.13
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 85.91
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 85.69
3npk_A291 Geranyltranstransferase; isoprene biosynthesis, SG 85.57
1wmw_A330 Geranylgeranyl diphosphate synthetase; GGPP, preny 84.39
3llw_A311 Geranyltranstransferase (ISPA); structural genomic 84.31
3nf2_A352 Putative polyprenyl synthetase; isoprenyl diphosph 83.98
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 82.22
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=7e-72  Score=524.53  Aligned_cols=230  Identities=40%  Similarity=0.692  Sum_probs=214.5

Q ss_pred             ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645            2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV   81 (233)
Q Consensus         2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~   81 (233)
                      +||+|||++++++||+|||+||.+|++++||+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+|
T Consensus       324 ~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~n  403 (554)
T 3g4d_A          324 NAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKAN  403 (554)
T ss_dssp             HHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhc
Confidence            58999999999999999999999999999999999889999899999999999999999999999999999999999999


Q ss_pred             hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645           82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE  161 (233)
Q Consensus        82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee  161 (233)
                      |.+|+|++++++++++++|+. +|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|||+|+|+
T Consensus       404 a~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEe  482 (554)
T 3g4d_A          404 ALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE  482 (554)
T ss_dssp             HGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHH
T ss_pred             cceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHH
Confidence            999999999999999999999 9999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 040645          162 AVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI  233 (233)
Q Consensus       162 A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~  233 (233)
                      |+++++++++++||+||+++++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++||++
T Consensus       483 A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          483 AYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999998999999999999999999999999 99999965 999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Back     alignment and structure
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Back     alignment and structure
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Back     alignment and structure
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Back     alignment and structure
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 3e-74
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 9e-71
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 2e-31
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 6e-23
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  226 bits (577), Expect = 3e-74
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 2/227 (0%)

Query: 7   WDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKW 66
           WD   I  LP YM+  +  + +   +A  ++ KE   + + Y ++++ +L+  YF EAKW
Sbjct: 103 WDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKW 162

Query: 67  LYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIV 126
            + GY PS DEY ++A  S+    +   ++    +        + + +    +     I+
Sbjct: 163 YHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIIL 222

Query: 127 RFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPTT 186
           R  DD+    FE  RG +P  ++CY  +   SEEEAV+ +   + ++WKD+N  +     
Sbjct: 223 RLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYP 282

Query: 187 ASLPTLQRVLYFARSGHFIYDDGHDRYTHS-LMMKRQVALLLTEPLA 232
                +       R   FIY  G D +          +A LL EP A
Sbjct: 283 FPDGMVAGAANIGRVAQFIYLHG-DGFGVQHSKTYEHIAGLLFEPYA 328
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.96
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.89
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.28
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 90.92
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 86.94
d1rqja_299 Farnesyl diphosphate synthase (geranyltranstransfe 86.25
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.9e-70  Score=486.21  Aligned_cols=230  Identities=37%  Similarity=0.617  Sum_probs=214.4

Q ss_pred             ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645            2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV   81 (233)
Q Consensus         2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~   81 (233)
                      +||+|||.+++++||+|||+||++++++++|+++++.++||+++++|++++|++++++|++||+|+++||+||+||||+|
T Consensus        98 ~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA~W~~~g~vPt~eEYl~~  177 (328)
T d5easa2          98 DAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSN  177 (328)
T ss_dssp             HHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHhhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645           82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE  161 (233)
Q Consensus        82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee  161 (233)
                      |.+|+|++++++++++++|.  ++++.++|+.++|+|+++++.|+||+|||+|+++|+++|+++|+|.|||+|||+|+||
T Consensus       178 ~~~s~~~~~l~~~~~~~~g~--~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~s~I~cym~e~g~t~Ee  255 (328)
T d5easa2         178 ALATTTYYYLATTSYLGMKS--ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKE  255 (328)
T ss_dssp             HTGGGCHHHHHHHHHHTCTT--CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHTCCHHH
T ss_pred             eeeeehHHHHHHHHHHhCCC--CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCCeeEEEEecCCCCCHHH
Confidence            99999999999999999986  5678899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 040645          162 AVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI  233 (233)
Q Consensus       162 A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~  233 (233)
                      |+++++++|+++||+||+++++++++|++|+++++|+||+++++|+++.||||.|+. +|++|++||++|||+
T Consensus       256 A~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~~ll~epi~~  328 (328)
T d5easa2         256 AMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI  328 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHHhccCCcC
Confidence            999999999999999999999999999999999999999999999976599999986 999999999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure