Citrus Sinensis ID: 040649
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | 2.2.26 [Sep-21-2011] | |||||||
| P54120 | 353 | Protein AIG1 OS=Arabidops | no | no | 0.592 | 0.623 | 0.527 | 8e-60 | |
| O81025 | 463 | Putative protein PHLOEM P | no | no | 0.781 | 0.626 | 0.420 | 9e-60 | |
| Q8K3K9 | 310 | GTPase IMAP family member | yes | no | 0.522 | 0.625 | 0.415 | 3e-35 | |
| Q9NUV9 | 329 | GTPase IMAP family member | yes | no | 0.668 | 0.753 | 0.354 | 3e-35 | |
| Q99JY3 | 219 | GTPase IMAP family member | no | no | 0.485 | 0.821 | 0.387 | 3e-30 | |
| Q8WWP7 | 306 | GTPase IMAP family member | no | no | 0.609 | 0.738 | 0.329 | 4e-28 | |
| Q8NHV1 | 300 | GTPase IMAP family member | no | no | 0.549 | 0.68 | 0.344 | 5e-28 | |
| Q8BWF2 | 308 | GTPase IMAP family member | no | no | 0.630 | 0.759 | 0.320 | 1e-27 | |
| Q96F15 | 307 | GTPase IMAP family member | no | no | 0.539 | 0.651 | 0.312 | 7e-27 | |
| P70224 | 277 | GTPase IMAP family member | no | no | 0.525 | 0.703 | 0.338 | 3e-26 |
| >sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 149/220 (67%)
Query: 9 DWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG 68
D S + +VL+GRTGNGKSATGNSI+ + FK+ SS +T C V +G
Sbjct: 32 DEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91
Query: 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRL 128
++NVIDTPGLFD S +E++ KEI KC+ +A G+HAVLLV SVR+R SQEEE + L
Sbjct: 92 PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151
Query: 129 QTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTK 188
Q LFG KI DY+IVVFTGGD LED+ TLEDYLG P LK +L LC R +LFDNKTK
Sbjct: 152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211
Query: 189 YEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVES 228
+ K+T+QV +LL L++ V +N PYT+E + +K E+
Sbjct: 212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIKEEN 251
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 191/307 (62%), Gaps = 17/307 (5%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG + FK+ + +T CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139
DS + +S EI C+ MA++GIHAVLLV S R R S+EEE+ V+ LQ +FG +I DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199
IVVFTGGDDLE++++TL+DY CP+ L ++L+LC R VLFDNK+K E K+ EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 200 LLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQ 259
LL+ V V + GG PYT + ++K E+ E+ +E+ K A++A+
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEEND--------ERLREEERVIESKNRAEAELAE 237
Query: 260 RKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKETITRVEQQLAEEQA 319
+ N + K + +E A+ + E+NE +++E +K R E +LA
Sbjct: 238 MQQNLLMEKEKLQMEEAKNKQLIAQAEANE----KLMEQERAK-----NRAETELAAVMV 288
Query: 320 TRLKEEE 326
+L+ EE
Sbjct: 289 EKLQMEE 295
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 129/200 (64%), Gaps = 6/200 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILGR+AF + + +ITK CE K + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91
Query: 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI 141
+ KEI +C+ + G HA+LLV + ++ EE A +L ++F KK +MI
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARRFMI 150
Query: 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLL 201
++ T DDLED + + +YL P+ L+E++ NR+ LF+NK A++ EQ +QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYLE-TAPEVLQELIYEFRNRYCLFNNKAS-GAEQEEQKRQLL 206
Query: 202 SLVNAVNVKNGGQPYTNECF 221
+LV ++ +NGG+ +TN+ +
Sbjct: 207 TLVQSMVRENGGKYFTNKMY 226
|
May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Rattus norvegicus (taxid: 10116) |
| >sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 158/262 (60%), Gaps = 14/262 (5%)
Query: 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDT 76
N + +VL+G+TG GKSATGNSILGR+ F + + +ITK CE +++ K+ ++V V+DT
Sbjct: 28 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDT 86
Query: 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKI 136
PG+FD+ + SKEI +CI + G HA+LLV + R+++EE A ++ +FG++
Sbjct: 87 PGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGERA 145
Query: 137 FDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQ 196
+MI++FT DDL D L DYL E P+ +++++ + +R+ +NK A++ Q
Sbjct: 146 RSFMILIFTRKDDLGDT--NLHDYL-REAPEDIQDLMDIFGDRYCALNNKAT-GAEQEAQ 201
Query: 197 VQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQ 256
QLL L+ V +N YTN + + E ++++ T + Q+L + + R E A+
Sbjct: 202 RAQLLGLIQRVVRENKEGCYTNRMYQ--RAEEEIQKQTQAM-QELHRVELER----EKAR 254
Query: 257 IAQRKSNDEIRKLRENLESARR 278
I + + ++IRKL + +E +R
Sbjct: 255 I-REEYEEKIRKLEDKVEQEKR 275
|
May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium. Homo sapiens (taxid: 9606) |
| >sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 116/186 (62%), Gaps = 6/186 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILG + F + + +ITK CE + + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91
Query: 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI 141
+ +EI + + + G HA+LLV + R++ EE A ++ +FGK+ +MI
Sbjct: 92 TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150
Query: 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLL 201
++ T DDLED + + +YL + PK +E++ NR+ LF+N+ A++ EQ QLL
Sbjct: 151 LLLTRKDDLEDTD--IHEYLE-KAPKFFQEVMHEFQNRYCLFNNRAS-GAEKEEQKMQLL 206
Query: 202 SLVNAV 207
+LV ++
Sbjct: 207 TLVQSM 212
|
Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis. Mus musculus (taxid: 10090) |
| >sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 17/243 (6%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG+R F + G++++T+ C + D V V+DTP +
Sbjct: 28 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86
Query: 80 FDSS-AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFD 138
F S ++++ +E C ++ G HA+LLV + RF+ +++ AV +++ +FG+ +
Sbjct: 87 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 145
Query: 139 YMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQ 198
+M++VFT +DL +L DY+ + L+E++ C R FDN+ ++ QV+
Sbjct: 146 WMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGGRVCAFDNRATGR-EQEAQVE 202
Query: 199 QLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIA 258
QLL +V + +++ G Y+NE + +L Q W E+ R E VA
Sbjct: 203 QLLGMVEGLVLEHKGAHYSNEVY-------ELAQVLRW----AGPEERLRRVAERVAARV 251
Query: 259 QRK 261
QR+
Sbjct: 252 QRR 254
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Homo sapiens (taxid: 9606) |
| >sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 128/212 (60%), Gaps = 8/212 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+G+TG+GKSAT N+ILG F + + A+TK C+ K + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69
Query: 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI 141
+ + KEI++CI + G HA++LV + R+++EE+ V ++ +FGK +M+
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128
Query: 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKY-EAKRTEQVQQL 200
++FT ++LE ++ D++ + LK I++ C NR F N K +A++ QVQ+L
Sbjct: 129 ILFTRKEELEG--QSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185
Query: 201 LSLVNAVNVKNGGQPYTNECFAELKVESKLKQ 232
+ L+ + N G ++++ + + E +LKQ
Sbjct: 186 VELIEKMVQCNEGAYFSDDIYKD--TEERLKQ 215
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 149/262 (56%), Gaps = 28/262 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNSIL R AF++ ++T+T + +T +G+ + V+DTP +F+
Sbjct: 29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87
Query: 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI 141
S A+++ + K+I C + G H +LLV + RF+ E+ AV ++ +FG + +MI
Sbjct: 88 SKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQL-GRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLL 201
V+FT +DLE EK+LE+++ + L+ + Q C R+ F+N+ E ++ Q+ +L+
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQG-QLAELM 203
Query: 202 SLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQRK 261
+LV + + G ++N+ F L E+ L++ G V Q A R
Sbjct: 204 ALVRRLEQECEGSFHSNDLF--LHAEALLRE------------------GYSVHQEAYRC 243
Query: 262 SNDEIRKLRENLESARREIEDQ 283
+ K+R+ +E RRE+E+Q
Sbjct: 244 Y---LAKVRQEVEKQRRELEEQ 262
|
Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence. Mus musculus (taxid: 10090) |
| >sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 128/205 (62%), Gaps = 5/205 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG GKSATGNSILG+ F++ + ++T+TC++KT +G+ V V+DTP +F+
Sbjct: 30 IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTW-NGRKVLVVDTPSIFE 88
Query: 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI 141
S A+++ + K I C ++ G H +LLV + RF+ ++ A+ +++ +FG +++
Sbjct: 89 SQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVAIRKVKEVFGTGAMRHVV 147
Query: 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLL 201
++FT +DL + L+DY+ LK++++ C+ R+ F+N E +R +Q +LL
Sbjct: 148 ILFTHKEDL--GGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQA-ELL 204
Query: 202 SLVNAVNVKNGGQPYTNECFAELKV 226
+++ + + G ++N+ F + ++
Sbjct: 205 AVIERLGREREGSFHSNDLFLDAQL 229
|
Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence. Homo sapiens (taxid: 9606) |
| >sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 120/201 (59%), Gaps = 6/201 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+GRTG GKSATGNSILG++ F + G+ +T++C + + + Q V V+DTP +F
Sbjct: 6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQ-VEVVDTPDIFS 64
Query: 82 SS-AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140
S ++ E A+C ++ G HA+LLV + RF+ ++ A+ ++ LFGK++
Sbjct: 65 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQL-GRFTMQDSQALAAVKRLFGKQVMART 123
Query: 141 IVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQL 200
+VVFT +DL + +L+DY+ + L++++ C R +N+ ++R Q +QL
Sbjct: 124 VVVFTRQEDLAGD--SLQDYVHCTDNRALRDLVAECGGRVCALNNRAT-GSEREAQAEQL 180
Query: 201 LSLVNAVNVKNGGQPYTNECF 221
L +V + ++GG Y+NE +
Sbjct: 181 LGMVACLVREHGGAHYSNEVY 201
|
May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| 225460273 | 340 | PREDICTED: protein AIG1 [Vitis vinifera] | 0.881 | 0.961 | 0.622 | 1e-118 | |
| 296089429 | 345 | unnamed protein product [Vitis vinifera] | 0.881 | 0.947 | 0.622 | 1e-118 | |
| 255539412 | 339 | aig1, putative [Ricinus communis] gi|223 | 0.760 | 0.831 | 0.639 | 1e-112 | |
| 224146305 | 335 | predicted protein [Populus trichocarpa] | 0.762 | 0.844 | 0.589 | 1e-103 | |
| 363814318 | 336 | uncharacterized protein LOC100807910 [Gl | 0.754 | 0.833 | 0.6 | 1e-103 | |
| 356526433 | 350 | PREDICTED: protein AIG1-like [Glycine ma | 0.741 | 0.785 | 0.606 | 1e-103 | |
| 449464872 | 341 | PREDICTED: protein AIG1-like [Cucumis sa | 0.776 | 0.844 | 0.593 | 2e-97 | |
| 4097585 | 344 | NTGP4, partial [Nicotiana tabacum] | 0.754 | 0.813 | 0.562 | 4e-97 | |
| 388500386 | 335 | unknown [Lotus japonicus] | 0.752 | 0.832 | 0.553 | 5e-94 | |
| 356515323 | 340 | PREDICTED: protein AIG1-like [Glycine ma | 0.857 | 0.935 | 0.518 | 9e-92 |
| >gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/355 (62%), Positives = 271/355 (76%), Gaps = 28/355 (7%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG I+ +W+ T+ S+G RT+VL+GRTGNGKSATGNSILGR++FK+ A SS +T TCE+
Sbjct: 1 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+ T+L+DGQ+VNVIDTPGLFD SAES++V KEI KCI +AKDG+HAVL+VFSVR+RFS+E
Sbjct: 61 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
EEAA+H LQTLFG KI DYMIVVFTGGD+LEDN++TLEDYLG ECP+PLK+ L LC NR
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQ 240
VLFDNKTK EAK+ EQVQ+LLSLVN+V ++NGGQPYT+E F ELK
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELK--------------- 225
Query: 241 LAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVE 300
Q R + EEV + + S EI L+E QMH+S E+++KRI EMVE
Sbjct: 226 -KGAQKLRDQTEEVDSL-EGYSKREILVLKE-----------QMHKSYEEQLKRITEMVE 272
Query: 301 SKLKETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETED 355
KL+ET ++E+QLAEEQA RLK EE+AQ AQ SN+EI KLRENLER QRETE+
Sbjct: 273 VKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENLERAQRETEE 327
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/355 (62%), Positives = 271/355 (76%), Gaps = 28/355 (7%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG I+ +W+ T+ S+G RT+VL+GRTGNGKSATGNSILGR++FK+ A SS +T TCE+
Sbjct: 6 MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+ T+L+DGQ+VNVIDTPGLFD SAES++V KEI KCI +AKDG+HAVL+VFSVR+RFS+E
Sbjct: 66 QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
EEAA+H LQTLFG KI DYMIVVFTGGD+LEDN++TLEDYLG ECP+PLK+ L LC NR
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQ 240
VLFDNKTK EAK+ EQVQ+LLSLVN+V ++NGGQPYT+E F ELK
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELK--------------- 230
Query: 241 LAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVE 300
Q R + EEV + + S EI L+E QMH+S E+++KRI EMVE
Sbjct: 231 -KGAQKLRDQTEEVDSL-EGYSKREILVLKE-----------QMHKSYEEQLKRITEMVE 277
Query: 301 SKLKETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETED 355
KL+ET ++E+QLAEEQA RLK EE+AQ AQ SN+EI KLRENLER QRETE+
Sbjct: 278 VKLRETTMKLERQLAEEQAARLKAEEIAQRAQLASNDEIRKLRENLERAQRETEE 332
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/327 (63%), Positives = 241/327 (73%), Gaps = 45/327 (13%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG I+ DW+ TS SNG RTVVL+GRTGNGKSATGNS+LGR+AFK+ A SS +T TCE+
Sbjct: 1 MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+ TV+ DGQV+NV+DTPGLFD SAESE+V KEI KCI MAKDGIHAVL+VFSVR+RFSQE
Sbjct: 61 QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
EEAA+ LQTLFG KIFDYMIVVFTGGD+LEDN++TLEDYLG ECP+PL+EIL LC NR
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK--------------- 225
VLFDNKTK E KR EQV QLLSLVN V +NGGQPYT+E F ELK
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELKARAIKLRDQQEEVDS 240
Query: 226 ------------------------------VESKLKQTTIWLEQQLAKEQAARLKGEEVA 255
VE KL++TT LEQQLA+EQAARLK EE A
Sbjct: 241 LKGYSKGEILELKEQMHRSYEEQLKRITEMVELKLRETTNRLEQQLAEEQAARLKAEEKA 300
Query: 256 QIAQRKSNDEIRKLRENLESARREIED 282
Q+AQ KSNDEIR+LRENLE A++E ++
Sbjct: 301 QLAQMKSNDEIRQLRENLERAQKETQE 327
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/329 (58%), Positives = 236/329 (71%), Gaps = 46/329 (13%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG ++ DW+ S SNG RT+VL+GRTGNGKSATGNSILGR+AFK+ A SS +T +CE+
Sbjct: 1 MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+ TVL+DGQ++NVIDTPGLFD SA SE+V +EI KCI MAKDGIHAVL+VFSVR+RFSQE
Sbjct: 61 QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
EEAA+ LQTLFG KI DYMIVVFTGGD+LEDN++TLEDYLG ECP+PLKE+L LC+NR
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK--------------- 225
VLF+NKTK K EQVQ+LLSLVN V +NGGQPY++E FAE++
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQKGEMNFRGQQEEVDS 240
Query: 226 -------------------------------VESKLKQTTIWLEQQLAKEQAARLKGEEV 254
VE KLK+ T LE++LA+EQAARL+ EE
Sbjct: 241 LKGNFSIGEISELQEQMKRQYEDQLKRVTDMVEMKLKEATGNLERRLAEEQAARLRAEES 300
Query: 255 AQIAQRKSNDEIRKLRENLESARREIEDQ 283
AQ+ QRKSN+EIR LRE LE A E+ ++
Sbjct: 301 AQLEQRKSNEEIRMLRERLEKAHEELRNK 329
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/325 (60%), Positives = 231/325 (71%), Gaps = 45/325 (13%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG I DW+ TSSSN RTVVL+GRTGNGKSATGN+ILGR+ FK+ A SSA++ +CE+
Sbjct: 1 MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+TT L DGQ+VNVIDTPGLFD S SE+V KEI KCI +AKDGIHAV++VFSVR+RF++E
Sbjct: 61 QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
EE A+ LQTLFG KI DYMIVVFTGGD+LE+N +TLEDYLG ECP+PLKEIL LCDNR
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK--------------- 225
VLFDNKTK E KR QVQQLLS VN V +NGG+PYT+E F +LK
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDS 240
Query: 226 ------------------------------VESKLKQTTIWLEQQLAKEQAARLKGEEVA 255
VESKL++ T+ LEQQL +EQAARLK EE A
Sbjct: 241 LKGYSKGEILKFKKQMQQTYDDQLKRITEIVESKLREATMRLEQQLVEEQAARLKAEENA 300
Query: 256 QIAQRKSNDEIRKLRENLESARREI 280
+AQ +S+DEIRKLRE+LE A E+
Sbjct: 301 MLAQMRSDDEIRKLREHLEKAHEEL 325
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/320 (60%), Positives = 234/320 (73%), Gaps = 45/320 (14%)
Query: 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL 65
I+ DW+ TSSSN RTVVL+GRTGNGKSATGN+ILGR+AFK+ A SSA++ +CE+KTT L
Sbjct: 20 IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79
Query: 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAV 125
+GQ+VNVIDTPGLFD SA SE+V KEI KCI +AKDGIHAV++VFSVR+RF++EEE A+
Sbjct: 80 NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139
Query: 126 HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185
LQTLFG KI DYMIVVFTGGD+LE+N++TLEDYLG ECP+PLKEIL LC+NR VLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199
Query: 186 KTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK-------------------- 225
KTK E KR QVQQLLS VN V +NGG+PYT+E F +LK
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLKKGAMELHNQQREVDSLKGYS 259
Query: 226 -------------------------VESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQR 260
VESKL++ T+ LE+QLA+EQAARLK EE A +AQ
Sbjct: 260 KGEILEFKKQMQQTYDEQLKRITEMVESKLREATMRLEEQLAEEQAARLKAEENAMLAQM 319
Query: 261 KSNDEIRKLRENLESARREI 280
+S+DEIRKLRE+LE A E+
Sbjct: 320 RSDDEIRKLREHLEKAHEEL 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/337 (59%), Positives = 239/337 (70%), Gaps = 49/337 (14%)
Query: 1 MGERVINGDWKP--TSSSNGE--RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITK 56
MG I DW+ TS +NG RTVVL+GRTGNGKSATGNSILGR+AFK+ A SS +T
Sbjct: 1 MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60
Query: 57 TCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR 116
T E++TTVL DGQ ++VIDTPG+FD SA S++V KEI KCI MAKDGIHAVL+VFSVR+R
Sbjct: 61 TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120
Query: 117 FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176
FS EEEAA+ LQTLFG KI +YMIVVFTGGD+LE+NE+TLEDYLG CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180
Query: 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK----------- 225
NR VLFDNKTK E ++ QVQQLLSLVN + ++NGGQPY++E F+ELK
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELKAGAMKLRDQQK 240
Query: 226 ----------------------------------VESKLKQTTIWLEQQLAKEQAARLKG 251
VESKL++TT+ LEQQLA+EQAARLK
Sbjct: 241 EVDSLEGYTRQELKELKEQMHRSYDEQLKRITEMVESKLRETTMRLEQQLAEEQAARLKA 300
Query: 252 EEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESN 288
EE AQ AQRKSNDEIR+LRE+L+ A+ E+ + SN
Sbjct: 301 EENAQHAQRKSNDEIRQLREHLQRAQEELRKRGESSN 337
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 184/327 (56%), Positives = 232/327 (70%), Gaps = 47/327 (14%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG I+ DW+ ++NG RT+VL+GRTGNGKSATGNSILGR+AF++ + S+ +T TCE+
Sbjct: 6 MGGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+ TVL+DGQ+++VIDTPGLFD SAE E++ EI KCI MAKDGIHAVL+V SVR+RFS+E
Sbjct: 64 QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
E+AAV L+ FG KI DYM++VFTGGDDLEDNE+TLEDYLG +CP+PLK+IL +C NR
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK--------------- 225
VLFDNK+K K+ +Q++QLLSLVN V NGG+PYT++ F ELK
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELKKGAIKLRNQATEVNN 243
Query: 226 ------------------------------VESKLKQTTIWLEQQLAKEQAARLKGEEVA 255
VESKLK TT LE+QLAKEQAARL+ E A
Sbjct: 244 LVGYSKQEILELKEQMQKSYEEQLRRITEVVESKLKDTTHRLEEQLAKEQAARLEAELSA 303
Query: 256 QIAQRKSNDEIRKLRENLESARREIED 282
+ AQ+KS++EIRKLRE LE A+RE E+
Sbjct: 304 KEAQKKSDNEIRKLREYLERAQRETEE 330
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500386|gb|AFK38259.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 180/325 (55%), Positives = 224/325 (68%), Gaps = 46/325 (14%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG + DW+ TSS+N RTVV +GRTGNGKSATGNSILG++ FK+ A S +T +CE
Sbjct: 1 MGGNSFDEDWELTSSANEVRTVVSVGRTGNGKSATGNSILGKKVFKSRASSVGVTSSCES 60
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
T L DGQ VNVIDTPGLFD SA S++V KEI CI +AKDGIHA+++VFSVR+RFSQE
Sbjct: 61 HTIEL-DGQTVNVIDTPGLFDISAGSDFVGKEIVNCINLAKDGIHAIIVVFSVRTRFSQE 119
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
E A+ LQTLFG KI+DY +VVFTGGD+LE+ ++TLEDYLG +CP+PLK++L LC+NR
Sbjct: 120 EATALRSLQTLFGDKIYDYTVVVFTGGDELEEEDQTLEDYLGCDCPEPLKDLLSLCENRR 179
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK--------------- 225
+LFDNKTK E KR+EQVQQL S VN V +NGG+PYT++ FAELK
Sbjct: 180 LLFDNKTKDERKRSEQVQQLFSFVNMVLSQNGGRPYTDDLFAELKKGALKLHNQQSQVNS 239
Query: 226 ------------------------------VESKLKQTTIWLEQQLAKEQAARLKGEEVA 255
VESKL+ T+ LEQQLAKEQAARLK EE A
Sbjct: 240 LEGHSNKEILEYKKQAKQAYDDQLKRIAEMVESKLRDATLRLEQQLAKEQAARLKAEENA 299
Query: 256 QIAQRKSNDEIRKLRENLESARREI 280
+A+ +S+ EIR+LR++LE A E+
Sbjct: 300 NLARVRSDKEIRELRKHLERAHEEL 324
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515323|ref|XP_003526350.1| PREDICTED: protein AIG1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 181/349 (51%), Positives = 238/349 (68%), Gaps = 31/349 (8%)
Query: 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVN 72
TSSSN RT+VL+GRTGNGKSA GNS+LGRRAFK+ + SS +T+ CE++ T++KDG +VN
Sbjct: 4 TSSSNEVRTLVLVGRTGNGKSAVGNSVLGRRAFKSKSSSSGVTRVCELQRTIIKDGPIVN 63
Query: 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF 132
VIDTPGLFD + + KEI KCI MAKDGIHA+L+VFSV++RFS+EE+A LQ LF
Sbjct: 64 VIDTPGLFDGTHSA---GKEIVKCIDMAKDGIHAILMVFSVKTRFSEEEQATFLALQALF 120
Query: 133 GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAK 192
G KI DYMIVVFTGGD+LE+NE+TL+DYLG ECP+PLK+I+ LC NR +LFDNKTK + K
Sbjct: 121 GHKIVDYMIVVFTGGDELEENEETLDDYLGHECPQPLKDIMILCGNRKLLFDNKTKDKEK 180
Query: 193 RTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGE 252
+ QVQQLL+LV+ V +NGG P+TNE F ELK ++ T+ QQ A + E
Sbjct: 181 QLGQVQQLLTLVDMVISQNGGLPFTNELFIELK-----EKATMRDNQQKALDSLKGYSKE 235
Query: 253 EVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKETITRVEQ 312
E+ EI+ QM + +D++KR+I MVESKLKE + +
Sbjct: 236 EMF-----------------------EIKMQMQQKYDDELKRMINMVESKLKEETANLLK 272
Query: 313 QLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETEDQLHKSY 361
+L EE+ RLK EE + Q SN+EI +L+E+LE+ R + L +
Sbjct: 273 KLEEERVARLKAEENYRSFQNASNDEIRRLKEDLEKANRRRDPGLPFPF 321
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 371 | ||||||
| TAIR|locus:2009041 | 342 | AT1G33970 [Arabidopsis thalian | 0.840 | 0.912 | 0.470 | 4.1e-72 | |
| TAIR|locus:2203817 | 311 | AT1G33950 [Arabidopsis thalian | 0.741 | 0.884 | 0.45 | 2.7e-61 | |
| TAIR|locus:2203832 | 336 | AT1G33930 [Arabidopsis thalian | 0.668 | 0.738 | 0.490 | 5.4e-61 | |
| TAIR|locus:2203807 | 353 | AIG1 "AVRRPT2-INDUCED GENE 1" | 0.824 | 0.866 | 0.435 | 1.5e-60 | |
| TAIR|locus:2140558 | 394 | AT4G09940 [Arabidopsis thalian | 0.892 | 0.840 | 0.408 | 8.1e-60 | |
| TAIR|locus:2203802 | 334 | AT1G33890 [Arabidopsis thalian | 0.811 | 0.901 | 0.413 | 2.5e-58 | |
| TAIR|locus:2039528 | 463 | PP2-A3 "phloem protein 2-A3" [ | 0.835 | 0.669 | 0.404 | 2.5e-58 | |
| TAIR|locus:2140568 | 336 | AT4G09950 [Arabidopsis thalian | 0.857 | 0.946 | 0.420 | 2.8e-57 | |
| TAIR|locus:2203797 | 326 | AT1G33900 [Arabidopsis thalian | 0.808 | 0.920 | 0.401 | 1.2e-56 | |
| TAIR|locus:2203792 | 301 | AT1G33910 [Arabidopsis thalian | 0.746 | 0.920 | 0.416 | 1.7e-52 |
| TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 157/334 (47%), Positives = 226/334 (67%)
Query: 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM 60
MG ++ DW+ SSSN +RT+VL+GRTGNGKSATGNSILGR+AF++ A + +T TCE
Sbjct: 6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE 120
+ V +DG ++NV+DTPGLFD S ++++ KEI +CI +A+DGIHA+LLVFSVR R ++E
Sbjct: 66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVR-RLAEE 124
Query: 121 EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180
E+ + LQ LFG KI DYMIVVFTGGD+LE+NE+TLE+YL CP+ LKEIL +CDNR
Sbjct: 125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184
Query: 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVES-KLK--QTTIWL 237
VLF+NKT + K+ EQVQ+LLSLV +V +N G+PY++E F EL+ E+ KL+ + + L
Sbjct: 185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLRDQKKEVEL 244
Query: 238 EQQLAKEQAARLKGE----------EVAQIAQRKSNDEIRKLRENL---ESARREIEDQM 284
Q + + K + + ++ + K D ++L + L ++AR E E +
Sbjct: 245 LQGYSNNEIDEFKKQIDMSYDRQLSRITEMVETKLRDTAKRLEQQLGEEQAARLEAEKRA 304
Query: 285 HESNEDKIKRIIEMVESKLKETITRVEQQLAEEQ 318
+E KR + ++ KL+E + R E++ E Q
Sbjct: 305 NEVQ----KRSSDEIK-KLRENLERAEKETKELQ 333
|
|
| TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 126/280 (45%), Positives = 190/280 (67%)
Query: 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVI 74
SS +VL+GRTGNGKSATGNS++G++ F + A +S +T C+ V KDG +NVI
Sbjct: 12 SSKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVI 71
Query: 75 DTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK 134
DTPGLFD S +EY+SKEI +C+ +A+ GIHAVLLV S R+R +QEEE + LQ LFG
Sbjct: 72 DTPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGS 131
Query: 135 KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRT 194
+I DY++VVFTGGD LE+ ++TLEDYLG +CP +KE++++ NR V+ DNKT E K+
Sbjct: 132 QILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKA 191
Query: 195 EQVQQLLSLVNAVNVKNGGQPYTNECFAELKVES-KLKQTTIWLEQQ-LAKEQAARLKGE 252
EQV +LLSLV+ + G+ YT++ + +K ES KL++ LE + ++E AA +K +
Sbjct: 192 EQVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELESKNYSEECAAEMKNQ 251
Query: 253 EVAQIAQ--RKSNDEI-RKLRENLESARREIEDQMHESNE 289
+ + ++ ++++ +KL++ E+ + + E+NE
Sbjct: 252 SLILYKENLKQMSEQLEKKLKDAAEAQEKALSKMTQENNE 291
|
|
| TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61
Identities = 123/251 (49%), Positives = 172/251 (68%)
Query: 3 ERVINGD-WKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK 61
E V N D W+ S+S + VVL+GRTGNGKSATGNSI+GR+ F++ + +T C+
Sbjct: 18 EPVKNVDRWELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTF 77
Query: 62 TTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE 121
V DG ++NVIDTPGLFD + +E++SKEI C+ +A++G+HAV+LV S+ +R SQEE
Sbjct: 78 RAVTPDGPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEE 137
Query: 122 EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV 181
E A+ LQ LFG KI DY+IVVFT GD LED TLEDYL CP+ LK +L+LC R V
Sbjct: 138 ENALCTLQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRV 197
Query: 182 LFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVES-KLKQTTIWLEQQ 240
+FDN+TK E + +QVQQLL V A+ + GG P+T+ ++ E+ ++K+ +E++
Sbjct: 198 VFDNRTKDEGVKAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQEEAARVKREEKEIEEK 257
Query: 241 -LAKEQAARLK 250
+A E+ A LK
Sbjct: 258 NIADEEKAALK 268
|
|
| TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 136/312 (43%), Positives = 197/312 (63%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+GRTGNGKSATGNSI+ + FK+ SS +T C V +G ++NVIDTPGLFD
Sbjct: 45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104
Query: 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI 141
S +E++ KEI KC+ +A G+HAVLLV SVR+R SQEEE + LQ LFG KI DY+I
Sbjct: 105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYLI 164
Query: 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLL 201
VVFTGGD LED+ TLEDYLG P LK +L LC R +LFDNKTK + K+T+QV +LL
Sbjct: 165 VVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHELL 224
Query: 202 SLVNAVNVKNGGQPYTNECFAELKVESKL-KQTTIWLEQQ-LAKEQAARLKGEEVAQIAQ 259
L++ V +N PYT+E + +K E++ K+ LE + ++EQ A L E QI
Sbjct: 225 KLIDLVRKQNNNIPYTDEMYHMIKEENERHKKEQEELESKGHSEEQLAALMKE--LQIMN 282
Query: 260 RKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKETITRVEQQL-AEEQ 318
++ + ++ E E ++++ E E K + + + +++E + ++E ++ AE +
Sbjct: 283 ERNLKAMAEMMEKNMKIAMEAQEKLFEQRE-KAQEMSYQQKMEMQEKLKQMEGRMRAEME 341
Query: 319 ATRLKEEEVAQL 330
A L ++ + L
Sbjct: 342 AQMLSRQQCSIL 353
|
|
| TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 143/350 (40%), Positives = 223/350 (63%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79
RT++L+GR+GNGKSATGNSILGR+AFK+ +S +T CE++++ L +GQ++NVIDTPGL
Sbjct: 48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107
Query: 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139
F S +E+ +EI +C + K+GI AVLLVFS+++R ++EE++A+ L+ LFG KI DY
Sbjct: 108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167
Query: 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE-AKRTEQVQ 198
MIVVFT D LED+ T E+YL E KEIL+ C++R VLF N++ +++ +QVQ
Sbjct: 168 MIVVFTNEDSLEDDGDTFEEYL--EDSPDFKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225
Query: 199 QLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIA 258
+LL+ V + NG + Y A+L E + +T ++QQ E +E+ Q+
Sbjct: 226 ELLNYVEEIARLNG-KSY----MADLSHEIRENETAFQIKQQEILEMKGLYTRQEMLQMK 280
Query: 259 Q--RKS--NDEIRKLRENLESARREIEDQMHES-NEDKIKRIIEMVESKLKETITR---V 310
+ KS N ++R++ E +E+ RE ++++ + E+K R+ E+ E + KE R V
Sbjct: 281 KDMEKSFENQQLRQMMERVETELRETKERLEQQLKEEKSARL-EL-EKRAKEVEKRSSDV 338
Query: 311 EQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETEDQLHKS 360
++L +EQA RL+ E A+ A ++SN + L + L R ++ D L KS
Sbjct: 339 VKELNDEQAKRLESESRAKEAVKQSNGVVENLNKELARIKQMATD-LQKS 387
|
|
| TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 126/305 (41%), Positives = 194/305 (63%)
Query: 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNV 73
S+ + +VL+GRTGNGKSATGNS++G+ F + A ++ +TKTC+ V G +NV
Sbjct: 8 SAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSRINV 67
Query: 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG 133
IDTPGLFD S +E++SKEI C+ +A+ G+H V+LV SVR+R +QEEE + LQ LFG
Sbjct: 68 IDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQVLFG 127
Query: 134 KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKR 193
+I DY+IV+FTGGD+LE N +TL+DY CP LK +L LCD+R V+F+N TK + K+
Sbjct: 128 NEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKDKHKK 187
Query: 194 TEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESK-LKQTTIWLE-QQLAKEQAARLKG 251
EQVQQ L+LV V +N G+P+ + + E+K E++ LK+ +E L + + A++K
Sbjct: 188 VEQVQQFLALVAKVEERNEGKPFRGKMYLEIKEETEWLKKQKKAVEASNLGEAELAKMKK 247
Query: 252 EEVAQIAQRKSN--DEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKETITR 309
E + R S D ++ + + +A + ++E+ E+ + I++ ++ E R
Sbjct: 248 ELQMEHDTRMSQMEDMVKNMLKETSAAHERMVSMLNENLENAHRENIDLRKAHDHEQKKR 307
Query: 310 VEQQL 314
+ QL
Sbjct: 308 MMIQL 312
|
|
| TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 130/321 (40%), Positives = 196/321 (61%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG + FK+ + +T CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139
DS + +S EI C+ MA++GIHAVLLV S R R S+EEE+ V+ LQ +FG +I DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199
IVVFTGGDDLE++++TL+DY CP+ L ++L+LC R VLFDNK+K E K+ EQV+Q
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185
Query: 200 LLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQ 259
LL+ V V + GG PYT + ++K E+ E+ +E+ K A++A+
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIKEEND--------ERLREEERVIESKNRAEAELAE 237
Query: 260 RKSNDEIRKLRENLESARREIEDQMHESNEDKIK--RIIEMVESKLKETITRVEQQLAEE 317
+ N + K + +E A+ + E+NE ++ R E++L + + Q+ EE
Sbjct: 238 MQQNLLMEKEKLQMEEAKNKQLIAQAEANEKLMEQERAKNRAETELAAVMVE-KLQMEEE 296
Query: 318 QATRLKEEEVAQLAQRKSNEE 338
+ +L + + R N E
Sbjct: 297 KNKQLIAQANRMICARDLNIE 317
|
|
| TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 146/347 (42%), Positives = 215/347 (61%)
Query: 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL 65
+ DWKP ERT+VLLGRTGNGKSATGNSILG+ F++ A ITK C++ + L
Sbjct: 10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63
Query: 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAV 125
+G +NVIDTPGLF +S+ +++ +EI +C+ +AK GI AVLLVFS+R+R ++EE++ +
Sbjct: 64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123
Query: 126 HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185
L+ LFG +I DY+IVVFT D LE E TL+DYL +CP+ +EIL+ CD+R VLFDN
Sbjct: 124 RTLKILFGSQIVDYIIVVFTNEDALECGE-TLDDYLE-DCPE-FQEILEECDDRKVLFDN 180
Query: 186 KTKYE-AKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKE 244
+K+ QV LL+LV ++ KN G+ Y A+L E + + TI E+Q +
Sbjct: 181 SYNAPVSKKDRQVHDLLNLVEQISKKNNGKSY----MADLSHELRENEATI-KEKQ---K 232
Query: 245 QAARLKGEEVAQ-IAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKL 303
Q +KG Q I+Q K E + E LE + +I +Q+ ES ED +K + +++
Sbjct: 233 QIEEMKGWSSKQEISQMKKELE-KSHNEMLEGIKEKISNQLKESLED-VKEQLAKAQAER 290
Query: 304 KETITRVE--QQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLER 348
+ET ++ Q+L+ ++ RL+E QL K+ +E LR L +
Sbjct: 291 EETEKKMNEIQKLSSDEIRRLRE----QL--NKAEKETASLRTELNK 331
|
|
| TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 124/309 (40%), Positives = 196/309 (63%)
Query: 9 DWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG 68
D + S+S + +VL+GRTGNGKSATGNS++G++ F++ ++ +T CE V G
Sbjct: 9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68
Query: 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRL 128
+NVIDTPGLFD S +EY+S+EI C+ +A+DG+HAV+LV SVR+R SQEEEA ++ L
Sbjct: 69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEATLNTL 128
Query: 129 QTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTK 188
Q +FG +I DY++V+FTGGD+LE N TL+DYL CP+ LK +L+LC R +LFDN+T
Sbjct: 129 QVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRRILFDNRTT 188
Query: 189 YEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAAR 248
E K+ +QVQ+LL+ V A+ G P+T+E +++ E+ +T ++++ + A
Sbjct: 189 DEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQKEA---ETLREQQKEVESKDLAA 245
Query: 249 LKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHE---SNEDKIKRIIEMVESKLKE 305
+ E+ + Q + + + + E L + RE ++ + + D ++ I ++KL E
Sbjct: 246 AEIEKWKKHYQTEHDKNMNMMAEMLGNRLREDSERQEKMLLALRDNLE--ISQRQNKLNE 303
Query: 306 TITRVEQQL 314
+T E L
Sbjct: 304 -LTDNEPDL 311
|
|
| TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 122/293 (41%), Positives = 183/293 (62%)
Query: 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNV 73
S+S R +VL+G TGNGKS+TGNS++G+ F + KTC+ KT DGQ++NV
Sbjct: 8 SASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILE---TVECKTCKAKTL---DGQIINV 61
Query: 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG 133
IDTPGLFD S ++Y++KEI C+ + G+HAV+LV SV + +EEEAA+++LQ LFG
Sbjct: 62 IDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLFG 121
Query: 134 KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKR 193
KI DY++V+FTGGD LE KTL+DYL CP+ LK +L+LC R VLF+NKT E K+
Sbjct: 122 SKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLKTVLRLCGGRRVLFNNKTTDEVKK 181
Query: 194 TEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEE 253
EQV+QLL+ V A+ NGG+ E E + K +Q + +EQ++ + K E
Sbjct: 182 IEQVKQLLAHVEAIENLNGGKALFTE---ENDLNEK-RQGEMLMEQEMEVQS----KKPE 233
Query: 254 VAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKET 306
++ + K EI + + + +ED + ES+ +R++ ++ K++ +
Sbjct: 234 NTEVEEMKKQLEI-SYGQQMNMMAQMVEDTLKESSASH-ERMLLALKDKVERS 284
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 371 | |||
| pfam04548 | 211 | pfam04548, AIG1, AIG1 family | 5e-95 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 3e-88 | |
| cd01853 | 248 | cd01853, Toc34_like, Translocon at the Outer-envel | 5e-13 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-08 | |
| TIGR00993 | 763 | TIGR00993, 3a0901s04IAP86, chloroplast protein imp | 2e-07 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-06 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 2e-06 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 9e-06 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 2e-05 | |
| TIGR00991 | 313 | TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch | 4e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 3e-04 | |
| COG1322 | 448 | COG1322, COG1322, Predicted nuclease of restrictio | 8e-04 | |
| pfam09731 | 493 | pfam09731, Mitofilin, Mitochondrial inner membrane | 0.001 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| pfam09726 | 680 | pfam09726, Macoilin, Transmembrane protein | 0.004 |
| >gnl|CDD|218141 pfam04548, AIG1, AIG1 family | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 5e-95
Identities = 114/208 (54%), Positives = 157/208 (75%), Gaps = 5/208 (2%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79
+VL+G+TGNGKSATGNSILGR+AF++ + +TKTC++ + DG+++NVIDTPGL
Sbjct: 1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59
Query: 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139
FD S ++++SKEI +C+ +A+ G HAVLLV S+ RF++EEE A+ LQ LFG KI DY
Sbjct: 60 FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118
Query: 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199
MIVVFT DDLED+ L+DYL CP+ LKE+L+ C R+VLF+NK E ++ EQVQQ
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKEVLRECGGRYVLFNNKADGE-EKEEQVQQ 175
Query: 200 LLSLVNAVNVKNGGQPYTNECFAELKVE 227
LL+LV A+ +NGG+PYTN+ + ++K E
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIKEE 203
|
Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 264 bits (677), Expect = 3e-88
Identities = 102/206 (49%), Positives = 146/206 (70%), Gaps = 6/206 (2%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79
+VL+G+TGNGKSATGN+ILGR+ F++ +S +TKTC+ ++ V DG+ VNVIDTPGL
Sbjct: 1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59
Query: 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139
FD+S E +SKEI +C+ ++ G HA LLV + RF++EEE AV LQ LFG+K+ D+
Sbjct: 60 FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118
Query: 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199
IV+FT GDDLE +LEDYL + + LK +L+ C R+V F+NK K ++ +QV++
Sbjct: 119 TIVLFTRGDDLEGG--SLEDYLE-DSCEALKRLLEKCGGRYVAFNNKAK-GREQEQQVKE 174
Query: 200 LLSLVNAVNVKNGGQPYTNECFAELK 225
LL+ V + +NGG+PYTNE + E +
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAE 200
|
This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like) | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-13
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80
T+++LG+TG GKS+T NSI G R SA S + E+ TV DG +N+IDTPGL
Sbjct: 33 TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90
Query: 81 DSSAESEYVSKEIAKCIG--MAKDGIHAVLLVFSVRSRFSQEEEAAVHR--LQTL---FG 133
+S + V+++I I + K I VL V R + L+ + FG
Sbjct: 91 ESQ--DQRVNRKILSIIKRFLKKKTIDVVLYV----DRLDMYRVDNLDVPLLRAITDSFG 144
Query: 134 KKIFDYMIVVFT 145
I+ IVV T
Sbjct: 145 PSIWRNAIVVLT 156
|
The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQV-VNVIDTPGLFD 81
V++GR G GKS+ N++LG + S T+ ++ L G+V + ++DTPGL +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPG-TTRDPDVYVKELDKGKVKLVLVDTPGLDE 59
Query: 82 SSAE-SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140
E +++ + + G +LLV R S EE+A + L+ L + I +
Sbjct: 60 FGGLGREELARLLLR-------GADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PI 109
Query: 141 IVVFTGGDDLEDNEKTLEDYL 161
I+V D LE+ E L
Sbjct: 110 ILVGNKIDLLEEREVEELLRL 130
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80
+++LG++G GKSAT NSI G F A T E++ V G + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLK 177
Query: 81 DSSAESEYVSK 91
S+++ K
Sbjct: 178 SSASDQSKNEK 188
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 23 VLLGRTGNGKSATGNSILGRRAFKAS--AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80
+ GR GKS+ N++LG+ S G+ T+ K L V +IDTPGL
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGT---TRDPVRKEWELLPLGPVVLIDTPGLD 57
Query: 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140
+ +E + D VLLV V S + EE A L GK +
Sbjct: 58 EEGGLGRERVEEARQVA----DRADLVLLV--VDSDLTPVEEEAKLGLLRERGKPV---- 107
Query: 141 IVVFTGGDDLEDNEK 155
++V D + ++E+
Sbjct: 108 LLVLNKIDLVPESEE 122
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-06
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKAS--AGSSAITKTCEMKTTVLKDGQVVNVIDTPG 78
V L+GR GKS N++ G + S G T + VL G+ + ++DTPG
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPG-----TTRDPILGVLGLGRQIILVDTPG 55
Query: 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFD 138
L + ++E + V + + + ++ +LLV ++++E + L+ L K
Sbjct: 56 LIEGASEGKGV-EGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP--- 110
Query: 139 YMIVVFT 145
+I+V
Sbjct: 111 -IILVLN 116
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 9e-06
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 25/139 (17%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK----DGQVVNVIDT 76
+ ++G GKS N++LG + T TVL+ G V ++DT
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVL----PTGVTPTTA--VITVLRYGLLKG--VVLVDT 53
Query: 77 PGLFDSSAESEYVSKE-IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK 135
PGL + +++ + + AV+ V S ++ E + + GKK
Sbjct: 54 PGLNSTIEHHTEITESFLPRA--------DAVIFVLSADQPLTESEREFLKEILKWSGKK 105
Query: 136 IFDYMIVVFTGGDDLEDNE 154
IF V D L + E
Sbjct: 106 IF----FVLNKIDLLSEEE 120
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 24/151 (15%)
Query: 225 KVESKLKQTTIW---------------LEQQLAKEQAARLKGEEVAQIAQ-----RKSND 264
KVE KL + IW L + L+K + E+ +
Sbjct: 363 KVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEK 422
Query: 265 EIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKETITRVEQQLAEEQATRLKE 324
I+KL E +E E + E E +KR IE +ES+L+ V ++ +++ R ++
Sbjct: 423 RIKKLEETVERLEEENSELKRELEE--LKREIEKLESELERFRREVRDKVRKDREIRARD 480
Query: 325 EEVAQLAQRKSNEEIHKLRENLERTQRETED 355
+ +L + ++ K E LER E
Sbjct: 481 RRIERLEKELEEKK--KRVEELERKLAELRK 509
|
Length = 652 |
| >gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80
T++++G+ G GKS+T NSI+G R SA S + + T + G +N+IDTPGL
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97
Query: 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR---SRFSQEEEAAVHRLQTLFGKKIF 137
E Y++ + I G +L++ R R + + + FGK I+
Sbjct: 98 ----EGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIW 153
Query: 138 DYMIVVFT 145
+VV T
Sbjct: 154 RKSLVVLT 161
|
[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313 |
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 32/153 (20%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 221 FAELKVESKLKQTTIWLEQQLAKE--QAARLKGEEVAQIAQRKSNDEIRKLRENLESARR 278
+ E+K+K+ ++ AK + A+ + E + + A ++ +EI KLR E R
Sbjct: 24 VRKKIAEAKIKEA-----EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELR 78
Query: 279 EIEDQMHESNEDKIKRIIEMVESKLKETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEE 338
E +++ + E ++ + E ++ KL E + + E++L +++ ++++ + + + E
Sbjct: 79 ERRNEL-QKLEKRLLQKEENLDRKL-ELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136
Query: 339 IHKLRENLER----TQRETEDQLHKSYEDRIKR 367
I + + LER T E ++ L + E+ +
Sbjct: 137 IEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
|
Length = 520 |
| >gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 237 LEQQLAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRII 296
L + A+ Q L+ E Q+ + +E E+ ++ E N+ +K+++
Sbjct: 75 LNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLL 134
Query: 297 EM---VESKLKETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKL 342
+ V K +E + + + AEE++T L+E + ++ +E L
Sbjct: 135 KPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNL 183
|
Length = 448 |
| >gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 222 AELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIE 281
E ++E LK+ L +L +E ARL+ +E A Q LR E + E+
Sbjct: 186 EEEELERALKEKREELLSKLEEELLARLESKEAALEKQ---------LRLEFEREKEELR 236
Query: 282 DQMHESNEDKIKRIIEMVESKLKETITRVEQQLAEEQATRLKE----EEVAQLAQ 332
+ E +++R E E KLK + +L E +KE E +LA+
Sbjct: 237 KKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGRLAK 291
|
Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 34/183 (18%), Positives = 78/183 (42%), Gaps = 20/183 (10%)
Query: 190 EAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARL 249
E + E ++L +L N ++ + E A L+ + + + + + E A L
Sbjct: 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339
Query: 250 K--GEEVAQI-----AQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESK 302
E++ ++ + +E+ E LES E+E+Q+ E ++ ++ +
Sbjct: 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKVAQL---E 392
Query: 303 LKETITRVEQQLAEEQATRLKE------EEVAQLAQRKSNEEIHKLRENLERTQRETEDQ 356
L+ E + E + RL++ +E+ +L ++ E+ +L+ LE + E E+
Sbjct: 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
Query: 357 LHK 359
+
Sbjct: 453 QEE 455
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 37/188 (19%), Positives = 78/188 (41%), Gaps = 13/188 (6%)
Query: 184 DNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAK 243
+ K K E + + + ++L A K + E + E K+K ++ K
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA------EEAKK 1614
Query: 244 EQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKL 303
+ A++K EE+ + + K E K +E +++ E+ E+KIK K
Sbjct: 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKE--AEEKKKAEELKKAEEENKIKA--AEEAKKA 1670
Query: 304 KETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETEDQLHKSYED 363
+E + E+ E+ + E + + A+ E +L++ +++ E +L K+ E+
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE--ELKKKEAEEKKKAE-ELKKAEEE 1727
Query: 364 RIKRTTEM 371
+ E
Sbjct: 1728 NKIKAEEA 1735
|
Length = 2084 |
| >gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 35/136 (25%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 237 LEQQLAK-----EQAARLKGEEVAQIAQRKSNDEIRKLRENLESARRE---IEDQMHE-- 286
LEQ + K +QA + + E QI+ S + R L+ +L ++E ++ +++
Sbjct: 411 LEQDIKKLQAELQQARQNESELRNQISLLTSLE--RSLKSDLGQLKKENDMLQTKLNSMV 468
Query: 287 SNEDKIKRIIEMVESKLK---ETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLR 343
S + K K+ ++ +E +LK ++ E+QLAEE+ + +EEE A A ++ +
Sbjct: 469 SAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECA 528
Query: 344 ENLERTQRETEDQLHK 359
E+L++ +++ E ++ K
Sbjct: 529 ESLKQAKQDLEMEIKK 544
|
This entry is a highly conserved protein present in eukaryotes. Length = 680 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 100.0 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 100.0 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.89 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.87 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.87 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.83 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.81 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.8 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.8 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.8 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 99.78 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.78 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.77 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.75 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.75 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.75 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.74 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.74 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.74 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.74 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.74 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.74 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.74 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.73 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.73 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.72 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.72 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.72 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.71 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.71 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.71 | |
| KOG2655 | 366 | consensus Septin family protein (P-loop GTPase) [C | 99.71 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.71 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.71 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.71 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.7 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.7 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.7 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.7 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.7 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.69 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.69 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.69 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.69 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.69 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.69 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.68 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.68 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.68 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.68 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.68 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.68 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.68 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.68 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.67 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.67 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.67 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.67 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.67 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.67 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.67 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.67 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.67 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.67 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.67 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.66 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.66 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.66 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.66 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.66 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.66 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.66 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.66 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.66 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.65 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.65 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.65 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.65 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.65 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.65 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.64 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.64 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.64 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.64 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.64 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.64 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.64 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.64 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.64 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.64 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.63 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.63 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.63 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.63 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.63 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.63 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.63 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.63 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.63 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.63 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.63 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.63 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.63 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.62 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.62 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.62 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.62 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.62 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.62 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.62 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.62 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.62 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.62 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.62 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.62 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.61 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.61 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.61 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.61 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.61 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.61 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.61 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.61 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.61 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.6 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.6 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.6 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.6 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.6 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.6 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.6 | |
| KOG1547 | 336 | consensus Septin CDC10 and related P-loop GTPases | 99.6 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.6 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.6 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.6 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.59 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.59 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.59 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.59 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.59 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.59 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.59 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.59 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.59 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.59 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.58 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.58 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.58 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.58 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.58 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.58 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.57 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.57 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.57 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.57 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.57 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.57 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.57 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.56 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.56 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.56 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.56 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.56 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.56 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.55 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.55 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.54 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.54 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.54 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.54 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.54 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.53 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.53 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.53 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.53 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.53 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.53 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.52 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.52 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.52 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.51 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.51 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.51 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.51 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.51 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.5 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.5 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.5 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.49 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.49 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.49 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.49 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.49 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.48 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.48 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.48 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.48 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.48 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.48 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.47 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.47 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.47 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.47 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.47 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.47 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.46 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.46 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.46 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.45 | |
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.45 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.45 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.44 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.44 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.44 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.44 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.44 | |
| KOG3859 | 406 | consensus Septins (P-loop GTPases) [Cell cycle con | 99.43 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.42 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.41 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.41 | |
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.4 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.4 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.4 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.4 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.4 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.39 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.39 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.39 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.39 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.39 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.38 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.38 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.38 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.37 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.36 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.36 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.35 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.35 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.35 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.34 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.32 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.32 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.32 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.3 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.3 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.3 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.3 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.29 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.28 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.27 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.27 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.27 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.26 | |
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.25 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.25 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.22 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.22 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.21 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.2 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.18 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.16 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.16 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.15 | |
| KOG1532 | 366 | consensus GTPase XAB1, interacts with DNA repair p | 99.14 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.13 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.13 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.12 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.11 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.1 | |
| KOG1954 | 532 | consensus Endocytosis/signaling protein EHD1 [Sign | 99.09 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.09 | |
| KOG0448 | 749 | consensus Mitofusin 1 GTPase, involved in mitochon | 99.08 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 99.07 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.06 | |
| PRK13768 | 253 | GTPase; Provisional | 99.06 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.05 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.05 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.03 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.03 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.02 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.02 | |
| KOG0447 | 980 | consensus Dynamin-like GTP binding protein [Genera | 99.01 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 98.99 | |
| KOG0070 | 181 | consensus GTP-binding ADP-ribosylation factor Arf1 | 98.99 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 98.98 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.94 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 98.93 | |
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 98.93 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 98.92 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 98.91 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 98.91 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.9 | |
| KOG0071 | 180 | consensus GTP-binding ADP-ribosylation factor Arf6 | 98.89 | |
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 98.86 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 98.85 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.85 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.83 | |
| KOG0458 | 603 | consensus Elongation factor 1 alpha [Translation, | 98.82 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.81 | |
| KOG2486 | 320 | consensus Predicted GTPase [General function predi | 98.81 | |
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.8 | |
| KOG0461 | 522 | consensus Selenocysteine-specific elongation facto | 98.8 | |
| KOG0468 | 971 | consensus U5 snRNP-specific protein [Translation, | 98.8 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 98.78 | |
| KOG0090 | 238 | consensus Signal recognition particle receptor, be | 98.77 | |
| KOG0393 | 198 | consensus Ras-related small GTPase, Rho type [Gene | 98.77 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 98.77 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.77 | |
| KOG4252 | 246 | consensus GTP-binding protein [Signal transduction | 98.76 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 98.76 | |
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.76 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 98.75 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.75 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.74 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.72 | |
| KOG0074 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 98.71 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.71 | |
| KOG0076 | 197 | consensus GTP-binding ADP-ribosylation factor-like | 98.7 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.7 | |
| PTZ00099 | 176 | rab6; Provisional | 98.69 | |
| KOG3883 | 198 | consensus Ras family small GTPase [Signal transduc | 98.69 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 98.68 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.68 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.68 | |
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 98.67 | |
| KOG0072 | 182 | consensus GTP-binding ADP-ribosylation factor-like | 98.63 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.62 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.62 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.61 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.61 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.6 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.58 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 98.57 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.56 | |
| KOG0464 | 753 | consensus Elongation factor G [Translation, riboso | 98.54 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.53 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.53 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.53 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.5 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.5 | |
| KOG0467 | 887 | consensus Translation elongation factor 2/ribosome | 98.49 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 98.49 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.48 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 98.47 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 98.46 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 98.45 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 98.44 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.44 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 98.43 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 98.4 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 98.4 | |
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 98.39 | |
| KOG3886 | 295 | consensus GTP-binding protein [Signal transduction | 98.39 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 98.38 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.37 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 98.37 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 98.37 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.36 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 98.35 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.32 | |
| KOG0465 | 721 | consensus Mitochondrial elongation factor [Transla | 98.3 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 98.3 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.29 | |
| KOG0460 | 449 | consensus Mitochondrial translation elongation fac | 98.29 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 98.29 | |
| KOG0077 | 193 | consensus Vesicle coat complex COPII, GTPase subun | 98.29 | |
| KOG1673 | 205 | consensus Ras GTPases [General function prediction | 98.29 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 98.28 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 98.28 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 98.28 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.27 | |
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.27 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 98.26 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.23 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 98.2 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 98.18 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 98.18 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 98.17 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 98.16 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 98.15 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 98.15 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 98.14 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 98.13 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 98.13 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 98.11 | |
| KOG0096 | 216 | consensus GTPase Ran/TC4/GSP1 (nuclear protein tra | 98.09 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.08 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 98.08 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 98.07 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 98.06 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 98.05 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 98.05 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 98.04 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 98.04 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 98.03 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 98.03 | |
| KOG1143 | 591 | consensus Predicted translation elongation factor | 98.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.99 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 97.98 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 97.98 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 97.97 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 97.95 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 97.95 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 97.92 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.92 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.91 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 97.9 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 97.88 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 97.87 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 97.85 | |
| KOG0466 | 466 | consensus Translation initiation factor 2, gamma s | 97.85 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.85 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 97.84 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 97.83 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 97.83 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 97.82 | |
| KOG0780 | 483 | consensus Signal recognition particle, subunit Srp | 97.82 | |
| KOG3905 | 473 | consensus Dynein light intermediate chain [Cell mo | 97.82 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.82 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 97.81 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 97.8 | |
| KOG0082 | 354 | consensus G-protein alpha subunit (small G protein | 97.79 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 97.79 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 97.79 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 97.78 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 97.78 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 97.77 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 97.76 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 97.74 | |
| KOG0962 | 1294 | consensus DNA repair protein RAD50, ABC-type ATPas | 97.74 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.74 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 97.74 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 97.71 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 97.71 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.71 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.7 | |
| KOG0446 | 657 | consensus Vacuolar sorting protein VPS1, dynamin, | 97.7 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 97.68 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 97.68 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 97.68 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.68 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 97.68 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 97.67 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.67 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 97.67 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 97.66 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 97.66 | |
| PF05879 | 742 | RHD3: Root hair defective 3 GTP-binding protein (R | 97.65 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 97.65 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 97.65 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 97.62 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 97.62 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 97.62 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.62 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 97.61 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 97.6 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 97.59 | |
| PF02263 | 260 | GBP: Guanylate-binding protein, N-terminal domain; | 97.58 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 97.58 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 97.57 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 97.57 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.56 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 97.56 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.56 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 97.55 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 97.55 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 97.55 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 97.53 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 97.53 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.53 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 97.52 | |
| KOG0459 | 501 | consensus Polypeptide release factor 3 [Translatio | 97.52 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 97.52 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 97.51 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.51 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 97.5 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 97.5 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 97.5 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.49 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.48 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 97.47 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 97.47 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 97.47 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 97.46 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.45 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 97.45 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.45 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.45 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.45 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.45 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 97.45 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.45 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 97.44 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.44 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 97.44 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 97.44 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 97.43 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.43 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 97.43 |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=264.77 Aligned_cols=206 Identities=42% Similarity=0.750 Sum_probs=176.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|+||||++|+|+|...|.+..+..++|..+......+ .+..++|||||||+|+..+.+.+..++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4799999999999999999999999998877788888888888876 999999999999999988888888999999999
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
..+++|+||||++++ +++..+...++.+...||..++++++||+|++|.+.+ ..+++|+....+..++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 999999999999999 9999999999999999999999999999999999887 6699999865567799999999999
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESK 229 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~ 229 (371)
++.|+|..........++.+||+.|..++..++|.+|++++|.+++....
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 99999996666667799999999999999999999999999999995444
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=246.74 Aligned_cols=196 Identities=51% Similarity=0.847 Sum_probs=176.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|+|+|...+.+.....++|..+......+ .+..++||||||+++...+......++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999998877666677888888877777 889999999999999876666677888888888
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
+.+++|++|||++++. ++..+...++.++..||..+++++++|+|++|.+.+ .++++|+.. .+..++.++..|++|
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 8899999999999985 999999999999999999888999999999999977 689999885 558899999999999
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECF 221 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~ 221 (371)
++.|+|... ++..+.|+.+|++.|..+++.|++.+|++++|
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999987 77889999999999999999999999998764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-22 Score=179.20 Aligned_cols=204 Identities=19% Similarity=0.276 Sum_probs=152.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+++|+|++|||||+|.|+|... +..++.+.|+......+...+...+.++||||++.+ .....+-+.+.+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 5799999999999999999999998 666666667666666555557789999999999976 44567778888888
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhh-HHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKT-LEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~-l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
++..+|+++||+|++.++...+...++.++.. . .|+++++||+|...+ .. +..... ...
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---~--~pvil~iNKID~~~~--~~~l~~~~~---------~~~---- 141 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT---K--TPVILVVNKIDKVKP--KTVLLKLIA---------FLK---- 141 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc---C--CCeEEEEEccccCCc--HHHHHHHHH---------HHH----
Confidence 99999999999999988999999999998872 2 399999999998876 33 222222 111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQ 256 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 256 (371)
..+.|....+.||+++.++..|++.+...++++ ..+|..+++.+...+- ...++++++- +..+..|+++.
T Consensus 142 ~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg-~~~yp~d~itD~~~rf--~~aEiiREk~-----~~~l~eElPhs 211 (298)
T COG1159 142 KLLPFKEIVPISALKGDNVDTLLEIIKEYLPEG-PWYYPEDQITDRPERF--LAAEIIREKL-----LLLLREELPHS 211 (298)
T ss_pred hhCCcceEEEeeccccCCHHHHHHHHHHhCCCC-CCcCChhhccCChHHH--HHHHHHHHHH-----HHhcccccCce
Confidence 123455666789999999999999999999974 4477776666655322 3233454433 55566655544
|
|
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=176.79 Aligned_cols=159 Identities=24% Similarity=0.326 Sum_probs=117.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
...+.+..+|+|+|.+|+||||++|+|+|...+..... .+.+..+....... ++..+.||||||+++....+.... +
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~ 108 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-N 108 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-H
Confidence 44455678999999999999999999999886433221 22233333333444 788999999999998643333222 2
Q ss_pred HHHHHhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
+.++. ....++|++|||.+.+ .+++..+..+++.+...||..++.++|+|+||+|...+++.++++|+.+ +...++.
T Consensus 109 ~ik~~-l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 109 IIKRF-LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHH-hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22222 1234899999997665 4788899999999999999999999999999999886666889999985 7778888
Q ss_pred HHHhc
Q 040649 172 ILQLC 176 (371)
Q Consensus 172 ~~~~~ 176 (371)
++..+
T Consensus 187 ~i~~~ 191 (313)
T TIGR00991 187 VIHSG 191 (313)
T ss_pred HHHHH
Confidence 87754
|
|
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=188.41 Aligned_cols=162 Identities=22% Similarity=0.294 Sum_probs=125.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|+|+|...+.+..... .|+.+....... .+..++||||||++++.... .....+..++.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHHH
Confidence 4689999999999999999999998876644333 344444433444 78899999999999875432 23445555553
Q ss_pred hh--cCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-----hhHHHHhcccCCchHH
Q 040649 99 MA--KDGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-----KTLEDYLGLECPKPLK 170 (371)
Q Consensus 99 ~~--~~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-----~~l~~~l~~~~~~~l~ 170 (371)
.+ ..++|+||||++++. .....+..+++.|...||..+|+++||||||+|.+.+++ .++++|+.+ ++..++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 22 347899999998762 233467789999999999999999999999999986432 589999985 889999
Q ss_pred HHHHhcCCceEeec
Q 040649 171 EILQLCDNRWVLFD 184 (371)
Q Consensus 171 ~~~~~~~~r~~~f~ 184 (371)
.++..|.+++..|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999999777665
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=156.87 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+++|.|++|||||+|+|+|.... ...++++|.......+.+ .+..+.+|||||+++...... ++-...-..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~---ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE---EERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH---HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc---HHHHHHHHH
Confidence 47999999999999999999999953 344677888777777776 778999999999987644321 111111122
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|++++|+|++ .+. .+..++..+.+. | .|+++|+||+|.....+..++ ...+-...+.+
T Consensus 75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 256799999999998 333 334455555543 3 399999999997644222221 33444455667
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLV 204 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i 204 (371)
++++ ||.++.|+++|++.|
T Consensus 138 vi~~------sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPV------SARTGEGIDELKDAI 156 (156)
T ss_dssp EEEE------BTTTTBTHHHHHHHH
T ss_pred EEEE------EeCCCcCHHHHHhhC
Confidence 7764 566789999999865
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=163.00 Aligned_cols=134 Identities=29% Similarity=0.375 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc---hHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE---SEYVSKE 92 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~---~~~~~~e 92 (371)
.....+|+|+|++|+|||||+|+|+|...+... ...+.|..+......+ ++..++||||||+.+.... .......
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 345689999999999999999999998875443 2334565566555555 7889999999999986321 1222222
Q ss_pred HHHHHhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
+..++. ..++|+++||..++ .+++..+..+++.+...||..++.++++|+||+|...++
T Consensus 106 I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 322222 24689999998776 478888999999999999999999999999999987554
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=168.48 Aligned_cols=161 Identities=22% Similarity=0.232 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|++||+|++|||||+|.|+|....-. ...+++|.+..+....| .+..+.+|||+|+.+.+ .+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 6899999999999999999999886322 33578899888888888 88889999999998642 34566777777777
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
+...+|++|||+|+..++++.|..+..+|+.. .+|+++|+||+|..... .... ++...--+.
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~e-~~~~------------efyslG~g~ 141 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKAE-ELAY------------EFYSLGFGE 141 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchhh-hhHH------------HHHhcCCCC
Confidence 88889999999999999999999999999832 24999999999976331 1122 222211123
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
++ ..||.++.|+.+|++.+...+
T Consensus 142 ~~------~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 142 PV------PISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ce------EeehhhccCHHHHHHHHHhhc
Confidence 33 378889999999999999886
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=163.64 Aligned_cols=180 Identities=20% Similarity=0.320 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|++|||||||+|+|+|..... .+..+.|+..........++..+.++||||+.+.. ......+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 579999999999999999999987632 22233333333333322245689999999998753 2233444555556
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
+...+|+++||+|++.+++..+..++..+... ..|+++|+||+|..... ..+...+. .+....+
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~-~~l~~~~~--------~l~~~~~-- 144 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDK-EELLPLLE--------ELSELMD-- 144 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCH-HHHHHHHH--------HHHhhCC--
Confidence 67789999999999976777777666666531 24999999999987331 23333222 2222111
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAEL 224 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~ 224 (371)
+.+....|++++.|+.+|++.+...++... ..|..+.+...
T Consensus 145 ---~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~~~td~ 185 (292)
T PRK00089 145 ---FAEIVPISALKGDNVDELLDVIAKYLPEGP-PYYPEDQITDR 185 (292)
T ss_pred ---CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCCCCCCC
Confidence 223334677888999999999999988754 35665544443
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-18 Score=161.75 Aligned_cols=177 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|++|+|||||+|+|+|.... ..+..+.|+..........++..+.++||||+.... ......+......+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 6899999999999999999998752 222222233222223333355679999999998642 12333344445556
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
+..+|++++|+|++.+.+.. ..++..+... ..|+++|+||+|.... ..+.... ..+....+
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~--- 137 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKFK--DKLLPLI--------DKYAILED--- 137 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcC---
Confidence 67889999999998654443 4444444432 2499999999998643 2222222 22222111
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHH
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAEL 224 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~ 224 (371)
|......||+++.|+++|++.+...++..+ ..|..+.....
T Consensus 138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~-~~~~~~~~t~~ 178 (270)
T TIGR00436 138 --FKDIVPISALTGDNTSFLAAFIEVHLPEGP-FRYPEDYVTDQ 178 (270)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHhCCCCC-CCCCCcccCCC
Confidence 122334788899999999999999987643 35665555444
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=145.58 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH---HHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE---YVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~---~~~~ei~ 94 (371)
..+-|+++|+|++|||||||+|+|..........+|.|....++.+. ..+.+||.||++-..++.. .....+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 45789999999999999999999977433333456777666654432 2378999999998766542 2223334
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.++... ..+.++++++|+++++...|..+++++... .+ |+++|+||+|.+.. ......+.. +...+.
T Consensus 99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~---~i--~~~vv~tK~DKi~~--~~~~k~l~~-----v~~~l~ 165 (200)
T COG0218 99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL---GI--PVIVVLTKADKLKK--SERNKQLNK-----VAEELK 165 (200)
T ss_pred HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc---CC--CeEEEEEccccCCh--hHHHHHHHH-----HHHHhc
Confidence 444332 247899999999999999999999999875 33 99999999999976 333322222 222221
Q ss_pred -hcCCc--eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 -LCDNR--WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 -~~~~r--~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..... +.. .|..++.|+++|...|...+..
T Consensus 166 ~~~~~~~~~~~------~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 166 KPPPDDQWVVL------FSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCccceEEE------EecccccCHHHHHHHHHHHhhc
Confidence 11111 233 3445668899999998876653
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=150.53 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=112.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC----CCC--CccceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS----AGS--SAITKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~ 88 (371)
-..+|+++|++|+|||||+|+|+|....... ... ...|.........+. ++ ..++|||||||+|.-. +..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id-Ns~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID-NSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc-ccc
Confidence 4579999999999999999999998543221 111 122333333333331 22 2799999999998633 355
Q ss_pred HHHHHHHHHhhh------------------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 89 VSKEIAKCIGMA------------------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 89 ~~~ei~~~~~~~------------------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+..+..++... -..+||+||.+..+ +++++.|..+++.|... .++|.|+.|.|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence 555555554321 24689999999765 78999999888888765 299999999999
Q ss_pred CCCchhhHHHHhcccCCchHHHHHHhcCCceE-eecCcc
Q 040649 150 LEDNEKTLEDYLGLECPKPLKEILQLCDNRWV-LFDNKT 187 (371)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~-~f~~~~ 187 (371)
+.. ..+..+... +...+..+..++| +|++..
T Consensus 175 lT~--~El~~~K~~-----I~~~i~~~nI~vf~pyd~e~ 206 (373)
T COG5019 175 LTD--DELAEFKER-----IREDLEQYNIPVFDPYDPED 206 (373)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHhCCceeCCCCccc
Confidence 988 778877766 8889999999888 566654
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=161.87 Aligned_cols=202 Identities=20% Similarity=0.243 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-CccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-SAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|.|+|.... ..++ ..+|.......+.+ ++..+.+|||||+..... .....+.+...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 48999999999999999999998763 2222 23333333333444 677899999999865322 23334455555
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.++.++|++|||+|...++...+..++..+... + .|.++|+||+|.... .+.+ +...+.....
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~---------~~~~l~~~~~ 189 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLND---------IKAFLTENHP 189 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHH---------HHHHHHhcCC
Confidence 556788999999998877777776666666542 2 277889999997532 1211 2222222221
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQ 256 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 256 (371)
+....+.||+++.|+++|++.+...++. +...|..+++.+.-.+ ..-.+++++ +.+..+..|+++.
T Consensus 190 ----~~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~td~~~~--~~~~eiiRe-----~~~~~~~~EiP~~ 255 (339)
T PRK15494 190 ----DSLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDDITDLPMR--FIAAEITRE-----QLFLNLQKELPYK 255 (339)
T ss_pred ----CcEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCCCCCCCHH--HHHHHHHHH-----HHHhhCCcccCce
Confidence 1122346888999999999999998886 4456776666655321 122223444 3366666666644
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=141.17 Aligned_cols=163 Identities=23% Similarity=0.207 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~ei~~~~~ 98 (371)
++|+++|++|+|||||+|+|++...... .....|.........+ .+..+.+|||||+.+...... .........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-- 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITA-- 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence 4799999999999999999999765322 1223344444433444 567899999999865322111 111111111
Q ss_pred hhcCCceEEEEEEeCCCCCC---HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFS---QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.....|++|+|+|++.+.+ .....++..+...++ ..|+++|+||+|.... ..+.. ...+...
T Consensus 76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~---------~~~~~~~ 140 (168)
T cd01897 76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE---------IEEEEEL 140 (168)
T ss_pred -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH---------HHHhhhh
Confidence 1123589999999985432 223445566655442 2499999999998754 32222 1122221
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+++ ..||+++.|+.+|++.+...+
T Consensus 141 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEEVL------KISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCceE------EEEecccCCHHHHHHHHHHHh
Confidence 122222 368889999999999987654
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=140.66 Aligned_cols=164 Identities=21% Similarity=0.214 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc-EEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ-VVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.|+++|++|+|||||+|+|+|.....+ ..++.|.........+ .+. .+.++||||+.+...........+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~--~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA--DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc--CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 589999999999999999998664211 1122333333333444 444 89999999986432111112222222
Q ss_pred hcCCceEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc-
Q 040649 100 AKDGIHAVLLVFSVRSR-FSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC- 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~- 176 (371)
....+|++++|+|++.+ -+-.. ..+...+....+.....|+++|+||+|.... ...... +..+....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~--------~~~~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFEL--------LKELLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHH--------HHHHHhhCC
Confidence 23457999999999854 22222 3344445443221123599999999997654 222222 22233332
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+++ .|++++.|+.++++.+..+
T Consensus 145 ~~~~~~------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFP------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEEE------EecCCCCCHHHHHHHHHhh
Confidence 222333 5777889999999987654
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=154.76 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=111.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
-|+|||.||||||||+|+|++... .....+.+|.......+.+.+...+.++||||+.............+.+ .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 799999999999999999998764 2223345565555555555345679999999998643222223344443 3
Q ss_pred cCCceEEEEEEeCCC---C-CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 101 KDGIHAVLLVFSVRS---R-FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~---~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
+..+|++++|+|++. . .......++..+......-...|+++|+||+|.... ..+... +..+....
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~--------l~~l~~~~ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEER--------AKAIVEAL 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHH--------HHHHHHHh
Confidence 456699999999871 1 112223444555443211123599999999997644 333322 22233322
Q ss_pred C--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHH
Q 040649 177 D--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECF 221 (371)
Q Consensus 177 ~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~ 221 (371)
+ ..+++ .||+++.++.+|++.|...++.. ...|..+..
T Consensus 305 ~~~~~Vi~------ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~~ 344 (390)
T PRK12298 305 GWEGPVYL------ISAASGLGVKELCWDLMTFIEEN-PREEAEEAE 344 (390)
T ss_pred CCCCCEEE------EECCCCcCHHHHHHHHHHHhhhC-cccCCcccc
Confidence 2 13333 67778899999999999988764 334554444
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=131.17 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|.+|+|||||+|+|+|........ ..+.|.......+.+ .+..+.++||||+.+........ ..+.......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 58999999999999999999975433322 244555554444555 77888999999998764332211 2233344433
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
..+|+++||+|+..+....+..+++.++ . ..|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~----~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--N----KKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--T----TSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--c----CCCEEEEEcC
Confidence 7789999999988655555666767773 1 2499999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=136.47 Aligned_cols=155 Identities=23% Similarity=0.261 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|++|+|||||+|++++....... ...++|.........+ .+..+.++||||+.+.... ...........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence 58999999999999999999987642221 1234444443334444 6678999999998875322 11111222233
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|++++|+|++.+.+..+...+.. .. ..|+++|+||+|.... ... ....+..+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~----~~~vi~v~nK~D~~~~--~~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---PA----DKPIIVVLNKSDLLPD--SEL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---hc----CCCEEEEEEchhcCCc--ccc--------------ccccCCCc
Confidence 4567899999999997676666554443 11 2499999999998754 111 11222334
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
++. .|+.++.|+.+|++.+...+
T Consensus 134 ~~~------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIA------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEE------EECCCCCCHHHHHHHHHHhh
Confidence 444 46667799999999887654
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=138.97 Aligned_cols=171 Identities=15% Similarity=0.264 Sum_probs=105.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~~ 95 (371)
..++|+|+|.+|+|||||+|+|+|...........+.|....... .+..+.||||||+.....+.. .....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 457899999999999999999998752222122233443333322 246789999999875432221 11111222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
........++++++|+|++.+++..+..+...+.. .+ .|+++|+||+|.... ......... +...+..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLKK-----VRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHHH-----HHHHHHh
Confidence 21223345688999999887777766656665543 22 389999999998755 333322221 3334432
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+++ ..|++++.++.++++.+..++++
T Consensus 167 ~~~~~~------~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDDEVI------LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCceE------EEEcCCCCCHHHHHHHHHHHhcC
Confidence 223344 35777889999999999887764
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=137.51 Aligned_cols=157 Identities=21% Similarity=0.252 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc--cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRA--FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||+|+|+|... +.. ....++|.........+..+..+.+|||||... +.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 689999999999999999998542 111 111234444444444442267899999999532 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc--
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC-- 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~-- 176 (371)
..+.++|++++|+|+++.........+..+.. .+. .|+++|+||+|.... ......... +...+...
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 34567899999999985444444444444332 232 389999999997644 222222221 33344331
Q ss_pred -CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 -DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 -~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+..++ ..|++++.|+++|++.+..
T Consensus 139 ~~~~~~------~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 ADAPIF------PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcEE------EEeCCCCcCHHHHHHHHhh
Confidence 22333 3677888999999988753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-17 Score=137.29 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|++|+|||||+|.++|......... ...+........ ...+..+.+|||||+.+.... ....+......
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~ 78 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIY-TDDDAQIIFVDTPGIHKPKKK---LGERMVKAAWS 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEE-EcCCeEEEEEECCCCCcchHH---HHHHHHHHHHH
Confidence 6899999999999999999999875322211 122222222222 224568899999999864322 11223334444
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-C
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-N 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-~ 178 (371)
....+|++++|+|++.+++.....++..+... . .|+++|+||+|..... ..+.+... .+....+ .
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~-~~~~~~~~--------~~~~~~~~~ 144 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS---K--TPVILVLNKIDLVKDK-EDLLPLLE--------KLKELGPFA 144 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh---C--CCEEEEEEchhccccH-HHHHHHHH--------HHHhccCCC
Confidence 56788999999999976666666666666543 1 3999999999987331 33333322 2222111 2
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+++ ..|++.+.++.+|++.+.+.
T Consensus 145 ~~~------~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 145 EIF------PISALKGENVDELLEEIVKY 167 (168)
T ss_pred ceE------EEEeccCCChHHHHHHHHhh
Confidence 223 35666789999999988654
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=137.28 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.++|+++|.+|+|||||+|+|+|........ ..+.+.......... .+..+.+|||||+.+..........-......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3689999999999999999999876432221 122333332233333 66778999999987653211111110111112
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....++|++++|+|++.+.+......+..+... . .|+++|+||+|.........+.+... +...+...+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence 335678999999999877776655554444321 2 49999999999875521222222221 2222221111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
......|++.+.++.++++.+..+
T Consensus 150 -----~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 -----APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -----CceEEEeccCCCCHHHHHHHHHHh
Confidence 122346788889999999887654
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-17 Score=136.54 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=103.3
Q ss_pred EEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcC
Q 040649 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKD 102 (371)
Q Consensus 23 ~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~ 102 (371)
+++|.+|+|||||+|.|++....... ...++|.........+ .+..+.++||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 57999999999999999987642221 2234454444444554 678899999999987422 233334444444556
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-ceE
Q 040649 103 GIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-RWV 181 (371)
Q Consensus 103 ~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-r~~ 181 (371)
.+|++++|+|+.++++..+..++..++.. + .|+++|+||+|.... ... ...+...+. +++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~------------~~~~~~~~~~~~~ 136 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDE------------AAEFYSLGFGEPI 136 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHH------------HHHHHhcCCCCeE
Confidence 78999999999877777666666666643 2 499999999998754 211 011122222 333
Q ss_pred eecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 182 LFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 182 ~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..|++++.|+.+|++.+.+.
T Consensus 137 ------~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 ------PISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------EEecccCCCHHHHHHHHHhh
Confidence 36777889999999988654
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=154.84 Aligned_cols=183 Identities=21% Similarity=0.227 Sum_probs=129.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|+|++|||||+|+|+|....-.. ...++|.+.....+.+ +++.+.+|||.|+-.-..-.+.+..--....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 3589999999999999999999999873322 2345666666666776 8999999999998753322111100000111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+...+|++++|+|++.+++..|...+..+.+. | +++++|+||||.+..+..+.+.+... +...+...
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g----~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l- 323 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-G----RGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFL- 323 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-C----CCeEEEEEccccCCchhhHHHHHHHH-----HHHHhccc-
Confidence 2234566999999999999999999998888764 2 49999999999987644556655544 45444432
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYT 217 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~ 217 (371)
.|-.....||+++.++..|++.+..+........-+
T Consensus 324 ----~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~T 359 (444)
T COG1160 324 ----DFAPIVFISALTGQGLDKLFEAIKEIYECATRRIST 359 (444)
T ss_pred ----cCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCH
Confidence 333344579999999999999999888876553333
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=138.12 Aligned_cols=126 Identities=17% Similarity=0.290 Sum_probs=83.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|++|+|||||+|.|+|...........+.|..+..+. . + ..+.+|||||+......... ...+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~-~~~~liDtpG~~~~~~~~~~-~~~~~~~ 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V-N-DGFRLVDLPGYGYAKVSKEE-KEKWQKL 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e-C-CcEEEEeCCCCccccCChhH-HHHHHHH
Confidence 3557999999999999999999998752222112233454444332 2 2 36899999998765332211 1222221
Q ss_pred Hh---hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 97 IG---MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~---~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+. .....+|++++|+|++.+++..+...+..+... ..|+++|+||+|....
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence 11 223456899999999988888887776666542 2499999999998754
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=147.51 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|||.||||||||+|+|++... .....+.+|..+....+.+.++..+.++||||+.........+...+.+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 4689999999999999999998653 222334556655555555545678999999999864333233444444443
Q ss_pred hcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
..++++|+|+|+++.-+..+ ..+...|......-..+|+++|+||+|.... ...... .+.......+.
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~-------~~~~~~~~~~~ 303 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREK-------RAALELAALGG 303 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHH-------HHHHHHHhcCC
Confidence 45699999999984333333 2334444443221123599999999997654 221110 01222222233
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+++ .||+++.++++|++.+...+...
T Consensus 304 ~i~~------iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 304 PVFL------ISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHHHhh
Confidence 3433 67788899999999998877653
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-17 Score=144.91 Aligned_cols=168 Identities=20% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC----------------CCCCccceeEEEEeEE-eeCCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS----------------AGSSAITKTCEMKTTV-LKDGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~i~liDTPG~~ 80 (371)
+.++|+++|+.|+|||||+++|++....... ....+.|.......+. ...+..+++|||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3579999999999999999999854421110 0012344444444444 1278899999999954
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+ .... +..+...+|++|+|+|+..++.......+..+... . .|+++|+||+|.. . ..+.+.
T Consensus 82 ~-------f~~~----~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~---~--~p~ivvlNK~D~~-~--~~~~~~ 142 (188)
T PF00009_consen 82 D-------FIKE----MIRGLRQADIAILVVDANDGIQPQTEEHLKILREL---G--IPIIVVLNKMDLI-E--KELEEI 142 (188)
T ss_dssp H-------HHHH----HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT---T---SEEEEEETCTSS-H--HHHHHH
T ss_pred c-------eeec----ccceecccccceeeeeccccccccccccccccccc---c--cceEEeeeeccch-h--hhHHHH
Confidence 3 2233 33345567999999999988888888888887654 2 2899999999988 2 445444
Q ss_pred hcccCCchHH-HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLK-EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~-~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+ +. .++...+..-..+.+..+.|+.++.|+..|++.+...++
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 443 33 343333221000011123688899999999999988775
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=138.75 Aligned_cols=164 Identities=24% Similarity=0.245 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++.++|+|+|++|||||||+|+|++...+... ....|..+......+.+...+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 34579999999999999999999998643221 1223333333344442334899999999865321 1122222222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+ ..+..+|++++|+|++.+.+.... .+...+....... .|+++|+||+|.... .... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH------------HHhhc
Confidence 2 234578999999999865544433 3334444332222 499999999998755 2221 11111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+++ ..|++++.|+.++++.+...
T Consensus 178 ~~~~~~------~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAV------FISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCceE------EEEcCCCCCHHHHHHHHHhh
Confidence 122233 36778889999999987653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=152.57 Aligned_cols=176 Identities=21% Similarity=0.232 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|+|||||+|+|+|........ ..++|.......+.+ ++..+.++||||+............-.....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999987533222 234455444444444 7788999999998764332221111111112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|++.+++..+...+..+... + .|+++|+||+|.... .....+... +...+...
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~- 316 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFL- 316 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhcccc-
Confidence 2345677999999999988998888777666542 2 499999999998743 333332221 22222211
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+.+....||+++.++.+|++.+........
T Consensus 317 ----~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 317 ----DYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred ----cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 1222334788899999999999988776543
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-16 Score=152.44 Aligned_cols=178 Identities=23% Similarity=0.262 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|.+|+|||||+|+|+|....... ...++|.......+.. ++..+.+|||||+............-.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3478999999999999999999998743221 1234444444444444 6778999999998764332211111111112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|+..+++..+...+..+... + .|+++|+||+|.... ....+.+... +...+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence 2345678999999999988998887776666542 2 499999999998722 1334443332 333332211
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+.+....||+++.++.++++.+.........
T Consensus 318 -----~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 318 -----FAPIVFISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred -----CCceEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 1122347888999999999999988766443
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=138.34 Aligned_cols=165 Identities=21% Similarity=0.136 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCC--------------CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES 86 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 86 (371)
+|+|+|.+|+|||||+|+|++......... ..+.|.........+ .+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999998765432211 012333333333444 5678999999997541
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 87 EYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 87 ~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
......++..+|++++|+|+..+........+..+.. ...|+++|+||+|.... ..+......
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 1122233446799999999987776666666655553 12499999999998854 233222221
Q ss_pred chHHHHHHhcCCc-----e---EeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 167 KPLKEILQLCDNR-----W---VLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 167 ~~l~~~~~~~~~r-----~---~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+...+...+.. . ....+....|++++.|+.++++.+...++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 33333322210 0 01122244688889999999999887764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=154.30 Aligned_cols=160 Identities=20% Similarity=0.270 Sum_probs=115.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|.|+|...... ...+++|.........+ .+..+.+|||||+... .......+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999999774211 22356676676666666 7889999999998643 233445555666666
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-c
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-R 179 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-r 179 (371)
...+|++++|+|+..+++..+..+..+++.. + .|+++|+||+|..... .. ...+ ...+. .
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~~-~~------------~~~~-~~lg~~~ 136 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKED-AV------------AAEF-YSLGFGE 136 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCccc-cc------------HHHH-HhcCCCC
Confidence 7788999999999988898888888888753 2 4999999999976441 11 1111 12221 2
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++ ..||.++.|+.+|++.+...+..
T Consensus 137 ~~------~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PI------PISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eE------EEeCCcCCChHHHHHHHHHhcCc
Confidence 33 36788889999999999877654
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=141.49 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc-----CCCCCccceeEEEEeEEe-eCC--cEEEEEeCCCCCCCCcchHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA-----SAGSSAITKTCEMKTTVL-KDG--QVVNVIDTPGLFDSSAESEYV 89 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~-----~~~~~~~t~~~~~~~~~~-~~~--~~i~liDTPG~~~~~~~~~~~ 89 (371)
-..+++++|.+|.|||||||+|++...... .......|.......... .+| ..++|||||||+|.-. +...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vd-ns~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVD-NSNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccc-cccc
Confidence 347999999999999999999998855322 111111133333333333 122 2789999999998632 2333
Q ss_pred HHHHHHHHhh---------------hc--CCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 90 SKEIAKCIGM---------------AK--DGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 90 ~~ei~~~~~~---------------~~--~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+.-+..++.. .. ..+|++||.++.. +++.+.|...++.+...+ ++|.|+.|.|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence 3333333321 11 3799999999765 679999998888887642 9999999999998
Q ss_pred CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcch
Q 040649 152 DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTK 188 (371)
Q Consensus 152 ~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~ 188 (371)
. ..+..+... +...+..++.+++.|+....
T Consensus 173 ~--~El~~~K~~-----I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 173 K--DELNQFKKR-----IRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred H--HHHHHHHHH-----HHHHHHHcCcceecCCCCcc
Confidence 8 777766665 78888888999998876643
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=149.48 Aligned_cols=167 Identities=19% Similarity=0.173 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
.|+|||.|+||||||+|+|++... .....+.+|..+....+.+.++..++++||||+.........+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 799999999999999999998764 222344556666655555534778999999999753322223344444443
Q ss_pred cCCceEEEEEEeCCCC---CC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 101 KDGIHAVLLVFSVRSR---FS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~---~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++++|+|+|++.. -. .....+...|.........+|+++|+||+|+... ... +..+....
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~------------l~~l~~~l 300 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EEN------------LEEFKEKL 300 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHH------------HHHHHHHh
Confidence 355999999999632 11 1223344455543222234699999999996322 111 22233322
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+..+++ .||.++.|+++|++.+...+....
T Consensus 301 ~~~i~~------iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 301 GPKVFP------ISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCcEEE------EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 333333 577788999999999998887654
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-16 Score=134.04 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
++|+|+|++|+|||||+|+|++...... ...+.|........... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 3699999999999999999997765222 22334443333333331 367899999999643 11122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH-Hhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL-QLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~-~~~ 176 (371)
......+|++++|+|++++........+..+.. .+ .|+++|+||+|........+...+.. +.... ...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 137 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEW 137 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccccHHHHHHHHHH-----hhccccccc
Confidence 233457799999999986655555555555543 22 39999999999764421222221111 00000 011
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..+ .....|+.++.|+.+|++.+..+..
T Consensus 138 ~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 138 GGDV----QIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcC----cEEEeecccCCCHHHHHHHHHHhhh
Confidence 1111 1234677888999999999876643
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.6e-16 Score=152.17 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.||+|||||+|.|+|... .....+++|.+.......+ .+..+.++|.||.++.+.-+ .+|...+-..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S---~DE~Var~~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYS---EDEKVARDFL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCC---chHHHHHHHH
Confidence 5799999999999999999999987 4456788998877777777 78889999999999765432 1222222223
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|+++-|+|++ .+...-.-+++.+. +| .|+++++|++|.....+-.+ ....+-+..|.+
T Consensus 78 l~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g----~p~ilaLNm~D~A~~~Gi~I----------D~~~L~~~LGvP 140 (653)
T COG0370 78 LEGKPDLIVNVVDAT-NLERNLYLTLQLLE--LG----IPMILALNMIDEAKKRGIRI----------DIEKLSKLLGVP 140 (653)
T ss_pred hcCCCCEEEEEcccc-hHHHHHHHHHHHHH--cC----CCeEEEeccHhhHHhcCCcc----------cHHHHHHHhCCC
Confidence 367889999999998 45544444444443 33 39999999999775532222 245566666888
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK 225 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 225 (371)
+++ .+|.++.|+++|+..+......... ++..++-+.++
T Consensus 141 Vv~------tvA~~g~G~~~l~~~i~~~~~~~~~-~~~~~y~~~ie 179 (653)
T COG0370 141 VVP------TVAKRGEGLEELKRAIIELAESKTT-PREVDYGEEIE 179 (653)
T ss_pred EEE------EEeecCCCHHHHHHHHHHhcccccc-ccccccchHHH
Confidence 887 5677889999999999988777655 44444333444
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-16 Score=145.64 Aligned_cols=167 Identities=20% Similarity=0.228 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|||.+|||||||+|+|++... .....+.+|..+....+.+.+...+.|+||||+.........+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 4689999999999999999998753 222233445555555555533478999999999754322222344444443
Q ss_pred hcCCceEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 100 AKDGIHAVLLVFSVRSR---FSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++++|+|+|++.. -+-.+ ..+...+.........+|+++|+||+|.... ...... .+.+...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~--------~~~l~~~ 301 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAEL--------LKELKKA 301 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHH--------HHHHHHH
Confidence 345999999999842 11112 2233334433221123599999999998754 323222 2223333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..+++ .||+++.++++|++.+...+
T Consensus 302 ~~~~vi~------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFP------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEE------EEccCCcCHHHHHHHHHHHh
Confidence 3333333 67788899999999987654
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-16 Score=150.93 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|||.+|||||||+|+|++... .....+.+|.......+.+ .+..++|+||||+.+.......+...+.+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrh--- 233 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRH--- 233 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHH---
Confidence 4789999999999999999998754 2223345565555555555 667899999999976432222333344443
Q ss_pred hcCCceEEEEEEeCCCCC----CHHHHH-HHHHHHHHhC---------CCCCCeEEEEEeCCCCCCCchhhHHHHhcccC
Q 040649 100 AKDGIHAVLLVFSVRSRF----SQEEEA-AVHRLQTLFG---------KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC 165 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~----~~~~~~-~l~~l~~~~~---------~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~ 165 (371)
+..+|++|+|+|++... ...+.. +...|..+.. ....+|+++|+||+|.... ..+.+.+
T Consensus 234 -ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l---- 306 (500)
T PRK12296 234 -IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV---- 306 (500)
T ss_pred -HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH----
Confidence 34569999999996311 111222 2223333221 1123599999999997643 2222222
Q ss_pred CchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 166 PKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 166 ~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+...+.++++ +|+.++.++.+|+..+..++....
T Consensus 307 ----~~~l~~~g~~Vf~------ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 307 ----RPELEARGWPVFE------VSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred ----HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHhhh
Confidence 2223333334444 577788999999999998887653
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=143.32 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCC------CCccceeEEEEeEEe-eCC--cEEEEEeCCCCCCCCcchHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAG------SSAITKTCEMKTTVL-KDG--QVVNVIDTPGLFDSSAESEYV 89 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~i~liDTPG~~~~~~~~~~~ 89 (371)
..+|+|+|++|+|||||+|+|++...+..... ....|.......... .+| ..++|||||||++... +...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence 36899999999999999999999887544221 112233233222222 134 3699999999998643 3334
Q ss_pred HHHHHHHHhh------------------hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 90 SKEIAKCIGM------------------AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 90 ~~ei~~~~~~------------------~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
+..+..++.. ....+|+++|+++.+ .++...+..+++.+.. . .|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcC
Confidence 4444432211 112589999999887 4688888877777764 2 3999999999998
Q ss_pred CCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcc
Q 040649 151 EDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKT 187 (371)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~ 187 (371)
.. ..+..+... +...+...+.+++.|....
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCCCc
Confidence 65 445544443 7778888888888887643
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=141.90 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=119.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+++|.||+|||||||+|++....+. +..++++....+.....++..++++||||+++....+.. +...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----~r~~ 110 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----HRQL 110 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----HHHH
Confidence 3557889999999999999999996554222 111222222222222236789999999999986443333 4444
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc----------hhhHHHHhcccCC
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN----------EKTLEDYLGLECP 166 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~----------~~~l~~~l~~~~~ 166 (371)
+....+..|++++++++.+|.-..+..++..+.-.... +++++++|.+|...+- ...+.+++.. .-
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~ 186 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KA 186 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HH
Confidence 44455667999999999988777777777776654332 5999999999987541 1234444432 11
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHH
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNEC 220 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~ 220 (371)
..+..++. +..+....+...+.|++.|...+..+++.+...+....+
T Consensus 187 ~~~~~~~q-------~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 187 EALGRLFQ-------EVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred HHHHHHHh-------hcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhh
Confidence 11222222 222222334566799999999999999977665555444
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-16 Score=147.41 Aligned_cols=162 Identities=21% Similarity=0.175 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+++|.+|+|||||+|+|+|...+.. ...+.|.++....+.++++..+.++||||+.... +. .....+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~-~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PH-ELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC-CH-HHHHHHHHHH
Confidence 347899999999999999999999875322 1233444444455555467799999999984321 11 1222233322
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEA-AVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+..+|++|+|+|++++.+..+.. +...+... +. ...|+++|+||+|.... ..+. .... .
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~------------~~~~-~ 325 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIE------------RLEE-G 325 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHH------------HHHh-C
Confidence 2356789999999998665544432 33344433 31 12499999999997643 2221 1111 0
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+ ...||+++.|+++|++.+...
T Consensus 326 ~~~~------i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEA------VFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCE------EEEEccCCCCHHHHHHHHHhh
Confidence 1122 336888899999999988654
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-16 Score=152.80 Aligned_cols=164 Identities=22% Similarity=0.196 Sum_probs=113.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+|+|++|+|||||+|+|+|...... ...+++|.........+ .+..+.+|||||+... .......+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 447899999999999999999998764222 22445666665555555 7788999999998632 122334455555
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|++.+.+..+..+...+... ..|+++|+||+|..... ... ..... .+
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~~-~~~------------~~~~~-~g 172 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERGE-ADA------------AALWS-LG 172 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCccc-hhh------------HHHHh-cC
Confidence 5567788999999999988887777777777642 24999999999975331 111 11111 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ....+||+++.|+.+|++.+...+..
T Consensus 173 ~~-----~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG-----EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CC-----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 11 11247888999999999999876654
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.5e-14 Score=138.75 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=77.6
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..++++||||+..+.. ....+.+.. ....+|+||||+|++..++..+..+++.+... +.. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4688999999986421 112233333 46677999999999877888888888888753 321 29999999999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+......+.... .+...+.... +.|....++||+++.++..|++.|..
T Consensus 301 l~dreeddkE~Lle-----~V~~~L~q~~---i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRA-----LISGTLMKGC---ITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHH-----HHHHHHHhcC---CCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 86432111222211 1222222221 13444556889999999999988764
|
|
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-16 Score=134.08 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=94.3
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC-CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcC
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKD 102 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~ 102 (371)
++|++|+|||||+|+|+|...... ...++|..+......+ + +..+.++||||+.+...........+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA--NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc--CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 589999999999999999875211 2233444444444444 5 7899999999986432111112222222 244
Q ss_pred CceEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhCC-----CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 103 GIHAVLLVFSVRSRF-----S-QEE-EAAVHRLQTLFGK-----KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 103 ~~d~vl~v~d~~~~~-----~-~~~-~~~l~~l~~~~~~-----~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
++|++++|+|+..+. . ..+ ..+...+...... ....|+++|+||+|.... ....... ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~-------~~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEEL-------VR 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHH-------HH
Confidence 679999999998542 2 222 2233333322111 023599999999998755 3332221 01
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
......+..++ ..|+.++.|+.+|++.+..+
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVV------PISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEE------EEehhhhcCHHHHHHHHHhh
Confidence 11122222333 36778889999999987654
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=130.51 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|++|+|||||+|++++........ +.++.......... .....+.++||||... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 379999999999999999999887643211 11222222222222 1234788999999532 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCC---CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGK---KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~---~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
..+.++|++|+|+|++++-+-. ...++..+....+. ....|+++|.||+|..........+ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 4567889999999998543222 23344555544432 1235999999999976321111111 222333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+.+++. .|++++.|+.++++.+.+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFE------TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 33333433 57778899999999987543
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.3e-16 Score=137.56 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEee--------------------------CC----
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVLK--------------------------DG---- 68 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~---- 68 (371)
.+|+++|++|+|||||+.+|+|... ........+.|..+.+..+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3799999999999999999998732 2121112233333332222221 02
Q ss_pred --cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 69 --QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-FSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 69 --~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
..++||||||.. . +...+......+|++++|+|++.+ ........+..+.. .+. .|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-------~----~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-------I----LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-------H----HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 678999999942 1 333344445577999999999853 33334445544432 232 37999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|+|.... ......+.. ++..+...... .......||+++.|+++|++.+.+.++.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAE---NAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhccccC---CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9998754 333322222 33333321100 1112336888899999999999876654
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.3e-16 Score=139.86 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=94.4
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHH
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVS 90 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~ 90 (371)
+|+-+...++|+|.|.||+|||||+++|++... ...+++.+|.......+.. ++..+.+|||||+.|-..... .+.
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHH
Confidence 566666778999999999999999999999886 4445556665555555554 667999999999998654332 122
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVR--SRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+..-.+. .-.++|+|++|.+ ++++-++ ...+..++..|. .|+++|+||+|..+.
T Consensus 238 ~qAi~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 238 RQAILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 22222222 1237899999998 5666554 667788888887 399999999998755
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=133.86 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=92.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCC--CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||+|.|++......+.. ....|.......+.+ ++..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 489999999999999999987543211111 112233333334444 678899999999653 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+.++|++++|+|++.+-+. .....++...+.. ....|+++|+||+|.... ....+.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 456788999999998743211 1122233322221 112499999999997644 222211110 11111111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+...+ .....|++++.|++++++++.
T Consensus 140 ~~~~~---~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRDC---LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence 11111 122468889999999998875
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=149.64 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=112.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|+|||||+|+|+|...... ....++|.......+.+ ++..+.+|||||+....... ...+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 357999999999999999999999875322 12344454444444555 77788999999985321111 111222221
Q ss_pred --hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 --GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 --~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++++|+|++.+.+..+...+..+... . .|+++|+||+|+... .....+... +...+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~ 353 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA---G--RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ 353 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence 2345688999999999988888877666655431 2 499999999998753 211111111 1111111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.. +.+....||+++.|+.+|+..+...+.....
T Consensus 354 ~~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 354 VP-----WAPRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 11 1122347899999999999999988876544
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=132.25 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++...... ..+..+.........+ ++ ..+.++||||....... ...++....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 3799999999999999999998765322 1111111121122333 44 36789999997653221 122222223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH-
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ- 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~- 174 (371)
..++..+|++|+|+|++++.+-.. ..++..+..... .....|+++|.||+|.........+ .++.+..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~---------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRH---------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHH---------HHHHHHHH
Confidence 344578899999999985433222 223334443321 0122499999999997543111111 1222222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
..+..++ ..||+++.|+.+|+..+...+-.++.
T Consensus 146 ~~~~~~~------e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 146 SWKCGYL------ECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred hcCCcEE------EecCCCCCCHHHHHHHHHHHhhccCC
Confidence 1222333 36888899999999998866665544
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=127.76 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||+|++++...... ..+..+.........+ ++ ..+.++||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 799999999999999999998876332 1222232233333333 33 3588999999432 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+....+.. .|+++|+||+|.........+. ...+....+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEE---------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHH---------HHHHHHHhC
Confidence 34567899999999985422222 23444444433322 4999999999985331112211 222333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++. .|++++.|+.+|+..+.+.
T Consensus 137 ~~~~~------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIE------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHh
Confidence 33333 5677889999999988754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=133.04 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH----HHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE----YVSKEI 93 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~----~~~~ei 93 (371)
...+|+++|++|+|||||+|+|+|.... ... .+++|.... .+.+ . .+.+|||||++....... .....+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~-~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGK-RPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3478999999999999999999987742 221 223333222 2222 2 689999999865432221 122222
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFS-----------QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
..++......++++++|+|.+.... ..+..++..+.. .. .|+++|+||+|.........
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~p~iiv~NK~Dl~~~~~~~~----- 150 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LG--IPPIVAVNKMDKIKNRDEVL----- 150 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cC--CCeEEEEECccccCcHHHHH-----
Confidence 2223333456789999999863211 122333444332 12 39999999999765411111
Q ss_pred ccCCchHHHHHHhcCC--ceEee-cCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 163 LECPKPLKEILQLCDN--RWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~--r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..+....+. .+..+ ......||+++ |+++|++.+.+.+...
T Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 151 -------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred -------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 122222221 10000 01234788999 9999999998776653
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=130.42 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=97.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
|+++|.+|+|||||++.+++........ .|.......... .+..+.++||||.... ......++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~----pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV----PTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc----ccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 7899999999999999999775432211 111111222333 5668999999996431 22223456
Q ss_pred CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceE
Q 040649 102 DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV 181 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~ 181 (371)
.++|+++||+|++++.+-. ....++..........|+++|.||.|.... .......... .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~--~~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~---~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLP--LARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKEL---ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHH--HHHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHHh---CChhhcCCCceEEE
Confidence 6789999999998543211 122233333321223599999999997654 2333221110 02333333344444
Q ss_pred eecCcchhhHhhHHhHHHHHHHHH
Q 040649 182 LFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 182 ~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+.....|+.+++|+.++++.+.
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHHh
Confidence 455667778999999999998764
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=129.33 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||++.+++........ +..+........... ....+.++||||... +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999999876522211 111111222222221 124688999999532 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........+ ....+....+
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~---------~~~~~~~~~~ 137 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSE---------RGRQLADQLG 137 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHH---------HHHHHHHHcC
Confidence 45678999999999984322111 23344444333222 489999999997644211111 1223333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..++. .|++++.|+.+|++.+...+.
T Consensus 138 ~~~~~------~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 138 FEFFE------ASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 33333 577888999999999876654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=126.93 Aligned_cols=163 Identities=20% Similarity=0.309 Sum_probs=98.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch---HHHHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES---EYVSKEIAKCIG 98 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~ei~~~~~ 98 (371)
|+++|++|+|||||+|.|++...........+.|..... .. ....+.++||||+.+...+. ......+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 799999999999999999954332222222333332222 22 23388999999988753321 11111112222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH--hc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ--LC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~--~~ 176 (371)
.....++++++++|.+.+.+......+.++... + .|+++|+||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233456889999999866666666666776653 2 399999999998754 322222221 233332 22
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++++ .|++++.++.++++.+..+
T Consensus 145 ~~~~~~------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIIL------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEE------EecCCCCCHHHHHHHHHHh
Confidence 234444 4566778999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-16 Score=134.73 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC---ccccC--CCCCccceeEEEEeEEee-------------CCcEEEEEeCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR---AFKAS--AGSSAITKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~---~~~~~--~~~~~~t~~~~~~~~~~~-------------~~~~i~liDTPG~~~ 81 (371)
.+|+++|++|+|||||++++++.. .+... ....+.|.........+. .+..+++|||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999999741 11110 011233444443333331 256899999999632
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
. ..........+|++++|+|+..+.+..+...+.... ..+ .|+++|+||+|.... ......+
T Consensus 81 -------~----~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -------L----IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -------H----HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 2 222223345679999999998666555544444332 222 399999999998744 2222222
Q ss_pred cccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 162 GLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ....+...+... +.+++ ..|++++.|+.+|++.+...+..
T Consensus 143 ~~-~~~~l~~~~~~~~~~~~~vi------~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFKNSPII------PVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HH-HHHHHHHHHHhcCcCCCCEE------EEeccCCCCHHHHHHHHHhcccc
Confidence 21 001122222211 12233 36888899999999999876653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=128.68 Aligned_cols=156 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCC
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDG 103 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~ 103 (371)
|+|.+|+|||||+|+++|...... ..+++|..+....+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999999864322 2244455555555555 567899999999876432211 11122211111 58
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee
Q 040649 104 IHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF 183 (371)
Q Consensus 104 ~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f 183 (371)
+|++++|+|++.+ . .....+..+.. . ..|+++|+||+|.... ..+.. ....+....+..+++
T Consensus 75 ~d~vi~v~d~~~~-~-~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~--~~~~~--------~~~~~~~~~~~~~~~- 136 (158)
T cd01879 75 PDLIVNVVDATNL-E-RNLYLTLQLLE-L----GLPVVVALNMIDEAEK--RGIKI--------DLDKLSELLGVPVVP- 136 (158)
T ss_pred CcEEEEEeeCCcc-h-hHHHHHHHHHH-c----CCCEEEEEehhhhccc--ccchh--------hHHHHHHhhCCCeEE-
Confidence 8999999999842 2 22233333332 1 2499999999998654 22211 122333333444443
Q ss_pred cCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 184 DNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 184 ~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.|+..+.++.++++.+....
T Consensus 137 -----iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 -----TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -----EEccCCCCHHHHHHHHHHHh
Confidence 56777899999999887653
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=133.69 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+|+++|+.++|||||+++|++...... .....+.|.......+.+ .+..++++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 47899999999999999999986411000 001234555554444444 677899999999642
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+...+......+|++++|+|+..++...+...+..+... +. .++|+|+||+|....
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~~ 133 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVDD 133 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCCc
Confidence 333334445678999999999877888777777776653 32 148899999998743
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=145.58 Aligned_cols=163 Identities=24% Similarity=0.293 Sum_probs=115.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC-CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG-SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+.+|+++|+|++|||||+|+|+|.+. ..++ -+++|.+.-...+.. +|.++.++||.|+-++. +.+.+.=..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~---d~VE~iGIe 288 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD---DVVERIGIE 288 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc---cHHHHHHHH
Confidence 4578999999999999999999999987 3333 345566666666666 99999999999999753 333333333
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
........+|.+|||+|++.+.+..+...+. .... .+|+++|.||.|+.... .... + .+..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~--~~~~i~v~NK~DL~~~~--~~~~---------~-~~~~- 349 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE----LLPK--KKPIIVVLNKADLVSKI--ELES---------E-KLAN- 349 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH----hccc--CCCEEEEEechhccccc--ccch---------h-hccC-
Confidence 4445567789999999999777777777666 1222 24999999999988661 1110 1 0110
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..+ ...|++++.|++.|.+.+...+...
T Consensus 350 -~~~~------i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 -GDAI------ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -CCce------EEEEecCccCHHHHHHHHHHHHhhc
Confidence 1112 2368888999999999999887765
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=131.54 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++++.+... .. ...|.........+ .+..+.++||||.... .......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 489999999999999999998743 21 12233233333444 6678999999996532 1223334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH---h
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ---L 175 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~---~ 175 (371)
+.++|+++||+|++++-+-. ....++...+... ...|+++|+||.|.... .+.++. ..++. .
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~~~~~ 130 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEM---------TELLSLHKL 130 (169)
T ss_pred hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHH---------HHHhCCccc
Confidence 56789999999998432111 1222333332211 12499999999997543 222221 11211 1
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..+.+.| ...||+++.|+.++++++.+.+..+
T Consensus 131 ~~~~~~~~---~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 131 CCGRSWYI---QGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cCCCcEEE---EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 11122222 1358899999999999998766654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=128.65 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++.+++........ +..+.......+.+ ++ ..+.++||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--STIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccc--cCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHH
Confidence 3789999999999999999999876532211 11112222222333 33 3678999999432 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........+ ....+...
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKE---------EGEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHH---------HHHHHHHH
Confidence 2344567899999999974432222 22333344332222 499999999998743211211 12334443
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++ ..|++++.++.+++..+.+.+.
T Consensus 138 ~~~~~~------~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 138 YGIKFL------ETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333333 3677788999999998876553
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=126.64 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||++.+++...... .....+.........+ ++ ..+.++||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 3799999999999999999998775222 1122222222223333 33 3688999999432 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+... ..++..+....+.. .|+++|+||+|.........+ ....+...+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~~~~~~---------~~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQRQVSRE---------EAEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccccCCCHH---------HHHHHHHHc
Confidence 444567899999999985433322 22333333333223 499999999997643111111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++. .|+.++.|+.++++.+...+.
T Consensus 136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFE------TSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 544443 566678999999999887653
|
Rab GTPases are implicated in vesicle trafficking. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-15 Score=149.06 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+++|.+|+|||||+|.|+|...... ....++|.........+ .+..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5799999999999999999999875222 22345666666666666 77899999999998632 1233444454555
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
++..+|++|||+|++.+++..+..+..+++.. + .|+++|+||+|.... .... .... ..+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~-~~~~------------~~~~-~lg~- 136 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDE-EADA------------YEFY-SLGL- 136 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccc-hhhH------------HHHH-hcCC-
Confidence 66788999999999988888888887877764 2 499999999995432 0111 1111 1121
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
......|+.++.|+.+|++.+..
T Consensus 137 ----~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 137 ----GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence 11223577788999999998876
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=149.40 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|.|+|..... ....++|.+.....+.+ ++..+.++||||.++...... ...++......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 689999999999999999999987632 33466776655555555 677899999999987543111 11122222222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|+++ +.. .......+.+. + .|+++|+||+|..+. ..... .++.+....+.
T Consensus 81 l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~--~~i~i--------d~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDASN-LER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIRI--------DIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCCc-chh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc--cCcHH--------HHHHHHHHhCC
Confidence 23457899999999984 332 22333344432 2 499999999997644 22211 13334444565
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++++ .|+.++.|+++|++.+.....
T Consensus 144 pVvp------iSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 144 PVIP------LVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CEEE------EEeecCCCHHHHHHHHHHhhh
Confidence 6665 566678999999999987764
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=128.23 Aligned_cols=157 Identities=18% Similarity=0.095 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|.+|+|||||++.+++....+......+.+ ........ .....+.++||||... +.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAKFEGKTILVDFWDTAGQER-----------FQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE--EEEEEEEECCEEEEEEEEeCCCchh-----------hhhhhH
Confidence 379999999999999999998766432211111111 11112222 1233678999999542 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++.++|++|+|+|++++.+-.+ ..++..+....+ . .|+++|+||+|.... . ..+ ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~--~-~~~---------~~~~~~~~~ 132 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS--V-TQK---------KFNFAEKHN 132 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh--H-HHH---------HHHHHHHcC
Confidence 45678899999999985544332 344555554322 2 499999999996422 1 110 112222223
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+++ ..|++++.|+.++++.+...+..
T Consensus 133 ~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 133 LPLY------YVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2333 25788899999999998765543
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-15 Score=126.75 Aligned_cols=159 Identities=19% Similarity=0.141 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|++++...........+.+ .......+ ..+..+.+|||||... +.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAA--FLTQTVNLDDTTVKFEIWDTAGQER-----------YRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEeCCchHH-----------HHHHHH
Confidence 589999999999999999999887643211111111 11122222 1234688999999421 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++++|+|++++-+-. ...++..+....... .|+++|.||+|.......... ....+....+
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 137 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTE---------EAQEYADENG 137 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHH---------HHHHHHHHcC
Confidence 4456789999999997432211 234445555544333 489999999997633111221 1233444444
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..++ ..|++++.|+.++++.+...+
T Consensus 138 ~~~~------~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFF------ETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHHHh
Confidence 3333 357778899999999987654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=127.62 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||++.+++...... ..+..+.......... .+ ..+.++||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 6899999999999999999998765322 1122222222223333 33 3678999999432 22222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++++-+-.. ..++..+....... .|+++|.||+|.......... ....+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYS---------EAQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHH---------HHHHHHHHc
Confidence 344567899999999984322111 22333343332222 499999999997644111111 123333433
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++. .|++++.|+.+++..+...+.
T Consensus 138 ~~~~~~------~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GIPFLE------TSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCeEEE------EECCCCcCHHHHHHHHHHHHH
Confidence 444443 577788999999998876553
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=130.97 Aligned_cols=155 Identities=18% Similarity=0.237 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|++|+|||||++++++..... . ..|.........+ ++..+.++||||... +...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~--~---~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 74 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT--I---SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPY 74 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 345799999999999999999999874321 1 1122222233334 567889999999542 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++.+-+-.. ...++...+.. ....|+++|+||+|.... ...++ +...+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~~~~ 141 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGA--LSEEE---------IREALE 141 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHH---------HHHHhC
Confidence 3344668899999999985422111 11222222211 122499999999997644 21111 122221
Q ss_pred hc---CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 175 LC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 175 ~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.. ...+.. ...||+++.|+.++++.+.
T Consensus 142 ~~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 142 LDKISSHHWRI----QPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCCCceEE----EeccCCCCcCHHHHHHHHh
Confidence 11 111112 2468889999999998864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=140.80 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCC------CCccceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG------SSAITKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~ 90 (371)
.+|+|+|.+|+|||||||+|++......... ....+........... ++ ..++|||||||++. ..+...+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~-i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN-IDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS-STHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc-ccchhhh
Confidence 6899999999999999999999876544210 1111222222222221 22 37899999999975 3334444
Q ss_pred HHHHHHHhhh-----------------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIAKCIGMA-----------------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~~~~~~~-----------------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+..++... -..+|++||+++.+ +++.+.|...++.|... .++|.|+.|+|.+..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccCH
Confidence 4444444211 24689999999986 67999998888777654 399999999999987
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcc
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKT 187 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~ 187 (371)
..+..+... +..-+...+.+++.|....
T Consensus 158 --~el~~~k~~-----i~~~l~~~~I~~f~f~~~~ 185 (281)
T PF00735_consen 158 --EELQAFKQR-----IREDLEENNIKIFDFPEDD 185 (281)
T ss_dssp --HHHHHHHHH-----HHHHHHHTT--S-------
T ss_pred --HHHHHHHHH-----HHHHHHHcCceeecccccc
Confidence 777766655 7778888888888776553
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-15 Score=145.63 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+.+|+++|.+|+|||||+|+|+|....... ...++|.......+.+ ++..+.++||||+.++. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 3478999999999999999999997642221 1234454444444555 77889999999987532 11111111222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
...+..+|++++|+|++++.+..+...+.. .. ..|+++|+||+|.... .... ...+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~---~~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----LK---DKPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----cC---CCCcEEEEEhhhcccc--chhh---------------hccC
Confidence 234567899999999987766554433322 11 2499999999997644 1111 1111
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..++ ..|++++.|+++|++.+...+..
T Consensus 345 ~~~i------~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVI------RISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceE------EEEeeCCCCHHHHHHHHHHHHhh
Confidence 2223 36788889999999999988764
|
|
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-15 Score=128.08 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||++.+++........ ...+........... ....+.++||||... +....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHH
Confidence 3689999999999999999999876533221 111222222222221 224788999999321 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
......+|++|+|+|++++-+-.. ..++..+....... .|+++|.||.|..........+ ...+....
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEH 139 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 445567899999999984322222 22333343332223 3999999999976432111211 22333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++ ..|+..+.|+.+++..+...+.
T Consensus 140 ~~~~~------e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 GLIFM------ETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333 3677788999999988876653
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=127.92 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|++|+|||||++.+++........ ...+........... ....+.++||||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 379999999999999999999876532211 112222222222231 124678999999532 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++.+-.. ..++..++...... .|+++|+||+|.......... ....+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQREVTFL---------EASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhccCCHH---------HHHHHHHHcC
Confidence 44567899999999985433222 23444444443333 399999999997643111111 1233444334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..++. .|++++.|+.++++.+..
T Consensus 137 ~~~~~------~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFLE------TSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEEE------EECCCCCCHHHHHHHHHH
Confidence 33333 577788999999998764
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=127.26 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.+|+++|++|+|||||++.+++...... .+.|..... ..... ++ ..+.++||||... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 5899999999999999999997754222 111222222 22223 33 3678999999432 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++|+|+|++++-+-.. ..++..+....... .|+++|.||+|.......+.+ ....+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~~~~~~---------~~~~~~~ 135 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQRDVTYE---------EAKQFAD 135 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCcCHH---------HHHHHHH
Confidence 33445678899999999985432221 22333333332222 499999999997644211111 1233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+..++ ..||+++.|+.+++..+...+
T Consensus 136 ~~~~~~~------e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 ENGLLFL------ECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HcCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 3333333 367788899999988776544
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-15 Score=125.97 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=93.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++++++...... . .+.+.......... ++ ..+.++||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD-Y--DPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc-c--CCCccceEEEEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence 47899999999999999999998654221 1 11111111112223 33 36789999996542 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|.......... ....+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~~~~~~~---------~~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQRKVSRE---------EGQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccccceecHH---------HHHHHHHH
Confidence 2334556799999999984332221 2233333333221 12499999999997643111111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..++ ..||+++.|+.++++.+...+
T Consensus 137 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPYI------ETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cCCcEE------EeeCCCCCCHHHHHHHHHHhh
Confidence 333333 367788899999999887543
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-15 Score=126.57 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=95.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++++.+........ ...+.......+.+ ++ ..+.++||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence 4789999999999999999998765432211 11122223333333 33 3688999999421 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-.. ..++..+....... .|+++|+||+|.......... ....+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFE---------EACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 3344567899999999985433222 34555554433323 389999999997644211111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+.. . ....|++++.|+.+++..+..
T Consensus 138 ~~~~-~----~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGML-A----VLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCc-E----EEEEECCCCCCHHHHHHHHHH
Confidence 2221 1 123678888999999988764
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-15 Score=129.83 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||++.+++........ ..............+ ++ ..+.||||||... +.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence 79999999999999999999876532111 111111111112222 32 4688999999321 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++|+|+|++++-+-.. ..++..+....... .|+++|+||+|.......... ....+....+
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~~~ 137 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKRE---------DGERLAKEYG 137 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHH---------HHHHHHHHcC
Confidence 44667899999999985432221 33455555544333 399999999997643111111 1233444444
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+++. .|++++.|+.+|+..+...+...
T Consensus 138 ~~~~e------~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 138 VPFME------TSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 57788899999999998777654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-15 Score=126.43 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.+|+|||||++.+++...........+ ........... ....+.++||||.... ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence 5899999999999999999998765322111111 11111111111 2346889999997542 111223
Q ss_pred hcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC-CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK-IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+.++|++++|+|++++-+-.. ..++..+....+.. ...|+++|.||+|........... ...+....+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE---------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH---------HHHHHHHhC
Confidence 4557799999999985444332 34455566554322 234999999999976431111110 112222222
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++ ..||+++.|+.++++.|.++
T Consensus 140 ~~~~------e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFM------ETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEE------EeecCCCCCHHHHHHHHHhc
Confidence 2333 36888899999999988654
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=127.75 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeE--Ee-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTT--VL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+|+++|++|||||||+++++....... ...|........ .. .....+.++||||...... ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence 799999999999999999986543221 112222222222 11 1234788999999653211 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++|+|+|++++.+-.. ..++..+....+ ..|+++|.||+|.... .... ....+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~---------~~~~~~~~~ 132 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKA---------KQITFHRKK 132 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCH---------HHHHHHHHc
Confidence 223567899999999985433222 234455555443 2499999999997632 1100 111222222
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..++ ..||+++.|+.++++.+...+...
T Consensus 133 ~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 133 NLQYY------EISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred CCEEE------EEeCCCCCChHHHHHHHHHHHHhc
Confidence 22333 368888999999999998776543
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-15 Score=126.42 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||+|.+++...... ..+..+.......... ++ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 6899999999999999999998775322 1122222222223333 33 3678999999432 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..++++|+|+|++++.+-.+ ..++..+....... .|+++|+||+|.........++ ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence 344567899999999984333222 22344444433322 4999999999976431111111 22333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+..++ ..|++++.|+.++++.+...
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 33333 35777889999999987654
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.8e-15 Score=154.33 Aligned_cols=163 Identities=21% Similarity=0.172 Sum_probs=113.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|++|+|||||+|.|+|...... ...+++|.........+ .+..+.+|||||+.... ......+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence 46899999999999999999998764222 22355666665555555 77889999999987421 123344555555
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.++..+|++|+|+|++.+++..+..+...++.. ..|+++|+||+|.... ... .......--.
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~--~~~-----------~~~~~~lg~~ 411 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS--EYD-----------AAEFWKLGLG 411 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc--hhh-----------HHHHHHcCCC
Confidence 667788999999999988888887777777642 2499999999997533 111 1111111011
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+ ...||+++.|+.+|++.+...+..
T Consensus 412 ~~------~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 412 EP------YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred Ce------EEEECCCCCCchHHHHHHHHhccc
Confidence 22 236888999999999999877654
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=124.09 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||+|++++........ +++.......... ++ ..+.++||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD---PTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcC---CcchheEEEEEEE-CCEEEEEEEEECCCCcc-----------hHHHH
Confidence 579999999999999999999876432211 1111111122223 33 3477899999543 12222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.+ ..++..+..... ....|+++|+||+|..... .... ....+....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~-~~~~---------~~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-VSSR---------QGQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccce-ecHH---------HHHHHHHHh
Confidence 334556799999999884322222 223334443322 1224999999999976431 1111 122333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+..++. .|++++.|++++++.+...
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GIPYIE------TSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHH
Confidence 333333 6788889999999988654
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-15 Score=125.36 Aligned_cols=158 Identities=20% Similarity=0.148 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||+|++++........ + ++.......... ++ ..+.++||||..... ....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~--~-t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-----------~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYD--P-TIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS-----------AMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccC--C-chhhhEEEEEEE-CCEEEEEEEEECCCcccch-----------HHHH
Confidence 79999999999999999999876432211 1 111111122222 33 467799999965421 1122
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..+...+...... ...|+++|.||+|.........+ ....+....+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~---------~~~~~~~~~~ 136 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTE---------EGKELARQWG 136 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHH---------HHHHHHHHcC
Confidence 33456799999999985322222 2223333333221 12499999999997643111111 1233344334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+++ ..||+++.|+.++++.+.+.+.
T Consensus 137 ~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 CPFL------ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CEEE------EeecCCCCCHHHHHHHHHHHHh
Confidence 3443 3677788999999998876544
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=143.52 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
++.+|+++|++|+|||||+|+|++...... ...+++|.......+.+ ++..+.++||||+.+.. ......-....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIEKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHHHH
Confidence 457999999999999999999998764212 12344555555555555 78889999999987542 11111111222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
..++..+|++++|+|++.+.+..+. ++..+.. .. .|+++|+||+|...
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCC
Confidence 3455678999999999877765554 3333321 12 49999999999753
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.6e-15 Score=144.31 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
+.|+|+|.+|+|||||+|+|+|...+.. ...+.|.+.....+.+.+...+.++||||+... . .......+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-l-p~~lve~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH-L-PHDLVAAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc-C-CHHHHHHHHHH-HH
Confidence 5899999999999999999999876422 223445545444555534448899999998542 1 12223334333 33
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....+|++|+|+|++++.+...... ...+....... .|+++|+||+|..... . .... .. ..+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~~--~--~~~~--------~~--~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDDF--E--PRID--------RD--EENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCch--h--HHHH--------HH--hcCC
Confidence 4568899999999986655444332 33344432222 4999999999976431 1 0010 00 1111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++ ....||+++.|+++|++.+...+..
T Consensus 337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 337 PI-----RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 11 1236888999999999999987753
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=126.25 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=103.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|..|+|||||+..+.+... .... .+..+.......+.. ++ ..+.++||||... +...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47999999999999999999997543 2211 111222222223333 33 4688999999542 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++|++|+|+|++++.+-.. ..++..+....+ . .|++||.||.|+......+.+ ..+.+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~~~~~v~~~---------~~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLAFKRQVATE---------QAQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccchhccCCCHH---------HHHHHHHH
Confidence 3445678899999999985544333 345555655433 3 499999999997543111111 13444444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQ 214 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~ 214 (371)
.+.+++ ..||+++.+++++++.+...+....+.
T Consensus 140 ~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 140 NGMTFF------EVSPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 444444 368888999999999999766654443
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=127.96 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+|+++|.+|+|||||++.+++...... . ..|....+ ..+.. .....+.++||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~-~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN-Y---KATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-C---CCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 689999999999999999998765322 1 12222222 22222 1224789999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHH-hCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTL-FGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~-~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|++++-+-. ...++..+... .+.. .|+++|.||+|..... .... .......+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~~--~~~~-----~~~~~~~~~~~ 137 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSPA--QYAL-----MEQDAIKLAAE 137 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCccc--cccc-----cHHHHHHHHHH
Confidence 45567889999999997432211 12334333332 2222 3799999999975431 1100 00012233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+..++ ..||+++.|+.++++.+..++...
T Consensus 138 ~~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 138 MQAEYW------SVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHHc
Confidence 333333 357888999999999998887654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=129.42 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|.+|+|||||++.+.+...... . .|.......... .+..+.++||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-I----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc-c----CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986553211 1 122222223333 567899999999642 222234
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.++.++|++|||+|++++.+- ......+...+... ...|+++|+||+|..... ...+.+++.. . ..
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~------~---~~ 140 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL------T---RI 140 (168)
T ss_pred HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC------C---cc
Confidence 456788999999999854222 12223333333211 124999999999975431 1112222110 0 00
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
....+.+| +.||+++.|+.+++.+|.
T Consensus 141 ~~~~~~~~----~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWYVQ----PSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCcEEEE----EeeCCCCCChHHHHHHHh
Confidence 01112222 468899999999998874
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-15 Score=124.41 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++...... . .+++.......... ++ ..+.++||||.... ....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-Y--DPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQF-----------TAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------chHH
Confidence 5899999999999999999997654222 1 11111111122223 33 35678999996432 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|.......... ....+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDERVVSRE---------EGQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceecHH---------HHHHHHHHc
Confidence 334567899999999984433222 2334444443221 23499999999997643111111 122233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+++ ..||+++.|+.++++.+...
T Consensus 137 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPFY------ETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHh
Confidence 33333 36778889999999988654
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=130.22 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc------ccCCC-------CCccceeEEEEeEEe----eCCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF------KASAG-------SSAITKTCEMKTTVL----KDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~------~~~~~-------~~~~t~~~~~~~~~~----~~~~~i~liDTPG~~~~ 82 (371)
.+|+++|++|+|||||++++++.... ..... ..++|.........+ ..+..+.+|||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 36999999999999999999874310 00000 012222222111212 13456889999997652
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
......++.++|++|+|+|++.+.+..+...+..+.. .. .|+++|+||+|..... .....
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~~---~~~~~- 140 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSAD---PERVK- 140 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcCC---HHHHH-
Confidence 2222334556799999999986665555444433322 22 3899999999975431 11111
Q ss_pred ccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 163 LECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+....+... ......|++++.|+.+|++.+...+
T Consensus 141 -------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 141 -------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 12222222211 1123478889999999999987654
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=128.86 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=97.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+.....+|+|+|++|+|||||++++++.... ... +..+.......+.+ ++ ..+.|+||||....
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~-~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~---------- 75 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE--DLA-PTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERF---------- 75 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC--CcC-CCceeEEEEEEEEE-CCEEEEEEEEECCCchhh----------
Confidence 3334579999999999999999999987642 111 11122222223333 33 46889999996432
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHH--HHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEA--AVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~--~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
.......+..+|++|+|+|++++-+-.... +...+. .+......|+++|.||+|..........+ ..
T Consensus 76 -~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~---------~~ 144 (211)
T PLN03118 76 -RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESERDVSREE---------GM 144 (211)
T ss_pred -HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccCccCHHH---------HH
Confidence 122233456789999999998543322221 222222 22222224899999999976441111111 12
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+....+..++ ..|++++.++++++..+...+...
T Consensus 145 ~~~~~~~~~~~------e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 145 ALAKEHGCLFL------ECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 22232232222 357778899999999998777553
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=127.69 Aligned_cols=172 Identities=19% Similarity=0.155 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcc---ceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAI---TKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|++|+|||||+|+|+|...+..+....+. |..... +.......+.++||||+.+.....+ ++...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence 57999999999999999999997654333222221 211111 1111245789999999987543322 22222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh-------hHHHHhcccCCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK-------TLEDYLGLECPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~-------~l~~~l~~~~~~~l 169 (371)
..+.++|++++|.+ .+++..+..++..+... + .|+++|+||+|...+... ..++++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 23557788888854 36899999999988875 3 389999999998643211 12233332 11223
Q ss_pred HHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 170 KEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 170 ~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...+... ..++++.+.... .+.++..|.+.+...++..
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhHH
Confidence 4444432 234555444321 3467778887777666653
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-14 Score=124.85 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------CCcEEEEEeCCCCCCCCcchH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------DGQVVNVIDTPGLFDSSAESE 87 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~i~liDTPG~~~~~~~~~ 87 (371)
..+|+++|++|+|||||++.+++........ +.++.........+. ....+.||||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFI--TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCC--CccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence 3789999999999999999999876532211 111111111112211 12468899999932
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 88 YVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 88 ~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
.+.......+.++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|.........+
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~-------- 141 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEE-------- 141 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHH--------
Confidence 133334455678899999999984332222 223333433221 112489999999997643111111
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
....+....+.+++ ..|++++.|++++++.+.+.+
T Consensus 142 -~~~~~~~~~~~~~~------e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 142 -QAKALADKYGIPYF------ETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHHHcCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 13334444443333 367888899999999987654
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=124.68 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE--eEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK--TTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|++|+|||||+|.+++........ .|...... ..... ....+.++||||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK----STIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC----CceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 379999999999999999999887644311 12222222 22221 235788999999532 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+... ..++..+...... ..|+++|+||+|...+.....+ .+..+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~---------~~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLEDQRQVSTE---------EAQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccccccccccHH---------HHHHHHHH
Confidence 3445567899999999984221111 2234444433212 2499999999998623111111 13334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
++..++. .|++++.++.+++..+.
T Consensus 135 ~~~~~~~------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFFE------TSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEEE------EecCCCCCHHHHHHHHh
Confidence 4444444 45667789999988764
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=123.53 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|++++....... ....+.........+ .....+.++||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 37999999999999999999987653221 111212222222222 1223688999999432 112223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.. ..++..+....... .|+++|+||+|.......... .+..+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 136 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQRVVSKS---------EAEEYAKSVG 136 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCCCHH---------HHHHHHHHcC
Confidence 34567899999999874433222 23344455444433 499999999997743111111 1233333334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++. .|++++.|+.++++.+.+.
T Consensus 137 ~~~~~------~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHFE------TSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHH
Confidence 33433 5677789999999998654
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=121.75 Aligned_cols=162 Identities=23% Similarity=0.222 Sum_probs=96.5
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCC
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDG 103 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~ 103 (371)
++|++|+|||||+|+|++....... ...+.|............+..+.++||||+.+.......... ........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence 5899999999999999988764322 223333333333333323678999999999876443322212 22233456
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee
Q 040649 104 IHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF 183 (371)
Q Consensus 104 ~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f 183 (371)
+|++++|+|+..+............. ... .|+++|+||+|.... ......... ...........+++.
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~---~~~--~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~- 143 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLR---ERG--KPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVIA- 143 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---hcC--CeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceEE-
Confidence 79999999999666555544222222 112 499999999998865 333322110 001111111233333
Q ss_pred cCcchhhHhhHHhHHHHHHHHHHH
Q 040649 184 DNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 184 ~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.|+.++.++.++++.+..+
T Consensus 144 -----~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 -----VSALTGEGIDELREALIEA 162 (163)
T ss_pred -----EeeeccCCHHHHHHHHHhh
Confidence 4556678999999888754
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=149.89 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=112.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+++|++|+|||||+|+|+|....... ...++|.......+.+ ++..+.+|||||+....... ...+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHH
Confidence 3479999999999999999999998742111 1234454444444445 77889999999986432111 111222221
Q ss_pred --hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 --GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 --~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++++|+|++.+.+..+...+..+... ..|+++|+||+|+... .....+... +...+.
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~- 591 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMDE--FRRQRLERL-----WKTEFD- 591 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCCh--hHHHHHHHH-----HHHhcc-
Confidence 2345778999999999988888887766655432 2499999999998754 222211111 111111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
...+.+....||+++.|+.+|++.+.........
T Consensus 592 ----~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 592 ----RVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred ----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 1112222346899999999999999998876543
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-15 Score=127.32 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|.+|+|||||++.+...... .. ..|.......... .+..+.++||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~----~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TT----IPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-Cc----CCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 479999999999999999999643321 11 1122222333334 567899999999643 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.++.++|++|||+|++++.+-. .....+...+... ...|+++|+||.|+... ....+.... +. +...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG--LHSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC--cccc
Confidence 4567889999999998542211 1223333322211 12499999999997543 111211110 00 0111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+.+.+ ...||+++.|+.+++++|...+
T Consensus 145 ~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWYI---QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEEE---EEeeCCCCCCHHHHHHHHHHHh
Confidence 1222211 1368889999999999987654
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=130.26 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+|+++|.+|+|||||+|.+++...... ...|..... ....+.+ ...+.|+||||... ....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~----~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKS----YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKM 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC----CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHH
Confidence 689999999999999999998764221 122322222 2233322 34788999999432 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+. ....|+++|.||+|.........+ ....+..
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~---------~~~~~~~ 137 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDD---------KHARFAQ 137 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHH---------HHHHHHH
Confidence 3344668899999999985433222 3345555555432 122379999999997643111111 1233443
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++ ..||+++.|+.++++.+...+..
T Consensus 138 ~~~~~~~------~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 138 ANGMESC------LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 3333232 25888999999999999876654
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=126.49 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++.+++...+..... .|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 489999999999999999998653222111 111112222333 567899999999643 22223345
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh--c
Q 040649 101 KDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL--C 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~--~ 176 (371)
+.++|+++||+|++++.+-.. ...+..+..... .....|+++|+||+|.... ...... ...+.. .
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~---------~~~l~~~~~ 134 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKI---------TQLLGLENI 134 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHH---------HHHhCCccc
Confidence 678899999999985433211 222333322110 0112599999999997654 211111 111110 0
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
....+. ....||+++.|+++++++|.
T Consensus 135 ~~~~~~---~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 135 KDKPWH---IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred cCceEE---EEEeeCCCCCchHHHHHHHh
Confidence 111111 12368889999999999875
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-15 Score=124.08 Aligned_cols=157 Identities=20% Similarity=0.144 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|++++........ +..+.........+. ....+.++||||... +.....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-----------FRTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhH
Confidence 379999999999999999999876532211 111212222222221 224688999999542 122223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.. ..++..+..... ....|+++|+||+|..... ...++ ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcC
Confidence 34567899999999884433222 223444444332 2235899999999976331 11221 222333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..++. .|++++.|+.++++.+..
T Consensus 137 ~~~~~------~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFIE------TSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CEEEE------EecCCCCCHHHHHHHHHH
Confidence 33333 577788999999988754
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=127.99 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||++.+++........ +..........+.+ .+ ..+.|+||||... +...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHH
Confidence 4799999999999999999999876522211 11111122222222 23 3678999999532 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++++|+|++++-+-.. ..++..+....+ ..|+++|+||+|.......... ....+...
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~~~~~~---------~~~~~~~~ 139 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPERKVVETE---------DAYKFAGQ 139 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 3445667899999999985432221 223444443322 2499999999997643111111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++. .|++++.|+.+|++.+...+..
T Consensus 140 ~~~~~~e------~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 140 MGISLFE------TSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred cCCEEEE------EECCCCcCHHHHHHHHHHHHHH
Confidence 3433333 5777889999999998866543
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=126.83 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|.+++...... . .|...............+.++||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998775322 1 1211222223332456899999999642 22223334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+.++|++++|+|++++.+-.. ...++...+... ...|+++|+||+|.... ....+.... .. +..+ +..
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~---~~~ 134 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKY---CSD 134 (160)
T ss_pred hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHH-cC--Cccc---CCC
Confidence 567899999999985432111 122222222111 12499999999997533 112211110 00 0011 111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+.+. ....||+++.|++++++.|..
T Consensus 135 ~~~~---~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDWY---VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcEE---EEecccccCCChHHHHHHHhc
Confidence 1111 124688899999999998753
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=128.56 Aligned_cols=161 Identities=13% Similarity=0.071 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee--EEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT--CEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.+|+++|++|+|||||++.+++...... ...|.. .....+.+. ....+.++||||... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999998654222 112222 222223331 233678999999532 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG--KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+.++|++|+|+|++.+.+-.. ..++..+..... .....|+++|+||+|.........+ .+..+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~---------~~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE---------QMDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH---------HHHHH
Confidence 23445678899999999985433222 223333433221 1123499999999997632111111 13344
Q ss_pred HHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+ ..++ ..|++++.|+.++++.+...+..
T Consensus 137 ~~~~~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 137 CKENGFIGWF------ETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHcCCceEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 44433 2233 36788889999999999876654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=127.94 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CccccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR-RAFKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
.+|+++|.+|+|||||++.+++. ..+.... ...+.|.......+.+ .+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 68999999999999999999863 2222211 0122333333333444 667899999999654
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+......++.++|++++|+|++.+.......++..+.. .. .|+++|+||+|....
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 22233344567799999999986544444444443332 22 389999999998644
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=128.40 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=92.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|.+|||||||++.+++...... ....+.+ ........ ..+..+.++||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~--~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFN--TEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccc--eeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 36899999999999999999987664322 1111111 11112211 1345799999999532 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++-+-.. ...+..+..... ....|+++|+||+|..... ...+..++. +.....
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~------~~~~~~ 141 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLA------LHELSA 141 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhC------ccccCC
Confidence 3334667899999999884322111 122222322222 1235999999999976431 111221111 000000
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+.. .+.||+++.|+.+|+..+.+.+.
T Consensus 142 --~~~~~~----~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 142 --STPWHV----QPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred --CCceEE----EEeecccCCCHHHHHHHHHHHHH
Confidence 001111 23688899999999999876553
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=123.40 Aligned_cols=155 Identities=21% Similarity=0.173 Sum_probs=92.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+|+++|.+|+|||||++.+++...... . .+............+. ....+.++||||... +....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD-Y-KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 699999999999999999998764321 1 1111122211222221 234789999999432 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++|++++|+|++++-+-.. ..++..+....+ . .|+++|+||+|.........+ ....+....
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~---------~~~~~~~~~ 136 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNE---------EAEALAKRL 136 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHH---------HHHHHHHHc
Confidence 445678899999999984322222 223333333222 2 399999999997654211111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+.+++. .|++++.|+.++++.+..
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 137 QLPLFR------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCeEEE------EECCCCCCHHHHHHHHHH
Confidence 444443 566778899999988754
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=126.53 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
+|+++|.+|+|||||+|.+++...... .. ....... ....+ .....+.+|||||.... ...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VP--RVLPEIT-IPADVTPERVPTTIVDTSSRPQD-----------RANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CC--CcccceE-eeeeecCCeEEEEEEeCCCchhh-----------hHHHhh
Confidence 789999999999999999998765322 11 1111111 11111 13457889999996542 111122
Q ss_pred hcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh-hHHHHhcccCCchHHHHHHhc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK-TLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~-~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|....... ..++. +..+....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~--------~~~~~~~~ 135 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEE--------MLPIMNEF 135 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHH--------HHHHHHHH
Confidence 3467899999999985444333 234455554432 3 499999999998654211 11111 12222211
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+. . ......||+++.|+++++..+...+
T Consensus 136 ~~-~---~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 136 RE-I---ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hc-c---cEEEEeccccccCHHHHHHHHHHHh
Confidence 11 0 0112468888999999999887654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=124.32 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||+|++++........ ...+.......... .+ ..+.++||||... +.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHHH
Confidence 79999999999999999999876532211 11121122222333 33 3567999999532 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..+.++|++|+|+|++++.+-... .+...+...... ....|+++|+||+|...+.....+. +..+...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 138 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQS 138 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 446678999999999854332221 222222222221 1124999999999987431112221 2334443
Q ss_pred cC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+ .+++. .|++++.|+.++++.+...+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 139 NGNIPYFE------TSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred cCCceEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 33 23333 5777889999999998865544
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=131.82 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC-----------------------------CCCCccceeEEEEeEEeeCCcEE
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSAITKTCEMKTTVLKDGQVV 71 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~i 71 (371)
+|+++|++|+|||||+++|++..-.... ....++|.......+.+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999854321110 00134455555555555 77899
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
.|+||||+.+ .... +..+...+|++|+|+|++.+....+...+..+.. ++. .++|+|+||+|...
T Consensus 80 ~liDTpG~~~-------~~~~----~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-------YTRN----MVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-------HHHH----HHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999632 1222 2234567799999999987766655554444433 332 26888999999875
Q ss_pred CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 152 DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 152 ~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
.....+...... ++.++...+.... .....||+++.|+.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~---~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDI---TFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCc---eEEEEeCCCCCCCcc
Confidence 322223333332 4555555543211 112356677777664
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=126.03 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.|+++|.+|+|||||++.+........ . ...++.......+.+ ++ ..+.++||||... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~-~-~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA-C-KSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc-C-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 589999999999999999987654221 1 111222222233444 44 4788999999532 233344
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc-
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC- 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~- 176 (371)
.++.++|++|+|+|++++-+-.. ..++..+....+.. .|+++|.||+|+... ..+... ....+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~-------~~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQ-------QGEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHH-------HHHHHHHhcC
Confidence 56778899999999985433332 23444555443333 399999999997543 111100 112222221
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..||+++.|+.+++..+...+..
T Consensus 137 ~~~~~------etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 137 GMRFC------EASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 22222 36888999999999998865543
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=126.84 Aligned_cols=160 Identities=20% Similarity=0.210 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... . .+.+.... ...... ++. .+.+|||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~-~-~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET-Y-DPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C-CCchHhhE-EEEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 489999999999999999986654221 1 11111111 112223 343 578999999542 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+.++|++|+|+|++++.+-.. ..++..+...... ....|+++|+||+|.......... ....+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~---------~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE---------EGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH---------HHHHHHHHh
Confidence 45667899999999985433222 3344445443321 123499999999997643111111 122233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..||+++.|+.+++..+...+..
T Consensus 137 ~~~~~------e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 137 GCEFI------EASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 43333 36888899999999999865553
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=8e-15 Score=124.83 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++.+...... ... .|.......... ....+.++||||... +......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~----pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccC----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 6999999999999999999654432 211 121122222333 567899999999642 22233445
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+.++|++|||+|++++.+-. .....+...+... ...|+++|+||.|.... ....+.... + -+.....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~--~~~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIG--EAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----L--GLHSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----h--CccccCC
Confidence 77889999999998432211 1222233322211 12499999999997543 122111111 0 0000011
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+.+.+ ...||+++.|+.+++++|.
T Consensus 134 ~~~~~---~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWYI---QATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEEE---EEeeCCCCCCHHHHHHHHh
Confidence 12211 2368889999999998874
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=123.09 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.++....... . .+.+.......... ++ ..+.++||||.... ....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-Y--DPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF-----------TAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCcchheEEEEEEE-CCEEEEEEEEECCCcccc-----------hhHH
Confidence 5799999999999999999985543211 1 11111111122333 33 35679999996432 2223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|.+++-+-.. ..++..+..... ....|+++|+||+|.......... ....+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKE---------QGQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHH---------HHHHHHHHh
Confidence 334567799999999874322221 223344433221 122499999999997643111111 122333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+.+++ ..||+++.|+.+++..+...+
T Consensus 137 ~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 43333 367788899999999987654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=125.85 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++........ ...+.......+.. ++ ..+.++||||... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 379999999999999999999876532111 11122222222333 33 3578999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.. ..++..+....+.. .|+++|.||.|.......... ....+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~~v~~~---------~~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNNKVVDSN---------IAKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcccccCCHH---------HHHHHHHHc
Confidence 445678899999999985432221 22334444433333 489999999997644111111 112222322
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .|++++.++.+++..+...+..
T Consensus 136 ~~~~~e------vSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFFE------TSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 333333 5777889999999988765543
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-15 Score=126.80 Aligned_cols=158 Identities=18% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+++|++|+|||||++.|.|...... ..|.........+ .+..+.++||||... +....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 358999999999999999999998754211 1111122223334 577889999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCC--HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS--QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|+...-+ .........+...... ..|+++++||+|.... .....+... +. + ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~-~~ 144 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLATA--APAEEIAEA-----LN-L-HD 144 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCccC--CCHHHHHHH-----cC-C-cc
Confidence 344567899999999984211 1111111222211111 2499999999997654 223322221 00 0 00
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
...+.+.+ ...|++++.|++++++++.+
T Consensus 145 ~~~~~~~~---~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 145 LRDRTWHI---QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cCCCeEEE---EEeECCCCCCHHHHHHHHhc
Confidence 11122211 24688899999999998753
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=127.14 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+|+|..... ..|.. ..+ ... .+|||||++... .. +...+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~-----v~~-~~~--~~iDtpG~~~~~---~~----~~~~~~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQA-----VEF-NDK--GDIDTPGEYFSH---PR----WYHALITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccceE-----EEE-CCC--CcccCCccccCC---HH----HHHHHHHH
Confidence 79999999999999999999865321 11111 122 111 279999986532 11 22222234
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC--
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-- 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-- 178 (371)
+.++|++++|+|++.+.+.... ++... +. ..|+++++||+|.... ..+. +...+...+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~~ 122 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFEE 122 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCCC
Confidence 5678999999999854332222 22222 21 2489999999997533 1111 2233333332
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+++. .|++++.|+++|++.+...+..
T Consensus 123 p~~~------~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 123 PIFE------LNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CEEE------EECCCccCHHHHHHHHHHhchh
Confidence 3333 6778899999999999887753
|
|
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=128.53 Aligned_cols=161 Identities=11% Similarity=0.020 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+++|.+|+|||||++.++............+.+ .....+... ....+.+|||||.... ..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKF-----------GG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee--EEEEEEEECCeEEEEEEEECCCchhh-----------hh
Confidence 556899999999999999999987555322111111111 111122221 2347899999996432 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++|+|+|++++.+-.. ..++..+..... . .|+++|.||+|..... ...+ .+ .+..
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~~-v~~~---------~~-~~~~ 143 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKNRQ-VKAK---------QV-TFHR 143 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhhcc-CCHH---------HH-HHHH
Confidence 22334678899999999985533322 334455554432 2 4999999999975321 1111 11 2222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++ ..||+++.|+.+++..+...+..
T Consensus 144 ~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 144 KKNLQYY------EISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred hcCCEEE------EcCCCCCCCHHHHHHHHHHHHHc
Confidence 2233333 36888899999999998866554
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=126.77 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|+|||||++.+........ ..|.......... .+..+.++||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 347899999999999999999975443211 1122222333334 667899999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++.++|++|||+|++++-+-. .....+...+... ...|+++|+||.|.... ....+.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 44577889999999998432111 1222333333221 12499999999997543 111111110 00 011
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..+.+++ ...||+++.|+.++++++.+.+.
T Consensus 148 ~~~~~~~~---~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 VRQRNWYI---QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ccCCcEEE---EeeeCCCCCCHHHHHHHHHHHHH
Confidence 11221111 13588899999999999886554
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=125.98 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|++|+|||||++.+++...... ..|.........+ ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47899999999999999999987654321 1222222333444 567899999999643 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.++.++|+++||+|++++-+-. .....+...+... ...|+++|+||+|.... ...++.... +. ...+
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~--~~~~ 146 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLP--LTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISES-----LG--LTSI 146 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--cccc
Confidence 4456889999999998432211 1112222222111 12499999999997643 122211111 00 0001
Q ss_pred CC-ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DN-RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.. .+.. ...||+++.|++++++.|.
T Consensus 147 ~~~~~~~----~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 RDHTWHI----QGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCceEE----EecccCCCCCHHHHHHHHh
Confidence 11 1111 2468888999999999875
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-15 Score=129.03 Aligned_cols=161 Identities=11% Similarity=0.059 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|.+|+|||||+|.+.|...... ..|.......... .+..+.++||||... .....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~ 78 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRLW 78 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 347899999999999999999998754211 1121122223333 567889999999643 12223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCC-chhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLED-NEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~-~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
..++.++|+++||+|++++-+- ......+...+.. ....|+++|+||+|.... ....+...+.- .....
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 3456788999999999843111 1111222222221 012499999999997543 11223322221 00000
Q ss_pred h---cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 175 L---CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 175 ~---~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
. .+.+.. .....|+.++.|++++++++..
T Consensus 151 ~~~~~~~~~~---~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPL---EVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCcee---EEEEeecccCCChHHHHHHHHh
Confidence 0 011111 1234678889999999999864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=125.69 Aligned_cols=153 Identities=16% Similarity=0.061 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|++|+|||||++++.+...... ..|.........+ .+..+.++||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 489999999999999999976654221 1122222233334 567899999999653 22223345
Q ss_pred cCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh--c
Q 040649 101 KDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL--C 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~--~ 176 (371)
+.++|++|+|+|++++.+.. ...+...+....- ...|+++|+||+|.... ....+.. ..+.. .
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~---------~~~~~~~~ 130 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEIS---------EKLGLSEL 130 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHH---------HHhCcccc
Confidence 66789999999998432211 1222222222110 12499999999997644 1121111 11110 0
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
....+ ...+.|++++.|+.++++.+.+
T Consensus 131 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 131 KDRTW---SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCcE---EEEEeeccCCCCHHHHHHHHhc
Confidence 00101 1234688899999999998753
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=126.44 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++|+|+|++|+|||||++.+++...... ...|....+. .....++ ..+.++||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 3799999999999999999998765322 1112222221 2222112 3688999999432 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++.+-... .++..+... ... .|+++|.||.|.... ......+. ......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence 33456788999999999854333222 233333332 222 499999999997643 11100010 112333444
Q ss_pred hcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+. .++ ..|++++.++.+++..+...+..
T Consensus 138 ~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 138 KQGAFAYL------ECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HcCCcEEE------EccCCCCCCHHHHHHHHHHHHHh
Confidence 4343 232 36788899999999998866554
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=126.96 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|++|+|||||++.+++........ ..+........+.+ ++ ..+.||||||... +..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 44799999999999999999999876532211 11111222222333 33 3788999999432 223
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++|+|+|++++-+-.. ..++..+....+.. .|+++|+||+|+........+ ....+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~---------~~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHLRSVAEE---------DGQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccccCCCHH---------HHHHHHH
Confidence 33445668899999999984433222 23445555544333 399999999997543111111 1223333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++. .||+++.++.++++.+...+..
T Consensus 146 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLSFLE------TSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 33333333 5778889999999988765543
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=145.43 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=103.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+++|++|+|||||+++|.+...... ..++.|.......+.+.++..++||||||..++ ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 347899999999999999999998765332 234455555555555533448999999997653 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
......+|++++|+|++++........+..+... . .|+++++||+|....+...+...+.. .......++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 3345678999999999876666666555544321 2 39999999999864422223322221 111111122
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+.. .+.||+++.|+++|++.+..
T Consensus 223 ~~~~~----v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIF----VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCceE----EEEECCCCCChHHHHHhhhh
Confidence 21111 23688899999999998864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=123.63 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++++++... ... ..|.........+ .+..+.++||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 489999999999999999998873 211 1122222333344 5678999999996531 2223334
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh--cC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL--CD 177 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~--~~ 177 (371)
+.++|++++|+|++.+-+-.. ...+..+..... ....|+++|+||+|.... ...++... .+.. ..
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~---------~~~~~~~~ 131 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIE---------KLGLEKIL 131 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHH---------hhChhhcc
Confidence 567799999999984311111 122222222111 122499999999998754 22222111 1111 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
...+++ ...|++++.|+.++++.+.
T Consensus 132 ~~~~~~---~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 132 GRRWHI---QPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CCcEEE---EEeeCCCCCCHHHHHHHHh
Confidence 111111 2357778899999988775
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-14 Score=121.75 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.+.+....... ..|....+ ..... ++ ..+.|+||||... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 58999999999999999999876653221 11211111 12233 33 3688999999543 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++|++++|+|++++.+-... .+...+..... ....|+++|.||+|.......+.++ ...+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~---------~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEE---------GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHH---------HHHHHHH
Confidence 34456678999999999865544432 23344444322 1124999999999975431111111 2223333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+.+++ ..||+.+.++.++++.+...+..
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 333333 36778889999999998865543
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-15 Score=122.15 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+++|.... ...|.. ..+ .+ .+|||||.... ...+...+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 6899999999999999999987641 111211 122 22 58999996321 11222222334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-c
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-R 179 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-r 179 (371)
+.++|++++|+|++++.+.....++. .++ .|+++|+||+|..... ...+ ....++...+. +
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~---------~~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIE---------RAKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHH---------HHHHHHHHcCCCc
Confidence 77899999999998665543332222 222 2999999999976421 1111 12333333332 2
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
++ ..|++++.|+++|++.+.
T Consensus 122 ~~------~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IF------EISSVDEQGLEALVDYLN 141 (142)
T ss_pred EE------EEecCCCCCHHHHHHHHh
Confidence 33 367788899999998763
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=120.10 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CccccCCCCCcccee--EEEEeEEe--eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR-RAFKASAGSSAITKT--CEMKTTVL--KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~-~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+|+++|.+|||||||++++.+. ..++.. ...|.. +....... .....+.++||||... +.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HH
Confidence 37999999999999999999854 223221 111221 11122222 1335889999999421 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+-.. ..++..+.... ...|+++|+||+|.... ..+... ....+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDA-------QAQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHH-------HHHHHH
Confidence 223445678899999999985432221 23344444332 12499999999997644 111110 011222
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+..++ ..|++++.|+.++++.+.+.
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARA 162 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHH
Confidence 22222233 36778889999999988764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=146.99 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.|+++|+.++|||||+++|+|....... ....+.|....+..+...++..+.||||||+.+ +...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 6899999999999999999986431111 112456665555444444567899999999532 3333344
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++|++++|+|++.++.+.+...+..+.. ++. .++++|+||+|.... ..++..... +..++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4667899999999998888887777776654 342 257899999998754 444443333 45555433311
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..+.|+.++.|+++|++.|..+...
T Consensus 140 ---~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 ---EAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1112346788899999999999887654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.9e-15 Score=127.76 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|||||||++.+++...... ..|.......+.+ ++..+.++||||... .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 357899999999999999999998664211 1122222233444 567889999999532 11222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCC-chhhHHHHhcccCCch--HHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLED-NEKTLEDYLGLECPKP--LKEI 172 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~-~~~~l~~~l~~~~~~~--l~~~ 172 (371)
..++.++|++++|+|++++-+-. .....+...+.. ....|+++|+||+|.... ....+..++....... ...+
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc
Confidence 34456789999999997431111 122333333321 123599999999997643 1122222221100000 0000
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.... .+.+. ....||+++.|+.++++++...
T Consensus 159 ~~~~-~~~~~---~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSG-IRPIE---VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccC-ceeEE---EEEeEecCCCChHHHHHHHHhh
Confidence 0001 11111 1346889999999999998654
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=125.15 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=95.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|.+|||||||++.+........ ..|.......+.. .+..+.++||||... +....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 447999999999999999999986543221 1122222333444 667899999999421 22333
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++|||+|++++.+-. .....+...+... ...|++||+||.|.... ...+++ ...+..
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~l~l 145 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEI---------TDKLGL 145 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHH---------HHHhCc
Confidence 44567889999999998432211 2223333333211 12499999999997644 222221 112211
Q ss_pred c--CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 C--DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. ..+.+.+ ...||+++.|+.++++++...+.
T Consensus 146 ~~~~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 146 HSLRQRHWYI---QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred cccCCCceEE---EeccCCCCCCHHHHHHHHHHHHh
Confidence 1 1122221 13588899999999999876554
|
|
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=125.51 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.+|+|+|.+|+|||||++.+++........ ..|....+ ..+.. ++. .+.++||||.... ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 379999999999999999999766432111 11221111 12333 333 5669999995431 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++++|+|++++-+-.. ..++..+... .. ..|+++|+||+|...... ... .+. ...+..+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~~~~~-~~~-~v~---~~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLIEQDR-SLR-QVD---FHDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEccccccccc-ccC-ccC---HHHHHHHHH
Confidence 22334567899999999984422221 2344444443 21 249999999999754310 000 000 011233344
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++. .|++++.|+.+|++.+.+.+..
T Consensus 138 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 138 EIKAQHFE------TSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 33433333 5777889999999999866543
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=124.36 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCC---CCcc--ceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAG---SSAI--TKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~---~~~~--t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~ 90 (371)
..+|+|||.+|.||||++|+|+......+... ..++ |+.......... ++ -.+++||||||+|.- .++..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence 36899999999999999999987766543221 1122 333333222221 22 278999999999863 345566
Q ss_pred HHHHHHHhhh------------------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 91 KEIAKCIGMA------------------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 91 ~ei~~~~~~~------------------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+-|.+++... ...+||++|.++.+ +.+.+.|.++++.|.+.. +++.|+.|.|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccccc
Confidence 6666655322 13689999999877 778899999999888763 8999999999875
Q ss_pred CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhh
Q 040649 152 DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE 190 (371)
Q Consensus 152 ~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~s 190 (371)
- +.-..|... ++.-+...+..+++.+....+.
T Consensus 199 l--eEr~~Fkqr-----I~~el~~~~i~vYPq~~fded~ 230 (336)
T KOG1547|consen 199 L--EERSAFKQR-----IRKELEKHGIDVYPQDSFDEDL 230 (336)
T ss_pred H--HHHHHHHHH-----HHHHHHhcCcccccccccccch
Confidence 5 344444443 6777777788888876664443
|
|
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.60 E-value=3e-14 Score=122.71 Aligned_cols=161 Identities=19% Similarity=0.128 Sum_probs=94.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
|+|+|.+|+|||||++++++...... .. .|....+. .... ++. .+.++||||.... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-YV---PTVFENYSADVEV-DGKPVELGLWDTAGQEDY-----------DRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-CC---CcEEeeeeEEEEE-CCEEEEEEEEECCCCccc-----------chhch
Confidence 58999999999999999998765322 11 12112221 2222 333 5889999996432 11223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLKEI 172 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~~~ 172 (371)
..+.++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|..... .....+... ........+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHH
Confidence 35678899999999985432222 234455554433 24999999999976431 222222110 001112334
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
....+. .++ ..|++++.|+.++++.+...+
T Consensus 141 ~~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 141 AKRIGAVKYL------ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHcCCcEEE------EecCCCCCCHHHHHHHHHHHh
Confidence 444332 333 357888999999999887553
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-15 Score=123.16 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=88.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
|+++|++|+|||||+|+|+|........ .|.......... .+..+.++||||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 7899999999999999999986532211 122222222333 456789999999542 222233345
Q ss_pred CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 102 DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
..+|++++|+|++.+.+. ......+...+.. ....|+++|+||+|.... ......... +. +.....+
T Consensus 66 ~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~--~~~~~~~ 134 (159)
T cd04159 66 RGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN--LKSITDR 134 (159)
T ss_pred hcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC--cccccCC
Confidence 678999999999732211 1111223322211 112499999999997654 222222111 00 0000111
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+. ....|++++.|+.++++.+..
T Consensus 135 ~~~---~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 135 EVS---CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ceE---EEEEEeccCCChHHHHHHHhh
Confidence 111 123577888999999998754
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-14 Score=120.69 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=92.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||++.+++....+... +..........+.. .+ ..+.++||||... +.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhhHH
Confidence 68999999999999999999776533211 11111122223333 33 3678999999432 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++..+|++++|+|++++-+-.. ..++..+....+.. .|+++|.||.|.........+ ....+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~---------~~~~~~~~~~ 136 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQKRQVGDE---------QGNKLAKEYG 136 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCCCHH---------HHHHHHHHcC
Confidence 44668899999999985422222 23344444433223 499999999997543111111 1223333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+++ ..||+++.++.+++..|.+.
T Consensus 137 ~~~~------e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 MDFF------ETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHhh
Confidence 3332 36778889999999988653
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=149.50 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=104.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+|+|++|+|||||+++|.+..+.. ...+++|.....+.+.+ ++..++||||||+.++. ...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hHH
Confidence 34789999999999999999998866532 22345565555555666 67889999999987531 112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
......+|++|+|+|++++........+..+... . .|+|+|+||+|....+...+...+.. ...+...++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 2334567999999999877766666666554432 2 39999999999864321112111111 011112222
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+.. ...||+++.|+.+|++.+..
T Consensus 425 ~~vp~----vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDTIF----VPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCceE----EEEeCCCCCCchHHHHhhhh
Confidence 21111 23688899999999998864
|
|
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=123.56 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+++|.+|+|||||++.+++...........+.+ . ...+.+. ....+.++||||..+. ....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS--Y-RKQCVIDEETCLLDILDTAGQEEY-----------SAMR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE--E-EEEEEECCEEEEEEEEeCCCCccc-----------hhhH
Confidence 4799999999999999999999776532211111111 1 1122221 2235778999997652 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|........... ...+....
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~~~i~~~~---------~~~~~~~~ 140 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSERQVSTGE---------GQELAKSF 140 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHH---------HHHHHHHh
Confidence 334567899999999985433121 2334444443221 124999999999965431111111 12233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++ ..||+++.|+.+++..+...+.
T Consensus 141 ~~~~~------e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 141 GIPFL------ETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred CCEEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 33333 3678888999999998876544
|
|
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=119.62 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
+|+++|++|+|||||++.+++....... .+.+........... ....+.++||||.... ......
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIRDN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc---CCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHHHH
Confidence 7999999999999999999976643221 111111111112221 2346889999995432 222333
Q ss_pred hcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....|++++|+|++++-+-. -..++..+..... ....|+++|+||+|........... ...+...++.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~~~ 137 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQWGV 137 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHhCC
Confidence 456779999999987432211 1223333333211 1224999999999986521111111 2223333443
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+++ ..|++++.|+.+|+..+...+.
T Consensus 138 ~~~------~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 138 PYV------ETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred eEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 333 3677889999999998876543
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=121.63 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++.+++....+.. ....+.......+.+ .+ ..+.++||||... +...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 478999999999999999999966543221 111122222223333 34 3577899999532 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++..+|++++|+|++++.+... ..++..+....... .|+++|.||+|.... ..+.... .+.+...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~-------~~~~~~~ 141 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQR-------AEEFSDA 141 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 2334667899999999874322211 23444445444333 389999999997643 1111110 1222222
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
....++ ..|++++.|+.++++.+...
T Consensus 142 ~~~~~~------~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 142 QDMYYL------ETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cCCeEE------EeeCCCCCCHHHHHHHHHHH
Confidence 222233 36777889999999988754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-14 Score=120.10 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||++.+++....... ............+.+ ++ ..+.++||||... ... ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------~~~---~~~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEI-DGERIKVQLWDTAGQER-------FRK---SMV 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEEE-CCeEEEEEEEeCCChHH-------HHH---hhH
Confidence 68999999999999999999976643221 111111222223333 33 4788999999432 111 123
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|.........+ ....+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTD---------LAQRFADAH 139 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHH---------HHHHHHHHc
Confidence 344678899999999985443333 233334443321 122499999999997643111111 122333433
Q ss_pred CCceEeecCcchhhHhh---HHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKR---TEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~---~~~i~~Ll~~i~~~~ 208 (371)
...++. .||++ +.++.+++..+...+
T Consensus 140 ~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 SMPLFE------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence 334444 34444 577888887766443
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-14 Score=119.50 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||++++++... .... .+.+.......... . ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY--DPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc--CCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 489999999999999999998763 2221 11111222222333 3 24678999999543 122223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.+ ..+...+....+. ...|+++|+||+|.........+ ....+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKE---------EGKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHH---------HHHHHHHHcC
Confidence 34556799999999884332222 3333444444331 23599999999998753111111 1233334333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+++ ..|++.+.|+.++++.+...
T Consensus 136 ~~~~------~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 136 CPFI------ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CcEE------EeccCCCCCHHHHHHHHHhh
Confidence 3333 35677789999999987653
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=128.21 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+|+|..... ......|..+....+.+ .+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 68999999999999999999986422 22334454444444445 778899999999875432211222222 234
Q ss_pred cCCceEEEEEEeCCC
Q 040649 101 KDGIHAVLLVFSVRS 115 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~ 115 (371)
+..+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 567899999999863
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-14 Score=123.96 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|.+|+|||||++.+++....... ..|....+ ..... ++ ..+.|+||||.... ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~-----------~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFV-DGLHIELSLWDTAGQEEF-----------DRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEE-CCEEEEEEEEECCCChhc-----------ccc
Confidence 37999999999999999999987653321 11211111 11222 33 46889999995431 112
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc-----CCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE-----CPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~-----~~~~l 169 (371)
....+.++|++++|+|++++-+-.. ..++..+....+ ..|+++|.||+|+... .......... .....
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 2345678899999999985433322 234555554432 2499999999997654 2221111100 00011
Q ss_pred HHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+. +.+ ...||+++.|+.+++..+...+..
T Consensus 140 ~~~~~~~~~-~~~----~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 140 LAVAKRINA-LRY----LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHcCC-CEE----EEccCCcCCCHHHHHHHHHHHHhc
Confidence 222222221 112 236888899999999999876654
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-14 Score=122.06 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++...... . .+..........+.. ++ ..+.|+||+|... +....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~-~-~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDED-Y-IQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHhh
Confidence 3789999999999999999987654221 1 111111122222333 33 4688999999532 22334
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-hhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-KTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++.++|++++|+|++++.+-.+ ..++..+....+.. .| ++|.||+|+..+.. ........ ....+...
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~-----~~~~~a~~ 138 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITK-----QARKYAKA 138 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHH-----HHHHHHHH
Confidence 456778999999999985543332 23444454432222 25 68899999753210 11111111 13334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++ ..||+++.|+++++..+...+..
T Consensus 139 ~~~~~~------e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 139 MKAPLI------FCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 443333 36888899999999998865543
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=144.35 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc--cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRA--FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++++|||||+|+|+|... ++. ....++|....+..+.+ ++..+.+|||||..+ +...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHH
Confidence 689999999999999999998542 111 11245666666655555 568899999999421 333334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD- 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~- 177 (371)
..+.++|++++|+|++++........+..+.. +|. .++++|+||+|..+. ..++..... ++.++...+
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence 45567899999999997666666666655543 332 249999999998754 333322222 444444332
Q ss_pred ---CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 178 ---NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 178 ---~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+++ +.|+.++.|+.+|++.+..++...
T Consensus 138 ~~~~~ii------~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 138 LKNAKIF------KTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCcEE------EEeCCCCCCchhHHHHHHHHHHhC
Confidence 2223 367888899999999988776654
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=121.53 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|||||||++.+++.. ..... .|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 48999999999999999999872 22111 121122223344 667899999999432 22223445
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+.++|+++||+|++++.+-.+ ...++....... ...|+++|+||.|.... .+..+..... .+..+....+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~---~l~~~~~~~~~ 136 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEYL---SLEKLVNENKS 136 (167)
T ss_pred HcCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHhc---CcccccCCCCc
Confidence 678899999999984432221 222333322211 23599999999997655 2222222210 02222222222
Q ss_pred ceEeecCcchhhHhhH------HhHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRT------EQVQQLLSLVN 205 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~------~~i~~Ll~~i~ 205 (371)
+++.+ ..||+++ .|+.+.++++.
T Consensus 137 ~~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIE----PCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred eEEEE----EeEceeCCCCccccCHHHHHHHHh
Confidence 23332 2456665 78999998874
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=127.77 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCC-------------Ccccee------------------------EEEEeE
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGS-------------SAITKT------------------------CEMKTT 63 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------------~~~t~~------------------------~~~~~~ 63 (371)
+|+++|++|+|||||++.++...... +... .+.|.. .....+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 47899999999999999998533211 1000 011100 000111
Q ss_pred EeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 64 VLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 64 ~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
.. .+..++++||||..+ ........+. ...+|++++|+|++.++...+...+.++... + .|+++|
T Consensus 80 ~~-~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivv 144 (224)
T cd04165 80 EK-SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVV 144 (224)
T ss_pred ee-CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEE
Confidence 22 567899999999643 2222222221 1357999999999988888888888887754 2 389999
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEe--------------------ecCcchhhHhhHHhHHHHHHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVL--------------------FDNKTKYEAKRTEQVQQLLSL 203 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~--------------------f~~~~~~sa~~~~~i~~Ll~~ 203 (371)
+||+|.... ..+...+.. +...+...+....+ +.+....|+.++.|++.|+.+
T Consensus 145 vNK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 145 VTKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred EECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 999998754 444443332 34444321111000 112234578889999999998
Q ss_pred HHHH
Q 040649 204 VNAV 207 (371)
Q Consensus 204 i~~~ 207 (371)
+..+
T Consensus 218 L~~l 221 (224)
T cd04165 218 LNLL 221 (224)
T ss_pred HHhc
Confidence 8643
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-14 Score=120.98 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.+.+...... ...|....+. .+.. ++ ..+.|+||||.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 5799999999999999999997654222 1122222221 2233 33 46789999996542 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc-----CCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE-----CPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~-----~~~~l 169 (371)
....+.++|++|+|+|++++-+-... .++..+....+ . .|+++|.||.|.... ..+.+.+... .....
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 23356688999999999855333322 24445544332 2 499999999997544 2221111110 01112
Q ss_pred HHHHHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 170 KEILQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 170 ~~~~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..+....+ ..++ ..||+++.|+.++++.+...
T Consensus 141 ~~~a~~~~~~~~~------e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 141 EKLARDLKAVKYV------ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHHHhCCcEEE------EecCCCCCCHHHHHHHHHHH
Confidence 22333322 1233 36888899999999887653
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-14 Score=124.37 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||+|.+++...... ..+.++.......+...++ ..+.++||||... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 6899999999999999999998765322 1122222222222222223 3688999999432 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++++-+-.. ..++..+...... ...|+++|.||.|.........+ ....+...+
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~~~---------~~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTRE---------EAEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccCHH---------HHHHHHHHh
Confidence 345677899999999985422222 2233334333322 12478999999997643111111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..|++++.|+.++++.|...+..
T Consensus 140 ~~~~~------e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 140 GMKYI------ETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 43333 35777889999999998865543
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.1e-14 Score=125.57 Aligned_cols=161 Identities=19% Similarity=0.121 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|.+|+|||||++.+++.........+... .......+.+ .....+.+|||||... . +. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~---~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM------W----TE---D 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch------H----HH---h
Confidence 37999999999999999999765543111111111 0111112222 1335688999999651 0 11 1
Q ss_pred hhcC-CceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKD-GIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~-~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.++. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|.......+.+. ...+....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~---------~~~~a~~~ 136 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQE---------GRACAVVF 136 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHH---------HHHHHHHc
Confidence 1223 7899999999985432221 334444444321 1234999999999976442111111 12233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..||+++.|+.+|++.+...+..
T Consensus 137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 33333 36788889999999999877753
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=122.96 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||++++++........ +............ .....+.++||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV---PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 379999999999999999999887532211 1111111112222 123468899999976421 1112
Q ss_pred hhcCCceEEEEEEeCCCCCCH--HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh----cccCCchHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQ--EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL----GLECPKPLKEI 172 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~--~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l----~~~~~~~l~~~ 172 (371)
..+..+|++++|+|.+++.+- ....++..+....+ ..|+++|+||+|.... ......+ ..........+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHHH
Confidence 234678999999999843222 22334444444333 2499999999998755 2111100 00001112233
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
....+. .++ ..|++++.|+.++++.+.+
T Consensus 142 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAIGYM------ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCeEEE------EeecCCCCCHHHHHHHHhh
Confidence 333332 223 3577788999999988754
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.9e-14 Score=124.17 Aligned_cols=171 Identities=19% Similarity=0.071 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.+|+|||||++.+++...... ..|....+....+ ....+.||||||.... ......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~-----------~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQF-----------HGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccc-----------hhhHHH
Confidence 3789999999999999999998775321 1122222222223 3457899999996432 112233
Q ss_pred hcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh---------hHHHH-hcccCCch
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK---------TLEDY-LGLECPKP 168 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~---------~l~~~-l~~~~~~~ 168 (371)
.+.++|++|+|+|++++.+-... .++..+....+.. .|+++|.||+|+...... ..... ........
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 46688999999999854333222 2333333333333 399999999997641000 00000 00000111
Q ss_pred HHHHHHhcCCce------Eee--cCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 169 LKEILQLCDNRW------VLF--DNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 169 l~~~~~~~~~r~------~~f--~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+....+... -++ -.....||+++.+|.+++..+.+.+.
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 233333322100 000 01124788899999999998876554
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-14 Score=126.39 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=117.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~ei~~~ 96 (371)
...+|+|+|.|++|||||.|.+.|..++ ..+....|+.+..-.+...+...+.++||||+........ .....+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~--~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVS--AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccc--cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4579999999999999999999999984 4445555666665554444667899999999987543221 111223333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh--hHHHHhcccCCch-HHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK--TLEDYLGLECPKP-LKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~--~l~~~l~~~~~~~-l~~~~ 173 (371)
...+...+|+|++|+|++..-.......+..+..... .|-++|.||+|.+..... .+.+.+....-.. ..++-
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 4456678899999999984333334455666665432 299999999998754211 1111111111110 01111
Q ss_pred HhcCC-c----------eEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 174 QLCDN-R----------WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 174 ~~~~~-r----------~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..... + .-.|......||++|.|+++|.+++....+..
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 11110 0 11244445589999999999999998887753
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=119.25 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|||||||+++|.|..... ..|.... + .+ .+|||||-+-- + ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i~-----~-~~---~~IDTPGEyiE---~----~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAIE-----Y-YD---NTIDTPGEYIE---N----PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------CccceeE-----e-cc---cEEECChhhee---C----HHHHHHHHH
Confidence 589999999999999999999977521 1232222 2 11 36999996531 1 223444444
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|+|++|.|++.+.+.--..+. ..|. +|+|-|+||+|...++ ..++. ....+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f~----~pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA----SMFN----KPVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh----cccC----CCEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 45577999999999854332222121 2232 4999999999977331 33332 34456666644
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
-. ...|+.+++|+++|.++|.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 32 2256778899999999875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=118.68 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|++|+|||||++.+++........ +..+.......+.+ ++ ..+.++||||... +..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTLQIWDTAGQER-----------FRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--CceeeEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHH
Confidence 34799999999999999999999766533211 11111121222333 33 3677899999421 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+.++|++++|+|++++-+-.. ..+...+...... ....|+++|.||+|..... .... .+..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~---------~~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTE---------EAQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHH---------HHHHH
Confidence 33345677899999999984432222 2233333332211 1124999999999975321 1111 13334
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
....+. .++ ..|++++.++.++++.+.+
T Consensus 140 ~~~~~~~~~~------e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDYPYF------ETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCCeEE------EEECCCCCCHHHHHHHHHh
Confidence 443332 222 3577788999999987754
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=146.10 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
..++|+|+|++|+|||||+++|++...... ..++.|.....+...+. .+..++||||||+.. +.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence 457899999999999999999997665322 12344433333333332 357899999999542 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
......+..+|++|+|+|++++........+..+... . .|+|+|+||+|........+...+.. ...+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 2233345677999999999877766666666655431 2 39999999999765421222222211 000111
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.++..+ .....||+++.|+.+|++.+..+.
T Consensus 380 ~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 122111 112468889999999999987654
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=133.39 Aligned_cols=168 Identities=23% Similarity=0.194 Sum_probs=111.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++.+.|+++|-|++|||||+|+|+|...+... .-..|.++....+.++++..+.+-||-||.+. .+ ..+...+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-LP-~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-LP-HPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCccc-CC-hHHHHHHHHH
Confidence 45689999999999999999999998875432 23345555555566656889999999999863 11 1222223222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+. ....+|++|.|+|+++|..... ......|.++--.. .|+|+|+||+|.+.+ ... +..+-..
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~-----------~~~~~~~ 329 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEI-----------LAELERG 329 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhh-----------hhhhhhc
Confidence 22 2357899999999997643333 33444555542222 499999999998866 221 1111111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+ +....||+++.|++.|++.|...+...
T Consensus 330 ~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 330 SP-------NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CC-------CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 11 233478899999999999999888854
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=123.24 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|.+++........ ..+........+.+ ++ ..+.++||||... +...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~--~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 3789999999999999999999876532211 11111111222223 33 3578999999432 1122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++|+|+|++++-+-.. ..++..+....... .|+++|+||+|.......+.+ ....+...
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~---------~~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTE---------EGEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHH---------HHHHHHHH
Confidence 2334557899999999984332222 23334344333333 499999999997643111111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..++ ..|++++.++.++|..+...+
T Consensus 141 ~~~~~~------e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 HGLIFM------EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 356777899999887776443
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=118.28 Aligned_cols=158 Identities=19% Similarity=0.162 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|.+|+|||||++++++........ +.+.... .....+. ....+.+|||||.... .....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIEDSY-RKQVEIDGRQCDLEILDTAGTEQF-----------TAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcchheE-EEEEEECCEEEEEEEEeCCCcccc-----------hhhhH
Confidence 579999999999999999999776532211 1111111 1222221 2246789999996542 12223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.+++++++|+|.+++-+-.. ..+...+...... ...|+++|+||.|.........++ ...+....+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 137 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQWG 137 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCccCHHH---------HHHHHHHcC
Confidence 34556799999999884322222 2333444443321 234999999999976442111111 122233333
Q ss_pred -CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 -NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 -~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+++ ..||+++.++.+++..+...
T Consensus 138 ~~~~~------~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 138 NVPFY------ETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CceEE------EeeCCCCCCHHHHHHHHHHH
Confidence 2233 36788899999999988653
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-14 Score=118.13 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++........ ++........... ++ ..+.|+||||..... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD---PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC---CchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------chH
Confidence 589999999999999999998766533211 1111111122323 33 357789999964421 112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.+ ..++..+....+ ....|+++|+||+|........... ...+....
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAE---------GRALAEEW 136 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHH---------HHHHHHHh
Confidence 233557799999999985432222 334444544322 1224999999999975431111111 12222323
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+..++ ..||+++.++.+++..+...
T Consensus 137 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 137 GCPFM------ETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHh
Confidence 33333 35777889999999887653
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-14 Score=122.49 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=93.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... . ...+.......+.+ .+ ..+.++||||.... .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y--RRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C--CCchhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence 489999999999999999998765321 1 11111111222333 33 46889999996542 11223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH-hc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ-LC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~-~~ 176 (371)
..+.++|++++|+|++++.+-.. ..++..+...... ...|+++|+||+|..... ..+... ....... .+
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~-~~v~~~-------~~~~~~~~~~ 136 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEE-RQVPAK-------DALSTVELDW 136 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccccc-ccccHH-------HHHHHHHhhc
Confidence 35667899999999985333222 2233344443321 224999999999976431 111100 0111111 11
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..|++++.|+.+|++.+...+..
T Consensus 137 ~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 137 NCGFV------ETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred CCcEE------EecCCCCCCHHHHHHHHHHHhhc
Confidence 22233 36788899999999999876653
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=135.80 Aligned_cols=140 Identities=18% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|++++|||||+|+|++....... ....+.|.......+.. ++..+.++||||+.+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH
Confidence 456689999999999999999999975221100 01134555544444444 667889999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+...+......+|++++|+|+..++...+...+..+... |. .++|+++||+|.... ....+.+
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCCH--HHHHHHH
Confidence 333333445577999999999977888887777776643 32 137899999998754 3332222
Q ss_pred cccCCchHHHHHHhcC
Q 040649 162 GLECPKPLKEILQLCD 177 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~ 177 (371)
.. .+..++..++
T Consensus 151 ~~----~l~~~l~~~~ 162 (409)
T CHL00071 151 EL----EVRELLSKYD 162 (409)
T ss_pred HH----HHHHHHHHhC
Confidence 21 2556666544
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-14 Score=139.67 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CC---------------CCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SA---------------GSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~ 66 (371)
.++..+|+++|++++|||||++.|++..-... +. ...++|.......+.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 44668999999999999999999984321100 00 0246677776666666
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
++..+++|||||+.+. ...+ ......+|++++|+|++. ++.......+..+.. ++. .|+++|+
T Consensus 82 ~~~~i~liDtpG~~~~-------~~~~----~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDF-------VKNM----ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccc-------hhhH----hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 7789999999996542 1112 223456899999999986 555555555555543 342 3799999
Q ss_pred eCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 145 TGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 145 tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
||+|........+...... +..++..++.... .....+.||.++.|+.+
T Consensus 147 NK~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPD-DIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EccccccccHHHHHHHHHH-----HHHHHHhhCCCcC-cceEEEeecccCCCccc
Confidence 9999875322223322222 4555554442100 00112357777788765
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=118.07 Aligned_cols=161 Identities=16% Similarity=0.081 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||+..+++........ .|....+ ..+.. ++ ..+.++||||... +...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~----~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------YDRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCC----CcceeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 589999999999999999998765422211 1111111 12222 33 4678999999543 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||.|+.... .+.+..... .......
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence 2345678899999999985433222 224444544322 2 4999999999975331 222211111 0111223
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+....+. .++ ..||+++.|++++++.+..
T Consensus 142 ~~~~~~~~~~~~------e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKYL------ECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEEE------EecccccCCHHHHHHHHHH
Confidence 33333332 222 4688899999999988764
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=119.05 Aligned_cols=162 Identities=21% Similarity=0.211 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|++|+|||||++.+++........ +.+.......... .+ ..+.++||||..+. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY---PTIENTFSKIIRY-KGQDYHLEIVDTAGQDEY-----------SILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC---cchhhhEEEEEEE-CCEEEEEEEEECCChHhh-----------HHHH
Confidence 589999999999999999999776432211 1111111122222 32 35789999996431 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|.+++.+-.. ..++..+....+. ...|+++|+||+|.......... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQRQVSTE---------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhcCccCHH---------HHHHHHHHc
Confidence 234556799999999884322221 2223333333221 22499999999997643111111 122333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+.+++. .|++++.++.+++..+.+.+....
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 137 GAAFLE------SSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 433333 567788999999999987666543
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=121.64 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|++|+|||||++.+++....... ..|....+ ..... ++ ..+.++||||...... .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------L 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------c
Confidence 37999999999999999999987653221 11111111 12223 33 3477999999654211 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH---hcc-cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY---LGL-ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~---l~~-~~~~~l~ 170 (371)
....+.++|++++|+|..++-+-.. ..++..+... ... .|+++|+||+|..... ...... ... .......
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 2234667899999999985433222 2344555443 223 4999999999976441 111111 000 0011123
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+....+...+ ...||+++.|++++++.+...
T Consensus 141 ~~~~~~~~~~~-----~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCY-----VECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEE-----EEecCCcCCCHHHHHHHHHHH
Confidence 33333332211 136888899999999887643
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=118.32 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||++.+++...... . .+.+.......... ++. .+.+|||||...... ... .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~----~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGE-Y--DPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT------EQL----E 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccc-c--CCChHHhceEEEEE-CCEEEEEEEEECCCCccccc------chH----H
Confidence 489999999999999999986543211 1 11111111122223 333 578999999763100 001 1
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+..........|+++|.||+|.......... ....+....+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~---------~~~~~~~~~~ 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTE---------EGEKLASELG 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHH---------HHHHHHHHcC
Confidence 22446799999999985433222 2334445543210112499999999996533111111 1223334444
Q ss_pred CceEeecCcchhhHhhH-HhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRT-EQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~-~~i~~Ll~~i~~~~ 208 (371)
..++. .|++++ .++.+++..+.+.+
T Consensus 138 ~~~~e------~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFE------VSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CEEEE------eCCCCCchhHHHHHHHHHHHH
Confidence 33333 566666 58999999887654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=117.80 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+++|.+|+|||||++.+++....... ..|....+ ..... ++ ..+.||||+|-.. +.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~----~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~-----------~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEI-DTQRIELSLWDTSGSPY-----------YD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCceeeeeEEEEEE-CCEEEEEEEEECCCchh-----------hH
Confidence 4578999999999999999999976643221 11221111 12222 33 3688999999432 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCch
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKP 168 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~ 168 (371)
.....++.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||.|+.... ..+..... .-....
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233456788999999999986544333 345556665543 3 4999999999975321 11111000 001122
Q ss_pred HHHHHHhcCC-ceEeecCcchhhHhhHHh-HHHHHHHHHHH
Q 040649 169 LKEILQLCDN-RWVLFDNKTKYEAKRTEQ-VQQLLSLVNAV 207 (371)
Q Consensus 169 l~~~~~~~~~-r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~ 207 (371)
...+....+. .++ ..||+++.+ |.+++..+...
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence 4455555443 333 368888998 99999887653
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=121.48 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|++|+|||||++.+++...... .. .|.... ...+.+ ++ ..+.++||||.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YV---PTVFENYVADIEV-DGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-CC---CccccceEEEEEE-CCEEEEEEEEeCCCchhh-----------hhc
Confidence 5799999999999999999998664322 11 111111 122233 33 36789999996431 111
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC-----CchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC-----PKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~-----~~~l 169 (371)
....+.++|++++|+|++++-+-.. ..++..+....+ . .|+++|.||+|.... ......+.... ....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 2234578899999999984422111 223444443322 2 499999999997643 21111111000 0112
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+...++. .++ ..||+++.|+.++++.+...
T Consensus 141 ~~~~~~~~~~~~~------~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGYM------ECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEEE------EeccccCcCHHHHHHHHHHH
Confidence 333333332 222 36888899999999988754
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=125.64 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc--C--------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKA--S--------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+|+++|++|+|||||+++|+...-... + ....+.|.......+.+ .+..+++|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 489999999999999999975321100 0 00112333344445555 7889999999998753
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE 164 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~ 164 (371)
..... .++..+|++++|+|+..+.......++..+... + .|+++|+||+|.... ...+.
T Consensus 78 -----~~~~~----~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a---~~~~~---- 136 (237)
T cd04168 78 -----IAEVE----RSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA---DLEKV---- 136 (237)
T ss_pred -----HHHHH----HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC---CHHHH----
Confidence 12222 334456999999999977776666666666542 2 399999999997754 22333
Q ss_pred CCchHHHHHHhcCCceEeec
Q 040649 165 CPKPLKEILQLCDNRWVLFD 184 (371)
Q Consensus 165 ~~~~l~~~~~~~~~r~~~f~ 184 (371)
+..+...++.+++++.
T Consensus 137 ----~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 137 ----YQEIKEKLSSDIVPMQ 152 (237)
T ss_pred ----HHHHHHHHCCCeEEEE
Confidence 3334455566666654
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=121.22 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||||++.+++...... . ..|....+. .+.. .....+.||||||-.. +..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~-y---~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPET-Y---VPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCC-c---CCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHH
Confidence 347899999999999999999997764322 1 112111111 1222 1224788999999432 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l 169 (371)
....++.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||+|+.... ..+..... .......
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e~ 152 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLRTDL-STLMELSNQKQAPISYEQG 152 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-chhhhhccccCCcCCHHHH
Confidence 33456789999999999985544332 345555665443 2 3999999999965321 11110000 0011224
Q ss_pred HHHHHhcCCc-eEeecCcchhhHhhHH-hHHHHHHHHHHHHh
Q 040649 170 KEILQLCDNR-WVLFDNKTKYEAKRTE-QVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~r-~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~ 209 (371)
..+....+.. ++ ..||+++. ++++++..+...+.
T Consensus 153 ~~~a~~~~~~~~~------EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 153 CALAKQLGAEVYL------ECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHHHHcCCCEEE------EccCCcCCcCHHHHHHHHHHHHH
Confidence 4555555542 32 36888887 79999998876543
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-13 Score=112.73 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||+|.+++... +... ..+.+.......+.. ++ ..+.++||||..+.. .. .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~-------~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AI-------R 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HH-------H
Confidence 6899999999999999999998883 3322 223333333333344 55 578899999955421 11 1
Q ss_pred hhhcCCceEEEEEEeCCCC---CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSR---FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
......++.+++++|.... +..........+...... ..|+++|+||+|.... . ... .....+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~--------~~~~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKT--------HVAFLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhH--------HHHHHHh
Confidence 1122234566666665422 111112333334433322 3499999999998754 2 111 1222333
Q ss_pred hcC-CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 175 LCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 175 ~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+ .+++ +.|+..+.|+.++++.+.
T Consensus 135 ~~~~~~~~------~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEPII------PLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCceE------EeecCCCCCHHHHHHHhh
Confidence 222 2222 357778899999988764
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=118.28 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.++....... ...|....+. .... ++ ..+.|+||||... +...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~l 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDRL 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 6899999999999999999987654222 1122211111 1222 33 4688999999532 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
...++.++|++|+|+|++++-+-... .++..+....+ . .|+++|.||.|+.... ...+..... .......
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-N--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 34457789999999999854332222 23343443322 3 4999999999975431 111111110 0011223
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+....+. .++ ..||+++.|+.+++..+.+.+.
T Consensus 144 ~~a~~~~~~~~~------e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 144 ALAKQIHAVKYL------ECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHcCCcEEE------EeCCCCCCCHHHHHHHHHHHHh
Confidence 34333331 233 3678889999999999886553
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=126.44 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh---CCCcccc-------------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 21 TVVLLGRTGNGKSATGNSIL---GRRAFKA-------------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+|+++|++|+|||||+++|+ |...... .....++|.......+.+ .+..+++|||||+.+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 48999999999999999996 3211100 011235566666666667 7889999999997652
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+. ..++..+|++++|+|+..+....+...+..+... + .|+++++||+|....
T Consensus 78 -----~~~~----~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIEV----ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHHH----HHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 2223 3344556999999999877777777777766542 2 389999999997754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=134.58 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=104.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC------Cc-cc-----c--CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR------RA-FK-----A--SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~------~~-~~-----~--~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||++.|+|. .. +. . .....+.|.......+.. ++..++++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc
Confidence 446789999999999999999999843 11 00 0 011145666655555544 667899999999754
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+...+......+|++++|+|+..+....+...+..+... +. | +|+++||+|..+. ..+.+.
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~--~~~~~~ 198 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD--EELLEL 198 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH--HHHHHH
Confidence 222222233458999999999877888887777777653 32 5 6789999998754 233332
Q ss_pred hcccCCchHHHHHHhcC-----CceEeecCcchhhHhhH-------HhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRT-------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~-------~~i~~Ll~~i~~~~~ 209 (371)
+.. .++.++..++ .++++.+.. ++.++ .++..|++.+..+++
T Consensus 199 i~~----~i~~~l~~~~~~~~~vpiip~Sa~---sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 199 VEM----ELRELLSFYKFPGDEIPIIRGSAL---SALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHH----HHHHHHHHhCCCCCcceEEEeccc---eeecCCCcccccchHHHHHHHHHHhCC
Confidence 221 2445554432 123322221 12222 347888888887765
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-13 Score=117.07 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.+++...... . ..|....+ ..+.. ++ ..+.+|||||... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~-~---~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPET-Y---VPTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC-c---CCceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 5799999999999999999998764322 1 11221111 12223 33 4688999999432 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l~ 170 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||.|+.... ......-. .-......
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3345778999999999986544333 345556665543 3 3999999999975321 11111100 00111234
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHh-HHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQ-VQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~ 207 (371)
.+....+. .++ ..||+++.+ +.+++..+..+
T Consensus 142 ~~a~~~~~~~~~------E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYL------ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEE------ECccCcCCcCHHHHHHHHHHH
Confidence 45544443 222 368888885 99999887763
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=132.45 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc------cc--------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA------FK--------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|++++|||||+++|++... +. ......+.|.......+.. ++..++++||||+.+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH
Confidence 45568999999999999999999996211 00 0001235555554444444 567899999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+...+......+|++++|+|+..+........+..+.. .|. | +++|+||+|.... ....+.
T Consensus 88 -----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~ 149 (396)
T PRK12735 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHH
Confidence 33334445567899999999987676666666665553 332 5 5568999998743 222222
Q ss_pred hcccCCchHHHHHHhcCC-----ceEeecCcchhhHhhH----------HhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRT----------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~----------~~i~~Ll~~i~~~~~ 209 (371)
+.. .+..++..++. ++++ .|+.++ .++..|++.+..+++
T Consensus 150 ~~~----ei~~~l~~~~~~~~~~~ii~------~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VEM----EVRELLSKYDFPGDDTPIIR------GSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHH----HHHHHHHHcCCCcCceeEEe------cchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 221 24555554432 2232 344443 367888988888764
|
|
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=115.91 Aligned_cols=161 Identities=15% Similarity=0.051 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+++|.+|+|||||++.+++....+... .+............+ ++ ..+.++||+|-.... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAY-SPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccC-CCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------c
Confidence 45789999999999999999999877530111 111111122222333 33 367789999854321 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....++.++|++++|+|++++-+ ......++.. +......|+++|+||+|..... .. .. .....+...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~~--~~--~~-----~~~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKK-YFMLGEIPCLFVAAKADLDEQQ--QR--YE-----VQPDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHH-hccCCCCeEEEEEEcccccccc--cc--cc-----cCHHHHHHH
Confidence 12233567899999999974422 1122233332 2111134999999999975431 10 00 012233333
Q ss_pred cCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+. .++ ..|++++.++.+|++.+...+-
T Consensus 138 ~~~~~~~------~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 138 LGLPPPL------HFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cCCCCCE------EEEeccCccHHHHHHHHHHHhh
Confidence 332 122 3577788999999999877643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=131.12 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK--------------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||+++|++...-. ......+.|.......+.. ++..+++|||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 4456899999999999999999998742100 0001235565554444443 567899999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+...+......+|++++|+|++.+....+...+..+... |. .++|+++||+|.... ....+.+
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcch--HHHHHHH
Confidence 222233334567999999999877777777777776543 32 147889999998743 2232222
Q ss_pred cccCCchHHHHHHhcCC-----ceEeecCcchhhHhhH--------HhHHHHHHHHHHHHh
Q 040649 162 GLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRT--------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~--------~~i~~Ll~~i~~~~~ 209 (371)
.. .+..++...+. ++++ .|+.++ .++..|++.+...++
T Consensus 151 ~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 25555554442 3344 344443 367889988888765
|
|
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-13 Score=115.25 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||+..++....... . ..|....+ ..... ++ ..+.|+||+|.... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-~---~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~-----------~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-Y---IPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDY-----------NRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-C---CCcceeeeEEEEEE-CCEEEEEEEEECCCCccc-----------ccc
Confidence 5799999999999999999997664222 1 11211111 12222 33 47889999996542 222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH-hcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY-LGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~-l~~~~~~~l~~~~ 173 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||+|+........... .........+.+.
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 2345678899999999986544333 245555654433 3 49999999999754310000000 0000111233444
Q ss_pred HhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 174 QLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 174 ~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+.. ++ ..||+++.+|.+++..+.+.+
T Consensus 143 ~~~~~~~~~------E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYI------ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEE------ECCCCcccCHHHHHHHHHHHH
Confidence 443332 22 368889999999999988765
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=126.99 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|||+|++|||||+|.|+|... .......+|..+......+ +|-.+.++|+||+..........+.++...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s--eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS--EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc--cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 347999999999999999999999875 3333455555555555556 8899999999999876444333344444443
Q ss_pred hhhcCCceEEEEEEeCCC------------------------------------------CCCHHHHHHHHH--------
Q 040649 98 GMAKDGIHAVLLVFSVRS------------------------------------------RFSQEEEAAVHR-------- 127 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~------------------------------------------~~~~~~~~~l~~-------- 127 (371)
..+|++++|+|+.. +++..+...++.
T Consensus 139 ----R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 139 ----RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred ----ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 45599999998873 233222222222
Q ss_pred ---------------HHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHh
Q 040649 128 ---------------LQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAK 192 (371)
Q Consensus 128 ---------------l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~ 192 (371)
+..+.++..+.|.+.|+||+|..+. +.++. +.... .. ...|+.
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~~~------------l~~~~--~~------v~isa~ 272 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EELER------------LARKP--NS------VPISAK 272 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHHHH------------HHhcc--ce------EEEecc
Confidence 2224455557899999999997754 33322 22211 22 335777
Q ss_pred hHHhHHHHHHHHHHHHh
Q 040649 193 RTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 193 ~~~~i~~Ll~~i~~~~~ 209 (371)
++.++++|.+.+.+.+.
T Consensus 273 ~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 273 KGINLDELKERIWDVLG 289 (365)
T ss_pred cCCCHHHHHHHHHHhhC
Confidence 78899999999887654
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=112.64 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=87.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe---eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL---KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
|+|++|+|||||+|+|++........ ..|. ........ ..+..+.++||||..+. .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 58999999999999999877632211 1111 22222222 12567899999996642 1111334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHH--HHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAV--HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l--~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
...+|++++|+|++.+.+......+ ..+.... ....|+++|+||+|..... ...... ........+..
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~ 135 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGV 135 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCC
Confidence 5678999999999854443333322 1122111 2235999999999987552 221111 01222333344
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.++. .|+..+.++.+++..+.
T Consensus 136 ~~~~------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFE------TSAKTGENVEELFEELA 156 (157)
T ss_pred cEEE------EecCCCCChHHHHHHHh
Confidence 4554 34555678888888763
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=122.84 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... . .+++.......+.. ++ ..+.||||||..+. .....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~-y--~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~-----------~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQ-Y--TPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF-----------PAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-C--CCChhHhEEEEEEE-CCEEEEEEEEECCCChhh-----------hHHHH
Confidence 699999999999999999987664321 1 11111111222233 33 46789999996432 11122
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHh-------CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLF-------GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
.++..+|++|+|+|++++-+-.. ..++..+.... ......|+++|+||+|.........++ +.
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------i~ 137 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------VE 137 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------HH
Confidence 34557899999999985432221 22333443321 011235999999999976431122221 22
Q ss_pred HHHHhc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 171 EILQLC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 171 ~~~~~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.++... +..++ ..||+++.|+++|+..+..+..
T Consensus 138 ~~~~~~~~~~~~------evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 138 QLVGGDENCAYF------EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred HHHHhcCCCEEE------EEeCCCCCCHHHHHHHHHHHhc
Confidence 333211 11223 3678889999999999987653
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-13 Score=115.85 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+++++|++|+|||||++++++...... .. ++........... ++ ..+.+|||||.... ....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTE-YV--PTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEF-----------DKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CC--CceeeeeeEEEEE-CCEEEEEEEEECCCChhh-----------cccc
Confidence 3689999999999999999987654322 11 1111111112222 33 46788999996432 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc----CCchHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE----CPKPLKE 171 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~----~~~~l~~ 171 (371)
..++.++|++|+|+|++++-+-.. ..++..+..... . .|+++|.||+|..... .....+.... .......
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 335678899999999985433222 234555554322 2 4999999999976431 1111111100 0011223
Q ss_pred HHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 172 ILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 172 ~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+....+. .++ ..||+++.|+++|++.+.
T Consensus 142 ~a~~~~~~~~~------e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEYI------ECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeEE------EEeCCCCCCHHHHHHHHH
Confidence 3333332 233 367888999999998763
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=123.86 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc--ccCCC------------------CCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF--KASAG------------------SSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
++|+|+|++|+|||||+++|+...-. ..+.. ..+.+.......+.+ .+..+++|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 68999999999999999999843211 00000 012233333445555 7889999999997
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+. ..... .++..+|++++|+|++.++......++..+.. . . .|+++++||+|....
T Consensus 82 ~df-------~~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~--~--~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-------SEDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-R--G--IPIITFINKLDREGR 138 (267)
T ss_pred hHH-------HHHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-c--C--CCEEEEEECCccCCC
Confidence 642 12222 23346699999999987666555555544432 1 2 399999999997654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=135.09 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-ccccC-------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR-AFKAS-------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
.+|+++|+.++|||||+++|+... .+... ....++|.......+.+ .+..++||||||+.++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 589999999999999999998421 11111 01135666666666777 7899999999997652
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC 165 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~ 165 (371)
..++.. ++..+|++++|+|+..+.......++..+... . .|+++|+||+|..... ....+..
T Consensus 78 ----~~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a~---~~~v~~e-- 139 (594)
T TIGR01394 78 ----GGEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSAR---PDEVVDE-- 139 (594)
T ss_pred ----HHHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCcC---HHHHHHH--
Confidence 223333 34456999999999876666666666666542 2 3889999999976442 2222221
Q ss_pred CchHHHHHHhcCCc--eEeecCcchhhHhhH----------HhHHHHHHHHHHHHhhc
Q 040649 166 PKPLKEILQLCDNR--WVLFDNKTKYEAKRT----------EQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 166 ~~~l~~~~~~~~~r--~~~f~~~~~~sa~~~----------~~i~~Ll~~i~~~~~~~ 211 (371)
+..++..++.. ...| +....||+.+ .++..|++.+.+.++..
T Consensus 140 ---i~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ---HHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 23333222110 0000 1122455555 37999999998887754
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=134.76 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CCC-----------------CCcccee
Q 040649 9 DWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SAG-----------------SSAITKT 57 (371)
Q Consensus 9 ~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~~-----------------~~~~t~~ 57 (371)
.|...+...+..+|+++|+.++|||||++.|+...-... +.. ..++|..
T Consensus 17 ~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid 96 (474)
T PRK05124 17 AYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITID 96 (474)
T ss_pred HHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeE
Confidence 344455556779999999999999999999975432110 100 1245555
Q ss_pred EEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCC
Q 040649 58 CEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIF 137 (371)
Q Consensus 58 ~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (371)
.....+.+ ++..++||||||+.+ +.. .+......+|++++|+|+..++...+...+..+.. ++.
T Consensus 97 ~~~~~~~~-~~~~i~~iDTPGh~~-------f~~----~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~--- 160 (474)
T PRK05124 97 VAYRYFST-EKRKFIIADTPGHEQ-------YTR----NMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI--- 160 (474)
T ss_pred eeEEEecc-CCcEEEEEECCCcHH-------HHH----HHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---
Confidence 55555555 677899999999532 222 22233467799999999987766555444444333 342
Q ss_pred CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
+++++|+||+|....+...+...... +..++..++. ..+....+.|++++.++..
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~--~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPG--NLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHH-----HHHHHHhcCC--CCCceEEEEEeecCCCccc
Confidence 38999999999874422333333332 4444443330 0111223356666676654
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.4e-13 Score=111.70 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=110.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
-.+|+|+|.+|+|||.|+..+.+.....+-.++.++ +.....+.+ +|. .+.||||.|- +.+...
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGV--Df~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGV--DFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeee--EEEEEEeee-cceEEEEEeeecccc-----------HHHhhh
Confidence 468999999999999999999988775543333332 344444555 443 7899999993 224455
Q ss_pred HhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++.++|+||+|+|++.. |... ..++..+....+..+ |.++|.||+|+.+..-.+.+ ..+.+..
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~~~v~~~---------~a~~fa~ 142 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNV-KRWIQEIDRYASENV--PKLLVGNKCDLTEKRVVSTE---------EAQEFAD 142 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCC--CeEEEeeccccHhheecCHH---------HHHHHHH
Confidence 66778999999999999832 3222 345556666555544 99999999997644211111 1244555
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
..+.+.+ .++||+.+.++.+.+..+...+....+
T Consensus 143 ~~~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 143 ELGIPIF-----LETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred hcCCcce-----eecccCCccCHHHHHHHHHHHHHHhcc
Confidence 5555421 236888889999999988876665544
|
|
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=114.11 Aligned_cols=163 Identities=21% Similarity=0.203 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|.+|+|||||+-...-........+..+..... ..... .....+-||||.|.-. +....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~t--ktv~~~~~~ikfeIWDTAGQER-----------y~sla 71 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLT--KTVTVDDNTIKFEIWDTAGQER-----------YHSLA 71 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEE--EEEEeCCcEEEEEEEEcCCccc-----------ccccc
Confidence 3789999999999999998776555433222222222111 12222 1224677999999542 45566
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.+++.+++++|+|+|+++.-+ ..-+.++..|+...++.+ -+.+|.||+|+........++ .+.+....
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yAe~~ 140 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYAESQ 140 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHHHhc
Confidence 788999999999999984322 123567777777666443 566799999988642233332 34455543
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+--++ .+||+++.++.+++..|...++..
T Consensus 141 gll~~------ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 141 GLLFF------ETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred CCEEE------EEecccccCHHHHHHHHHHhccCc
Confidence 43333 368899999999999998877754
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=122.09 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|++||.|++|||||+|+|..... ....+..+|..++.....+.+...++|-|.||+......+.-....+.+.+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 4689999999999999999997765 33445566666666666664445699999999998766666677778887776
Q ss_pred hcCCceEEEEEEeCCCC--CCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 100 AKDGIHAVLLVFSVRSR--FSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~--~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+ +.++||+|.+.+ .++.+ ...|..=.+.+.. ...+|.++|.||+|..+. -+.+ +..+.+.
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~--------l~~L~~~ 338 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNL--------LSSLAKR 338 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHH--------HHHHHHH
Confidence 6 999999999844 13322 2222211122222 234599999999997533 1111 3345554
Q ss_pred cCCc-eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+. +++ .||+.++++..|+..+..
T Consensus 339 lq~~~V~p------vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 LQNPHVVP------VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCCCcEEE------eeeccccchHHHHHHHhh
Confidence 4444 444 577788999999887654
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=117.77 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|+.||||||+++.|.+..... ..+|.......+.+ .+..+.++|.+|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 456899999999999999999999765422 22233444555556 788999999999432 2334
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~ 173 (371)
...++.++|++|||+|.+++- .-......|..++... ...|+++++||.|..+.. ...+..++.- ..+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~ 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT
T ss_pred ceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc
Confidence 556678899999999998321 1122333444444322 235999999999977541 1223333321 1111
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...++..+ ..|+.++.|+.+.++++.+.
T Consensus 147 --~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 --NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp --SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred --cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 12333333 24677889999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=114.23 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE--EEeEEee------CCcEEEEEeCCCCCCCCcchHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE--MKTTVLK------DGQVVNVIDTPGLFDSSAESEYVSK 91 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~~------~~~~i~liDTPG~~~~~~~~~~~~~ 91 (371)
.+|+++|.+|+|||||++.+++....... ..|..+. ...+.+. ....+.|+||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~----~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~---------- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRP----SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------
Confidence 37999999999999999999987653321 1222221 1222221 123688999999532
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-----------------CCCCCeEEEEEeCCCCCCCc
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-----------------KKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ilv~tk~D~~~~~ 153 (371)
+.......+.++|++|+|+|++++-+-.. ..++..+....+ .....|+++|.||.|+....
T Consensus 67 -~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 67 -VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 33334556788999999999986544333 234444433210 01124999999999976432
Q ss_pred hhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhh-HhhHHhHHHHHHHHHHHHhh
Q 040649 154 EKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE-AKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 154 ~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~s-a~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+-...+.. ...+...++......++....+ +....+...|-.+++.++..
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 1111111111 3445666776666555543221 22223445555555555543
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=117.10 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|.+|+|||||++.+++...+.. .. .|....+ ..+.. ++ ..+.||||||... +...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~-y~---pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~-----------~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGS-YV---PTVFENYTASFEI-DKRRIELNMWDTSGSSY-----------YDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc-cC---CccccceEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 5799999999999999999998765322 11 1111111 12222 33 3688899999432 2333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
...++.++|++|+|+|++++-+-.. ..+...+....+ . .|+++|.||+|+..+. ..+...... -......
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~--~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-N--AKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 4456789999999999985433222 223333333322 2 3999999999976431 111111000 0011233
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHH-hHHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTE-QVQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~ 207 (371)
.+....+. .++ ..||+++. +|.++|......
T Consensus 142 ~~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVGAVSYV------ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHH
Confidence 44444442 333 25677666 499999987764
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-13 Score=116.82 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred EcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 25 LGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 25 vG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
+|.+|+|||||++.+++.... .. ...|..... ..+.+ .....+.||||||... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 699999999999999865432 21 112222222 22222 1235789999999543 233334467
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 102 DGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
.++|++|+|+|++++.+-.. ..++..+..... . .|+++|.||+|+.... ...+ .+ .+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~~-v~~~---------~~-~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVKDRK-VKAK---------SI-TFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-CCHH---------HH-HHHHHcCCEE
Confidence 78899999999985543332 234555555432 3 3999999999964320 1111 01 2222223222
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+ ..||+++.|+.+++..+...+..
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 36888899999999999866644
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-13 Score=128.84 Aligned_cols=172 Identities=16% Similarity=0.205 Sum_probs=101.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC------ccc------c--CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR------AFK------A--SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~------~~~------~--~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
.++..+|+++|+.++|||||+++|++.. .+. . .....+.|.......+.. ++..+++|||||+.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 4556899999999999999999998531 110 0 001145565554444433 566899999999643
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+ ...+......+|++++|+|++.+....+...+..+... +. .++++|+||+|.... ....+.+
T Consensus 88 -------f----~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~--~~~~~~~ 150 (394)
T TIGR00485 88 -------Y----VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD--EELLELV 150 (394)
T ss_pred -------H----HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH--HHHHHHH
Confidence 2 22223334567999999999977777777777766543 32 256678999998754 2222222
Q ss_pred cccCCchHHHHHHhcC-----CceEeecCcchh--hHhhHHhHHHHHHHHHHHHh
Q 040649 162 GLECPKPLKEILQLCD-----NRWVLFDNKTKY--EAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~--sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. ..++.++...+ .++++.++.... ...-..++..|++.+..+++
T Consensus 151 ~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 151 E----MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred H----HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 1 12455555443 234443332111 00011246677777776553
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=117.51 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=70.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccc-eeEE-----------------------------------------
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAIT-KTCE----------------------------------------- 59 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t-~~~~----------------------------------------- 59 (371)
|+|+|..++|||||+|+|+|....+++..+.... +...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999998766543321000 0000
Q ss_pred -----------EEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHH
Q 040649 60 -----------MKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRL 128 (371)
Q Consensus 60 -----------~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l 128 (371)
...........+.||||||+.+...... ..+..+...+|++|||+++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0000011223588999999987433222 2222334667999999999977776666555554
Q ss_pred HHHhCCCCCCeEEEEEeCC
Q 040649 129 QTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 129 ~~~~~~~~~~~~ilv~tk~ 147 (371)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 43322 3699999985
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.3e-13 Score=128.25 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=105.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK--------------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||+++|++..... ......+.|.......+.. ++..++++||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH
Confidence 3456899999999999999999999732100 0001235555554444443 567899999999632
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEE-EEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI-VVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-lv~tk~D~~~~~~~~l~~~ 160 (371)
+...+......+|++++|+|+..+....+...+..+... + .|.+ +++||+|.... ....+.
T Consensus 88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~--~~~~~~ 149 (396)
T PRK00049 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch--HHHHHH
Confidence 333444456688999999999877888777777776653 3 2654 68999998743 222222
Q ss_pred hcccCCchHHHHHHhcC-----CceEeecCcchh----hHhhHHhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCD-----NRWVLFDNKTKY----EAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~----sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+. ..+..++..++ .++++.+..... +..-..++..|++.+..+++
T Consensus 150 ~~----~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VE----MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HH----HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 22 12555665543 233443332110 00011257788888887654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-13 Score=133.96 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~~ 82 (371)
+.|+++|++++|||||+|+|++...... .+++.|.......+... ....+.||||||....
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 5799999999999999999998865321 12223321111111110 0124889999996432
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
.......+..+|++++|+|+++++...+...+..+... . .|+++|+||+|...
T Consensus 83 -----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 -----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence 22223345678999999999977777777666666532 2 39999999999863
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-13 Score=113.11 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+.+...........+ .......... ++. .+.++||||... +.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVSI-DGKPVNLEIWDTSGQER-----------FDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEEE-TTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccc--cccccccccc-ccccccccccccccccc-----------cccccc
Confidence 589999999999999999997764332211111 1222222333 333 689999999532 111223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.. ..++..+....+.. .|+++|.||.|......-+.+ ..+.+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~---------~~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVE---------EAQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHH---------HHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhh---------HHHHHHHHhC
Confidence 44667899999999984322221 34555566655533 399999999997642111211 2445566555
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..++. .|++++.++.+++..+.+.+
T Consensus 136 ~~~~e------~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYFE------VSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SEEEE------EBTTTTTTHHHHHHHHHHHH
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 44444 46667789999888776543
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=123.60 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc--cCCCC--------------CccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK--ASAGS--------------SAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~--~~~~~--------------~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+|+++|++|+|||||+|+|++..... .+... .+.|.......+.+ .+..+++|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 48999999999999999997532110 00000 12222233334445 678899999999754
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...... .++..+|++++|+|++.+........+..+... + .|.++|+||+|....
T Consensus 77 ----f~~~~~----~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 ----FVGETR----AALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA 131 (268)
T ss_pred ----HHHHHH----HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC
Confidence 122222 334456999999999876666555555555432 2 389999999997754
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-13 Score=135.43 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=97.2
Q ss_pred cCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCce
Q 040649 26 GRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIH 105 (371)
Q Consensus 26 G~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d 105 (371)
|.+|+|||||+|+++|.... . ...+++|.........+ ++..+.++||||..+...... .+.+... ......+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~-~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-V-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARD-YLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-e-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHH-HHhhcCCC
Confidence 89999999999999998752 2 23455666555555555 677899999999886533211 1112211 11235789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecC
Q 040649 106 AVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185 (371)
Q Consensus 106 ~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~ 185 (371)
++++|+|+++ +... ......+.+ .. .|+++|+||+|..+..+... ..+.+....+.++++
T Consensus 75 vvI~VvDat~-ler~-l~l~~ql~~---~~--~PiIIVlNK~Dl~~~~~i~~----------d~~~L~~~lg~pvv~--- 134 (591)
T TIGR00437 75 LVVNVVDASN-LERN-LYLTLQLLE---LG--IPMILALNLVDEAEKKGIRI----------DEEKLEERLGVPVVP--- 134 (591)
T ss_pred EEEEEecCCc-chhh-HHHHHHHHh---cC--CCEEEEEehhHHHHhCCChh----------hHHHHHHHcCCCEEE---
Confidence 9999999983 3322 222222222 22 49999999999754311111 123444444555554
Q ss_pred cchhhHhhHHhHHHHHHHHHHHH
Q 040649 186 KTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 186 ~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.||+++.|+++|++.+.+..
T Consensus 135 ---tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 ---TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---EECCCCCCHHHHHHHHHHHh
Confidence 57778899999999988664
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=128.42 Aligned_cols=168 Identities=13% Similarity=0.144 Sum_probs=100.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEe------------------e-------CC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVL------------------K-------DG 68 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~------------------~-------~~ 68 (371)
..++..+|+++|+.|+|||||+.+|+|....... ....+.|....+....+ . ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4556699999999999999999999875211110 01123333322211110 0 02
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
..++|+||||.. .+...+ ......+|++++|+|++.+. .......+..+.. .+. .|+++|+||+
T Consensus 85 ~~i~liDtPG~~-------~f~~~~----~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~ 149 (411)
T PRK04000 85 RRVSFVDAPGHE-------TLMATM----LSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKI 149 (411)
T ss_pred cEEEEEECCCHH-------HHHHHH----HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEee
Confidence 578999999943 222222 23344669999999999665 4555555555543 332 3789999999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|.... ......... +..++... +.++ ...|++++.|++.|++.+...++.
T Consensus 150 Dl~~~--~~~~~~~~~-----i~~~l~~~~~~~~~i------i~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 150 DLVSK--ERALENYEQ-----IKEFVKGTVAENAPI------IPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccccc--hhHHHHHHH-----HHHHhccccCCCCeE------EEEECCCCcCHHHHHHHHHHhCCC
Confidence 98754 222211111 23333211 1122 336888899999999999986653
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=121.33 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC---Cccc--------------------------cCCCCCccceeEEEEeEEeeCCcEE
Q 040649 21 TVVLLGRTGNGKSATGNSILGR---RAFK--------------------------ASAGSSAITKTCEMKTTVLKDGQVV 71 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~---~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~~i 71 (371)
+|+++|+.|+|||||+.+|+.. .... ......++|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4899999999999999998522 1100 0001135555555556666 78899
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
++|||||+.+ ....+. .....+|++|+|+|+..+ ........+..+. .++. +|+++|+
T Consensus 80 ~liDtpG~~~-------~~~~~~----~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-------FVPNMI----TGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-------HHHHHH----HHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999643 222222 334567999999999853 2223333333332 2332 3899999
Q ss_pred eCCCCCCC--chhhHHHHhcccCCchHHHHHHhcCC-----ceEeecCcchhhHhhHHhHH
Q 040649 145 TGGDDLED--NEKTLEDYLGLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 145 tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~~~i~ 198 (371)
||+|.... ....+...... +..++...+. ++++ .||.++.|+.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~~~~ii~------iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPKDVPFIP------ISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecCcCCCCC
Confidence 99998742 12334444433 4555554432 2333 5666677655
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-12 Score=114.57 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNS-ILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~-L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+++|++|||||||++. +.|... .....+.+. ......+.. .....+.++||||.... .
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~~~t~~~--~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----------~ 72 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE-KKYIPTLGV--EVHPLKFYTNCGPICFNVWDTAGQEKF-----------G 72 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccce--EEEEEEEEECCeEEEEEEEECCCchhh-----------h
Confidence 3457999999999999999975 454422 111111111 111111211 12347889999995321 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+...+++++|+|++++.+-.. ..++..+..... . .|+++|+||+|..... .... ...+.
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~~~-~~~~----------~~~~~ 138 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKDRQ-VKAR----------QITFH 138 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCcccc-CCHH----------HHHHH
Confidence 112233456799999999985443322 233344443332 2 3899999999965321 1111 11233
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
...+..++ ..|++++.++++++..+...+.....
T Consensus 139 ~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 139 RKKNLQYY------DISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhhccc
Confidence 33333333 35777889999999988877666544
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=133.51 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=100.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc------cccCC-------CCCccceeEEEEeEEee--CC--cEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA------FKASA-------GSSAITKTCEMKTTVLK--DG--QVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~------~~~~~-------~~~~~t~~~~~~~~~~~--~~--~~i~liDTPG~~~ 81 (371)
..+|+++|+.|+|||||++.|+.... +.... ...++|.......+.+. ++ ..++||||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 46899999999999999999985421 11100 01245544444334332 22 5789999999765
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+ ...+ ..++..+|++|+|+|++++.+......+..+.. .. .|+++|+||+|..... .+...
T Consensus 83 F-------~~~v----~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~~---~~~~~ 143 (595)
T TIGR01393 83 F-------SYEV----SRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSAD---PERVK 143 (595)
T ss_pred H-------HHHH----HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCccC---HHHHH
Confidence 2 2222 334556799999999997776665544433332 12 3899999999975431 11111
Q ss_pred cccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 162 GLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. +...+ +.. +......||+++.|+.+|++.+.+.++..
T Consensus 144 ~e-----l~~~l---g~~---~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 144 KE-----IEEVI---GLD---ASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HH-----HHHHh---CCC---cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 11 22222 211 01123468899999999999998877653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=127.87 Aligned_cols=164 Identities=14% Similarity=0.169 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEE--------------e-----------eCCcEE
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTV--------------L-----------KDGQVV 71 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~i 71 (371)
+..+|+++|+.++|||||+++|+|....... ....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4589999999999999999999875321110 0011222221111000 0 014679
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
+++||||..+ +...+.. ....+|++++|+|++.+. .......+..+. .++. +|+++|+||+|..
T Consensus 83 ~liDtPGh~~-------f~~~~~~----g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-------LMATMLS----GAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-------HHHHHHH----HHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCC---CeEEEEEEccccC
Confidence 9999999532 3333333 334569999999999665 444455555443 3332 3799999999987
Q ss_pred CCchhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 151 EDNEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.. ......... +..++... +..+ .+.|+.++.++..|++.+...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~i------i~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENAPI------IPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCCeE------EEEECCCCCChHHHHHHHHHhCC
Confidence 54 222211111 22233211 1122 23678888999999999998665
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-13 Score=115.51 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|++|+|||||++.+++...... . ..|....+ ....+ ++ ..+.++||||...... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~-----------~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-Y---HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER-----------L 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c---CCcccceEEEEEEE-CCEEEEEEEEECCCChhccc-----------c
Confidence 4799999999999999999985544222 1 11211111 12222 33 3578999999643211 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc--CCchHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE--CPKPLKEI 172 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~--~~~~l~~~ 172 (371)
....+..+|++++|++++++-+-.. ..++..+....+. .|+++|.||+|..... ...+.+.... .......+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1123467799999999974332222 2355555554432 4999999999975321 1111100000 00112233
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
....+. .++ ..||+++.|++++++.+...+
T Consensus 142 ~~~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 142 AKEIGAKKYM------ECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHHhCCcEEE------EccCCCCCCHHHHHHHHHHHH
Confidence 333332 222 368889999999999988544
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=130.46 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC---CCccc-----------cC---------------CCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILG---RRAFK-----------AS---------------AGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~-----------~~---------------~~~~~~t~~~~~~~~~~~ 66 (371)
..+..+|+++|+.++|||||++.|+. ..... .+ ....+.|.......+.+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 44568999999999999999999984 21100 00 01135566666655555
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC---CCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR---FSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
++..+.||||||..+ +...+...+..+|++++|+|++.+ ........+..+ ..++. .|+++|
T Consensus 83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEE
Confidence 677899999999432 222233345678999999999865 222222222222 33342 389999
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
+||+|........++..... ++.++...+.... .....+.||+++.++.+
T Consensus 148 iNK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 99999874322333333332 5556655442100 00112357777777765
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-13 Score=129.80 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCC-----------------CCCccceeEEEEeEEeeCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFK--------------ASA-----------------GSSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (371)
.+|+++|+.++|||||++.|+...-.. .+. ...+.|.......+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 379999999999999999986332110 000 0124556665555555 67
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..++||||||+.+ +...+ ......+|++++|+|+..++...+...+..+.. ++. .++++|+||+|
T Consensus 80 ~~~~liDtPGh~~-------f~~~~----~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-------YTRNM----ATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-------HHHHH----HHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 7899999999543 22222 234557799999999987777666655555543 342 37899999999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 145 ~~~~ 148 (406)
T TIGR02034 145 LVDY 148 (406)
T ss_pred cccc
Confidence 8754
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=116.01 Aligned_cols=127 Identities=16% Similarity=0.184 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee-----------------------------------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT----------------------------------------- 57 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~----------------------------------------- 57 (371)
-+.|+|+|++|+||||++++|+|...++.+.+. +|..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~--~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCccccCCCc--ccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 357999999999999999999998643322110 1100
Q ss_pred ----------EEEEeEEeeCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCC-ceEEEEEEeCCCCCCHHH-HH
Q 040649 58 ----------CEMKTTVLKDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDG-IHAVLLVFSVRSRFSQEE-EA 123 (371)
Q Consensus 58 ----------~~~~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~-~d~vl~v~d~~~~~~~~~-~~ 123 (371)
.-...+..++...++||||||+..... ........+...+..+... .+.+|+|+|++..+...+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 000001111235789999999975421 1133444555555555553 458999999986677665 45
Q ss_pred HHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 124 AVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 124 ~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+.+... ..++++|+||+|....
T Consensus 184 ia~~ld~~-----~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDPQ-----GERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHc-----CCcEEEEEECCCCCCc
Confidence 55555432 2499999999998855
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-13 Score=119.19 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC-----C------------CCCccceeEEEEeEEee----CCcEEEEEeCCCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-----A------------GSSAITKTCEMKTTVLK----DGQVVNVIDTPGL 79 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~-----~------------~~~~~t~~~~~~~~~~~----~~~~i~liDTPG~ 79 (371)
+|+++|++|+|||||++.|++....... . ...+.|.......+.+. ....+++|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864432110 0 00122222222222221 2357899999997
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.+. ......++..+|++++|+|+....+......+..+.. .. .|+++|+||+|.+
T Consensus 82 ~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred cch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 653 1112233446699999999986666555444444332 12 4999999999976
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=118.78 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
-|++||-|++|||||++.++.... ....++.+|..+..-.+....+..+++-|.||+........-+...+.+.+..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 468999999999999999997665 334455566555554444446678999999999976555555667777777766
Q ss_pred cCCceEEEEEEeCCCCCC----HHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 101 KDGIHAVLLVFSVRSRFS----QEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~----~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.++++|+|++ +.. ..+... ...|..+-..-..+|.++|+||+|...+. +.++.+. +.+...
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~--------~~l~~~ 304 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELK--------KALAEA 304 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHH--------HHHHHh
Confidence 7999999998 222 233333 33344332223446999999999965441 3333222 223333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
++...+++ .|+.++.+++.|+..+..++...
T Consensus 305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 305 LGWEVFYL-----ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred cCCCccee-----eehhcccCHHHHHHHHHHHHHHh
Confidence 34333332 67888899999999998888765
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=109.91 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... ..+.... . ...+.+ ++ ..+.++||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~--~-~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGR--F-KKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccc--e-EEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 699999999999999998776543221 1111111 1 122333 44 35889999996420
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+....+. ...|+++|.||.|........+... ....+....+
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~~ 132 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDA-------RARQLCADMK 132 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHhC
Confidence 12346799999999996544333 3455555544321 1249999999998642111111110 1122333222
Q ss_pred -CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 -NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 -~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..++ ..||+++.||++++..+.+
T Consensus 133 ~~~~~------e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 133 RCSYY------ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCcEE------EEecCCCCCHHHHHHHHHh
Confidence 2222 3688899999999988753
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-13 Score=136.34 Aligned_cols=160 Identities=11% Similarity=0.093 Sum_probs=96.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CC-----------------CCCccceeEEEEeE
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SA-----------------GSSAITKTCEMKTT 63 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (371)
+..+..+|+++|++++|||||+|.|+...-... +. ...+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445668999999999999999999986432111 00 00244544544455
Q ss_pred EeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 64 VLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 64 ~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
.+ ++..++||||||+.+ +...+ ......+|++++|+|+..++...+...+..+.. ++. +++++|
T Consensus 100 ~~-~~~~~~liDtPG~~~-------f~~~~----~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-------YTRNM----VTGASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-------HHHHH----HHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence 55 677899999999532 22222 223457799999999987776655555555443 332 389999
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~ 198 (371)
+||+|....+...++..... +..++...+... ....+.|+.++.|+.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~---~~iipiSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHD---VTFIPISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCC---ccEEEEecccCCCcc
Confidence 99999875322333333332 444444333210 011235666667665
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=132.78 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-ccc---CC---------CCCccceeEEEEeEEee----CCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKA---SA---------GSSAITKTCEMKTTVLK----DGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~---~~---------~~~~~t~~~~~~~~~~~----~~~~i~liDTPG~~ 80 (371)
...+|+++|+.++|||||+..|+...- ... .. ...+.|.......+.|. .+..+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 457999999999999999999975321 000 00 01244444433333331 24578999999976
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~ 160 (371)
++ ..++. .++..+|++|+|+|++.+....+...+..+.. .. .|+++|+||+|..... ....
T Consensus 86 dF-------~~~v~----~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a~---~~~v 146 (600)
T PRK05433 86 DF-------SYEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAAD---PERV 146 (600)
T ss_pred HH-------HHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCccc---HHHH
Confidence 53 22232 33446699999999987776665544444332 12 3899999999975431 1111
Q ss_pred hcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 161 LGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
... +...+ +... ......||+++.|+.+|++.|...++..
T Consensus 147 ~~e-----i~~~l---g~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 KQE-----IEDVI---GIDA---SDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHH-----HHHHh---CCCc---ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 111 22222 2110 0123468889999999999998877753
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=129.26 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-ccccC-------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR-AFKAS-------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+|+++|+.|+|||||+++|++.. .+... ....++|.......+.+ ++..+++|||||..++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence 4789999999999999999999632 11111 11234555555555556 78899999999987631
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.. +..++..+|++|+|+|+..+........+..+... + .|.++|+||+|....
T Consensus 83 ------~~----v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 ------GE----VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA 135 (607)
T ss_pred ------HH----HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC
Confidence 12 23344567999999999876666666666655442 2 388999999997644
|
|
| >KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-10 Score=103.24 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=99.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC---cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+|+.||.+|.|||||+++|++...-....+..-.+.......+.+..+ ..++|+||.||+|.-...+ ..+.|+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~-Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKED-SYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccc-ccchHHH
Confidence 46899999999999999999997764222111111122222222222122 3789999999998632211 1111222
Q ss_pred HH------------------hh-hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh
Q 040649 96 CI------------------GM-AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK 155 (371)
Q Consensus 96 ~~------------------~~-~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~ 155 (371)
++ .. ....+|++||.+..+ +++...+.-.++.|... .++|.|+.|.|.... .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK--~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK--E 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH--H
Confidence 21 11 124789999999766 66777776666666543 288999999997766 6
Q ss_pred hHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHH
Q 040649 156 TLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTE 195 (371)
Q Consensus 156 ~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~ 195 (371)
.+..|... +..-+...|..++.|+......+....
T Consensus 193 eL~~FK~k-----imsEL~sngv~IYqfPtDdetva~~N~ 227 (406)
T KOG3859|consen 193 ELKRFKIK-----IMSELVSNGVQIYQFPTDDETVAKANS 227 (406)
T ss_pred HHHHHHHH-----HHHHHHhcCceeeeccchHHHHHHHHH
Confidence 66666554 444444556778888776555444333
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-12 Score=129.52 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~ 81 (371)
.+.|+++|++|+|||||+|+|.|..... ..+++.|........... .-..+++|||||..+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3589999999999999999999876422 122222222111111000 001278999999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
+ ..........+|++++|+|++.++.......+..+... . .|+++++||+|..
T Consensus 84 f-----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~---~--vpiIvviNK~D~~ 136 (586)
T PRK04004 84 F-----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR---K--TPFVVAANKIDRI 136 (586)
T ss_pred H-----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcCCc
Confidence 2 11122334567999999999977777777776665542 2 3899999999975
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.6e-13 Score=125.60 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=90.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHH
Q 040649 11 KPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 11 ~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
.+++.+.+..+++|+|.|++|||||+|.++..++- +.+...|+..-+.......-..+.+|||||+.|....+..+.
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve---vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE---VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhcccccccccc---cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 36777888899999999999999999999876652 222333433333322222445788999999998644332222
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCC--CCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVR--SRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~--~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+ +.....+ ..-..+|||++|++ ++++-. ...++..++.+|.++ |+|+|+||+|.+..
T Consensus 237 E-mqsITAL-AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 237 E-MQIITAL-AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP 296 (620)
T ss_pred H-HHHHHHH-HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc
Confidence 1 1111111 12225899999998 456644 466788899998875 99999999999877
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=124.58 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=108.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-CccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-SAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..++.|+++|+|++|||||+|+|+..+. +.+++ +++|.+..-..+.+ +|.+++++||.|+-..+. +.+...-..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~--~~iE~~gI~ 340 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESN--DGIEALGIE 340 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccC--ChhHHHhHH
Confidence 3568999999999999999999998887 44444 34455555555665 999999999999987221 122222233
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh-CCC------CCCeEEEEEeCCCCCCCchhhHHHHhcccCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF-GKK------IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~-~~~------~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~ 168 (371)
........+|++++|+|+....+..+....+.+...- |-. ...+++++.||.|...+- ..+.. ....+
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~----~~~~~-~~~~~ 415 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI----PEMTK-IPVVY 415 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc----ccccC-Cceec
Confidence 3344556779999999996445555555444444321 111 125899999999987551 00000 00001
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
... ......+++ ...++.+++++..|...+.+.+..
T Consensus 416 ~~~-~~~~~~~i~-----~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 416 PSA-EGRSVFPIV-----VEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ccc-ccCcccceE-----EEeeechhhhHHHHHHHHHHHHHH
Confidence 111 000011122 225667889999999988765554
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=112.61 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe---eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL---KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++|+++|++|||||||++.|.+........+ +......... ..+..+.||||||... ....+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~--- 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKL--- 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHH-------HHHHH---
Confidence 3699999999999999999998754332111 1111111111 1356799999999653 22222
Q ss_pred HhhhcCCc-eEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGI-HAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~-d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~ 152 (371)
...+... +++|||+|+.... ........++..++. .....|+++|.||+|....
T Consensus 66 -~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 -LETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred -HHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2234444 9999999998432 222222333322211 1112499999999998754
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=104.70 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|..|+||||||+..+-... +.... ..+..++....+.+ .++ .+.+|||.|- +.+...
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f-d~~Yq-ATIGiDFlskt~~l-~d~~vrLQlWDTAGQ-----------ERFrsl 87 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQ-ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQ-----------ERFRSL 87 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh-ccccc-ceeeeEEEEEEEEE-cCcEEEEEEEecccH-----------HHHhhh
Confidence 37899999999999999999985443 22111 11222333333433 343 7889999992 336666
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+..++.++.++|+|+|++++-+-+ ...+++.+..--|... ..+++|.||.|+.+...-+.++- ......
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg---------~~kAke 157 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEG---------ERKAKE 157 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHH---------HHHHHH
Confidence 777888999999999998554433 2445566655545431 36889999999886632222221 123333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+.-++ .+||+.+.+|..|+..|...++..
T Consensus 158 l~a~f~------etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 158 LNAEFI------ETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred hCcEEE------EecccCCCCHHHHHHHHHHhccCc
Confidence 344333 368889999999999988777653
|
|
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-12 Score=107.15 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=109.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||+++-++.....-.+..++. ..+.....+.. ++. .+.+|||.|-. .+..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi--GIDFk~kti~l-~g~~i~lQiWDtaGQe-----------rf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI--GIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------RFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceE--EEEEEEEEEEe-CCeEEEEEEEEcccch-----------hHHH
Confidence 45799999999999999999988655433322222 23344444555 443 68899999933 2344
Q ss_pred HHhhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....++.+++++++|+|+++.-+ .....+++.+.+.-...+ |+++|.||+|+.... .+ ....-+.+..
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~R--~V-------~~e~ge~lA~ 145 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEKR--QV-------SKERGEALAR 145 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeeccccccccc--cc-------cHHHHHHHHH
Confidence 45556778899999999984322 233558888888766555 999999999976531 11 1223456777
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..|.+++. +||+.+.+|.+.+-.+..-+.
T Consensus 146 e~G~~F~E------tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 146 EYGIKFFE------TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HhCCeEEE------ccccCCCCHHHHHHHHHHHHH
Confidence 77777665 688888999988887775554
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=108.85 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHH-HHhCCCccccC-CCCCcccee--EEEEe---------EEe-eCCcEEEEEeCCCCCCCCcc
Q 040649 20 RTVVLLGRTGNGKSATGN-SILGRRAFKAS-AGSSAITKT--CEMKT---------TVL-KDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin-~L~g~~~~~~~-~~~~~~t~~--~~~~~---------~~~-~~~~~i~liDTPG~~~~~~~ 85 (371)
.+|+++|.+|+|||||+. .+.+....... ......|.. ..+.. ... .....+.||||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 689999999999999996 55543321110 001111221 00100 012 12347889999996421
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH---
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY--- 160 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~--- 160 (371)
+ ...++.++|++|+|+|++++.+-... .++..+....+ . .|+++|.||+|+...........
T Consensus 80 -------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 80 -------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred -------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccccccchhhhcccc
Confidence 1 12357789999999999865444332 35555655432 3 39999999999753210000000
Q ss_pred -------hcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 161 -------LGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 161 -------l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
-........+.+....+.+++ ..||+++.|++++++.+.+
T Consensus 147 ~~~~~~~~~~V~~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 147 LARPIKNADILPPETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccCCccCHHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 000011223445555554333 3688899999999988764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-12 Score=123.66 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=90.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK--------------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||++.|++..... ......+.|.......+.+ ++..+++|||||+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 4567899999999999999999998532100 0111234555554444555 677899999999543
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
....+ ......+|++++|+|+..+........+..+... |. .++++++||+|.... ....+.+
T Consensus 157 -------f~~~~----~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 157 -------YVKNM----ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred -------HHHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH--HHHHHHH
Confidence 22223 3334567999999999877777777777665543 32 248899999998753 3322222
Q ss_pred cccCCchHHHHHHhc
Q 040649 162 GLECPKPLKEILQLC 176 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~ 176 (371)
. ..+..++..+
T Consensus 220 ~----~~i~~~l~~~ 230 (478)
T PLN03126 220 E----LEVRELLSSY 230 (478)
T ss_pred H----HHHHHHHHhc
Confidence 2 1266666654
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-12 Score=114.29 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCC--------------CCccceeEEEEeEEee---------CCcEEEEEeC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG--------------SSAITKTCEMKTTVLK---------DGQVVNVIDT 76 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~i~liDT 76 (371)
++|+++|+.++|||||+.+|+...-...... ..+.|.........+. .+..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999975431111000 0123322222222231 1567899999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
||..+. ......++..+|++++|+|+..+.+......+..+... . .|+++|+||+|..
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 998763 22233345567999999999987777766666655432 2 3899999999976
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=126.04 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC---cc------------------------c--cCCCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR---AF------------------------K--ASAGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~---~~------------------------~--~~~~~~~~t~~~~~~~~~~~ 66 (371)
..+..+|+++|+.++|||||+..|+... .. + ......+.|.......+.+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~- 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence 3456899999999999999999886311 00 0 0001135566555555555
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCCCCCCe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-------SQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
++..++||||||..+ +...+......+|++++|+|+..+. .......+..+.. +|. .+
T Consensus 83 ~~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQ 147 (446)
T ss_pred CCeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---Ce
Confidence 778999999999543 2333333445779999999998654 2444555555443 343 26
Q ss_pred EEEEEeCCCCCC--CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHH------------HHHHHHH
Q 040649 140 MIVVFTGGDDLE--DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQ------------QLLSLVN 205 (371)
Q Consensus 140 ~ilv~tk~D~~~--~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~------------~Ll~~i~ 205 (371)
+|+++||+|... .+...++..... +..++...+.... -.+..+.|+.++.++. .|++.+.
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~~~~-~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~ 221 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGYNPE-KVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALD 221 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCCCcc-cceEEEeecccCCCcccCCCCCcccchHHHHHHHh
Confidence 889999999432 222445544444 6666665442100 0011234556666664 3666665
Q ss_pred HH
Q 040649 206 AV 207 (371)
Q Consensus 206 ~~ 207 (371)
.+
T Consensus 222 ~~ 223 (446)
T PTZ00141 222 TL 223 (446)
T ss_pred CC
Confidence 54
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-13 Score=107.69 Aligned_cols=116 Identities=21% Similarity=0.175 Sum_probs=64.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-c-CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK-A-SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~-~-~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||+++|++..... . .....+.+.......... +...+.++|++|....... ...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~-------~~~--- 69 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQ-------HQF--- 69 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCT-------SHH---
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccc-------ccc---
Confidence 68999999999999999999887641 1 111122222222211111 3335889999996431111 011
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
....+|++++|+|.+++-+-.. ..++.++...-+.....|+++|.||.|
T Consensus 70 -~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 70 -FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 1334599999999984433222 223344444332111249999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=121.95 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+.|.++|+...|||||+..|-+..+ ...-.++.|.....+.+... +...++|+||||+-.+ ...-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~mR 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TAMR 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HHHH
Confidence 6799999999999999999998887 33445788877777777664 3479999999995431 1111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..-..-.|+++||+++++++.+...+.+..++.. . .|+++.+||+|..+.++.....-+.. ..-..+.++
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~--vP~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~~g 142 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---G--VPIVVAINKIDKPEANPDKVKQELQE-----YGLVPEEWG 142 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---C--CCEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhhcC
Confidence 2223446999999999999999999999988864 2 39999999999986644333322221 011122223
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.- ..| .+.||+++.|+++|++.+.-+
T Consensus 143 g~-v~~---VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 143 GD-VIF---VPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred Cc-eEE---EEeeccCCCCHHHHHHHHHHH
Confidence 22 221 347999999999999987644
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=99.93 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=107.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|..||||||+++.++|.+. . ...+|...+..+..+ ++..++++|.-|-- .+..++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~~W~ 78 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRSYWK 78 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHHHHH
Confidence 58999999999999999999999874 2 234466677777777 88999999998843 3667777
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCC-chhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLED-NEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~-~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.++...|++|||+|..++..-.+ ....|+..+... +..|++++.||.|..+. ...++...+. +..+.+.
T Consensus 79 nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~------L~~l~ks 150 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALD------LEELAKS 150 (185)
T ss_pred HhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhC------HHHhccc
Confidence 78888899999999975443322 333333333211 23599999999997744 1123332222 6777777
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
|+.+++.. |+.++.++.+-++++.+
T Consensus 151 ~~~~l~~c------s~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 151 HHWRLVKC------SAVTGEDLLEGIDWLCD 175 (185)
T ss_pred cCceEEEE------eccccccHHHHHHHHHH
Confidence 77777654 44455555555555553
|
|
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=125.84 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=102.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC-CCCccceeEEEEeE---------------Eee-------------
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSAITKTCEMKTT---------------VLK------------- 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-~~~~~t~~~~~~~~---------------~~~------------- 66 (371)
..+..+|+++|+...|||||+.+|+|.....-.. ...+.|....+... .++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3466899999999999999999999875422110 01122211111100 000
Q ss_pred ----CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHhCCCCCCeEE
Q 040649 67 ----DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-FSQEEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 67 ----~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i 141 (371)
....+++|||||.. . +.+.+......+|++++|+|+..+ ........+..+ ..+|. .++|
T Consensus 111 ~~~~~~~~i~~IDtPGH~-------~----fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHD-------I----LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHH-------H----HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEE
Confidence 12478999999943 2 333333344567999999999864 344444444433 33443 3899
Q ss_pred EEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 142 lv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+|+||+|.... ..+.+.... ++.++..+.. ......+.||.++.|++.|++.|...++.
T Consensus 176 VvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 176 ILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 99999998754 344433332 4444432211 11122447888899999999999976654
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=122.03 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=118.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-------------CCCCccceeEEEEeEEeeC--CcEEEEEeCCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-------------AGSSAITKTCEMKTTVLKD--GQVVNVIDTPGLFD 81 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~--~~~i~liDTPG~~~ 81 (371)
+...++.+|-+...|||||..+|+...-+... ..-.++|...+..+..+.+ ...+++|||||..|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45678999999999999999997632211110 0114788888877777733 26899999999998
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
++.. ..+.+..+ +++|+|+|+..+........+....+ ... .+|.|+||+|....+.+.+.
T Consensus 138 Fs~E-------VsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe---~~L--~iIpVlNKIDlp~adpe~V~--- 198 (650)
T KOG0462|consen 138 FSGE-------VSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE---AGL--AIIPVLNKIDLPSADPERVE--- 198 (650)
T ss_pred ccce-------ehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH---cCC--eEEEeeeccCCCCCCHHHHH---
Confidence 7543 33444444 99999999998877766555444333 233 89999999998766444333
Q ss_pred cccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 162 GLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.+ +..++..++..+.. .||++|.++.+||+.|.+.++...+
T Consensus 199 ~q-----~~~lF~~~~~~~i~------vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 199 NQ-----LFELFDIPPAEVIY------VSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HH-----HHHHhcCCccceEE------EEeccCccHHHHHHHHHhhCCCCCC
Confidence 22 56677777766555 6888999999999999999887655
|
|
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=100.47 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|.+|+|||||+-+++...+-+.. +..+..+........ +| ..+.||||.|.- .+.-.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~--~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqE-----------rFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLH--PTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQE-----------RFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccC--CceeeeeEEEEEEEE-cCceEEEEEEeccchH-----------hhhcc
Confidence 379999999999999999998865542221 121223344444444 44 378999999943 24445
Q ss_pred HhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++.++.++|+|.|++.+ |... ..++..+.....++ ..-.++|.||+|.-.....+-++-+ .+..
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG~---------kfAr 145 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEGL---------KFAR 145 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhH-HHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHHH---------HHHH
Confidence 56778899999999999854 3333 23444444433222 1246789999996533111222111 1222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
. .+..++ ..||++..+++..++-+..-
T Consensus 146 ~--h~~LFi----E~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 146 K--HRCLFI----ECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred h--hCcEEE----EcchhhhccHHHHHHHHHHH
Confidence 2 122222 35788889998888766543
|
|
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=120.73 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccc-eeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAIT-KTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...+|+|+|.+|+|||||||+|.|...-..+....+++ ++.....+..+.-..+++||.||.+.+..+.. .+...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHHH
Confidence 35799999999999999999998754433333333331 12222233343456799999999986544433 23332
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC-CC----chhhH--HHHhcccCCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL-ED----NEKTL--EDYLGLECPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~-~~----~~~~l--~~~l~~~~~~~l 169 (371)
+. ....|.+|++.+. +|+..+..+...++.. | +|+.+|-||+|.. .. .+.++ ++.+.. .....
T Consensus 110 ~~--~~~yD~fiii~s~--rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR~~c 179 (376)
T PF05049_consen 110 VK--FYRYDFFIIISSE--RFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IRENC 179 (376)
T ss_dssp TT--GGG-SEEEEEESS--S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HHHHH
T ss_pred cc--ccccCEEEEEeCC--CCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcccCHHHHHHH-HHHHH
Confidence 22 3345877776653 6999999888888875 3 3999999999951 00 00111 112221 11112
Q ss_pred HHHHHh---cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 170 KEILQL---CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 170 ~~~~~~---~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.+.+.. +..++|++++..... .....|.+.+..-++.+..
T Consensus 180 ~~~L~k~gv~~P~VFLVS~~dl~~----yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 180 LENLQKAGVSEPQVFLVSSFDLSK----YDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHCTT-SS--EEEB-TTTTTS----TTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHcCCCcCceEEEeCCCccc----CChHHHHHHHHHHhHHHHH
Confidence 222222 345788888765433 5677777777766555433
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=119.38 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=119.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+.|-++|+...|||||+.+|-+..+ .....+++|.....+.+.++.|..++|.||||.-- +...-.
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-----------F~aMRa 219 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-----------FSAMRA 219 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcHHH-----------HHHHHh
Confidence 46889999999999999999998877 33446788888777778888899999999999542 222222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
......|.+++|+.++++.-+...+.+...+.. ..|+|+.+||+|..+.+......-+.. ..-.++.+|+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~GG 289 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLGG 289 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcCC
Confidence 334567999999999988988888888877754 249999999999886644433322221 1224555666
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+.. .+.||+++.+++.|.+.+.-
T Consensus 290 dVQv----ipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 290 DVQV----IPISALTGENLDLLEEAILL 313 (683)
T ss_pred ceeE----EEeecccCCChHHHHHHHHH
Confidence 5544 34788999999999987653
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=128.41 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCccccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAFKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
....++|+|+|+.++|||||+|.|+ |........ ...++|.......+.+ .+..+++|||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 4456799999999999999999996 432110000 1235566665566666 7889999999997
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.++ ..+... +...+|++|+|+|+..+....+...+..+... + .|+++++||+|....
T Consensus 86 ~~f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 542 223333 34455999999999888888888888877654 2 388999999998755
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=98.36 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|++||..|+|||.|++.++....|+......++ ......+.. .+...+.||||.|-- .+.....
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigv--dfmiktvev~gekiklqiwdtagqe-----------rfrsitq 74 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGV--DFMIKTVEVNGEKIKLQIWDTAGQE-----------RFRSITQ 74 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeee--eEEEEEEEECCeEEEEEEeeccchH-----------HHHHHHH
Confidence 58999999999999999999977665543333333 233344444 133478999999932 2444455
Q ss_pred hhcCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++..+|++++|.|++. +.-+.-..++..+......+. -.|+|.||+|..+. ..+... +.+-+....
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~q--------igeefs~~q 142 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQ--------IGEEFSEAQ 142 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHH--------HHHHHHHhh
Confidence 56777899999999983 333444677888887766554 67899999997644 222211 222222212
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.-++ ...||+...+++.|+..+.
T Consensus 143 dmyf-----letsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 143 DMYF-----LETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhh-----hhhcccchhhHHHHHHHHH
Confidence 2222 2367777889999887765
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.3e-12 Score=129.69 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc---cc----CC---------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF---KA----SA---------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~---~~----~~---------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
...+|+|+|+.|+|||||++.|+...-. .. +. ...+.|.......+.+ .+..+++|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4579999999999999999999743210 00 00 0123344444455556 788999999999765
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
. .. ....++..+|++++|+|++.+........+..+... . .|+++|+||+|....
T Consensus 86 f-------~~----~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-------TG----EVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGA 140 (687)
T ss_pred H-------HH----HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCC
Confidence 2 12 223344566999999999877776666666655432 2 389999999998754
|
|
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=128.20 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=84.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc---CCC-------------CCccceeEEEEeEEeeCCcEEEEEeCCC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKA---SAG-------------SSAITKTCEMKTTVLKDGQVVNVIDTPG 78 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~---~~~-------------~~~~t~~~~~~~~~~~~~~~i~liDTPG 78 (371)
+....++|+|+|++++|||||+|+|++..-... ... ..++|.......+.+ .+..+++|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCC
Confidence 344567999999999999999999974221100 000 135566666666666 788999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+.. .+. ..+...+|++++|+|+..+....+...+..+... + .|+++|+||+|....
T Consensus 85 ~~~~~-------~~~----~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFT-------VEV----ERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccchh-------HHH----HHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 87631 122 2334456999999999877777777777665543 2 389999999998754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=123.95 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC--CCccccCC-----------C-------CCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG--RRAFKASA-----------G-------SSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g--~~~~~~~~-----------~-------~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
...+|+|+|++|+|||||++.|+. ......+. + ..+.|.......+.+ ++..+++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 457999999999999999999862 11100000 0 012333344444555 78899999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|..+. ..+... ++..+|++|+|+|+..+.......++...... . .|+++++||+|....
T Consensus 88 G~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDF-------SEDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR---D--TPIFTFINKLDRDGR 146 (526)
T ss_pred Cchhh-------HHHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCccccc
Confidence 97653 122222 33456999999999877766655555544332 2 399999999997654
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=106.06 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeE-EeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTT-VLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|+.|+|||||++.+.+........ .|........ .... ...+.+|||+|..+ +...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHH
Confidence 799999999999999999999887643321 1111111111 1112 34688999999542 4455
Q ss_pred HhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...++.+++++++|+|... ++......+...+....+.. .|+++|.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 6667889999999999873 23333344555556554322 499999999998765
|
|
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=99.15 Aligned_cols=155 Identities=16% Similarity=0.218 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc-----CCCCCc---cceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA-----SAGSSA---ITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
..+|+|+|+.|+||||++..+.-...... ..+..+ .|....+..+.+.++..++++||||...
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------- 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------- 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH---------
Confidence 46899999999999999999986653221 222223 4555555566664558999999999543
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
+.-.+.....++.++++++|.+.+.+......+..+..... .|+++++||.|+.+. ..++.++
T Consensus 81 --F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a-----------~ppe~i~ 143 (187)
T COG2229 81 --FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA-----------LPPEKIR 143 (187)
T ss_pred --HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC-----------CCHHHHH
Confidence 23333445667899999999886666666777777775533 399999999998866 2333455
Q ss_pred HHHHhc--CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 171 EILQLC--DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 171 ~~~~~~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+++..+ ..+++.. ++..+.+..+.++.+.
T Consensus 144 e~l~~~~~~~~vi~~------~a~e~~~~~~~L~~ll 174 (187)
T COG2229 144 EALKLELLSVPVIEI------DATEGEGARDQLDVLL 174 (187)
T ss_pred HHHHhccCCCceeee------ecccchhHHHHHHHHH
Confidence 566655 3344433 3333455555555443
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=127.62 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=84.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc---cccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA---FKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
...++|+++|+.++|||||+++|+...- ..... ...++|.......+.+ ++..+++|||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 3457899999999999999999974211 00000 1235566666666666 88899999999975
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+ ...+. ..+...+|++|+|+|+..++...+...+..+... + .|+++++||+|....
T Consensus 85 ~-------f~~e~----~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 D-------FTIEV----ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHHHH----HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 4 22233 3334456999999999988888887777776543 2 388999999998854
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=111.02 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~ 81 (371)
....|+|||.||+|||||+|+|++... .....+++|..+....+.+++. ..+.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 457899999999999999999998875 2233355565555544444221 2489999999986
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
...........+...+ ..+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 5433334444454444 4569999999973
|
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=104.30 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..++..|+|+|++|+|||||+|.|++...........+ + . .... ..+..++++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i--~i~~-~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I--TVVT-GKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--E--EEEe-cCCceEEEEeCCchH----------HHHHH
Confidence 45567899999999999999999997633211111111 1 1 1112 267789999999832 12223
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLED 152 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~ 152 (371)
.+ ..+|++++|+|++.++...+..++..+... | .| +++|+||+|....
T Consensus 100 ~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 IA----KVADLVLLLIDASFGFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFKK 148 (225)
T ss_pred HH----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCCc
Confidence 32 456999999999877877777777776643 3 25 5569999998744
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-11 Score=101.21 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.-++|+++|.+|+|||||+|...............+ .......+.. +++ .+.||||.|-- .+..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg--adFltKev~V-d~~~vtlQiWDTAGQE-----------RFqs 73 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG--ADFLTKEVQV-DDRSVTLQIWDTAGQE-----------RFQS 73 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc--hhheeeEEEE-cCeEEEEEEEecccHH-----------Hhhh
Confidence 347999999999999999999987765332111111 1122222223 333 67899999932 2333
Q ss_pred HHhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.-...+.++|++++|+|++.+ +...+...-+.|...-+. +-.-|.||+.||+|........+ .....+..
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V-------S~~~Aq~W 146 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV-------SEKKAQTW 146 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee-------eHHHHHHH
Confidence 345678899999999999843 333333333444433221 22349999999999754310011 11123334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...-+ .+.+| ..||+...+|.+.++.+....-.+.
T Consensus 147 C~s~g-nipyf----EtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 147 CKSKG-NIPYF----ETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred HHhcC-CceeE----EecccccccHHHHHHHHHHHHHhcc
Confidence 43333 33444 3688888999999999887666554
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.9e-11 Score=120.34 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC--CCccccCCC------------------CCccceeEEEEeEEeeCCcEEEEEeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG--RRAFKASAG------------------SSAITKTCEMKTTVLKDGQVVNVIDT 76 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~i~liDT 76 (371)
....+|+|+|++|+|||||++.|+. ......+.. ..+.|.......+.+ .+..++++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 3457999999999999999999852 111100000 013344444445555 7889999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
||..+. .... ..++..+|++|+|+|+..++......++..+.. . . .|+++++||+|....
T Consensus 88 PG~~df-------~~~~----~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~--~--~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-------SEDT----YRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-R--D--TPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-------HHHH----HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-c--C--CCEEEEEECccccCC
Confidence 997542 1222 333456799999999987776665656554443 1 2 399999999997644
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=110.86 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--------------------eC---CcEEEEEeC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~i~liDT 76 (371)
.+|++||.+|+|||||+|+|++..... ...+++|..+....... .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 479999999999999999999886522 22334443333322111 01 135789999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
||+.............+...+. .+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 9997643222334444444444 559999999985
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-11 Score=117.93 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=85.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCcc-----------c---------------cCCCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAF-----------K---------------ASAGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~-----------~---------------~~~~~~~~t~~~~~~~~~~~ 66 (371)
..+..+|+++|+.++|||||+-.|+ |.... . ......++|.......+.+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~- 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence 3566899999999999999998876 21100 0 0001135566665555555
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCCCCCCe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-FS------QEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~ 139 (371)
.+..++++||||..+ +...+......+|++|+|+|+..+ +. ......+..+.. +|. .+
T Consensus 83 ~~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQ 147 (447)
T ss_pred CCEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---Cc
Confidence 778999999999543 333334445677999999999853 21 233333333322 343 26
Q ss_pred EEEEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhcC
Q 040649 140 MIVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 140 ~ilv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
+|+++||+|.... ....+++.+.. ++.++...+
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g 182 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG 182 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence 8999999996522 11233433443 666666554
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=95.99 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=99.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+++++|.+|+|||.|+...+.....+....+.++ +.....+.. .....+.||||.|... +....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGv--efg~r~~~id~k~IKlqiwDtaGqe~-----------frsv~ 72 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGV--EFGARMVTIDGKQIKLQIWDTAGQES-----------FRSVT 72 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeee--eeceeEEEEcCceEEEEEEecCCcHH-----------HHHHH
Confidence 378999999999999999999977653332222222 222223333 1234789999999432 45556
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++-++|+|+|++.+-+ ..-..+|.-++......+ .++++.||+|+......+-+ .-....+..
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~rR~Vs~E---------EGeaFA~eh 141 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEARREVSKE---------EGEAFAREH 141 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhccccccHH---------HHHHHHHHc
Confidence 667888999999999984422 222445666666543443 78899999997654211111 122333332
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+ ++|- ..||++++++++.+.-+.
T Consensus 142 g---Lifm---ETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 142 G---LIFM---ETSAKTAENVEEAFINTA 164 (216)
T ss_pred C---ceee---hhhhhhhhhHHHHHHHHH
Confidence 2 2222 579999999999887665
|
|
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-11 Score=109.46 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--------------CCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--------------DGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~i~liDTPG~~~~~ 83 (371)
...+|+|+|.+|+|||||++.+++...........+.+ .....+.+. ....+.|+||+|-..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d--~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr-- 95 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCT--VGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER-- 95 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeee--EEEEEEEECCcccccccccccCCceEEEEEEECCCChh--
Confidence 34799999999999999999999776422211111222 111222221 123589999999532
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC----------CCCCeEEEEEeCCCCCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK----------KIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ilv~tk~D~~~ 151 (371)
+..+...++.+++++|+|+|++++-+-.. ..++..+....+. ....|++||.||+|+..
T Consensus 96 ---------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 ---------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ---------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 33444556788999999999985433322 2344455443210 01248999999999754
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=111.59 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCccc-----------cCCC---------------CCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAFK-----------ASAG---------------SSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~-----------~~~~---------------~~~~t~~~~~~~~~~~ 66 (371)
.++..+++|+|+..+|||||+-.|+ |.-... .+.. ..++|.+.....+..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet- 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET- 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence 4567899999999999999997765 221100 0000 026676666666665
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
+...++|+|+||.-| +..++. .....+|+.++|+|++.+ .....++-+ .|...+|. ..
T Consensus 83 ~k~~~tIiDaPGHrd-------FvknmI----tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRD-------FVKNMI----TGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQ 147 (428)
T ss_pred CCceEEEeeCCchHH-------HHHHhh----cchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ce
Confidence 777899999999544 222232 334456999999999854 344444443 44444564 49
Q ss_pred EEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 140 ~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+|+++||+|..+-+...+++.... +..+++.||-
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~ 181 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGY 181 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCC
Confidence 999999999987665667766665 6677777763
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=96.70 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.++++||++|+|||||+++|-|....... |.- +.+ ... ..|||||.+- ....+...+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQA-----ve~-~d~--~~IDTPGEy~-------~~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQA-----VEF-NDK--GDIDTPGEYF-------EHPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------cce-----eec-cCc--cccCCchhhh-------hhhHHHHHHHH
Confidence 58999999999999999999998864321 211 222 111 3699999653 22334455555
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|++++|..++++-+...- . |-....+|+|-|+||.|+.++ ..++ ..+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p----~----f~~~~~k~vIgvVTK~DLaed--~dI~---------~~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPP----G----FLDIGVKKVIGVVTKADLAED--ADIS---------LVKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCCc----c----cccccccceEEEEecccccch--HhHH---------HHHHHHHHcCCc
Confidence 66788999999988754222111 1 111223489999999998865 3333 144556655643
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.++. .|+....|+++|++++...
T Consensus 122 ~IF~-----~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 122 PIFE-----TSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ceEE-----EeccCcccHHHHHHHHHhh
Confidence 3322 3344568999999887643
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=109.96 Aligned_cols=131 Identities=12% Similarity=0.159 Sum_probs=82.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CCCCc---cceeEEE---EeEEeeCC----cEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSA---ITKTCEM---KTTVLKDG----QVVN 72 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~~~~---~t~~~~~---~~~~~~~~----~~i~ 72 (371)
+....|+|+|+.++|||||||.+++.-+.+.. .+..+ .|+++.+ ........ .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34589999999999999999999998322211 12233 4555555 33333222 5889
Q ss_pred EEeCCCCCCCCcchHHHHHH--------------HHH-----HHhhhcCCceEEEEEE-eCC------CCCCHHHHHHHH
Q 040649 73 VIDTPGLFDSSAESEYVSKE--------------IAK-----CIGMAKDGIHAVLLVF-SVR------SRFSQEEEAAVH 126 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~e--------------i~~-----~~~~~~~~~d~vl~v~-d~~------~~~~~~~~~~l~ 126 (371)
+|||+|+.+.+.....-... +.. ........++..|+|. |.+ ..+...+..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998754321111111 000 0111123668888888 764 356777888888
Q ss_pred HHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 127 RLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.|++. .+|+++|+|+.|-..+
T Consensus 175 eLk~~-----~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 175 ELKEL-----NKPFIILLNSTHPYHP 195 (492)
T ss_pred HHHhc-----CCCEEEEEECcCCCCc
Confidence 88865 2499999999995433
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=99.09 Aligned_cols=118 Identities=20% Similarity=0.181 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||-|+-..+.........++.+ .......... ++. ...||||.|.- .+..
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG--vef~t~t~~v-d~k~vkaqIWDTAGQE-----------RyrA 78 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG--VEFATRTVNV-DGKTVKAQIWDTAGQE-----------RYRA 78 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCccccccee--EEEEeeceee-cCcEEEEeeecccchh-----------hhcc
Confidence 346899999999999999999987766333222222 2233333333 444 67899999933 2445
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
....++.++.+.++|.|++.+.+-. -..+|..|+.+..+.+ ++++|.||+|+..
T Consensus 79 itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 79 ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 5667788999999999998444433 3567777777776666 9999999999753
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-11 Score=106.15 Aligned_cols=120 Identities=14% Similarity=0.223 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...|+|+|++|||||+|+..|.......+..+.. .... ......+..+.|||+||..... ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e-----~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME-----NNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SS-----EEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc-----CCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 3689999999999999999998664433322211 1111 1111245689999999976532 1222221
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~ 152 (371)
.....+.+||||+|+. .+...-....+.|..++- .....|++|+.||.|....
T Consensus 71 -~~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 -KYLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp -HHHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred -hchhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1244579999999987 233333444444444331 1223599999999998865
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=93.40 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEE-eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTV-LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+++++|.+.+|||||+-+-+|....+.-.+..++. .....+. ......+.|+||.|.-. +....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid--FKvKTvyr~~kRiklQiwDTagqEr-----------yrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVYRSDKRIKLQIWDTAGQER-----------YRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeee--EEEeEeeecccEEEEEEEecccchh-----------hhHHH
Confidence 3589999999999999999999877633322223322 2222221 11223789999999431 33444
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.+++++|+++|+++.-+ ..-..+...++...-.. -|+|+|.||||+-.+.--+. +....+....
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~---------e~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISH---------ERGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeH---------HHHHHHHHHh
Confidence 567889999999999983221 11233444454443233 39999999999765521111 1234455555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|-.++ ..|++..-++.++++.+...+-.
T Consensus 157 GfefF------EtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 157 GFEFF------ETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ChHHh------hhcccccccHHHHHHHHHHHHHH
Confidence 54333 35677778888888887765543
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-10 Score=104.93 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=54.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--------------------e---CCcEEEEEeCCC
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--------------------K---DGQVVNVIDTPG 78 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~i~liDTPG 78 (371)
|+++|.+++|||||+|+|++..... ...+.+|..+......+ . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~--~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEI--ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcc--cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999876521 22233333333221111 0 124689999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
+.............+...+ ..+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9654322223334444444 4559999999986
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=91.09 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.++++|.+|+|||||+-.+..... .. .....+..+........+ +...+.|+||.|- +.+......
T Consensus 10 kllIigDsgVGKssLl~rF~ddtF-s~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtitst 76 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTF-SG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITST 76 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccc-cc-ceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHHH
Confidence 568999999999999988875543 21 111111222333344442 2337889999992 224444556
Q ss_pred hcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
++.++|++++|.|+++.-+ ..-..+|+.++..++. .|-++|.||.|..+.. .++ ....+.+....+.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~Rr--vV~-------t~dAr~~A~~mgi 144 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERR--VVD-------TEDARAFALQMGI 144 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccce--eee-------hHHHHHHHHhcCc
Confidence 7889999999999984322 2235566666665552 4899999999976541 111 1112334443344
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.++. .|++...+++..+..|...+..
T Consensus 145 e~FE------TSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 145 ELFE------TSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhee------hhhhhcccchHHHHHHHHHHHH
Confidence 3332 6777778888888887765543
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=122.48 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=79.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------CccceeEEEEeEEee---------CCcEEE
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--------------SAITKTCEMKTTVLK---------DGQVVN 72 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~---------~~~~i~ 72 (371)
.....+|+++|+.++|||||+++|++..-....... .+.|.........+. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345679999999999999999999863321110000 122222222223331 145799
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
++||||+.+. ..+ +..+...+|++|+|+|+..++...+...++.+... . .|+++++||+|..
T Consensus 96 liDtPG~~~f-------~~~----~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~---~--~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDF-------SSE----VTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE---R--IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhH-------HHH----HHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc---C--CCEEEEEEChhhh
Confidence 9999998652 222 34445677999999999988888887777766643 2 3999999999987
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=94.70 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+++|..-+|||||+=..+...+ .....+. ....+........ ..-.+.||||.|.-. +...-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF-n~kHlsT-lQASF~~kk~n~ed~ra~L~IWDTAGQEr-----------fHALG 79 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF-NCKHLST-LQASFQNKKVNVEDCRADLHIWDTAGQER-----------FHALG 79 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc-chhhHHH-HHHHHhhcccccccceeeeeeeeccchHh-----------hhccC
Confidence 37899999999999999877664433 2211000 0000111111221 223688999999432 33333
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.+.+++|+|+|++++-+ ..-+.++..|+..+|+.+ .++||.||+|+-.....+..+ ...+.+..
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAesv 148 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQE---------AEAYAESV 148 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHH---------HHHHHHhh
Confidence 456889999999999985433 224677888999999887 999999999965442222221 23345555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
|..++. .||+...||.+|++.+...+
T Consensus 149 GA~y~e------TSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 149 GALYME------TSAKDNVGISELFESLTAKM 174 (218)
T ss_pred chhhee------cccccccCHHHHHHHHHHHH
Confidence 555554 68888899999999887543
|
|
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=102.64 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHH-HHHHhCCCCCCeEEEEEeC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHR-LQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~tk 146 (371)
+..+.||||+|...... . + .. -+|.+++|++.. +..+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~~---~----i---~~----~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET---A----V---AG----MVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh---H----H---HH----hCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 46789999999885311 1 1 22 359999997532 2333333222 2222 34899999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee-cCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+|.... ......... +...+.....+...+ .+....|+.++.|+++|++.+....+
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998755 233333322 333443222110000 11223677788999999999998877
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=120.85 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=79.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------CccceeEEEEeEEee---------------
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--------------SAITKTCEMKTTVLK--------------- 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~--------------- 66 (371)
....++|+|+|+.++|||||+++|+...-....... .+.|.......+.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345689999999999999999999743321110000 123333222223331
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+++|||||+.| +..+.. .+...+|++|+|+|+..++.......++.+... . .|+++++||
T Consensus 96 ~~~~inliDtPGh~d-------F~~e~~----~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~--~p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVD-------FSSEVT----AALRITDGALVVVDCIEGVCVQTETVLRQALGE---R--IRPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHH-------HHHHHH----HHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---C--CCEEEEEEC
Confidence 256789999999765 223333 334556999999999988887777777666543 2 399999999
Q ss_pred CCCC
Q 040649 147 GDDL 150 (371)
Q Consensus 147 ~D~~ 150 (371)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9987
|
|
| >KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=103.07 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=71.9
Q ss_pred EEEEEeCCCCCCC---CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH---HHHHHHHHHHhCCCCCCeEEEE
Q 040649 70 VVNVIDTPGLFDS---SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE---EAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 70 ~i~liDTPG~~~~---~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ilv 143 (371)
...||||||.... +.+.. -|...+ +...+.+|+||+|.. +-+... ..++-...-++..+. |+|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGs----IIte~l--ass~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktkl--p~ivv 187 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGS----IITETL--ASSFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTKL--PFIVV 187 (366)
T ss_pred CEEEEcCCCceEEEEecCCcc----chHhhH--hhcCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhccC--CeEEE
Confidence 5789999996532 22211 122222 234678999999976 222222 222222222333343 99999
Q ss_pred EeCCCCCCCchhhHHHHhcc----------cCCchHHHHHHhcCCceEeecC---cchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 144 FTGGDDLEDNEKTLEDYLGL----------ECPKPLKEILQLCDNRWVLFDN---KTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~----------~~~~~l~~~~~~~~~r~~~f~~---~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+||.|..+. .-..+++.+ ....++..+.....--+-.|-+ ...+|+.+|.|.++++..|...+.+
T Consensus 188 fNK~Dv~d~--~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 188 FNKTDVSDS--EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred Eeccccccc--HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 999998766 322233221 0111222222111100011111 1235778899999999999998887
Q ss_pred cCCCCCCh
Q 040649 211 NGGQPYTN 218 (371)
Q Consensus 211 ~~~~~y~~ 218 (371)
+.. .|.+
T Consensus 266 y~~-~ykp 272 (366)
T KOG1532|consen 266 YEE-EYKP 272 (366)
T ss_pred HHH-Hhhh
Confidence 533 3443
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=104.86 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=59.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc----------------EEEEEeCCCCCCCCcc
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ----------------VVNVIDTPGLFDSSAE 85 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~i~liDTPG~~~~~~~ 85 (371)
|++||.|++|||||+|+|+|.... ....+++|.........+++.+ .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~--~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc--cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998862 2233555555554444442221 4899999999865433
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
....+..+...+ ..+|++++|+|+.
T Consensus 79 ~~glg~~fL~~i----~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHI----REVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence 334444454443 4569999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=113.95 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=88.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCccccCCC-------------CCccceeEEEEeEEeeCC-cEEEEEeCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAFKASAG-------------SSAITKTCEMKTTVLKDG-QVVNVIDTPG 78 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~-~~i~liDTPG 78 (371)
....++|+++|+.++|||||..+|+ |......... ..++|......+..| .+ ..+++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 3455899999999999999998876 2221100011 026677677777777 64 9999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.|+ ..+..+.+.. +|++++|+|+..+........++.+... .+ |.++++||+|.+..
T Consensus 86 HVDF-------t~EV~rslrv----lDgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDF-------TIEVERSLRV----LDGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA 143 (697)
T ss_pred cccc-------HHHHHHHHHh----hcceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc
Confidence 9985 2334444443 4999999999988888888888777654 33 99999999998866
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.2e-10 Score=100.88 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|+.||||||+.+.|.+...+.. ...-+.|.......+.......+.+||.||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 589999999999999999997765432 23344566566555544355699999999987642210 00011223
Q ss_pred cCCceEEEEEEeCC-CCCCHHHHHH---HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 101 KDGIHAVLLVFSVR-SRFSQEEEAA---VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 101 ~~~~d~vl~v~d~~-~~~~~~~~~~---l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+++++|||+|+. ..+...-..+ +..+... .+.+ .+.+++.|+|.+.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~--~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNI--KVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT---EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCC--eEEEEEeecccCCH
Confidence 56779999999998 3333332222 3333333 3333 89999999998865
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=119.70 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC--------------ccccCCCCCccceeEEEEe----EEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR--------------AFKASAGSSAITKTCEMKT----TVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~--------------~~~~~~~~~~~t~~~~~~~----~~~~~~~~i~liDTPG~ 79 (371)
...+|+++|+.|+|||||++.|+... .+.......+.|....... +.+ .+..+++|||||+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 45799999999999999999986321 0000000122233222211 223 5678999999998
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+.. ... ..++..+|++|+|+|+..+....+...+..+... . .|.++|+||+|....
T Consensus 97 ~~f~-------~~~----~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFG-------GDV----TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLIN 153 (720)
T ss_pred cccH-------HHH----HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhcccc
Confidence 7631 122 2344566999999999877766666665554332 2 277899999997643
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-10 Score=106.00 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~~~ 83 (371)
.+|++||.|++|||||+|+|+|... .....+++|..+......+++. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 5899999999999999999999874 2223345555554433333221 258999999998754
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.........+...+ ..+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 33334444454443 4569999999985
|
|
| >KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-08 Score=95.03 Aligned_cols=130 Identities=18% Similarity=0.308 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee----CC-------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK----DG------------------------- 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~------------------------- 68 (371)
..+-|+++|+.+.|||||||.|++.+.+....++.++|........... +|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3467999999999999999999999886554555544433332211000 01
Q ss_pred ----------cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCC
Q 040649 69 ----------QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIF 137 (371)
Q Consensus 69 ----------~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~ 137 (371)
..++||||||+.+.....-...-.+...+......+|.|++++|+. -.++++...++..|+ |..
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E-- 211 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE-- 211 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc--
Confidence 2489999999987543322333445666667778899999999987 446666666666665 333
Q ss_pred CeEEEEEeCCCCCCC
Q 040649 138 DYMIVVFTGGDDLED 152 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~ 152 (371)
+.+-||+||.|.++.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 389999999998866
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=102.56 Aligned_cols=159 Identities=21% Similarity=0.241 Sum_probs=115.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK-ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.|+..|+--.|||||+.+++|...-. ......+.|.+..++.... .+..+.+||.||+.+ +...+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 57889999999999999999876421 1223457788888887777 555899999999764 3444444
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++|..++|+++++++.....+.+..|. +||.. +.++|+||+|..++ ..++..+. .++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi~---~giivltk~D~~d~--~r~e~~i~--------~Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGIK---NGIIVLTKADRVDE--ARIEQKIK--------QILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCCC---ceEEEEeccccccH--HHHHHHHH--------HHHhhcc--
Confidence 566889999999998888888877776665 45654 88999999998866 44444433 3333222
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+.-.+...+|+.+++|+.+|.+.+.++.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 2222334578889999999999999888
|
|
| >KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-08 Score=98.78 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCc----------------------------------------c-ceeE
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSA----------------------------------------I-TKTC 58 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~----------------------------------------~-t~~~ 58 (371)
.+|++.|++++||||++|+++-....+++..+.. . .-..
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 5899999999999999999998877666533210 0 0001
Q ss_pred EEEeEEeeCC------cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 040649 59 EMKTTVLKDG------QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF 132 (371)
Q Consensus 59 ~~~~~~~~~~------~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~ 132 (371)
....+.++++ ..+.++|.||++-.+. ....+......+|++|||+++.+-++..++.++....+.
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se--------~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~- 260 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE--------LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE- 260 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCchh--------hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence 1112223222 3688999999885321 222233334467999999999988888888887776654
Q ss_pred CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH----HHhcCCceEeecCc
Q 040649 133 GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI----LQLCDNRWVLFDNK 186 (371)
Q Consensus 133 ~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~----~~~~~~r~~~f~~~ 186 (371)
..++.|+.||||...+.+.-.++.+.+ +.++ .....+++|+++.+
T Consensus 261 ----KpniFIlnnkwDasase~ec~e~V~~Q-----i~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 261 ----KPNIFILNNKWDASASEPECKEDVLKQ-----IHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred ----CCcEEEEechhhhhcccHHHHHHHHHH-----HHhcCcccHhhhcCeeEEEecc
Confidence 237788888999775533333443332 2211 12335778877644
|
|
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-08 Score=90.50 Aligned_cols=109 Identities=18% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC-CccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR-RAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
..+...|+|+|++++|||||+|.|+|. ..|..+.....+|........... .+..+.++||||+++...........
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345578999999999999999999998 345544444555554444433331 35789999999999875543011111
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQ 129 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~ 129 (371)
+...... -++++||.++.. ....+...+..+.
T Consensus 84 ~~~l~~l---lss~~i~n~~~~--~~~~~~~~l~~~~ 115 (224)
T cd01851 84 LFALATL---LSSVLIYNSWET--ILGDDLAALMGLL 115 (224)
T ss_pred HHHHHHH---HhCEEEEeccCc--ccHHHHHHHHHHH
Confidence 2111111 238888888775 3444444444443
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=92.91 Aligned_cols=161 Identities=21% Similarity=0.159 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|.+|+|||+|...+++...... . ..|.... ...... .....+.|+||+|..+. ...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y---~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~-----------~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-Y---DPTIEDSYRKELTVDGEVCMLEILDTAGQEEF-----------SAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-c---CCCccccceEEEEECCEEEEEEEEcCCCcccC-----------hHH
Confidence 36899999999999999988877665332 1 1122111 112222 12346789999994332 222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+....|++++|++++++.+-.+ ..+...+...-+. ..-|+++|.||+|+......+.++ -+.+...
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~ 137 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARS 137 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHh
Confidence 2344566799999999986544333 2333344332221 224999999999977532122222 2233444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++..++ ..||+...++++++..+...+..
T Consensus 138 ~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 138 WGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 444433 35777778999999988876665
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=100.43 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+.+|||||..+... ....+..+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~-~~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFA-FRESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHh-hhHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 688999999754311 1223333444443221 7999999999865566665444443311100122499999999998
Q ss_pred CCCch-hhHHHHhcc------c----------CCchHHHHHHhcC--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 150 LEDNE-KTLEDYLGL------E----------CPKPLKEILQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 150 ~~~~~-~~l~~~l~~------~----------~~~~l~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..... .....++.. . ....+-..+...+ .++++ .|+.++.++++|++.+...+..
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~------iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIP------VSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEE------EECCCCcCHHHHHHHHHHHcCC
Confidence 86621 112222221 0 0000111222223 23333 4566789999999999988865
Q ss_pred cC
Q 040649 211 NG 212 (371)
Q Consensus 211 ~~ 212 (371)
.+
T Consensus 249 ~~ 250 (253)
T PRK13768 249 GE 250 (253)
T ss_pred CC
Confidence 44
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-09 Score=84.37 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE--eEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+++++|+.|+|||.|+..+.....-+. .+.|....+. .+.. .....+.||||.|. +.+...
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDd----ssHTiGveFgSrIinVGgK~vKLQIWDTAGQ-----------ErFRSV 74 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDD----SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ-----------ERFRSV 74 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhccc----ccceeeeeecceeeeecCcEEEEEEeecccH-----------HHHHHH
Confidence 5789999999999999998875554222 1223323332 2222 12237889999993 335666
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++-+.++|.|++++-+-.. ..++.-++.+.+..+ .++++.||.|+-.....+..+. ..+.
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~R~VtflEA---------s~Fa-- 141 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPEREVTFLEA---------SRFA-- 141 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChhhhhhHHHH---------Hhhh--
Confidence 7778899999999999985544332 445555666555544 6778889999665432222211 1121
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
...-..| ...|+.+++++.+.+-...
T Consensus 142 -qEnel~f---lETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 142 -QENELMF---LETSALTGENVEEAFLKCA 167 (214)
T ss_pred -cccceee---eeecccccccHHHHHHHHH
Confidence 1111122 2367888999988665443
|
|
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=105.90 Aligned_cols=175 Identities=17% Similarity=0.207 Sum_probs=111.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC-CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG-SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.....+|+|+|.-|+||||||-+|+....++.... ...++.. .-..+......|+||+.-.+. .
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~~-----------~ 70 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSDD-----------R 70 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccch-----------h
Confidence 44568999999999999999999998887554322 1222222 111224456889999853321 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.++......+|++++|...+++ +......+|-.++..+|.....|+|+|.||+|.......+++..+ -.+
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~--------~pi 142 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT--------LPI 142 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH--------HHH
Confidence 1222233455999999977743 444457788899999988888899999999998755322223211 111
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCC
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYT 217 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~ 217 (371)
+. .+-.+......||++..++.+++-.-...+-..-+..|.
T Consensus 143 m~----~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyd 183 (625)
T KOG1707|consen 143 MI----AFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYD 183 (625)
T ss_pred HH----HhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccc
Confidence 11 111233334578888899999998877666554444444
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=99.92 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=103.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+.+.|.|||-++||||||++.|++....+... -..|.++..+....+.|+.+.+.||-||... .+. .....+...+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP~-~LvaAF~ATL 252 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LPI-QLVAAFQATL 252 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhhh-CcH-HHHHHHHHHH
Confidence 34789999999999999999999777644432 2335555566666778999999999999852 111 1112222222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCC---CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKK---IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~---~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
. -...+|++|.|+|+++|.-...... +..|.. +|-. ....++-|=||+|.... +...
T Consensus 253 e-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~-------~~e~---------- 313 (410)
T KOG0410|consen 253 E-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEED-------EVEE---------- 313 (410)
T ss_pred H-HHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccccc-------cCcc----------
Confidence 1 2335699999999998876666544 444444 4432 12356667777775433 1110
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.-++....|++++.|+++|++.+...+..
T Consensus 314 --------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 314 --------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred --------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 01123447888999999999998876554
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-09 Score=86.06 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.++.|+|.+-+|||||+...+....+. .+.+.+..+.-...+...+| ..+.+|||.|-- .+....
T Consensus 9 frlivigdstvgkssll~~ft~gkfae--lsdptvgvdffarlie~~pg~riklqlwdtagqe-----------rfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAE--LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccc--cCCCccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHHHHH
Confidence 689999999999999999999766532 22222211111111222233 378899999932 244445
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.+.-++++|+|++++-+-+ -..++.......+.+...-..+|.+|+|+......+.+ ....+...|
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~E---------EaEklAa~h 146 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAE---------EAEKLAASH 146 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHH---------HHHHHHHhc
Confidence 56677778999999998654433 24455554444553333345688899997744222222 134566667
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+-.++. +|++++.++++-++.+..
T Consensus 147 gM~FVE------TSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 147 GMAFVE------TSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred CceEEE------ecccCCCcHHHHHHHHHH
Confidence 765554 677788899888877654
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=114.07 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------CccceeEEEEeEEe---eCCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--------------SAITKTCEMKTTVL---KDGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--------------~~~t~~~~~~~~~~---~~~~~i~liDTPG~~ 80 (371)
..++|+++|+.++|||||+.+|+...-....... .+.|.......+.| ..+..+++|||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4578999999999999999999743211000000 12232222222222 135678999999988
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+. ..+. ..+...+|++|+|+|+..+........+..+... + .|.|+++||+|...
T Consensus 99 df-------~~~~----~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DF-------GGDV----TRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRLI 153 (731)
T ss_pred Ch-------HHHH----HHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence 73 2223 3334556999999999877777777777665432 2 27789999999763
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=111.07 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=73.6
Q ss_pred EcCCCCcHHHHHHHHhCCCccccC---C-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH
Q 040649 25 LGRTGNGKSATGNSILGRRAFKAS---A-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 25 vG~~GsGKSTlin~L~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~ 88 (371)
+|+.|+|||||++.|+...-.... . ...+.|.......+.+ .+..+++|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999533211000 0 0124455555555666 7889999999997541
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 89 VSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 89 ~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...... ++..+|++++|+|++.+........+..+... . .|+++|+||+|....
T Consensus 74 -~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~---~--~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY---G--VPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCC
Confidence 122222 33456999999999877776666666555432 2 389999999997754
|
|
| >KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=98.32 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------------------------
Q 040649 4 RVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-------------------------------- 51 (371)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------------------------------- 51 (371)
|.|+..|.....- ++|+|||.-++||||.+.+|+....|+.+.+.
T Consensus 296 s~YD~sYnt~DhL---PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTK 372 (980)
T KOG0447|consen 296 SDYDASYNTQDHL---PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTK 372 (980)
T ss_pred hcccccccccccC---ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccc
Confidence 5567777666665 79999999999999999999988777654321
Q ss_pred --------------------CccceeEEEEeEEe--eCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCCceEE
Q 040649 52 --------------------SAITKTCEMKTTVL--KDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDGIHAV 107 (371)
Q Consensus 52 --------------------~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~~d~v 107 (371)
.+.|.......... ++-...++||.||+..+-. ...+....|......+..+|++|
T Consensus 373 E~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAI 452 (980)
T KOG0447|consen 373 EEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAI 452 (980)
T ss_pred hhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 14555555544444 1224788999999986532 22345566777777788899999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 108 LLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 108 l~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|+|+.-+ .. +.++..+.-|...+. +..+.+|+|+||+|+.+.
T Consensus 453 ILCIQDG-SV-DAERSnVTDLVsq~D-P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 453 ILCIQDG-SV-DAERSIVTDLVSQMD-PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred EEEeccC-Cc-chhhhhHHHHHHhcC-CCCCeeEEEEeecchhhh
Confidence 9999654 23 334444444444333 234689999999997754
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=102.43 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=109.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-------------CCCCccceeEEEEeEEee----CCcEEEEEeCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-------------AGSSAITKTCEMKTTVLK----DGQVVNVIDTPGL 79 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~i~liDTPG~ 79 (371)
....++.++.+-..|||||...|+...-.-+. ..-.++|...+.....+. ....+++|||||.
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34578899999999999999998633211000 011477777776666552 2247999999999
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHH
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLED 159 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~ 159 (371)
.|++.. ..+.+..| .+.|+|+|++.+..... +..+...+.... -+|.|+||+|+...+.+....
T Consensus 87 VDFsYE-------VSRSLAAC----EGalLvVDAsQGveAQT---lAN~YlAle~~L--eIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 87 VDFSYE-------VSRSLAAC----EGALLVVDASQGVEAQT---LANVYLALENNL--EIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred cceEEE-------ehhhHhhC----CCcEEEEECccchHHHH---HHHHHHHHHcCc--EEEEeeecccCCCCCHHHHHH
Confidence 986322 33333333 88999999997665443 334433344443 899999999987653333322
Q ss_pred HhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 160 YLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 160 ~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
. +..++..-. +.....||++|.|++++++.|...++...|
T Consensus 151 e--------Ie~~iGid~------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 151 E--------IEDIIGIDA------SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred H--------HHHHhCCCc------chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 2 344443211 222346899999999999999998887655
|
|
| >KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-09 Score=89.87 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=103.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.....+|+++|--||||||++..+--.+...+ .+|.-+....+.+ .+..+.++|.-|... +..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRP 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------ccc
Confidence 44568999999999999999988765554333 2344455555566 678899999998643 344
Q ss_pred HHhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
....++...+++|||+|.+++ +...- +.|...+... ...|++++.||.|..+. -+..+.-.. -.
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak----~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~------L~ 144 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEAK----EELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNK------LG 144 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHHH----HHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhH------hh
Confidence 456677888999999999843 33322 2233322222 23599999999998766 343332221 11
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+-.. .++.+.+.. ..|.+|.|+.+-++++...+..
T Consensus 145 l~~l-~~~~w~iq~---~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 145 LHSL-RSRNWHIQS---TCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hhcc-CCCCcEEee---ccccccccHHHHHHHHHHHHhc
Confidence 1122 224444443 3455689999999999877654
|
|
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.9e-09 Score=98.44 Aligned_cols=171 Identities=17% Similarity=0.266 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+-.+|+++-+...|||||+..|+...- |.... .-.++|.-.....+.| ++..++|+||||..|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 347899999999999999999985431 21110 0136666666666777 88999999999999875
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL 163 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~ 163 (371)
+. ..+.+.+ +|++|+++|+.++.-+..+..++...+. .. +.|+|+||+|.....+..+-+.
T Consensus 83 GE-------VERvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~---gL--~PIVVvNKiDrp~Arp~~Vvd~--- 143 (603)
T COG1217 83 GE-------VERVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL---GL--KPIVVINKIDRPDARPDEVVDE--- 143 (603)
T ss_pred ch-------hhhhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc---CC--CcEEEEeCCCCCCCCHHHHHHH---
Confidence 53 3344443 3999999999977667776666554442 22 7788999999886644332211
Q ss_pred cCCchHHHHHHh-------cCCceEeecCcch----hhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 164 ECPKPLKEILQL-------CDNRWVLFDNKTK----YEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 164 ~~~~~l~~~~~~-------~~~r~~~f~~~~~----~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+-.++-. +.-++++-+.... +.......+..|++.|.+.++...+
T Consensus 144 -----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 144 -----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred -----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 1222222 2223333222211 1222346688999999988886544
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=91.14 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
..+|+++|.||+|||||+|+|+|......+.. +++|....... .+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence 46889999999999999999999876544333 33444433221 3345889999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-09 Score=85.35 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=92.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
...+.++|-.+||||||+|.++....... -..|.....+.+.- ....+.++|.||-.. +.....
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc-CceEEEEEecCCCcc-----------HHHHHH
Confidence 46789999999999999999874332111 12233333433332 445889999999553 344455
Q ss_pred hhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.+..++++++||+|+.++ ++.. + ..|+.++..+ ...|++++.||.|..+. -+-.+.+.+- .+..+-
T Consensus 84 rycR~v~aivY~VDaad~~k~~~s-r---~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rm---gL~sit- 153 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEAS-R---SELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERM---GLSSIT- 153 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhh-H---HHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHh---Cccccc-
Confidence 567889999999999843 2222 2 2233333222 22499999999998765 2222222110 000010
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.-.++-|. .|++...+++.+++++.+.-
T Consensus 154 --dREvcC~s----iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 154 --DREVCCFS----ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred --cceEEEEE----EEEcCCccHHHHHHHHHHHh
Confidence 11223332 45666688999888876543
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=93.65 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccc-----------cC-CCC-------------------CccceeEEEEeEEe
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFK-----------AS-AGS-------------------SAITKTCEMKTTVL 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~-----------~~-~~~-------------------~~~t~~~~~~~~~~ 65 (371)
....+++.+|...-||||||-.|+-..... +. ... .++|.+..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345799999999999999998887432100 00 000 27777777665555
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
..+.+.|.||||.- ...+.+ .....-+|+.|+++|+..++....+ .-..+..++|-+ ++++.+|
T Consensus 84 -~KRkFIiADTPGHe-------QYTRNM----aTGASTadlAIlLVDAR~Gvl~QTr-RHs~I~sLLGIr---hvvvAVN 147 (431)
T COG2895 84 -EKRKFIIADTPGHE-------QYTRNM----ATGASTADLAILLVDARKGVLEQTR-RHSFIASLLGIR---HVVVAVN 147 (431)
T ss_pred -ccceEEEecCCcHH-------HHhhhh----hcccccccEEEEEEecchhhHHHhH-HHHHHHHHhCCc---EEEEEEe
Confidence 88999999999943 222222 2223456999999999866655443 334666777765 9999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQ 196 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~ 196 (371)
|+|+++-+...++..... ...+....+.....| .+.||..|.+
T Consensus 148 KmDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~~---IPiSAl~GDN 190 (431)
T COG2895 148 KMDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVRF---IPISALLGDN 190 (431)
T ss_pred eecccccCHHHHHHHHHH-----HHHHHHHcCCCcceE---EechhccCCc
Confidence 999997766677766665 555666666443322 2245555544
|
|
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-09 Score=94.53 Aligned_cols=170 Identities=17% Similarity=0.207 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCcccee-------------EEE-------EeEEe-----eCCcE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKT-------------CEM-------KTTVL-----KDGQV 70 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~-------------~~~-------~~~~~-----~~~~~ 70 (371)
.+..+|+++|+...|||||..+|+|.....-. ....+.|.. |.. ..+.. .--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 46689999999999999999999996431100 000000100 000 00000 01146
Q ss_pred EEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 71 VNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 71 i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
+.|+|.||.. -+...++.-.. --|+.|+|+.++.++...+ .+-|- ..+.+|- +++|+|-||+|+
T Consensus 88 VSfVDaPGHe-------~LMATMLsGAA----lMDgAlLvIaANEpcPQPQT~EHl~-AleIigi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-------TLMATMLSGAA----LMDGALLVIAANEPCPQPQTREHLM-ALEIIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-------HHHHHHhcchh----hhcceEEEEecCCCCCCCchHHHHH-HHhhhcc---ceEEEEecccce
Confidence 8999999942 22222322222 2399999999996554433 22222 2334454 499999999998
Q ss_pred CCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 150 LEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+.. +..++.|-. ++.+++ +.+..-.+..+.||..+.+++.|++.|.+.++..
T Consensus 153 V~~-E~AlE~y~q------Ik~Fvk---Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 153 VSR-ERALENYEQ------IKEFVK---GTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred ecH-HHHHHHHHH------HHHHhc---ccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 865 134444433 454543 2222222334579999999999999999988754
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-08 Score=92.91 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------C-------cEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------G-------QVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------~-------~~i~liDTPG~~~~ 82 (371)
.++++||.|++|||||+|+|+.... ....++.+|..+.......++ + -.+.++|.+|+...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6899999999999999999998774 334455556554443332211 1 25789999999876
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
....+.++..++.-++. +|+++.|++..
T Consensus 81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence 55555566666666554 49999999875
|
|
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.9e-09 Score=102.99 Aligned_cols=172 Identities=20% Similarity=0.200 Sum_probs=107.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~ 81 (371)
.+.++++|+..+|||-|+..|-|.++. ....+++|.......++.. .-..+.+|||||.-.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVq--egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQ--EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccc--cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 468999999999999999999998773 2334454433222111110 123688999999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC----chhhH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED----NEKTL 157 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~----~~~~l 157 (371)
+ ...-.....-+|.+|+|+|+-+++.+.....+.+|+.. . .|+||.+||+|.+.+ ....+
T Consensus 553 F-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---k--tpFivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 553 F-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---K--TPFIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred h-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---C--CCeEEeehhhhhhcccccCCCchH
Confidence 2 22222233446999999999999999999999988864 2 399999999998732 11222
Q ss_pred HHHhcc-------cCCchHHHHHHhc---C-CceEeecCc--------chhhHhhHHhHHHHHHHHHHHH
Q 040649 158 EDYLGL-------ECPKPLKEILQLC---D-NRWVLFDNK--------TKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 158 ~~~l~~-------~~~~~l~~~~~~~---~-~r~~~f~~~--------~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+.+.. .....+..++-.+ | +--.+|.|. .++||..|.||.+|+-+|..+.
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 222221 1111233332222 1 112223332 4678889999999999876543
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=92.34 Aligned_cols=62 Identities=34% Similarity=0.396 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCccc-eeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAIT-KTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~t-~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+++|+|++|+|||||+|+|++......+. ..+..| +.... +.+ .....|||||||.+...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l--~~l--~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHREL--FPL--PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEE--EEE--TTSEEEECSHHHHT--G
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeE--Eec--CCCcEEEECCCCCcccc
Confidence 3789999999999999999999986544321 122223 22332 222 23467999999876543
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-08 Score=78.51 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+.+|-.++||||++-.|.-.... . ...|+.+....+.+ .+..++++|.-|-. .|..++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~----~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-c----cccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHHH
Confidence 4589999999999999999887633221 1 12233344555556 67789999998843 377788
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCC--CCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKI--FDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~--~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~ 174 (371)
..++++..++|||+|..++ ... .+.-..|...++.+- ..++++..||-|..... +..+.+++.- .
T Consensus 79 rhYy~gtqglIFV~Dsa~~-dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL------e---- 146 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR-DRI-EEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL------E---- 146 (180)
T ss_pred HhhccCCceEEEEEeccch-hhH-HHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc------c----
Confidence 8899999999999998744 222 223344555555432 23788889999987551 2344444431 1
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...++.+.+.+ .++.++.++.+=+.++.+..
T Consensus 147 ~~r~~~W~vqp---~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 RIRDRNWYVQP---SCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccCCccEeec---cccccchhHHHHHHHHHhhc
Confidence 12344443333 34556777777777765543
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=106.29 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=72.1
Q ss_pred cHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC-----------------cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 31 GKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 31 GKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
+||||+.+|.+..+. ..-.+++|.....+.+.+... ..+.||||||..+.
T Consensus 473 ~KTtLLD~iR~t~v~--~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F----------- 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRVA--KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF----------- 539 (1049)
T ss_pred ccccHHHHHhCCCcc--cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence 399999999999883 334567776655544443111 13899999995431
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
..........+|++++|+|+++++.......+..+... . .|+++|+||+|...
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~---~--iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY---K--TPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc---C--CCEEEEEECCCCcc
Confidence 11122345668999999999977888877777776653 2 39999999999863
|
|
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=89.31 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.....|+|+|++|+|||||++.+.+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999765
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-09 Score=89.44 Aligned_cols=57 Identities=32% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
...+++|+|.+|+|||||+|+|+|......+.. +++|...+... + +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e--CCCEEEEECcCC
Confidence 347999999999999999999999887555333 44554433322 2 346889999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-07 Score=90.76 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=72.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh------CCCccccCCCC-C----------ccceeEEEEeEE--e--------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL------GRRAFKASAGS-S----------AITKTCEMKTTV--L-------------- 65 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~~~~-~----------~~t~~~~~~~~~--~-------------- 65 (371)
...|+++|++|+||||++..|+ |..+.-....+ . ..-....++... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999886 44321110000 0 000000011000 0
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
..+..+.||||||.... ......++..... ...||.+++|+|+..+ .........+.+.+ .+.-+|+|
T Consensus 180 ~~~~DvViIDTaGr~~~---d~~lm~El~~i~~--~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ---EDSLFEEMLQVAE--AIQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCcc---hHHHHHHHHHHhh--hcCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEEE
Confidence 02568899999997653 3445566666543 2367899999998733 22333444444433 37889999
Q ss_pred CCCCCCC
Q 040649 146 GGDDLED 152 (371)
Q Consensus 146 k~D~~~~ 152 (371)
|.|....
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9997643
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.4e-08 Score=95.29 Aligned_cols=142 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh---CCCc-----------cccCC---------------CCCccceeEEEEeEEe
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSIL---GRRA-----------FKASA---------------GSSAITKTCEMKTTVL 65 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~---g~~~-----------~~~~~---------------~~~~~t~~~~~~~~~~ 65 (371)
...+..+++++|+..+|||||+-.|+ |... ...+. ...++|.+.....+..
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34467899999999999999998765 3211 00000 0125665555544543
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC-----CCC--HHHHHHHHHHHHHhCCCCCC
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS-----RFS--QEEEAAVHRLQTLFGKKIFD 138 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~-----~~~--~~~~~~l~~l~~~~~~~~~~ 138 (371)
....++|+|+||+.|+-. -+......+|+.++|+|++. +|. +..++....+ ..+|. .
T Consensus 253 -~~~~~tliDaPGhkdFi~-----------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi---~ 316 (603)
T KOG0458|consen 253 -KSKIVTLIDAPGHKDFIP-----------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGI---S 316 (603)
T ss_pred -CceeEEEecCCCccccch-----------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCc---c
Confidence 677899999999777421 11223345699999999872 222 2224444344 44563 4
Q ss_pred eEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH-HhcC
Q 040649 139 YMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL-QLCD 177 (371)
Q Consensus 139 ~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~-~~~~ 177 (371)
.+||++||+|.++-+...+++.... +..++ +.||
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 9999999999997766667766665 67777 6666
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=84.89 Aligned_cols=58 Identities=29% Similarity=0.447 Sum_probs=40.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+++++|.+|+|||||+|+|+|...+... ...+.|.... .+.. + ..++|+||||+..
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~--~~~~-~-~~~~i~DtpG~~~ 140 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQ--TIFL-T-PTITLCDCPGLVF 140 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceE--EEEe-C-CCEEEEECCCcCC
Confidence 348999999999999999999998765322 2233343322 2333 2 3689999999863
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG2486 consensus Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=88.61 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc-CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKA-SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKE 92 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~e 92 (371)
....+.++++|.+++|||||+|.++......- ..+..+.|...... .-+..++++|.||++..+...+ .-+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCcccccCCccCcchHhH
Confidence 34457999999999999999999987654222 11123333332221 2567899999999654322111 11111
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+...........-.+++.+|++.++...|...+.++.+. . .|+.+|+||||....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~--VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN---N--VPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc---C--CCeEEeeehhhhhhh
Confidence 222222222233456677788878888888888887754 2 399999999997643
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-08 Score=94.47 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+|+..|+||||+|+||||||.+|...-.-... ...+++|. .....+.++++.+|. | ...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~mi 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQMI 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHHHH
Confidence 345567789999999999999999854321111 11233332 122456889999994 2 12234
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
..... +|+||+.+|++.+|..+...+|..+... |- ..++-|+||.|+.... .++.....+....++.++.
T Consensus 129 DvaKI----aDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 129 DVAKI----ADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred hHHHh----hheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence 44333 3999999999988888888888777654 32 3788999999988552 4555444432233444443
|
|
| >KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.2e-08 Score=88.75 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC--C-ccccCC--CCCccceeEEEEeEEeeC--------CcEEEEEeCCCCCCCCcc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR--R-AFKASA--GSSAITKTCEMKTTVLKD--------GQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~--~-~~~~~~--~~~~~t~~~~~~~~~~~~--------~~~i~liDTPG~~~~~~~ 85 (371)
..+++++|+..||||||.++|.-. . .|+... ...+.|.+..+....... .-.+++||.||...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 379999999999999999998632 2 222211 113344433333322211 23579999999643
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc--hhhHHHHhcc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN--EKTLEDYLGL 163 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~--~~~l~~~l~~ 163 (371)
+.+.+.....-+|..++|+|+..+......+.+-. |....+..++|+||+|.+.+. ...++....+
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-----g~~~c~klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-----GELLCKKLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhh-----hhhhccceEEEEeccccccchhhhhHHHHHHHH
Confidence 33333334455799999999985554443333322 222224899999999988652 1233333332
Q ss_pred cCCchHHHHHHhcC----CceEeecCcchhhHhhH----HhHHHHHHHHHHHHhh
Q 040649 164 ECPKPLKEILQLCD----NRWVLFDNKTKYEAKRT----EQVQQLLSLVNAVNVK 210 (371)
Q Consensus 164 ~~~~~l~~~~~~~~----~r~~~f~~~~~~sa~~~----~~i~~Ll~~i~~~~~~ 210 (371)
++.-++..+ .+++. .|+..| +++.+|.+.+...+..
T Consensus 151 -----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 151 -----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred -----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhhcC
Confidence 444444332 23333 455555 8999999998866543
|
|
| >KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.3e-08 Score=95.69 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC---------------CccceeEEEEeEEee----CCcEEEEEeCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS---------------SAITKTCEMKTTVLK----DGQVVNVIDTPG 78 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~---------------~~~t~~~~~~~~~~~----~~~~i~liDTPG 78 (371)
-..+|+++|+-++|||+|+..|.+...+...... .+++......+.... ...-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4578999999999999999999987764321110 122222222222221 234789999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
..++ ..+....+. -+|++++|+|+.++..-....+++..-. +. .|+++|+||+|.+
T Consensus 207 HVnF-------~DE~ta~l~----~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~--~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNF-------SDETTASLR----LSDGVVLVVDVAEGVMLNTERIIKHAIQ---NR--LPIVVVINKVDRL 262 (971)
T ss_pred cccc-------hHHHHHHhh----hcceEEEEEEcccCceeeHHHHHHHHHh---cc--CcEEEEEehhHHH
Confidence 8874 334444444 4499999999997776665555554432 23 3999999999975
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=89.70 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
-.++|....+. ..+|+++|.|++|||||+..|++... ...+...+|.+|......+ +|-.+.++|.||+......
T Consensus 51 kg~GFeV~KsG--daRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 51 KGEGFEVLKSG--DARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred CCCCeeeeccC--CeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCccccccccc
Confidence 34444433322 37999999999999999999997654 3344556677777666677 8999999999999875433
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG 133 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~ 133 (371)
....+++... ....+|+|++|+|++ -+...+..++.-.+..|
T Consensus 126 gkGRGRQvia----vArtaDlilMvLDat--k~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 126 GKGRGRQVIA----VARTADLILMVLDAT--KSEDQREILEKELEAVG 167 (364)
T ss_pred CCCCCceEEE----EeecccEEEEEecCC--cchhHHHHHHHHHHHhc
Confidence 2222333322 234569999999998 23344445544333333
|
|
| >KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.9e-08 Score=84.29 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+++|+++||||+|+-.|.-....+... ........+.+ +...+.+||.||... ....+..+...
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 579999999999999986665333211111 11111222233 444579999999543 44444444442
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~ 152 (371)
. ..+-+++||+|.. -+...-....++|...+- .....|++++.||-|....
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2 3678999999987 455555555555544332 1223599999999998865
|
|
| >KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-08 Score=84.30 Aligned_cols=162 Identities=20% Similarity=0.158 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+++|||..++|||+|+-+.+-. .|+... ..|....+. .....+|. .+.+|||.|-.+- -+.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~-~fp~~y---vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Drl 69 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTN-AFPEEY---VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DRL 69 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccC-cCcccc---cCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------ccc
Confidence 68999999999999999887744 333322 122222222 12221244 5789999996552 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
-..+++..|+||+++++.++.+-. ...++-.++..++. -|+|+|.||.|+..+ ...++..... -......
T Consensus 70 RplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d-~~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 70 RPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD-PSTLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred cccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC-HHHHHHHHhccCCcccHHHHH
Confidence 245889999999999998665544 35566677766643 399999999997744 1222222111 1112233
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+....|. +++ .-||++..++.+.++....
T Consensus 146 ~lA~~iga~~y~------EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 146 ELAKEIGAVKYL------ECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred HHHHHhCcceee------eehhhhhCCcHHHHHHHHH
Confidence 44444442 222 2467777888877776543
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=83.84 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.+|||||.... +.....++...+... .++-+++|++++. ...+...+......++ +.-+|+||.
T Consensus 83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~--~~~~~~~~~~~~~~~~-----~~~lIlTKl 150 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATM--GQEDLEQALAFYEAFG-----IDGLILTKL 150 (196)
T ss_dssp TSSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGG--GGHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred CCCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEeccc--ChHHHHHHHHHhhccc-----CceEEEEee
Confidence 356899999998753 344455566555544 6789999999983 3344444444444443 556779999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 151 Det~~ 155 (196)
T PF00448_consen 151 DETAR 155 (196)
T ss_dssp TSSST
T ss_pred cCCCC
Confidence 98755
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=85.35 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=40.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
...+++++|.+|+|||||+|+|++......+.. .++|...... . .+..++++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence 457899999999999999999999776443222 3344433332 2 2356899999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG4252 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=84.36 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
-.++++++|..|+||||+|.+.+.... ..+.. ..+..+.....+.. .....+.+|||.|-- ++-..
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif-Tkdyk-ktIgvdflerqi~v~~Edvr~mlWdtagqe-----------EfDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDYK-KTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----------EFDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc-ccccc-cccchhhhhHHHHhhHHHHHHHHHHhccch-----------hHHHH
Confidence 357899999999999999999984433 22111 11111111111111 123356689998833 34444
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.|+.+.++|++.+++.+-+ ...+-+.+..-.+ . .|+++|-||+|++++ ..+.. ..+..+...
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~--IPtV~vqNKIDlved--s~~~~-------~evE~lak~ 153 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-R--IPTVFVQNKIDLVED--SQMDK-------GEVEGLAKK 153 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-c--CCeEEeeccchhhHh--hhcch-------HHHHHHHHH
Confidence 556788999999999988654432 2333344444333 2 399999999998866 22221 113334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.+.|++. .|.+..-++...+.++.
T Consensus 154 l~~RlyR------tSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 154 LHKRLYR------TSVKEDFNVMHVFAYLA 177 (246)
T ss_pred hhhhhhh------hhhhhhhhhHHHHHHHH
Confidence 4445543 45555555555555443
|
|
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.5e-08 Score=90.96 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh--CCCccccCCCC------------------CccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL--GRRAFKASAGS------------------SAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~--g~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
...+.+++-+|.+|||||-..|+ |.-.-..+... .+++.+...-.+.+ .++.++++|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 45789999999999999986654 32221111000 14444445555666 88999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
|.-|++-+ ..+. +..+|+.|.|+|+..++.+....+++..+-. .+ |++-++||+|....+
T Consensus 90 GHeDFSED-------TYRt----LtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR---~i--PI~TFiNKlDR~~rd 149 (528)
T COG4108 90 GHEDFSED-------TYRT----LTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR---DI--PIFTFINKLDREGRD 149 (528)
T ss_pred Cccccchh-------HHHH----HHhhheeeEEEecccCccHHHHHHHHHHhhc---CC--ceEEEeeccccccCC
Confidence 99886433 2222 2234999999999878877777666655432 23 999999999987663
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.9e-08 Score=104.72 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCC------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc----chHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA----ESEYV 89 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~----~~~~~ 89 (371)
+=.+|+|++|+||||+++.. |...+-... ...+.|..|.. .-....++|||+|.+-... .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccccHHH
Confidence 45799999999999999876 655432211 11122333332 2344567999999764322 12345
Q ss_pred HHHHHHHHhhh--cCCceEEEEEEeCCCCCC--H--------HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhH
Q 040649 90 SKEIAKCIGMA--KDGIHAVLLVFSVRSRFS--Q--------EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTL 157 (371)
Q Consensus 90 ~~ei~~~~~~~--~~~~d~vl~v~d~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l 157 (371)
+..+...+... ...+++||+++|+..-++ . .-+..+..+...+|-.. |+.+|+||+|.+.. +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence 66677766554 357899999999873222 2 12344566777788776 99999999998843 4
Q ss_pred HHHhc
Q 040649 158 EDYLG 162 (371)
Q Consensus 158 ~~~l~ 162 (371)
.+|..
T Consensus 260 ~~~f~ 264 (1169)
T TIGR03348 260 EEFFA 264 (1169)
T ss_pred HHHHH
Confidence 44544
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=85.34 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc---------cccC-----CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA---------FKAS-----AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~---------~~~~-----~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+.+|+...|||||..+|++.-. +... ....++|.......+.. ..+.+..+|+||.-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 45668999999999999999999875322 1111 11135565544444444 678899999999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
..+.+.-. ....|..|+|+++.++.-+..++-+- |....|-+ ++++++||+|++++ ..+.+.+
T Consensus 88 -------YvKNMItg----AaqmDgAILVVsA~dGpmPqTrEHiL-larqvGvp---~ivvflnK~Dmvdd--~ellelV 150 (394)
T COG0050 88 -------YVKNMITG----AAQMDGAILVVAATDGPMPQTREHIL-LARQVGVP---YIVVFLNKVDMVDD--EELLELV 150 (394)
T ss_pred -------HHHHHhhh----HHhcCccEEEEEcCCCCCCcchhhhh-hhhhcCCc---EEEEEEecccccCc--HHHHHHH
Confidence 22323222 22348999999988655555544433 33334543 78899999999986 5555444
Q ss_pred cccCCchHHHHHHhcCCc--eEeecCcchhhHh--------hHHhHHHHHHHHHHHHhhc
Q 040649 162 GLECPKPLKEILQLCDNR--WVLFDNKTKYEAK--------RTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r--~~~f~~~~~~sa~--------~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. .+.+++...+-. -.++ ...|+. -...|.+|++.++..++..
T Consensus 151 em----EvreLLs~y~f~gd~~Pi---i~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 151 EM----EVRELLSEYGFPGDDTPI---IRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HH----HHHHHHHHcCCCCCCcce---eechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 43 366677655411 1111 111221 2345788888888877753
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=91.27 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE 87 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 87 (371)
...+++|+|.||+|||||+|+|+|......+. .+++|...+. +. .+..+.++||||+..+.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQW--IK--LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEE--EE--eCCcEEEEECCCcCCCCCCcH
Confidence 45789999999999999999999987644433 3455555432 22 245688999999987654433
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-08 Score=88.57 Aligned_cols=57 Identities=28% Similarity=0.313 Sum_probs=38.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc-------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
..+++++|.+|+|||||+|+|++..... .....+++|..... +.. +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--Eec--CCCCEEEeCcCC
Confidence 3689999999999999999999865422 11122344444333 222 225799999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-08 Score=85.12 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
...+++++|.+|+|||||+|.|++...... ....++|...... .. + ..+.+|||||++
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~--~~-~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWI--KI-S-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEE--Ee-c-CCEEEEECCCCC
Confidence 346899999999999999999998775332 2223445444432 22 2 568999999974
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8e-08 Score=77.36 Aligned_cols=162 Identities=18% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
++.....+|+++|-.++|||||++-|.+.+.-.--. |.-+......+.....++|+|.-|--. |
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltp-----T~GFn~k~v~~~g~f~LnvwDiGGqr~-----------I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP-----TNGFNTKKVEYDGTFHLNVWDIGGQRG-----------I 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccc-----cCCcceEEEeecCcEEEEEEecCCccc-----------c
Confidence 444567899999999999999999999887632211 222223334442335789999988433 6
Q ss_pred HHHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
..++..++..+|.+|||+|.++ ++........+.+...- -...|+.+.-||-|.+.. ...++... +.
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdllta--a~~eeia~-------kl 144 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLLTA--AKVEEIAL-------KL 144 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHHhh--cchHHHHH-------hc
Confidence 6777888899999999999762 23222233333333211 112489999999998755 33332221 11
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
-+.....|.+.+.. .|+...+++.+-.++|.
T Consensus 145 nl~~lrdRswhIq~---csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 145 NLAGLRDRSWHIQE---CSALSLEGSTDGSDWVQ 175 (185)
T ss_pred chhhhhhceEEeee---CccccccCccCcchhhh
Confidence 12223345554433 34445566665555554
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.6e-07 Score=84.92 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC------CCCCc-----------cceeEEEEeEE----------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS------AGSSA-----------ITKTCEMKTTV---------------- 64 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~------~~~~~-----------~t~~~~~~~~~---------------- 64 (371)
++..|+|+|++|+||||++..|++....... ..... ......+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988754321110 00000 00000010000
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA----KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~----~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
...+..+.||||||.... ......++.+..... ...+|.+++|+|++.+.. ...........+ .+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~-----~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAV-----GLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhC-----CCC
Confidence 013457899999998754 233334444433321 235788999999984322 222222222222 377
Q ss_pred EEEEeCCCCCCC
Q 040649 141 IVVFTGGDDLED 152 (371)
Q Consensus 141 ilv~tk~D~~~~ 152 (371)
-+|+||.|....
T Consensus 263 giIlTKlD~t~~ 274 (318)
T PRK10416 263 GIILTKLDGTAK 274 (318)
T ss_pred EEEEECCCCCCC
Confidence 899999996533
|
|
| >KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=78.70 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc-CCCCCccc--eeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA-SAGSSAIT--KTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~-~~~~~~~t--~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....|+++|.-++|||||+-.+--...-.. +..+..+| .......+.. .+..+.+||.-|-- . ..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-------~----lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-------S----LR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-------H----HH
Confidence 346799999999999999977532111001 11111222 2222233344 46688999987722 2 22
Q ss_pred HHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHH-HhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQT-LFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~-~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
.....++..+|+++||||+.+ ++... ...++.+.. -.-.. .|+++..||-|..+. ....+.-. .+.
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~leg--~p~L~lankqd~q~~--~~~~El~~-----~~~- 152 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKLEG--APVLVLANKQDLQNA--MEAAELDG-----VFG- 152 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhcC--Cchhhhcchhhhhhh--hhHHHHHH-----Hhh-
Confidence 233334555699999999984 33332 222332221 11112 399999999997755 33322111 011
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.....+.|-.+|. ++|+..++||.+-..++...++.+
T Consensus 153 ~~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 LAELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 1333444555544 478899999999999998888776
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.70 E-value=7e-08 Score=89.63 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
...+++|+|.||+|||||+|+|+|.....++. .+++|...+. +.. +..+.++||||+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQW--IKL--SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEE--EEe--CCCEEEEECCCcccCCC
Confidence 45789999999999999999999987644433 3445554433 222 34679999999976543
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-07 Score=79.15 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
..+.||||||... +......++.++|++|+|+|++++.+-.. ..++..+....+.. .|+++|.||+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECc
Confidence 4788999999543 22233445678999999999985432222 23444444433333 4899999999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
|+........++ ........+..++ ..||+++.|+.++++.+...++..
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~~------e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMFH------ETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEEE------EEECCCCCCHHHHHHHHHHHHHhc
Confidence 975331112211 1223332332222 368889999999999999887653
|
|
| >KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-07 Score=75.22 Aligned_cols=119 Identities=21% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-CCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL-GRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~-g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
...+|+++|.-++|||+++.-|+ |...+... ...|....+. +.....| ..+.+.||.|+.+. ...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~~eL---- 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---QQEL---- 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc---cccchhhheeEeeecCCChhheEEEeecccccCc---hhhh----
Confidence 34589999999999999997654 65553332 1123322222 2222222 37899999998863 1111
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh---CCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF---GKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~---~~~~~~~~ilv~tk~D~~~~ 152 (371)
-..+..-+|++++|.+..+ ......+..|+..+ .++.-.|++++.|+.|..++
T Consensus 78 ---prhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 ---PRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred ---hHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 1233455699999998763 34445555555443 23333599999999998755
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.5e-07 Score=71.99 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+.+++|.-|+|||.|+..++.......- +..+........+.. .....+.||||.|. +.+....
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagq-----------erfravt 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ-----------ERFRAVT 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccH-----------HHHHHHH
Confidence 357789999999999999998866543221 111112222222333 13347889999993 2355556
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++.+.++|.|++.+.+-.. ..++.-.+.+..+. ..++++.||.|+......+.++ .+.+.+..
T Consensus 78 rsyyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee---------ak~faeen 146 (215)
T KOG0097|consen 78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE---------AKEFAEEN 146 (215)
T ss_pred HHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH---------HHHHHhhc
Confidence 677889999999999985444332 33444444433322 2577888999965332223322 23444433
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
+--+. ..|+++++++.+.+-
T Consensus 147 gl~fl------e~saktg~nvedafl 166 (215)
T KOG0097|consen 147 GLMFL------EASAKTGQNVEDAFL 166 (215)
T ss_pred CeEEE------EecccccCcHHHHHH
Confidence 32222 247778888876543
|
|
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-08 Score=92.51 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----Ccc-ceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SAI-TKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~~-t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..++|+|.||+|||||+|+|+|.....++..+ +.. |+....+... .+ ..||||||+.....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccC
Confidence 36899999999999999999998765443222 222 3333333321 22 35999999987543
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-08 Score=94.59 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-----c-cceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-----A-ITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-----~-~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
..++|+|+||+|||||||+|+|......+..++ . +|+..+. +.++.+ ..||||||+...
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l--~~l~~g--~~liDTPG~~~~ 237 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL--FELPNG--GLLADTPGFNQP 237 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE--EECCCC--cEEEeCCCcccc
Confidence 468999999999999999999877554332221 1 2333333 223222 379999998754
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-08 Score=91.62 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHH---HHHHHHHHhCCCCCCeEEEEEeC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEA---AVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~---~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+.|+||||....-. .......+.+.+.. ...-++++++|+. .++..... .+-.+...+.-. .|.|.|+||
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~--lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLE--LPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHT--SEEEEEE--
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCC--CCEEEeeec
Confidence 588999999542100 01122223333322 3456889999987 33332211 122222222112 399999999
Q ss_pred CCCCCC
Q 040649 147 GDDLED 152 (371)
Q Consensus 147 ~D~~~~ 152 (371)
+|....
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999863
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-08 Score=79.33 Aligned_cols=162 Identities=19% Similarity=0.109 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+++++|--|+||+|+.-.+--.+.... ..|.......+.+ .+-++.|+|.-|-.+ +..++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-----kPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-----KPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-----CCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence 457999999999999997654432221111 1122222333444 666889999888554 55556
Q ss_pred hhhcCCceEEEEEEeCC--CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVR--SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++...|++|||+|.. ++++..-..+...|.+--=.. -.++++.||.|.... .+..+.... + -+..
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~--~t~~E~~~~-----L--~l~~ 148 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGA--LTRSEVLKM-----L--GLQK 148 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchhh--hhHHHHHHH-----h--ChHH
Confidence 66778889999999987 345544444444544321011 278889999997755 333333221 1 1223
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+|.+.+ ...||-++.|++..++++.+.++.
T Consensus 149 Lk~r~~~I---v~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 149 LKDRIWQI---VKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HhhheeEE---EeeccccccCCcHHHHHHHHHHhc
Confidence 34454432 346888999999999999887764
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=81.30 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA----KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIV 142 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~----~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (371)
.+..+.||||||.... +.....++....... ...+|.+++|+|++. ..........+.+.+ .+.-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence 4467899999998763 333444444443322 235899999999973 333333333333323 26788
Q ss_pred EEeCCCCCCC
Q 040649 143 VFTGGDDLED 152 (371)
Q Consensus 143 v~tk~D~~~~ 152 (371)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999997644
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=94.05 Aligned_cols=175 Identities=18% Similarity=0.164 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-CCC----------------------ccceeEEEEe------EEeeCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSS----------------------AITKTCEMKT------TVLKDGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-~~~----------------------~~t~~~~~~~------~~~~~~~ 69 (371)
+..|+|||++|+||||++..|++......+. ... ++........ .....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999998754321110 000 1100000000 0001345
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
.++||||||.... +....+++..... ...++-+++|+|++. ...+ ..++..+....+. .+.-+|+||.|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~---~i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGE---DVDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccC---CCCEEEEeccC
Confidence 7899999997653 2234444444332 345778899999873 2222 2233333322111 25678899999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchh-hHhhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKY-EAKRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~-sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
....-+. +-.++...+.++.++.+-..+ .....-.-..|.+.+....... .+|.+
T Consensus 335 Et~~~G~-------------iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~~~~--~~~~~ 390 (767)
T PRK14723 335 EATHLGP-------------ALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFATPRRG--ALFAP 390 (767)
T ss_pred CCCCccH-------------HHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhcccccC--CCCCC
Confidence 7744221 222444456666666554333 1112233344554444433332 45653
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=87.14 Aligned_cols=62 Identities=32% Similarity=0.362 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC----C-CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS----A-GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~----~-~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+.+.+++|+||+|||||+|+|.+......+ . +.+..|++ ....+.+ .....|||||||....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt-~~~l~~l--~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT-HVELFPL--PGGGWIIDTPGFRSLG 230 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc-eEEEEEc--CCCCEEEeCCCCCccC
Confidence 457899999999999999999985543322 1 12333322 2222333 1234699999998653
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.9e-08 Score=87.99 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----C-ccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----S-AITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
..++|+|+||+|||||+|.|+|......+..+ + .+|+....... . ...|+||||+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccC
Confidence 58899999999999999999987654433211 1 23434444332 2 23799999998654
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-07 Score=87.83 Aligned_cols=60 Identities=30% Similarity=0.309 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----Cc-cceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SA-ITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++|+|+||+|||||+|+|+|......+..+ +. +|+.... +.. . ....|+||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~--~~~-~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL--YDL-P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE--EEc-C-CCcEEEECCCcCcc
Confidence 468999999999999999999998765443222 11 2322222 222 2 23489999999853
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.7e-07 Score=86.19 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-----------------------ccceeEEEEe-------EEee
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-----------------------AITKTCEMKT-------TVLK 66 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-----------------------~~t~~~~~~~-------~~~~ 66 (371)
+.+.+|+|+|++|+||||++..|+|......+.... ++........ .. .
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-L 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-h
Confidence 345799999999999999999887642211100000 0000000000 00 1
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.+|||+|.... ......++.... ....++-.++|+|++. ...+ +..+...|.. ....-+|+||
T Consensus 268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l~--~~~~~~~~~LVl~at~--~~~~---~~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQR---DQMLAEQIAMLS--QCGTQVKHLLLLNATS--SGDT---LDEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcc---hHHHHHHHHHHh--ccCCCceEEEEEcCCC--CHHH---HHHHHHHhcC--CCCCEEEEEe
Confidence 3456889999997753 223334444322 1234567889999872 2222 2222233332 2367788999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
.|....-+. +-.++...+.++.++.+-
T Consensus 336 lDEt~~~G~-------------~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 336 VDEAASLGI-------------ALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred eeCCCCccH-------------HHHHHHHhCCCEEEEECC
Confidence 997744221 222444556666666654
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=77.67 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee------CC----cEEEEEeCCCCCCCCcchHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK------DG----QVVNVIDTPGLFDSSAESEYV 89 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~----~~i~liDTPG~~~~~~~~~~~ 89 (371)
++++.+|.+|+||||++-.-+.....+.-.+..++. .......+. .| ..+.+|||.|.-
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGID--FreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE--------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGID--FREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE--------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecc--cccceEEEeccCCCCCCcceEEEEeeeccccHH---------
Confidence 467889999999999987766544322111111111 111111110 11 147799999932
Q ss_pred HHHHHHHHhhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCch
Q 040649 90 SKEIAKCIGMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKP 168 (371)
Q Consensus 90 ~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~ 168 (371)
.+.......+..+-++|+++|.++.-+ -....++..|+...=. -..-++++.||+|+... ..+. ...
T Consensus 79 --RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~--R~Vs-------~~q 146 (219)
T KOG0081|consen 79 --RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQ--RVVS-------EDQ 146 (219)
T ss_pred --HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhh--hhhh-------HHH
Confidence 234444445566789999999984222 1234555555543111 11268899999996633 1111 123
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+..+.+.+++..+..+. ..-.+.++-|++.|...+.
T Consensus 147 a~~La~kyglPYfETSA~tg--~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 147 AAALADKYGLPYFETSACTG--TNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred HHHHHHHhCCCeeeeccccC--cCHHHHHHHHHHHHHHHHH
Confidence 45677777877776433211 1112444555555544433
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-07 Score=86.29 Aligned_cols=59 Identities=32% Similarity=0.351 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----C-ccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----S-AITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
.+++++|++|+|||||+|+|+|...+.++..+ + .+|+.... +.+ . ....++||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCcc
Confidence 68999999999999999999998765543221 1 12333322 222 1 13479999999653
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-08 Score=89.82 Aligned_cols=118 Identities=20% Similarity=0.290 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCccccCCC-------------CCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL---GRRAFKASAG-------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+..+|+++.+-.+||||.-..|+ |.......+. ..++|.......+.| .|..+++|||||..|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence 45689999999999999987765 3221100000 125666666666777 999999999999988
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+... +.+|+... |+++.|+|++.+.......+++...+. + .|.++.+||+|.+..
T Consensus 115 f~le-------verclrvl----dgavav~dasagve~qtltvwrqadk~---~--ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLE-------VERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADKF---K--IPAHCFINKMDKLAA 169 (753)
T ss_pred EEEE-------HHHHHHHh----cCeEEEEeccCCcccceeeeehhcccc---C--Cchhhhhhhhhhhhh
Confidence 6543 45565544 999999999877766665555544332 2 399999999998754
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.8e-07 Score=83.64 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=44.5
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... ......++...... ..+|.+++|+|+..+ .........+...+ ...-+|+||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~-----~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAV-----GIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcC-----CCCEEEEeee
Confidence 456899999998753 23344555444332 257899999998732 22222223333222 2677899999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 97644
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.8e-07 Score=86.38 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcc--------ccCCCC-------------CccceeEEEEeEE-------ee--CC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAF--------KASAGS-------------SAITKTCEMKTTV-------LK--DG 68 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~--------~~~~~~-------------~~~t~~~~~~~~~-------~~--~~ 68 (371)
...|+|+|++|+||||++..|++.... ...... .++.......... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 468999999999999999998742210 000000 0100000000000 00 13
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.||||||.... +.....++...+.. ..+|.+++|+|++.. .......+..+.. ...--+|+||.|
T Consensus 321 ~DvVLIDTaGRs~k---d~~lm~EL~~~lk~--~~PdevlLVLsATtk-~~d~~~i~~~F~~------~~idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNYR---ASETVEEMIETMGQ--VEPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccCc---CHHHHHHHHHHHhh--cCCCeEEEEECCccC-hHHHHHHHHHhcC------CCCCEEEEEccc
Confidence 47899999997653 23344555555543 346788999988622 1122333333332 236778899999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
....-+. +-.+...++.++.++.+-
T Consensus 389 ET~k~G~-------------iLni~~~~~lPIsyit~G 413 (436)
T PRK11889 389 ETASSGE-------------LLKIPAVSSAPIVLMTDG 413 (436)
T ss_pred CCCCccH-------------HHHHHHHHCcCEEEEeCC
Confidence 7744221 223445556666666553
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=89.40 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc----cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFK----ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..++|+|.+|+|||||+|+|++..... .....+++|..... +.. +..+.++||||+.....-...+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPL--DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEe--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 589999999999999999999864311 11223444443332 222 3346799999998642111111111111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.+. ....+..+.|+++....+.-.....+..+.. .. ..+.+.+++.+.+
T Consensus 231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~--~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EK--TSFTFYVSNELNI 279 (360)
T ss_pred hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cc--eEEEEEccCCcee
Confidence 111 1235677888887764333333333333321 11 2556666666654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=83.97 Aligned_cols=128 Identities=21% Similarity=0.237 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-CCCccceeE------------------EEEeEE----------eeCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSAITKTC------------------EMKTTV----------LKDGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-~~~~~t~~~------------------~~~~~~----------~~~~~ 69 (371)
+..++|+|++|+||||++..|++......+. ...-+|.+. ...... ...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4689999999999999999987643211110 000001000 000000 01345
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCC---CCeEEEEEeC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKI---FDYMIVVFTG 146 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ilv~tk 146 (371)
.+.+|||||.... +....+++.. +. ....+.-.++|++++...... ...+..+....+.+. ..+.-+|+||
T Consensus 217 DlVLIDTaG~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 217 HMVLIDTIGMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CEEEEcCCCCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEEec
Confidence 7899999998753 2223333332 22 223455678899988433222 233444444332111 1245688999
Q ss_pred CCCCCC
Q 040649 147 GDDLED 152 (371)
Q Consensus 147 ~D~~~~ 152 (371)
.|....
T Consensus 291 lDEt~~ 296 (374)
T PRK14722 291 LDEASN 296 (374)
T ss_pred cccCCC
Confidence 997744
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-07 Score=87.99 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=45.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
...+++|||-|++|||||||+|+|.....++. .+++|...+... -+..+.++||||+......
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIK----LDDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEE----cCCCeEEecCCCcCCCCcc
Confidence 34789999999999999999999998844433 345555444332 2344889999999876443
|
|
| >KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-07 Score=91.61 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
.++....++.++.+...|||||..+|+...-.-+. ....++|......+... .+..+++||+||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCc
Confidence 34455689999999999999999998754421111 11124444333333333 6778999999999
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.|++ .++......+ |..++.+|+..+........++..-. +.. ..++|+||+|.+
T Consensus 83 vdf~-------sevssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~---~~~--~~~lvinkidrl 137 (887)
T KOG0467|consen 83 VDFS-------SEVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWI---EGL--KPILVINKIDRL 137 (887)
T ss_pred cchh-------hhhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHH---ccC--ceEEEEehhhhH
Confidence 8853 2344444444 99999999998888887777763321 122 789999999954
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-07 Score=84.46 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC-CCccceeE----------------------EEEeE------EeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG-SSAITKTC----------------------EMKTT------VLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~----------------------~~~~~------~~~~~ 68 (371)
++..|+||||||+||||++--|........+.. .+-+|+++ ....- .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 367999999999999999988875544111111 11111110 00000 00134
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
+.+.+|||.|.... +.....++..++... ...-+.+|++++.. .. -+..+...|+.- ..--++|||.|
T Consensus 282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~----dlkei~~~f~~~--~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK-YE----DLKEIIKQFSLF--PIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc-hH----HHHHHHHHhccC--CcceeEEEccc
Confidence 57899999997653 334455566665544 34457778888722 12 223333334322 25567899999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchh
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKY 189 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~ 189 (371)
.... +-+ +-.++...+-++.++.+-..+
T Consensus 350 ET~s----~G~---------~~s~~~e~~~PV~YvT~GQ~V 377 (407)
T COG1419 350 ETTS----LGN---------LFSLMYETRLPVSYVTNGQRV 377 (407)
T ss_pred ccCc----hhH---------HHHHHHHhCCCeEEEeCCCCC
Confidence 8744 222 223455556677777665433
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-07 Score=86.20 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~~~ 83 (371)
..++|||.|++|||||+|+|++...-.. ..++.+|..+......+++. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 5799999999999999999998875122 22244444444433333232 257899999998653
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
......+..+...+.. +|++++|++..
T Consensus 82 s~g~Glgn~fL~~ir~----~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIRE----VDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHh----CCEEEEEEeCC
Confidence 3223344445555544 49999999874
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-07 Score=73.57 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=92.7
Q ss_pred EEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 23 ~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
+++|.+++|||.|+-..-... |-.+.--..+..+.....+.. .....+.+|||.|.. .+......++
T Consensus 1 mllgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe-----------rfrsvt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE-----------RFRSVTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchH-----------HHhhhhHhhh
Confidence 378999999998763322111 111110011111111111222 123378899999932 2455566678
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 102 DGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
..+|+++++.|+.++-+-.. ..++..+++.-...+ .++++.||+|...+. .+. ...-..+.+..+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~er------~v~---~ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHER------AVK---RDDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchhh------ccc---cchHHHHHHHHCCCc
Confidence 89999999999986554333 567777777654444 788999999975431 111 111234555555555
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.. .|++++-+++-.+-.|..-+.
T Consensus 138 me------tsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 138 ME------TSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ee------ccccccccHhHHHHHHHHHHH
Confidence 53 688888888877777665444
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-06 Score=83.42 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=66.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC----CC------------------CccceeEEEEeEE-----eeCCcEE
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA----GS------------------SAITKTCEMKTTV-----LKDGQVV 71 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~----~~------------------~~~t~~~~~~~~~-----~~~~~~i 71 (371)
...++|+|++||||||++..|+.......+. .. .++.......... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4578999999999999998886422110000 00 0110000000000 0135578
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhc-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAK-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.||||||+...+ .....++...+.... ..++-+++|+|++.. ..+ +..+...|.. ..+.-+|+||.|..
T Consensus 303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~---~~~~~~~f~~--~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH---TLTVLKAYES--LNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH---HHHHHHHhcC--CCCCEEEEEcccCC
Confidence 999999987532 233444555444322 235678899998832 222 1222222321 23677899999976
Q ss_pred CC
Q 040649 151 ED 152 (371)
Q Consensus 151 ~~ 152 (371)
..
T Consensus 373 ~~ 374 (432)
T PRK12724 373 DF 374 (432)
T ss_pred CC
Confidence 44
|
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=78.78 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHH-HHHHHhCCCCCCeEEEEEeC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVH-RLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ilv~tk 146 (371)
|..+.||.|-|.+.+... +. . -+|.+++|.-.. .. .+.+.++ -+.++ -=++|+||
T Consensus 143 G~DvIIVETVGvGQsev~-------I~---~----~aDt~~~v~~pg--~G-D~~Q~iK~GimEi-------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD-------IA---N----MADTFLVVMIPG--AG-DDLQGIKAGIMEI-------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchhH-------Hh---h----hcceEEEEecCC--CC-cHHHHHHhhhhhh-------hheeeEec
Confidence 456889999998864211 22 2 238888877443 22 2222222 22232 44789999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.|..+. .....++... +...-.... ..--..+....+|.+++|+++|++.|.+...
T Consensus 199 aD~~~A-~~a~r~l~~a-----l~~~~~~~~-~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 199 ADRKGA-EKAARELRSA-----LDLLREVWR-ENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred cChhhH-HHHHHHHHHH-----HHhhccccc-ccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 994433 1222222221 221110000 0001122234678889999999999987654
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.8e-06 Score=83.20 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc----------cCCCCCc---------cceeEEEEeEE----------eeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK----------ASAGSSA---------ITKTCEMKTTV----------LKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~----------~~~~~~~---------~t~~~~~~~~~----------~~~~ 68 (371)
.+..|+|+|++|+||||++..|.+.-... ......+ ......+.... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 45789999999999999998887531100 0000000 00000001000 0024
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.||||||.... +.....++.. +.... ....++|++.+...... ...++.+... .+.-+|+||+|
T Consensus 429 ~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~--~~a~lLVLpAtss~~Dl-~eii~~f~~~------~~~gvILTKlD 495 (559)
T PRK12727 429 YKLVLIDTAGMGQR---DRALAAQLNW-LRAAR--QVTSLLVLPANAHFSDL-DEVVRRFAHA------KPQGVVLTKLD 495 (559)
T ss_pred CCEEEecCCCcchh---hHHHHHHHHH-HHHhh--cCCcEEEEECCCChhHH-HHHHHHHHhh------CCeEEEEecCc
Confidence 57899999998643 2222222322 22111 23567788877332222 2233333321 37789999999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhh-HhhHHhHHHHHHHHHHHHhhcCCCCCChH
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE-AKRTEQVQQLLSLVNAVNVKNGGQPYTNE 219 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~s-a~~~~~i~~Ll~~i~~~~~~~~~~~y~~~ 219 (371)
.... +-. +-.++...+-++.++.+-..++ ....-....|...+..+-.. .+.+++.+
T Consensus 496 Et~~----lG~---------aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~-~~~~~~~~ 553 (559)
T PRK12727 496 ETGR----FGS---------ALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRA-ADKPCTPE 553 (559)
T ss_pred Cccc----hhH---------HHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhh-ccCCCChh
Confidence 7533 211 2223444456666666543331 12223445566666655444 34466543
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.6e-07 Score=75.65 Aligned_cols=57 Identities=30% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
...+++++|.+|+||||++|.+.+........ ..+.|...+. +. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~--~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQL--VK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEE--EE--cCCCEEEEECcCC
Confidence 34688999999999999999999866533322 2233333222 11 2346899999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=77.73 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|+|++|+|||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998754
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=80.26 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-+|+|||++|+|||||++.|+|...+.++
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G 58 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSG 58 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcCCCC
Confidence 4569999999999999999999999876553
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-07 Score=87.41 Aligned_cols=61 Identities=31% Similarity=0.388 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+|++||-|++||||+||+|.|.... +..+++|.|..++. +.+ ...+.++|+||+.-++.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQT--i~l--s~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQT--IFL--SPSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEE--EEc--CCCceecCCCCccccCC
Confidence 589999999999999999999999873 33445666654443 332 34678999999876544
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-07 Score=82.57 Aligned_cols=107 Identities=21% Similarity=0.178 Sum_probs=54.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC--CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR--SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
|..+.||.|.|.+.. + .... .-+|.+++|+... +.+...-. -+.++ .=++|+|
T Consensus 121 G~D~IiiETVGvGQs----E------~~I~----~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEi-------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS----E------VDIA----DMADTVVLVLVPGLGDEIQAIKA----GIMEI-------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTH----H------HHHH----TTSSEEEEEEESSTCCCCCTB-T----THHHH--------SEEEEE
T ss_pred CCCEEEEeCCCCCcc----H------HHHH----HhcCeEEEEecCCCccHHHHHhh----hhhhh-------ccEEEEe
Confidence 457889999998752 1 1112 2348999988665 22221111 12222 5588999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceE-eecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV-LFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~-~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
|.|.... +..... ++..+.....+.- -..+....||.++.|+++|++.|.+...
T Consensus 176 KaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9994322 111111 3334433221100 0011223577788999999999886544
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >KOG3886 consensus GTP-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.7e-07 Score=77.22 Aligned_cols=124 Identities=20% Similarity=0.236 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-ccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH-HH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK-CI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~-~~ 97 (371)
.+|+++|.+||||||+=-.+.... .++ ....+.|.+.......+.++-.+.++|.-| ++...+.+.. .-
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D--~~rlg~tidveHsh~RflGnl~LnlwDcGg-------qe~fmen~~~~q~ 75 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARD--TRRLGATIDVEHSHVRFLGNLVLNLWDCGG-------QEEFMENYLSSQE 75 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhh--hhccCCcceeeehhhhhhhhheeehhccCC-------cHHHHHHHHhhcc
Confidence 689999999999999765555322 111 223445555555445453456888999888 3333443333 22
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
......++++++|+|+..+--..|... -.-|..++.....-.+.+.++|+|++..
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 234567899999999984322223222 2222222222222378899999998855
|
|
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=81.25 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~ 81 (371)
..+.+++||.+++|||||+|+|+..... ....+.+|.++....+..++. -.++|+|..|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4589999999999999999999987763 344556666655544433211 2689999999987
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.......++..++..++. +|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR~----vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRH----VDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhh----ccceeEEEEec
Confidence 655555566666666554 48998888764
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-06 Score=81.18 Aligned_cols=144 Identities=21% Similarity=0.204 Sum_probs=74.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeE------------------EEEeEE----------eeCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTC------------------EMKTTV----------LKDGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~------------------~~~~~~----------~~~~~ 69 (371)
+..++|+|++|+||||++..|++... ...+....-++.+. ...... ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 45899999999999999887764322 11100000000000 000000 01245
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+.||||||.... +.....++...+.. ...++-+++|++++. ...+ +..+...|..- .+.-+|+||+|.
T Consensus 301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~-~~~~~~~~LVl~a~~--~~~~---l~~~~~~f~~~--~~~~vI~TKlDe 369 (424)
T PRK05703 301 DVILIDTAGRSQR---DKRLIEELKALIEF-SGEPIDVYLVLSATT--KYED---LKDIYKHFSRL--PLDGLIFTKLDE 369 (424)
T ss_pred CEEEEeCCCCCCC---CHHHHHHHHHHHhc-cCCCCeEEEEEECCC--CHHH---HHHHHHHhCCC--CCCEEEEecccc
Confidence 7899999998653 22233444444442 223457778888872 2222 22222233321 244688999997
Q ss_pred CCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 150 LEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
...-+ .+-.++...+.++.++.+-
T Consensus 370 t~~~G-------------~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 370 TSSLG-------------SILSLLIESGLPISYLTNG 393 (424)
T ss_pred ccccc-------------HHHHHHHHHCCCEEEEeCC
Confidence 53311 1333555566677766654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=75.52 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||+++|+|...+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999866443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-06 Score=79.65 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC------cc--ccCCCC-C------------ccceeEEEEeEE-------e--eC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR------AF--KASAGS-S------------AITKTCEMKTTV-------L--KD 67 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~------~~--~~~~~~-~------------~~t~~~~~~~~~-------~--~~ 67 (371)
++..|+|+|++|+||||++..|+... +. ...... + ++.......+.. . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999998886321 10 000000 0 110000000000 0 02
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...... ..+|.+++|++++ ....+ ....+.. |.. ..+.-+|+||.
T Consensus 285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNYL---AEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCcc---CHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 458899999998653 33344455544432 2567778888764 33322 3333332 322 23677889999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
|....-+. +-.+....+.++.++.+-
T Consensus 353 DET~~~G~-------------~Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 353 DETTRIGD-------------LYTVMQETNLPVLYMTDG 378 (407)
T ss_pred cCCCCccH-------------HHHHHHHHCCCEEEEecC
Confidence 97644221 222444556666666543
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=76.95 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998875
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.7e-07 Score=81.46 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..-++|+||+|++......++.++.. ++.+.+ ..++++ .|++++.|+++|+++|..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~-----lr~lnp--~a~I~~------vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIAC-----AREVNP--EIEIIL------ISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHH-----HHhhCC--CCcEEE------EECCCCCCHHHHHHHHHH
Confidence 37799999999875322344444432 333321 233443 577788999999999865
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.3e-07 Score=85.28 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc----cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA----FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
...++|||.+|+|||||||+|++... .......+++|..... +.+ +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPL--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEc--CCCcEEEECCCccc
Confidence 35799999999999999999986431 1111223444544332 223 22357999999974
|
|
| >KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=83.69 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC---CCccccC-------------CCCCccceeEEEEeEEeeCCcEEEEEeCCC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILG---RRAFKAS-------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPG 78 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG 78 (371)
+.+...+|++.-+-.+||||+-+.++- ...--.. ....++|.......+.| ....+++|||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPG 113 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPG 113 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCC
Confidence 334568999999999999999888752 2110000 00135565555556666 788999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..|+... ..+ ++.-.|+.++|+++..+.........+.++.. . .|-|..+||+|.++.
T Consensus 114 HvDFT~E-------VeR----ALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry---~--vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 114 HVDFTFE-------VER----ALRVLDGAVLVLDAVAGVESQTETVWRQMKRY---N--VPRICFINKMDRMGA 171 (721)
T ss_pred ceeEEEE-------ehh----hhhhccCeEEEEEcccceehhhHHHHHHHHhc---C--CCeEEEEehhhhcCC
Confidence 9986432 222 33345889999988877777777777777765 2 289999999999977
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.9e-06 Score=89.40 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc----chHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA----ESEYVSK 91 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~----~~~~~~~ 91 (371)
=.+|||++|+||||++... |...+-... .....|..|. +.-+...++|||.|-+-... .+...+.
T Consensus 127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-----cccccceEEEcCCcceecccCcchhhHHHHH
Confidence 3688999999999987542 333322211 0111143333 32455678999999764432 1222334
Q ss_pred HHHHHHhh--hcCCceEEEEEEeCCCCCC--HHHH--------HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHH
Q 040649 92 EIAKCIGM--AKDGIHAVLLVFSVRSRFS--QEEE--------AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLED 159 (371)
Q Consensus 92 ei~~~~~~--~~~~~d~vl~v~d~~~~~~--~~~~--------~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~ 159 (371)
.+...+.. ....+++||+.+|+.+-.+ ..+. ..+..|...++... |+.|++||.|.+.. +++
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll~G----F~e 274 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLLPG----FEE 274 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccccc----HHH
Confidence 44444443 3457899999999863222 2222 22455666666555 99999999999843 666
Q ss_pred Hhcc
Q 040649 160 YLGL 163 (371)
Q Consensus 160 ~l~~ 163 (371)
|...
T Consensus 275 fF~~ 278 (1188)
T COG3523 275 FFGS 278 (1188)
T ss_pred HHhc
Confidence 6654
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.9e-06 Score=80.13 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..++|||++|+||||++..|++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999999998654
|
|
| >KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-06 Score=75.28 Aligned_cols=173 Identities=16% Similarity=0.180 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc------c---cc-----CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA------F---KA-----SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~------~---~~-----~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+.|..+|+-+|+...|||||--+|+.... + .. .....++|.......+.. ..+.+.=+|+||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHH
Confidence 44678999999999999999988863211 1 00 011235555444333443 566778899999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+.+-+......-|+.|+|+.++++.-+..++-+-+.++ .|- +++++.+||.|.+++ ...-+.+
T Consensus 130 -----------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~d--~e~leLV 192 (449)
T KOG0460|consen 130 -----------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVDD--PEMLELV 192 (449)
T ss_pred -----------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccCC--HHHHHHH
Confidence 22222222234599999999987666666665544444 454 489999999999966 4444444
Q ss_pred cccCCchHHHHHHhcC---Cc-eEeecCc-----chhhHhhHHhHHHHHHHHHHHHhh
Q 040649 162 GLECPKPLKEILQLCD---NR-WVLFDNK-----TKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~---~r-~~~f~~~-----~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.- .+++++...+ .. ++.+..- ...+.-....|..|++.++..++.
T Consensus 193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 32 3566666554 11 1111100 001111235588888888886664
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.6e-05 Score=80.15 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|++|+|||||++.|.|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 58999999999999999999876
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=67.08 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=69.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+++++|--++|||||++.|-......-.+..++++. .... .+-.++.+|.-|... . ....
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE-----~l~I-g~m~ftt~DLGGH~q-------A----rr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE-----ELSI-GGMTFTTFDLGGHLQ-------A----RRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH-----Hhee-cCceEEEEccccHHH-------H----HHHH
Confidence 345899999999999999999864433111111122211 1223 667889999988432 2 2333
Q ss_pred hhhcCCceEEEEEEeCC--CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVR--SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+++.+|+++|.+|+- +++.+.- .-++.+...- .-.+.|+++..||+|....
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~-~eld~ll~~e-~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESK-KELDALLSDE-SLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHH-HHHHHHHhHH-HHhcCcceeecccccCCCc
Confidence 44556679999999986 3343322 2222222110 0123499999999998766
|
|
| >KOG1673 consensus Ras GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.1e-05 Score=66.28 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=96.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSK 91 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ 91 (371)
+.++.-..+|+++|.+..|||||+-.-.|...-.......++. +....+.. .-.-.+.|+|.-|- +
T Consensus 14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN--~mdkt~~i~~t~IsfSIwdlgG~-----------~ 80 (205)
T KOG1673|consen 14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVN--FMDKTVSIRGTDISFSIWDLGGQ-----------R 80 (205)
T ss_pred ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCcc--ceeeEEEecceEEEEEEEecCCc-----------H
Confidence 3344456899999999999999987777665421111111221 11111111 12235789998883 2
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
++...+..+..++-+++|++|.+.+.+-.. +..+.+...|....---|+|.||-|.+-.-+..+..-+.. ....
T Consensus 81 ~~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~----qar~ 154 (205)
T KOG1673|consen 81 EFINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR----QARK 154 (205)
T ss_pred hhhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH----HHHH
Confidence 456666777778889999999995544332 3344444444332224567899999763322233322221 2445
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+....+...+.- |+...-+++.++..+..-+
T Consensus 155 YAk~mnAsL~F~------Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 155 YAKVMNASLFFC------STSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHHhCCcEEEe------eccccccHHHHHHHHHHHH
Confidence 555555555442 3334467888888765433
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-06 Score=73.84 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~ 56 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999876544
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.3e-06 Score=80.40 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=44.5
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.||||||.... +.....++..... ...+|.+++|+|++.+ . ..+..+.. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~--~~~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKE--AVKPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHH--HhcccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 47899999997753 3444555555433 2357899999998743 2 23334433 3322 125678899999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 244 ~~a~ 247 (437)
T PRK00771 244 GTAK 247 (437)
T ss_pred CCCc
Confidence 7643
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.2e-06 Score=74.77 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+-.|.++|+||||||||+|.|.|...+.++
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 468999999999999999999999887664
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=77.68 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc-------cC---CCC---------------CccceeEEEEeE------EeeC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-------AS---AGS---------------SAITKTCEMKTT------VLKD 67 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~-------~~---~~~---------------~~~t~~~~~~~~------~~~~ 67 (371)
+..|+++|++|+||||++..|+...... .. ..+ .++......... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4689999999999999998876321100 00 000 011110000000 0013
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...+.... ..+-+++|+|++.. ..+. .+.+... .. ..+.-+|+||.
T Consensus 254 ~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~~--~~~~~~~-~~--~~~~~~I~TKl 322 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSDV--KEIFHQF-SP--FSYKTVIFTKL 322 (388)
T ss_pred CCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHHH--HHHHHHh-cC--CCCCEEEEEec
Confidence 567999999998753 2222344555544332 23468899999843 2222 2333333 21 12677899999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 323 Det~~ 327 (388)
T PRK12723 323 DETTC 327 (388)
T ss_pred cCCCc
Confidence 97644
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.6e-06 Score=70.78 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++++|..|+|||||++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998865
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-06 Score=78.05 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc----cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA----FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES 86 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 86 (371)
+....+.|+|-||+|||||||++..... .......+++|...... +.+.+...++++||||+..++..+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCC
Confidence 4568999999999999999999753321 11112234566554432 223367789999999998775544
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.2e-06 Score=74.75 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc---ccC-CCC--C-----------ccceeEEEEeEE-----------e--eC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF---KAS-AGS--S-----------AITKTCEMKTTV-----------L--KD 67 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~---~~~-~~~--~-----------~~t~~~~~~~~~-----------~--~~ 67 (371)
+..+++|+|++|+||||++..|++.... ..+ ... . .....+...... . ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4479999999999999999988754210 000 000 0 000000000000 0 02
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...+... .++.+++|+|++. ...+ ....++. |.. ..+--+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~--~~~d--~~~~~~~-f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASM--KSKD--MIEIITN-FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCcc--CHHH--HHHHHHH-hCC--CCCCEEEEEee
Confidence 457899999997643 233455555554432 5678999999872 2222 2223332 322 23677899999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
|....-+. +-.+....+.++.++.+-
T Consensus 222 Det~~~G~-------------~l~~~~~~~~Pi~~it~G 247 (270)
T PRK06731 222 DETASSGE-------------LLKIPAVSSAPIVLMTDG 247 (270)
T ss_pred cCCCCccH-------------HHHHHHHHCcCEEEEeCC
Confidence 97744221 222444456666666543
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.5e-05 Score=78.11 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=42.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...... -.++.+++|+|+.. ..........+...+ ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~--v~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAA--VNPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHh--hCCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 357899999997643 33344444444332 25778899999752 222233333333222 2567888999
Q ss_pred CCC
Q 040649 148 DDL 150 (371)
Q Consensus 148 D~~ 150 (371)
|..
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 965
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.3e-05 Score=71.91 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=48.1
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCCCC--
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLFGKKI-- 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~~~~~-- 136 (371)
++..+.++|..|-.. ..+.+..++.++++|+||+|.++- ....-...+..+..++..+.
T Consensus 182 ~~~~~~~~DvgGqr~-----------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 182 KKLFFRMFDVGGQRS-----------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred CCeEEEEEecCCchh-----------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 455678888888432 222334456788999999998731 12233455566666665442
Q ss_pred CCeEEEEEeCCCCCC
Q 040649 137 FDYMIVVFTGGDDLE 151 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~ 151 (371)
..|++|++||.|.+.
T Consensus 251 ~~piil~~NK~D~~~ 265 (342)
T smart00275 251 NTSIILFLNKIDLFE 265 (342)
T ss_pred CCcEEEEEecHHhHH
Confidence 259999999999763
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.1e-05 Score=70.91 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCCCC--
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLFGKKI-- 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~~~~~-- 136 (371)
++..+.++|++|-.. ....+..++.++++|+||+|.++. ....-...+..+..++..+.
T Consensus 159 ~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 159 KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 566788999999432 222333456788999999998731 12333445556666555432
Q ss_pred CCeEEEEEeCCCCCC
Q 040649 137 FDYMIVVFTGGDDLE 151 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~ 151 (371)
..|+++++||.|.+.
T Consensus 228 ~~pill~~NK~D~f~ 242 (317)
T cd00066 228 NTSIILFLNKKDLFE 242 (317)
T ss_pred CCCEEEEccChHHHH
Confidence 259999999999663
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=67.56 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE---eEEeeCCcEEEEEeCCCCCCCCcchHHH-----
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK---TTVLKDGQVVNVIDTPGLFDSSAESEYV----- 89 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~i~liDTPG~~~~~~~~~~~----- 89 (371)
++..++|+|++|+|||||++.|+|...+.++. ++...... .... .....++...|.++......+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~----i~~~g~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE----IKVLGKDIKKEPEEV-KRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE----EEECCEEcccchHhh-hccEEEEecCCccccCCcHHHHhhcCHH
Confidence 34689999999999999999999987544321 11110000 0011 12344556666665421111111
Q ss_pred HHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 90 SKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 90 ~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
...-..........|+++|+--+.. .+.... ..+++.+...... ..+++++||.
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~---g~tiii~th~ 154 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTS-GLDPESRREFWELLRELKKE---GKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHHHHC---CCEEEEECCC
Confidence 0112222233345677777644433 454444 3334444443222 2577777764
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.9e-05 Score=76.06 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=42.9
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++..... .-.+|.+++|+|+.. ..........+...+ ...-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~--~~~p~e~lLVvda~t--gq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKE--ILNPDEILLVVDAMT--GQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHH--hhCCceEEEEEeccc--hHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 456899999997642 2334444544433 225788999999862 222233333333332 2567889999
Q ss_pred CCC
Q 040649 148 DDL 150 (371)
Q Consensus 148 D~~ 150 (371)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 965
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=69.00 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS 56 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 345899999999999999999999876544
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-05 Score=65.60 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
++..++|+|++|+|||||+++|+|...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 34689999999999999999999987543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=68.91 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.++..++|+|++|+|||||++.|+|...+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 53 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNG 53 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Confidence 3456899999999999999999999876544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=72.60 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+||+|+|||||+++|+|...+.++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 358899999999999999999997665543
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=67.49 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 54 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDS 54 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 446899999999999999999999876544
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=75.80 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEe---EEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKT---TVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++|+|++|||||||+++|+|...+.++ .+........ ..+ ..+..++.+.|.+++.
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G----~i~i~G~~~~~~~~~~-~~~igy~~~~~~~~~~ 92 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVVKEPAKV-RRRIGYVPQEPSLYPE 92 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEEcCEeCccCHHHH-HhheEEEccCCCCCcc
Confidence 468999999999999999999998876442 2221111100 011 2346778888887653
|
|
| >KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=67.72 Aligned_cols=118 Identities=20% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--eCC-cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--KDG-QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.+...++++|..|.||||+++..+-...-.. ...|.....+...+ ..| ..+.++||.|..-..+-
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~----y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl-------- 75 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKT----YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL-------- 75 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceec----ccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--------
Confidence 3568899999999999999998775554222 12222233332222 123 47899999985432111
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
-.-++-...+.++++|+..+++-.. ..+-+.+...+++ + |+++..||.|....
T Consensus 76 ---rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-i--Piv~cGNKvDi~~r 129 (216)
T KOG0096|consen 76 ---RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-I--PIVLCGNKVDIKAR 129 (216)
T ss_pred ---ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-C--Ceeeeccceecccc
Confidence 1112334568888999987776554 3344556666665 3 99999999996543
|
|
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-05 Score=71.15 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-CCCccccCCCC-----------CccceeEEEEeEEeeC-----------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL-GRRAFKASAGS-----------SAITKTCEMKTTVLKD----------------- 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~-g~~~~~~~~~~-----------~~~t~~~~~~~~~~~~----------------- 67 (371)
++...|++.|+...|||||.-+|+ |...-..+... .+.|....+..+.+.+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 345889999999999999997765 43321111000 1222222222222211
Q ss_pred -----CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEE
Q 040649 68 -----GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIV 142 (371)
Q Consensus 68 -----~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (371)
++.+.++||-|.-.. +...+... .-..+|-.++++-++++.+...++-+-.+..+ .. |+|+
T Consensus 195 vv~~aDklVsfVDtvGHEpw------LrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~---~l--PviV 260 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPW------LRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM---EL--PVIV 260 (527)
T ss_pred hhhhcccEEEEEecCCccHH------HHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh---cC--CEEE
Confidence 245789999885431 22222222 23467999999999877776666555444432 22 9999
Q ss_pred EEeCCCCCCCchhhHHHHhc
Q 040649 143 VFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 143 v~tk~D~~~~~~~~l~~~l~ 162 (371)
|+||+|...+ +.+...+.
T Consensus 261 vvTK~D~~~d--dr~~~v~~ 278 (527)
T COG5258 261 VVTKIDMVPD--DRFQGVVE 278 (527)
T ss_pred EEEecccCcH--HHHHHHHH
Confidence 9999999877 44444443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.9e-05 Score=73.21 Aligned_cols=30 Identities=37% Similarity=0.395 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+-.++++||||||||||++.|+|...+.++
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 357999999999999999999999987664
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5e-06 Score=74.07 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.++.++|.|++||||++.-++|..... .+..+.| -..........+..+.+.|.||+.+...+....+++.....
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~v--asyeftt-l~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviava-- 134 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEV--AAYEFTT-LTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVA-- 134 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcc--cccccee-EEEecceEeccccceeeecCcchhcccccCCCCccEEEEEe--
Confidence 489999999999999999999876532 2233333 23333333238889999999999876544333333333332
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK 135 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~ 135 (371)
..++++++|+|+-.|++ .+.+++.-.+-||-.
T Consensus 135 --rtcnli~~vld~~kp~~--hk~~ie~eleg~gir 166 (358)
T KOG1487|consen 135 --RTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIR 166 (358)
T ss_pred --ecccEEEEEeeccCccc--HHHHHHHhhhcceee
Confidence 34589999999986665 345555555555543
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=75.61 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=49.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||.|-... ++....++...-. .-.||-+|||+|+.. ...-....+.+.+.++ -.=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i---de~Lm~El~~Ik~--~~~P~E~llVvDam~--GQdA~~~A~aF~e~l~-----itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI---DEELMDELKEIKE--VINPDETLLVVDAMI--GQDAVNTAKAFNEALG-----ITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc---cHHHHHHHHHHHh--hcCCCeEEEEEeccc--chHHHHHHHHHhhhcC-----CceEEEEcc
Confidence 357999999997653 4556666665543 347899999999872 3333445555555543 566889999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 250 DGdaR 254 (451)
T COG0541 250 DGDAR 254 (451)
T ss_pred cCCCc
Confidence 96543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-06 Score=70.75 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ 56 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 346899999999999999999999876544
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.4e-05 Score=63.54 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGS 55 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 446899999999999999999999876544
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.5e-06 Score=82.78 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|||||||++.|+|...+.++
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999999999999998776553
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.2e-05 Score=67.16 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS 54 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876544
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=62.77 Aligned_cols=73 Identities=22% Similarity=0.204 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.|+||||.... .......+..... ...++.+++|+++... ......+..+....+ ...+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 456889999997642 1222333332222 1247999999998632 222333333333333 467888999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 97754
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=69.04 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 136 IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 136 ~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+..-=++|+||.|+..-.+.+++.+... .+.+- +...+.| .+.++++|++++++++..
T Consensus 141 i~~aDllVInK~DLa~~v~~dlevm~~d-----a~~~n---p~~~ii~-----~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 141 IFKADLLVINKTDLAPYVGADLEVMARD-----AKEVN---PEAPIIF-----TNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred eeEeeEEEEehHHhHHHhCccHHHHHHH-----HHHhC---CCCCEEE-----EeCCCCcCHHHHHHHHHh
Confidence 3345678999999875544455544443 33332 3444443 455678999999988764
|
|
| >KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3e-05 Score=72.49 Aligned_cols=142 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-------------CccceeEEEEeEE---------ee----------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-------------SAITKTCEMKTTV---------LK---------- 66 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------------~~~t~~~~~~~~~---------~~---------- 66 (371)
..+|+++|-..+|||||+-.|+.... +.+... .+-|......... +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 57999999999999999988874432 111110 0111100000000 00
Q ss_pred -CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 67 -DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 67 -~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
...-+++||..|.... .+.... .+.-..||..++|++++.+++....+-+-.+..+ ++ |+++++|
T Consensus 246 ~SSKlvTfiDLAGh~kY-------~~TTi~--gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL---~i--PfFvlvt 311 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKY-------QKTTIH--GLTGYTPHFACLVVSADRGITWTTREHLGLIAAL---NI--PFFVLVT 311 (591)
T ss_pred hhcceEEEeecccchhh-------heeeee--ecccCCCceEEEEEEcCCCCccccHHHHHHHHHh---CC--CeEEEEE
Confidence 1234677777774321 000000 1122358999999999988888877777777665 33 9999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEe
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVL 182 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~ 182 (371)
|+|.... ..++..+.+ +..++...|-+.++
T Consensus 312 K~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~kvp 341 (591)
T KOG1143|consen 312 KMDLVDR--QGLKKTVKD-----LSNLLAKAGCTKVP 341 (591)
T ss_pred eeccccc--hhHHHHHHH-----HHHHHhhcCccccc
Confidence 9998877 666666655 55666655544333
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.8e-05 Score=67.15 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++++||||||||||+++|.+...++++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 4568999999999999999999999887764
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.002 Score=68.12 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..++|.|++++||||++.++.
T Consensus 328 ~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHH
Confidence 568999999999999999875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.8e-05 Score=64.82 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999999987
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=65.23 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 65 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES 65 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876544
|
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=71.50 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC------Cc-------cccCC--------CCCccceeEEEEe-----EEe-----
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGR------RA-------FKASA--------GSSAITKTCEMKT-----TVL----- 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~------~~-------~~~~~--------~~~~~t~~~~~~~-----~~~----- 65 (371)
+.+..|++||-+|+||||.|--|+.. .+ |..+. ...++......+. +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34678999999999999999877532 11 11000 0001111110000 000
Q ss_pred --eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh---c-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe
Q 040649 66 --KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA---K-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 66 --~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~---~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
..+..+.+|||.|-..+ ...++.++.+..... . ..||-+++|+|+..+ ..-..-.+.+.+..+ -
T Consensus 217 Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~-----l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVG-----L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcC-----C
Confidence 13457999999997754 334555555444332 2 247889999999833 223334455555544 4
Q ss_pred EEEEEeCCCCC
Q 040649 140 MIVVFTGGDDL 150 (371)
Q Consensus 140 ~ilv~tk~D~~ 150 (371)
.-+|+||+|..
T Consensus 287 ~GiIlTKlDgt 297 (340)
T COG0552 287 DGIILTKLDGT 297 (340)
T ss_pred ceEEEEecccC
Confidence 56789999944
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.4e-05 Score=76.49 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..+++||+||||||||+|.|+|...+..+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 4578999999999999999999998875543
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.6e-05 Score=66.72 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999999984
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.6e-05 Score=68.46 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 53 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSS 53 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 899999999999999999999866544
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.3e-06 Score=78.08 Aligned_cols=59 Identities=37% Similarity=0.470 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----Cc-cceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SA-ITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+.+++|+|.+|+|||||+|.|+|...+.++... +. .|..... ..+ .+ ...++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l--~~l-~~-~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHREL--HPL-PS-GGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccE--EEe-cC-CCeecCCCchhh
Confidence 468999999999999999999997765443211 11 1211111 222 22 236889999754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.9e-05 Score=81.24 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++++|++|+|||||++.|+|.. +.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 56789999999999999999999987 544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.5e-05 Score=80.38 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..|+|+|++|+|||||++.|+|...+.++
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4578999999999999999999998876553
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=97.87 E-value=4e-05 Score=67.93 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||+++|+|...+.+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 62 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEE 62 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 446899999999999999999999876544
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=62.76 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999964
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-05 Score=71.12 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=93.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc--cC---------------------------------CCCCccceeEEEEe
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--AS---------------------------------AGSSAITKTCEMKT 62 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~--~~---------------------------------~~~~~~t~~~~~~~ 62 (371)
...+|+-+|+...||||++++|.|..... .. .+.......|....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 35789999999999999999998854211 00 00000011111111
Q ss_pred EE--eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC----CCCHHHHHHHHHHHHHhCCCC
Q 040649 63 TV--LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS----RFSQEEEAAVHRLQTLFGKKI 136 (371)
Q Consensus 63 ~~--~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~----~~~~~~~~~l~~l~~~~~~~~ 136 (371)
+. +.--+.+.++|.||.+- +...+..- ..-.|+.++.+-+++ |-+.+....++.++-
T Consensus 117 ~~~~~klvRHVSfVDCPGHDi-------LMaTMLnG----aAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------ 179 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDI-------LMATMLNG----AAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------ 179 (466)
T ss_pred CCCceEEEEEEEeccCCchHH-------HHHHHhcc----hHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------
Confidence 10 00113578999999541 22212211 112377888887663 333444444444432
Q ss_pred CCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 137 FDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
++++++-||+|+..+. ..++++-. ++.++... ...-.+..+.||+-+.+++-+.++|..-++....
T Consensus 180 -khiiilQNKiDli~e~-~A~eq~e~------I~kFi~~t---~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 180 -KHIIILQNKIDLIKES-QALEQHEQ------IQKFIQGT---VAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred -ceEEEEechhhhhhHH-HHHHHHHH------HHHHHhcc---ccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 4999999999988662 22333221 44444321 1111122347888889999999999887775433
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=65.73 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++++||+|||||||+++|+|...+.++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 468899999999999999999997765543
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.02 Score=61.90 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|++|+|||||+.+|+
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356889999999999999964
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=61.81 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
+..++|+|++|+|||||+++|.|...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999998653
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0001 Score=70.54 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.+|++|||+|+|||||+..|+|...+..+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 58999999999999999999998775543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.1e-05 Score=79.80 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+|+++|++|+|||||++.|+|...+.+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~ 395 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTE 395 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 457899999999999999999999887654
|
|
| >KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.1e-05 Score=71.41 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.|+||.|-... ...+.+++..+... -.||.+|||+|++-+.. -..-...++...+ -.-+++||
T Consensus 182 e~fdvIIvDTSGRh~q---e~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQa--ae~Qa~aFk~~vd-----vg~vIlTK 249 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQ---EASLFEEMKQVSKA--IKPDEIIFVMDASIGQA--AEAQARAFKETVD-----VGAVILTK 249 (483)
T ss_pred cCCcEEEEeCCCchhh---hHHHHHHHHHHHhh--cCCCeEEEEEeccccHh--HHHHHHHHHHhhc-----cceEEEEe
Confidence 3567999999997653 45566677666543 36999999999983332 2223334443322 45567888
Q ss_pred CCCCC
Q 040649 147 GDDLE 151 (371)
Q Consensus 147 ~D~~~ 151 (371)
.|...
T Consensus 250 lDGha 254 (483)
T KOG0780|consen 250 LDGHA 254 (483)
T ss_pred cccCC
Confidence 88663
|
|
| >KOG3905 consensus Dynein light intermediate chain [Cell motility] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=66.09 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.+.+|+|+|.+|+||||||..|-|.+.+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kk 80 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKK 80 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCC
Confidence 456899999999999999999999886544
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=63.42 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.+++|+|++|+|||||+++|.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 58999999999999999999843
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.4e-05 Score=77.60 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++++|++|+|||||++.|+|...+.+
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 376 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTE 376 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 567899999999999999999999887655
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.5e-05 Score=68.92 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCC
Confidence 345899999999999999999999876544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0011 Score=62.83 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=53.9
Q ss_pred EEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC--------CCCHHHHHHHHHHH
Q 040649 58 CEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS--------RFSQEEEAAVHRLQ 129 (371)
Q Consensus 58 ~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~--------~~~~~~~~~l~~l~ 129 (371)
.....+.+ .+..+.++|.+|--. -.+ -+..+..++++||||++.++ ..+.-..+.+..+.
T Consensus 185 I~e~~F~~-k~~~f~~~DvGGQRs-------eRr----KWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~ 252 (354)
T KOG0082|consen 185 IVEVEFTI-KGLKFRMFDVGGQRS-------ERK----KWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFE 252 (354)
T ss_pred eeEEEEEe-CCCceEEEeCCCcHH-------Hhh----hHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHH
Confidence 33344444 667889999999321 111 22336889999999998762 22233355566666
Q ss_pred HHhCCCCC--CeEEEEEeCCCCCCC
Q 040649 130 TLFGKKIF--DYMIVVFTGGDDLED 152 (371)
Q Consensus 130 ~~~~~~~~--~~~ilv~tk~D~~~~ 152 (371)
..+..+++ .++|+++||.|++.+
T Consensus 253 sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 253 SICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred HHhcCcccccCcEEEEeecHHHHHH
Confidence 66665543 489999999998744
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.9e-05 Score=76.37 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-+|+|+|++|+|||||++.|+|...+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 4569999999999999999999988776544
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.6e-05 Score=80.16 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|++|+|||||++.|+|...+.++
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G 398 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCc
Confidence 4568999999999999999999998876553
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.8e-05 Score=63.06 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=59.8
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.+...+|++++|+|++.++...+..+.+.+... .. ..|+++|+||+|.... ..+..++.. +-. ..
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~--~~p~ilVlNKiDl~~~--~~~~~~~~~--------~~~-~~- 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KP--HKHLIFVLNKCDLVPT--WVTARWVKI--------LSK-EY- 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cC--CCCEEEEEEchhcCCH--HHHHHHHHH--------Hhc-CC-
Confidence 345677999999999977766677777777643 21 2499999999998754 333333221 211 11
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+. ....|++++.++..|++.+....
T Consensus 69 ---~~~-~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 ---PTI-AFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ---cEE-EEEeeccccccHHHHHHHHHHHH
Confidence 111 13467788899999999987664
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.8e-05 Score=78.80 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|+|||||++.|+|...+.++
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G 387 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 4678999999999999999999998876553
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.8e-05 Score=73.46 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
.....++++|+|-+++||||+||+|........+.. +++|...+. +. .+..+.|+|.||+...+.+
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~-pGvT~smqe--V~--Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV-PGVTRSMQE--VK--LDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCC-ccchhhhhh--ee--ccCCceeccCCceeecCCC
Confidence 345568999999999999999999998887555433 445544332 21 4567899999998865443
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.6e-05 Score=67.19 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||++.|+|...+.+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 58 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVELSS 58 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 45899999999999999999999876544
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00013 Score=61.07 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 040649 22 VVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g 41 (371)
|+++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988864
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.014 Score=63.34 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHH----hCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSI----LGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L----~g~~~~~~ 47 (371)
|--++||++|+||||+|++| +|.-+|.+
T Consensus 28 PlTLIvG~NG~GKTTiIEcLKyatTG~lPpns 59 (1294)
T KOG0962|consen 28 PLTLIVGANGTGKTTIIECLKYATTGELPPNS 59 (1294)
T ss_pred CeeeEecCCCCCchhHHHHHHHHhcCcCCCCC
Confidence 34588999999999999986 45544433
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.3e-05 Score=66.68 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.+.+++++|++|+|||||+|.|.|-..|.++
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 3468999999999999999999998887664
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.9e-05 Score=74.33 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+.+.+-|+|||-+++||||+||+|-...+......+ +-|...++.. --+.|++||+||+...+.
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCC-CcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 456688999999999999999999988875443322 2333332221 345788999999986654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.5e-05 Score=78.33 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|+|||||++.|+|...+.+
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~ 394 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 567899999999999999999999877554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.9e-05 Score=78.18 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|||||||++.|+|...+.++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4678999999999999999999998876553
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00065 Score=60.76 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 58 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS 58 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999875443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=54.89 Aligned_cols=117 Identities=13% Similarity=0.201 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc---cccCCCCCccceeEEEEeEEeeCCc--EEEEEeCC----------CCCCC-
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTP----------GLFDS- 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTP----------G~~~~- 82 (371)
..+|++.|+||+||||++..|..... +..+ +..|.... . +|. .+.|+|.. |+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg---Gf~t~EVR-----~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG---GFITPEVR-----E-GGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee---eEEeeeee-----c-CCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 47899999999999999988763221 1111 11111110 0 111 23444443 11111
Q ss_pred ----CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 83 ----SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 83 ----~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
...-+.+.+-....+..+...+|++++ |--.++......+.+.+.+.+.+. +|++.++.+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 112233444555666666667777665 322356555677777888877665 38887776655
|
|
| >KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.3e-05 Score=80.47 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--------------------------------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-------------------------------------- 60 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-------------------------------------- 60 (371)
-+.|+|||..++||||.++++.|..+.+-+.. .+|..+..
T Consensus 29 lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 29 LPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred CCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 36799999999999999999999876553321 11110000
Q ss_pred -----------------EeEEeeCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH
Q 040649 61 -----------------KTTVLKDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE 121 (371)
Q Consensus 61 -----------------~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~ 121 (371)
-.+...+-..+++||.||+..... ..++...++...+..+...++++++.+...+ ..-..
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~at 185 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDIAT 185 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhhhc
Confidence 000001123588999999986533 2356677788888888888898888775542 22223
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 122 EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+...++.-+.. ..++.|+||.|.++.
T Consensus 186 s~alkiarevDp~g--~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 186 SPALVVAREVDPGG--SRTLEVITKFDFMDK 214 (657)
T ss_pred CHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence 44556666653333 488999999997744
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.5e-05 Score=80.08 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|+|||||++.|+|...+.++
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G 520 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998876553
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=67.62 Aligned_cols=30 Identities=37% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~ 56 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDS 56 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999876544
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00047 Score=62.21 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|+||||||||++.+.|...+.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence 4568999999999999999999998876653
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.061 Score=58.39 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|+|||||||++.+|+
T Consensus 26 gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 577999999999999999975
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00076 Score=59.45 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+++|+|++|+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999987
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-05 Score=66.49 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++++|+|||||||+++.|.+...+.++
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~G 56 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSG 56 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence 457899999999999999999877665553
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.2e-05 Score=68.07 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.|+++|+||||||||+|.|.|.+.+.++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 3468999999999999999999998886543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0007 Score=60.69 Aligned_cols=30 Identities=30% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTS 54 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999865444
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00051 Score=61.28 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.+-+|+++|++|||||||++.|.|...|++
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 457899999999999999999999988766
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.8e-05 Score=79.47 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+|+++|++|||||||++.|+|...+.+
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 467999999999999999999999887655
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0029 Score=66.56 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=34.6
Q ss_pred EcCCCCcHHHHHHHHhCCCccccCCC-CCccceeEEEEeEEe--eCCcEEEEEeCCCCCCC
Q 040649 25 LGRTGNGKSATGNSILGRRAFKASAG-SSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 25 vG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~ 82 (371)
+|+-++|||||+|.|+|.....-... ...+|...-...... .....+.|+|+-|....
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~ 61 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGR 61 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCch
Confidence 59999999999999999886443221 112221111111110 12357789999997654
|
It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=8.2e-05 Score=76.38 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998776553
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0001 Score=77.49 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++++|++|+|||||++.|+|...+.+
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 567899999999999999999999877654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00087 Score=63.22 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~ 61 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 345899999999999999999999876554
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00043 Score=68.56 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
.+...|+|+|..|+|||||+..|.|.+.+
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~ 51 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDP 51 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCC
Confidence 34579999999999999999999887653
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00029 Score=60.79 Aligned_cols=24 Identities=38% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++|+|+||+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.01 Score=66.83 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.++|+|++|+||||++.+|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00099 Score=59.52 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
+-+.+|+|++|||||||++.++|...+.
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3489999999999999999999988654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=7.5e-05 Score=76.59 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|++|+|||||++.|+|...+.++
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 5578999999999999999999998776553
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.072 Score=57.66 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred cEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999864
|
|
| >PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00048 Score=63.39 Aligned_cols=67 Identities=28% Similarity=0.279 Sum_probs=46.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC-ccccCCCCCccceeEEEEeEEe--eCCcEEEEEeCCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~ 82 (371)
..+...|.|+|+..+|||.|+|.|+|.. .|..+.+..++|.-.-...... ..+..+.++||.|+++.
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 4456789999999999999999999853 3444444445554433333222 23457999999999883
|
GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00052 Score=61.20 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|||||||.++|+|-..+.++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 4578999999999999999999999886654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00027 Score=62.85 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 3 ERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..+.++..+.-+ ++..++|+|+||+|||||+++|+|...+.++
T Consensus 20 ~~~Ild~v~l~V~--~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G 63 (263)
T COG1127 20 DRVILDGVDLDVP--RGEILAILGGSGSGKSTLLRLILGLLRPDKG 63 (263)
T ss_pred CEEEecCceeeec--CCcEEEEECCCCcCHHHHHHHHhccCCCCCC
Confidence 3344444443333 3467899999999999999999999887764
|
|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.036 Score=59.11 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~ 40 (371)
-+||||+|||||-+|.+++
T Consensus 111 taIvGPNGSGKSNVIDsmL 129 (1293)
T KOG0996|consen 111 TAIVGPNGSGKSNVIDSML 129 (1293)
T ss_pred eeeECCCCCCchHHHHHHH
Confidence 4789999999999999976
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.56 E-value=5.3e-05 Score=62.30 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||+++|+|...+.+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~ 39 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDS 39 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESE
T ss_pred CCEEEEEccCCCccccceeeecccccccc
Confidence 45899999999999999999999887543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00014 Score=67.42 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++-.++|+|++|+|||||+++|+|...
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 446899999999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=56.80 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+|+|+|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999997654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.9e-05 Score=78.05 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|||||||++.|+|...+.++
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G 529 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence 4578999999999999999999998776553
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.003 Score=62.37 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+...++|.||+||||||++..|+-...+.......++. +....... -+|-|..+...+.-...+.+....
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~--~~~~~~~h--------~~t~~~~~~~~s~L~~fesFler~ 178 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN--LKEPENLH--------NETSFLMFPYQSQLAVFESFLLRA 178 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc--cccccccc--------ccchhcccchhhHHHHHHHHHHHH
Confidence 34578999999999999999987443322211111111 11000000 112222221111111222222222
Q ss_pred ----hhhcCCce-----EEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCch
Q 040649 98 ----GMAKDGIH-----AVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKP 168 (371)
Q Consensus 98 ----~~~~~~~d-----~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~ 168 (371)
.....+-+ .+|+|-|.-+-+...+...++.+...+-...+.|+|+++|-+-..+.+ ..-..|
T Consensus 179 ~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~n-nq~rlf-------- 249 (634)
T KOG1970|consen 179 TKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNN-NQDRLF-------- 249 (634)
T ss_pred HhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCc-chhhhc--------
Confidence 11122333 357776765433333444444444444445566999999976543221 111111
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
...+-..++...+.|++... .-+...|..|+.......+
T Consensus 250 ~~d~q~~~ri~~IsFNPIa~------T~MKK~L~ric~~e~~~~s 288 (634)
T KOG1970|consen 250 PKDIQEEPRISNISFNPIAP------TIMKKFLKRICRIEANKKS 288 (634)
T ss_pred hhhhhhccCcceEeecCCcH------HHHHHHHHHHHHHhccccc
Confidence 23344677888888998865 4466667777766554433
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00088 Score=68.54 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|||||||++.|+|...+.+
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~ 61 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=74.08 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|+|||||++.|+|...+.+
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 389 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTV 389 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCC
Confidence 457899999999999999999999876554
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=1.6e-05 Score=70.77 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++||+|+|||||+|.|+|...++++
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence 3468999999999999999999998876653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00025 Score=59.81 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=55.2
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
..++|++|+|+|++.+....+..+...+.. .+ .|+++|+||+|.... ..... +..+....+.++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~~~~~---------~~~~~~~~~~~~ 73 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLE-LG----KKLLIVLNKADLVPK--EVLEK---------WKSIKESEGIPV 73 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHh-CC----CcEEEEEEhHHhCCH--HHHHH---------HHHHHHhCCCcE
Confidence 445799999999986655555444433322 12 499999999997633 22211 111222222233
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++ .|++++.|+++|++.+...++.
T Consensus 74 ~~------iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VY------VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EE------EEccccccHHHHHHHHHHHHhh
Confidence 33 5777889999999999988765
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=74.50 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|||||||.+.|+|...+..+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998886653
|
|
| >KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=5.1e-05 Score=71.73 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=89.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-----------------------------CCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 66 (371)
.....+++|+|+..+||||+...|++..-.... ....+-|.......+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt- 154 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET- 154 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe-
Confidence 345689999999999999998877653211100 00013444444444444
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC-----CCCHH-HHHHHHHHHHHhCCCCCCeE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS-----RFSQE-EEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~-----~~~~~-~~~~l~~l~~~~~~~~~~~~ 140 (371)
..+.+++.|+||.-..- .-+-....++|+-++|+++.- .|... +..--..|....|. .++
T Consensus 155 e~~~ftiLDApGHk~fv-----------~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~l 220 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFV-----------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHL 220 (501)
T ss_pred cceeEEeeccCcccccc-----------hhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceE
Confidence 66789999999976531 111122345688888887741 12211 11122233344443 499
Q ss_pred EEEEeCCCCCCCc--hhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHH
Q 040649 141 IVVFTGGDDLEDN--EKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 141 ilv~tk~D~~~~~--~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
|+++||+|....+ .+..+++.. .+..++...+-+.+.--...+.|..++.++.+..+
T Consensus 221 Vv~vNKMddPtvnWs~eRy~E~~~-----k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSNERYEECKE-----KLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEEeccCCccCcchhhHHHHHH-----HHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9999999976441 223333333 35666654432211111112345555666655443
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=60.28 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+..-+......+|++++|+|++.+....+..++..+ .. +|+++|+||+|.... .....++ ..
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~---k~~ilVlNK~Dl~~~--~~~~~~~---------~~ 70 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GN---KPRIIVLNKADLADP--KKTKKWL---------KY 70 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cC---CCEEEEEehhhcCCh--HHHHHHH---------HH
Confidence 333344455567999999999866655444333322 11 389999999998643 2222111 12
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+...+..++. .|+.++.|+.+|++.+...++
T Consensus 71 ~~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 71 FESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence 2221223333 566778999999999887754
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=63.56 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~ 52 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQK 52 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999876554
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00015 Score=62.45 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+-.|+++|++|||||||+|.+.|--.+..
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~ 59 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTPSR 59 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCcCccc
Confidence 35799999999999999999999776443
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00015 Score=76.24 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G 512 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4568999999999999999999998876553
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=62.74 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~ 47 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTA 47 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999887554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00045 Score=70.48 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998765543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00011 Score=65.37 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS 55 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 446899999999999999999999876444
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00011 Score=66.58 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 54 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999876544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.019 Score=60.96 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=16.2
Q ss_pred EEEcCCCCcHHHHHHHHh
Q 040649 23 VLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 23 ~lvG~~GsGKSTlin~L~ 40 (371)
.|+|++|||||+++-+|+
T Consensus 66 fI~G~NGSGKSAIltAl~ 83 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTALT 83 (1074)
T ss_pred EeecCCCCcHHHHHHHHH
Confidence 788999999999998874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00063 Score=68.86 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~ 65 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDS 65 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999876544
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00087 Score=76.05 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAE 671 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccC
Confidence 456899999999999999999999877544
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00012 Score=65.30 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||++.|+|...+.+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s 41 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAPDE 41 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 46899999999999999999999876544
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=65.36 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||+++|+|...+.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 58 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCc
Confidence 346899999999999999999999876444
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00023 Score=72.60 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G 378 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSG 378 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 5579999999999999999999998765543
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=57.71 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..++|+|++|+|||||++.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6889999999999999999873
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=64.73 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 54 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESS 54 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 446899999999999999999999876544
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=65.04 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSR 56 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999865443
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00012 Score=65.41 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 54 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999865444
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00044 Score=64.21 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.+.+......+|+||+|+|++.+++..+..+.+.+ +. +|+++|+||+|.... .....+.. .+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~---kp~IiVlNK~DL~~~--~~~~~~~~---------~~ 73 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GN---KPRLIVLNKADLADP--AVTKQWLK---------YF 73 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CC---CCEEEEEEccccCCH--HHHHHHHH---------HH
Confidence 33344445566999999999877776655454443 22 399999999997643 22222221 22
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+..+++ .|+.++.++..|++.+..+++.
T Consensus 74 ~~~~~~vi~------iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 74 EEKGIKALA------INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred HHcCCeEEE------EECCCcccHHHHHHHHHHHHHH
Confidence 222223343 4566678899999888877654
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=63.74 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||++.|+|...+.+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 46 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 45899999999999999999999876443
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00078 Score=62.12 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.+-.++++|+||+|||||+++|.+...|.++
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG 61 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCc
Confidence 3468999999999999999999998887764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=65.11 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 57 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTR 57 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999865443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00058 Score=77.73 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+..
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 456899999999999999999999876544
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00024 Score=69.82 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|+|||||||+++.|+|.-.+.++
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G 393 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 4679999999999999999999997776654
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00096 Score=59.54 Aligned_cols=30 Identities=33% Similarity=0.327 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++...+++|++|+||||+++.|+|...+.+
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~ 56 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTE 56 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccC
Confidence 457889999999999999999999877554
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=64.79 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 54 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876544
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.11 Score=54.54 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.=+|||++|||||.|+.+|-
T Consensus 27 ~NvIVGrNGSGKSNFF~AIr 46 (1200)
T KOG0964|consen 27 HNVIVGRNGSGKSNFFHAIR 46 (1200)
T ss_pred cceEecCCCCCchhhHHHhh
Confidence 34778999999999999974
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 371 | ||||
| 3lxx_A | 239 | Crystal Structure Of Human Gtpase Imap Family Membe | 3e-33 | ||
| 3v70_A | 247 | Crystal Structure Of Human Gtpase Imap Family Membe | 2e-28 | ||
| 2xtm_A | 234 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 3e-27 | ||
| 3p1j_A | 209 | Crystal Structure Of Human Gtpase Imap Family Membe | 1e-26 | ||
| 2xto_A | 240 | Crystal Structure Of Gdp-Bound Human Gimap2, Amino | 2e-26 | ||
| 2xtp_A | 260 | Crystal Structure Of Nucleotide-Free Human Gimap2, | 6e-26 | ||
| 2j3e_A | 249 | Dimerization Is Important For The Gtpase Activity O | 2e-05 | ||
| 3def_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 2e-05 | ||
| 3bb4_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 4e-05 | ||
| 3bb3_A | 262 | Crystal Structure Of Toc33 From Arabidopsis Thalian | 4e-05 | ||
| 3bb1_A | 274 | Crystal Structure Of Toc34 From Pisum Sativum In Co | 1e-04 | ||
| 1h65_A | 270 | Crystal Structure Of Pea Toc34-A Novel Gtpase Of Th | 3e-04 |
| >pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239 | Back alignment and structure |
|
| >pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247 | Back alignment and structure |
|
| >pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234 | Back alignment and structure |
|
| >pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209 | Back alignment and structure |
|
| >pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240 | Back alignment and structure |
|
| >pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260 | Back alignment and structure |
|
| >pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249 | Back alignment and structure |
|
| >pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262 | Back alignment and structure |
|
| >pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262 | Back alignment and structure |
|
| >pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262 | Back alignment and structure |
|
| >pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex With Mg2+ And Gmppnp Length = 274 | Back alignment and structure |
|
| >pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The Chloroplast Protein Translocon Length = 270 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 1e-59
Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 8/233 (3%)
Query: 2 GERVINGDWKPTSSSNG--ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE 59
G + P + +VL+G+TG GKSATGNSILGR+ F + + +ITK CE
Sbjct: 10 GRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE 69
Query: 60 MKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQ 119
+++ + V+DTPG+FD+ + SKEI +CI + G HA+LLV + R+++
Sbjct: 70 KRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTE 127
Query: 120 EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179
EE A ++ +FG++ +MI++FT DDL D L DYL E P+ +++++ + +R
Sbjct: 128 EEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR-EAPEDIQDLMDIFGDR 184
Query: 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQ 232
+ +NK + Q QLL L+ V +N YTN + + E + +
Sbjct: 185 YCALNNKATGAEQEA-QRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQT 236
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 2e-58
Identities = 68/243 (27%), Positives = 132/243 (54%), Gaps = 8/243 (3%)
Query: 11 KPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQV 70
K +S E ++L+G+TG GKSA GNSIL ++AF++ GS +TKTC +
Sbjct: 14 KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72
Query: 71 VNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130
+ +IDTP +F E + KE+ +C ++ G H +LLV + R++ +++ A R++
Sbjct: 73 IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKE 131
Query: 131 LFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE 190
+FG+ + IV+FT +DL +L DY+ K L +++ C R F+N+ +
Sbjct: 132 IFGEDAMGHTIVLFTHKEDLNG--GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGS 189
Query: 191 AKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLK 250
+ +QV++L+ + + ++ G YTN ++ ++ + K + ++++ + + + +K
Sbjct: 190 NQD-DQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ---RSKCGPVGSDERVKEFKQSLIK 245
Query: 251 GEE 253
E
Sbjct: 246 YME 248
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 2e-54
Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 22/236 (9%)
Query: 3 ERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKT 62
E++I K TV++LG+ G GKS+T NS++G + + S + + +
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 63 TVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE 122
T+ G +N+IDTPGL ++ + + I + + + V + ++
Sbjct: 80 TM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136
Query: 123 AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVL 182
V + FGK+I+ ++V T +E + E + LK I R
Sbjct: 137 QVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQE 196
Query: 183 FDNKT-------------------KYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNE 219
F++ K + L+ + V + +
Sbjct: 197 FEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDA 252
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 8e-49
Identities = 46/273 (16%), Positives = 93/273 (34%), Gaps = 31/273 (11%)
Query: 3 ERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKT 62
+++ T++++G+ G GKS+T NSI+G R S S + +
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82
Query: 63 TVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSV-RSRFSQEE 121
+ G +N+IDTPGL + ++ I + I +L V + R +
Sbjct: 83 SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138
Query: 122 EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV 181
+ + FGK I++ IV T + +++ + + L ++++ +
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS-KRSEALLQVVRSGASLKK 197
Query: 182 LFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQL 241
+ V ++N G+ N+ E L W+ L
Sbjct: 198 DAQASD----------------IPVVLIENSGRCNKNDSD-----EKVLPNGIAWI-PHL 235
Query: 242 AKEQAARLKGEEVAQIAQRKSNDEIRKLRENLE 274
+ + + + I KL
Sbjct: 236 VQTITEVALNKSESIFVDKNL---IDKLAAADH 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 1e-10
Identities = 46/324 (14%), Positives = 97/324 (29%), Gaps = 85/324 (26%)
Query: 98 GMAKDG----IHAVLLVFSVRSRFS-----------QEEEAAVHRLQTLFGKKIFDYMIV 142
G+ G V L + V+ + E + LQ L + ++
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 143 VFTGGDDLEDNEKTLEDYL-GLECPKPLKEILQLCDN---RWVL--FDNKTKYEAKRTEQ 196
+++ +++ L L KP + L + N F+
Sbjct: 217 SD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----------S 265
Query: 197 VQQLL-----SLVNAVNVKNGGQPYTNEC---FAELKVESKLKQTTIWLEQQLAK--EQA 246
+ LL + + ++ + +V+S L + +L+ + +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREV 322
Query: 247 ARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKET 306
++ IA+ + +N + N DK+ IIE + L+
Sbjct: 323 LTTNPRRLSIIAESIRDGLAT--WDNWK-----------HVNCDKLTTIIESSLNVLEPA 369
Query: 307 ITRVE-QQLA--EEQA-----------TRLKEEEVAQ---------LAQRKSNE---EIH 340
R +L+ A + + +V L +++ E I
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 341 KLRENLERTQRETEDQLHKSYEDR 364
+ L + + E E LH+S D
Sbjct: 430 SIYLEL-KVKLENEYALHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-08
Identities = 54/327 (16%), Positives = 96/327 (29%), Gaps = 79/327 (24%)
Query: 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAA 124
+ + +V D P S E +++ KD + L +F ++E
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMS--------KDAVSGTLRLFWT---LLSKQEEM 78
Query: 125 VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF- 183
V + F + L N K L + E +P + R L+
Sbjct: 79 VQK----------------FVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 184 DNK--TKYEAKRTEQVQQ----LLSLVNAVNVK------NGGQPYTNECFAELKVESKLK 231
DN+ KY R + + LL L A NV +G + KV+ K+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 232 QTTIWL--------EQQLAKEQA--ARLKGEEVAQIAQRKSNDEIRKLRENLESARREIE 281
WL E L Q ++ ++ +D ++ + S + E+
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELR 235
Query: 282 DQMHESNE-------DKI--KRIIEMVESKLKETITRVEQQLAEEQATRLKEEEVAQLAQ 332
+ + + K +T TR K+ A
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-----------TRFKQVTDFLSAA 284
Query: 333 RKSNEEIHKLRENLERTQRETEDQLHK 359
++ + L T E + L K
Sbjct: 285 TTTHISLDHHSMTL--TPDEVKSLLLK 309
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 45/365 (12%), Positives = 104/365 (28%), Gaps = 104/365 (28%)
Query: 58 CEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYV------SKEI-AKCIGM--------AK 101
C K + + QV + + S + + K + K +
Sbjct: 266 C--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 102 DG-------IHAVLLVFSVR---------SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145
I + + + E++++ L+ +K+FD + VF
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFP 382
Query: 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF-DNKT----------KYEAKRT 194
L + ++ ++ K + + K
Sbjct: 383 --PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 195 EQVQQLLSLVNAVNVK------NGGQPYTNECFAE-----LKVESKLKQTTI-------- 235
+ S+V+ N+ + PY ++ F LK ++ T+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 236 -WLEQQLAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKR 294
+LEQ +++ + A A + +++L+ + I D E +
Sbjct: 501 RFLEQ--------KIRHDSTAWNASGSILNTLQQLK----FYKPYICDN-DPKYERLVNA 547
Query: 295 IIEMVESKLKETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETE 354
I++ + EE K ++ ++A +E I + E
Sbjct: 548 ILDFLPK-------------IEENLICSKYTDLLRIALMAEDEAIFE----------EAH 584
Query: 355 DQLHK 359
Q+ +
Sbjct: 585 KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 31/131 (23%)
Query: 249 LKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEMVESK----LK 304
L EE+ D I ++ + R + + E+ +++ +E V L
Sbjct: 46 LSKEEI---------DHIIMSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 305 ETITRVEQQLAEEQATRLKEEEVAQLAQ-----RKSN----EEIHKLRENLERTQRETED 355
I ++Q + TR+ E+ +L K N + KLR+ L +
Sbjct: 96 SPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 356 QLH------KS 360
+ K+
Sbjct: 154 LIDGVLGSGKT 164
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 8e-08
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 228 SKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQRKS---NDEIRKLRENLESARREIEDQM 284
+ L+ T ++L + EE A+ A + +EI KLR+ L + E +
Sbjct: 952 NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI- 1010
Query: 285 HESNEDKIKRIIEMVESKLKETITRVEQQLAE-EQATRLKEEEVAQLAQRKSNEEIHKLR 343
E DK K E + S+LKE T ++ + E + + +E+ + ++K EE +L
Sbjct: 1011 -EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
Query: 344 ENLERTQRETE 354
+L + +
Sbjct: 1070 LDLNDERLRYQ 1080
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 26/156 (16%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Query: 219 ECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARR 278
K+ L+ + L++++ ++ E + + E KLR ++E R
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 279 EIEDQMHESNEDKIKRIIEMVESKLKETITRVEQQLA--EEQATRLK---EEEVAQLAQR 333
E++ + + E+ +KL++ + + + + EE A + K E+ V++L ++
Sbjct: 975 S-EEEAKNATNRVLSLQEEI--AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 334 KS--NEEIHKLRENLERTQRETEDQLHKSYEDRIKR 367
+ E +L + +E + + K + K+
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 14/135 (10%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAF-KASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80
V + G TG+GKS+ N++ G + +A + + T E + V D PG+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 131
Query: 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140
++ + +++ + +RF + + + K+
Sbjct: 132 STNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM-MKKEF---- 178
Query: 141 IVVFTGGDDLEDNEK 155
V T D NE
Sbjct: 179 YFVRTKVDSDITNEA 193
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 32/143 (22%), Positives = 70/143 (48%), Gaps = 15/143 (10%)
Query: 225 KVESKLKQTTIWLEQQLAKEQAARLKGEEVAQIAQRKSND----------EIRKLRENLE 274
K+++K + LE +L KE+ +R + E++ + + +S+D +I +L+ L
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 275 SARREIEDQMHESNEDKIKRIIEMVESK-LKETITRVEQQLAEEQATRLKEEEVAQLAQR 333
E++ + ++ ++ + + + L+ I+ +++ L E+A R K E+ +R
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK----QKR 1147
Query: 334 KSNEEIHKLRENLERTQRETEDQ 356
+EE+ L+ LE T T Q
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQ 1170
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 17/202 (8%)
Query: 170 KEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESK 229
+E+ + + + + E K T+ ++ L + + E +
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV------R 917
Query: 230 LKQTTIWLEQQLAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQ-MHESN 288
L LE+ L + +A R++ EE + E +K+++ + ++E++
Sbjct: 918 LAAKKQELEEILHEMEA-RIEEEEERSQQLQA---EKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 289 EDKIKRIIEMVESKLKETITRVEQQLAE-EQATRLKEEEVAQLAQRKSNEE-----IHKL 342
K + K+++ I +E Q + + +L EE V+ L + EE + KL
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 343 RENLERTQRETEDQLHKSYEDR 364
+ E E E +L K + R
Sbjct: 1034 KNKHESMISELEVRLKKEEKSR 1055
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 5e-06
Identities = 44/312 (14%), Positives = 94/312 (30%), Gaps = 27/312 (8%)
Query: 71 VNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130
+ ++D+PGL D+ A +E + C HA+L V + E +
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVNNC--------HAILFVMRASQPCTLGERRYLENYIK 227
Query: 131 LFGKKIF---------DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV 181
G +F ++ ++L+ +E L + Q + V
Sbjct: 228 GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERV 287
Query: 182 LFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQL 241
+ + +R + Q L + N + ++L+Q
Sbjct: 288 FELSSIQALRRRLKNPQADLDGTGFPKFMD----SLNTFLTRERAIAELRQVRTLARLAC 343
Query: 242 AKEQ---AARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIEM 298
+ A R+ E +K D + L R E + ++ + + + + I E
Sbjct: 344 NHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISES 403
Query: 299 VESKLKETITRVEQQLAEEQATRLKEEEVAQLAQRKSNEEIHKLRENLERTQRETEDQLH 358
S + E Q + ++ + N L++ E+ +
Sbjct: 404 FRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKREAFNAA---LQKAFEQYITDKSAAWT 460
Query: 359 KSYEDRIKRTTE 370
+ E I +
Sbjct: 461 LTAEKDINAAFK 472
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 9/65 (13%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 307 ITRVEQQLAEEQATRL-KEEEVAQLAQRKSNEEIHKLRENLERTQRETEDQLHKSYEDRI 365
I + ++ E ++ R +EE+ +L + + ++ +E E+ +++ E+ ++ +++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKV-MEQEWREKAKKDLEEW-NQRQSEQV 131
Query: 366 KRTTE 370
++
Sbjct: 132 EKNKI 136
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 4e-04
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 254 VAQIAQRKSNDE-IRKLRENLESARREIEDQMHESNEDKIKRIIEMVESKLKETITRVEQ 312
+AQ + E IRK RE + R + D +++ + E + L+E R +
Sbjct: 74 IAQADRLTQEPESIRKWREE-QRKRLQELD---AASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 313 QLAEEQATRLKEEEVAQLAQRKSN 336
Q+ + + ++ A Q ++
Sbjct: 130 QVEKNKINNRIADK-AFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 5e-04
Identities = 9/90 (10%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 238 EQQLAKEQAARLKGEEVAQIAQRKSNDEIRKLRENLESARREIEDQMHESNEDKIKRIIE 297
E + + E+ ++ + + + +E E A++++E+ +E K
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASK-VMEQEWREKAKKDLEEWNQRQSEQVEK---- 133
Query: 298 MVESKLKETITRVEQQLAEEQATRLKEEEV 327
++ ++A++ + + ++
Sbjct: 134 ----------NKINNRIADKAFYQQPDADI 153
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.96 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.96 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.94 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.83 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.82 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.81 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.81 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.8 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.8 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.8 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.78 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.78 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.77 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.76 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.76 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.76 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.75 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.75 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.75 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.74 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.74 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.74 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.74 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.74 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.74 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.74 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.74 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.74 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.73 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.73 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.73 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.73 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.73 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.73 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.73 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.72 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.72 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.72 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.72 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.72 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.72 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.72 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.72 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.72 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.72 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.71 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.71 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.71 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.71 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.71 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.71 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.71 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.71 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.71 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.71 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.71 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.71 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.7 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.7 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.7 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.7 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.7 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.7 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.7 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.7 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.7 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.7 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.7 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.7 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.7 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.7 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.69 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.69 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.69 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.69 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.69 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.69 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.69 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.69 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.69 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.69 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.69 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.69 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.69 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.68 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.68 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.68 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.68 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.68 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.68 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.68 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.68 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.68 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.68 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.68 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.68 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.68 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.68 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.68 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.67 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.67 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.67 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.67 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.66 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.66 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.66 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.66 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.66 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.66 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.66 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.66 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.66 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.66 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.66 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.65 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.65 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.65 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.64 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.64 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.64 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.63 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.63 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.63 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.63 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.63 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.63 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.63 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.63 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.63 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.62 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.61 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.61 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.61 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.61 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.61 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.6 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.6 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.6 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.6 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.6 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.59 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.59 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.58 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.58 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.58 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.58 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.57 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.57 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.57 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.57 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.57 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.56 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.56 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.55 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.55 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.55 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.31 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.54 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.54 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.54 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.53 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.52 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.5 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.5 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.49 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.49 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.48 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.48 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.48 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.48 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.48 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.47 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.46 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.45 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.45 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.45 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.45 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.45 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.44 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.44 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.42 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.4 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.4 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.4 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.39 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.38 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.37 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.37 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.36 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.35 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.33 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.33 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.31 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.27 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.2 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.19 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.19 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.18 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.14 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.14 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.11 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.07 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.03 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.02 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.0 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.97 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.97 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 98.94 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.86 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.79 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.74 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.74 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.68 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.67 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.63 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.63 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.6 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.57 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.56 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.52 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.49 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.48 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 98.39 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.37 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.36 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.35 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.35 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.28 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.27 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.24 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.16 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.16 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.08 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 98.08 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.06 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.03 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.98 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.9 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.63 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.63 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.59 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.58 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.55 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.54 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.53 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.52 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.51 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.51 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.51 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.51 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.51 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.5 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.49 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.49 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.48 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.47 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.47 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.45 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.45 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.45 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.44 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.44 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.43 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.42 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 97.41 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 97.4 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.38 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 97.38 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.37 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.37 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 97.37 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.37 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.36 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 97.34 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.34 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.33 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.32 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.31 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.31 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.31 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.28 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.28 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.27 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.27 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.26 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.26 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.26 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.25 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.24 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.23 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.2 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.2 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.19 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.19 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.19 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.18 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 97.17 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.17 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.17 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.17 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.15 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.13 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.13 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.1 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.1 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 97.09 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.08 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.05 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.04 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.02 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.99 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 96.98 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.96 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 96.95 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.94 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 96.94 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.93 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.93 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.92 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.9 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.88 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.88 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.86 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.86 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.86 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.83 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.82 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 96.81 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.78 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.78 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 96.77 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 96.75 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.75 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.74 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.72 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.72 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.69 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.69 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.68 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.66 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.65 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.62 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.62 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.61 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.61 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.61 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.61 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.59 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.59 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.58 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.58 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.57 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.55 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.53 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.53 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.52 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.52 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.52 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.51 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 96.48 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.45 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.44 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 96.43 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.39 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.39 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.38 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.36 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.36 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.36 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 96.36 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.35 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.33 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.3 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.3 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.28 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.28 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.26 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.24 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.24 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.23 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.22 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.21 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.2 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.2 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.19 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.18 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.17 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.16 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.16 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.15 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.14 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.12 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.09 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.09 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.07 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.07 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.06 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.06 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.05 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.05 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.02 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.01 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.0 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.99 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 95.99 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.98 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.97 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.97 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.96 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.92 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.91 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.91 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.9 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.87 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.86 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.86 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.83 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 95.83 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 95.83 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.82 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.81 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.8 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.78 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.78 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.74 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.74 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.73 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.73 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.71 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.71 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.69 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.69 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.68 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.66 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.65 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 95.65 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.65 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.64 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.63 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.62 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 95.62 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 95.61 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.52 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.51 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.51 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.49 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.47 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.47 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.47 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.43 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.43 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.39 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.39 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.38 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.35 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.35 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.35 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.34 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.33 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.33 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 95.32 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 95.31 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.28 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.26 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.24 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.21 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.18 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.13 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.13 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 95.08 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 95.06 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 95.06 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 95.05 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.03 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.99 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.98 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 94.97 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.95 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.91 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 94.89 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.84 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 94.83 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.78 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.74 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 94.71 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 94.7 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.65 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.65 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.61 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.55 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.53 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 94.47 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.45 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 94.43 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 94.39 |
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=225.56 Aligned_cols=208 Identities=37% Similarity=0.661 Sum_probs=146.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+.++|+|+|++|+|||||+|+|+|...+.+.....++|..+......+ .+..+.||||||+++...+.......+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34568999999999999999999999988665544445666666666666 78899999999999877666677778888
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
++..+++++|++|+|+|++ +++..+...+..+...++.....|+++|+||+|.+.. ..+.+++.. ....++.++..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHH
Confidence 8888889999999999998 6777888888888887776555699999999998876 677777763 35568999999
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESK 229 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~ 229 (371)
|+.++++|++... ++.+..++.+|+..+..++..+++.+|++++|.+++++.+
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~ 233 (239)
T 3lxx_A 181 FGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQ 233 (239)
T ss_dssp HSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC-------------
T ss_pred cCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 9999999998763 4566789999999999999999999999999998885443
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=204.47 Aligned_cols=205 Identities=31% Similarity=0.563 Sum_probs=162.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
+..+..+|+|+|++|+|||||+|+|+|...+.....+.++|..+....+.+ .+..+.||||||+.+...........+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 444568999999999999999999999886655444443566666555666 7889999999999887665555666677
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-CCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT-GGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t-k~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.++..+++++|++|+|+|++ +++..+..++..+...++.....|+++|+| |+|.... .+..++.......++.++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHH
Confidence 77777889999999999998 588888888899999888655568888888 9998733 466666544455677788
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK 225 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 225 (371)
..|+.++..|.+ ...||+++.|+.+|++.|..++..+++.+|.++.+....
T Consensus 173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T 2xtp_A 173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ 223 (260)
T ss_dssp HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC-
T ss_pred HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 999988776776 778999999999999999999999887889888776665
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=161.51 Aligned_cols=177 Identities=12% Similarity=0.151 Sum_probs=116.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~ 94 (371)
...++|+|+|.+|+|||||+|+|+|...........++|............+..+.||||||+.+...... .....+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 34589999999999999999999998732222223445555554444423567899999999876543321 1222233
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........+|++|||+|++.+++..+..++..+... . .|+++|+||+|.... ......... +...+.
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l~ 174 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT---G--KPIHSLLTKCDKLTR--QESINALRA-----TQKSLD 174 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG---C--CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEeccccCCh--hhHHHHHHH-----HHHHHH
Confidence 2323335668999999999988888887777777641 2 399999999998765 343333332 333333
Q ss_pred hc-------CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LC-------DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~-------~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+ ..+++. .||+++.|+.+|++.|.+.+...
T Consensus 175 ~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQL------FSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHTCCSCEEEEE------EBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhhhcccCCCCeEEE------eecCCCcCHHHHHHHHHHhcCcc
Confidence 32 223333 57788999999999999887654
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=168.99 Aligned_cols=180 Identities=15% Similarity=0.232 Sum_probs=122.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC-CcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
++++...|+++|++|+|||||+|+|+|...... ....++|.......... . +..+.||||||+.+... .......+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~-~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKK-SDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCT-TCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCcccc-chhHHHHH
Confidence 344557999999999999999999999886322 12233444333333444 5 78999999999987541 23455556
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
......++..+|++++|+|++.+.+..+... +..+... ..|+++|+||+|..... ..+...+ ..+
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~~~~-~~~~~~~--------~~l 148 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKIGPA-KNVLPLI--------DEI 148 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGSSSG-GGGHHHH--------HHH
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-----CCCEEEEEECccCCCCH-HHHHHHH--------HHH
Confidence 6666666778899999999998888777665 5555541 24999999999987331 3333222 233
Q ss_pred HHhcC--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 173 LQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 173 ~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
...++ ..++ ..||+++.|+.+|++.+...++.... .|..
T Consensus 149 ~~~~~~~~~i~------~vSA~~g~gv~~L~~~l~~~l~~~~~-~~~~ 189 (308)
T 3iev_A 149 HKKHPELTEIV------PISALKGANLDELVKTILKYLPEGEP-LFPE 189 (308)
T ss_dssp HHHCTTCCCEE------ECBTTTTBSHHHHHHHHHHHSCBCCC-SSCT
T ss_pred HHhccCCCeEE------EEeCCCCCCHHHHHHHHHHhCccCCC-CCCc
Confidence 34333 2333 36788899999999999999886433 4443
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=151.67 Aligned_cols=171 Identities=15% Similarity=0.255 Sum_probs=105.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|+|+|...........+.|...... .. +..+.+|||||+.+...+.. .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 346899999999999999999999886332222223334333322 22 34689999999887654332 1112222
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........+|++++|+|++++.+..+..++.++... . .|+++|+||+|.... ..+...... +...+.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 164 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK--GKWDKHAKV-----VRQTLN 164 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh--HHHHHHHHH-----HHHHHc
Confidence 2222233566999999999988888877777776641 2 399999999998765 334333222 333222
Q ss_pred h-cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 L-CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~-~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. .+.+++. .|++++.|+.+|++.+.+.+.
T Consensus 165 ~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 IDPEDELIL------FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTSEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCceEE------EEccCCCCHHHHHHHHHHHhc
Confidence 1 1223333 577788999999999887654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=166.40 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=114.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
...|+|+|++|+|||||+|+|+|........ .+++|.......... .+..+.||||||+.+.. ......+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 3579999999999999999999987632211 122333222222233 67789999999998753 234444566666
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhh-HHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKT-LEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~-l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++..+|++++|+|++++++..+..++..+....+ . .|+++|+||+|.... .. +.+.+. .+ ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~--------~~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYH--------EL---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHH--------HT---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHH--------Hh---cC
Confidence 77889999999999998888887766666665432 2 499999999998755 22 222222 11 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|....+.||+++.|+++|++.+...++.
T Consensus 146 -----~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 -----EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp -----TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred -----cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 1122346888999999999999887765
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-18 Score=148.13 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=113.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~ 94 (371)
...++|+|+|.+|+|||||+|+|+|...... ....+.|...... . .+..+.++||||+........ .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFY--L--VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEE--E--ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEE--E--ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 3457999999999999999999999873222 2223333333221 1 345688999999876533221 1222333
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........+|++++|+|++.+.+..+...+.++... . .|+++|+||+|.... ......... +...+.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---N--IPFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 3333344677999999999877888777777777654 2 399999999998755 444443333 444554
Q ss_pred hcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+ .+++. .||+++.|+.+|++.+.+.+..
T Consensus 164 ~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIP------TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEE------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEE------EecCCCCCHHHHHHHHHHHhhc
Confidence 323 23443 5777889999999999887754
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=162.48 Aligned_cols=154 Identities=24% Similarity=0.332 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|.+|+|||||+|+|+|........ ..+.|.......+.+ ++..+.||||||+.+.........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 45899999999999999999999987532221 233444444444555 7889999999999877655555555555554
Q ss_pred hhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...++|++|||++++ .+++..+..++..+...++...+.|+++|+||+|....+...+++|+.. ....++.++..+
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~ 189 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAG 189 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHH
Confidence 245789999999876 3577788889999999998777779999999999865544677777753 223355555544
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=158.24 Aligned_cols=196 Identities=21% Similarity=0.319 Sum_probs=127.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|+|+|........ ..++|..+....... .+..+.||||||+.+...........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45899999999999999999999987633222 233343333333444 7778999999999876544343444443332
Q ss_pred hhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...++|++|||+|++ .+++..+..++..+...++...+.|+++|+||+|...+.+.++++|+.. ....++.++...
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 245789999998876 3677778888999988888765669999999999876544467777653 222334333311
Q ss_pred ----------CCceEeecCcchh---------hHhhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 177 ----------DNRWVLFDNKTKY---------EAKRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 177 ----------~~r~~~f~~~~~~---------sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
..++.+..+.... ..........|+..|..++...+...+.+
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d 253 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 253 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence 1233333332110 00111236699999999998887765544
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-18 Score=151.13 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=104.7
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
|.......+|+|+|.+|+|||||+|+|+|...... ...+.|.......... .+..+.||||||+.+..........
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~- 98 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE- 98 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-
Confidence 33334568999999999999999999999875322 1233344444444444 6678999999999764321111100
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHH---HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQE---EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL 169 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~---~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l 169 (371)
...+......+|++|+|+|++++.+-. ...++..+...++ ..|+++|+||+|........... .. .+
T Consensus 99 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~~~~~~-~~-----~~ 168 (228)
T 2qu8_A 99 -MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNMDSLSIDN-KL-----LI 168 (228)
T ss_dssp -HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCCHHH-HH-----HH
T ss_pred -HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCchhhHHHH-HH-----HH
Confidence 111222356779999999998654422 2334444433211 24999999999987542111110 00 13
Q ss_pred HHHHHhcC--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+ ..++ ..||+++.|+.+|++.+...+..
T Consensus 169 ~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 169 KQILDNVKNPIKFS------SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHHHCCSCEEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEE------EEecccCCCHHHHHHHHHHHHHH
Confidence 34444443 2333 36788899999999998876654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=152.17 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~~~~ 97 (371)
++|+|+|.+|+|||||+|+|+|...... ..+++|.......+.+ ++..+.||||||+.+...... ...+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~- 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQ- 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHH-
Confidence 5899999999999999999999875332 2345666666655665 778999999999987643100 111112211
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
......+|++|+|+|+++ . .....+...+. .. ..|+++|+||+|..... . ....+..+...++
T Consensus 78 ~~~~~~~d~vi~VvDas~-~-~~~~~l~~~l~---~~--~~pvilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg 140 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACH-L-ERHLYLTSQLF---EL--GKPVVVALNMMDIAEHR--G--------ISIDTEKLESLLG 140 (256)
T ss_dssp HHHHSCCSEEEEEEEGGG-H-HHHHHHHHHHT---TS--CSCEEEEEECHHHHHHT--T--------CEECHHHHHHHHC
T ss_pred HHhhCCCCEEEEEeeCCC-c-hhHHHHHHHHH---Hc--CCCEEEEEEChhcCCcC--C--------cHHHHHHHHHHcC
Confidence 112267899999999984 1 22222333332 22 24999999999965331 0 1112344445556
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNEC 220 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~ 220 (371)
.++++ .||+++.|+++|++.+... .... ..|...+
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~-~~~~-~~y~~~~ 175 (256)
T 3iby_A 141 CSVIP------IQAHKNIGIPALQQSLLHC-SQKI-KPLKLSL 175 (256)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHTC-CSCC-CCCCCCC
T ss_pred CCEEE------EECCCCCCHHHHHHHHHhh-hcCc-ccCCHHH
Confidence 55555 6788899999999999887 3322 2566543
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-17 Score=167.41 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcc-ce----------eEEE--------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAI-TK----------TCEM-------------------------- 60 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~-t~----------~~~~-------------------------- 60 (371)
+..+|+|+|.+|+|||||+|+|+|....+.+..+... .+ +..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4589999999999999999999999865543322110 00 0000
Q ss_pred ---------------EeEEeeC---CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHH
Q 040649 61 ---------------KTTVLKD---GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE 122 (371)
Q Consensus 61 ---------------~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~ 122 (371)
..+.++. ...+.||||||+.+... ....+..++..+|++|||+|++++++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 0000000 04689999999764211 122333344567999999999988887776
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 123 AAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 123 ~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+... +. ....|+++|+||+|....
T Consensus 220 ~~l~~~---l~-~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENY---IK-GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHH---TT-TSCCCEEEEEECGGGGGG
T ss_pred HHHHHH---HH-hhCCCEEEEEECcccccc
Confidence 554321 21 112489999999997643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=156.14 Aligned_cols=172 Identities=17% Similarity=0.247 Sum_probs=99.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC----CccceeEEEEeEEee-CCc--EEEEEeCCCCCCCCcch---HH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SAITKTCEMKTTVLK-DGQ--VVNVIDTPGLFDSSAES---EY 88 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~--~i~liDTPG~~~~~~~~---~~ 88 (371)
..+|+|+|.+|+|||||+|+|+|...+...... ...|........... ++. .++||||||+++..... ..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 479999999999999999999998876543210 022222222222221 332 89999999997653321 11
Q ss_pred HH----HHHHHHHhh---------hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch
Q 040649 89 VS----KEIAKCIGM---------AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE 154 (371)
Q Consensus 89 ~~----~ei~~~~~~---------~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~ 154 (371)
+. ..+..++.. ....+|+++|+++.. .++...+..+++.+.. ..|+++|+||+|....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~-- 159 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP-- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--
Confidence 11 111222221 123578999999665 5788888777776654 2499999999998765
Q ss_pred hhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 155 KTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 155 ~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..+... +...+..++.+++.| |+.++.++.+|++.+...++
T Consensus 160 ~e~~~~~~~-----i~~~l~~~~i~v~~~------sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCCCC-----------------CHHHHHTCS
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEEcC------CCCCChhHHHHHHHHhcCCC
Confidence 555555443 566666677776665 45567899999998887654
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=145.72 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=105.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|.+|+|||||+|++++....... .++++.......+.+ ++..+.+|||||.......
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----------- 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM----------- 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------
Confidence 34579999999999999999999987764322 122333333333444 6778999999997654221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
....+..+|++++|+|++++........+..+. ... .|+++|+||+|........+...+.. ...+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 234567889999999998766666555554432 223 39999999999875422222222221 00011111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..+.. ...||+++.|+.+|++.+...+...
T Consensus 142 ~~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 142 GGDTIF----CKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp TSSEEE----EECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CCcccE----EEEecCCCCCHHHHHHHHHHhhhhh
Confidence 111112 2367888999999999998776653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=146.77 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=104.5
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHH
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
.........+|+|+|++|+|||||+|.+++...........+. ......... .....+.++||||.......
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----- 87 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTVYRHDKRIKLQIWDTAGQERYRTI----- 87 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCC--EEEEEEEEETTEEEEEEEEECCSCCSSCCS-----
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeE--EEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----
Confidence 3333344579999999999999999999987753322222222 222222222 12347899999997653221
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL 169 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l 169 (371)
....+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ..
T Consensus 88 ------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~ 150 (189)
T 2gf9_A 88 ------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE---------DG 150 (189)
T ss_dssp ------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HH
T ss_pred ------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH---------HH
Confidence 2345678899999999984332222 23444555443223 499999999997643111111 13
Q ss_pred HHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+...++..++. .|++++.|+.+|++.+...+..
T Consensus 151 ~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 151 RRLADDLGFEFFE------ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 3444445544443 5777889999999998876643
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=148.23 Aligned_cols=166 Identities=20% Similarity=0.091 Sum_probs=101.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
......+|+|+|.+|+|||||+|.+++...........+.+.. ...... .....+.++||||.....
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~---------- 86 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNELHKFLIWDTAGQERFH---------- 86 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSSEEEEEEEEECCSGGGG----------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCEEEEEEEEcCCCchhhH----------
Confidence 3345689999999999999999999987753222222222222 222222 134578999999965321
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
......+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ .+..+
T Consensus 87 -~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~---------~~~~~ 154 (192)
T 2fg5_A 87 -SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLK---------DAKEY 154 (192)
T ss_dssp -GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHH
T ss_pred -hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHH---------HHHHH
Confidence 112234567799999999985433222 33444555443223 499999999997632111121 13445
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+..++. .|++++.|+.+|++.+.+.+..
T Consensus 155 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 155 AESIGAIVVE------TSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HHTTTCEEEE------CBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHcCCEEEE------EeCCCCcCHHHHHHHHHHHHHh
Confidence 5545544443 5777889999999999876654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=146.92 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|++|+|||||+|.|+|....... ...++|.......+.+ ++..+.++||||+...... .........
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~---~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDE---VERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSH---HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhH---HHHHHHHHH
Confidence 4579999999999999999999987642111 1223343333334444 6778999999998754211 111111112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
...+..+|++++|+|++++.+.....++..+....... .|+++|+||+|+.... . .+. ...+
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~-~---~~~------------~~~~ 139 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGET-L---GMS------------EVNG 139 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCCC-C---EEE------------EETT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcch-h---hhh------------hccC
Confidence 23456789999999998666554555666666554333 4999999999964321 0 000 0011
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+ ...||+++.|+++|++.+...+..
T Consensus 140 ~~~------~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 140 HAL------IRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEE------EECCTTTCTTHHHHHHHHHHHC--
T ss_pred Cce------EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 122 236888999999999998876543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=142.88 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=102.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+..+|+|+|++|+|||||+|+|++...... ...+.+.......+.+ ++ ..+.++||||......
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 73 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT--------- 73 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS---------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh---------
Confidence 34568999999999999999999998876422 2233343344444444 44 5789999999543221
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
....++..+|++++|+|++++.+... ..++..+....+ ..|+++|+||+|.......... ....+
T Consensus 74 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~ 139 (181)
T 3tw8_B 74 --ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETE---------DAYKF 139 (181)
T ss_dssp --CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHH---------HHHHH
Confidence 12345678899999999985432222 223444444332 2499999999997643111111 12334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+.+++. .|++++.|+.+|++.+...+..
T Consensus 140 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 140 AGQMGIQLFE------TSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 4444555554 5777889999999998876654
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-18 Score=154.42 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=115.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch--HHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES--EYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~--~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|+|+|...... ..+++|.......+.+ .+..+.+|||||+.+..... ......+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~- 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC- 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHH-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHH-
Confidence 47899999999999999999999875222 2345666665555555 67889999999998764211 011112222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.......+|++++|+|+++ + .....+...+... . .|+++|+||+|..... .+ ...+..+...+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~~--~~--------~~~~~~l~~~l 141 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEKQ--NI--------RIEIDALSARL 141 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHHT--TE--------EECHHHHHHHH
T ss_pred HHHhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhhh--hH--------HHHHHHHHHhc
Confidence 2223468899999999984 2 2334444555543 2 3999999999965321 10 11134444555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC--CCCCChHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG--GQPYTNECFAEL 224 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~--~~~y~~~~~~~~ 224 (371)
+.++++ .||+++.|+.+|++.+...+.... ...|...+-..+
T Consensus 142 g~~~i~------~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~ 185 (274)
T 3i8s_A 142 GCPVIP------LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEA 185 (274)
T ss_dssp TSCEEE------CCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHH
T ss_pred CCCEEE------EEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHH
Confidence 655555 577789999999999988776442 224665544433
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=140.64 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...+.......... ++ ..+.++||||... +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhh
Confidence 34799999999999999999999876532211 12222222223333 33 3678999999653 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....+.. .|+++|+||+|.........+ ....+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQ---------EAESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHH---------HHHHHHH
Confidence 33445678899999999985432222 33444555544433 399999999997643111111 1334455
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.++++.+.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYH------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------ecCCCCCCHHHHHHHHHHHHh
Confidence 55544443 577788999999999887654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=139.22 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+++|++|+|||||+|.+++...... ....++|.......... ++..+.++||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 6899999999999999999998764211 11233343444444444 677899999999876431 11223334445
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN- 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~- 178 (371)
.+..+|++++|+|++.+++..+......+... . .|+++|+||+|..... .. +..+. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~~~~-~~------------~~~~~-~~~~~ 136 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK---G--KPVILVATKVDDPKHE-LY------------LGPLY-GLGFG 136 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH---T--CCEEEEEECCCSGGGG-GG------------CGGGG-GGSSC
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc---C--CCEEEEEECcccccch-Hh------------HHHHH-hCCCC
Confidence 56788999999999977888777777766652 2 3999999999976431 11 11111 2232
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.++ ..|++++.|+.+|++.+.+.+
T Consensus 137 ~~~------~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 137 DPI------PTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp SCE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred CeE------EEecccCCChHHHHHHHHHhC
Confidence 333 367888999999999887654
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=151.31 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|+|+|.... . ...+++|.......+.+ .+..+.+|||||+.+...... .+......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQH-V-GNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSI---DELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEE-E-EECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCH---HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcc-c-CCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCH---HHHHHHHh
Confidence 478999999999999999999998762 2 22345565555555555 778899999999987543221 11222222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|+++. ......+..+... +. .|+++|+||+|..... ........+...++.
T Consensus 77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~~----------~~~~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEM-EV---KNIILVLNKFDLLKKK----------GAKIDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHHH----------TCCCCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCcc--hhhHHHHHHHHhc-CC---CCEEEEEEChhcCccc----------ccHHHHHHHHHHcCC
Confidence 234688999999999842 2222333333332 21 3999999999965221 011114445555566
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
++++ .|++++.|+.+|++.+...+....
T Consensus 141 ~~~~------~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 PVIP------TNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp CEEE------CBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred cEEE------EEeCCCCCHHHHHHHHHHHHhccc
Confidence 6554 677888999999999998887654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.9e-18 Score=142.28 Aligned_cols=162 Identities=18% Similarity=0.087 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+..+|+|+|++|+|||||+|++++...........+.+ .......+. ....+.++||||.... ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNELHKFLIWDTAGLERF-----------RAL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCeEEEEEEEcCCCchhh-----------hcc
Confidence 34799999999999999999999887533222222222 222223331 2357899999997532 112
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|.........+ ....+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~~v~~~---------~~~~~~~~ 140 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMER---------DAKDYADS 140 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccccccCHH---------HHHHHHHH
Confidence 2234567799999999985433222 33445555543333 489999999997643111111 13334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+.+++. .|++++.|+.+|++.+.+.+.
T Consensus 141 ~~~~~~~------~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 141 IHAIFVE------TSAKNAININELFIEISRRIP 168 (170)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHCC
T ss_pred cCCEEEE------EeCCCCcCHHHHHHHHHHHHh
Confidence 4544443 577788999999999887654
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=142.47 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|.+++...........+.+ ......... ....+.++||||..... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 79 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE--FGTRIIEVSGQKIKLQIWDTAGQERFR-----------A 79 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC--EEEEEEEETTEEEEEEEEECTTGGGTC-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCeEEEEEEEECCCChHhh-----------h
Confidence 345899999999999999999999877532221112222 222222231 22478999999954321 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|.........+ .+..+..
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 148 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE---------EAKQFAE 148 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH---------HHHHHHH
Confidence 12233456799999999985433222 23444455544333 499999999997633111111 1344455
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .|++++.|+.++++.+.+.+.
T Consensus 149 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 149 ENGLLFLE------ASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHHC
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 45544444 577788999999999876653
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=142.52 Aligned_cols=164 Identities=19% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|++|+|||||+|.+++...........+.+ .......+. ....+.++||||.... ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 76 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERY-----------HS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--EEEEEEEETTEEEEEEEEECCCSGGG-----------GG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--EEEEEEEECCEEEEEEEEeCCCChhh-----------hh
Confidence 345799999999999999999999876543322222222 222223331 2347899999995432 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+ .....++..+....... .|+++|+||+|.........+ .+..+..
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~---------~~~~~~~ 145 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAE---------DAQTYAQ 145 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHH---------HHHHHHH
Confidence 12334567899999999985433 22234455555543323 499999999998654211121 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++. .|++++.|+.+|++.+...+..
T Consensus 146 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 146 ENGLFFME------TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HTTCEEEE------CCSSSCTTHHHHHHHHHHTCC-
T ss_pred HcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 44544444 5677889999999998776543
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=141.47 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=101.4
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHH
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSK 91 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ 91 (371)
.+++..+..+|+|+|.+|+|||||+|.+++........ ..|.......+.. .+..+.||||||....
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~--------- 76 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFEK-GRVAFTVFDMGGAKKF--------- 76 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEEE-TTEEEEEEEECCSGGG---------
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEEe-CCEEEEEEECCCCHhH---------
Confidence 34455567899999999999999999999887643111 1122233333343 6778999999997542
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC---------CCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK---------KIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~---------~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
......++..+|++|+|+|++++.+-.. ...++...+.. ....|+++|+||+|+... ....++..
T Consensus 77 --~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~ 150 (199)
T 4bas_A 77 --RGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVE 150 (199)
T ss_dssp --GGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred --HHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHH
Confidence 2233455778999999999985433222 11222222221 012499999999998765 33332222
Q ss_pred ccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 163 LECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. .+..+....+..++ ..||+++.|+.++++.|...+...
T Consensus 151 ~~---~~~~~~~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 151 IL---DLTTLMGDHPFVIF------ASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp HH---THHHHHTTSCEEEE------ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred Hh---cchhhccCCeeEEE------EeeCCCccCHHHHHHHHHHHHHHH
Confidence 10 01122122222222 367888999999999998876654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=145.69 Aligned_cols=161 Identities=19% Similarity=0.117 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.|++........ .............. ..+..+.|+||||....... .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI-----------T 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------H
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------h
Confidence 4799999999999999999999876532221 11122222222222 12347899999998653221 2
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++.+.+... ..++..+...... ..|+++|+||+|.......... ....+....
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTE---------EARMFAENN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHH---------HHHHHHHHc
Confidence 233567799999999984332211 2233333332222 3499999999997643111111 133344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++. .|++++.|+.+|++.+...+.
T Consensus 161 ~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 161 GLLFLE------TSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp TCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 544444 577788999999999876554
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=142.18 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...+|+|+|++|+|||||+|++++...........+. .......... .+..+.++||||.... ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA--AFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--EEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhh
Confidence 3479999999999999999999976653222112222 2222223331 2447899999996532 111
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 140 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQ---------EAQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHH---------HHHHHHHH
Confidence 2334567899999999985432221 23444444443333 399999999997643111111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++. .|++++.|+.+|++.+...+.
T Consensus 141 ~~~~~~~------~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 141 NSLLFME------TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHTSC
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 4444443 577788999999999877654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-17 Score=141.33 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=106.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|+|++....... ....+.......+.+ ++ ..+.|+||||......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh----------
Confidence 34579999999999999999999987653322 233333344444444 44 4689999999543211
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.....+..+|++++|+|++++.+-. ...++..+....... .|+++|+||+|.......... ....+.
T Consensus 81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~ 148 (196)
T 3tkl_A 81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYT---------TAKEFA 148 (196)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHH---------HHHHHH
Confidence 1223456789999999998533222 233445555544433 399999999998754211111 134455
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...+.+++. .|++++.|+.++++.+.+.+...
T Consensus 149 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 149 DSLGIPFLE------TSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp HHTTCCEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 555655554 57778899999999998776654
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-17 Score=138.62 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=102.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|.+++...... .....+.......+.. ++ ..+.++||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 3458999999999999999999998765322 1222232333333333 44 4789999999543 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|.......... ....+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFL---------EASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH---------HHHHHH
Confidence 334556778999999999985332222 23444444443333 499999999997533111111 123344
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+..++. .|++++.|+.++++.+...+.
T Consensus 143 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 143 QENELMFLE------TSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 444444443 577788999999999876554
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=144.74 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=106.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|.+|+|||||+|+|+|...... ..+++|.......+.. .+..+.||||||..+...... .+.+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~--~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~- 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVA--NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDY- 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHH-
Confidence 47899999999999999999999876422 2345665555555554 678999999999987543221 11111111
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|+++ +.. ...++..+. ... .|+++|+||+|...... .......+...++.
T Consensus 79 ~~~~~~d~ii~V~D~t~-~~~-~~~~~~~l~---~~~--~pvilv~NK~Dl~~~~~----------i~~~~~~l~~~lg~ 141 (258)
T 3a1s_A 79 LLKGDADLVILVADSVN-PEQ-SLYLLLEIL---EME--KKVILAMTAIDEAKKTG----------MKIDRYELQKHLGI 141 (258)
T ss_dssp HHHSCCSEEEEEEETTS-CHH-HHHHHHHHH---TTT--CCEEEEEECHHHHHHTT----------CCBCHHHHHHHHCS
T ss_pred HhhcCCCEEEEEeCCCc-hhh-HHHHHHHHH---hcC--CCEEEEEECcCCCCccc----------hHHHHHHHHHHcCC
Confidence 11257899999999984 322 222333333 222 49999999999653210 11124455555565
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++++ .||+++.|+.+|++.+...+.
T Consensus 142 ~vi~------~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVVF------TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEE------EEeeCCcCHHHHHHHHHHHhh
Confidence 5554 677788999999999998776
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=139.56 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|++|+|||||+|++++...... ..|.......+.+ ++..+.++||||.... ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHHH
Confidence 458999999999999999999987665321 1222333344455 6788999999997532 1223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+..+|++++|+|++++.+-.. ...++...+... ...|+++|+||+|.... ....+.... +. ...
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 137 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPA 137 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chh
Confidence 455678999999999986533222 122333322210 22499999999998755 222221111 00 011
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+....+. ....|++++.|+.++++.+.+.+..
T Consensus 138 ~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 138 LKDRKWQ---IFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTSCEE---EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceE---EEECcCCCCcCHHHHHHHHHHHHhh
Confidence 1111111 1236788899999999999877654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-17 Score=141.27 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.|++....... ....+.......+.+ ++ ..+.||||||......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT----------- 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence 3579999999999999999999987753221 122222233333333 33 3789999999765322
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++++.+-.. ..++..+....+.. .|+++|+||+|.........+ ....+..
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 141 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYD---------VAKEFAD 141 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHHH
Confidence 12345678899999999985433222 23444454443333 499999999998754211111 1233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++. .||+++.|+.+|+..+...+..
T Consensus 142 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ANKMPFLE------TSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HTTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44544444 5777889999999998876654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=144.96 Aligned_cols=164 Identities=13% Similarity=0.024 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++...+.... ..|.......+.+ ++..+.++||||..... ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~ 84 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------NLW 84 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------HHH
Confidence 56899999999999999999999887433221 2233333444455 67899999999966531 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH-
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ- 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~- 174 (371)
...+..+|++++|+|++++.+-.. ...+..+...... ....|+++|+||+|.... ...++ +...+.
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~---------~~~~~~~ 153 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVK---------VSQLLCL 153 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHH---------HHHHHTG
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHH---------HHHHhCh
Confidence 345667899999999985322111 1222333222110 023499999999998754 22222 112221
Q ss_pred -hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 -LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 -~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
......+. ....|++++.|+.+|++.+.+.+..
T Consensus 154 ~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 154 ENIKDKPWH---ICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp GGCCSSCEE---EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred hhccCCceE---EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 11111111 1236788899999999999876643
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-18 Score=143.29 Aligned_cols=162 Identities=17% Similarity=0.100 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|++++........ +..+.........+ ++ ..+.++||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCChhh-----------hhh
Confidence 3689999999999999999999876533222 12222222223333 33 37899999996432 111
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+... ..++..+....+.. .|+++|+||+|...... ... ........+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~--~~~----v~~~~~~~~~~~ 140 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQEGG--ERK----VAREEGEKLAEE 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSC--CCC----SCHHHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccc--ccC----CCHHHHHHHHHH
Confidence 2334567799999999985432222 23344454444333 49999999999864310 000 000112334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..++. .||+++.|+.+|++.+.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 141 KGLLFFE------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4544444 57778899999999887544
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-17 Score=141.79 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=96.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|.+|+|||||+|.|++....... ....+.......+.+ ++ ..+.++||||.... .
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 89 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----------N 89 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-----------H
Confidence 34578999999999999999999987653221 122233333333444 33 37899999995431 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++|+|+|++++.+..+ ..++..+....... .|+++|+||+|.........+ ....+.
T Consensus 90 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~---------~~~~~~ 158 (192)
T 2il1_A 90 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQ---------QGEKFA 158 (192)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH---------HHHHHH
Confidence 112223345699999999985433332 23344555543333 499999999997643111111 123333
Q ss_pred Hhc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
... +..++ ..||+++.|+.+|++.+.+.+..
T Consensus 159 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 159 QQITGMRFC------EASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 332 22333 35788899999999998876543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-17 Score=141.40 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.+++........... +.......+... ....+.+|||||... +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--ceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 4799999999999999999999887533222222 222222223331 234789999999753 12233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+...+
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 143 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE---------RGRQLADHL 143 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH---------HHHHHHHHH
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH---------HHHHHHHHC
Confidence 445667899999999985422121 23444444433223 499999999998654211111 133444444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++. .||+++.|+.++++.+...+..
T Consensus 144 ~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 144 GFEFFE------ASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TCEEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred CCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 544443 5777889999999988766543
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=142.00 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=99.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|.+++....... ...++.......+.+ ++ ..+.|+||||... +...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------FRTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHH
Confidence 478999999999999999999977642211 111112222233333 44 4789999999643 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++..+|++|+|+|++++.+-.. ..++..+....+.. .|+++|+||+|.........+ .+..+...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~---------~~~~~~~~ 163 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLA---------EAQSLAEH 163 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHH---------HHHHHHHH
Confidence 3345667899999999984322211 23444555443333 499999999997643111111 13344554
Q ss_pred cCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+. .++. .||+++.|+.++++.|...+...
T Consensus 164 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 164 YDILCAIE------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 454 3333 67788899999999998766554
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-17 Score=140.67 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|.+++...... ....++.......+.+ ++ ..+.++||||... +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 47999999999999999999997765322 1122222333333334 44 3789999999532 2333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+...
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~---------~~~~~~~~ 160 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ---------RAEEFSEA 160 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH---------HHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHHHH
Confidence 4566788999999999984332221 33445555443333 499999999997633111111 12333344
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++. .||+++.|+.+|+..+...+.
T Consensus 161 ~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 161 QDMYYLE------TSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4444444 577888999999999876554
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=139.69 Aligned_cols=163 Identities=18% Similarity=0.115 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+|+|++|+|||||+|.|++....... .+++.......+.. ++ ..+.|+||||.... .
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----~------- 80 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----A------- 80 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----H-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC---CCccceEEEEEEEE-CCEEEEEEEEECCCCccc----H-------
Confidence 35689999999999999999999987642221 11111122222333 33 37889999997652 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+-. ...++..+...... ...|+++|+||+|.......... .+..+.
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 150 (187)
T 2a9k_A 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRA 150 (187)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHH---------HHHHHH
Confidence 11122234569999999998432211 13344445444431 12499999999997643111111 133445
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+.+++. .|++++.|+.+|+..+.+.+..
T Consensus 151 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 151 EQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------eCCCCCCCHHHHHHHHHHHHHH
Confidence 555544444 5777889999999998876643
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=140.78 Aligned_cols=160 Identities=17% Similarity=0.107 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|.+++...... .....+.........+ ++ ..+.++||||..... ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~ 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------SL 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------HH
Confidence 47999999999999999999997665322 1222333333333333 44 378999999964321 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-. ...++..+....+.. .|+++|+||+|........... ...+...
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 148 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEE---------GERKAKE 148 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHH---------HHHHHHH
Confidence 122344679999999998432222 233444454444433 3999999999976431111111 2233344
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++. .|++++.++.++++.+...+.
T Consensus 149 ~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 149 LNVMFIE------TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HTCEEEE------EBTTTTBSHHHHHHHHHHTCC
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 4444444 567788999999999876554
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=137.44 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEeeC----------CcEEEEEeCCCCCCCCcc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVLKD----------GQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~i~liDTPG~~~~~~~ 85 (371)
....+|+|+|++|+|||||+|++++......... ..+.... ........ ...+.++||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER---- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH----
Confidence 3458999999999999999999998665322111 1111111 12222211 24799999999743
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE 164 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~ 164 (371)
+.......+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|.........+
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~------ 148 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE------ 148 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH------
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH------
Confidence 22234455678899999999985433322 334444444332 122499999999997643111111
Q ss_pred CCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 165 CPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 165 ~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..+....+.+++. .|++++.|+.+|++.|...+.
T Consensus 149 ---~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 ---EARELAEKYGIPYFE------TSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ---HHHHHHHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 133444444544544 567788999999999887654
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.3e-18 Score=146.85 Aligned_cols=167 Identities=16% Similarity=0.073 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|++++...........+.+ .....+.+ ++ ..+.|+||||.... ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIV-DGERTVLQLWDTAGQERF-----------RS 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTC-----------HH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEE-CCEEEEEEEEECCCCcch-----------hh
Confidence 46899999999999999999999876432211111222 22222333 33 46899999997642 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++++.+... ..++..+....... .|+++|+||+|.... ...+ ............+..
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~-~~~~v~~~~~~~~~~ 167 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATE-GQKCVPGHFGEKLAM 167 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHT-TCCCCCHHHHHHHHH
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cccc-cccccCHHHHHHHHH
Confidence 12223345699999999985433222 33444555443333 399999999997521 0000 000000112234444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.+++..+.+.+.
T Consensus 168 ~~~~~~~~------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 TYGALFCE------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCeEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 44544444 577788999999999887664
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=136.63 Aligned_cols=163 Identities=16% Similarity=0.142 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...++.......... ++ ..+.++||||... +..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 45899999999999999999999877532211 122222222222233 43 3789999999543 122
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+. ...+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 144 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAK 144 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHH
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23445667899999999985433222 33445555544333 4999999999987542111111 233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++. .||+++.|+.++++.+...+..
T Consensus 145 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFME------TSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44544444 5777889999999999877654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=139.22 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC-----------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------------------- 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (371)
+..+|+|+|++|+|||||+|+|++........ +.+........+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 45899999999999999999999887532211 11111122222222 22
Q ss_pred ----------cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCC
Q 040649 69 ----------QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIF 137 (371)
Q Consensus 69 ----------~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~ 137 (371)
..+.||||||...... .....+..+|++|+|+|++++.+..+ ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 5789999999544211 12234567799999999985433222 234444444333
Q ss_pred CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.|+++|+||+| ........+ .+..++...+.+++. .||+++.|+.+|++.+...+..
T Consensus 148 ~piilv~NK~D-~~~~~~~~~---------~~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 YIIILVANKID-KNKFQVDIL---------EVQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CEEEEEEECTT-CC-CCSCHH---------HHHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCC-cccccCCHH---------HHHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 49999999999 432112222 134455555555554 5777889999999998876543
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=142.40 Aligned_cols=168 Identities=21% Similarity=0.174 Sum_probs=98.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
+.....+|+|+|.+|+|||||+|+|++........ +...... ...... .....+.||||||.......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD--PTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL-------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC--CCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC--CccceEE-EEEEEECCEEEEEEEEECCCccchHHH--------
Confidence 33456899999999999999999999877532211 1111111 111222 13457899999997653221
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
....+..+|++++|+|++++.+-.. ..++..+....+ ....|+++|+||+|.......... ....+
T Consensus 89 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~---------~~~~~ 155 (201)
T 3oes_A 89 ---PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAV---------EGKKL 155 (201)
T ss_dssp ---CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred ---HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHH---------HHHHH
Confidence 3345678899999999984322111 222222322211 112499999999997643111111 12334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
....+..++. .||+++.|+.++++.+...+....
T Consensus 156 ~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 156 AESWGATFME------SSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHTCEEEE------CCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHhhh
Confidence 4444554444 577888999999999988776543
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=142.54 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCCCCCCC---CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEe
Q 040649 1 MGERVINGDWKPTSSSN---GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVID 75 (371)
Q Consensus 1 mg~~~~~~~~~~~~~~~---~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liD 75 (371)
||+|-+ .+|..++... ...+|+|+|++|+|||||+|.+++........ ...+.......+.. ++ ..+.|+|
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~D 76 (191)
T 2a5j_A 1 MGSSHH-HHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWD 76 (191)
T ss_dssp ----------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEEC
T ss_pred CCcccc-ccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEE
Confidence 555443 3343333332 35689999999999999999999876532211 12222222223333 33 4789999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch
Q 040649 76 TPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE 154 (371)
Q Consensus 76 TPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~ 154 (371)
|||....... ....+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|......
T Consensus 77 t~G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 77 TAGQESFRSI-----------TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRD 143 (191)
T ss_dssp CTTGGGTSCC-----------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCC
T ss_pred CCCchhhhhh-----------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccc
Confidence 9996543211 2234557899999999984332222 23444454443333 49999999999764311
Q ss_pred hhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 155 KTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 155 ~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+ ....+....+..++. .|++++.|+.++++.+.+.+.
T Consensus 144 v~~~---------~~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 144 VKRE---------EGEAFAREHGLIFME------TSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp SCHH---------HHHHHHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred cCHH---------HHHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 1111 123344444544444 567788999999999876554
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=139.87 Aligned_cols=162 Identities=14% Similarity=0.081 Sum_probs=101.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+|+|++|+|||||+|++++.. ... . ..|.......+.+ ++..+.++||||... +...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT-I---SPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS-C---CCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc-c---cccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 456899999999999999999999877 222 1 1122233344445 678899999999632 2333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ...++...... ....|+++|+||+|.... ...++... .+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------~~~ 145 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQE---------ALE 145 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHH---------HTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHH---------HhC
Confidence 4556788999999999985433222 22233332221 112499999999998754 22222111 111
Q ss_pred --hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 --LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 --~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
......+. ....|++++.|+.++++.+.+.+.+.
T Consensus 146 ~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 146 LDSIRSHHWR---IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hhhccCCceE---EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 01111111 12367888999999999999887764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=137.97 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=99.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|++++....... .+..+.......+.+ ++ ..+.++||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 478999999999999999999987653221 122222233333333 33 36889999996543211
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-.. ..++..+....+.. .|+++|+||+|..... ...+ ....+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~-~~~~---------~~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETRV-VTAD---------QGEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTCC-SCHH---------HHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcCc-cCHH---------HHHHHHHH
Confidence 2233567899999999985432222 34455555544333 4999999999974321 1111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++. .|++++.|+.+++..+...+..
T Consensus 137 ~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 4544444 5777889999999999877664
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=142.41 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.....+|+|+|++|+|||||+|+|++....... ...++.......+.+ ++ ..+.||||||......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------- 84 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT--------- 84 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH---------
Confidence 345689999999999999999999987653221 122233333333444 44 4789999999654211
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+..+|++|+|+|++.+.+-.. ..++..+....+.. .|+++|+||+|..... ...+ ....+
T Consensus 85 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~-~~~~---------~~~~~ 150 (213)
T 3cph_A 85 --ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETRV-VTAD---------QGEAL 150 (213)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSCC-SCHH---------HHHHH
T ss_pred --HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcccc-cCHH---------HHHHH
Confidence 12234567899999999984332221 34455555544433 3999999999974221 1111 12334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+.+++. .|++++.|+.+|+..+...+..
T Consensus 151 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 151 AKELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHTCCEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 4444444444 5677889999999998876553
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=139.81 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=79.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... ..+.++.......+.+ ++ ..+.++||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhh
Confidence 457999999999999999999997654211 1112222232333334 44 5789999999643 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~---------~~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKE---------RGEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHH---------HHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHH---------HHHHHHH
Confidence 33455678999999999985432221 23444444443333 499999999998654211111 1333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .||+++.|+.+++..+...+.
T Consensus 142 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 142 DYGIKFME------TSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44544443 577788999999999876654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-17 Score=140.17 Aligned_cols=185 Identities=18% Similarity=0.113 Sum_probs=98.1
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCC
Q 040649 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPG 78 (371)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG 78 (371)
||.+.....-..........+|+|+|.+|+|||||+|.+++.... ... .+++.......+.. ++. .+.++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TEY--IPTAFDNFSAVVSV-DGRPVRLQLCDTAG 77 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CCC--CCcccceeEEEEEE-CCEEEEEEEEECCC
Confidence 444444433334445556789999999999999999999987632 211 11111111222333 443 577999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhh
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKT 156 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~ 156 (371)
....... ....+.++|++++|+|++++.+-... .++..+....+ . .|+++|+||+|..... ..
T Consensus 78 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~-~~ 142 (201)
T 2q3h_A 78 QDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLREDV-KV 142 (201)
T ss_dssp STTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGCH-HH
T ss_pred CHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhch-hh
Confidence 8654221 23456788999999999854333332 34555555443 2 4999999999987541 11
Q ss_pred HHHHhc---c-cCCchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 157 LEDYLG---L-ECPKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 157 l~~~l~---~-~~~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+.. . ........+....+. .++. .||+++.|+.+|++.+...+..
T Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIE------CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCCHHHHHHHHHhcCCcEEEE------EecCCCCCHHHHHHHHHHHHhc
Confidence 111110 0 001123334444443 3333 5788889999999998766543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=134.99 Aligned_cols=160 Identities=14% Similarity=0.211 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|++|+|||||+|.|+|...+... .++.|.......+.+ ++..+.++||||........ ..+.+.....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~- 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI- 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH-
Confidence 68999999999999999999997653321 223333333333444 67789999999987653221 1111111111
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++|++++|+|+++ + .....++..+.. .. .|+++|+||+|.... .. + ......+...++.+
T Consensus 78 ~~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~----~----~~~~~~~~~~~~~~ 140 (165)
T 2wji_A 78 INEKPDLVVNIVDATA-L-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LG----I----EIDVDKLEKILGVK 140 (165)
T ss_dssp HHHCCSEEEEEEETTC-H-HHHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TT----C----CCCHHHHHHHHTSC
T ss_pred hcCCCCEEEEEecCCc-h-hHhHHHHHHHHh---cC--CCEEEEEEchHhccc--cC----h----hhHHHHHHHHhCCC
Confidence 1136799999999973 2 122223333333 12 499999999996422 00 0 01133444444544
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
++. .||+++.|+++|++.+...+
T Consensus 141 ~~~------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 141 VVP------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EEE------CBGGGTBSHHHHHHHHHHHT
T ss_pred EEE------EEcCCCCCHHHHHHHHHHHh
Confidence 443 68889999999999987654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=133.49 Aligned_cols=163 Identities=18% Similarity=0.077 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...+.......+.+ ++ ..+.++||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 45799999999999999999999776532211 12222222233333 44 3789999999543 223
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|..... ...++ +..+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHHH
Confidence 34556778899999999985432222 3344455444331 1224999999999976321 11211 2333
Q ss_pred HH-hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQ-LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~-~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ..+..++. .|++++.|+.++++.+...+..
T Consensus 142 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 142 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 33 22333443 5777889999999998876654
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=133.27 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|++++........ + .+.......... ++. .+.++||||.... . ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~-~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----~-------~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD--P-TIEDFYRKEIEV-DSSPSVLEILDTAGTEQF----A-------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--T-TCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----H-------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCC--C-CcceeEEEEEEE-CCEEEEEEEEECCCchhh----H-------HH
Confidence 4789999999999999999999766532211 1 111111222333 333 5889999996642 1 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|.......... ....+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS---------EGRALAEE 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHH---------HHHHHHHH
Confidence 1222345699999999984322221 2333344443321 23499999999997643111111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+.+++. .|++++.|+.+|++.+...+..
T Consensus 138 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 138 WGCPFME------TSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEE------ecCCCCcCHHHHHHHHHHHHhh
Confidence 4545554 5777889999999999876653
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=140.24 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=101.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
......+|+|+|.+|+|||||+|.+++........ +.++.... ..+.+ ++ ..+.++||||....
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~---------- 86 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVFENYI-ADIEV-DGKQVELALWDTAGQEDY---------- 86 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC--CSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGG----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccC--CcccceEE-EEEEE-CCEEEEEEEEECCCchhH----------
Confidence 33345799999999999999999999876532211 11111111 12233 33 37889999996432
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc-----C
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE-----C 165 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~-----~ 165 (371)
.......+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|.... ....+.+... .
T Consensus 87 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 160 (201)
T 2gco_A 87 -DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVR 160 (201)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCC
T ss_pred -HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCC
Confidence 1223345678899999999984322222 334555555432 2 499999999998765 2222222110 0
Q ss_pred CchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 166 PKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 166 ~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
......+....+. .++. .||+++.|+.+|++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 161 SEEGRDMANRISAFGYLE------CSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 1123344444443 3333 67888999999999987654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=136.11 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=96.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.+++...........+.+. . ..... .....+.++||||..+.. ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~-~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 68 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY--R-QVISCDKSICTLQITDTTGSHQFP-----------AMQ 68 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE--E-EEEEETTEEEEEEEEECCSCSSCH-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE--E-EEEEECCEEEEEEEEECCCchhhH-----------HHH
Confidence 47899999999999999999998765322221111111 1 11122 122368999999976531 111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|.......... ....+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~---------~~~~~~~~~ 139 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS---------EAEALARTW 139 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH---------HHHHHHHHH
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH---------HHHHHHHHh
Confidence 122334699999999984432222 3344555554432223499999999997643111111 122333334
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .|++++.|+.+|++.+.+.+..
T Consensus 140 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 KCAFME------TSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TCEEEE------CBTTTTBSHHHHHHHHHHTCCS
T ss_pred CCeEEE------ecCCCCcCHHHHHHHHHHHHhh
Confidence 444443 5777889999999998876543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=133.46 Aligned_cols=161 Identities=20% Similarity=0.091 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.++|....... ...+.+. . ..... .....+.++||||.... ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-D--RSIVVDGEEASLMVYDIWEQDGG-----------RWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-E--EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-E--EEEEECCEEEEEEEEECCCCccc-----------hhhh
Confidence 478999999999999999999987653221 1122222 1 11222 12346889999996542 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|.........+ ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD---------EGRACAVVF 136 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH---------HHHHHHHHT
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH---------HHHHHHHHh
Confidence 334567899999999984422221 223333333211 122499999999998754211211 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .||+++.|+.++++.+.+.+..
T Consensus 137 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 137 DCKFIE------TSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TCEEEE------CBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcEEE------eccCCCCCHHHHHHHHHHHHHh
Confidence 444443 6788899999999999876653
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=142.69 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...+|+|+|.+|+|||||+|.+++...........+.+. ....... ..+..+.|+||||.. .+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~ 88 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF--KVKTVYRHEKRVKLQIWDTAGQE-----------RYRTI 88 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTE--EEEEEEETTTTEEEEEECHHHHH-----------HCHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEE--EEEEEEECCEEEEEEEEeCCChH-----------HHHHH
Confidence 457999999999999999999998664322111112222 2222222 144579999999932 12333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-. ...++..+....... .|+++|+||+|.......... ....+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTE---------KGQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHHHH
Confidence 444567889999999998432222 133455555543333 499999999997533111111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++. .|++++.|+.++++.+.+.+..
T Consensus 158 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFFE------ASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 4544443 5778889999999998876654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-17 Score=140.51 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||+|.+++........ ...+.......+.. ++ ..+.|+||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 35799999999999999999999876532211 22222222223333 34 4789999999421 111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|..........+ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 22334567899999999985332222 23344444443333 4999999999975331111111 233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.+++..+...+.
T Consensus 159 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFLE------TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44444443 577788999999999876554
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.8e-17 Score=137.04 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.....+|+|+|++|+|||||+|.+++........ +..+.......+.+. ....+.++||||... +
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~ 71 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--ATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------F 71 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--CccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------h
Confidence 3456899999999999999999999876532211 112222222233331 234789999999543 2
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCch-hhHHHHhcccCCchH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNE-KTLEDYLGLECPKPL 169 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~-~~l~~~l~~~~~~~l 169 (371)
.......+..+|++++|+|++++.+-.. ..++..+....+. ....|+++|+||+|...... .... ..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~---------~~ 142 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK---------SA 142 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH---------HH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH---------HH
Confidence 2233455678899999999985432222 2334444444321 12249999999999753310 0111 12
Q ss_pred HHHHH-hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 170 KEILQ-LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~-~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.. ..+..++. .|++++.|++++++.+...+.
T Consensus 143 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 143 QELAKSLGDIPLFL------TSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHTTSCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 33333 22333443 577788999999999886554
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-17 Score=140.61 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=99.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+..+|+|+|++|+|||||+|.|++........ ...+.......+.+. ....+.|+||||.......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 45799999999999999999999876532211 222222222233331 2347899999996542211
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|..... .... ....+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~---------~~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VDRN---------EGLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SCHH---------HHHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cCHH---------HHHHHHHH
Confidence 2233567899999999984422221 122223322211 1235999999999975321 1111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+..++. .|++++.|+.+|++.+...+....
T Consensus 150 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 150 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCEEEE------ecCCCCCCHHHHHHHHHHHHHhhh
Confidence 4444443 577788999999999998776543
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=142.32 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++....... ..|.......+.. .+..+.||||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHH
Confidence 4579999999999999999999977653221 1222233333444 677899999999532 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+..+|++|+|+|++++-+-. ....++...... ....|+++|+||+|.... ....++... +. ...
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~~ 153 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN--LSA 153 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-----hC--hhh
Confidence 34456789999999998542222 222333333221 122499999999998754 222221111 00 000
Q ss_pred cC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ..+.. ...||+++.|+.+|++.+...+..
T Consensus 154 ~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 154 IQDREICC----YSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCSSCEEE----EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred hccCCeeE----EEEECCCCCCHHHHHHHHHHHHHh
Confidence 11 11111 236888899999999998876543
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-17 Score=138.24 Aligned_cols=161 Identities=18% Similarity=0.163 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|++|+|||||+|+|++....... .+++.......... ++. .+.++||||.......
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 68 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM---------- 68 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH----------
Confidence 3479999999999999999999987653221 12222222222333 444 4778999996653221
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|..... ...+ ....+..
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~-~~~~---------~~~~~~~ 136 (189)
T 4dsu_A 69 -RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT-VDTK---------QAQDLAR 136 (189)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS-SCHH---------HHHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc-cCHH---------HHHHHHH
Confidence 1122334699999999984322222 233444444332 1234999999999987431 1111 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.++.+++. .||+++.|+.+|++.+...+..
T Consensus 137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 45555554 5777889999999998877654
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=154.17 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+.+|+|+|++|+|||||+|+|+|...... ....++|.......+.+ ++..+.||||||+.++.. ...........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-s~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~---~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIV-SHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGE---EIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchh---HHHHHHHHHHH
Confidence 46899999999999999999999864211 11234454444445555 788999999999876321 11111123334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
..+..+|++|+|+|++++.+.........+...+. ..|+++|+||+|.... ..... ..+......
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~--~~~~~----------~~l~~~~~~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAAN--ADALI----------RAIADGTGT 372 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTT--THHHH----------HHHHHHHTS
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCc--cchhH----------HHHHhcCCC
Confidence 56778999999999997776632212222222233 2499999999998765 22211 111111012
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.++ ..||+++.|+++|++.+...+.
T Consensus 373 ~~i------~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVI------GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceE------EEEECCCCCHHHHHHHHHHHHh
Confidence 233 3688899999999999998887
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.5e-17 Score=139.66 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+|+|.+|+|||||+|.+++........ .|....+. .... ++. .+.++||||.... .
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~----~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 85 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV----PTVFENFSHVMKY-KNEEFILHLWDTAGQEEY-----------D 85 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------T
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccC----CeeeeeeEEEEEE-CCEEEEEEEEECCCcHHH-----------H
Confidence 45799999999999999999999877522211 12212221 2222 443 5699999995432 2
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....++.++|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|...+..... .......+
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~-------~~~~~~~~ 155 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDV-------TKQEGDDL 155 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCC-------CHHHHHHH
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcc-------cHHHHHHH
Confidence 233456778999999999985433222 334455554433 2 39999999999874311100 01123445
Q ss_pred HHhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 173 LQLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 173 ~~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
....+.. ++. .||+++.|+.++++.+.+.+...
T Consensus 156 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 156 CQKLGCVAYIE------ASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHTCSCEEE------CBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHhcCCCEEEE------eecCCCCCHHHHHHHHHHHHHhc
Confidence 5545544 443 57888999999999998876654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=139.62 Aligned_cols=169 Identities=19% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||+|.+++....... .+++.......... ++. .+.|+||||.... ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY---TPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDY-----------DR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC---CCccceeEEEEEEE-CCEEEEEEEEECCCchhh-----------hH
Confidence 4579999999999999999999987653221 11111111222233 333 6889999996532 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc-----ccCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG-----LECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~-----~~~~~~ 168 (371)
.....+.++|++++|+|++++.+-... .++..+....+ . .|+++|+||+|.... ....+.+. ......
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 233446688999999999854322221 34445554432 2 399999999998765 32222211 001112
Q ss_pred HHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 169 LKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 169 l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+...++. .++. .||+++.|+.+|++.+...+....
T Consensus 173 ~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 173 GQEMARSVGAVAYLE------CSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCEEEE------ecCCCCCCHHHHHHHHHHHHHHhh
Confidence 3445555554 3443 677888999999999987776544
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=158.14 Aligned_cols=176 Identities=16% Similarity=0.242 Sum_probs=115.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc----hHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE----SEYVSKE 92 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~----~~~~~~e 92 (371)
....+|+++|.+|+|||||+|+++|...+.... ..++|.......+.+ ++..+.||||||+.+.... .......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 356899999999999999999999886432221 233344333334444 7779999999998653211 1111111
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.. .++..+|++|+|+|++.+++..+..++..+... + .|+++|+||+|.........+++... +...
T Consensus 271 ~~----~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 336 (456)
T 4dcu_A 271 AL----KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDH 336 (456)
T ss_dssp HH----HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHH
T ss_pred HH----HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCchHHHHHHHHH-----HHHh
Confidence 11 233456999999999988998888888777652 2 49999999999886533344443332 3333
Q ss_pred HHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCC
Q 040649 173 LQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQ 214 (371)
Q Consensus 173 ~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~ 214 (371)
+...+ .+++ ..||+++.|+.+|++.+...+......
T Consensus 337 ~~~~~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 337 FQFLDYAPIL------FMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CGGGTTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred cccCCCCCEE------EEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 33222 2333 368889999999999999888776543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=137.85 Aligned_cols=165 Identities=15% Similarity=0.068 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ +++.......+.+ ++ ..+.++||||..... .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-----------~ 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------R 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC---CSSCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CcccceeEEEEEE-CCEEEEEEEEECCCCcchh-----------H
Confidence 45799999999999999999999875422111 1111111122233 33 478899999976532 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~~ 168 (371)
.....+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|.... ......+.. .....
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHHH
Confidence 23345678899999999985432222 235555655433 2 499999999998765 222111110 00112
Q ss_pred HHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 169 LKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 169 l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+....+. .++. .|++++.|+.+|++.+...+
T Consensus 157 ~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 157 GQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 3334444443 3333 67788899999999987654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=133.60 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|++|+|||||+|.+++...... . .+++.......+.+ ++ ..+.++||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC-C--CCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 347999999999999999999998764222 1 11111111222233 33 37889999996542 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-. ...++..+...... ...|+++|+||+|.........+ ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH---------HHHHHHH
Confidence 1222334569999999998433222 13344445444331 12499999999997643111121 1333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .|++++.|+.++++.+.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVNYVE------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------eCCCCCCCHHHHHHHHHHHHH
Confidence 44544444 577788999999999887654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-17 Score=141.63 Aligned_cols=165 Identities=16% Similarity=0.058 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+|+|.+|+|||||++.+++....... .+.+.......... ++. .+.++||||.... .
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------D 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C---CCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGG-----------T
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc---CCeecceeEEEEEE-CCEEEEEEEEECCCchhh-----------H
Confidence 35689999999999999999999976543221 12222222222233 444 4559999997432 2
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCc
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPK 167 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~ 167 (371)
.....++..+|++++|+|++++.+-... .++..+....+ . .|+++|+||+|.... ....+.+.. ....
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence 2334467789999999999854333332 34555555432 2 499999999998765 222211110 0011
Q ss_pred hHHHHHHhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 168 PLKEILQLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 168 ~l~~~~~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
....+....+.. ++ ..||+++.|+.+|++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcEEE------EeeCCCCCCHHHHHHHHHHH
Confidence 223344444432 33 36788899999999988754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=157.26 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|.|+|...... ...+++|.........+ .+..+.||||||+.... .......+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 4799999999999999999999874211 22356666666666666 78899999999987531 11112334445556
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN- 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~- 178 (371)
++..+|++|+|+|++.+++..+..+..+++.. + .|+++|+||+|.... ..... ...+. .++.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~~ 140 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE----FEREV-------KPELY-SLGFG 140 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSSC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCCC
Confidence 67889999999999988888887777777653 2 399999999996421 01111 01221 2222
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+ ...||+++.|+.+|++.+...++.
T Consensus 141 ~~------~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 EP------IPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SC------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CE------EEEeccCCCCHHHHHHHHHHhccc
Confidence 22 336888999999999999887764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-17 Score=158.37 Aligned_cols=175 Identities=16% Similarity=0.205 Sum_probs=110.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch---HHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES---EYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~ei~ 94 (371)
...+|+++|++|+|||||+|+|+|....... ...++|.......+.+ ++..+.||||||+.+..... +... ..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~--~~ 249 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYS--VL 249 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHH--HH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHH--HH
Confidence 4579999999999999999999998753221 1234454444444555 77889999999986533211 1111 01
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
. ...++..+|++|+|+|++++.+..+..++..+... . .|+++|+||+|.........+++... +...+.
T Consensus 250 ~-~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~ 318 (436)
T 2hjg_A 250 R-ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 318 (436)
T ss_dssp H-HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCG
T ss_pred H-HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc---C--CcEEEEEECccCCCcchHHHHHHHHH-----HHHhcc
Confidence 1 11233456999999999988888887766666532 2 49999999999876532233333222 222322
Q ss_pred hc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.. +.+++ ..||+++.|+.+|++.+...+.....
T Consensus 319 ~~~~~~~~------~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 319 FLDYAPIL------FMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp GGTTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred cCCCCCEE------EEecccCCCHHHHHHHHHHHHHHhhc
Confidence 22 22333 36888999999999999988876543
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=135.70 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... .. +.+.......... ++ ..+.++||||.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 70 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS-YD--PTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIF---------- 70 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSC-CC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-CC--CCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHH----------
Confidence 357999999999999999999996654222 11 1111111222233 44 36789999997654221
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++-+-.. ..++..+...+.. ...|+++|+||+|.........+ ....+..
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (181)
T 3t5g_A 71 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE---------EGKALAE 139 (181)
T ss_dssp -CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH---------HHHHHHH
Confidence 2334667899999999984322221 2233334333321 12499999999997644212221 1344555
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
..+..++. .||+++.|+.+++..+...+....+
T Consensus 140 ~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 140 SWNAAFLE------SSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HTTCEEEE------CCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred HhCCcEEE------EecCCCCCHHHHHHHHHHHHHHhcC
Confidence 55555444 5777889999999999887766544
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=138.28 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=101.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC------CccceeEEEEeE---Ee-eCCcEEEEEeCCCCCCCCcch
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS------SAITKTCEMKTT---VL-KDGQVVNVIDTPGLFDSSAES 86 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~i~liDTPG~~~~~~~~ 86 (371)
....+|+|+|.+|+|||||+|.+.|.......... ...|........ .. .....+.++||||.....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 34589999999999999999999876542211100 111222222211 11 122368999999976531
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 87 EYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 87 ~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
.....++..+|++|+|+|++.+.+......+..+...+. .....|+++|+||+|.... ...+
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~---- 154 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVE---- 154 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHH----
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHH----
Confidence 122335678899999999985444444444444433221 1123499999999997654 2222
Q ss_pred ccCCchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 163 LECPKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++...+. .++. .||+++.|+.++++.+...+..
T Consensus 155 -----~~~~~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 155 -----MVRAVVDPEGKFPVLE------AVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -----HHHHHHCTTCCSCEEE------CBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCCceEEE------EecCCCcCHHHHHHHHHHHHHH
Confidence 13344444444 3333 6788899999999998876543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-17 Score=149.50 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=108.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCC-CCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~-~~~~~~~~~~~ei~~~~ 97 (371)
...|+|+|++|+|||||+|+|+|....... ...++|.......+.. ++..+.++||||+. .. .......+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 358999999999999999999998753221 1122333222222333 67789999999986 21 112222333334
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++++|+|++. ++..+..+++.+.. ...|+++|+||+|.... ...+.+. +..+...++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~-~~~~~~~--------l~~l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE-KADLLPH--------LQFLASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC-HHHHHHH--------HHHHHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCcc-HHHHHHH--------HHHHHHhcC
Confidence 556778999999999986 88888766665542 12499999999998752 1222222 233333333
Q ss_pred C-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 N-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. .++ ..|++++.++.+|++.+...++.
T Consensus 148 ~~~~i------~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 148 FLDIV------PISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CSEEE------ECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cCceE------EEECCCCCCHHHHHHHHHHhCCc
Confidence 2 223 36778889999999999887765
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=138.56 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH-
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA- 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~- 94 (371)
...+|+|+|.+|+|||||+|.+++........ ...+.......+.+ ++ ..+.++||||... +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 45799999999999999999999776533221 22222222333333 33 4789999999432 11
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++|+|+|++++.+-.. ..++..+...+. ....|+++|+||+|.........+ ....+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~---------~~~~~~ 154 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD---------LAQKFA 154 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH---------HHHHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH---------HHHHHH
Confidence 222334567899999999984322222 334445554431 122499999999997543111111 123344
Q ss_pred HhcCCceEeecCcchhhHhhH---HhHHHHHHHHHHHHh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRT---EQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~---~~i~~Ll~~i~~~~~ 209 (371)
...+..++. .|++++ .++.+++..+.+.+.
T Consensus 155 ~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 155 DTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHTTCCEEE------CCSSSGGGGSCHHHHHHHHC----
T ss_pred HHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHHh
Confidence 444555554 456667 889999988866543
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-17 Score=136.48 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...+.......... ++ ..+.++||||.......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI---------- 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHH----------
Confidence 34799999999999999999999876532211 11122222223333 33 47899999995432111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|.........+ .+..+..
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1z2a_A 71 -TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNE---------EAEGLAK 137 (168)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHH---------HHHHHHH
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHH---------HHHHHHH
Confidence 2233557899999999985332221 234444444432 2 399999999997643111111 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .|++++.|+.++++.+.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 138 RLKLRFYR------TSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHHh
Confidence 44544444 577788999999999876553
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=7.2e-17 Score=135.72 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|+|||||+|.+++...... ..|.......+.. .+..+.++||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 3799999999999999999987664321 1122222333444 667899999999753 1223334
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+.++|++++|+|++++-+-. ....++...... ....|+++|+||+|.... ....+.... +. ...+.
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--ccccc
Confidence 567889999999998542222 222333333321 112499999999998654 222221111 00 00111
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+. ....||+++.|+.++++.+...+.
T Consensus 133 ~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 133 HRNWY---IQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp SCCEE---EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CccEE---EEEcccCCCcCHHHHHHHHHHHHh
Confidence 11111 123678889999999999887654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=138.38 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE--EEeEEeeC-----------CcEEEEEeCCCCCCCCcc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~i~liDTPG~~~~~~~ 85 (371)
..+|+|+|.+|+|||||+|+|++...... ...|.... ...+.+.. ...+.||||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 47899999999999999999998765221 11122211 22222211 3578999999932
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGL 163 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~ 163 (371)
.+.......+..+|++|+|+|++++.+. .....++..+.... ...|+++|+||+|..........
T Consensus 96 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~----- 162 (217)
T 2f7s_A 96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER----- 162 (217)
T ss_dssp ------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-----
T ss_pred ------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH-----
Confidence 1233344556788999999999843221 22223333332211 23599999999997643111111
Q ss_pred cCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 164 ECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 164 ~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..+....+..++. .|++++.++.+|++.+...+.
T Consensus 163 ----~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 ----QARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp ----HHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 134445555555554 567788999999999876554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=163.44 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+|+|++|+|||||+|+|+|...... ....++|.........+ .+..+.||||||+.... ......+....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHH
Confidence 357899999999999999999999765322 23356666666655555 67899999999987432 22344455556
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|+..+++..+..+...+.. ...|+++|+||+|..... ....++. ..--
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~-~~~~e~~------------~lg~ 158 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDFY------------SLGF 158 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----------CCSG------------GGSS
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhhh-hhHHHHH------------HcCC
Confidence 666677899999999998899988887777764 234999999999976331 1111111 1001
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..++ ..||+++.|+.+|++.+...+..
T Consensus 159 ~~~~------~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 159 GEPY------PISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SSEE------ECCTTTCTTHHHHHHHHHTTGGG
T ss_pred CceE------EeecccccchHHHHHHHHhhccc
Confidence 1222 36788899999999998876653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=131.76 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=92.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|++|+|||||+|.++|....... ...+.+. ....+.+ ++. .+.++||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDV--YERTLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSE--EEEEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Cccccce--eEEEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 3579999999999999999999988753321 1222222 2222333 333 68899999975420 111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|.........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence 12334567899999999984332221 223333433211 1124999999999987542112211 222333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.+|++.+.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 140 VFDCKFIE------TSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHTSEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 33434443 677888999999999886654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=135.79 Aligned_cols=163 Identities=18% Similarity=0.123 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+|+|.+|+|||||+|.+++...... . .+++.......+.+ ++ ..+.||||||.....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 76 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----------- 76 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCC-C--CCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH-----------
Confidence 3458999999999999999999998764222 1 11111111222333 44 378899999976531
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|.........++ +..+.
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 146 (206)
T 2bov_A 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 146 (206)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHHH
Confidence 111222345699999999984322111 233444444432 1124999999999976432122221 33344
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+..++. .|++++.|+.+|+..+...+..
T Consensus 147 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 147 EQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444544444 5677889999999998876643
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=131.44 Aligned_cols=165 Identities=17% Similarity=0.139 Sum_probs=98.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+.....+|+|+|.+|+|||||+|++++....... .+++.........+ ++ ..+.++||||........
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY---DPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc---CCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH------
Confidence 3445689999999999999999999987542221 11111111122333 43 368899999976543221
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHh-CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLF-GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~-~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
.. .+..+|++++|+|++++.+-.. ..++..+.... ... .|+++|+||+|.......... ...
T Consensus 75 -~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~---------~~~ 138 (181)
T 2fn4_A 75 -EQ----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQRQVPRS---------EAS 138 (181)
T ss_dssp -HH----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGGCCSCHH---------HHH
T ss_pred -HH----HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccCHH---------HHH
Confidence 11 2234699999999984322111 22333332222 223 499999999997643111111 123
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+....+..++. .|++++.|+.+|++.+...+...
T Consensus 139 ~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 139 AFGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEE------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 333444444444 57778899999999998776543
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-17 Score=141.87 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC--CccccCCCCCccce--eEEEEeEEeeC---CcEEEEEeCCCCCCCCcchHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR--RAFKASAGSSAITK--TCEMKTTVLKD---GQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~--~~~~~~~~~~~~t~--~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
...+|+|+|++|+|||||+|++++. ..... ...|. ......+.+.+ ...+.|+||||...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------- 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL--------- 85 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHH---------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEEEEEEECCcccEEEEEEEECCCcHH---------
Confidence 4579999999999999999999987 33211 11122 12223333412 34789999999632
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCC-CCCCeEEEEEeCCCCCC-CchhhHHHHhcccCCc
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGK-KIFDYMIVVFTGGDDLE-DNEKTLEDYLGLECPK 167 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~-~~~~~l~~~l~~~~~~ 167 (371)
+.......+..+|++|+|+|++++.+-. ...++..+....+. ....|+++|+||+|... ......+
T Consensus 86 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~--------- 154 (208)
T 2yc2_C 86 --YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD--------- 154 (208)
T ss_dssp --HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH---------
T ss_pred --HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH---------
Confidence 3344556678899999999998543322 23444555554330 01249999999999875 2111111
Q ss_pred hHHHHHHhcCCceEeecCcchhhHhh-HHhHHHHHHHHHHHHh
Q 040649 168 PLKEILQLCDNRWVLFDNKTKYEAKR-TEQVQQLLSLVNAVNV 209 (371)
Q Consensus 168 ~l~~~~~~~~~r~~~f~~~~~~sa~~-~~~i~~Ll~~i~~~~~ 209 (371)
.+..+....+..++. .|+++ +.|+.++++.+...+.
T Consensus 155 ~~~~~~~~~~~~~~~------~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 MAQDWATTNTLDFFD------VSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHHTTCEEEE------CCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEE------eccCCCCcCHHHHHHHHHHHHH
Confidence 234455555544444 56777 8999999998876554
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-17 Score=139.04 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++....... . |.......+.+ ++..+.++||||...... ..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIGGQESLRS-----------SW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-C----CSCSSCEEEEE-TTEEEEEEECCC----CG-----------GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc-C----CCccceEEEEE-CCEEEEEEECCCCHhHHH-----------HH
Confidence 4589999999999999999999977653221 1 11122223344 678899999999754221 12
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|++++-+-.. ...++...... ....|+++|+||+|.... ...++. ...+..
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i---------~~~~~~ 144 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEI---------SQFLKL 144 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHH---------HHHHTG
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHH---------HHHhCh
Confidence 234567899999999986533222 12233332221 122499999999998754 222211 111211
Q ss_pred --cC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 --CD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 --~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. ..+.. ...||+++.|+++|++.+.+.+...
T Consensus 145 ~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 145 TSIKDHQWHI----QACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp GGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred hhhcCCCcEE----EEccCCCCcCHHHHHHHHHHHHHHH
Confidence 11 11111 2368888999999999998877654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=137.07 Aligned_cols=166 Identities=19% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|+|++...........+.+. ...... .....+.++||||..... .
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 71 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISCDKSVCTLQITDTTGSHQFP-----------A 71 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEETTEEEEEEEEECCGGGSCH-----------H
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEECCEEEEEEEEeCCChHHhH-----------H
Confidence 3458999999999999999999998665322111111111 111222 122378999999965421 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....+.....|+++|+||+|..... ..... ...+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~ 141 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVAQ 141 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHHH
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHHH
Confidence 11222345699999999984322222 23445555544321224999999999976431 11111 223334
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
..+..++. .||+++.|+.+|++.+...+....
T Consensus 142 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 142 EWKCAFME------TSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred HhCCeEEE------EecCCCCCHHHHHHHHHHHHhhhh
Confidence 44444443 577788999999999988776543
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=141.60 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++....... ...+.+ ...+.+ ++..+.++||||.... ....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN----VEEIVI-NNTRFLMWDIGGQESL-----------RSSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSSSS----CEEEEE-TTEEEEEEEESSSGGG-----------TCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCcee----eEEEEE-CCEEEEEEECCCCHhH-----------HHHH
Confidence 4689999999999999999999988752111 111211 223344 6788999999997532 1123
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...+..+|++++|+|++++.+-.. ...++...... ....|+++|+||+|..... ...+.+++.. .
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~----------~ 150 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL----------T 150 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG----------G
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCc----------c
Confidence 445678899999999986543322 22233332221 1224999999999987541 1112221110 0
Q ss_pred hcC-CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 175 LCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 175 ~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
... ..+.. ...||+++.|+.+|++.+.+
T Consensus 151 ~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 151 SIKDHQWHI----QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GCCSSCEEE----EECBTTTTBTHHHHHHHHHT
T ss_pred cccCCceEE----EEccCCCCcCHHHHHHHHHh
Confidence 011 11111 23678889999999998754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-16 Score=133.06 Aligned_cols=166 Identities=14% Similarity=0.176 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|++|+|||||+|+|+|...+... .+++|.......+.+ ++..+.++||||......... ...+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 3479999999999999999999997654332 233444444444555 678899999999876532210 11111111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
. ....+|++++|+|.++ + .... .++....... .|+++|+||+|.... .. .......+...++
T Consensus 81 ~-~~~~~~~~i~v~d~~~-~-~~~~---~~~~~~~~~~--~piilv~nK~Dl~~~--~~--------~~~~~~~~~~~~~ 142 (188)
T 2wjg_A 81 I-INEKPDLVVNIVDATA-L-ERNL---YLTLQLMEMG--ANLLLALNKMDLAKS--LG--------IEIDVDKLEKILG 142 (188)
T ss_dssp H-HHHCCSEEEEEEEGGG-H-HHHH---HHHHHHHTTT--CCEEEEEECHHHHHH--TT--------CCCCHHHHHHHHT
T ss_pred H-hccCCCEEEEEecchh-H-HHHH---HHHHHHHhcC--CCEEEEEEhhhcccc--cc--------chHHHHHHHHHhC
Confidence 1 1124799999999873 2 1122 2333322222 499999999996422 10 1112445555555
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+++. .|++++.++.+|++.+...+....
T Consensus 143 ~~~~~------~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 143 VKVVP------LSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CCeEE------EEecCCCCHHHHHHHHHHHHHhcc
Confidence 55554 577888999999999998887654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=138.93 Aligned_cols=174 Identities=12% Similarity=0.081 Sum_probs=95.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.+.....+|+|+|.+|+|||||+|.++|......... ...+.......+.......+.+|||||........ +.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~~-- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT---FD-- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGG-CCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT---CC--
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceee-eccccceeeeeccCCCeeEEEEEECCCCHHHHhhh---hh--
Confidence 3444678999999999999999999998644221111 11111111111111234589999999976532210 00
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHH--HHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLE--DYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~--~~l~~~~~~~l~~ 171 (371)
...++.++|++|+|+|+++++......+..++..........|+++|+||+|+..+. .... ..+.. .....
T Consensus 89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~v~~---~~~~~ 161 (196)
T 3llu_A 89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDD-HKIETQRDIHQ---RANDD 161 (196)
T ss_dssp ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH-HHHHHHHHHHH---HHHHH
T ss_pred ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchh-hhhHHHhHHHH---HHHHH
Confidence 012344679999999999764444455555665542111124999999999987541 1111 11110 01222
Q ss_pred HHH----hcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 172 ILQ----LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 172 ~~~----~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.. ..+..++ ..||++ .|+.+++..+...
T Consensus 162 ~~~~~~~~~~~~~~------e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 162 LADAGLEKLHLSFY------LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHTTCTTSCEEEE------EECTTS-THHHHHHHHHHHH
T ss_pred HHHhhhhcCCcceE------EEEech-hhHHHHHHHHHHH
Confidence 333 1222222 368888 9999999887654
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=136.45 Aligned_cols=166 Identities=17% Similarity=0.069 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC---cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
....+|+|+|++|+|||||+|.+++........ +.++.......+.+ ++ ..+.++||||.......
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~-------- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM-------- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT--------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccch--------
Confidence 345899999999999999999999876432111 11111222333344 33 57899999997653221
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC-CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK-IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
....+..+|++++|+|++++.+-.. ..++..+....... ...|+++|+||+|.........+ ....
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~---------~~~~ 140 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE---------KHLR 140 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH---------HHHH
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH---------HHHH
Confidence 1223567899999999985433222 23444444432110 11248999999997643111111 1233
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+....+..++. .||+++.|+.++++.+...+...
T Consensus 141 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 141 FCQENGFSSHF------VSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 44444444443 57778899999999998776543
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=130.34 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||+|.+++....... .+.+.......... ++ ..+.++||||...... ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~----~~------- 68 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA----MR------- 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH----HH-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCCchhhhH----HH-------
Confidence 68999999999999999999987643221 11111111222223 33 3578999999765321 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|..... .... ....+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~-~~~~---------~~~~~~~~~ 137 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAART-VESR---------QAQDLARSY 137 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SCHH---------HHHHHHHHH
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcc-cCHH---------HHHHHHHHc
Confidence 112234699999999984322221 3344444444331 124999999999977531 1111 133344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++. .|++++.|+.++++.+...+.
T Consensus 138 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 138 GIPYIE------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCCEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 555554 567788999999999987664
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=138.27 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=99.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|.|++...... .....+.......+.+ ++ ..+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 4568999999999999999999998775322 1222233333333333 33 478999999964321
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
......+..+|++|+|+|++++.+-.. ..++..+....... ...|+++|+||+|..... ...+. +..
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHH---------HHH
Confidence 112345678899999999985432222 23344444443210 124999999999987331 11111 222
Q ss_pred HHH-hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 172 ILQ-LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 172 ~~~-~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.. ..+..++. .||+++.|+.+|++.+...+..
T Consensus 142 ~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 142 WCYSKNNIPYFE------TSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHHHTTSCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 332 22333333 6778889999999998876653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=135.29 Aligned_cols=166 Identities=15% Similarity=0.035 Sum_probs=101.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|.+++...........+ ......... ++. .+.++||||.... ...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 69 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 69 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc---ceeEEEEEE-CCEEEEEEEEECCCCHhH-----------HHH
Confidence 47999999999999999999997654322111111 111112222 333 5679999997542 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~~l 169 (371)
....+..+|++++|+|++++.+-... .++..+....+ ..|+++|+||+|.... ....+.+.. ......
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHHH
Confidence 33456788999999999854333222 35555655443 2499999999998754 222211110 011123
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+. +++. .||+++.|+.+|++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCcEEEE------ecCCCccCHHHHHHHHHHHHhc
Confidence 334444443 3333 6778889999999999887754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=134.75 Aligned_cols=166 Identities=22% Similarity=0.170 Sum_probs=98.4
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~ 90 (371)
++...+..+|+|+|++|+|||||+|++++........ +...... ...... ++. .+.++||||.......
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----- 82 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD--PTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAM----- 82 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--TTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSS-----
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHH-----
Confidence 3445567899999999999999999999765432211 1111111 222233 444 4667999996543221
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL 169 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l 169 (371)
. ..++..+|++++|+|++++.+-.. ..++..+...... ...|+++|+||+|.........+ ..
T Consensus 83 --~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~---------~~ 146 (183)
T 3kkq_A 83 --R----EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD---------QG 146 (183)
T ss_dssp --H----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH---------HH
T ss_pred --H----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH---------HH
Confidence 1 122334699999999985322211 2333444333221 22499999999997653212221 13
Q ss_pred HHHHHhcCCceEeecCcchhhHh-hHHhHHHHHHHHHHHHh
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAK-RTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~-~~~~i~~Ll~~i~~~~~ 209 (371)
..+...++..++. .|++ ++.|+.++++.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 147 KEMATKYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEE------eccCCCCCCHHHHHHHHHHHHh
Confidence 4455555655555 4666 67899999999887664
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-17 Score=144.39 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=102.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|.+|+|||||+|+|+|...........+.+ ..........+ ..+.+|||||.......
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 77 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------- 77 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTSCEEEEEEEEECSGGGTSCC---------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCCcEEEEEEEecCCchhhchH---------
Confidence 345899999999999999999999876532211111111 11111222122 46899999996543221
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
....+..+|++|+|+|++++.+..+ ..++..+....+.. .|+++|+||+|.......... ....+.
T Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 144 (218)
T 4djt_A 78 --KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKK---------LVMEVL 144 (218)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHH---------HHHHHT
T ss_pred --HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHH
Confidence 1223556899999999985443332 34455666555544 399999999997643111111 122333
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCC
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQ 214 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~ 214 (371)
...+..++. .||+++.|+.++++.+...+......
T Consensus 145 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 145 KGKNYEYFE------ISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TTCCCEEEE------EBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHcCCcEEE------EecCCCCCHHHHHHHHHHHHhccccc
Confidence 333434443 57788899999999999888776553
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=132.63 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+++|.+|+|||||+|++++....... .+++........... ....+.++||||...... ..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~------- 68 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MR------- 68 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC---CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HH-------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HH-------
Confidence 378999999999999999999986542221 111111111222221 234688999999765321 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++.+-.. ..++..+...... ...|+++|+||+|.........+ ....+....
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 138 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE---------QGQNLARQW 138 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHH---------HHHHHHHHc
Confidence 112234699999999985322222 2344444443321 22499999999997643111111 123344433
Q ss_pred -CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 -DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 -~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+..++. .||+++.|+++|++.+.+.+
T Consensus 139 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 139 CNCAFLE------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEE------ecCCCCCCHHHHHHHHHHHH
Confidence 333333 67788899999999987655
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-16 Score=137.87 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... . .+++ .....+.+.. +..+.||||||... ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~-~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~--- 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT-Q--TSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQ--- 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB-C--CCCS--CEEEEEECSSTTCCEEEEEECCCCHH-------HHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-c--CCcc--eeeEEEEecCCCccEEEEEECCCChh-------HHHH---
Confidence 457999999999999999999998764322 1 1112 2222344422 56899999999642 1111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh----CCCCCCeEEEEEeCCCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF----GKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ilv~tk~D~~~~ 152 (371)
....++.++|++|+|+|+++ +..........+...+ ......|+++|+||+|....
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 22334667899999999983 3222333333333321 11222499999999998755
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-16 Score=132.61 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|.+|+|||||+|.|++....... .+.+.......+.. ++ ..+.||||||.... ..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HH
Confidence 4579999999999999999999987643221 11121121222333 33 35889999996432 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.+ ..++..+...... ...|+++|+||+|..... ...+ .+..+..
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~~-~~~~---------~~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTRT-VDTK---------QAHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SCHH---------HHHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCccc-CCHH---------HHHHHHH
Confidence 23345678899999999985432222 2334444444321 124999999999976531 1111 1333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..+.+++. .|++++.|+.++++.+...+...
T Consensus 154 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 154 SYGIPFIE------TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 44544444 57778899999999998776654
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=142.31 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|.|+|...+... .+++|.......+.. +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 368999999999999999999998754332 234554333322221 66799999999886543221 111222111
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....+|++++|+|+++ + .....+...+.+ . . .|+++|+||+|..... . .......+....+.
T Consensus 77 -~~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~--~--~p~ilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 -LSQRADSILNVVDATN-L-ERNLYLTTQLIE-T--G--IPVTIALNMIDVLDGQ--G--------KKINVDKLSYHLGV 138 (272)
T ss_dssp -HTTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-T--C--SCEEEEEECHHHHHHT--T--------CCCCHHHHHHHHTS
T ss_pred -hcCCCCEEEEEecCCc-h-HhHHHHHHHHHh-c--C--CCEEEEEEChhhCCcC--C--------cHHHHHHHHHHcCC
Confidence 1246899999999983 2 122223333333 1 2 3999999999965221 0 11123444444455
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++++ .||+++.|+++|++.+...+..
T Consensus 139 ~vi~------~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 139 PVVA------TSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHSCTT
T ss_pred CEEE------EEccCCCCHHHHHHHHHHHHhh
Confidence 5554 6788899999999999887654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=135.35 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHH
Q 040649 11 KPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 11 ~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~ 88 (371)
+.+.+.....+|+|+|.+|+|||||+|.++|......... .++.......+.+ ++. .+.++||||.... ...
T Consensus 15 ~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~---~~~ 88 (195)
T 3cbq_A 15 YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEP--ENPEDTYERRIMV-DKEEVTLVVYDIWEQGDA---GGW 88 (195)
T ss_dssp -------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTT--TSCTTEEEEEEEE-TTEEEEEEEECCCCCSGG---GHH
T ss_pred cCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCC--CcccceEEEEEEE-CCEEEEEEEEecCCCccc---hhh
Confidence 3444555678999999999999999999987543212111 1122222222333 443 5778999997542 111
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCc
Q 040649 89 VSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPK 167 (371)
Q Consensus 89 ~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~ 167 (371)
+. ..++..+|++|+|+|++++.+-. ...++..+....+. ...|+++|+||+|+........++
T Consensus 89 ----~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~-------- 152 (195)
T 3cbq_A 89 ----LR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE-------- 152 (195)
T ss_dssp ----HH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHH--------
T ss_pred ----hH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHH--------
Confidence 11 12234569999999998432211 12334444433221 124999999999986442122221
Q ss_pred hHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 168 PLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 168 ~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+....+.+++. .||+++.++.++++.+...+....
T Consensus 153 -~~~~a~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 153 -GRHLAGTLSCKHIE------TSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp -HHHHHHHTTCEEEE------EBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHhCCEEEE------EcCCCCCCHHHHHHHHHHHHHHhc
Confidence 23344444444433 577888999999999987766543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.9e-16 Score=144.06 Aligned_cols=177 Identities=12% Similarity=0.125 Sum_probs=100.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC--CCccc--eeEEE---------------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG--SSAIT--KTCEM--------------------------------- 60 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--~~~~t--~~~~~--------------------------------- 60 (371)
..++|+|+|.+|+|||||+|+|+|...++.+.. +...+ .....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 447899999999999999999999886433211 00000 00000
Q ss_pred --------------------EeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhcCCceEEEEEEeC-CCCC
Q 040649 61 --------------------KTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAKDGIHAVLLVFSV-RSRF 117 (371)
Q Consensus 61 --------------------~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~~~~d~vl~v~d~-~~~~ 117 (371)
..+..+.+..+.||||||+...... .......+......++..+|++++|+|+ +.++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0011123467999999999753210 0112233444455556678999999987 4445
Q ss_pred CHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhh---
Q 040649 118 SQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKR--- 193 (371)
Q Consensus 118 ~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~--- 193 (371)
...+ ..++..+.. ...|+++|+||+|...... ...+++.. .+..++..++++.+ .|+.+
T Consensus 183 ~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~-~~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~~ 245 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGT-DAMEVLTG--------RVIPLTLGFIGVIN---RSQEDIIA 245 (315)
T ss_dssp TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSC-CCHHHHTT--------SSSCCTTCEEECCC---CCHHHHSS
T ss_pred hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcch-HHHHHHhC--------CCccCCCCeEEEec---CChhhhcc
Confidence 4333 244444331 2249999999999875521 11222211 00112234444444 34555
Q ss_pred HHhHHHHHHHHHHHHhhc
Q 040649 194 TEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 194 ~~~i~~Ll~~i~~~~~~~ 211 (371)
+.++.+|++.+...++..
T Consensus 246 ~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKNH 263 (315)
T ss_dssp SCCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 789999999999988864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-16 Score=134.93 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|++|+|||||+|.+++........ ..+ .....+.+ ++..+.++||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIG----FNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STT----CCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCc----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 345899999999999999999999766522211 111 22233344 678899999999765321 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ...++...... ....|+++|+||+|.... ....+. ...+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i---------~~~~~ 145 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEV---------SKELN 145 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHH---------HHHTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHH---------HHHhC
Confidence 2345678899999999985543222 22334443321 123599999999998654 222211 11111
Q ss_pred hc--CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LC--DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ....+. ....|++++.|+.++++.+.+.+..
T Consensus 146 ~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 146 LVELKDRSWS---IVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTTCCSSCEE---EEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred cccccCCceE---EEEccCCCCcCHHHHHHHHHHHHHh
Confidence 11 111111 1236888899999999999876653
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-16 Score=130.78 Aligned_cols=162 Identities=19% Similarity=0.094 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|++|+|||||+|++++........ ...+.......... ++ ..+.++||||....... ..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~~ 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------LQ 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------hh
Confidence 689999999999999999999765422211 12222222233333 33 46789999997643110 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++..+|++++|+|++++-+-.. ..++..+....+. ...|+++|+||+|.........+ ....+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE---------EGRHLAGTL 139 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH---------HHHHHHHHc
Confidence 112334699999999985322111 2333334333221 12499999999997633111111 133444545
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++. .||+++.|+.++++.+...+..
T Consensus 140 ~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHIE------TSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEE------ecCccCCCHHHHHHHHHHHHHh
Confidence 554443 5778889999999998876653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-16 Score=138.68 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||++.+++........ +.+........... ++ ..+.||||+|.... ..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~--~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~-----------~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF-----------RS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEEC-SSCEEEEEEECCSCTTTC-----------GG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcC--CccceEEEEEEEEe-cceEEEEEEEECCCchhh-----------hh
Confidence 34799999999999999999998665422211 11111122222223 33 36789999996543 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....++.++|++++|+|++++-+-.. ..++..+....+..+ |++||.||+|+......+.++ ...+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a~ 146 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAK 146 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHHH
Confidence 23345678899999999985433222 445566666666555 999999999976432122221 334445
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++ ..||+++.||++++..|...+..
T Consensus 147 ~~~~~~~------e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 147 ELNVMFI------ETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHHC--
T ss_pred HhCCeeE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence 5554443 36889999999999998766543
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-17 Score=138.81 Aligned_cols=164 Identities=15% Similarity=0.071 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+|+|++|+|||||+|++++........ |.......+.+ ++..+.++||||.......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 345899999999999999999998776532211 21122233444 6778999999997653221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++-+-.. ...++...+.. ....|+++|+||+|.... ....+.... +. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 151 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VS 151 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hh
Confidence 2334668899999999985543222 22333333321 113499999999998755 222221111 00 01
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+..+.+. ....||+++.|+.++++.+.+.+...
T Consensus 152 ~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 152 SIMNRTWT---IVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp GCCSSCEE---EEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred hccCCceE---EEEccCCCccCHHHHHHHHHHHHHhc
Confidence 11111111 12367888999999999998877654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-15 Score=143.20 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=107.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|.+|+|||||+|.|+|...... .....|.......... .+..+.++||||+.+.......... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHH
Confidence 3457999999999999999999999874222 1223344444443444 5678999999998764322111111 111
Q ss_pred HhhhcCCceEEEEEEeCCCCC--CHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRF--SQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~--~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
+......+|++|+|+|++++. +.. ...++..+...++ ..|+++|+||+|.... ..++. +...+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~---------~~~~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKR---------LEKFV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHH---------HHHHH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHH---------HHHHH
Confidence 222334679999999987432 433 3556666666554 2499999999997754 22322 22233
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+.+++. .||+++.|+++|++.+...+..
T Consensus 306 ~~~~~~~~~------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 306 KEKGLNPIK------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHTTCCCEE------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred HhcCCCeEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 334444443 6778899999999999877754
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=155.34 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=99.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+.+|+|+|++|+|||||+|+|+|...... ...+++|.......+.+ ++..+.+|||||+.++.. ...........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~---~ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSD---QVEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchh---HHHHHHHHHHh
Confidence 46899999999999999999998754222 11234444443334445 788999999999865321 11111122334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
..+..+|++|+|+|++++++..+..++..+.. .|+++|+||+|.... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~--------~~--~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY--------PE--NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC--------CT--TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH--------hc--cCC
Confidence 45678999999999998888777665555432 399999999998755 2111 1110 00 112
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.++ ..|++++.|+++|++.|.+.+...
T Consensus 359 ~~i------~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 QIV------HTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CEE------EEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred cEE------EEECCCCCCHHHHHHHHHHHHhcc
Confidence 222 368889999999999999887754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=138.86 Aligned_cols=163 Identities=18% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.|++........ ...+.......+.+ ++ ..+.||||||......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA----------- 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCccchhh-----------
Confidence 35799999999999999999999876532211 22222222233333 44 4789999999654321
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++.+.+-.. ..++..+....... .|+++|+||+|.......... ....+..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~---------~~~~~~~ 146 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTE---------ESKTFAQ 146 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHH---------HHHHHHH
Confidence 23345678899999999985433222 23444454443323 399999999997643111111 1233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..+..++. .||+++.|+.+|++.+...+...
T Consensus 147 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 147 ENQLLFTE------TSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HTTCEEEE------CCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 44444443 56778899999999998776643
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=137.28 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=93.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+|+|++|+|||||+|.+++...... ..|.......+.. .+..+.++||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999997764321 1122233333444 677899999999754321 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ...++....... ...|+++|+||+|.... ....++... +. ..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~ 158 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-----LG--LQ 158 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 1223456799999999985432221 223333332211 12499999999998654 222221111 00 00
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+....+.+ ...||+++.|+++|++.+...+.
T Consensus 159 ~~~~~~~~~---~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYV---QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEE---EECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEE---EECcCCCcCCHHHHHHHHHHHHh
Confidence 011111111 24688889999999999876653
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=137.00 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=99.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|++++....... .+.++... ...... ++ ..+.|+||||..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 89 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VPTVFENY-VADIEV-DGKQVELALWDTAGQEDYD-----------RL 89 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTCT-----------TT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CCcccceE-EEEEEE-CCEEEEEEEEECCCcHHHH-----------HH
Confidence 479999999999999999999987653221 11111111 112233 33 368899999976532 12
Q ss_pred HhhhcCCceEEEEEEeCCCCCC--HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc----C-CchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFS--QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE----C-PKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~----~-~~~l 169 (371)
....+..+|++++|+|++++.+ .....++..+....+ . .|+++|+||+|.... ....+.+... . ....
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHHH
Confidence 2345678899999999984322 222345555555432 2 399999999998755 2222222110 0 0112
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+. .++ ..||+++.|+++|++.|...+..
T Consensus 165 ~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 165 RAMAVRIQAYDYL------ECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCEEE------EeeCCCCCCHHHHHHHHHHHHHH
Confidence 333333333 333 35788899999999999876543
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=134.20 Aligned_cols=170 Identities=18% Similarity=0.140 Sum_probs=96.3
Q ss_pred CCCCCCCC-CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcc
Q 040649 9 DWKPTSSS-NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 9 ~~~~~~~~-~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~ 85 (371)
+|.+.+.. .+..+|+|+|.+|+|||||+|.+++........ +...... ...+.. ++ ..+.++||||... .
T Consensus 17 ~~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~-- 89 (196)
T 2atv_A 17 NLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--PTLESTY-RHQATI-DDEVVSMEILDTAGQED-T-- 89 (196)
T ss_dssp ----------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-C--
T ss_pred ccchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-c--
Confidence 45444433 456899999999999999999999876532211 1111111 122223 33 4689999999765 1
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE 164 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~ 164 (371)
.. ... .+..+|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|..........+
T Consensus 90 --~~---~~~----~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~----- 154 (196)
T 2atv_A 90 --IQ---REG----HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEE----- 154 (196)
T ss_dssp --HH---HHH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHH-----
T ss_pred --cc---hhh----hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHH-----
Confidence 11 112 2334599999999984332222 2334445443321 124999999999976431111111
Q ss_pred CCchHHHHHHhcCCceEeecCcchhhHhhHH-hHHHHHHHHHHHHhh
Q 040649 165 CPKPLKEILQLCDNRWVLFDNKTKYEAKRTE-QVQQLLSLVNAVNVK 210 (371)
Q Consensus 165 ~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~~ 210 (371)
...+....+..++. .|++++. |+.++++.+...+..
T Consensus 155 ----~~~~~~~~~~~~~~------~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 155 ----GEKLATELACAFYE------CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp ----HHHHHHHHTSEEEE------CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhCCeEEE------ECCCcCCcCHHHHHHHHHHHHHh
Confidence 22333334444443 5677888 999999998866543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=134.73 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=96.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|++|+|||||+|.+++...... ..|.......+.+ ++..+.++||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998754211 1111122233444 577899999999643 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++.++|++++|+|++++-+-.. ...++...+.. ....|+++|+||+|.... ...++.. ..+.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~---------~~~~ 143 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIA---------EGLN 143 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHH---------HHhC
Confidence 3345567899999999985433221 22233333221 122499999999998755 2222111 1111
Q ss_pred h--cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 L--CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~--~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. ...+.+. ....||+++.|+.++++.+...+.
T Consensus 144 ~~~~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 144 LHTIRDRVWQ---IQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHTC-
T ss_pred chhccCCceE---EEEccCCCCCCHHHHHHHHHHHHH
Confidence 0 1111111 123688899999999999876553
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=134.95 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|.+++........ +.+.... ...... .....+.|+||||.... ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 90 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV--PTVFENY-TACLETEEQRVELSLWDTSGSPYY-----------DN 90 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--CCSEEEE-EEEEEC--CEEEEEEEEECCSGGG-----------TT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC--CeeeeeE-EEEEEECCEEEEEEEEECCCCHhH-----------HH
Confidence 356899999999999999999999876532211 1111111 112222 12347889999996432 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l 169 (371)
....++.++|++|+|+|++++-+-.. ..++..+..... . .|+++|+||+|+..+. ........ .......
T Consensus 91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQG 166 (214)
T ss_dssp TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccch-hhhhhhcccccCccCHHHH
Confidence 23456778999999999985433332 345555655533 2 3999999999986431 01110000 0011123
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHh-HHHHHHHHHHHHhhc
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQ-VQQLLSLVNAVNVKN 211 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~~~~~ 211 (371)
..+....+. .++. .||+++.| +.+|++.+...+...
T Consensus 167 ~~~~~~~~~~~~~e------~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 167 CAIAKQLGAEIYLE------GSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCEEEE------eccCCCcccHHHHHHHHHHHHhcc
Confidence 445555554 4443 67788898 999999998776543
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=154.90 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|.|+|...... ....++|.........+ .+..+.||||||+...... ....+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence 5899999999999999999998765221 22345666655555555 6788999999998643211 33445555555
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
++..+|++|+|+|+..+++..+..+...+.. ...|+++|+||+|..... ... .. +. ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~--------~~----~~-~lg~- 138 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANI--------YD----FY-SLGF- 138 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CC--------CS----SG-GGSS-
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhH--------HH----HH-HcCC-
Confidence 6677899999999998888887766665542 224999999999976431 100 01 11 1121
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
......||+++.|+.+|++.+...++.
T Consensus 139 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 ----GEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ----CCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ----CCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 112346888999999999999988764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=149.32 Aligned_cols=178 Identities=18% Similarity=0.238 Sum_probs=105.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH-HH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA-KC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~-~~ 96 (371)
...+|+|+|++|+|||||+|+|+|...... ....++|.......+.+ ++..+.+|||||+.............+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 457999999999999999999999875222 11234444444444555 7888999999998532111000000000 00
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...++..+|++++|+|+..+.+..+..+...+.. .+ .|+++|+||+|.......+.+++... +...+..+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHHHhccC
Confidence 0112334699999999987788777655555543 22 49999999999876532223333221 22222222
Q ss_pred C-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 177 D-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 177 ~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+ .+++ ..||+++.|+.+|++.+...+.....
T Consensus 327 ~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 327 DYSPLI------FTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp TTSCEE------ECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred CCCcEE------EEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 2 2222 36888999999999999988877544
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=9.9e-17 Score=142.31 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=99.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.....+|+|+|.+|+|||||+|.+++...........+.+.......... .+..+.||||||.......
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~---------- 80 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGL---------- 80 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCC----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHH----------
Confidence 34558999999999999999999543322111111222332222222111 3357899999996543211
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|..... ... ....+..
T Consensus 81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~--~~~---------~~~~~~~ 145 (221)
T 3gj0_A 81 -RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDRK--VKA---------KSIVFHR 145 (221)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSCS--SCG---------GGCCHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCcccccc--ccH---------HHHHHHH
Confidence 1223457899999999985433222 234455555433 2 3999999999986541 111 1122333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
..+..++. .|++++.|+.+++..+...+....
T Consensus 146 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 146 KKNLQYYD------ISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHTCEEEE------CBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 34444443 578889999999999998776543
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-17 Score=144.41 Aligned_cols=162 Identities=19% Similarity=0.145 Sum_probs=92.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||+|+|++....... ....+.......+.+ ++ ..+.|+||||.......
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 98 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------- 98 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH----------
Confidence 4579999999999999999999987653221 112222333333444 44 46899999996543221
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++|+|+|++++.+-.. ..++..+...... ..|+++|+||+|........ ......+..
T Consensus 99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~v~---------~~~~~~~~~ 166 (199)
T 3l0i_B 99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVD---------YTTAKEFAD 166 (199)
T ss_dssp -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--CCCC---------SCC-CHHHH
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCccccCC---------HHHHHHHHH
Confidence 2334667899999999985433222 2233333322222 24999999999976441110 111233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++ ..|++++.|+.+|++.+.+.+..
T Consensus 167 ~~~~~~~------~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 167 SLGIPFL------ETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp TTTCCBC------CCCC---HHHHHHHHHHTTTTTT
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 4443333 36788899999999998765543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=150.45 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=107.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc---c--cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF---K--ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~---~--~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+..+|+++|++++|||||+|+|+|.... + ......++|....+..+.+ ++..+.+|||||+.+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~----------- 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD----------- 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH-----------
Confidence 3579999999999999999999987611 0 0111234555555555555 778999999999522
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+...+...+..+|++|+|+|++.+........+..+.. .+ .|.++|+||+|.... ..++..... +..+
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~~--~~~~~~~~~-----l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT--EEIKRTEMI-----MKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence 33334445677899999999997777777777766654 33 277999999998753 334433332 4555
Q ss_pred HHhc----CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLC----DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~----~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+... ..+++ ..||+++.|+.+|++.|...++
T Consensus 154 l~~~~~~~~~~ii------~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 154 LQSTHNLKNSSII------PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHSSSGGGCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhhhcccccceEE------EEECcCCCCHHHHHHHHHHhhc
Confidence 5443 22333 3678889999999999998765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=130.43 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|.+++........ .|..... ..+.. .....+.++||||.... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV----PTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEEECCEEEEEEEEECCCChhh-----------h
Confidence 345899999999999999999999876432211 1111111 12222 12347899999996432 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCch
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKP 168 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~ 168 (371)
......+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|...+. ....++... .....
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence 123345678999999999985433222 234455555433 2 4999999999976431 112211110 00112
Q ss_pred HHHHHHhcC-CceEeecCcchhhHh-hHHhHHHHHHHHHHHH
Q 040649 169 LKEILQLCD-NRWVLFDNKTKYEAK-RTEQVQQLLSLVNAVN 208 (371)
Q Consensus 169 l~~~~~~~~-~r~~~f~~~~~~sa~-~~~~i~~Ll~~i~~~~ 208 (371)
...+....+ ..++. .||+ ++.|+.++++.+...+
T Consensus 146 ~~~~~~~~~~~~~~e------~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 146 GANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeecCCCcCHHHHHHHHHHHH
Confidence 334444444 23333 5776 5799999999987654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-16 Score=148.85 Aligned_cols=175 Identities=17% Similarity=0.111 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|.+|||||||+|+|++...... ....+|..+....+.+.++..+.|+||||+.+.......+...+...+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~- 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE- 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence 3689999999999999999998764221 2233444444444555334789999999975321111112333444333
Q ss_pred hcCCceEEEEEEeCCC---CCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 100 AKDGIHAVLLVFSVRS---RFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.+|++|+|+|+++ +-+..+ ..++..+..........|+++|+||+|.... .. .+..+...
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e-----------~~~~l~~~ 299 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AE-----------NLEAFKEK 299 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HH-----------HHHHHHHH
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HH-----------HHHHHHHH
Confidence 3599999999974 222222 2344445443221134599999999997643 11 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC-CCCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG-QPYT 217 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~-~~y~ 217 (371)
+... ......||+++.++++|+..|...+..... ..|.
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 3321 112346778889999999999999887655 3444
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=135.66 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+++|++|+|||||+|.+++....... .|.......+.+ ++..+.++||||..... ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 86 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RVW 86 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----C-----------CGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHhhH-----------HHH
Confidence 4579999999999999999999987642211 111111233444 66889999999965421 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHH--H
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKE--I 172 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~--~ 172 (371)
..++.++|++++|+|++++-+-.. ...++...... ....|+++|+||+|..... ...+.+++.......-.. .
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 345567899999999985432221 22233332221 1224999999999986431 112222221100000000 0
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.....+.+. ....||+++.|++++++.+.+.
T Consensus 165 ~~~~~~~~~~---~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 165 LKELNARPLE---VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCSCCEE---EEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccCceEE---EEEEECCCCCCHHHHHHHHHHh
Confidence 0000001111 1346888999999999988643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=131.79 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+++|++|+|||||+|.+++...... ..|.......+.+ ++..+.++||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 3457999999999999999999998764221 1122222334445 67889999999975421 12
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~ 173 (371)
...++..+|++++|+|++++-+-.. ...++...... ....|+++|+||+|..... ...+.+++.... ..-+..+
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI 160 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---C
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-ccccccc
Confidence 2345678899999999985433222 12223322211 1224999999999987531 112222221100 0000000
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.....+. ....||+++.|+.++++.+.+
T Consensus 161 --~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 161 --EGQRPVE---VFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp --CSSCCEE---EEECBTTTTBSHHHHHHHHHT
T ss_pred --cccceEE---EEEeECCcCCCHHHHHHHHHh
Confidence 0001111 124688899999999998764
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=131.56 Aligned_cols=161 Identities=19% Similarity=0.115 Sum_probs=96.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+..+..+|+|+|.+|+|||||+|.+++...... ..+ |.......+.+ ++. .+.++||||....
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~---------- 80 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPEL---------- 80 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCH----------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC---CcceEEEEEEE-CCEEEEEEEEECCCChhh----------
Confidence 344568999999999999999999987765322 111 11111123333 443 5678999997541
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
. .+..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|........+ .......
T Consensus 81 -~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~ 146 (184)
T 3ihw_A 81 -Q-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVI-------DDSRARK 146 (184)
T ss_dssp -H-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCS-------CHHHHHH
T ss_pred -h-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccccc-------CHHHHHH
Confidence 0 2234699999999985433222 233333433211 12249999999999742210111 0011334
Q ss_pred HHHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 172 ILQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 172 ~~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+....+ ..++. .||+++.|+.++++.+...+..
T Consensus 147 ~~~~~~~~~~~e------~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 147 LSTDLKRCTYYE------TCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHTTTCEEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 455444 33333 6778889999999998876543
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-16 Score=132.05 Aligned_cols=165 Identities=18% Similarity=0.077 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... . ..|..... ..... .....+.++||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~-~---~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD-Y---VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-C---CCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 458999999999999999999997664221 1 11111111 11112 123356799999976432 2
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH---hcccCCchHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY---LGLECPKPLK 170 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~---l~~~~~~~l~ 170 (371)
.....+.++|++++|+|++++.+-... .++..+....+ . .|+++|+||+|.... ...... ..........
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 233456788999999999854332222 35555555433 2 499999999997654 211000 0000001123
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+....+. .++. .||+++.|+.+|++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYIE------CSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 34444443 3333 67888999999999987655
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=132.32 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.....+|+|+|.+|+|||||+|.+++...... . ..|..... ..+.+. ....+.||||||....
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 89 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y---VPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------- 89 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C---CCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-----------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-c---CCccceeEEEEEEECCEEEEEEEEeCCCcHhh-----------
Confidence 34567999999999999999999998765322 1 11111111 122221 2347899999996432
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCc
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPK 167 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~ 167 (371)
.......+..+|++|+|+|++++.+-.. ..++..+....+ . .|+++|+||+|..... ....++... ....
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~ 165 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYD 165 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHH
Confidence 1123345678899999999985433222 234455555433 2 4999999999976431 112211110 0011
Q ss_pred hHHHHHHhcC-CceEeecCcchhhHh-hHHhHHHHHHHHHHHH
Q 040649 168 PLKEILQLCD-NRWVLFDNKTKYEAK-RTEQVQQLLSLVNAVN 208 (371)
Q Consensus 168 ~l~~~~~~~~-~r~~~f~~~~~~sa~-~~~~i~~Ll~~i~~~~ 208 (371)
....+....+ ..++. .||+ ++.|+.++++.+.+.+
T Consensus 166 ~~~~~~~~~~~~~~~e------~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 166 QGANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEE------eeeccCCcCHHHHHHHHHHHH
Confidence 2334444444 23333 5776 5789999999987654
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.2e-16 Score=133.17 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH----HHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY----VSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~----~~~ei~~ 95 (371)
.+|+|+|++|+|||||+|++++...... . .+++|..... +.+ . .+.++||||+.+....... ....+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG-K-RPGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS-S-STTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC-C-CCCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5799999999999999999998874322 1 2233332222 222 2 6889999997654332211 1222222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHH---------HHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAV---------HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l---------~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
++......++++++|+|.. .+......+. ..+....... .|+++|+||+|..... ...
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~----~~~------ 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKNV----QEV------ 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSCH----HHH------
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCcH----HHH------
Confidence 2222245567888888875 2211101111 1111111122 3999999999987652 111
Q ss_pred chHHHHHHhcCCceEee-cCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 167 KPLKEILQLCDNRWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+....+..+..+ ......||+++.|+.++++.+...+....
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 142 --INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp --HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 223333333321000 01123678889999999999988776543
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=152.01 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCC-CCCcchHHH-HHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAESEYV-SKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~-~~~~~~~~~-~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||+|+|+|...... ...+++|.......+.+ ++..+.||||||+. .+...-+.. ......
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-- 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ-- 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH--
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH--
Confidence 6899999999999999999998764211 12234455444445555 78899999999987 542111100 011112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+..+|++|+|+|++++.+..+..+++.+ . . .|+++|+||+|.... ...++ +..++. .+
T Consensus 320 --~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~~ 378 (482)
T 1xzp_A 320 --EIEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-TD 378 (482)
T ss_dssp --HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-CS
T ss_pred --HhhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-CC
Confidence 23456999999999877777665554433 2 2 399999999998643 22221 222221 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+++ ..||+++.|+++|++.|...+.
T Consensus 379 ~~~i------~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 379 RHMV------KISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TTEE------EEEGGGTCCHHHHHHHHHHHTH
T ss_pred CcEE------EEECCCCCCHHHHHHHHHHHHh
Confidence 2333 3688899999999999987644
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-16 Score=153.65 Aligned_cols=167 Identities=18% Similarity=0.146 Sum_probs=106.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.....+|+|+|++|+|||||+|+|++....... ...++|.........+.....+.+|||||+.+......... .
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~----~ 105 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV----E 105 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH----H
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH----H
Confidence 345689999999999999999999988753221 23445555555556652333899999999987543211111 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.....+..+|++|+|+|+ .....+..++..+... . .|+++|+||+|......... ...+...
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~---~--~piIvV~NK~Dl~~~~~~~~-----------~~~l~~~ 167 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM---E--IPFVVVVNKIDVLGEKAEEL-----------KGLYESR 167 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT---T--CCEEEECCCCTTTTCCCTHH-----------HHHSSCC
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc---C--CCEEEEEeCcCCCCccHHHH-----------HHHHHHH
Confidence 123345678999999998 4667777777777765 2 39999999999876522211 1222222
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
++.+++ ..||+++.++.+|++.+...+...
T Consensus 168 ~g~~v~------~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 YEAKVL------LVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TTCCCC------CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred cCCCEE------EEECCCCCCHHHHHHHHHHhhhhh
Confidence 233333 367788899999999999988654
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=127.18 Aligned_cols=161 Identities=20% Similarity=0.099 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
....+|+|+|.+|+|||||+|.+++...... . ..|....+ ..... ++ ..+.|+||||...... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISE-Y---DPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN--------C 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSC-C---CTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC--------T
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcc-c---CCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh--------H
Confidence 3458999999999999999999998764221 1 11211111 12222 33 3678999999754321 1
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
...+..+|++++|+|++++-+-.. ..++..+...... ....|+++|+||+|.........+ ....
T Consensus 86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~---------~~~~ 152 (187)
T 3c5c_A 86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA---------EGVA 152 (187)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHH---------HHHH
T ss_pred ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHH---------HHHH
Confidence 123456799999999984322222 2234444443210 012399999999997533111111 1233
Q ss_pred HHHhcCCceEeecCcchhhH-hhHHhHHHHHHHHHHHHh
Q 040649 172 ILQLCDNRWVLFDNKTKYEA-KRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa-~~~~~i~~Ll~~i~~~~~ 209 (371)
+....+..++. .|| +++.|+.++++.+...+.
T Consensus 153 ~~~~~~~~~~e------~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 153 LAGRFGCLFFE------VSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHTCEEEE------CCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEE------EeecCccccHHHHHHHHHHHHh
Confidence 44444544443 566 678999999999876654
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=141.28 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC---CCc-----------------------ccee--------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG---SSA-----------------------ITKT-------------- 57 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~---~~~-----------------------~t~~-------------- 57 (371)
..++|+|+|.+|+|||||+|+|+|....+.... ..+ .|..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999886422111 001 0000
Q ss_pred ---------EEEEeEEeeCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCCceEEE-EEEeCCCCCCHHHHHHH
Q 040649 58 ---------CEMKTTVLKDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDGIHAVL-LVFSVRSRFSQEEEAAV 125 (371)
Q Consensus 58 ---------~~~~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~~d~vl-~v~d~~~~~~~~~~~~l 125 (371)
........+....+.||||||+..... ........+...+..++..++.++ +|+|++.+++..+. +
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH--H
Confidence 000001111246899999999986421 011111223333334444556554 79999866665543 2
Q ss_pred HHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 126 HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 126 ~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+...... ..|+++|+||+|..... ....+.+.. .+..+...+++ ....||+++.|+.+|++.+.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~---v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYIG---VVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEEE---CCCCCCBCTTSCBCHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCC-chHHHHHhC--------CcCcCCCCcEE---EECCChhhccccccHHHHHH
Confidence 223332222 24999999999987542 111222211 00011111222 23468888999999998887
Q ss_pred H
Q 040649 206 A 206 (371)
Q Consensus 206 ~ 206 (371)
.
T Consensus 249 ~ 249 (299)
T 2aka_B 249 A 249 (299)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=131.90 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||++.+++...........+.. . ...+.. ++ ..+.|+||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~--~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN--F-SANVAV-DGQIVNLGLWDTAGQEDYSR----------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC--E-EEEEEC-SSCEEEEEEECCCCCCCCCC-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee--E-EEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 45899999999999999999999766422211111111 1 112223 33 4789999999865321
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh-cccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL-GLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l-~~~~~~~l~~~ 172 (371)
....++..+|++|+|+|++++.+-.. ..++..+....+ . .|+++|+||+|.... ....... ..........+
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHH
Confidence 12345678899999999985432222 234555555433 2 499999999997654 2110000 00001113344
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
....+. .++. .||+++.|+.++++.+...+...
T Consensus 148 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 148 RKQIGAAAYIE------CSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHcCCceEEE------ccCCCCCCHHHHHHHHHHHHhhh
Confidence 444443 3433 67788899999999998777654
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=129.68 Aligned_cols=156 Identities=19% Similarity=0.101 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|.+|+|||||+|.+++..... ..+ .+.. .....+.. ++ ..+.++||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~-~~~~~~~~-~~~~~~l~i~Dt~G~~~------------~- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESE-QYKKEMLV-DGQTHLVLIREEAGAPD------------A- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSS-EEEEEEEE-TTEEEEEEEEECSSSCC------------H-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-Ccce-eEEEEEEE-CCEEEEEEEEECCCCch------------h-
Confidence 45899999999999999999999876532 111 1111 11222333 33 3678999999653 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC-CCCeEEEEEeCCCCCCCc--hhhHHHHhcccCCchHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK-IFDYMIVVFTGGDDLEDN--EKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~--~~~l~~~l~~~~~~~l~~ 171 (371)
.++.++|++++|+|++++.+-.. ..++.++....... ...|+++|+||+|..... ....+ ....
T Consensus 68 ---~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~---------~~~~ 135 (178)
T 2iwr_A 68 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA---------RARA 135 (178)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH---------HHHH
T ss_pred ---HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH---------HHHH
Confidence 12334699999999985433222 22333454443211 124999999999974211 01111 1233
Q ss_pred HHHhc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 172 ILQLC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 172 ~~~~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.... +.+++ ..||+++.|+.++++.+...+.
T Consensus 136 ~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 136 LXADMKRCSYY------ETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHhhcCCeEE------EEeccccCCHHHHHHHHHHHHH
Confidence 33333 22333 3677888999999998876543
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=128.62 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+|+|.+|+|||||+|.++|... +.....+.+.+ .....+.+ ++. .+.++||||... . . .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d--~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~---~--~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERTLMV-DGESATIILLDMWENKG-----E---N--E 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEEEEE-TTEEEEEEEECCTTTTH-----H---H--H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcccee--eEEEEEEE-CCeeeEEEEeecCCCcc-----h---h--h
Confidence 347899999999999999999997543 22221111222 22222333 444 467899998432 0 1 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.....++..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+........++ ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 122345677899999999984322111 122233332211 1124999999999975321111111 11222
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+..++ ..||+++.|+++|++.+...+.
T Consensus 173 ~~~~~~~~------e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 VVFDCKFI------ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 23333333 3688899999999999887654
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-15 Score=141.51 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccc--------------eeEEEEeEEe----eCCcEEEEEeCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAIT--------------KTCEMKTTVL----KDGQVVNVIDTPG 78 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t--------------~~~~~~~~~~----~~~~~i~liDTPG 78 (371)
.+..+|+++|++|+|||||+|+|+|....... .....+ .........+ .....+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 34589999999999999999999985432110 000000 0000000000 0125789999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhH
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTL 157 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l 157 (371)
..+ +.......+..+|++|+|+|++.+. .......+..+... +. .|+++|+||+|.... ...
T Consensus 85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~ 147 (403)
T 3sjy_A 85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEA 147 (403)
T ss_dssp CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHH
T ss_pred cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHH
Confidence 643 2223333456789999999999776 55556666555543 43 389999999998755 333
Q ss_pred HHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 158 EDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 158 ~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...... +...+..++...+ +....||+++.|+.+|++.+...++.
T Consensus 148 ~~~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCCC
Confidence 333332 4444433321111 11236788899999999999987654
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=142.36 Aligned_cols=160 Identities=13% Similarity=0.024 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.|++...... ..|.......+.. .+..+.|+||||...... ..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----------LW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CC-----------SH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHH-----------HH
Confidence 346899999999999999999998774322 1233344444444 677899999999543221 12
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++|+|+|++++-+-. ...+...+...... ..|+++|+||+|.... ....+... .+..
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~--~~~~~i~~---------~~~~ 293 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA--MNAAEITD---------KLGL 293 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC--CCHHHHHH---------HHTC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc--cCHHHHHH---------Hhch
Confidence 33456789999999998543322 22222222221111 2499999999998755 22222111 1111
Q ss_pred c--CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 C--DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. ....+. ....||+++.|+++|++.|...+..
T Consensus 294 ~~~~~~~~~---~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 294 HSLRHRNWY---IQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCCSSCEE---EEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hhhhcCCCE---EEEEECCCCcCHHHHHHHHHHHHHh
Confidence 0 011111 1236888899999999999877653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=125.49 Aligned_cols=174 Identities=11% Similarity=0.193 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch--HHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES--EYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~--~~~~~ei~ 94 (371)
.++.+|+|+|++|+|||||+|+|+|...........+.+..... +.+ .+ .+.++||||+.....+. ........
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 45579999999999999999999998721111112233322221 222 22 57799999986532111 01111122
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........++++++|+|+..+.+..+.....++.. .+ .|+++|.||+|.+.. ......+.. +..++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HHHHHH
Confidence 222223457899999999987776655555555542 22 388999999998754 221111111 333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..+.. .+.|++++.++.++++.+.+.+..
T Consensus 168 ~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence 33321221 235778889999999999887765
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-15 Score=151.58 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc----------------cC----CCCCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK----------------AS----AGSSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
..++|+|+|++|+|||||+|+|++..... .. ....++|.......+.+ .+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 45799999999999999999996211000 00 00012333333444555 77899999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|+.+... ....++..+|++|+|+|++.+........+..+... . .|+++|+||+|....
T Consensus 91 G~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCS
T ss_pred CchhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCccc
Confidence 9887522 123345567999999999988888877777666532 2 399999999998754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=142.59 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee---EE-----------------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT---CE----------------------------------- 59 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~---~~----------------------------------- 59 (371)
.-+.|+|+|.+|||||||+|+|+|...++.+... +|.. ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~--vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS--CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc--ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 3459999999999999999999998765443221 1100 00
Q ss_pred ----------------EEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH
Q 040649 60 ----------------MKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE 121 (371)
Q Consensus 60 ----------------~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~ 121 (371)
...+..+....+.||||||+...... .......+...+..++..+|++|+|++.... ....
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~ 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLAT 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCC
Confidence 00011113456899999999875321 1223345556666667789999999976521 2222
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 122 EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+..+...... ..|+++|+||+|....
T Consensus 190 ~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 SDAIKISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CHHHHHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHHHHHhccc--CCCEEEEEeCCccCCC
Confidence 3344455443322 2499999999998855
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=143.08 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=101.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-----------------------------CCCCccceeEEEEeEE
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSAITKTCEMKTTV 64 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~ 64 (371)
.+..+..+|+++|++|+|||||+|.|++....... ....++|.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34456689999999999999999999654210000 0013556666666565
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCCCCC
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFS-------QEEEAAVHRLQTLFGKKIF 137 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~ 137 (371)
+ .+..+.||||||+.+ +...+...+..+|++|+|+|++.+.. ......+..+.. .+.
T Consensus 92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v--- 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV--- 155 (439)
T ss_pred c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---
Confidence 5 678999999999643 23333334556799999999986543 344444444443 232
Q ss_pred CeEEEEEeCCCCCCCc--hhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHH
Q 040649 138 DYMIVVFTGGDDLEDN--EKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~--~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
.++++|+||+|....+ ....+..... +..++..++-.........+.||+++.|+.++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2499999999986431 1222322222 4455554442100000123468888999988544
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-14 Score=135.02 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|+|+|...... ...+.|.......+.+ ++..+.++||||+..... .. ....+... ..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp-~~-lve~f~~t-l~ 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIP-PQ-IVDAFFVT-LS 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSCC-GG-GHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCC-HH-HHHHHHHH-HH
Confidence 4599999999999999999999875322 1223343333344555 678899999999754211 11 11222222 22
Q ss_pred hcCCceEEEEEEeCCCCC--CHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 100 AKDGIHAVLLVFSVRSRF--SQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.+..+|++++|+|++++. ..... .+...+.. ++. ...|+++|+||+|..... ....+.. +..+....
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~~~---~~~~~~~-----~~~l~~~l 323 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKINGD---LYKKLDL-----VEKLSKEL 323 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCCSC---HHHHHHH-----HHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCCch---HHHHHHH-----HHHHHHHh
Confidence 456779999999998543 11112 12333443 331 124999999999987541 1111110 11222222
Q ss_pred -CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 -DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 -~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...+. ....|++++.|+++|++.|...+...
T Consensus 324 ~~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 324 YSPIFD----VIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CSCEEE----EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCc----EEEEECCCCcCHHHHHHHHHHHhccc
Confidence 11111 13468888999999999999888764
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=133.11 Aligned_cols=169 Identities=17% Similarity=0.080 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH-HHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI-AKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei-~~~~ 97 (371)
..+|+|+|.+|+|||||+|.+++...... ....+.|.........+.++..+.+|||||... ....+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhHH
Confidence 47999999999999999999988743211 112344555555544443566899999999532 11111 1233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++|+|+|++++.+..+. .+..++..........|+++|+||+|...+ ........ .....+..+....
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~-v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQ-IMMKNLSETSSEF 151 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHH-HHHHHHHHHHHHc
Confidence 4455788999999999865444433 233334333211112499999999998753 11111000 0011245566655
Q ss_pred C---CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 D---NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~---~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+ ..++. .|+++ .++.+++..+.
T Consensus 152 g~~~~~~~~------tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 152 GFPNLIGFP------TSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp TCCSCEEEE------CCTTS-SHHHHHHHHHH
T ss_pred CCCCeEEEE------eeecC-ChHHHHHHHHH
Confidence 5 23333 45555 56666665544
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=141.29 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC-------ccccC--C------CCCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR-------AFKAS--A------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
..+..+|+++|++|+|||||+|+|++.. .+... . ...+.|.......+.. .+..+.||||||+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChH
Confidence 3456899999999999999999998731 10000 0 0123344333333333 56789999999976
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLED 159 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~ 159 (371)
+. .......+..+|++|+|+|++++........+..+... + .| +++|+||+|...+ ...++.
T Consensus 87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~~-~~~~~~ 149 (405)
T 2c78_A 87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVDD-PELLDL 149 (405)
T ss_dssp GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCCC-HHHHHH
T ss_pred HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccCc-HHHHHH
Confidence 52 22233345678999999999877777777776666542 3 26 8999999998753 122222
Q ss_pred HhcccCCchHHHHHHhcC-----CceEeecCcchhhHhhHHh------------------HHHHHHHHHHHHhh
Q 040649 160 YLGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRTEQ------------------VQQLLSLVNAVNVK 210 (371)
Q Consensus 160 ~l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~~~------------------i~~Ll~~i~~~~~~ 210 (371)
.... +..++..++ .++++ .||+++.+ +.+|++.+...++.
T Consensus 150 ~~~~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 150 VEME-----VRDLLNQYEFPGDEVPVIR------GSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHH-----HHHHHHHTTSCTTTSCEEE------CCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHH-----HHHHHHHhcccccCCCEEE------ccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2222 445555544 22333 56777766 78888888887653
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=141.12 Aligned_cols=166 Identities=14% Similarity=0.189 Sum_probs=103.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEee--------------C--------CcEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLK--------------D--------GQVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~i~l 73 (371)
.+..+|+++|++|+|||||+++|+|....... ....++|....+....+. . ...++|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45589999999999999999999986431111 111233443332222110 0 157999
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|||||.. .+ ...+......+|++|+|+|++.+. .......+..+.. ++. .|+++|+||+|....
T Consensus 88 iDtPGh~-------~f----~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 88 IDAPGHE-------AL----MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp EECSSHH-------HH----HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH
T ss_pred EECCChH-------HH----HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCCH
Confidence 9999942 22 222333344679999999999765 5566666655543 343 389999999998754
Q ss_pred chhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
......... +..++... ..+++ ..||+++.++.+|++.|...++.
T Consensus 153 --~~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 --EKALENYRQ-----IKEFIEGTVAENAPII------PISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCCEE------ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHH-----HHHHHHhcCcCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence 222222222 34444421 12233 36788899999999999987664
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=136.95 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----CccceeEEEEeEEee-CCc--EEEEEeCCCCCCCCcc-----
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SAITKTCEMKTTVLK-DGQ--VVNVIDTPGLFDSSAE----- 85 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~i~liDTPG~~~~~~~----- 85 (371)
..+|+|+|++|+|||||+|+|+|...+...... ...|.........+. .+. .++||||||+++....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999988765443211 012322222222221 232 6899999999764321
Q ss_pred --hHHHHHHHHHHHhhh---------cCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 86 --SEYVSKEIAKCIGMA---------KDGIHAVLLVFSV-RSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 86 --~~~~~~ei~~~~~~~---------~~~~d~vl~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
...+...+..++... ...+|+++|+++. ..++...+..++..+ ... .|+|+|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH-
Confidence 111112222333221 1246789999976 467887776555443 223 399999999998765
Q ss_pred hhhHHHHhcccCCchHHHHHHhcCCceEeecC
Q 040649 154 EKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185 (371)
Q Consensus 154 ~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~ 185 (371)
..+..+... +...+..++.+++.++.
T Consensus 190 -~ev~~~k~~-----i~~~~~~~~i~~~~~Sa 215 (361)
T 2qag_A 190 -KERERLKKR-----ILDEIEEHNIKIYHLPD 215 (361)
T ss_dssp -HHHHHHHHH-----HHHHTTCC-CCSCCCC-
T ss_pred -HHHHHHHHH-----HHHHHHHCCCCEEeCCC
Confidence 444433332 45555555656665543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-14 Score=136.44 Aligned_cols=168 Identities=17% Similarity=0.248 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC----CccceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SAITKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~ 90 (371)
-..+|+|+|++|+|||||+|+|+|...+..+... ...|.......+.+. .+ ..++++||||++.... ....+
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~-~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD-NSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------C
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhcc-chhhH
Confidence 3468999999999999999999998764332110 111222222222111 12 2689999999976421 11111
Q ss_pred HHHH--------HHH-------hhhc--CCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIA--------KCI-------GMAK--DGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~--------~~~-------~~~~--~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+. .++ ...+ +.+|++||+++.+ +++...+..++..+. . . .|+|+|+||+|.+..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~--v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-K--VNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-T--SEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-c--CcEEEEEEcccCccH
Confidence 1111 111 1112 3456777777765 578888866665553 2 2 499999999998865
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+..+... +...+...+.+++.|+.. ++.++.+++..+.
T Consensus 183 --~ev~~~k~~-----i~~~~~~~~i~~~~~sa~------~~~~v~~~~~~l~ 222 (418)
T 2qag_C 183 --EECQQFKKQ-----IMKEIQEHKIKIYEFPET------DDEEENKLVKKIK 222 (418)
T ss_dssp --HHHHHHHHH-----HHHHHHHHTCCCCCCC---------------------
T ss_pred --HHHHHHHHH-----HHHHHHHcCCeEEeCCCC------CCcCHHHHHHHHH
Confidence 455554443 556666667777665532 3455555554443
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=137.82 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc------ccc----C----CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA------FKA----S----AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+..+|+++|++|+|||||+++|++... +.. . ....+.|.......+.. .+..+.||||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~-- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence 357999999999999999999987421 000 0 00123444443333333 567899999999532
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHHhc
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
+...+...+..+|++|+|+|++.+........+..+.. .+ .| +++|+||+|...+ ...++....
T Consensus 79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~~-~~~~~~~~~ 143 (397)
T 1d2e_A 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQD-SEMVELVEL 143 (397)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCSC-HHHHHHHHH
T ss_pred ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCCC-HHHHHHHHH
Confidence 33334455678899999999997777777766665554 23 25 7899999998753 122222222
Q ss_pred ccCCchHHHHHHhcCC-----ceEeecCcchhhHhhHH---------h-HHHHHHHHHHHHhh
Q 040649 163 LECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRTE---------Q-VQQLLSLVNAVNVK 210 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~~---------~-i~~Ll~~i~~~~~~ 210 (371)
. +..++..++. ++++ .||+++. + +.+|++.+...++.
T Consensus 144 ~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 144 E-----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp H-----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred H-----HHHHHHHcCCCcccCcEEE------eehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2 4555655541 2333 5666654 4 88999999887764
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-14 Score=135.30 Aligned_cols=166 Identities=15% Similarity=0.226 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEee--------------C--------CcEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLK--------------D--------GQVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~i~l 73 (371)
.+..+|+++|++++|||||+++|+|....... ....+.|....+....+. + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999986431111 111233443332211110 1 157999
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|||||..+ +...+......+|++|+|+|++.+. .......+..+.. ++. .|+++|+||+|....
T Consensus 86 iDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 99999421 3333444456789999999999765 5555655555543 343 389999999998765
Q ss_pred chhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. ........ +..++... +.+++ ..||+++.++.+|++.+...++.
T Consensus 151 ~--~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 K--QAEENYEQ-----IKEFVKGTIAENAPII------PISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp T--TTTTHHHH-----HHHHHTTSTTTTCCEE------EC------CHHHHHHHHHHHSCC
T ss_pred H--HHHHHHHH-----HHHHHhhcCCCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence 2 11111111 33344321 12233 36888999999999999987654
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-15 Score=140.12 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++++|||||+++|+ ..++|.......+.+ .+..+++|||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 89999999999999999998 123444444444555 6778999999998763 122222 3
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeE-EEEEe-CCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM-IVVFT-GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ilv~t-k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+..+|++|+|+| +..........+..+.. ++. |. ++|+| |+|. .. ..++..... ++.++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 356799999999 76666666666665554 332 54 88999 9997 33 333322222 4444443331
Q ss_pred ceEeecCcch--hhHhh---HHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTK--YEAKR---TEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~--~sa~~---~~~i~~Ll~~i~~~~~~ 210 (371)
..++ ... .||++ +.|+++|++.|...++.
T Consensus 147 ~~~~---ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWE---CISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCE---EEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceE---EEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 1111 123 57778 89999999998877654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=124.91 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-ccccCCCCCccceeEEEEeEEe----eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSAITKTCEMKTTVL----KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~-~~~~~~~~~~~t~~~~~~~~~~----~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+|+|+|++|+|||||+|.++|.. .+.... .+.+........... .....+.++||||... +.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 70 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ-SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE-----------FY 70 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHH-----------HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCc-ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------HH
Confidence 689999999999999999999863 222111 111111111111111 1345789999999431 11
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....++.+.|++++|+|++++.+.. -..++..+....+ . .|+++|.||+|.... ......... ....+
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~ 141 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITKEL 141 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHHHT
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHHHH
Confidence 11122334569999999998542211 1233343433322 2 399999999997643 222211111 01122
Q ss_pred HHhcCCceEeecCcchhhHhhHH-hHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTE-QVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~~ 210 (371)
....+... .......||+++. ++.+|++.+.+.+..
T Consensus 142 ~~~~~~~~--~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 142 LNKRGFPA--IRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTCTTSCE--EEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCCcc--hhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 22222220 0011235777774 999999998876654
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-14 Score=141.33 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc--ccc------------CC---C--------------CCccceeEEEEeEEe
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA--FKA------------SA---G--------------SSAITKTCEMKTTVL 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~--~~~------------~~---~--------------~~~~t~~~~~~~~~~ 65 (371)
.+..+|+++|++|+|||||+|.|++... +.. +. . ..++|....+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4457999999999999999999986531 000 00 0 013343333333444
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.+..+.||||||..+. ...+ ...+..+|++|+|+|++.+........+..+.. ++. .|+++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~----~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHH----HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence 6678999999996542 1222 234567899999999997777777666665543 332 37999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcC--CceEeecCcchhhHhhHHhHHH
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCD--NRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
|+|....+...+...... +..++..++ ...+++ ...||+++.|+.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~---i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceE---EEEeccCCCCccc
Confidence 999875322333333332 555666555 211111 2357777888876
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-16 Score=158.39 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=106.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.++|+++|++|+|||||+|+|++...... ..+++|.....+.+.+..+..++||||||..++... ..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence 36899999999999999999998765322 234445444444444435668999999997664221 23
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH---HHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI---LQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~---~~~ 175 (371)
..+..+|++|+|+|++++........+..+... . .|+++|+||+|....+....... +... ...
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e~ 137 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEADPEKVKKE--------LLAYDVVCED 137 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCCC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEecccccccchHHHHHH--------HHhhhhhHHh
Confidence 445678999999999988888777776666532 2 39999999999864421111111 1111 111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++..+. ....||+++.|+.+|++.+..++.
T Consensus 138 ~~~~~~----iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 138 YGGDVQ----AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSSEE----ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred cCCCce----EEEEECCCCCCchhHHHHHHHhhh
Confidence 111111 234688899999999999988765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=132.63 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--Cccc-----------------------ee----------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--SAIT-----------------------KT---------------- 57 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--~~~t-----------------------~~---------------- 57 (371)
.++|+|+|.+|+|||||+|+|+|....+..... ...+ +.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999998764322110 0001 00
Q ss_pred --------EEEEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhc-CCceEEEEEEeCCCCCCHHHHHHHH
Q 040649 58 --------CEMKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAK-DGIHAVLLVFSVRSRFSQEEEAAVH 126 (371)
Q Consensus 58 --------~~~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~~~l~ 126 (371)
.....+..+++..++||||||+...... .......+...+..++ ...+++|+|++++..+...+. +.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~ 188 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LK 188 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HH
Confidence 0000011112467999999999864221 1111122233333333 344677777888755555443 23
Q ss_pred HHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 127 RLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+....+.. .|+++|+||+|..... ....+++... . ......++. ....||+++.++.+|++.+..
T Consensus 189 i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~-------~-~~l~~~~~~---v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLENK-------L-LPLRRGYIG---VVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHTTC-------S-SCCTTCEEE---CCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCcCC--CceEEEeccccccCcc-hhHHHHHhCC-------c-ccccCCceE---EEeCCcccccccccHHHHHHH
Confidence 344333322 4999999999987542 1122222110 0 001112222 234688899999999988865
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=142.30 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-cc----------------------------cCCCCCccceeEEEEeEEeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FK----------------------------ASAGSSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (371)
+..+|+++|++|+|||||+|.|++... +. ......++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 347999999999999999999975511 00 0001124555555555555 67
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeEE
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 141 (371)
..+.||||||+.+ +.......+..+|++|+|+|++.+ +.......+..+.. ++. .|++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8999999999754 223334445678999999999865 33445555444443 332 3799
Q ss_pred EEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc--eEeecCcchhhHhhHHhHHH
Q 040649 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR--WVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 142 lv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r--~~~f~~~~~~sa~~~~~i~~ 199 (371)
+|+||+|.........++.... +..++..++.. .++| ...||+++.|+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~---i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW---VPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEE---EECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceE---EEEeeecCCCccc
Confidence 9999999876433444443333 45555544421 1111 2356667777763
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-16 Score=136.17 Aligned_cols=167 Identities=14% Similarity=-0.007 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|.+++........ +.+.......... .....+.+|||||.... ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 93 (204)
Confidence 345899999999999999999999765422211 1111111111122 12335669999996542 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~~ 168 (371)
.....+..+|++++|+|++++.+-.+ ..++..+....+ ..|+++|+||+|.... ....+.+.. .....
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 22334567899999999885433332 234445544332 2499999999998754 111111100 00011
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+....+. ......||+++.|+++|++.+.+.
T Consensus 169 ~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 169 GLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 2222222221 112347889999999999987653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-15 Score=141.15 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCC--CCccceeEEEEeEEeeCC---cEEEEEeCCCCCCCCcchHH------
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG--SSAITKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAESEY------ 88 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~------ 88 (371)
++++|+|+||+|||||+|+|+|......... ..+.+.. ...+.+... ..++++||||++.... ...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~~-~~~~~~~i~ 119 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQIN-KEDSYKPIV 119 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-CC-HHHHSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhccc-cchhhhHHH
Confidence 4499999999999999999999864221111 1122221 122222122 2689999999986421 111
Q ss_pred --HHHHHHHHHhhh---------cC--CceE-EEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch
Q 040649 89 --VSKEIAKCIGMA---------KD--GIHA-VLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE 154 (371)
Q Consensus 89 --~~~ei~~~~~~~---------~~--~~d~-vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~ 154 (371)
+...+..++... .. .+|+ ++|++|++++++..+..+++.|. .. .|+|+|+||+|.+.+
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~--~~vI~Vi~KtD~Lt~-- 191 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SK--VNIIPIIAKADAISK-- 191 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SC--SEEEEEESCGGGSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hC--CCEEEEEcchhccch--
Confidence 111222222211 11 2354 55666887789988876666664 22 399999999999876
Q ss_pred hhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 155 KTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 155 ~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
..+..+... +..-+...+..++.|+..
T Consensus 192 ~E~~~l~~~-----I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 192 SELTKFKIK-----ITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHH-----HHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHH-----HHHHHHHcCCcEEecCCC
Confidence 556655554 555555567777777643
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=139.66 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=103.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee----------------------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT---------------------------------------- 57 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~---------------------------------------- 57 (371)
.-++|+|+|.+++|||||+|+|+|...++.+.. .+|..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 346999999999999999999999887554321 11110
Q ss_pred -----------EEEEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhc-CCceEEEEEEeCCCCCCHHHH-
Q 040649 58 -----------CEMKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAK-DGIHAVLLVFSVRSRFSQEEE- 122 (371)
Q Consensus 58 -----------~~~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~- 122 (371)
.....+..++...++||||||++..... .......+...+..+. ..+|++|+|+|++.++...+.
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0011111223456899999999974321 1112222222222222 578999999999977766664
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh-cCCceEeecCcchhhHhhHHhHHHHH
Q 040649 123 AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL-CDNRWVLFDNKTKYEAKRTEQVQQLL 201 (371)
Q Consensus 123 ~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~-~~~r~~~f~~~~~~sa~~~~~i~~Ll 201 (371)
.++..+.. . ..|+++|+||+|.+..... .. .+... ...-...|......||+++.|+++|+
T Consensus 208 ~ll~~L~~---~--g~pvIlVlNKiDlv~~~~~-~~------------~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 208 KIAKEVDP---Q--GQRTIGVITKLDLMDEGTD-AR------------DVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHHCT---T--CSSEEEEEECTTSSCTTCC-SH------------HHHTTCSSCCSSCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHHh---c--CCCEEEEEeCcccCCcchh-hH------------HHHHHHhhhhhccCCceEEecccccccchhHH
Confidence 44444432 1 2499999999998855211 11 11110 00000112234457888999999999
Q ss_pred HHHHH---HHhh
Q 040649 202 SLVNA---VNVK 210 (371)
Q Consensus 202 ~~i~~---~~~~ 210 (371)
+.+.. .++.
T Consensus 270 eaI~~e~~ffpe 281 (772)
T 3zvr_A 270 AALAAERKFFLS 281 (772)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccC
Confidence 99886 4554
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=122.18 Aligned_cols=120 Identities=8% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|++|+|||||+|.|++.......... ..+.. ..+ .+..+.+|||||....... +..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~-------~~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSA-----ADY-DGSGVTLVDFPGHVKLRYK-------LSDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCC-------HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-CCcee-----eee-cCCeEEEEECCCCchHHHH-------HHHH
Confidence 45579999999999999999999987643221111 11111 111 4567889999998765332 2222
Q ss_pred HhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhC-----CCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFG-----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~-----~~~~~~~ilv~tk~D~~~~ 152 (371)
+......+|++|+|+|++ .+ ........++...+. .....|+++|+||+|....
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 233334579999999997 22 111222223322221 0112499999999998765
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=132.74 Aligned_cols=167 Identities=15% Similarity=0.048 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||||+|.+++....... .+++.......+.. ++. .+.++||||.... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCccc---CCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hH
Confidence 3479999999999999999999976542221 11222111222233 444 4559999997542 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l 169 (371)
.....+..+|++++|+|++++.+-.+. .++..+....+ ..|+++|+||+|..... .....+.. .......
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHH
Confidence 234456788999999999854333332 34455555433 24999999999976541 11111111 0011123
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+....+. .++. .||+++.|+.+|++.+...+.
T Consensus 295 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 344444443 3333 677889999999999886654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=143.74 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CC---------------CCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AG---------------SSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~---------------~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++|+|||||+|.|++....... .. ..++|.......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 45689999999999999999999976321110 00 024555555555555 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..+.||||||+.+ +.......+..+|++|+|+|++.+ +.......+..+.. ++. .|+
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78999999999765 344555667789999999999842 23334444443332 332 379
Q ss_pred EEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHH
Q 040649 141 IVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQL 200 (371)
Q Consensus 141 ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~L 200 (371)
|+|+||+|........++..... +..++..++...- .......||+++.|+.+|
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~-~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFED-NINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGG-GCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhccccc-CccEEeeecccCCCcccc
Confidence 99999999876433344433332 5555555443100 000123677788888754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9e-14 Score=120.65 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+|+|+|.+|+|||||+|.++|... +.+...+.+.+ .....+.+ ++. .+.++||+|...... .
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~--------~-- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGED--TYERTLMV-DGESATIILLDMWENKGENE--------W-- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTT--EEEEEEEE-TTEEEEEEEECCCCC----C--------T--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccccee--EEEEEEEE-CCeEEEEEEEEeccCcchhh--------h--
Confidence 47999999999999999999997432 22211111112 22222333 444 457899999543100 0
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....++..+|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|..........+ ...+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 01222345699999999984322222 2233344443221 124999999999975321111111 112222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++ ..||+++.|+.++++.+...+.
T Consensus 143 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 143 VFDXKFI------ETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhCCceE------EeccccCCCHHHHHHHHHHHHH
Confidence 2333333 3688899999999999876654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=119.49 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=95.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|||||||+|.|+|....... .+..+.......+.+ ++. .+.++||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 478999999999999999999987653221 112222222333444 554 567899999543211 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..++++++|+|+..+.+-.. ..++..+...... ..|+++|+||+|.......... ....+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTD---------EARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHH---------HHHHHHHH
Confidence 1223456799999999884433222 2233334333222 2499999999997532111111 12344444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+. ..++ .|++++.++.++++.+...+..
T Consensus 140 ~~~--~~~d----~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 140 NNL--SFIE----TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTC--EEEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCC--eEEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence 333 3333 5777889999999998866543
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-14 Score=140.37 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=94.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccC------------CCCCccceeEEEEeEEee--C--CcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKAS------------AGSSAITKTCEMKTTVLK--D--GQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~i~liDTPG~~~ 81 (371)
..+|+|+|++|+|||||+++|++... .... ....++|.......+.+. + +..++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 47899999999999999999975211 0000 001234444333444442 2 25789999999876
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+ ..++...+. .+|++|+|+|++++.+......+..+... . .|+++|+||+|....+ .+...
T Consensus 84 F-------~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a~---~~~v~ 144 (599)
T 3cb4_D 84 F-------SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAAD---PERVA 144 (599)
T ss_dssp G-------HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC---HHHHH
T ss_pred H-------HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCccccc---HHHHH
Confidence 3 223333333 45999999999877776666555544432 2 3999999999987552 22221
Q ss_pred cccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 162 GLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
. .+...++.. .+.....||+++.|+.+|++.+...++..
T Consensus 145 ~--------ei~~~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 145 E--------EIEDIVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp H--------HHHHHTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred H--------HHHHHhCCC---cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 1 222222221 01223468889999999999999887754
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=139.88 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~ 81 (371)
.++|+|+|++|+|||||+++|+|...... .+++.|.........+. ....++||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 36899999999999999999997654221 11222222111111110 112589999999876
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+... ....+..+|++|+|+|+++++.......+..+... . .|+++|+||+|...
T Consensus 83 F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH 136 (594)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred HHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence 5322 12345678999999999988888877777776642 2 39999999999864
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-14 Score=132.35 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|||.|++|||||+|+|+|.... ....+++|..+....+.+ .+..+.++||||+.............+...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 468999999999999999999997753 234566777777766666 88899999999998754333334455555555
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC-CCCeEEEEEeCCCCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK-IFDYMIVVFTGGDDL 150 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~ 150 (371)
. +|++++|+|+++|+. +...+..-...++.. ..+|.++++||.|..
T Consensus 149 ~----ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 T----CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred h----cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4 499999999985543 233332222223322 235888999999963
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-15 Score=149.60 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=100.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.++|+++|++|+|||||+++|++...... ..+++|.....+.+.+ ++..++||||||+.++... ..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------RA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------BC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------HH
Confidence 36899999999999999999987543221 1234444433344444 6678999999998765322 22
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|++++........+..+... . .|+++++||+|....+...+...+... ..+...++.
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~~~~~v~~~l~~~-----~~~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEADPDRVKNELSQY-----GILPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTTCCCCTTCCCCCC-----CCCTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEeccccccCHHHHHHHHHHh-----hhhHHHhCC
Confidence 345678999999999876666666666555432 2 389999999998653212221111110 000011111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+. ....||+++.|+.+|++.+..
T Consensus 140 ~~~----~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 ESQ----FVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SCE----EEECCTTTCTTCTTHHHHTTT
T ss_pred Ccc----EEEEeeeeccCcchhhhhhhh
Confidence 111 123688899999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=119.83 Aligned_cols=120 Identities=10% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...++|+|+|++|+|||||+|+|++......... ...+... .+ .+..+.++||||..... ..+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHHH
Confidence 3457999999999999999999998775322111 1111111 11 45578999999986421 112233
Q ss_pred HhhhcCCceEEEEEEeCC---CCCCHHHHHHHHHHHHH---hCCCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGIHAVLLVFSVR---SRFSQEEEAAVHRLQTL---FGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~---~~~~~~~~~~l~~l~~~---~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+......+|++|||+|++ ..+......+...+... .... .|+++|+||+|....
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhccc
Confidence 333233479999999998 33433333333333221 1223 499999999998766
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=135.18 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-ccccC----------------------------CCCCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFKAS----------------------------AGSSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++|+|||||+++|++.. .+... ....++|.......+.+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 345899999999999999999998541 11100 00123455444444554 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..++||||||+.+ +...+...+..+|++|+|+|++++ ........+..+.. ++. .++
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 78899999999775 223344466788999999999854 22333434333332 332 278
Q ss_pred EEEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhcCC-----ceEeecCcchhhHhhHHhHH
Q 040649 141 IVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 141 ilv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~~~i~ 198 (371)
++|+||+|.... +...++..... +..++..++. .+++ .||+++.++.
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i~------iSA~~g~~v~ 201 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFVP------VVAPSGDNIT 201 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEEE------CBTTTTBTTT
T ss_pred EEEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecccCcccc
Confidence 999999998763 11233333333 5666665542 2333 5667777775
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=139.46 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=98.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-ccc-C-----------CCCCccceeEEEEeEEee--CC--cEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKA-S-----------AGSSAITKTCEMKTTVLK--DG--QVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~~--~~i~liDTPG~~ 80 (371)
...+|+++|++|+|||||+++|++... ... . ....++|.........+. ++ ..++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 357999999999999999999975210 000 0 001233333222333331 22 478899999987
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~ 160 (371)
++ ..++... +..+|++|+|+|++++.+......+..+... . .|+++|+||+|....+ .+..
T Consensus 85 dF-------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a~---~~~v 145 (600)
T 2ywe_A 85 DF-------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSAD---VDRV 145 (600)
T ss_dssp GG-------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC---HHHH
T ss_pred hH-------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCccccC---HHHH
Confidence 63 2223333 3456999999999988777766655554432 2 3999999999987552 2211
Q ss_pred hcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 161 LGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
. ..+...++.. .+.....||+++.|+.+|++.+...++..
T Consensus 146 ~--------~el~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 146 K--------KQIEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp H--------HHHHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred H--------HHHHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 1 2222222221 01223468889999999999998887754
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.7e-14 Score=139.71 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=94.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE----eEEee---CCcEEEEEeCCCCCCCCcchHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK----TTVLK---DGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
...+|+|+|.+|+|||||+|.++|...........+.+...... .+... .+..+.++||||........
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~---- 115 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH---- 115 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH----
Confidence 45899999999999999999999877532211112222111100 11111 25689999999965432211
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
...+..+|++|+|+|++. . .....++..+....+ . .|+++|+||+|.........+ .+.
T Consensus 116 -------~~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~---------~~~ 174 (535)
T 3dpu_A 116 -------QFFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQK---------KIN 174 (535)
T ss_dssp -------HHHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHH---------HHH
T ss_pred -------HHHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHH---------HHH
Confidence 112335799999999973 2 334556666766543 2 499999999998754211221 133
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
..+...+.+++. .||+++.|+++|+..+...+....
T Consensus 175 ~~~~~~~~~~~~------vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 175 ERFPAIENRFHR------ISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHCGGGTTCEEE------CCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHhcCCceEE------EecCcccCHHHHHHHHHHHHhccc
Confidence 344444544544 577888999999999998887643
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=136.62 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCC---------------cccc--CCCCCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL---GRR---------------AFKA--SAGSSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~---g~~---------------~~~~--~~~~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
..++|+|+|+.++|||||..+|+ |.. ..+. .-...++|.......+.| .+..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 35899999999999999999986 211 0000 011134555555566777 88999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
|+.|+.. +..+.+.. +|++|+|+|+..+........++.+... .+ |.++++||+|....+
T Consensus 109 GHvDF~~-------Ev~raL~~----~DgAvlVvda~~GV~~qT~~v~~~a~~~---~l--p~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 109 GHQDFSE-------DTYRVLTA----VDSALVVIDAAKGVEAQTRKLMDVCRMR---AT--PVMTFVNKMDREALH 168 (548)
T ss_dssp CGGGCSH-------HHHHHHHS----CSEEEEEEETTTBSCHHHHHHHHHHHHT---TC--CEEEEEECTTSCCCC
T ss_pred CcHHHHH-------HHHHHHHh----cCceEEEeecCCCcccccHHHHHHHHHh---CC--ceEEEEecccchhcc
Confidence 9988633 34455444 4999999999989999988888887764 33 999999999987653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=115.23 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcE--EEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQV--VNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|||||||+|.++|...... ....++.......+.+ ++.. +.++||||.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI----------- 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------
Confidence 46899999999999999999998775322 1222232333333444 5543 456999997643221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..++++++|+|.....+-.. ..++..+...... ..|+++|+||+|.......... ....+...
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~~ 163 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTD---------EARAFAEK 163 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 1223456689999999874322111 1233333332222 2499999999997532111111 12334443
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+ +..++ .|++++.++.++++.+.+.+
T Consensus 164 ~~--~~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NG--LSFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred cC--CEEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 33 33333 57788899999999887543
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.45 E-value=6e-13 Score=140.77 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc------ccc--------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA------FKA--------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|++|+|||||++.|++... +.. .....++|.......+.. .+..+.||||||..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH
Confidence 34568999999999999999999986410 000 001123343332222333 567899999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+...+...+..+|++|+|+|++++........+..+... +. | +|+|+||+|...+ ...++..
T Consensus 372 -----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI----P~IIVVINKiDLv~d-~e~le~i 434 (1289)
T 3avx_A 372 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV----PYIIVFLNKCDMVDD-EELLELV 434 (1289)
T ss_dssp -----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC----SCEEEEEECCTTCCC-HHHHHHH
T ss_pred -----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC----CeEEEEEeecccccc-hhhHHHH
Confidence 333444567789999999999977666666666665543 32 5 8999999998753 1222222
Q ss_pred hcccCCchHHHHHHhcC-----CceEeecCcchhhHhhH--------HhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRT--------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~--------~~i~~Ll~~i~~~~~ 209 (371)
... +..++...+ .++++ .||+++ .++.+|++.+...++
T Consensus 435 ~eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 435 EME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcC
Confidence 222 455555544 23444 345554 678999999887665
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=129.05 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|++|||||||+|+|+|...... .....|.......+.+.+...++++||||+.+.......+...+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---- 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---- 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH----
Confidence 4689999999999999999999854221 1222333333333444223789999999987531110001111222
Q ss_pred hcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....++++|+|+|++ +-...+. .....+..+...-...|.++|+||+|.... ..+.. +...+...+.
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~---------l~~~l~~~g~ 299 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGL 299 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTS
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHH---------HHHHHHhcCC
Confidence 234679999999996 2111121 122222222100012499999999996632 22221 3333333333
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.++. +||.++.++.+|++.|...+.....
T Consensus 300 ~vi~------iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 300 AVLP------VSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred eEEE------EECCCccCHHHHHHHHHHHHHhccc
Confidence 4443 5777889999999999998876543
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-14 Score=138.17 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=93.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-cccc-------------CCC---------------CCccceeEEEEeEEeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR-AFKA-------------SAG---------------SSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~-------------~~~---------------~~~~t~~~~~~~~~~~~~ 68 (371)
+..+|+++|++|+|||||+|.|++.. .+.. +.. ..++|.......+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 45799999999999999999998641 1100 000 023454444444444 66
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCCCCCCeEE
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQ-------EEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i 141 (371)
..+.||||||+.+ +...+...+..+|++|+|+|++.+... .....+..+.. .+. .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999754 333344567789999999999843221 33333333332 332 2599
Q ss_pred EEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-----CceEeecCcchhhHhhHHhHH
Q 040649 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 142 lv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~~~i~ 198 (371)
+|+||+|....+...++..... +..++..++ .++++ .||+++.++.
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------vSA~~g~nv~ 200 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPKTVPFVP------ISGWNGDNMI 200 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCCEEE------CCTTTCBTTT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCccCceEEE------eecccCcCcc
Confidence 9999999874322333333332 555555544 23333 4666666664
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=141.16 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=79.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC---CCccc----cCC---------CCCccceeEEEEeEEeeCCcEEEEEeCCC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILG---RRAFK----ASA---------GSSAITKTCEMKTTVLKDGQVVNVIDTPG 78 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~i~liDTPG 78 (371)
+.....+|+|+|++|+|||||+|.|+. ..... .+. ...++|.......+.+ .+..++||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG 86 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG 86 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence 334568999999999999999999982 21100 000 0123444444444555 678999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+. ......++. .+|++|+|+|++.+.+......+..+... . .|+++|+||+|....
T Consensus 87 ~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGA 144 (691)
T ss_dssp STTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred ccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccC
Confidence 8763 122333333 45999999999988887777776665542 2 399999999998755
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=138.46 Aligned_cols=136 Identities=21% Similarity=0.349 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEe----------------------------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKT---------------------------------- 62 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~---------------------------------- 62 (371)
...++|+|+|.+|+|||||+|+|+|........+..+.|.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 3457999999999999999999999876311111122221110000
Q ss_pred ---EEeeCC---cEEEEEeCCCCCCCCcchHHHHHH--HHHHHhhhcCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhC
Q 040649 63 ---TVLKDG---QVVNVIDTPGLFDSSAESEYVSKE--IAKCIGMAKDGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFG 133 (371)
Q Consensus 63 ---~~~~~~---~~i~liDTPG~~~~~~~~~~~~~e--i~~~~~~~~~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~ 133 (371)
+.+ .+ ..+.||||||+.+..... .... +...+..++..+|++|+|+|++. .+...+..++..+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 000 00 358999999998631110 0000 12222333446799999999985 3666666666555421
Q ss_pred CCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 134 KKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 134 ~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
..|+++|+||+|.... ..+.....
T Consensus 218 ---~~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp ---GGGEEEEEECGGGSCH--HHHHHHHH
T ss_pred ---CCCEEEEEECCCccCH--HHHHHHHH
Confidence 2489999999998865 44544433
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-13 Score=137.07 Aligned_cols=119 Identities=24% Similarity=0.312 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC---CCccccCCC-------------CCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG---RRAFKASAG-------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
....+|+|+|++|+|||||+|+|++ ......... ..++|.......+.+ .+..++||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 3458999999999999999999984 211000000 123343333444555 67899999999998
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+... +...++. .+|++|+|+|+..+.+..+...+..+... . .|+++|+||+|....
T Consensus 87 df~~-------~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTV-------EVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCH-------HHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred chHH-------HHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCcccc
Confidence 7421 2233333 35999999999988888877777766542 2 399999999998765
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-15 Score=148.67 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------C---------------CCCCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------S---------------AGSSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++|+|||||+|.|++...... + ....++|.......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 3557899999999999999999974311000 0 00124455555544554 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-----F--SQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..++||||||+.+.... +...+..+|++|+|+|++.+ + .......+..+.. ++. .++
T Consensus 254 ~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEI 318 (592)
T ss_dssp -----CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCE
T ss_pred CeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 678999999998753211 12334567999999999853 3 4455555555543 332 259
Q ss_pred EEEEeCCCCCCCchhhHHHHhcccCCchHHHHH-HhcCCc--eEeecCcchhhHhhHHhHH--------------HHHHH
Q 040649 141 IVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL-QLCDNR--WVLFDNKTKYEAKRTEQVQ--------------QLLSL 203 (371)
Q Consensus 141 ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~-~~~~~r--~~~f~~~~~~sa~~~~~i~--------------~Ll~~ 203 (371)
|+|+||+|....+...+...... +..++ ..++.. -++ ....||+++.|+. .|++.
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~---ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~ 390 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVH---FVPISAISGTNLIQKDSSDLYKWYKGPTLLSA 390 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEE---EEEECSSSCSSSCSCCCCGGGGTCCSCCHHHH
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceE---EEEEecccCcccccccccccccccchHHHHHH
Confidence 99999999875332444433333 45555 333321 111 1236777888887 78888
Q ss_pred HHHHHh
Q 040649 204 VNAVNV 209 (371)
Q Consensus 204 i~~~~~ 209 (371)
|..+++
T Consensus 391 l~~~~p 396 (592)
T 3mca_A 391 LDQLVP 396 (592)
T ss_dssp HHTSCC
T ss_pred HHhhcc
Confidence 876654
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=126.05 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--------------------eC---CcEEEEEeC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~i~liDT 76 (371)
.+|+|+|.+|+|||||+|+|+|.....+ ..+++|.........+ .+ ...+.++||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~--~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3799999999999999999999873211 1222332222211100 01 246899999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR 116 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~ 116 (371)
||+...... .+.+.......+..+|++++|+|++.+
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 998753111 111222222456789999999999753
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.40 E-value=3.2e-12 Score=131.83 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=78.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-cccc------CCC---------CCccceeEEEEeEEeeCC-------cEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFKA------SAG---------SSAITKTCEMKTTVLKDG-------QVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~------~~~---------~~~~t~~~~~~~~~~~~~-------~~i~l 73 (371)
....+|+|+|+.|+|||||++.|+... .+.. +.. ..++|.......+.+ .+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 345899999999999999999996421 1100 000 123444444444444 44 78999
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|||||..++ ..+... ++..+|++|+|+|++.+........+..+... . .|+++|+||+|....
T Consensus 87 iDTPG~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence 999998763 122333 33456999999999977766666665554432 2 399999999998754
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-13 Score=136.34 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc--CC------------------CCCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA--SA------------------GSSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
...+|+|+|++|+|||||++.|++...... +. ...++|.......+.+ .+..++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 457999999999999999999985321000 00 0112222222333444 67899999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|..+... . ...++..+|++|+|+|++.+........+..+.. .. .|+++|+||+|....
T Consensus 91 G~~df~~-------~----~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~---~~--ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSE-------D----TYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL---RD--TPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCH-------H----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT---TT--CCEEEEEECTTSCCS
T ss_pred CChhHHH-------H----HHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH---cC--CCEEEEEcCcCCccc
Confidence 9876421 1 2234556799999999997777666555544432 12 389999999998755
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-12 Score=119.41 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-----ccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcch---HH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-----AITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAES---EY 88 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-----~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~---~~ 88 (371)
.+++|+|++|+|||||+|+|+|...+.++.... ..+.......+... -...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 689999999999999999999987655432110 01111111111111 12368999999998643211 11
Q ss_pred HH----HHHHHHHhh----------hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 89 VS----KEIAKCIGM----------AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 89 ~~----~ei~~~~~~----------~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
+. ..+...... ....+++++|++|.. +++++.+..++..+... .++++|+||+|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 11 112222211 123468889999854 78999998777777643 399999999999876
Q ss_pred hhhHHHHhcccCCchHHHHHHhcCCceEeecC
Q 040649 154 EKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185 (371)
Q Consensus 154 ~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~ 185 (371)
..+..+... +...+...+..++.|..
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~~~~ 181 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYPQKE 181 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSSCSC
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccCCCC
Confidence 566666554 66667777777776643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-12 Score=118.21 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----CccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcc---h
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SAITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAE---S 86 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~---~ 86 (371)
-..+|+|+|++|+|||||+|+|+|...++..... ...|.......+... ....++++||||+++.... .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3478999999999999999999997443321110 001111111112211 1247899999999543110 0
Q ss_pred HHHHHHH----HHHHhhh---------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 87 EYVSKEI----AKCIGMA---------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 87 ~~~~~ei----~~~~~~~---------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+...+ ..++... ...++++||+++.+ .++...+.. .++.+. .. .++++|+||.|....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l~-~~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAIH-NK--VNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHHT-TT--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHHH-hc--CCEEEEEEeCCCCCH
Confidence 0111111 1222111 12356677777654 357777643 344332 22 389999999998754
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..+... +...+...+..++. .||+++ ++++++..+...+..
T Consensus 171 --~e~~~~~~~-----~~~~~~~~~~~~~e------~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 --KERERLKKR-----ILDEIEEHNIKIYH------LPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp --HHHHHHHHH-----HHHHHHHTTCCCCC------CC----------CHHHHHHHHT
T ss_pred --HHHHHHHHH-----HHHHHHHcCCeEEe------cCCccc-cccHHHHHHHHHhhc
Confidence 333322222 45556655554444 466777 899988887766543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.8e-13 Score=130.84 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-ccc-------------cC---------------CCCCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFK-------------AS---------------AGSSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++++|||||++.|++.. .+. .+ ....++|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 345799999999999999999997421 000 00 00124454444444555 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFS-------QEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..++||||||+.+. ...+...+..+|++|+|+|++.+.. ......+..+.. .+. .++
T Consensus 120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 788999999997642 2223344567899999999985421 223333333332 332 149
Q ss_pred EEEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhc-CCc---eEeecCcchhhHhhHHhHHHHH
Q 040649 141 IVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLC-DNR---WVLFDNKTKYEAKRTEQVQQLL 201 (371)
Q Consensus 141 ilv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~-~~r---~~~f~~~~~~sa~~~~~i~~Ll 201 (371)
++|+||+|.... +...++..... +..++... +-. -++| ...||+++.++.+++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~---i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY---MPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE---EECBTTTTBTTSSCC
T ss_pred EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceE---Eeccccccccccccc
Confidence 999999998642 11223333322 44455443 321 1111 235677777776643
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=131.93 Aligned_cols=116 Identities=25% Similarity=0.248 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc--cCC-----C---------CCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--ASA-----G---------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~--~~~-----~---------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
...+|+|+|++|+|||||++.|++..... .+. . ..++|.......+.+ .+..++|+||||..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 45799999999999999999998533210 000 0 013344444444444 677899999999765
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
. ......++. .+|++++|+|+..++.......+..+... . .|+++|+||+|..
T Consensus 87 f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG 139 (665)
T ss_dssp G-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred h-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence 2 223333333 45999999999888888777777776642 2 3999999999987
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=116.83 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=52.6
Q ss_pred CceEEEEEEeCCCC--CCHHH-HHHHHHHHHH-hCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc-C
Q 040649 103 GIHAVLLVFSVRSR--FSQEE-EAAVHRLQTL-FGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC-D 177 (371)
Q Consensus 103 ~~d~vl~v~d~~~~--~~~~~-~~~l~~l~~~-~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~-~ 177 (371)
++|++|+|+|++++ .+-.. ..++..+... .... .|+++|+||+|+... ..++ . ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 58999999999864 34332 2334444433 1122 399999999997533 2221 1 23333321 2
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..++ ..||+++.|+.++++.+...+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 2333 368888999999999987655
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=122.34 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.|+||||+.+. .. . ....+|++++|+|+..+.. ...+.. ..+. .|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~~-------~----l~~~~d~vl~V~d~~~~~~---~~~i~~--~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EF-------A----VADMVDMFVLLLPPAGGDE---LQGIKR--GIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---HH-------H----HHTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh---hh-------h----HHhhCCEEEEEEcCCcchh---HHHhHH--HHHh----cCCEEEEee
Confidence 5667899999998743 11 1 1346799999999874321 111111 1221 388999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCce-EeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW-VLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~-~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+|.... ......+.. +...+....... .........|++++.|+.+|++.|...+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 997632 121111111 111121111000 000111236888999999999999987754
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.3e-13 Score=125.41 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.||||||+... . . .....+|++|+|+|....... ..+...+ ...|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~----~------~----~~~~~aD~vl~V~d~~~~~~~------~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS----E------V----AVANMVDTFVLLTLARTGDQL------QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH----H------H----HHHTTCSEEEEEEESSTTCTT------TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH----H------H----HHHHhCCEEEEEECCCCCccH------HHHHHhH---hhcCCEEEEEC
Confidence 4568999999997641 1 0 112567999999998632111 1111100 11389999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee-cCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+|.... ......... +...+...+.....+ .+....||+++.|+++|++.|...+..
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 997643 233322222 333333222100000 112336888999999999999988765
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-13 Score=134.86 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCccc----cCCCC---------CccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFK----ASAGS---------SAITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~---g~~~~~----~~~~~---------~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
.++|+|+|+.++|||||..+|+ |...-. .+... .++|.......+.| .+..++||||||+.|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 3689999999999999999885 322110 00000 14555555556667 8889999999999985
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+....+. -+|++|+|+|+..+........++.+... .+ |.++++||+|....
T Consensus 81 -------~~Ev~raL~----~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~l--p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 -------LAEVYRSLS----VLDGAILLISAKDGVQAQTRILFHALRKM---GI--PTIFFINKIDQNGI 134 (638)
T ss_dssp -------HHHHHHHHT----TCSEEECCEESSCTTCSHHHHHHHHHHHH---TC--SCEECCEECCSSSC
T ss_pred -------HHHHHHHHH----HhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CC--CeEEEEeccccccC
Confidence 233444444 45999999999989988888888888765 33 88999999998755
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=119.98 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=63.0
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.||||||+.+. .. . ....+|++++|+|++.+.. ...+.. ...+ .|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~----~~---~-------~~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~~----~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS----ET---E-------VARMVDCFISLQIAGGGDD---LQGIKK--GLME----VADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTH----HH---H-------HHTTCSEEEEEECC---------CCCCH--HHHH----HCSEEEECC
T ss_pred cCCCEEEEeCCCccch----HH---H-------HHHhCCEEEEEEeCCccHH---HHHHHH--hhhc----ccCEEEEEC
Confidence 4678999999998752 11 1 1357799999999863211 001110 0111 288999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceE-eecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV-LFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~-~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+|.... ..+...+.. ++..+...+.... .+......|++++.|+++|++.|...+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 997643 233322222 3333332221000 0011234688899999999999988765
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-12 Score=118.39 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++.+.+...+.. ....+.|.......+ .....+.||||||......+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 489999999999999999886643221 111222322222222 134679999999976542110 0 12334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHH--hCCCCCCeEEEEEeCCCCCCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTL--FGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~--~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+++++|||+|+++++...-..+..++... ..+. .|+++|.||+|+..+
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccCch
Confidence 6788999999999966433333332333221 1223 399999999998755
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=113.22 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHhCCCCCCeEEEEEe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEA-AVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.+..+.||||||+... ... ....+|++++|+|+..+. +.. +...+... +.++|+|
T Consensus 146 ~~~~~iliDT~Gi~~~---~~~-----------v~~~~d~vl~v~d~~~~~---~~~~i~~~i~~~-------~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ETA-----------VADLTDFFLVLMLPGAGD---ELQGIKKGIFEL-------ADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSC---HHH-----------HHTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEE
T ss_pred CCCCEEEEECCCCCcc---hhh-----------HHhhCCEEEEEEcCCCcc---cHHHHHHHHhcc-------ccEEEEE
Confidence 4678999999999863 110 124679999999875221 111 00111121 6678889
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcC-------CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-------NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-------~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
|+|..... ......... +...+.... .+++ ..|+.++.|+++|++.|.....
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl------~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVV------TISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 99975431 111111111 222222111 2222 2688889999999999988765
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.4e-11 Score=122.04 Aligned_cols=120 Identities=26% Similarity=0.299 Sum_probs=83.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh---CCC------c-----ccc--CCCCCccceeEEEEeEEee------CCcEEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL---GRR------A-----FKA--SAGSSAITKTCEMKTTVLK------DGQVVNVI 74 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~---g~~------~-----~~~--~~~~~~~t~~~~~~~~~~~------~~~~i~li 74 (371)
+..++|+|+|+.++|||||..+|+ |.. . .++ .....++|......++.|. ++..++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456899999999999999999886 210 0 000 0011245554555555552 24689999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 75 DTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 75 DTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
||||+.|+ ..+....+..+ |++|+|+|+..+........++..... .+ |.++|+||+|....
T Consensus 91 DTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred eCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence 99999986 34455666655 999999999999999988888887765 33 99999999998755
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=112.79 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~~~~~ 83 (371)
.+|+|+|.+|+|||||+|+|+|...... ..+++|..+....+.+++ +..+.++||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 5899999999999999999998763211 122233333322233311 2478999999998642
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS 115 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~ 115 (371)
.....+...+.. .+..+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~----~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLA----NIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence 111111112222 2456799999999873
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-11 Score=113.46 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--------------------CCcEEEEEeCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--------------------DGQVVNVIDTPGL 79 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~i~liDTPG~ 79 (371)
.+|+++|.||+|||||+|+|+|...... ..+.+|..+......++ .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~--~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAA--NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCS--SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4799999999999999999998652111 11222222222111110 2357899999999
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS 115 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~ 115 (371)
.........+...+... +..+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence 86432211222333333 345699999999873
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-11 Score=125.34 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC--------------CCCccceeEEEEeEEee---------------CC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA--------------GSSAITKTCEMKTTVLK---------------DG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~ 68 (371)
...+|+|+|++|+|||||+++|++........ ...++|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 35789999999999999999998642110000 01122322222222231 15
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..++||||||+.+... +... ++..+|++|+|+|+.++.+......+..+... . .|+++|+||+|
T Consensus 98 ~~i~liDTPG~~df~~-------~~~~----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSCH-------HHHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHH
T ss_pred ceEEEEECcCchhhHH-------HHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCC
Confidence 6799999999987532 1222 33456999999999988887776655544421 2 39999999999
Q ss_pred CC
Q 040649 149 DL 150 (371)
Q Consensus 149 ~~ 150 (371)
..
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 75
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=104.59 Aligned_cols=131 Identities=14% Similarity=0.040 Sum_probs=66.8
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHH-HHHH-HHHhCCCCCCeEEEEEeC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRL-QTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l-~~~~~~~~~~~~ilv~tk 146 (371)
..+.||||||..+. .....+...+...+.. +++++|+|+....+..+... .... ....... .|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG--ATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT--SCEEEEECC
T ss_pred CCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC--CCeEEEEec
Confidence 37899999997531 0111111111223345 89999999864444444221 1111 1111112 389999999
Q ss_pred CCCCCCch-hhHHHHhcccCCchHHH-----------------HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 147 GDDLEDNE-KTLEDYLGLECPKPLKE-----------------ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 147 ~D~~~~~~-~~l~~~l~~~~~~~l~~-----------------~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+|...... ..+.+++.. ....... ++...+.. ......|++++.|+++|++.+...+
T Consensus 181 ~D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 181 VDLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp GGGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceEEEecCcccHHHHHHHHHHHh
Confidence 99775411 112222211 0000011 11222211 0123367888999999999999887
Q ss_pred hhcC
Q 040649 209 VKNG 212 (371)
Q Consensus 209 ~~~~ 212 (371)
...+
T Consensus 256 ~~~~ 259 (262)
T 1yrb_A 256 CTCG 259 (262)
T ss_dssp HHHC
T ss_pred cccc
Confidence 7543
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-10 Score=111.36 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCccccCCCC--C-------------ccceeEEEEe----------EE-e
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL------GRRAFKASAGS--S-------------AITKTCEMKT----------TV-L 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~~~~--~-------------~~t~~~~~~~----------~~-~ 65 (371)
+..+|+|+|++|+||||+++.|+ |..+....... + +++....... .. +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999 76542111100 0 0110000000 00 0
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVV 143 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv 143 (371)
..+..++||||||.... ......++...... ..+|.+++|+|+..+.. .......+... .| .++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEEE
Confidence 15668999999998753 22344444433331 26899999999985543 33333444332 16 4899
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc------------eEeecCcchhhHhhHHh-HHHHHHHHHHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR------------WVLFDNKTKYEAKRTEQ-VQQLLSLVNAV 207 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r------------~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~ 207 (371)
+||+|.....+..+. +...++.+ +.+|.+....|+..+.+ +..|++.+...
T Consensus 247 lNK~D~~~~~g~~l~-------------~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGGALS-------------AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTHHHH-------------HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHHHHH-------------HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999997744211121 11122222 23344445567777888 98999888765
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-11 Score=118.20 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc-----cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+|+++|.+|+|||||+|+|+|..... .....+++|..... +.+ +..+.++||||+.+..........+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3689999999999999999999864211 11122344433332 222 22388999999987643222222222
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+. ....++.++|+++....+.......+..+. +.. .|+++|+||+|.+..
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc
Confidence 22221 235678999999874211111111122221 222 399999999998755
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=100.68 Aligned_cols=155 Identities=13% Similarity=0.079 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc--c---CCCCCccce----------e-EEEEe---EE-----------eeCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK--A---SAGSSAITK----------T-CEMKT---TV-----------LKDG 68 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~--~---~~~~~~~t~----------~-~~~~~---~~-----------~~~~ 68 (371)
.++|+|+|++|+|||||+|.|++..... . ...+ +.+. . ..... +. ...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV-VSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC-CCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC-CCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4789999999999999999998642100 0 0000 0000 0 00000 00 1134
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.+|||||...... ......+++++|+|+....... ..... .++ .|+++|+||+|
T Consensus 109 ~d~iiidt~G~~~~~~--------------~~~~~~~~~i~vvd~~~~~~~~----~~~~~-~~~----~~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV--------------DFDLGENYRVVMVSVTEGDDVV----EKHPE-IFR----VADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSGGG--------------GCCCSCSEEEEEEEGGGCTTHH----HHCHH-HHH----TCSEEEEECGG
T ss_pred CCEEEEeCCCCCCCCc--------------hhccccCcEEEEEeCCCcchhh----hhhhh-hhh----cCCEEEEeccc
Confidence 4678888888522100 0112457899999987443211 11111 122 38999999999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
............ ...+...+..... ...|++++.|+.+|++.+...+..
T Consensus 166 l~~~~~~~~~~~---------~~~~~~~~~~~~i----~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 166 LAEAVGADVEKM---------KADAKLINPRAKI----IEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp GHHHHTCCHHHH---------HHHHHHHCTTSEE----EECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CCcchhhHHHHH---------HHHHHHhCCCCeE----EEeecCCCCCHHHHHHHHHHHHHH
Confidence 753200122222 2222222221111 125778889999999999876654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=109.87 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc-ccCCCCCcccee-E----------EEE--------------------------
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSAITKT-C----------EMK-------------------------- 61 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~-~~~~~~~~~t~~-~----------~~~-------------------------- 61 (371)
+.|+|+|++|||||||+++|+|...+ .++......+.. . ...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 35999999999999999999998655 233221111000 0 000
Q ss_pred --------------eEEeeCCcEEEEEeCCCCCCC--CcchHHHHHHHHHHHhhhcCC-ceEEEEEEeCCCCCCHHHHHH
Q 040649 62 --------------TTVLKDGQVVNVIDTPGLFDS--SAESEYVSKEIAKCIGMAKDG-IHAVLLVFSVRSRFSQEEEAA 124 (371)
Q Consensus 62 --------------~~~~~~~~~i~liDTPG~~~~--~~~~~~~~~ei~~~~~~~~~~-~d~vl~v~d~~~~~~~~~~~~ 124 (371)
.........+.++|.||+... ++.+......+...+..+... ...++++++.+..+. ....
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence 000012245899999998763 222223344555555554333 355666666553333 2234
Q ss_pred HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 125 VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 125 l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+..+...-+.. .++|+|+||+|.+..
T Consensus 204 l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcC--CceEEEecchhhcCc
Confidence 55555553332 489999999998855
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-09 Score=101.01 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccce-eEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITK-TCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..|+|+|+||||||||+|+|+|...+..+....+.+. ......+.......++++|+||++..... ..++...+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~~ 145 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKMK 145 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHHcC
Confidence 4899999999999999999999776555433221111 00111111112236899999998743211 223333332
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC--CC-----chhhHHHHhcccCCchHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL--ED-----NEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~--~~-----~~~~l~~~l~~~~~~~l~~ 171 (371)
. ...+.+++ ++.+ +.......+...+... + .|+++|+|+.|.+ ++ +.......+.. +..
T Consensus 146 L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~----~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----l~~ 211 (413)
T 1tq4_A 146 F--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----IRL 211 (413)
T ss_dssp G--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----HHH
T ss_pred C--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-C----CCeEEEEecCcccccCcccccCCHHHHHHHHHH-----HHH
Confidence 2 22345554 7776 3556666666666542 2 3999999999864 10 01122222221 333
Q ss_pred HH----Hhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 172 IL----QLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 172 ~~----~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+. ... ...+++++.... .+.++++|.+.|...++...
T Consensus 212 l~~~~l~~~g~~~~~iiliSsh~l----~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 212 NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCCCCCcEEEEecCcC----CccCHHHHHHHHHHhCccch
Confidence 32 121 235566655432 33679999999998887653
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=109.61 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEE--eeCCcEEEEEeCCCCCCCCc-chHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTV--LKDGQVVNVIDTPGLFDSSA-ESEYVSK 91 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~i~liDTPG~~~~~~-~~~~~~~ 91 (371)
..+..+|+|+|++|+|||||+|.|+|... +..+..+.++|.....+... ...+..+.||||||+++... +.....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~- 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS- 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH-
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH-
Confidence 34557899999999999999999999874 22222222333333222111 12567899999999997543 111111
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~ 130 (371)
.+....... .+ ++|+++...++..+...+..+..
T Consensus 114 ~~fala~ll---ss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 114 WIFALAVLL---SS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHH---CS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHHh---cC--eEEEECCCCccHHHHHHHHHHHH
Confidence 121111111 12 45556555788888776665543
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-11 Score=117.43 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC-----CccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR-----RAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+|+++|.+|+|||||+|+|+|. ..... ...+++|..... +.+ +..+.++||||+.+..........+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999987 22211 122344544333 222 23478999999987642222222222
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+. ....+|+++|+++....+.......+..+. +.. .|+++++||.|.+..
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 22221 125689999999884211111111122221 222 399999999998744
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.9e-10 Score=105.37 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~~~ 81 (371)
...+|+|+|.+|+|||||+|+|+|..... ...+++|..+....+.+++ ...+.++||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~--~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASA--ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 44789999999999999999999986521 2223334333332222211 23589999999886
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.......+...+. ..+..+|++++|+|+.
T Consensus 99 ~as~~~glg~~~l----~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNAFL----SHISACDGIFHLTRAF 127 (396)
T ss_dssp --------CCHHH----HHHHTSSSEEEEEEC-
T ss_pred ccchhhHHHHHHH----HHHHhcCeEEEEEecC
Confidence 4321111212222 3345679999999986
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-09 Score=101.30 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~ 79 (371)
...+.+|+|+|+||+|||||+|+|+|...... ...+++|..+....+.+.+ +..+.++||||+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 34567999999999999999999999764122 1123334333333333311 135799999998
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.......+.+...+... +..+|++++|+|+.
T Consensus 96 ~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 86433222222223333 34679999999986
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.7e-09 Score=94.35 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE 87 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 87 (371)
...+|+++|.||+|||||+|+|+|......+. .+++|...+. +. .+..+.++||||+........
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VK--VGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EE--eCCCEEEEECcCcCCCCCCCH
Confidence 45789999999999999999999987644332 2344544432 22 245789999999987654433
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-08 Score=94.65 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCccccC--CCCC-------------ccceeEEEEeE-----------Ee
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL------GRRAFKAS--AGSS-------------AITKTCEMKTT-----------VL 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~--~~~~-------------~~t~~~~~~~~-----------~~ 65 (371)
++..|+++|++|+||||++..|+ |..+.... ...+ ++......... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999987 44331110 0000 01000000000 00
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||.... ......++..... ...+|.+++|+|+..+ .........+.+.+ .+..+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~--~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISN--VIHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHH--hhcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 13467899999997753 2334444444332 2257999999999742 22233333333322 3778999
Q ss_pred eCCCCCCC
Q 040649 145 TGGDDLED 152 (371)
Q Consensus 145 tk~D~~~~ 152 (371)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99997644
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-08 Score=92.94 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC--------CHHHHHHHHHHHHHhCCC--C
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF--------SQEEEAAVHRLQTLFGKK--I 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~ 136 (371)
++..+.++||||... ....+..++.+++++|||+|+++.- ...-...+.++....... .
T Consensus 199 ~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 567899999999532 3344556788999999999998410 122233444555444321 1
Q ss_pred CCeEEEEEeCCCCC
Q 040649 137 FDYMIVVFTGGDDL 150 (371)
Q Consensus 137 ~~~~ilv~tk~D~~ 150 (371)
..|+|+|+||.|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 24999999999975
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-08 Score=88.97 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|+|.+|+|||||++.+++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999865
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=89.96 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=73.0
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC--------CHHHHHHHHHHHHHhCCC--C
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF--------SQEEEAAVHRLQTLFGKK--I 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~ 136 (371)
++..+.+|||+|... +...+..++.++|++|||+|+++.- ...-.....++....... .
T Consensus 191 ~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 191 KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 567899999999543 2334556788999999999998421 122334445555554421 1
Q ss_pred CCeEEEEEeCCCCCCCc--hhhHHHHhccc----CCchHHHHHH----hc-----CCceEeecCcchhhHhhHHhHHHHH
Q 040649 137 FDYMIVVFTGGDDLEDN--EKTLEDYLGLE----CPKPLKEILQ----LC-----DNRWVLFDNKTKYEAKRTEQVQQLL 201 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~~~--~~~l~~~l~~~----~~~~l~~~~~----~~-----~~r~~~f~~~~~~sa~~~~~i~~Ll 201 (371)
..|+++|+||.|+.... ...+..++... .......++. .. ...++++ .+||+++.+|.+++
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~~vF 335 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVF 335 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHHHHH
Confidence 24999999999975210 00011111000 0001122222 11 1222222 35788899999999
Q ss_pred HHHHHHHhh
Q 040649 202 SLVNAVNVK 210 (371)
Q Consensus 202 ~~i~~~~~~ 210 (371)
..+.+.+..
T Consensus 336 ~~v~~~i~~ 344 (353)
T 1cip_A 336 DAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-08 Score=94.66 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCccccC--CCC-------------CccceeEEEE----------eE-Ee
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL------GRRAFKAS--AGS-------------SAITKTCEMK----------TT-VL 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~--~~~-------------~~~t~~~~~~----------~~-~~ 65 (371)
++..|+++|++|+||||++..|+ |..+.-.. ... .++....... .. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 33321100 000 0110000000 00 00
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||...... ......++....... .+|.+++|+|+... .........+.+.++ +..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~-d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGE-ETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCC-TTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCccccC-CHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 1256788999999754101 223344454443333 46899999999732 223344455554432 788999
Q ss_pred eCCCCCCC
Q 040649 145 TGGDDLED 152 (371)
Q Consensus 145 tk~D~~~~ 152 (371)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99997643
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=92.82 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC---Cccce--------------eEEEEeEE---------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS---SAITK--------------TCEMKTTV--------------- 64 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~---~~~t~--------------~~~~~~~~--------------- 64 (371)
.++..|+|+|++|||||||++.|+|...+..+... ..+.. ...+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34578999999999999999999875432211100 00000 00000000
Q ss_pred -eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH---hhh-cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe
Q 040649 65 -LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI---GMA-KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 65 -~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~---~~~-~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
...+..+.||||+|.... ......++.+.. ... ...++-+++|+|+..+ ......++.+...++ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 013456889999998753 223333333332 212 2347889999998733 233334444544433 5
Q ss_pred EEEEEeCCCCC
Q 040649 140 MIVVFTGGDDL 150 (371)
Q Consensus 140 ~ilv~tk~D~~ 150 (371)
..+|+||.|..
T Consensus 441 tgvIlTKLD~t 451 (503)
T 2yhs_A 441 TGITLTKLDGT 451 (503)
T ss_dssp SEEEEECGGGC
T ss_pred CEEEEEcCCCc
Confidence 67899999964
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=86.12 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=75.7
Q ss_pred EeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC-------CC-CCHHHHHHHHHHHHHh
Q 040649 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR-------SR-FSQEEEAAVHRLQTLF 132 (371)
Q Consensus 61 ~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~-------~~-~~~~~~~~l~~l~~~~ 132 (371)
..+.. .+..+.+|||.|-. .....+..++.+++++|||+|++ +. -...-...+.++....
T Consensus 160 ~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 160 YPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp EEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred EEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 33444 66789999999932 24445567889999999999764 11 1122234455555555
Q ss_pred CCCC--CCeEEEEEeCCCCCCCc--hhhHHHHhcccCC---------chHHHHHHh---cC-CceEeecCcchhhHhhHH
Q 040649 133 GKKI--FDYMIVVFTGGDDLEDN--EKTLEDYLGLECP---------KPLKEILQL---CD-NRWVLFDNKTKYEAKRTE 195 (371)
Q Consensus 133 ~~~~--~~~~ilv~tk~D~~~~~--~~~l~~~l~~~~~---------~~l~~~~~~---~~-~r~~~f~~~~~~sa~~~~ 195 (371)
.... ..|+++|+||+|+.... ...+..|...... .++...+.. .. ..++.+ .+||+...
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~~ 303 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTE 303 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecCH
Confidence 4321 24999999999975321 0112222221110 011111111 11 222222 25777889
Q ss_pred hHHHHHHHHHHHHhhc
Q 040649 196 QVQQLLSLVNAVNVKN 211 (371)
Q Consensus 196 ~i~~Ll~~i~~~~~~~ 211 (371)
+|..++..+.+.+-.+
T Consensus 304 nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 304 NIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998766543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=86.17 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC------C-CC-c-c--------ceeEEEEeEE----------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA------G-SS-A-I--------TKTCEMKTTV---------------- 64 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~------~-~~-~-~--------t~~~~~~~~~---------------- 64 (371)
++..|+|+|++||||||+++.|+|...+..+. . .. + . .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998654332210 0 00 0 0 0000000000
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh-hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG-MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~-~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
...+..+.++||+|........-.........+. .....|+.+++++|+..+ ......+..+....+ ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~~-----~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHcC-----CcEEE
Confidence 0013356799999986532111111111222222 223568889999998743 223334444444333 67899
Q ss_pred EeCCCCC
Q 040649 144 FTGGDDL 150 (371)
Q Consensus 144 ~tk~D~~ 150 (371)
+||.|..
T Consensus 254 vTh~d~~ 260 (304)
T 1rj9_A 254 VTKLDGT 260 (304)
T ss_dssp EECTTSS
T ss_pred EECCccc
Confidence 9999965
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5e-08 Score=88.59 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
.+++++|.+|+|||||+|+|+|......+. ..++|..... +. .+..+.|+||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQW--FS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEE--EE--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999987644322 2334433321 11 345788999999998754
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-07 Score=92.64 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC------ccc--cCCC--------------------CCc-cceeEE-E--EeEEee
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR------AFK--ASAG--------------------SSA-ITKTCE-M--KTTVLK 66 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~------~~~--~~~~--------------------~~~-~t~~~~-~--~~~~~~ 66 (371)
...|+++|++|+||||+++.|++.. +.- .... ..+ .+.... . ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987632 100 0000 000 010000 0 000001
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCC-CeEEEEEe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIF-DYMIVVFT 145 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ilv~t 145 (371)
.+..+.||||||.... ......++... .....+|.+++|+|+..+. + .+..+.. |... . ....+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~---~--~~~~~~~-~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ---Q--AGIQAKA-FKEA-VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG---G--HHHHHHH-HHTT-SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH---H--HHHHHHH-Hhhc-ccCCeEEEEe
Confidence 4567899999998752 23333333221 2233689999999987432 1 2223322 2221 2 25899999
Q ss_pred CCCCCC
Q 040649 146 GGDDLE 151 (371)
Q Consensus 146 k~D~~~ 151 (371)
|+|...
T Consensus 247 K~D~~~ 252 (432)
T 2v3c_C 247 KLDGSA 252 (432)
T ss_dssp CSSSCS
T ss_pred CCCCcc
Confidence 999753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=5e-07 Score=84.58 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=67.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-------C--------------ccceeEEEEeEE-----------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-------S--------------AITKTCEMKTTV----------- 64 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------~--------------~~t~~~~~~~~~----------- 64 (371)
.++..|+|+|++||||||+++.|+|...+..+... . ++....+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45679999999999999999999875432221000 0 000000000000
Q ss_pred -eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 65 -LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 65 -~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
...+..+.++||+|....... ...++....... .+|..++++|+... ..-...+..+...++ ..++|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 002345678999998654222 233333322222 36889999998743 222333344443332 67899
Q ss_pred EeCCCCC
Q 040649 144 FTGGDDL 150 (371)
Q Consensus 144 ~tk~D~~ 150 (371)
+||.|..
T Consensus 275 lTKlD~~ 281 (328)
T 3e70_C 275 LTKLDAD 281 (328)
T ss_dssp EECGGGC
T ss_pred EeCcCCc
Confidence 9999964
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-07 Score=88.56 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC-----------------CccccCCCCCccceeEEEEeE----EeeC--CcEEE
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR-----------------RAFKASAGSSAITKTCEMKTT----VLKD--GQVVN 72 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~-----------------~~~~~~~~~~~~t~~~~~~~~----~~~~--~~~i~ 72 (371)
..+...|.|+|++++|||||+|.|+|. ..|..+......|...-.... ..+. ...+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 345578999999999999999999964 122222111222222111110 1112 24689
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~ 130 (371)
++||||+++...+ ......+....... .+++||-+. ..+...+...|..+.+
T Consensus 144 llDTeG~~~~~~~-~~~d~~ifal~~lL---Ss~~IyN~~--~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 144 LMDTQGTFDSQST-LRDSATVFALSTMI---SSIQVYNLS--QNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEEECCCSSHHH-HHHHHHHHHHHHHH---CSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred EEcCCcccccccc-hhhhHHHHHHHHHH---hhHHHHhhc--ccccHHHHHHHHHHHH
Confidence 9999999876321 11112222221111 255555543 3577777776666554
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.7e-06 Score=80.29 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-------CCCccccCCCCC-ccce----------eEEEEe--------------E-
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL-------GRRAFKASAGSS-AITK----------TCEMKT--------------T- 63 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~-------g~~~~~~~~~~~-~~t~----------~~~~~~--------------~- 63 (371)
.+...|+++|++|+||||++..|+ |..+......+. +... ...... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788999999999999998887 654321110000 0000 000000 0
Q ss_pred Eee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEE
Q 040649 64 VLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIV 142 (371)
Q Consensus 64 ~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (371)
... .+..+.||||||.... ......++.... ....+|.+++|+|+..... ....+..+... . ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~--~~~~p~~vllVvda~~g~~--~~~~~~~f~~~----l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVH--ASINPVETLFVVDAMTGQD--AANTAKAFNEA----L-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHH--HHSCCSEEEEEEETTBCTT--HHHHHHHHHHH----S-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHH--HhhcCcceeEEeecchhHH--HHHHHHHHhcc----C-CCeEE
Confidence 001 3567999999997653 222333333322 1336789999999874322 22222323221 1 13557
Q ss_pred EEeCCCCCC
Q 040649 143 VFTGGDDLE 151 (371)
Q Consensus 143 v~tk~D~~~ 151 (371)
|+||+|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999753
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=79.20 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC--------CCCCHHHHHHHHHHHHHhCCC--CCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR--------SRFSQEEEAAVHRLQTLFGKK--IFD 138 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~--------~~~~~~~~~~l~~l~~~~~~~--~~~ 138 (371)
..+.++||+|-.. +......++.+++++|+|+|++ ..-...-.....++....... ...
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 5789999999643 2333456788999999999986 111122233444444443321 124
Q ss_pred eEEEEEeCCCCC
Q 040649 139 YMIVVFTGGDDL 150 (371)
Q Consensus 139 ~~ilv~tk~D~~ 150 (371)
|+++|+||+|+.
T Consensus 252 piiLvgNK~DL~ 263 (354)
T 2xtz_A 252 SFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECcchh
Confidence 999999999964
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.5e-06 Score=77.95 Aligned_cols=124 Identities=17% Similarity=0.280 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC---Cccce--------------eEEEEe--EE--e----------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS---SAITK--------------TCEMKT--TV--L---------- 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~---~~~t~--------------~~~~~~--~~--~---------- 65 (371)
.++..++++|++||||||+++.|+|...+..+... ..+.. ...+.. .. .
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 34578999999999999999999875432221000 00000 000100 00 0
Q ss_pred ---eCCcEEEEEeCCCCCCCCcchHHHHHHHH---HHHh-hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCC
Q 040649 66 ---KDGQVVNVIDTPGLFDSSAESEYVSKEIA---KCIG-MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFD 138 (371)
Q Consensus 66 ---~~~~~i~liDTPG~~~~~~~~~~~~~ei~---~~~~-~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (371)
..+....++||.|+.... .....++. ..+. .....|+-+++|+|++..+... ..+..+....|
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~--~~~~~~~~~~g----- 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVG----- 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTC-----
T ss_pred HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHH--HHHHHHHHhcC-----
Confidence 012346789999987532 22222222 1222 2234688888888865444322 22333433322
Q ss_pred eEEEEEeCCCCC
Q 040649 139 YMIVVFTGGDDL 150 (371)
Q Consensus 139 ~~ilv~tk~D~~ 150 (371)
..++++||.|..
T Consensus 248 ~t~iiiThlD~~ 259 (302)
T 3b9q_A 248 ITGLILTKLDGS 259 (302)
T ss_dssp CCEEEEECCSSC
T ss_pred CCEEEEeCCCCC
Confidence 678899999865
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-06 Score=78.43 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC------CCccccCCCCC-ccce----------eEEEEeE--------------E-ee
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG------RRAFKASAGSS-AITK----------TCEMKTT--------------V-LK 66 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g------~~~~~~~~~~~-~~t~----------~~~~~~~--------------~-~~ 66 (371)
+..|+++|++|+||||+++.|++ ..+.-...... +.+. ....... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999873 32211100000 0000 0000000 0 00
Q ss_pred -CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 67 -DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 67 -~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.+..+.||||||..... ..+....++..... ...+|.+++|+|+... ......+..+.. .. ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----AS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----TC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----hC-CCCEEEEe
Confidence 45578999999987511 12223333332211 1257999999998732 222222232222 11 24788999
Q ss_pred CCCCCC
Q 040649 146 GGDDLE 151 (371)
Q Consensus 146 k~D~~~ 151 (371)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-06 Score=79.50 Aligned_cols=126 Identities=16% Similarity=0.267 Sum_probs=67.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC---CCccce--------------eEEEEeE--E--e----------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG---SSAITK--------------TCEMKTT--V--L---------- 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~---~~~~t~--------------~~~~~~~--~--~---------- 65 (371)
.++..|+|+|++||||||+++.|+|...+..+.. ...+.. ...+... . .
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 3457899999999999999999987543222100 000000 0001000 0 0
Q ss_pred ---eCCcEEEEEeCCCCCCCCcchHHHHHHHH---HHH-hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCC
Q 040649 66 ---KDGQVVNVIDTPGLFDSSAESEYVSKEIA---KCI-GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFD 138 (371)
Q Consensus 66 ---~~~~~i~liDTPG~~~~~~~~~~~~~ei~---~~~-~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (371)
..+....++||.|+.... .....++. ..+ ......|+-+++|+|++..+... ..+..+....|
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g----- 304 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVG----- 304 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTC-----
T ss_pred HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcC-----
Confidence 012346789999987542 21222222 122 22335688888999955333322 22333433333
Q ss_pred eEEEEEeCCCCCCC
Q 040649 139 YMIVVFTGGDDLED 152 (371)
Q Consensus 139 ~~ilv~tk~D~~~~ 152 (371)
..++++||.|....
T Consensus 305 ~t~iiiThlD~~~~ 318 (359)
T 2og2_A 305 ITGLILTKLDGSAR 318 (359)
T ss_dssp CCEEEEESCTTCSC
T ss_pred CeEEEEecCccccc
Confidence 67889999986533
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-06 Score=79.37 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=49.6
Q ss_pred eEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC--------CCCHHHHHHHHHHHHHhC
Q 040649 62 TTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS--------RFSQEEEAAVHRLQTLFG 133 (371)
Q Consensus 62 ~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~--------~~~~~~~~~l~~l~~~~~ 133 (371)
.+.+ ++..+.+|||+|-. .+...+..++.+++++|||+|++. .-...-...+.++...+.
T Consensus 155 ~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 155 DFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp EEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred EEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 3444 56789999999932 244555677899999999999861 011222334444444433
Q ss_pred CC--CCCeEEEEEeCCCCC
Q 040649 134 KK--IFDYMIVVFTGGDDL 150 (371)
Q Consensus 134 ~~--~~~~~ilv~tk~D~~ 150 (371)
.. ...|+++|+||+|+.
T Consensus 223 ~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred hhccCCCeEEEEEECchhh
Confidence 22 124999999999965
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.27 E-value=5e-06 Score=77.00 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC-------CCCccc----------eeEEEEeE----------------E
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA-------GSSAIT----------KTCEMKTT----------------V 64 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-------~~~~~t----------~~~~~~~~----------------~ 64 (371)
++..|+++|++|+||||++..|++......+. ...... ........ .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 45689999999999999999987643211100 000000 00000000 0
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh---hhc-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG---MAK-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~---~~~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
...+..+.|+||||.... ......++..... ... ..+|.+++|+|+..+ .........+.... ...
T Consensus 183 ~~~~~dvvIiDtpg~~~~---~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~-----~i~ 252 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVT 252 (306)
T ss_dssp HHTTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCC
T ss_pred HhcCCCEEEEECCCchhh---HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC-----CCC
Confidence 113456899999996432 3333343433322 112 358899999998621 12222222332221 256
Q ss_pred EEEEeCCCCCCC
Q 040649 141 IVVFTGGDDLED 152 (371)
Q Consensus 141 ilv~tk~D~~~~ 152 (371)
-+|+||.|....
T Consensus 253 gvVlTk~D~~~~ 264 (306)
T 1vma_A 253 GIILTKLDGTAK 264 (306)
T ss_dssp EEEEECGGGCSC
T ss_pred EEEEeCCCCccc
Confidence 788999996533
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-07 Score=85.29 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC------ccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS------AITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++|+|+||+|||||+|+|+|...+.++.... .+|..... ... . ..+++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence 4689999999999999999999987655443221 22221111 111 1 3579999998753
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-06 Score=80.84 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc------C--CCCC-------------ccceeEEEE-----e-----EE-e
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA------S--AGSS-------------AITKTCEMK-----T-----TV-L 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~------~--~~~~-------------~~t~~~~~~-----~-----~~-~ 65 (371)
++..|+++|++|+||||++..|++...... . ...+ ++....... . .. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456889999999999999998875322110 0 0000 000000000 0 00 0
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||.... ......++....... .+|.+++|+|+... ......+..+...+ ....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 13457899999997653 222333343332222 57889999998732 22222223333222 2567899
Q ss_pred eCCCCCC
Q 040649 145 TGGDDLE 151 (371)
Q Consensus 145 tk~D~~~ 151 (371)
||.|...
T Consensus 245 TKlD~~~ 251 (425)
T 2ffh_A 245 TKLDGDA 251 (425)
T ss_dssp ESGGGCS
T ss_pred eCcCCcc
Confidence 9999653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-06 Score=80.32 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC-------CCCcccee-----------EEEEe----------E-EeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA-------GSSAITKT-----------CEMKT----------T-VLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-------~~~~~t~~-----------~~~~~----------~-~~~~~ 68 (371)
++..|+|+|++|+||||++..|++......+. .....+.. ..... . .. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cC
Confidence 45689999999999999999987543221110 00000000 00000 0 01 34
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.|+||||.... ......++...+. ...++.+++|+|+++.. . .+..+...|. .....-+|+||.|
T Consensus 183 ~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~---~~~~~~~~~~--~l~~~giVltk~D 250 (296)
T 2px0_A 183 YDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY--E---DMKHIVKRFS--SVPVNQYIFTKID 250 (296)
T ss_dssp SSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH--H---HHHHHTTTTS--SSCCCEEEEECTT
T ss_pred CCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH--H---HHHHHHHHHh--cCCCCEEEEeCCC
Confidence 57899999998753 2222333333321 12468889999887321 1 2223333333 1235667889999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 251 ~~~~ 254 (296)
T 2px0_A 251 ETTS 254 (296)
T ss_dssp TCSC
T ss_pred cccc
Confidence 6633
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-05 Score=73.82 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcccc------CCCCCcc--------------ceeEEEE-eE------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKA------SAGSSAI--------------TKTCEMK-TT------------ 63 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~------~~~~~~~--------------t~~~~~~-~~------------ 63 (371)
.++..|+|+|++|+||||++..|++...... ....... .....+. ..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 3457899999999999999988865322110 0000000 0000111 00
Q ss_pred ----EeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH---Hhhhc-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC
Q 040649 64 ----VLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC---IGMAK-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK 135 (371)
Q Consensus 64 ----~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~---~~~~~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~ 135 (371)
....+..+.||||||.... ......++... +.... ..+|.+++|+++..+ ...+..++. |...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence 0013457899999997642 22233333322 22112 347899999998732 233444444 3322
Q ss_pred CCCeEEEEEeCCCCCC
Q 040649 136 IFDYMIVVFTGGDDLE 151 (371)
Q Consensus 136 ~~~~~ilv~tk~D~~~ 151 (371)
....-+|+||.|...
T Consensus 254 -~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTS 268 (320)
T ss_dssp -SCCCEEEEECGGGCS
T ss_pred -CCCcEEEEeCCCCCC
Confidence 235568999999653
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=75.84 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh-------C----------CCccccCCCCCccceeEEEEeE----EeeCC--cEEE
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL-------G----------RRAFKASAGSSAITKTCEMKTT----VLKDG--QVVN 72 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~-------g----------~~~~~~~~~~~~~t~~~~~~~~----~~~~~--~~i~ 72 (371)
..+...|.|+|+.++|||+|+|.|+ | ...|..+.+..++|...-.... ..+++ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 4466788999999999999999775 2 1233333333344443333221 11133 3699
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHH-HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKC-IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~-~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~ 130 (371)
++||.|+++...+...- ..|... +..+ +.+||=... .+...+...|..+.+
T Consensus 144 llDTEG~~d~~~~~~~d-~~ifaLa~LLS----S~~IyN~~~--~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDS-ATVFALSTMIS----SIQVYNLSQ--NVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHHH-HHHHHHHHHHC----SEEEEEEES--SCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCcccc-HHHHHHHHHHh----hheeecccc--cCCHHHHHHHHHHHH
Confidence 99999999875543221 222222 2222 566665544 467777666655543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.2e-06 Score=77.43 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC----c--cceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----A--ITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+..++|+|+||+|||||+|+|+ ...+.++.... + +|.... .... ....+++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~--~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPF--GKGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEE--TTTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEc--CCCcEEEECcCcCc
Confidence 4688999999999999999999 66555443221 1 121111 1111 13457999999864
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-06 Score=78.15 Aligned_cols=60 Identities=27% Similarity=0.228 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC------ccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS------AITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++++|+||+|||||+|+|+|...+.++.... .+|.... ... ......++||||+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence 4688999999999999999999988766543221 1121111 111 1234579999998653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.98 E-value=3.4e-06 Score=79.61 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~ 48 (371)
+..++|+|+||+|||||+|+|+|... +.++
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 45899999999999999999999876 5544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.8e-05 Score=72.97 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC------CCC-C--------------ccceeEE---EEe-------EE-e
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS------AGS-S--------------AITKTCE---MKT-------TV-L 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~------~~~-~--------------~~t~~~~---~~~-------~~-~ 65 (371)
++..++++|++|+||||++..|++......+ ... . +...... ..+ .. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998754321110 000 0 0000000 000 00 0
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||.... +.....++....... .+|.+++|+++.. .......++.+...+ ...-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~--~~~~~~~~~~~~~~~-----~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMT--GQEALSVARAFDEKV-----GVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGG--THHHHHHHHHHHHHT-----CCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCC--cHHHHHHHHHHhhcC-----CCCEEEE
Confidence 03457899999987653 222334444443322 4788899999873 222222222222211 2466899
Q ss_pred eCCCCCC
Q 040649 145 TGGDDLE 151 (371)
Q Consensus 145 tk~D~~~ 151 (371)
||.|...
T Consensus 245 nk~d~~~ 251 (295)
T 1ls1_A 245 TKLDGDA 251 (295)
T ss_dssp ECGGGCS
T ss_pred ECCCCCc
Confidence 9999653
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.2e-05 Score=69.13 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
||+..+..+.- ..+++..++|+|+||||||||++.|+|...
T Consensus 1 ~~~~~~~~~~~---~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 1 MGSDKIHHHHH---HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -----------------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCccccccccc---cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56665544322 223446899999999999999999998754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.9e-05 Score=69.05 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||++.|+|...+.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 59 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 346899999999999999999999877544
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=74.06 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|++|||||||++.|+|...+.++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 4568999999999999999999998765543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.58 E-value=3.5e-05 Score=68.01 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|+||||||||++.|+|...+.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 58 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPTE 58 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 45899999999999999999999876544
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.55 E-value=5.7e-05 Score=67.51 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTA 56 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 456899999999999999999999876554
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=4.7e-05 Score=68.86 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 60 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSE 60 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876544
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.53 E-value=5.4e-05 Score=68.60 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 65 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876554
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.2e-05 Score=67.88 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|||||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999855
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.9e-05 Score=68.53 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 61 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADE 61 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876554
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.51 E-value=5.3e-05 Score=68.27 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~ 69 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 345899999999999999999999876544
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.5e-05 Score=67.89 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 59 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVE 59 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.4e-05 Score=68.47 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~ 78 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDE 78 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999876544
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.51 E-value=5.1e-05 Score=69.11 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999876544
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.50 E-value=4.7e-05 Score=66.69 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|||||||++.|+|...+.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~ 63 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLK 63 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 45789999999999999999999876544
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.6e-05 Score=67.42 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 60 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876544
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.49 E-value=5.8e-05 Score=66.81 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 62 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 346899999999999999999999876443
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=5.8e-05 Score=67.62 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 63 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876544
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.47 E-value=6.4e-05 Score=67.02 Aligned_cols=28 Identities=39% Similarity=0.343 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
..++|+|+||||||||+++|+|...+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDR 52 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4789999999999999999999876544
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=3.8e-05 Score=66.34 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..++|+|+||||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999853
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=6.8e-05 Score=68.13 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~ 73 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTG 73 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876544
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.8e-05 Score=67.92 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~ 61 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876554
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.8e-05 Score=68.43 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~ 75 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATS 75 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=61.21 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|++|||||||++.|+|.. +.++
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 44689999999999999999999977 5443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.44 E-value=5.4e-05 Score=65.72 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|+||||||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.43 E-value=7.2e-05 Score=67.24 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 59 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.42 E-value=1.8e-05 Score=68.26 Aligned_cols=26 Identities=38% Similarity=0.756 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34688999999999999999999754
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00022 Score=68.22 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=51.0
Q ss_pred EeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHh
Q 040649 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLF 132 (371)
Q Consensus 61 ~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~ 132 (371)
..+.+ ++..+.||||+|-.. +...+..++.+++++|||+|+++- ....-.....++..+.
T Consensus 210 ~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 210 TKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp EEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred EEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 33444 667899999999543 233456678899999999999840 0122233445555544
Q ss_pred CCC--CCCeEEEEEeCCCCC
Q 040649 133 GKK--IFDYMIVVFTGGDDL 150 (371)
Q Consensus 133 ~~~--~~~~~ilv~tk~D~~ 150 (371)
... ...|++||+||+|+.
T Consensus 278 ~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 278 NNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCTTCSSCCEEEEEECHHHH
T ss_pred hcccCCCCeEEEEEEChhhh
Confidence 322 224999999999964
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.40 E-value=7.6e-05 Score=75.53 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 409 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCC
Confidence 457899999999999999999999877554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.38 E-value=6.6e-05 Score=63.73 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+++|+|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=74.51 Aligned_cols=30 Identities=33% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~ 397 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPER 397 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 456899999999999999999999876554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.37 E-value=7.8e-05 Score=66.93 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=26.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh---CCCccc
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSIL---GRRAFK 46 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~ 46 (371)
...++..|+|+|++||||||+++.|. |...++
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 33456799999999999999999999 866544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.37 E-value=8e-05 Score=64.12 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..|+|+|++|||||||++.|+|..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999863
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.37 E-value=8.2e-05 Score=81.89 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+|+|||+||||||||++.|+|-..+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1133 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLG 1133 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCC
Confidence 467999999999999999999999776554
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.37 E-value=9.8e-05 Score=66.20 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
++..++|+|++|||||||++.|+|...+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34589999999999999999999987643
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=8.1e-05 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..++|+|+||||||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0002 Score=72.19 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 456899999999999999999999876554
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00013 Score=62.14 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|++||||||+++.|+|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999986
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=8.3e-05 Score=68.72 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~ 108 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISS 108 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 456899999999999999999999876544
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=69.00 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~ 82 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTE 82 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCc
Confidence 346899999999999999999999887554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00012 Score=68.97 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+|+||||||||+++|+|...+.++
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 458899999999999999999998876553
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=67.43 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 92 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876443
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00011 Score=65.98 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|||||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999997
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00014 Score=65.92 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|||||||++.|+|..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999973
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=65.69 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|++|||||||++.|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00015 Score=65.62 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
..++|+|++|||||||++.|+|.. +.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 579999999999999999999987 654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00011 Score=63.72 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..|+|+|++|||||||++.|.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=68.71 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~ 57 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITS 57 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999887654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.26 E-value=5.2e-05 Score=66.11 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+|++|||||||+++|+|. .+.++
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 457899999999999999999998 65553
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=68.18 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCc
Confidence 345899999999999999999999877554
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=68.14 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTS 57 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCc
Confidence 345899999999999999999999877554
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00017 Score=67.95 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 69 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTK 69 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999887554
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0002 Score=67.92 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 65 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 65 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCc
Confidence 345889999999999999999999877554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++++|+||||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999998664
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=62.74 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++|||||||++.|.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999853
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=68.09 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCC
Confidence 345899999999999999999999887554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00027 Score=61.08 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCCCCCCCCCC--CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 1 MGERVINGDWK--PTSSSNGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 1 mg~~~~~~~~~--~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
||+|--..+.+ +.....++..|+|+|++||||||+++.|.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 1 MGSSHHHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -------------CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCccccccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 55544333222 23334456789999999999999999999853
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00012 Score=64.61 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=17.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-CCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL-GRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~-g~~ 43 (371)
++..|+|+|++|||||||++.|+ |..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999999 864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=78.65 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|||++|||||||++.|+|...+.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccccc
Confidence 457899999999999999999999876554
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.046 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
..++|+|++|+|||+++..|.+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998653
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00074 Score=64.01 Aligned_cols=98 Identities=7% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+...+.......|++++|+|++++ +..+...+...++. .|+++|+||+|+.... ...+ .+.. .+...
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~-~~~~-~~~~----~l~~~ 125 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGN---NKVLLVGNKADLIPKS-VKHD-KVKH----WMRYS 125 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSS---SCEEEEEECGGGSCTT-SCHH-HHHH----HHHHH
T ss_pred HHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCC---CcEEEEEEChhcCCcc-cCHH-HHHH----HHHHH
Confidence 444455555677899999999842 33444556666553 4999999999987542 1111 1111 13334
Q ss_pred HHhcCC---ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLCDN---RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~~~---r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
....+. .++ ..||+++.|+++|++.+.....
T Consensus 126 ~~~~g~~~~~v~------~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 126 AKQLGLKPEDVF------LISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHTTCCCSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEE------EEeCCCCcCHHHHHhhhhhhcc
Confidence 455554 233 3678889999999999987653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=67.85 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+|+||||||||+++|+|...+.++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 458899999999999999999998876553
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00019 Score=64.74 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..++|+|+||||||||+++|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3557899999999999999999998654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00015 Score=68.40 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|+||||||||+++|+|...+.++
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3458999999999999999999998876543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00026 Score=59.36 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.++..|+|+|++||||||+++.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999875
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00021 Score=65.92 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||+++|+|..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44689999999999999999999754
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00023 Score=63.41 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+.++.++... ++..|+|+|++|||||||++.|.|.
T Consensus 14 ~l~~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQSM--RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---------C--CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceeccCC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444333 3478999999999999999999874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=61.59 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++||||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00038 Score=69.40 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|+||||||||+++|+|...+.++
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 4568999999999999999999998776654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.001 Score=60.68 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=58.5
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|-+.||... ...+++... ...+|+|++|+|++.+.+.....+ ..+++. +|.++|+||+|+...
T Consensus 3 i~w~PGhm~------ka~~~~~~~----l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMA------KARREVTEK----LKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTT------HHHHHHHHH----GGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH
T ss_pred CcCCchHHH------HHHHHHHHH----HhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH
Confidence 345688642 233444444 445699999999997766543322 233343 499999999998753
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+. +...+...+..++. .|+.++.|+.+|++.+..++.
T Consensus 66 --~~~~~---------~~~~~~~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 66 --AVTQQ---------WKEHFENQGIRSLS------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp --HHHHH---------HHHHHHTTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred --HHHHH---------HHHHHHhcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence 22222 22233333444444 355567888888887776654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00026 Score=60.89 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|++||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=60.54 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999865
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00031 Score=62.50 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~---g~~~~~ 46 (371)
...|+|+|++||||||+++.|+ |...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4689999999999999999999 876543
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=64.82 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++..|+|+|++|||||||++.|.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34567999999999999999999998654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00045 Score=68.93 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~ 49 (371)
.++-.++|+|+||||||||++.|+|...+.++.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 456789999999999999999999987665543
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=55.37 Aligned_cols=69 Identities=7% Similarity=0.013 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
...+.|||||+..+. .....+.. +|.+++++..+ ..+..-..+++.+...-......++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 457899999986531 11222222 48999999887 34434455555655432111123679999999
Q ss_pred CCC
Q 040649 148 DDL 150 (371)
Q Consensus 148 D~~ 150 (371)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00027 Score=77.61 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++|+|++|||||||++.|+|...+.+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999876544
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00068 Score=64.33 Aligned_cols=101 Identities=9% Similarity=0.011 Sum_probs=60.0
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+...+.....+.+++++|+|++++.+ .+...+...++. +|+++|+||+|++... ...+ .+.. .+...
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~~---~piilV~NK~DLl~~~-~~~~-~~~~----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAAD---NPILLVGNKADLLPRS-VKYP-KLLR----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCTT---SCEEEEEECGGGSCTT-CCHH-HHHH----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhCC---CCEEEEEEChhcCCCc-cCHH-HHHH----HHHHH
Confidence 33344444456689999999985432 233344454553 4999999999987541 1111 1111 13334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+...+.+.. +....||+++.|+.+|++.+.....
T Consensus 128 ~~~~g~~~~---~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPV---DVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCS---EEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcc---cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 555554210 1113678889999999999987654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00043 Score=65.48 Aligned_cols=29 Identities=31% Similarity=0.545 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
++..++|+|+||||||||+++|+|...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45689999999999999999999976543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00051 Score=69.36 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~ 49 (371)
.++..++|+|+||+|||||++.|+|...+.++.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 456789999999999999999999988766543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.75 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHH---HhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNS---ILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~---L~g~~~~~~ 47 (371)
..+.++||..||||.||.+. ++|...|..
T Consensus 1646 ~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi 1677 (3245)
T 3vkg_A 1646 QGHALLIGVSGGGKSVLSRFVAWMNGLSIYTI 1677 (3245)
T ss_dssp TCCEEEEESTTSSHHHHHHHHHHHTTCEEECC
T ss_pred CCCeEEecCCCCcHHHHHHHHHHHhCCeeEEE
Confidence 45799999999999999766 567666543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00031 Score=60.13 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++|+|++|+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0024 Score=67.46 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L 39 (371)
+..++|+|++|+||||+++.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999999
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00056 Score=58.74 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+..|+|+|.+||||||+.+.|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=68.25 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..++|+||+|+|||||++.+.+.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 468899999999999999998643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0017 Score=59.80 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=50.0
Q ss_pred hcCCceEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSR-FSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+.++|++++|+|++++ ++... ..++..+.. .. .|+++|+||+|+..+ ..+. .... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~--~~~ilV~NK~DL~~~--~~v~-~~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FK--VEPVIVFNKIDLLNE--EEKK-ELER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TT--CEEEEEECCGGGCCH--HHHH-HHHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CC--CCEEEEEEcccCCCc--cccH-HHHH-----HHHHHHHCC
Confidence 56788999999999865 35442 223333332 12 399999999998754 2111 0111 233333344
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLV 204 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i 204 (371)
..++. .||+++.|+++|++.+
T Consensus 143 ~~~~~------~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLK------VSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEE------CCTTTCTTHHHHHHHT
T ss_pred CeEEE------EECCCCCCHHHHHhhc
Confidence 34443 4666677777777653
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0004 Score=59.02 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..++|+|++||||||+++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999986
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0005 Score=59.09 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++||||||+++.|.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00067 Score=68.56 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~ 49 (371)
.++..++|+|+||+|||||++.|+|...+.++.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 456789999999999999999999987766544
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00056 Score=65.28 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 456899999999999999999999764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00043 Score=57.72 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00036 Score=65.16 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
+..++|+|+||||||||+++|+|...+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 4579999999999999999999876543
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00051 Score=59.98 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..++|+|+||||||||++.|+|...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3557899999999999999999998543
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00062 Score=68.59 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 397 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDE 397 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCC
Confidence 456899999999999999999999876554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00059 Score=64.37 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+...|+|+|+||||||||+++|+|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345899999999999999999998654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00066 Score=62.71 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.++..|+|+|++|||||||++.|.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999999753
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0034 Score=65.00 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|+||+|||||++.|.|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 46899999999999999999988653
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0033 Score=65.43 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..+..+. .++..++|+|++|+|||||++.|.|..
T Consensus 597 vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 33444444 344689999999999999999998754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00087 Score=66.75 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|++|||||||+++|+|...+.++
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3458999999999999999999998876553
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00075 Score=58.19 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999753
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00072 Score=64.21 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..|+|+|+||||||||+++|+|...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0011 Score=66.09 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|||||||+++|+|...+.++
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 341 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 341 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998776553
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00075 Score=59.46 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++..|+|+|++||||||+++.|.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345679999999999999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=66.91 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|+|||||++.|+|...+.++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G 411 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998776553
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0054 Score=56.32 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEE-EAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
..+.++|| ..... .....++.++|++|+|+|++++. +... ..++..+.. .. .|+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~--~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE--LETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT--CEEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC--CCEEEEEeH
Confidence 37889999 22111 11224677899999999998654 3322 233333332 12 399999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcC--CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+|+... ...++ ...+....+ ..++ ..||+++.|+++|+..+.
T Consensus 125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~------~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDE--DDLRK---------VRELEEIYSGLYPIV------KTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCH--HHHHH---------HHHHHHHHTTTSCEE------ECCTTTCTTHHHHHHHHS
T ss_pred HHcCCc--hhHHH---------HHHHHHHHhhhCcEE------EEECCCCcCHHHHHHHhc
Confidence 997644 22211 122222222 2233 367888899999888753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00067 Score=57.11 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|++|+|||||+++|++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999987654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00045 Score=58.15 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..|+|+|++|||||||++.|+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999998654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00058 Score=66.67 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++|+|++|||||||++.|+|...+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence 456899999999999999999998765443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00089 Score=66.23 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|+||||||||+|+|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999998664
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0008 Score=64.82 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..|+|+|+||||||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999998654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+...|+|+|++||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0025 Score=69.96 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++|+|++|||||||++.|+|...+.+
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 456899999999999999999999876554
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0009 Score=63.30 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
..+++|+|++|||||||++.|+|...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999876543
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.011 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999853
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00076 Score=55.29 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|++|+|||||+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999997543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.001 Score=58.03 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.+|+|+|++||||||+++.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=61.07 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
....|+|+|++|||||||++.|.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997643
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=56.58 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++..|+|+|++||||||+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0016 Score=65.78 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
..++|+|++|||||||++.|+|...+.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 46899999999999999999998876654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0017 Score=55.94 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++...+..|+|.|.+||||||+++.|..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 5 DDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred chhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3344457899999999999999999863
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00095 Score=65.32 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
..++|+|++|||||||+++|+|...+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 5789999999999999999998766544
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=56.18 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 040649 22 VVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~ 42 (371)
|+|+||+|||||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999744
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.018 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|++|+|||+++++|..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|+|+|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0022 Score=55.45 Aligned_cols=106 Identities=8% Similarity=-0.042 Sum_probs=57.6
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC---CCCeEEEEEeCC-CCCCCchhhHHHHhcccCCc
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK---IFDYMIVVFTGG-DDLEDNEKTLEDYLGLECPK 167 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~tk~-D~~~~~~~~l~~~l~~~~~~ 167 (371)
.+..++..++.+.|++|||+|.+++-....+..+..|..++... ...|++|+.||. |.... .+..+......
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~L~-- 189 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELH-- 189 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHHTT--
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHHcC--
Confidence 34555566677889999999987431111333333344444322 124888888985 55433 23332222100
Q ss_pred hHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 168 PLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 168 ~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.. .. |.+.+ ...||.++.|+.+-++++...+..
T Consensus 190 -L~~----l~-R~W~I---q~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 190 -LNL----LN-HPWLV---QDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp -GGG----GC-SCEEE---EEEETTTCTTHHHHHHHHTTTTTT
T ss_pred -CcC----CC-CCEEE---EEeECCCCcCHHHHHHHHHHHHHh
Confidence 111 12 32222 235788899999999998765543
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999853
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=53.64 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L 39 (371)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0014 Score=55.11 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..+|+|++|+|||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998753
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=60.57 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
...++|+|++|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.+...|+|+|++|||||||++.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999988654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0012 Score=69.77 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-+++|+|++|||||||++.|+|...+.+
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~P~s 727 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTS 727 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999876544
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=62.66 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|++|+|||||++.+ |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 468999999999999999999 6544
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0016 Score=54.89 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999865
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=53.38 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0023 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0023 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998743
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0015 Score=61.33 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
++-+++|+|++|+|||||++.|+|...+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4568999999999999999999987653
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.-|+|.||||+|||+|++++++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46999999999999999999853
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|+|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0034 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
......|+|+|.+||||||+.+.|.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3345689999999999999999986
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.01 Score=55.37 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|+|++|+||||+++.|+|.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999873
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.002 Score=55.21 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.014 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|.|++|+|||+++++|.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999753
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0075 Score=55.50 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=33.1
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
....+|.+++|+|+..|..... .+-+.|....... .|.++|+||+|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~--~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEAND--IQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTT--CEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCC--CCEEEEEECCccCch
Confidence 3567899999999985544443 3333443222222 388999999998866
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.005 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
..|+|+|++|||||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0038 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|.+||||||+++.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0034 Score=53.05 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|+|.+||||||+++.|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|.+||||||+++.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0019 Score=58.51 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 040649 22 VVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~ 42 (371)
++|+|++|+|||||+++|+|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999974
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.026 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 357999999999999999999854
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0024 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|+|||||++.|++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999854
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+++|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0061 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|.|++|+||||++..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0037 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999854
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0043 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.518 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
....|+|+|+|||||+|....|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999873
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0039 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+..|+|+|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999974
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0037 Score=54.99 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.+.......|+|+|.+||||||+.+.|.
T Consensus 9 p~~~~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 9 PVPESPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp -----CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 33334445789999999999999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0027 Score=57.93 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|+||+|||||++.|+|...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0036 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|+|++||||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.03 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..-|+|.|+||+|||+|+++|++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3457999999999999999999853
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0023 Score=62.10 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
++-+++|+|++|+|||||++.|+|...+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4568999999999999999999987653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.004 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|++||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999987
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0044 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999975
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0036 Score=53.29 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|++||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.00044 Score=60.96 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.++|+|++|||||||+++|+|...+.+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCC
Confidence 468899999999999999998765443
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0027 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 040649 22 VVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++|+|++|+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.005 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.013 Score=56.47 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0044 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0046 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0049 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.086 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+...|+|.|++|+|||+|++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999853
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0047 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999885
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.041 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999874
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0032 Score=56.71 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=46.8
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|+|++|+|++.+++.....+ .. + .+|.++|+||+|+.+. ...+.+ ...+...+.+
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~l-~l----l----~k~~iivlNK~DL~~~--~~~~~~---------~~~~~~~g~~ 77 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYGV-DF----S----RKETIILLNKVDIADE--KTTKKW---------VEFFKKQGKR 77 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTTS-CC----T----TSEEEEEEECGGGSCH--HHHHHH---------HHHHHHTTCC
T ss_pred HHhhCCEEEEEeeCCCCCcCcChHH-Hh----c----CCCcEEEEECccCCCH--HHHHHH---------HHHHHHcCCe
Confidence 3456699999999987665543211 11 1 2499999999998754 322222 2233333333
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+ . .|+.++.|+.+|++.+..
T Consensus 78 v-~------iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 78 V-I------TTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp E-E------ECCTTSCHHHHHHHHCCC
T ss_pred E-E------EECCCCcCHHHHHHHHHH
Confidence 3 3 345556777777766543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.049 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++|+|||+++++|.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0035 Score=58.40 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
..++|+|++|+|||||++.|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998753
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0042 Score=53.58 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++|+|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999987
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.004 Score=59.07 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|+|||||++.|+|.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999863
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0052 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....|+|+|.+||||||+.+.|.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999986
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0054 Score=51.30 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...++|+|++|||||||++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998854
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0036 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.+|+|+|++||||||+++.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0053 Score=58.01 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.++|+|+|||||||++++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999987
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.005 Score=53.20 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0059 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..|+|+|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0039 Score=56.33 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 040649 22 VVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~ 43 (371)
|+|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998643
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.043 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+...|+|.|++|+|||+++.+|..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999975
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=55.04 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
..+..|+|+|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3447899999999999999999874
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0048 Score=54.10 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999974
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0057 Score=52.86 Aligned_cols=20 Identities=40% Similarity=0.787 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0055 Score=53.29 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|++||||||+++.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0055 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|.+||||||+++.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0072 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|.+||||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0063 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0046 Score=65.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|+||||||||++.|+|..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999643
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0062 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++|||||||.+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0062 Score=53.19 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|++||||||+++.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999986
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0072 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.071 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
....|+|+|.+||||||+.+.|+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999974
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0065 Score=52.50 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=38.4
Q ss_pred CcEEEEEeCCCC-CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 68 GQVVNVIDTPGL-FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 68 ~~~i~liDTPG~-~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
...+.|||||+. .+. .....+ ..+|.+|+++..+ ..+-. -..+++.+.... . .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l----~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~--~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALA----DGCDLLVIPSTPD-ALALDALMLTIETLQKLG--N--NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHH----HTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--S--SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHH----HHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--C--CCEEEEEE
Confidence 457899999986 432 011222 2458999988776 22211 233444444421 2 36889999
Q ss_pred CCCCCC
Q 040649 146 GGDDLE 151 (371)
Q Consensus 146 k~D~~~ 151 (371)
+.|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998654
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.002 Score=61.76 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|+|+||+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999988853
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0034 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0063 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999985
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.013 Score=55.76 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|+||||||||...|+
T Consensus 2 ~~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHH
Confidence 3578999999999999999886
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0079 Score=49.55 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.044 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.++|.|++|+||||+++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998643
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0085 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0059 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0082 Score=50.58 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0073 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999986
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0099 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998753
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.011 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999987
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0079 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0085 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.01 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+||||||||||...|+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999743
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.012 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.+..|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0096 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999997
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.011 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 466889999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0053 Score=61.17 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..|+|+|++|||||||++.|.|...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999997654
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0075 Score=54.52 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
-.++..++|+|++|+|||||+..|++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34566899999999999999999886
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0089 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+..|+|+|++||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.01 Score=48.99 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+|+|.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999985
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0089 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.|+|+|++||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.012 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.011 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.013 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.+...++|+|++|+|||+++++|.+..
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 344579999999999999999998643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0096 Score=57.47 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++|+|++|+|||||+++|.+...
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5789999999999999999986543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0097 Score=56.04 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|+|++|+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999874
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0069 Score=61.99 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++..++|+|+||||||||++.|+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 34688999999999999998764
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.2 Score=45.79 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.+++.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 456667799999999999963
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.018 Score=53.88 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|.|++|+||||+++.+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988643
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.02 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...++|.|+||+|||+|+++|+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678889999999999999974
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.014 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...++|.|++|+||||+++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998743
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.069 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++|+|||+|+.+|+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=55.36 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999765
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.015 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998853
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=94.89 E-value=0.016 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 355899999999999999974
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...++|+|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988743
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=58.46 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHH--HhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNS--ILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~--L~g~~ 43 (371)
++..++|+|+||||||||++. +.|..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 45544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...|+|.|++|+|||+++++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999999853
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.02 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+...|+|.|++|+|||++++++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999887643
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=53.92 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
..+|+|+||+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999987
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.022 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|+||||||||...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 5789999999999999999873
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.019 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.018 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|.|++||||||+.+.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.022 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.024 Score=48.63 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999744
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.013 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.019 Score=52.15 Aligned_cols=103 Identities=9% Similarity=-0.039 Sum_probs=55.9
Q ss_pred HHHHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCC---CCCeEEEEEeC-CCCCCCchhhHHHHhcccCC
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKK---IFDYMIVVFTG-GDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~tk-~D~~~~~~~~l~~~l~~~~~ 166 (371)
+...+..++.+.|++|||||.++ ++. ....+..|..++... ...|++|+.|| -|.... .+..+......
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~L~- 274 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELH- 274 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHHcC-
Confidence 34445556677899999999873 444 222222222222110 11388888896 466543 23322222100
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.. .. +.+.+ ...||.+|.|+.+-++++.+.+..
T Consensus 275 --L~~----l~-r~W~I---q~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 275 --LNL----LN-HPWLV---QDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp --GGG----GC-SCEEE---EEEETTTCTTHHHHHHHHHHHSCC
T ss_pred --Ccc----CC-CcEEE---EecccCCCcCHHHHHHHHHHHHHh
Confidence 111 12 22222 235788899999999999877653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.021 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.017 Score=59.02 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCCCcHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATG 36 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTli 36 (371)
++..++|+|+||||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 4568999999999999996
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.024 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++..++|+|++|+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999976664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 371 | ||||
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 1e-23 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 8e-06 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-04 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 5e-04 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 96.4 bits (239), Expect = 1e-23
Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 27/226 (11%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPG 78
T++++G+ G GKS+T NSI+G R S S + + + G +N+IDTPG
Sbjct: 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89
Query: 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSV-RSRFSQEEEAAVHRLQTLFGKKIF 137
L + ++ I + I +L V + R ++ + FGK I+
Sbjct: 90 LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147
Query: 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQV 197
+ IV T + +++ + + L ++++ + +
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFFS-KRSEALLQVVRSGASL----------------KK 190
Query: 198 QQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAK 243
S + V ++N G+ N+ E L W+ +
Sbjct: 191 DAQASDIPVVLIENSGRCNKND-----SDEKVLPNGIAWIPHLVQT 231
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (106), Expect = 8e-06
Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTC-EMKTTVLKDGQVVNVI 74
+ V + G TG+GKS+ N++ G + A + + + E + V
Sbjct: 53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112
Query: 75 DTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK 134
D PG+ ++ + +++ + +RF + + + K
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAISM-MKK 163
Query: 135 KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176
+ V T D NE E + K L++I C
Sbjct: 164 EF----YFVRTKVDSDITNEADGEPQT-FDKEKVLQDIRLNC 200
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 3/140 (2%)
Query: 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80
V L+G GKS + + + A T + DG+ + D PGL
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60
Query: 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140
+ + + + + + I I V+ + + R ++ +++ + + ++ +
Sbjct: 61 EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 141 IVVFTGGDDLEDNEKTLEDY 160
++ D+ + + LE +
Sbjct: 120 QIIVANKMDMPEAAENLEAF 139
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81
V L+G GKS+ ++ A T + + + + + + D PG+ +
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61
Query: 82 SSAESEYVSKEIAKCIGMAKDGIH 105
++E + + E + I + ++
Sbjct: 62 GASEGKGLGLEFLRHIARTRVLLY 85
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 371 | |||
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.8 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.79 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.77 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.76 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.76 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.76 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.72 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.72 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.71 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.7 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.7 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.68 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.67 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.67 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.67 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.66 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.65 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.65 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.65 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.65 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.65 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.64 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.63 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.63 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.63 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.63 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.62 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.61 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.61 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.6 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.6 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.6 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.59 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.57 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.57 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.57 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.57 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.56 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.55 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.55 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.54 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.53 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.51 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.48 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.48 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.46 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.46 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.46 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.44 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.38 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.37 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.34 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.31 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.28 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.19 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.19 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.14 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.09 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.0 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 98.95 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 98.92 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 98.88 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.88 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.82 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.69 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 98.68 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.66 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.65 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 98.58 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 98.28 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 98.27 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 98.11 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 98.11 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 98.1 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 98.1 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.07 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 98.04 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 98.04 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 98.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.96 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.96 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.95 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.9 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.66 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.64 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.56 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.54 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.51 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.5 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.47 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.45 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.4 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.39 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.24 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.24 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.22 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.16 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.11 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.04 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 97.01 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.95 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.91 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.9 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.89 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.87 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.87 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.84 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.78 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.77 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.77 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.76 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.71 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.7 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.69 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.67 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.66 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.66 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.63 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.62 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.6 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.6 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.59 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.59 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.58 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.55 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.47 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.45 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.43 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.43 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.42 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.37 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.36 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.34 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.34 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.33 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.32 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.23 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.16 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.15 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.09 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.05 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.88 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.82 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.78 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.76 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.73 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.71 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.7 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.67 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.6 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.58 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.41 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.26 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.25 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.24 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.23 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.09 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.04 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.95 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.95 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.85 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.79 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.77 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.69 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.6 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.59 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.5 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.48 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.29 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.27 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.23 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.17 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 94.04 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.91 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.55 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.47 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.46 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.42 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.1 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.06 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.8 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.76 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.45 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.36 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 92.26 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.24 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.19 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.17 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.04 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.02 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.74 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 91.53 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.43 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 91.42 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.42 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.36 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.3 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.12 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.02 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.75 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 90.6 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.59 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.49 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 89.79 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 88.85 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.59 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.07 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 88.02 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.91 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.91 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 87.53 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 85.38 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.95 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 81.48 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 81.17 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.02 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.83 |
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.88 E-value=1.5e-22 Score=182.59 Aligned_cols=197 Identities=20% Similarity=0.311 Sum_probs=142.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|.+|+|||||+|+|+|...+.+.. ..++|..+..+.... .+..+.||||||++++..........+..+
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~-~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~ 107 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 107 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhCCCceeecC-CCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence 356899999999999999999999999876543 346677777776666 889999999999998766655555444443
Q ss_pred HhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
. ...++|+++||++++ .+++..+...+..+...||..+++++++|+||+|...++..++++|+.. ....+..++..
T Consensus 108 ~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~~ 184 (257)
T d1h65a_ 108 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS 184 (257)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred H--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHHH
Confidence 3 345789999999886 4799999999999999999999999999999999987666677877764 23345555655
Q ss_pred cCCc----------eEeecCcch--h--hH-----hhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 176 CDNR----------WVLFDNKTK--Y--EA-----KRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 176 ~~~r----------~~~f~~~~~--~--sa-----~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
|..+ +..+.|... . .. .....+..++..+.+++..+....+..
T Consensus 185 ~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~ 246 (257)
T d1h65a_ 185 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 246 (257)
T ss_dssp HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred HhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCcccc
Confidence 5422 223322210 0 00 011346778888888877666654444
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=7e-21 Score=161.80 Aligned_cols=165 Identities=22% Similarity=0.213 Sum_probs=115.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|+|||||+|+|+|....... ...++|.......... .+..+.++||||+....... ...+......
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~ 80 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDAL---GEFMDQEVYE 80 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHH---HHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceeee-eeeeeeeccccccccccccc---chhccccccc
Confidence 47999999999999999999998753322 2233444444444444 77899999999998754332 2333444445
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-C
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-N 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-~ 178 (371)
+...+|++|||+|++.+++..+..++..++...+. .|+++|+||+|...... ... ..+....+ .
T Consensus 81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~---~piilv~NK~Dl~~~~~----~~~--------~~~~~~~~~~ 145 (178)
T d1wf3a1 81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGK---VPILLVGNKLDAAKYPE----EAM--------KAYHELLPEA 145 (178)
T ss_dssp HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTT---SCEEEEEECGGGCSSHH----HHH--------HHHHHTSTTS
T ss_pred ccccccceeeeechhhhhcccccchhhheeccccc---hhhhhhhcccccccCHH----HHH--------HHHHhhcccC
Confidence 56788999999999988888887777777765443 39999999999875421 111 11222222 2
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+++ .||+++.|+++|++.|.+.+++
T Consensus 146 ~~~~------iSA~~~~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 146 EPRM------LSALDERQVAELKADLLALMPE 171 (178)
T ss_dssp EEEE------CCTTCHHHHHHHHHHHHTTCCB
T ss_pred ceEE------EecCCCCCHHHHHHHHHHhCCC
Confidence 2332 5888999999999999998876
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=7.4e-20 Score=155.79 Aligned_cols=167 Identities=17% Similarity=0.180 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH----HHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE----YVSKEIAKC 96 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~----~~~~ei~~~ 96 (371)
+|+|+|+||+|||||+|+|+|..... ...+++|..... +. ...+.++||||++....... .....+..+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~--~~~~g~T~~~~~--~~---~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIE--IE---WKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 74 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEE--EE---ETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee--eCCCCEeecccc--cc---cccceecccCCceeccccccccccccchhhhhh
Confidence 69999999999999999999987632 223445544322 22 23467899999876544332 233445555
Q ss_pred HhhhcCCceEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC
Q 040649 97 IGMAKDGIHAVLLVFSVRS-----------RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC 165 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~ 165 (371)
.......+|++++|+|+.. .+...+...+..+... + .|+++|+||+|.+.........+...
T Consensus 75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~----~p~iiv~NK~D~~~~~~~~~~~~~~~-- 147 (184)
T d2cxxa1 75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-D----IPTIVAVNKLDKIKNVQEVINFLAEK-- 147 (184)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-T----CCEEEEEECGGGCSCHHHHHHHHHHH--
T ss_pred hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-C----CCEEEEEeeeehhhhHHHHHHHHHHH--
Confidence 5566678899999999852 3455556666666543 2 39999999999886532222111110
Q ss_pred CchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 166 PKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 166 ~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+...+......++ +.||+++.|+++|++.|.+++++
T Consensus 148 ---~~~~~~~~~~~~~------~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 148 ---FEVPLSEIDKVFI------PISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp ---HTCCGGGHHHHEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---hcccccccCCeEE------EEECCCCCCHHHHHHHHHHHccC
Confidence 0000000011122 36888999999999999988875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.80 E-value=1.9e-19 Score=153.00 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
.|+|+|++|||||||+|+|+|...... ...+.|+...........+..+.++||||+.............+.. .
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~----~ 76 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR----H 76 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHH----H
Confidence 499999999999999999999876332 2233444444433344466789999999987643221111122222 3
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
...++++++++|..............++..........|+++|+||+|.... ..... +...+...+.++
T Consensus 77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~--~~~~~---------~~~~~~~~~~~~ 145 (180)
T d1udxa2 77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGLAV 145 (180)
T ss_dssp HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTSCE
T ss_pred HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH--HHHHH---------HHHHHHhcCCeE
Confidence 4566999999998743322223333333322111122499999999998765 33332 223333334444
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+. .||+++.|+++|++.|..+++...
T Consensus 146 ~~------iSA~tg~gid~L~~~i~~~l~~~~ 171 (180)
T d1udxa2 146 LP------VSALTGAGLPALKEALHALVRSTP 171 (180)
T ss_dssp EE------CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred EE------EEcCCCCCHHHHHHHHHHHHhhcC
Confidence 44 688899999999999999987643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=1.5e-18 Score=149.38 Aligned_cols=172 Identities=16% Similarity=0.257 Sum_probs=111.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH--HHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY--VSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~--~~~ei 93 (371)
..+.++|+|+|++|||||||+|+|+|.............|..... .. ....+.++|+||.+........ ....+
T Consensus 20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 95 (195)
T d1svia_ 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YI--INDELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EE--ETTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc--cc--ccccceEEEEEeeccccccccccchhhhH
Confidence 334468999999999999999999997642221222222322222 11 2345678999887765443322 22333
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
..........+|++++|+|++.+++..+...+..+... + .|+++|+||+|.... ..+.++... +...+
T Consensus 96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-~----~piivv~NK~D~~~~--~~~~~~~~~-----~~~~l 163 (195)
T d1svia_ 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-G----IPVIVIATKADKIPK--GKWDKHAKV-----VRQTL 163 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHH
T ss_pred Hhhhhccccchhhhhhhhhccccccccccccccccccc-c----CcceechhhccccCH--HHHHHHHHH-----HHHHh
Confidence 44445566788999999999988999999888888764 2 399999999998765 555555443 44444
Q ss_pred Hh-cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 174 QL-CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~-~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.. ....+++ .||.++.|+++|++.|.+++.
T Consensus 164 ~~~~~~~~~~------~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 164 NIDPEDELIL------FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TCCTTSEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred cccCCCCEEE------EeCCCCCCHHHHHHHHHHHhC
Confidence 32 2223333 577889999999999988764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=8.6e-19 Score=149.50 Aligned_cols=173 Identities=19% Similarity=0.269 Sum_probs=108.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH-----HHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY-----VSKE 92 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~-----~~~e 92 (371)
...+|+|+|++|+|||||+|+|+|........ ..++|..+....+.+ ++..+.++||||+......... ....
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccccccccccccccchhHH
Confidence 35899999999999999999999987533222 133343444444444 7889999999998642111000 0012
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+... ...+|++++|+|++.++......++..+... + .|+|+|+||+|........+..+... +...
T Consensus 85 ~~~~----~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-~----~~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~~ 150 (186)
T d1mkya2 85 VVDS----IEKADVVVIVLDATQGITRQDQRMAGLMERR-G----RASVVVFNKWDLVVHREKRYDEFTKL-----FREK 150 (186)
T ss_dssp HHHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred HHHH----HhcCCEEEEeecccccchhhHHHHHHHHHHc-C----CceeeeccchhhhcchhhhhhhHHHH-----HHHH
Confidence 2222 2346999999999988888887777777653 2 39999999999876543334433322 2222
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..++ +.+....||+++.|+++|++.|...+..+
T Consensus 151 ~~~~~-----~~~i~~vSa~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 151 LYFID-----YSPLIFTSADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp CGGGT-----TSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcccC-----CCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 22222 11223468899999999999998887754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.76 E-value=3.3e-18 Score=145.34 Aligned_cols=167 Identities=19% Similarity=0.211 Sum_probs=105.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+|+++|++++|||||+|+|+|........ ...+.|.......+.+ .+..+.++||||..+ +
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------~ 72 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------L 72 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------H
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccccc-----------c
Confidence 4689999999999999999999754321110 0112222223333333 778899999999432 3
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+...+|++++|+|++.+....+...+..+... + .|+++|+||+|.... ......... ++.++
T Consensus 73 ~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-~----~p~iiv~NKiD~~~~--~~~~~~~~~-----~~~~~ 140 (179)
T d1wb1a4 73 IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAGT--EEIKRTEMI-----MKSIL 140 (179)
T ss_dssp HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSCH--HHHHHHHHH-----HHHHH
T ss_pred ccchhhhhhhccccccccccccccchhhhhhhhhhhhc-C----CcceeccccccccCH--HHHHHHHHH-----HHHHH
Confidence 33344456678999999999988888777777666543 2 399999999998865 333322211 33344
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...... ...+..+.||+++.|+++|++.|...+++.
T Consensus 141 ~~~~~~--~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~ 176 (179)
T d1wb1a4 141 QSTHNL--KNSSIIPISAKTGFGVDELKNLIITTLNNA 176 (179)
T ss_dssp HHSSSG--GGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred HHhhcC--CCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence 332210 011222378899999999999999888763
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.9e-19 Score=146.46 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=104.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+.+|+++|++|+|||||+|+|+|........ .++.+.......+.. .+..+.++||||+.+...... ........
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~ 75 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVE---RIGIERAW 75 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHH---HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeec-ccccccceEeeeeec-cCceeeeccccccccccccch---hHHHHHHH
Confidence 3689999999999999999999987633222 233343333334444 778999999999988643322 22233334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.++..+|++++++|...+.+......+..+....... .|+++|+||+|+.... ..+ . ...+.
T Consensus 76 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~~-~~~----~-----------~~~~~ 137 (161)
T d2gj8a1 76 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGET-LGM----S-----------EVNGH 137 (161)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCCC-CEE----E-----------EETTE
T ss_pred HHHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhhH-HHH----H-----------HhCCC
Confidence 4566789999999998665555555544444444433 4999999999965441 000 0 00112
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+++ ..||+++.|+++|++.|.+
T Consensus 138 ~~~------~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 138 ALI------RLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp EEE------ECCTTTCTTHHHHHHHHHH
T ss_pred cEE------EEECCCCCCHHHHHHHHHh
Confidence 222 3688999999999998865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=2.4e-18 Score=144.83 Aligned_cols=166 Identities=19% Similarity=0.234 Sum_probs=104.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|++|+|||||+|+|+|....... ...+.|.......... ....+.++||||+.+...... ...........
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~ 77 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDII--SQKMKEVTLNM 77 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCC--CHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccc-cccccccccccceeeeecccc--ccccccccccc
Confidence 6999999999999999999997753221 1233343333333333 667889999999887543211 11122223334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
...+|+++++++.+.++...+..++..+... + .|+++|+||+|.... ...+ . ...+.......+
T Consensus 78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-~----~pviiv~NK~Dl~~~--~~~~--~-------~~~~~~~~~~~~ 141 (171)
T d1mkya1 78 IREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE--FERE--V-------KPELYSLGFGEP 141 (171)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH--HHHH--T-------HHHHGGGSSCSC
T ss_pred cccCcEEEEeecccccccccccccccccccc-c----ccccccchhhhhhhh--hhhH--H-------HHHHHhcCCCCe
Confidence 5677999999999988888888887777753 2 399999999997633 1111 1 122222212222
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...||+++.|+++|++.|.+.+++..
T Consensus 142 ------i~iSAk~g~gid~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 142 ------IPVSAEHNINLDTMLETIIKKLEEKG 167 (171)
T ss_dssp ------EECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred ------EEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 33688999999999999998887653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.72 E-value=5e-17 Score=139.68 Aligned_cols=169 Identities=17% Similarity=0.147 Sum_probs=111.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC------ccc--------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR------AFK--------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~------~~~--------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
|..+|+++|+.++|||||+++|++.. .+. ......+.|.......+.+ .++.++++||||..+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~-- 78 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH--
Confidence 55899999999999999999998521 000 0011135566655555655 788999999999543
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL 163 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~ 163 (371)
+...+......+|++|+|+|+..++..++...+..+... |. +|+|+++||+|...+. ..++....+
T Consensus 79 ---------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~---~~iIv~iNK~D~~~~~-~~~~~i~~~ 144 (196)
T d1d2ea3 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQDS-EMVELVELE 144 (196)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred ---------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cC---CcEEEEEecccccccH-HHHHHHHHH
Confidence 333344456677999999999999998888877777664 32 3899999999987541 233333333
Q ss_pred cCCchHHHHHHhcCCceEeecCcchhhHhhH----------HhHHHHHHHHHHHHh
Q 040649 164 ECPKPLKEILQLCDNRWVLFDNKTKYEAKRT----------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 164 ~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~----------~~i~~Ll~~i~~~~~ 209 (371)
++.++..++-..- --+....|+.++ .++..|++.|...++
T Consensus 145 -----i~~~l~~~~~~~~-~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 145 -----IRELLTEFGYKGE-ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp -----HHHHHHHTTSCTT-TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHhCCCcc-cCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 5566654432100 000123466665 688899988877654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=4.1e-18 Score=145.22 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=102.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
.|+|+|++|+|||||+|+|+|.... .....+.|+........+.++..+.++||||+.............+...+..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~--~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~- 79 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER- 79 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCc--eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHH-
Confidence 5999999999999999999998762 2333445555555445554677899999999753222222223334443333
Q ss_pred cCCceEEEEEEeCC--CCCCHHHHH-HHHHHHHHhCCC-CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 101 KDGIHAVLLVFSVR--SRFSQEEEA-AVHRLQTLFGKK-IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~--~~~~~~~~~-~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
++.++++++.. ......+.. ........+... ..+|+++|+||+|.... ... +..+....
T Consensus 80 ---~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~-----------~~~~~~~~ 143 (185)
T d1lnza2 80 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AEN-----------LEAFKEKL 143 (185)
T ss_dssp ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHH-----------HHHHHHHC
T ss_pred ---hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHH-----------HHHHHHHh
Confidence 37787777655 223322222 222222322222 23589999999997743 111 12222222
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+... +....||+++.|+++|++.|.+.+++.+.
T Consensus 144 ~~~~----~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~ 176 (185)
T d1lnza2 144 TDDY----PVFPISAVTREGLRELLFEVANQLENTPE 176 (185)
T ss_dssp CSCC----CBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred ccCC----cEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 2211 11346888999999999999999876543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=2.3e-17 Score=145.49 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE------------------EeEEeeCCcEEEEEeCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM------------------KTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~------------------~~~~~~~~~~i~liDTPG~~~ 81 (371)
++|+|+|++++|||||+|+|++...... ..+++|..... ..+.+ .+..++++||||+.+
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~ 82 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA 82 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred CEEEEEeCCCccHHHHHHHHHhhcchhe--ecCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence 4599999999999999999997543111 11111111000 01112 556899999999876
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.... ...+...+|++|+|+|+..++...+...+..+... . .|+|+|+||+|....
T Consensus 83 f~~~-----------~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~--~p~iivlNK~D~~~~ 137 (227)
T d1g7sa4 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIHG 137 (227)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSTT
T ss_pred cccc-----------chhcccccceEEEEEecccCcccchhHHHHHhhcC---C--CeEEEEEECccCCCc
Confidence 4222 22345678999999999989999999888888764 2 399999999998754
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=1.8e-17 Score=137.50 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~ 97 (371)
.+|+|+|++|+|||||+|+|+|........ .++.|.......... .+..+.++||||+...... ...........
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~- 77 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE- 77 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeec-cccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence 479999999999999999999977532221 223333333333444 7788999999998653221 11111222222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
+..+|++++|+|++++....+..+...+. . .++++++||+|.... ...++. ...+. ..
T Consensus 78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~----~---~~~i~~~~k~d~~~~--~~~~~~---------~~~~~-~~ 135 (160)
T d1xzpa2 78 ---IEKADIVLFVLDASSPLDEEDRKILERIK----N---KRYLVVINKVDVVEK--INEEEI---------KNKLG-TD 135 (160)
T ss_dssp ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT----T---SSEEEEEEECSSCCC--CCHHHH---------HHHHT-CS
T ss_pred ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc----c---ccceeeeeeccccch--hhhHHH---------HHHhC-CC
Confidence 33459999999999888777655544332 1 389999999998865 222221 11121 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+++ ..||+++.|+++|++.|.+
T Consensus 136 ~~~~------~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 136 RHMV------KISALKGEGLEKLEESIYR 158 (160)
T ss_dssp TTEE------EEEGGGTCCHHHHHHHHHH
T ss_pred CcEE------EEECCCCCCHHHHHHHHHh
Confidence 2233 3688999999999988753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=7.4e-17 Score=135.38 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|.+|+|||||++++++........... +........... ....+.++||||... +.....
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~wDt~G~e~-----------~~~~~~ 72 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIYRNDKRIKLQIWDTAGQER-----------YRTITT 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCccccccc--ccceeeEEEEeecceEEEEEEECCCchh-----------hHHHHH
Confidence 689999999999999999998765433222122 222222223221 123688999999432 223344
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++|+|+|++++-+-.. ..++..+....... .|+++|.||+|.......+.+ ....+....+
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~v~~~---------~~~~~~~~~~ 141 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE---------RGRQLADHLG 141 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHHHT
T ss_pred HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc--ceEEEEEeecccccccccchh---------hhHHHHHHcC
Confidence 56788999999999984322222 22333344433333 489999999996543111111 1233444445
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+++. .||+++.|+.++++.+.+.+.
T Consensus 142 ~~~~e------~Sak~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 142 FEFFE------ASAKDNINVKQTFERLVDVIC 167 (169)
T ss_dssp CEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 55443 678889999999998887654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=9.4e-17 Score=139.01 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC---ccccCCC------------CCccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR---AFKASAG------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~---~~~~~~~------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
|..+|+++|+.++|||||+++|++.. ....... ..++|.......+.+ ++..++||||||+.++
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY 80 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG
T ss_pred CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchhh
Confidence 55899999999999999999997321 1000000 015666666666666 8899999999998763
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
..++.. +...+|++|+|+|+..++...+...+..+... |- +++++++||+|..+. ...++....
T Consensus 81 -------~~~~~~----~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-gi---~~iiv~iNK~D~~~~-~~~~~~~~~ 144 (204)
T d2c78a3 81 -------IKNMIT----GAAQMDGAILVVSAADGPMPQTREHILLARQV-GV---PYIVVFMNKVDMVDD-PELLDLVEM 144 (204)
T ss_dssp -------HHHHHH----HHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCCC-HHHHHHHHH
T ss_pred -------HHHHHH----HHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEEecccCCC-HHHHHHHHH
Confidence 233333 34566999999999999999988888887764 32 268888999998764 233444444
Q ss_pred ccCCchHHHHHHhc
Q 040649 163 LECPKPLKEILQLC 176 (371)
Q Consensus 163 ~~~~~~l~~~~~~~ 176 (371)
. ++.++...
T Consensus 145 ~-----i~~~l~~~ 153 (204)
T d2c78a3 145 E-----VRDLLNQY 153 (204)
T ss_dssp H-----HHHHHHHT
T ss_pred H-----HHHHHHhc
Confidence 3 55555543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.68 E-value=7.8e-17 Score=134.48 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=99.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|.|.|.... . ..+|.......+.. .+..+.++||||... +.....
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~~ 64 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVD-T----ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWR 64 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCS-S----CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCC-c----ccceEeeeeeeccc-cccceeeeecCcchh-----------hhhHHH
Confidence 478999999999999999999987642 1 22333344444444 778999999999421 333445
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+..+|++++|+|+.+..+..+ ....+...+.. ....|+++|.||+|.... ....+.... + .+...
T Consensus 65 ~~~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~-----~--~~~~~ 133 (165)
T d1ksha_ 65 NYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEA-----L--ELDSI 133 (165)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----T--TGGGC
T ss_pred hhhhhhhcceeeeecccchhHHH--HHHhhhhhhhhcccCCCceEEEEeccccccc--cCHHHHHHH-----H--Hhhhh
Confidence 66788999999999884433222 12222222211 122499999999997654 233222111 0 01112
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+.+ ...||+++.|+.+++++|.+.+.
T Consensus 134 ~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 134 RSHHWRI---QGCSAVTGEDLLPGIDWLLDDIS 163 (165)
T ss_dssp CSSCEEE---EECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCCEE---EEEECCCCCCHHHHHHHHHHHHH
Confidence 2222221 23688899999999998876554
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.6e-16 Score=132.18 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++....... ....+.......+.. .+. .+.++||||... +....
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~--~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~ 71 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT 71 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 68999999999999999999976653321 222233333333443 343 577899999432 33444
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|.+++-+-.. ...+..+....... .|+++|.||+|.......+.+ ....+....
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~~~v~~~---------~~~~~~~~~ 140 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ---------RAEEFSEAQ 140 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH---------HHHHHHHHH
T ss_pred HHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccccchhhh---------HHHHHHHhC
Confidence 566789999999999884332221 33444444443433 399999999996533111121 133344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH-HHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN-AVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~-~~~~~ 210 (371)
+.+++. .||+++.||++++..+. .++.+
T Consensus 141 ~~~~~~------~SAktg~gV~e~f~~l~~~l~~~ 169 (171)
T d2ew1a1 141 DMYYLE------TSAKESDNVEKLFLDLACRLISE 169 (171)
T ss_dssp TCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCEEEE------EccCCCCCHHHHHHHHHHHHHHh
Confidence 544443 68889999999977554 55543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.67 E-value=1.7e-16 Score=136.48 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEe----------------------eCCcEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVL----------------------KDGQVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~----------------------~~~~~i~l 73 (371)
.+..+|+++|+.++|||||+|+|+|....... ....+.|....+....+ .....+++
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 45678999999999999999999985421110 00111221111110000 01235899
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+||||..+ +...+......+|++++|+|+..+. .......+..+... +. .++++++||+|..+.
T Consensus 83 iDtPGh~~-----------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d~ 147 (195)
T d1kk1a3 83 IDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK 147 (195)
T ss_dssp EECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred eccchhhh-----------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchhh
Confidence 99999432 3333444455679999999999765 44445555555543 33 278999999998754
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
......... +...+..+....++ ..+.||++|.|+++|++.|.+.++
T Consensus 148 --~~~~~~~~~-----~~~~~~~~~~~~~~---iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 148 --EKALENYRQ-----IKEFIEGTVAENAP---IIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCC---EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred --HHHHHHHHH-----HHHHhccccCCCCe---EEEEECCCCCCHHHHHHHHHHHCc
Confidence 322222221 45555543322111 134689999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.67 E-value=1.8e-16 Score=133.59 Aligned_cols=163 Identities=19% Similarity=0.157 Sum_probs=98.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
.++.....+|+++|++|+|||||+|.|.+....... .+.......... .+..+.++|+||...
T Consensus 10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~----------- 72 (176)
T d1fzqa_ 10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRK----------- 72 (176)
T ss_dssp SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGG-----------
T ss_pred hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeecccccc-----------
Confidence 345556789999999999999999999987652211 111122333444 677899999999543
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
+.......+..+|++++|+|++++.+..+. ...+...... ....|+++|.||+|+... ......... +.
T Consensus 73 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~--~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~~~~~~~~-----~~ 143 (176)
T d1fzqa_ 73 IRPYWRSYFENTDILIYVIDSADRKRFEET--GQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-----LN 143 (176)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTCGGGHHHH--HHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT
T ss_pred chhHHHHHhhccceeEEeeccccccchhhh--hhhhhhhhhhhccCCCeEEEEEEecccccc--ccHHHHHHH-----HH
Confidence 222334456778999999999854433321 1222222211 112499999999998765 222221111 00
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+..+..+.+.| ...||+++.|+++++++|.+
T Consensus 144 --~~~~~~~~~~~---~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 144 --LHTIRDRVWQI---QSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp --GGGCCSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred --HHHHHhcCCEE---EEEeCCCCCCHHHHHHHHHh
Confidence 11222232222 23688899999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.66 E-value=1.8e-16 Score=137.45 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-cc-----ceeEEEEeE----------------------EeeCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-AI-----TKTCEMKTT----------------------VLKDG 68 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-~~-----t~~~~~~~~----------------------~~~~~ 68 (371)
.|..+|+++|+.++|||||+++|+|........... .. ......... .....
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL 85 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence 344899999999999999999999844311100000 00 000000000 00012
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+.+++|||||..+ +...+..+...+|++|+|+|+..++ .......+..+.. +|. +|+|+++||+
T Consensus 86 r~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~i---~~iIV~vNK~ 150 (205)
T d2qn6a3 86 RRISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGV---KNLIIVQNKV 150 (205)
T ss_dssp EEEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECG
T ss_pred EEEEEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cCC---ceeeeccccC
Confidence 4689999999543 3333444556789999999999876 4445555555544 343 3899999999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|+... ......... +...+......-++ ..+.||+++.|+++|++.|...++.
T Consensus 151 Dl~~~--~~~~~~~~~-----~~~~l~~~~~~~~p---~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 151 DVVSK--EEALSQYRQ-----IKQFTKGTWAENVP---IIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp GGSCH--HHHHHHHHH-----HHHHHTTSTTTTCC---EEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCccc--hHHHHHHHH-----HHHHhccccCCCCe---EEEEeCCCCCChHHHHHHHHhhCCC
Confidence 98755 222221111 33444332221111 1347899999999999999887764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.1e-16 Score=130.71 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||+|++++........ +.++.......... ++ ..+.++||||.... ....
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~ 66 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERF-----------RSLI 66 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGG-----------GGGH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeeeccceeecc-CCCceeeeecccCCcchh-----------ccch
Confidence 379999999999999999999776533211 22222222223333 33 36789999996542 1122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|.+++.+-.. ..++..+....+... |+++|.||+|.........+ ....+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 135 (164)
T d1yzqa1 67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIE---------EGERKAKEL 135 (164)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCc--eEEEEecccchhhhhhhhHH---------HHHHHHHHc
Confidence 334667899999999985433332 344444555554444 99999999997543212222 133444544
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++ ..||+++.||++++..|...++
T Consensus 136 ~~~~~------e~SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 136 NVMFI------ETSAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp TCEEE------ECCTTTCTTHHHHHHHHHHHSC
T ss_pred CCEEE------EecCCCCcCHHHHHHHHHHhhC
Confidence 54444 3688899999999999887654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.65 E-value=3e-16 Score=132.09 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=98.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+...+|+++|.+|||||||++.+++...... ..|.......... ....+.++||||... ....
T Consensus 10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~g~~~-----------~~~~ 72 (173)
T d1e0sa_ 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPL 72 (173)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-----EEETTEEEEEEEE-TTEEEEEEEESCCGG-----------GHHH
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-----cceeeeeEEEeec-cceeeEEecCCCcch-----------hhhH
Confidence 3458999999999999999999987664322 1222233333333 667899999999654 2234
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~ 173 (371)
....+..+|++++|+|++.+-+-. ....++...... ....|+++|+||+|..... ...+...+. +
T Consensus 73 ~~~~~~~~~~ii~v~D~s~~~~~~--~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~----------~ 140 (173)
T d1e0sa_ 73 WRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLG----------L 140 (173)
T ss_dssp HGGGTTTCCEEEEEEETTCGGGHH--HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTT----------G
T ss_pred HHhhhcccceEEEEEecccchhHH--HHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHH----------H
Confidence 455678899999999998432222 122233332221 1224999999999976541 111221111 1
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+..+-+.+ ...||+++.|+.+++++|.+.+
T Consensus 141 ~~~~~~~~~~---~e~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 141 TRIRDRNWYV---QPSCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp GGCCSSCEEE---EECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHhCCCEE---EEeeCCCCcCHHHHHHHHHHhc
Confidence 2222222222 2468999999999999987643
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1.7e-16 Score=132.34 Aligned_cols=156 Identities=18% Similarity=0.111 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||+|.+++.........+.+.. ........ .+ ..+.++||||....... .
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~--~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~-----------~ 68 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD--FLERQIQV-NDEDVRLMLWDTAGQEEFDAI-----------T 68 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS--EEEEEEEE-TTEEEEEEEECCTTGGGTTCC-----------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc--cceeeeee-cCceeeeeeeccCCccchhhh-----------h
Confidence 689999999999999999998655432211111111 22222222 33 36789999996653222 1
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+-.. ..++..+....+. .|+++|.||+|+......+.+ ..+.+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~iilVgnK~Dl~~~~~v~~~---------~~~~~~~~~ 136 (164)
T d1z2aa1 69 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKNE---------EAEGLAKRL 136 (164)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCHH---------HHHHHHHHH
T ss_pred hhhhccCceEEEEEeccchhhhhhcccccccccccCCC---ceEEEeeccCCcccceeeeeh---------hhHHHHHHc
Confidence 223567899999999985433222 2344555555443 399999999997643111111 134455555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+++. .||+++.|++++++.+.+.
T Consensus 137 ~~~~~e------~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 137 KLRFYR------TSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp TCEEEE------CBTTTTBSSHHHHHHHHHH
T ss_pred CCEEEE------eccCCCcCHHHHHHHHHHH
Confidence 555443 6888899999999887653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.2e-16 Score=129.53 Aligned_cols=157 Identities=21% Similarity=0.122 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+.+...... .+. +.......+.. ++ ..+.++||||.... ....
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~--~~~--~~~~~~~~i~~-~~~~~~l~i~D~~g~e~~-----------~~~~ 65 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPE--AEA--AGHTYDRSIVV-DGEEASLMVYDIWEQDGG-----------RWLP 65 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCc--CCe--eeeeecceeec-cccccceeeeeccccccc-----------ceec
Confidence 5799999999999999999998764221 111 11111122233 33 47789999995432 1223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++|+|+|++++-+-.. ..++..+....+. ...|+++|.||+|+......+.. ....+....
T Consensus 66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~v~~~---------~~~~~~~~~ 135 (168)
T d2gjsa1 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRSREVSVD---------EGRACAVVF 135 (168)
T ss_dssp HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHH
T ss_pred ccchhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhhcchhHH---------HHHHHHHhc
Confidence 345678899999999985433332 2333444443332 22499999999997643111111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+.+++. .||+++.|+.+++..+.+.+
T Consensus 136 ~~~~~e------~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 136 DCKFIE------TSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp TSEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCcCHHHHHHHHHHHH
Confidence 554443 58888999999999876544
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1.1e-15 Score=145.32 Aligned_cols=175 Identities=17% Similarity=0.099 Sum_probs=106.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCc---cceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSA---ITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+|+|.+|+|||||+|+|+|......+....+ +|... ..+..+++..+.+|||||++......+...
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~---- 128 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTNFPPDTYL---- 128 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSSCCHHHHH----
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCeEEEEeCCCcccccccHHHHH----
Confidence 358999999999999999999999765433332222 23322 223344566789999999987654433222
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-------hhHHHHhcccCCc
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-------KTLEDYLGLECPK 167 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-------~~l~~~l~~~~~~ 167 (371)
.. .....+|++|++.|. +++..+...+..+... + +|+++|+||+|...... ...+..+.. ...
T Consensus 129 ~~--~~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~-~----k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~ 198 (400)
T d1tq4a_ 129 EK--MKFYEYDFFIIISAT--RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRL 198 (400)
T ss_dssp HH--TTGGGCSEEEEEESS--CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHH
T ss_pred HH--hhhhcceEEEEecCC--CCCHHHHHHHHHHHHc-C----CCEEEEEeCcccccchhhhcccccccHHHHHHH-HHH
Confidence 11 123356888887764 5899999888888764 3 49999999999541100 011111111 001
Q ss_pred hHHHHHHh---cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 168 PLKEILQL---CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 168 ~l~~~~~~---~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.....+.. +..+++++++.... ..++..|.+.+...++...
T Consensus 199 ~~~~~l~~~~~~~~~vflvS~~~~~----~~d~~~L~~~l~~~L~~~~ 242 (400)
T d1tq4a_ 199 NCVNTFRENGIAEPPIFLLSNKNVC----HYDFPVLMDKLISDLPIYK 242 (400)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCTT----STTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHcCCCCCCEEEecCCccc----ccCHHHHHHHHHHHhHHHH
Confidence 12223332 23556666654322 3689999999888877643
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.8e-16 Score=129.87 Aligned_cols=162 Identities=18% Similarity=0.183 Sum_probs=97.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||++++++........ .|...........++. .+.++||||..... ..
T Consensus 2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~----~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-----------~~ 66 (171)
T d2erxa1 2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYI----PTVEDTYRQVISCDKSICTLQITDTTGSHQFP-----------AM 66 (171)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCC----CCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-----------HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCccC----cceeeccccceeeccccceecccccccccccc-----------cc
Confidence 3689999999999999999999866432211 1222222211122443 56789999976531 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-.. ..++..+....+.....|+++|.||+|.......+.+ ....+...
T Consensus 67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~---------e~~~~~~~ 137 (171)
T d2erxa1 67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS---------EAEALART 137 (171)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHH---------HHHHHHHH
Confidence 1223445699999999984333222 3344445444343333599999999996533111111 13344454
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+.+++ ..||+++.|+++++..|.+++..
T Consensus 138 ~~~~~~------e~Sak~~~~v~e~f~~l~~~~~~ 166 (171)
T d2erxa1 138 WKCAFM------ETSAKLNHNVKELFQELLNLEKR 166 (171)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHTCCS
T ss_pred cCCeEE------EEcCCCCcCHHHHHHHHHHHHHH
Confidence 454444 36888999999999988876553
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=8.5e-16 Score=131.80 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|.+|||||||++.+++...........+.+ .....+.. .....+.+|||||...... ...
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~Dt~G~e~~~~-----------~~~ 73 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD--FKIKTVELDGKTVKLQIWDTAGQERFRT-----------ITS 73 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCC--EEEEEEEETTEEEEEEEECCTTTTTTTC-----------CCG
T ss_pred EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCcccee--EEEEEEEEeeEEEEEEEEECCCchhhHH-----------HHH
Confidence 689999999999999999998766433222222222 22222333 1234788899999654322 123
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++|+|+|++.+.+... ......+....... .|+++|.||+|.........+. ........+
T Consensus 74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 142 (194)
T d2bcgy1 74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFADANK 142 (194)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHHHHTT
T ss_pred HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccccchhHHH---------HhhhhhccC
Confidence 45678899999999985433332 22333344444333 4999999999977542222221 222333334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..++. .||+++.|+.+++..+.+.+..
T Consensus 143 ~~~~e------~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 143 MPFLE------TSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp CCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred cceEE------EecCcCccHHHHHHHHHHHHHH
Confidence 44433 6888899999999988766554
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3.5e-15 Score=126.13 Aligned_cols=175 Identities=12% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....++|+|+|++|+|||||+|+|+|......... .+.+. ..........+......++++.................
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK-TPGRT-QLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 90 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecc-cccce-eeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence 44568999999999999999999999775332211 12222 22222222245555555555554433333322233333
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.........+.++++.+...+........+..+.... .++++++||+|.... ......... +.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~~~--~~~~~~~~~-----~~~~l~~ 158 (188)
T d1puia_ 91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSN-----IAVLVLLTKADKLAS--GARKAQLNM-----VREAVLA 158 (188)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHGG
T ss_pred hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhcc-----ccccchhhhhhccCH--HHHHHHHHH-----HHHHHHh
Confidence 3333445667778888888777777777766666532 389999999998865 444443333 4444544
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+... +...+||+++.|+++|++.|.+.+
T Consensus 159 ~~~~~----~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 159 FNGDV----QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp GCSCE----EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hCCCC----cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 43322 122368899999999999998765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8.3e-16 Score=128.38 Aligned_cols=157 Identities=16% Similarity=0.172 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++++++....... .+..+.......... ++. .+.++||||..... ...
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~ 70 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-----------AVT 70 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSC--TTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-----------HHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccccceeEEEEE-CCEEEEEEEeccCCchhHH-----------HHH
Confidence 68999999999999999999976643322 122222233333333 443 78899999954321 112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
......+|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........+ ....+....
T Consensus 71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (166)
T d1z0fa1 71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE---------EAKQFAEEN 139 (166)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhhcccHHH---------HHHHHHHHc
Confidence 223446799999999984322221 33445555544433 499999999996433111111 133444544
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+++. .||+++.|+++++..+.+.
T Consensus 140 ~~~~~e------~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 140 GLLFLE------ASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp TCEEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHH
Confidence 544443 6888999999999887653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.63 E-value=2e-16 Score=131.95 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|++|+|||||+|.+.+...... ...|.......... ++..+.++||||... +.....
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~----~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~ 65 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE 65 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCc----ccccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence 47899999999999999999987665322 11233333444444 677899999999321 122223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHH-HHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVH-RLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~-~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+..+|++++|+|++.+.+-.. ...+. .+....... .|+++|.||.|.... ....+.... +. ...+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~pi~lv~nK~Dl~~~--~~~~~i~~~-----~~--~~~~ 134 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGA--LDEKELIEK-----MN--LSAI 134 (164)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGC
T ss_pred ccccccchhhcccccccccccchhhhhhhhhhhhhcccC--CcEEEEEeccccchh--hhHHHHHHH-----HH--HHHH
Confidence 34567899999999984432221 11222 222211222 499999999997644 222222211 00 0111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+.+.| ...|++++.|+.+++++|.+
T Consensus 135 ~~~~~~~---~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 135 QDREICC---YSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp CSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred HhCCCEE---EEEeCcCCcCHHHHHHHHHH
Confidence 1222221 23678889999999988765
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.63 E-value=7.4e-16 Score=130.65 Aligned_cols=165 Identities=17% Similarity=0.115 Sum_probs=100.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
+..+..+|+++|.+|||||||++.+.+........ |.......... .+..+.++||||.....
T Consensus 13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~D~~g~~~~~----------- 75 (182)
T d1moza_ 13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIR----------- 75 (182)
T ss_dssp TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CC-----------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ccceEEEEEee-CCEEEEEEecccccccc-----------
Confidence 34557899999999999999999998776533211 22222333334 67789999999965432
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
......+.++|++++|+|++++.+..+ ...++....... ...|+++|.||+|.... .+..+.... +.
T Consensus 76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-----~~-- 144 (182)
T d1moza_ 76 PYWRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKE-----LN-- 144 (182)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHH-----TT--
T ss_pred hhHHhhhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHH-----HH--
Confidence 223445678899999999986655443 223333332211 22599999999998654 222221111 00
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..+..+.+.| ...||+++.|+.+++++|.+.+.+
T Consensus 145 ~~~~~~~~~~~---~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 145 LVELKDRSWSI---VASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp TTTCCSSCEEE---EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCEE---EEEECCCCCCHHHHHHHHHHHHHH
Confidence 01112222222 246899999999999999887764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=4.9e-16 Score=130.48 Aligned_cols=158 Identities=15% Similarity=0.057 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|.+|+|||||++++++...... ...|..... ..... .....+.++||||... ....
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~ 68 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-----------FGGL 68 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-----CC----EEEETTEEEEEEEECBTTCCEEEEEEECTTHHH-----------HSSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc----cccceeccccccccccccccccccccccccccc-----------ccee
Confidence 5899999999999999999987664322 112222222 22222 1224789999999332 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++++|+|++++-+-.. ..++..+..... . .|+++|.||+|+.... .. .........
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~--~~---------~~~~~~~~~ 134 (170)
T d1i2ma_ 69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDRK--VK---------AKSIVFHRK 134 (170)
T ss_dssp GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-S--CCEEEEEECCCCSCSC--CT---------TTSHHHHSS
T ss_pred cchhcccccchhhccccccccccchhHHHHHHHhhccC-C--Cceeeecchhhhhhhh--hh---------hHHHHHHHH
Confidence 3456778999999999985433222 334444444433 3 3999999999976441 11 111233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+.+++ ..||+++.|+++++..+...+..++
T Consensus 135 ~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~~~ 165 (170)
T d1i2ma_ 135 KNLQYY------DISAKSNYNFEKPFLWLARKLIGDP 165 (170)
T ss_dssp CSSEEE------EEBTTTTBTTTHHHHHHHHHHHTCT
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHccCC
Confidence 333333 3688889999999998886554443
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=5.5e-16 Score=130.00 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=99.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|.+|+|||||++.+++........... ............ ....+.++||||.... ....
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~--~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~ 72 (170)
T d1r2qa_ 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTI--GAAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS--SEEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccccccceeeccceEEEEEeccCCCchhh-----------hhhH
Confidence 3689999999999999999999766433222111 222222222221 1236889999996532 1122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|.+++.+-.. ..+...+....+... |+++|.||+|+......+.+ ..+.+....
T Consensus 73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~iilvgnK~Dl~~~~~v~~e---------~~~~~~~~~ 141 (170)
T d1r2qa_ 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI--VIALSGNKADLANKRAVDFQ---------EAQSYADDN 141 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC--EEEEEEECGGGGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCc--eEEeecccccccccccccHH---------HHHHHHHhc
Confidence 334667899999999884433222 334444555555444 99999999997533212221 133444444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .||+++.||++++..|...+..
T Consensus 142 ~~~~~e------~SAk~g~~V~e~f~~l~~~i~~ 169 (170)
T d1r2qa_ 142 SLLFME------TSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp TCEEEE------CCTTTCTTHHHHHHHHHHTSCC
T ss_pred CCEEEE------eeCCCCCCHHHHHHHHHHHHhh
Confidence 444443 6888999999999988766544
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.4e-15 Score=125.51 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=99.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
+....+|+|+|.+|+|||||++.+++...... ..+ ++.......+.. ++. .+.++||||........
T Consensus 3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~-~~~--t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~------- 71 (173)
T d2fn4a1 3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSD-YDP--TIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR------- 71 (173)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS-CCT--TCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH-------
T ss_pred CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcc-ccc--ccccceeeEecc-CCeeeeeecccccccccccccc-------
Confidence 34557999999999999999999987654222 111 112222223333 443 67789999987643321
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
...+.++|++++|+|.+++.+-.. ..++..+....+ .. .|+++|.||+|+........+ ....
T Consensus 72 ----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~p~ilvgnK~Dl~~~~~~~~~---------~~~~ 136 (173)
T d2fn4a1 72 ----EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQRQVPRS---------EASA 136 (173)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGGCCSCHH---------HHHH
T ss_pred ----chhhccceeeeeecccccccccchhhhhhHHHHHHhccCC--CceEEEEEeechhhccccchh---------hhhH
Confidence 112234599999999984432222 233333433332 33 399999999996533111111 1334
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+....+..++ ..||+++.||+++++.+.+.+...
T Consensus 137 ~~~~~~~~~~------e~Sak~g~gv~e~f~~l~~~i~k~ 170 (173)
T d2fn4a1 137 FGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRKY 170 (173)
T ss_dssp HHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCEEE------EEeCCCCcCHHHHHHHHHHHHHHH
Confidence 4444444433 368889999999999998776653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.2e-15 Score=127.30 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=98.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|.+|||||||+|++++...........+ ...............+.++|+||.... . ....
T Consensus 3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~~~~~~----~-------~~~~ 69 (166)
T d1ctqa_ 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--DSYRKQVVIDGETCLLDILDTAGQEEY----S-------AMRD 69 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE--EEEEEEEEETTEEEEEEEEEECCCGGG----H-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccc--eeeccceeeeceeeeeeeeeccCcccc----c-------cchh
Confidence 36899999999999999999998765332111111 111111111112346889999996642 1 1122
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..++++++|+|.+++.+-.. ..++..+....+.. ..|+++|.||+|..... ...+ ....+....+
T Consensus 70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~-~~~~---------~~~~~~~~~~ 138 (166)
T d1ctqa_ 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAART-VESR---------QAQDLARSYG 138 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCCC-SCHH---------HHHHHHHHHT
T ss_pred hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEeccccccccc-ccHH---------HHHHHHHHhC
Confidence 23445699999999985433222 33445555544322 24999999999975431 1111 1333444445
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+++. .||+++.|+++++..+.+.+.+
T Consensus 139 ~~~~e------~Sak~g~gi~e~f~~i~~~i~~ 165 (166)
T d1ctqa_ 139 IPYIE------TSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred CeEEE------EcCCCCcCHHHHHHHHHHHHHh
Confidence 44443 6888999999999998876654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.6e-15 Score=126.67 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|.+|+|||||++.+++........... ............ ....+.++||||.... .....
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~--~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~~ 70 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--GASFLTKKLNIGGKRVNLAIWDTAGQERF-----------HALGP 70 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC--SCEEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccchheeeeccCCccceeeeeccCCccee-----------cccch
Confidence 589999999999999999998766533221111 112222222221 1247889999996542 22234
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.......+.+ ....+....+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~~~v~~~---------e~~~~a~~~~ 139 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQ---------EAESYAESVG 139 (167)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHH---------HHHHHHHHTT
T ss_pred hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccccccchH---------HHHHHHHHcC
Confidence 56778999999999984433222 23344444443333 389999999997643211221 1344555555
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+++ ..||+++.||++++..+.+.+
T Consensus 140 ~~~~------e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 140 AKHY------HTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp CEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEecCCCcCHHHHHHHHHHHH
Confidence 4443 368888999999999877544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=6.2e-16 Score=130.64 Aligned_cols=163 Identities=17% Similarity=0.090 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|.+|+|||||+|.+++........ ...+.......+.. ++ ..+.++||||.......
T Consensus 6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 72 (177)
T d1x3sa1 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTL---------- 72 (177)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCS----------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccc--cceeecceeEEEEE-eccccEEEEEECCCchhhHHH----------
Confidence 34789999999999999999999766533222 22222233333333 33 36899999996543211
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh--CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF--GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~--~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......++|++++|+|++++-+- .....++.... ......|++++.||.|..... .... ....+.
T Consensus 73 -~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-v~~~---------~~~~~~ 139 (177)
T d1x3sa1 73 -TPSYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRN---------EGLKFA 139 (177)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHH---------HHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCcccc--ccchhhhhhhcccccccceeeEEEeecccccccc-ccHH---------HHHHHH
Confidence 12345678999999998843221 22223333322 223345899999999966431 1111 133455
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+..++. .||+++.|++++++.+.+.+.+++
T Consensus 140 ~~~~~~~~e------~Sa~tg~gv~e~f~~l~~~l~~~p 172 (177)
T d1x3sa1 140 RKHSMLFIE------ASAKTCDGVQCAFEELVEKIIQTP 172 (177)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred HHCCCEEEE------EeCCCCCCHHHHHHHHHHHHccCc
Confidence 555544433 678889999999998877666554
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.4e-15 Score=127.99 Aligned_cols=159 Identities=17% Similarity=0.126 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|.+|+|||||+|.+++........ +............. .....+.++||||... +.....
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 72 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSN--HTIGVEFGSKIINVGGKYVKLQIWDTAGQER-----------FRSVTR 72 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCC--CCSEEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccc--cccccceeeEEEEecCcceeEEEEECCCchh-----------hhhhHH
Confidence 689999999999999999998765432211 11111222222222 1223688999999543 223345
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.....+|++++|+|.+.+-+-.. ..++..+....+.. .|+++|.||+|.......... ....+....+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 141 (174)
T d2bmea1 73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFL---------EASRFAQENE 141 (174)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHHHHTT
T ss_pred HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCc--eEEEEEEecccccchhchhhh---------HHHHHHHhCC
Confidence 56778999999999984322221 23334444444433 499999999996433111111 1223333334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+++. .||+++.|+++++..+...+
T Consensus 142 ~~~~e------~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 142 LMFLE------TSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp CEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEE------eeCCCCcCHHHHHHHHHHHH
Confidence 34433 57888999999998776543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=1.3e-15 Score=128.03 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|.+|+|||||+|.+++...........+.+...............+.++||||... .......
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~~ 71 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGVA 71 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHHH
Confidence 68999999999999999999976653332222222221111111111223578999999543 2223344
Q ss_pred hcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
....+|++++|+|.+++.+-.. ..++..+....+.. ...|+++|.||+|....... .. ....+.+....
T Consensus 72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~-v~-------~~~~~~~~~~~ 143 (175)
T d1ky3a_ 72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VS-------EKSAQELAKSL 143 (175)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SC-------HHHHHHHHHHT
T ss_pred HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcc-hh-------HHHHHHHHHHc
Confidence 5678899999999985433222 33444454443321 23499999999997643110 00 01133444444
Q ss_pred CC-ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+. +++ ..||+++.|+++++..+.+.
T Consensus 144 ~~~~~~------e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 144 GDIPLF------LTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp TSCCEE------EEBTTTTBSHHHHHHHHHHH
T ss_pred CCCeEE------EEeCCCCcCHHHHHHHHHHH
Confidence 42 333 36888899999999888653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=9.4e-16 Score=128.17 Aligned_cols=161 Identities=18% Similarity=0.098 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|.+|+|||||++.+.+............ .......... .....+.++||||..... ...
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-----------~~~ 70 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--ASFMTKTVQYQNELHKFLIWDTAGLERFR-----------ALA 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGT
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--cccccccccccccccceeeeecCCchhhh-----------HHH
Confidence 36899999999999999999997665332111111 1121122222 112356799999965421 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++|+|+|++++-+-.. ..++..+....+.. .|+++|.||+|.........+ ..+.+....
T Consensus 71 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~---------~~~~~~~~~ 139 (167)
T d1z0ja1 71 PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMER---------DAKDYADSI 139 (167)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc--ceEEEecccchhccccchhHH---------HHHHHHHHc
Confidence 334667899999999984322222 22333344444443 499999999997533111111 134455544
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++ ..||+++.||++++..|.+.++
T Consensus 140 ~~~~~------e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 140 HAIFV------ETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHCC
T ss_pred CCEEE------EEecCCCCCHHHHHHHHHHhCC
Confidence 54433 3688899999999998876653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.7e-15 Score=124.82 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++........ ............... .+. .+.++||||... +....
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~ 73 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSVT 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcccc-cceeeeeeEEEEEEe-cCcEEEEEEEECCCchh-----------hHHHH
Confidence 589999999999999999988765432211 122222233333333 443 678999999543 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.....++|++++|+|.+++.+... ...+..+....+.. .|+++|.||+|.......+.+ ....+....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~d~~~~~~v~~~---------~~~~~~~~~ 142 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRE---------DGEKLAKEY 142 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHH---------HHHHHHHHH
T ss_pred HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCC--ceEEEEEeeechhhcccccHH---------HHHHHHHHc
Confidence 445667899999999984433222 22223333333333 499999999997755222222 133445555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+.+++. .|++++.|+++++..+.+-+
T Consensus 143 ~~~~~e------~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 143 GLPFME------TSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp TCCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCcCHHHHHHHHHHHc
Confidence 555554 57788899999999887554
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.5e-15 Score=126.59 Aligned_cols=157 Identities=17% Similarity=0.163 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++......... +.+.......+.. ++ ..+.++||||..+.... .
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~-----------~ 70 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKS--TIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRI-----------T 70 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---C--CCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCC-----------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcccc--cccceeeeEEEEE-CCEEEEEEecccCCcHHHHHH-----------H
Confidence 6899999999999999999987665333221 2222222333333 43 37889999995432221 1
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|.+++-+-. ...++..+....+..+ |+++|.||+|.......... .........
T Consensus 71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~--piilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (175)
T d2f9la1 71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI--VIMLVGNKSDLRHLRAVPTD---------EARAFAEKN 139 (175)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCC--cEEEEEeeecccccccchHH---------HHHHhhccc
Confidence 22346779999999998442222 2344555666655544 99999999997633111111 122233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+++. .||+++.|++++++.+...
T Consensus 140 ~~~~~e------~Sa~~g~~i~e~f~~l~~~ 164 (175)
T d2f9la1 140 NLSFIE------TSALDSTNVEEAFKNILTE 164 (175)
T ss_dssp TCEEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred CceEEE------EecCCCcCHHHHHHHHHHH
Confidence 444443 5778889999998776543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.1e-15 Score=126.85 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|.+|+|||||++.+++...+.... ...+.......... .....+.++||+|....... ..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-----------~~ 70 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI-----------TR 70 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC-----------CH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcc--cceeeccceeeeeeeeeEEEEEeecccCccchhhH-----------HH
Confidence 589999999999999999998776533221 11222222222222 12247899999997653221 22
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+....+..+ |+++|.||+|.........+ ....+....+
T Consensus 71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~~~~~~~---------~~~~~a~~~~ 139 (173)
T d2a5ja1 71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM--VIMLIGNKSDLESRRDVKRE---------EGEAFAREHG 139 (173)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC--EEEEEEECTTCGGGCCSCHH---------HHHHHHHHHT
T ss_pred HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCC--eEEEEecCCchhhhhhhHHH---------HHHHHHHHcC
Confidence 33557799999999985433222 334455555555544 99999999996533111111 1333444444
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+++ ..||+++.||++++..+.+.+
T Consensus 140 ~~~~------e~Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 140 LIFM------ETSAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp CEEE------EECTTTCTTHHHHHHHHHHHH
T ss_pred CEEE------EecCCCCCCHHHHHHHHHHHH
Confidence 4443 368889999999988776543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=1.6e-15 Score=127.62 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++....... .+..+.......... ++ ..+.++||||... +....
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~-----------~~~~~ 72 (173)
T d2fu5c1 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTIT 72 (173)
T ss_dssp EEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCcc--CccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 57999999999999999999976642221 112222333334444 44 3677899999543 22334
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++|++|+|+|++++.+-.. ..++..+....... .|+++|.||.|..........+ ........
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~~~~~~~---------~~~~~~~~ 141 (173)
T d2fu5c1 73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLALDY 141 (173)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHHHH
T ss_pred HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhcccHHHH---------HHHHHHhc
Confidence 556788999999999985443322 23334444444433 4999999999977542222221 22334444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++. .|++++.|+.++++.+...+.
T Consensus 142 ~~~~~e------~Sa~~g~gv~e~f~~l~~~i~ 168 (173)
T d2fu5c1 142 GIKFME------TSAKANINVENAFFTLARDIK 168 (173)
T ss_dssp TCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 555543 577788999999988876554
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.8e-15 Score=124.38 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||++++++...........+ ......... ++ ..+.++||||..... ..
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~ 67 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE---DFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee---eeeeeeeec-CcceEeeccccCCCccccc-----------cc
Confidence 47899999999999999999997764332211111 111112222 33 367889999965421 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++++|+|++++-+-.. ..+...+....+ ....|+++|.||+|+......... ....+...
T Consensus 68 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T d1kaoa_ 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSS---------EGRALAEE 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhcccchHH---------HHHHHHHH
Confidence 2223445699999999984433222 222223333222 222499999999997643211111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+.+++. .||+++.|++++++.+.+.+
T Consensus 138 ~~~~~~e------~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 138 WGCPFME------TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHH
T ss_pred cCCeEEE------ECCCCCcCHHHHHHHHHHHH
Confidence 4545443 68889999999999877544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.4e-15 Score=125.78 Aligned_cols=168 Identities=17% Similarity=0.231 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|.+|+|||||+|+|+|..... .+..+.|...............+.++|+||..... ..............
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 81 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS 81 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcee--eccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence 468999999999999999999987632 22233333333333333366677889999976421 11111111112222
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN- 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~- 178 (371)
....+++++++.|.. ............+.. . ..|.++|+||+|.+... ..+... ...+....+.
T Consensus 82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~---~--~~~~i~v~~k~d~~~~~-~~~~~~--------~~~~~~~~~~~ 146 (179)
T d1egaa1 82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLRE---G--KAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQMNFL 146 (179)
T ss_dssp CCCCEEEEEEEEETT-CCCHHHHHHHHHHHS---S--SSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTSCCS
T ss_pred chhhcceeEEEEecC-ccchhHHHHHHHhhh---c--cCceeeeeeeeeccchh-hhhhhH--------hhhhhhhcCCC
Confidence 345678888999987 444444444333332 2 23899999999988652 122211 2233333332
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.++ ++||+++.|+++|++.|.+.+++..
T Consensus 147 ~~~------~vSA~~g~gi~~L~~~i~~~lpe~~ 174 (179)
T d1egaa1 147 DIV------PISAETGLNVDTIAAIVRKHLPEAT 174 (179)
T ss_dssp EEE------ECCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred CEE------EEeCcCCCCHHHHHHHHHHhCCCCC
Confidence 222 3688899999999999988887643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.1e-15 Score=125.49 Aligned_cols=161 Identities=22% Similarity=0.150 Sum_probs=95.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||++.+++.......... ........... ++ ..+.++||||...... .
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t---~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~-----------~ 69 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPT---IEDSYTKQCVI-DDRAARLDILDTAGQEEFGA-----------M 69 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTT---CCEEEEEEEEE-TTEEEEEEEEECC----CCH-----------H
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcc---cccceeeeeee-cccccccccccccccccccc-----------c
Confidence 368999999999999999999876543221111 11122222233 33 3688999999775321 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|.+++-+-.. ..++..+....+.. ..|+++|.||+|.........+ ....+...
T Consensus 70 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~~~v~~~---------~~~~~~~~ 139 (171)
T d2erya1 70 REQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQRQVTQE---------EGQQLARQ 139 (171)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTSCSSCHH---------HHHHHHHH
T ss_pred ccccccccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhhccchHH---------HHHHHHHH
Confidence 1222334699999999985433222 22333333333321 2489999999997544211221 13445555
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+.+++. .||+++.||++++..+.+.+..
T Consensus 140 ~~~~~~e------~Sak~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 140 LKVTYME------ASAKIRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEE------EcCCCCcCHHHHHHHHHHHHHH
Confidence 5555443 6888899999999999877654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.3e-14 Score=120.95 Aligned_cols=157 Identities=20% Similarity=0.165 Sum_probs=97.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+|+|+|.+|+|||||++.+++...... . ..|....+ ..... ++. .+.++||||.......
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~---------- 68 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDS-Y---DPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIF---------- 68 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSC-C---CSSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCC----------
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCcc-c---CcceecccceEEec-CcEEEEeeecccccccccccc----------
Confidence 47899999999999999999986554222 1 11221221 22233 443 6778999997654321
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++-+-.. ..++..+....+.. ..|+++|.||+|+.....-+.+ ..+.+..
T Consensus 69 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~r~v~~~---------~~~~~a~ 137 (167)
T d1xtqa1 69 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHMERVISYE---------EGKALAE 137 (167)
T ss_dssp -CGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred -cchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccccchhHH---------HHHHHHH
Confidence 1234668899999999985433222 23344454444432 2399999999997543111222 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..+..++. .||+++.|+++++..+...
T Consensus 138 ~~~~~~~e------~Sak~~~~v~~~f~~li~~ 164 (167)
T d1xtqa1 138 SWNAAFLE------SSAKENQTAVDVFRRIILE 164 (167)
T ss_dssp HHTCEEEE------CCTTCHHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EecCCCCCHHHHHHHHHHH
Confidence 44544433 6888999999999877543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.5e-15 Score=126.82 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++...... .. .|.... ...... .....+.++||||.... ....
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~-~~---~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~ 67 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFPEV-YV---PTVFENYVADIEVDGKQVELALWDTAGLEDY-----------DRLR 67 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS-CC---CCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------TTTG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCC-cC---CceeeeccccccccccceeeeccccCccchh-----------cccc
Confidence 5899999999999999999997664322 11 121111 111222 12236899999996542 2234
Q ss_pred hhhcCCceEEEEEEeCCCCCCH--HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC-----CchHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQ--EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC-----PKPLK 170 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~--~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~-----~~~l~ 170 (371)
...+.++|++++|+|++++-+- ....++..+... +... |+++|.||+|.... ........... ....+
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~~--piilvgnK~Dl~~~--~~~~~~~~~~~~~~v~~~e~~ 142 (177)
T d1kmqa_ 68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPNV--PIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR 142 (177)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTS--CEEEEEECGGGTTC--HHHHHHHHHTTCCCCCHHHHH
T ss_pred hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCCC--ceEEeeecccccch--hhHHHHHHHhhcccccHHHHH
Confidence 5567889999999999854322 223344444443 3343 99999999998765 22221111000 11233
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+....+...+ ...||+++.||+++++.+.+.+
T Consensus 143 ~~a~~~~~~~~-----~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 143 DMANRIGAFGY-----MECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp HHHHHTTCSEE-----EECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCcEE-----EEecCCCCcCHHHHHHHHHHHH
Confidence 44444443211 1368889999999999887543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=2e-15 Score=125.90 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++........ +..+.......+.. ++. .+.++||||....... .
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~--~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~-----------~ 68 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------T 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccC--CccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------H
Confidence 689999999999999999999766533211 22222333333444 333 5778999995432211 2
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEA-AVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|.+++-+..... ....+...... ..|++++.+|.|..... ...+ ....+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~i~~~~k~d~~~~~-~~~~---------~~~~~~~~~ 136 (166)
T d1g16a_ 69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VTAD---------QGEALAKEL 136 (166)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTCC-SCHH---------HHHHHHHHH
T ss_pred HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccC--cceeeeecchhhhhhhh-hhHH---------HHHHHHHhc
Confidence 23456789999999998543322222 22333333332 34899999999976442 1111 134455555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .|++++.|+.++++.+.+.+.+
T Consensus 137 ~~~~~~------~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 137 GIPFIE------SSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp TCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEE------ECCCCCCCHHHHHHHHHHHHHh
Confidence 655554 5778899999999998877654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.60 E-value=6.3e-15 Score=123.30 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=92.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
|..+|+|+|.+|+|||||+|.+++...... .. .|....+ ..... ++ ..+.++||||.... .
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~-~~---~T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~----~------- 66 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-YE---PTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----A------- 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC-CC---TTCCEEEEEEEEE-TTEEEEEEEEECCC---C----H-------
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcc-cC---Ccccccccccccc-ccccccccccccccccch----h-------
Confidence 346899999999999999999986554222 11 1211111 12222 44 36788999997652 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+.++|++++|+|.+++.+-.. ..++..+....+. ...|+++|.||+|.......+.+ ....+.
T Consensus 67 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~~~v~~~---------~~~~~~ 136 (168)
T d1u8za_ 67 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRA 136 (168)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred hhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEeccccccccccccHH---------HHHHHH
Confidence 111222335699999999985433222 2344444443332 12499999999996533111111 133445
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+.+++. .||+++.|+++++..+.+-+
T Consensus 137 ~~~~~~~~e------~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 137 DQWNVNYVE------TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp HHHTCEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCeEEE------EcCCCCcCHHHHHHHHHHHH
Confidence 555554443 68889999999998776544
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7e-15 Score=122.96 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||++.+++...... ...|....+......++ ..+.++||||..... . .
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~----~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----~---~--- 66 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE----YDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-----Q---R--- 66 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC----CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-----H---H---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeccccccccccccceEEEEeecccccccc-----c---c---
Confidence 37899999999999999999997654322 11222222222222244 368899999976421 0 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|++++-+-..... ...+..... ....|+++|.||+|+......+.+ ....+...
T Consensus 67 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~r~V~~~---------e~~~~a~~ 135 (168)
T d2atva1 67 -EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTE---------EGEKLATE 135 (168)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred -hhhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhhccCcHH---------HHHHHHHH
Confidence 112335699999999985533333222 222222222 122499999999997532111111 13344455
Q ss_pred cCCceEeecCcchhhHhhHHh-HHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQ-VQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~~ 208 (371)
.+.+++. .||+++.+ |++++..+...+
T Consensus 136 ~~~~~~e------~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 136 LACAFYE------CSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp HTSEEEE------CCTTTCTTCHHHHHHHHHHHH
T ss_pred hCCeEEE------EccccCCcCHHHHHHHHHHHH
Confidence 5554443 57777874 999988776543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.6e-15 Score=125.62 Aligned_cols=167 Identities=14% Similarity=0.063 Sum_probs=98.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
|.....+|+|+|.+|+|||||++.++..... ....+. ........... .+ ..+.++||||......
T Consensus 5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~~T--i~~~~~~~~~~-~~~~~~l~i~D~~g~e~~~~-------- 72 (185)
T d2atxa1 5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPT--VFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-------- 72 (185)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCS--SCCCEEEEEES-SSCEEEEEEECCCCSSSSTT--------
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHhhCCCC-CcCCCc--eeeeeeEEEee-CCceEEeecccccccchhhh--------
Confidence 3445579999999999999999999875542 221111 11111112222 33 3678999999754321
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC-----
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC----- 165 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~----- 165 (371)
.....+.++|++++|+|++++-+-. ...+...+... .... |+++|.||+|+... ...........
T Consensus 73 ---~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~--~~ilvgnK~Dl~~~--~~~~~~~~~~~~r~v~ 144 (185)
T d2atxa1 73 ---LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNV--PFLLIGTQIDLRDD--PKTLARLNDMKEKPIC 144 (185)
T ss_dssp ---TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STTC--CEEEEEECTTSTTC--HHHHHHHTTTTCCCCC
T ss_pred ---hhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCCC--CeeEeeeccccccc--hhhhhhhhhccccccc
Confidence 2344577889999999998543322 23344444444 3333 99999999997755 22221111100
Q ss_pred CchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 166 PKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 166 ~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
......+....+. .++ ..||+++.||+++++.+...
T Consensus 145 ~~~~~~~a~~~~~~~~~------E~SAk~~~gv~e~F~~li~~ 181 (185)
T d2atxa1 145 VEQGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIA 181 (185)
T ss_dssp HHHHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEE------EecCCCCcCHHHHHHHHHHH
Confidence 1112334444442 222 36888999999999887643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.57 E-value=6.1e-15 Score=121.38 Aligned_cols=156 Identities=11% Similarity=0.018 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|||||||+|+|++........... ........ ....+.++|+||.... ......
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~~ 63 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-----FNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH 63 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-----CCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcccccee-----eEEEEEee-eeEEEEEecCCCcccc-----------hhhhhh
Confidence 479999999999999999999876533211111 11112222 5668899999996642 122334
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC--CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG--KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.....+++++++|..++.+... ...++..... .....|+++|.||.|.... ....+..... ....+...+
T Consensus 64 ~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~--~~~~~i~~~~----~~~~~~~~~ 135 (160)
T d1r8sa_ 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKL----GLHSLRHRN 135 (160)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHT----TGGGCSSCC
T ss_pred hhccceeEEEEEEecChHHHHH--HHHHHHHHHHhhcccCceEEEEeeccccccc--ccHHHHHHHH----HHHHHhhCC
Confidence 4567799999999985433222 1222222211 1123499999999997755 2222111110 000111112
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+ .+.||+++.|+++++++|.+
T Consensus 136 ~~~------~~~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 136 WYI------QATCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp EEE------EECBTTTTBTHHHHHHHHHH
T ss_pred CEE------EEeECCCCCCHHHHHHHHHh
Confidence 112 24689999999999999865
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=8.8e-15 Score=124.28 Aligned_cols=160 Identities=14% Similarity=0.091 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------CCcEEEEEeCCCCCCCCcchHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------DGQVVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~i~liDTPG~~~~~~~~~~ 88 (371)
.+|+|+|.+|+|||||++.+++........ +..+.......+... ....+.++||||. +
T Consensus 6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~-------e- 75 (186)
T d2f7sa1 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ-------E- 75 (186)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-------H-
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCccC--CcccceeeEEEEEEecccccccccccceEEeccccCCcc-------h-
Confidence 689999999999999999999766432211 111111111111111 1136889999992 2
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 89 VSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 89 ~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
.+.......+.++|++++|+|++++.+ ......++...... ....|+++|.||.|.........
T Consensus 76 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~--------- 141 (186)
T d2f7sa1 76 ---RFRSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE--------- 141 (186)
T ss_dssp ---HHHHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH---------
T ss_pred ---hhHHHHHHHHhcCCEEEEEEecccccc--ceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH---------
Confidence 233344445678899999999974221 11222333322211 12248899999999753311111
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.....+...++.+++. .||+++.|++++++.+.+.+.
T Consensus 142 ~e~~~~~~~~~~~~~e------~Sak~~~~i~e~f~~l~~~i~ 178 (186)
T d2f7sa1 142 RQARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 178 (186)
T ss_dssp HHHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 1234556666655544 678889999999998877554
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=6.2e-15 Score=123.46 Aligned_cols=161 Identities=21% Similarity=0.173 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
|..+|+++|.+|+|||||++.+++...... ..+ ...... ...... ++ ..+.++||||.......
T Consensus 3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~-~~~-t~~~~~-~~~~~~-~~~~~~~~i~d~~g~~~~~~~---------- 68 (169)
T d1x1ra1 3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPD-YDP-TIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAM---------- 68 (169)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCTT-CCT-TCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSS----------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCcc-cCc-ceeecc-cccccc-ccccccccccccccccccccc----------
Confidence 458999999999999999999987654322 111 111111 112222 33 46789999997653222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++-+-.. ..++..+....+. ...|+++|.||+|.......+.+ ....+..
T Consensus 69 -~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~e---------~~~~~~~ 137 (169)
T d1x1ra1 69 -REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD---------QGKEMAT 137 (169)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH---------HHHHHHH
T ss_pred -hhhhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhceeehh---------hHHHHHH
Confidence 1122345699999999985433222 2344445444432 22499999999997654211222 1344555
Q ss_pred hcCCceEeecCcchhhHhhHH-hHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTE-QVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .||+++. ||++++..+.+.+.
T Consensus 138 ~~~~~~~e------~Sak~~~~nV~~~F~~l~~~i~ 167 (169)
T d1x1ra1 138 KYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 167 (169)
T ss_dssp HHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EcCCCCCcCHHHHHHHHHHHHH
Confidence 55655554 4666555 89999998876554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.8e-15 Score=126.68 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||++.+++...........+ .......+.. .+ ..+.++||||..... ..
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~--~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~-----------~~ 68 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--AAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--ceeecccccc-ccccccccccccCCchhHH-----------HH
Confidence 37899999999999999999987765333221112 1122222333 33 378999999965421 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-hhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-KTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|.+++.+-.. ..+...+...... ..|+++|.||+|...... ..+ .......+..
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~~~~~~~~v-------~~~~~~~~~~ 139 (170)
T d1ek0a_ 69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDMLQEGGERKV-------AREEGEKLAE 139 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGSSCCCCS-------CHHHHHHHHH
T ss_pred HHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeecccccccccchhhh-------hHHHHHHHHH
Confidence 2335668899999999985433332 2222233333333 249999999999753310 000 0112344555
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..+.+++. .||+++.||+++|..|.+-
T Consensus 140 ~~~~~~~e------~Sak~g~gV~e~F~~i~~~ 166 (170)
T d1ek0a_ 140 EKGLLFFE------TSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHTT
T ss_pred HcCCEEEE------ecCCCCcCHHHHHHHHHHH
Confidence 55554443 6788899999999887543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=1.8e-14 Score=129.19 Aligned_cols=138 Identities=20% Similarity=0.272 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCcccc-------------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFKA-------------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
.++|+++|+.|+|||||+.+|+ |...... .....+.|.......+.| ++..++|+||||+.++
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhh
Confidence 4689999999999999999985 3211000 011124455555666777 8999999999999997
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
... ....+.. +|++|+|+|+..+........++..... . .|.++++||+|.... .+...
T Consensus 85 ~~e-------~~~~l~~----~D~avlVvda~~Gv~~~T~~~w~~a~~~---~--lP~i~fINKmDr~~a---d~~~~-- 143 (276)
T d2bv3a2 85 TIE-------VERSMRV----LDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGA---DLWLV-- 143 (276)
T ss_dssp STT-------HHHHHHH----CCEEEEEEETTTSSCHHHHHHHHHHHTT---T--CCEEEEEECTTSTTC---CHHHH--
T ss_pred HHH-------HHHHHHh----hhheEEeccccCCcchhHHHHHHHHHHc---C--CCEEEEEeccccccc---ccchh--
Confidence 544 3444443 4999999999999999998888888754 3 399999999998765 23333
Q ss_pred ccCCchHHHHHHhcCCceEeec
Q 040649 163 LECPKPLKEILQLCDNRWVLFD 184 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~r~~~f~ 184 (371)
+.++-..++.+++++.
T Consensus 144 ------l~ei~~~l~~~~vp~~ 159 (276)
T d2bv3a2 144 ------IRTMQERLGARPVVMQ 159 (276)
T ss_dssp ------HHHHHHTTCCCEEECE
T ss_pred ------HHHHHHHhCCCeEEEE
Confidence 3445556677766654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.8e-14 Score=119.73 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc-ccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|.+|+|||||+|.+++.... .....+.+.. .....+.. ++. .+.++|+||... .+ .+ .
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~~~d~~~~~g----~e----~~--~ 70 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERTLMV-DGESATIILLDMWENKG----EN----EW--L 70 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEEEEE-TTEEEEEEEECCTTTTH----HH----HH--H
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeee--cceeeecc-CCceeeeeeeccccccc----cc----cc--c
Confidence 68999999999999999999976542 2211111111 11122222 333 567899987432 11 11 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++|++|+|+|++++-+-.. ..+...+....+ ....|+++|.||+|+......+.++ .+.+...
T Consensus 71 ~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~a~~ 140 (172)
T d2g3ya1 71 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACAVV 140 (172)
T ss_dssp HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred ccccccccceeeeeecccccchhhhhhhhhhhhhhccc-cCCceEEEEeccccccccccccHHH---------HHHHHHH
Confidence 2345778999999999984333222 122222322211 1224999999999965432122221 2334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+.+++. .||+++.|++++++.+...+.
T Consensus 141 ~~~~~~e------~Sak~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 141 FDCKFIE------TSAAVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCeEEE------EeCCCCcCHHHHHHHHHHHHH
Confidence 4444432 688899999999998876554
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.55 E-value=1.9e-14 Score=120.83 Aligned_cols=163 Identities=12% Similarity=0.028 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++..+|+|+|.+|||||||+|+|.+......... .+ + ....... .+..+.++|++|.......
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~-~~-~---~~~~~~~-~~~~~~~~d~~~~~~~~~~----------- 75 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IG-S---NVEEIVI-NNTRFLMWDIGGQESLRSS----------- 75 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SC-S---SCEEEEE-TTEEEEEEECCC----CGG-----------
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccc-cc-e---eEEEEee-cceEEEEeccccccccccc-----------
Confidence 3458999999999999999999999776332111 11 1 1122223 5678899999986543221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-hhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-KTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.......++++++|+|.++..+....................|+++|+||+|...... ..+...... .....
T Consensus 76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~-------~~~~~ 148 (177)
T d1zj6a1 76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL-------TSIKD 148 (177)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTG-------GGCCS
T ss_pred hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHH-------HhhHh
Confidence 2223456799999999985444333221111111111122359999999999765411 112222111 00011
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++.+++ ..||+++.|+++++++|.+.++
T Consensus 149 ~~~~~~------~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 149 HQWHIQ------ACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp SCEEEE------ECBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHhC
Confidence 111222 3688999999999999987653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=1e-14 Score=123.68 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|.+|||||||++.+++.........+.+.+ ........ .....+.++||||....... ..
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~ 69 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVMVDDRLVTMQIWDTAGQERFQSL-----------GV 69 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEE--EEEEEEESSSCEEEEEEEEECSSGGGSCS-----------CC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcccee--eeeeeeeeCCceEEEEeeecCCccccccc-----------cc
Confidence 589999999999999999999766432211111222 22222222 12347889999996543221 23
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.....+|++++|+|.+++-+-.. ..++..+....... ...|+++|.||+|+.... ...+. ...+...
T Consensus 70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-~~~~~---------~~~~~~~ 139 (184)
T d1vg8a_ 70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQAWCYS 139 (184)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HHHHHHH
T ss_pred ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccc-hhHHH---------HHHHHHH
Confidence 44667899999999974322221 23344444443221 123999999999965431 11111 2223322
Q ss_pred -cCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 176 -CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 176 -~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+.+++. .||+++.|+.++++.+.+.
T Consensus 140 ~~~~~~~e------~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 140 KNNIPYFE------TSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp TTSCCEEE------CBTTTTBSHHHHHHHHHHH
T ss_pred hcCCeEEE------EcCCCCcCHHHHHHHHHHH
Confidence 2333333 5788899999999887543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.5e-14 Score=118.00 Aligned_cols=160 Identities=19% Similarity=0.070 Sum_probs=95.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+-.+|+|+|.+|+|||||+|.+++........ ..+........... .+ ..+.++||||... ...
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~-----------~~~ 70 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 70 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeeeeeeeeeee-cCceeeEeeecccCcce-----------ehh
Confidence 34689999999999999999998765422211 11122222222222 33 3668999999654 122
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
........+|++++|+|.+.+.+-.. ..++..+....... ...|+++|.||+|..... ...+ ..+.+
T Consensus 71 ~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-v~~~---------~~~~~ 140 (174)
T d1wmsa_ 71 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTE---------EAQAW 140 (174)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHH---------HHHHH
T ss_pred hhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc-CcHH---------HHHHH
Confidence 34455678899999999984433222 33444444443221 124999999999975321 1111 13445
Q ss_pred HHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 173 LQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 173 ~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
....+ .+++. .||+++.||+++++.+.+.
T Consensus 141 ~~~~~~~~~~e------~Sak~~~gI~e~f~~l~~~ 170 (174)
T d1wmsa_ 141 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRR 170 (174)
T ss_dssp HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCCeEEE------EcCCCCcCHHHHHHHHHHH
Confidence 54433 23332 6888999999999887643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.54 E-value=4e-14 Score=123.60 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=98.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC---CCccc-----------cC-----------------CCCCccceeEEEEeEEe
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG---RRAFK-----------AS-----------------AGSSAITKTCEMKTTVL 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~-----------~~-----------------~~~~~~t~~~~~~~~~~ 65 (371)
++.++|+++|+.++|||||++.|+. ..... .+ ....+.|.......+.+
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 3567899999999999999999963 21100 00 00012333333333344
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.++.+++|||||..++ ..++.. ....+|++++|+|+..++.......+..+.. +|- +++|+++|
T Consensus 87 -~~~~~~iiD~PGH~df-------v~~~~~----g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~-~gv---~~iiv~vN 150 (222)
T d1zunb3 87 -AKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 150 (222)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred -cceEEEEEeccchhhh-------hhhhcc----ccccCceEEEEeccccCcccchHHHHHHHHH-cCC---CEEEEEEE
Confidence 6788999999998763 233333 3456699999999998999888877776665 342 37999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCC--ceEeecCcchhhHhhHHhHH
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN--RWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~--r~~~f~~~~~~sa~~~~~i~ 198 (371)
|+|....+.......... +..++...+. .-++| .+.||.+|.++.
T Consensus 151 K~D~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~i~~---IPiSA~~G~ni~ 197 (222)
T d1zunb3 151 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNVV 197 (222)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTTS
T ss_pred ccccccccceehhhhHHH-----HhhhhHhhccCCCceEE---EEEEcccCccCC
Confidence 999886543344433333 5556654432 11222 235777777663
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=4e-14 Score=117.64 Aligned_cols=158 Identities=12% Similarity=0.063 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|.+|+|||||++.+++...........+........... .....+.++|+||.... . ......
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~---~~~~~~ 71 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQERF-------R---KSMVQH 71 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHHH-------H---TTTHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeee-ccceEEEEEeccCchhh-------c---ccccee
Confidence 589999999999999999999766543322222222222221111 13447889999995321 0 111223
Q ss_pred hcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.+.++|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|+......+.+ ....+....+.
T Consensus 72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~---------~~~~~~~~~~~ 141 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTD---------LAQKFADTHSM 141 (165)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHTTC
T ss_pred eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHH---------HHHHHHHHCCC
Confidence 4568899999999985433332 2344444443332 12499999999997643211221 13445555565
Q ss_pred ceEeecCcchhhHhh---HHhHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKR---TEQVQQLLSLV 204 (371)
Q Consensus 179 r~~~f~~~~~~sa~~---~~~i~~Ll~~i 204 (371)
+++. .||++ +.+|.+++..+
T Consensus 142 ~~~e------~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 142 PLFE------TSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp CEEE------CCSSSGGGGSCHHHHHHHH
T ss_pred EEEE------EecccCCcCcCHHHHHHHh
Confidence 5554 34443 46888888765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4e-14 Score=120.76 Aligned_cols=165 Identities=19% Similarity=0.159 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+|+|+|.+|+|||||++.+++........ .|..... ..... .+ ..+.++||||.... ..
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~----~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~ 66 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYV----PTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DR 66 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------TT
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcC----CceeeecceeEee-CCceeeeeccccccchhh-----------hh
Confidence 3789999999999999999998766432211 1221211 22222 33 37889999996542 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc----CCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE----CPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~----~~~~l 169 (371)
.....+.++|++++|+|++++-+-.. ..++..+.. .... .|+++|.||+|+.... .......... .....
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~--~~i~lvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 142 (191)
T d2ngra_ 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HCPK--TPFLLVGTQIDLRDDP-STIEKLAKNKQKPITPETA 142 (191)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTT--CCEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred hhhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cCCC--CceEEEeccccccccc-hhhhhhhhcccccccHHHH
Confidence 34556778999999999985433222 223333333 3333 3999999999976541 1122111100 01112
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+....++ .++ ..||+++.+|+++++.+...+-
T Consensus 143 ~~~~~~~~~~~~~------e~SAk~~~~V~e~f~~l~~~~~ 177 (191)
T d2ngra_ 143 EKLARDLKAVKYV------ECSALTQKGLKNVFDEAILAAL 177 (191)
T ss_dssp HHHHHHTTCSCEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCeEE------EEeCCCCcCHHHHHHHHHHHHh
Confidence 334443332 333 2688889999999988775443
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.6e-14 Score=122.38 Aligned_cols=169 Identities=14% Similarity=0.027 Sum_probs=97.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+...+|+|+|.+|+|||||+|.+++........+..+ ......... .....+.++|++|.... ..
T Consensus 3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~---~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~ 68 (183)
T d1mh1a_ 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 68 (183)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEETTEEEEEEEECCCCSGGG-----------TT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee---eceeeeeeccCcceEEEeecccccccc-----------hh
Confidence 3458999999999999999999997764332221111 111112222 12236789999985432 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-cCCc---hH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-ECPK---PL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-~~~~---~l 169 (371)
....++.++|++++|+|++++-+-.. ..+...+... ... .|+++|.||+|+.... ......... .... ..
T Consensus 69 ~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 144 (183)
T d1mh1a_ 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CPN--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 144 (183)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred hhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CCC--CcEEEEeecccchhhh-hhhhhhhhccccchhhHHH
Confidence 23456778999999999984433222 2244444443 333 3999999999976542 111111110 0011 12
Q ss_pred HHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+....+. +.+| ..||+++.||+++|..+.+.+
T Consensus 145 ~~~a~~~~~-~~~~----E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 145 LAMAKEIGA-VKYL----ECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp HHHHHHTTC-SEEE----ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCC-ceEE----EcCCCCCcCHHHHHHHHHHHH
Confidence 223333332 2222 368889999999999887544
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.3e-14 Score=118.59 Aligned_cols=159 Identities=16% Similarity=0.098 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++........ .|...... .... .....+.++|++|....... .
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~ 68 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAM-----------R 68 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTH-----------H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccC----CccccccceeEEeeeeEEEeccccccCccccccc-----------c
Confidence 689999999999999999998766432211 12111111 1222 12347899999997764221 1
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.. ..++..+....+. ...|+++|.||+|.........+ ....+....
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~---------~~~~~~~~~ 138 (167)
T d1c1ya_ 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE---------QGQNLARQW 138 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccccccchh---------HHHHHHHHh
Confidence 223445699999999985433222 2334444443332 12499999999997643211111 122333332
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+ +..| ..||+++.|+.+++..+.+.+
T Consensus 139 ~~-~~~~----e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 139 CN-CAFL----ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TS-CEEE----ECBTTTTBSHHHHHHHHHHHH
T ss_pred CC-CEEE----EEcCCCCcCHHHHHHHHHHHh
Confidence 22 1222 368889999999999887654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.51 E-value=1e-13 Score=114.69 Aligned_cols=163 Identities=15% Similarity=0.067 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+++|.+|||||||+|.+++...... ..|.......... ++..+.++|+||..... ...
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~ 66 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYW 66 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccccc-----------ccc
Confidence 347999999999999999999998775322 1222222333333 67789999999876421 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.......+++++++++....+...... +...... ......|+++|.||.|.... ....+.... + ....+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~--~~~~~i~~~-----~--~~~~~ 136 (169)
T d1upta_ 67 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQA--MTSSEMANS-----L--GLPAL 136 (169)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----H--TGGGC
T ss_pred hhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeecccccc--ccHHHHHHH-----H--HHHHH
Confidence 334567799999999874433332221 1111111 11223589999999998755 222221111 0 00111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.++| .+.||+++.|++++++.|.+.++.
T Consensus 137 ~~~~~~~---~~~SA~~g~gv~e~~~~l~~~l~~ 167 (169)
T d1upta_ 137 KDRKWQI---FKTSATKGTGLDEAMEWLVETLKS 167 (169)
T ss_dssp TTSCEEE---EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hcCCCEE---EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2222222 246888999999999999877654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.48 E-value=1.7e-13 Score=122.49 Aligned_cols=114 Identities=26% Similarity=0.306 Sum_probs=84.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh---CCCccc----cCCC---------CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSIL---GRRAFK----ASAG---------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~---g~~~~~----~~~~---------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
++|+|+|+.|+|||||+.+|+ |..... .+.. ..+.|.......+.| ++..+++|||||+.++
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF- 80 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF- 80 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence 579999999999999999985 322100 0000 023455555566677 8999999999998874
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
..+....+..+ |++|+|+|+..+........++.+... . .|.++++||+|..
T Consensus 81 ------~~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~~---~--~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 81 ------VGEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG 132 (267)
T ss_dssp ------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred ------hhhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhhc---c--ccccccccccccc
Confidence 33444555544 999999999999999999888888764 2 3999999999974
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=1e-13 Score=113.98 Aligned_cols=162 Identities=10% Similarity=0.024 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+|++...... .+|.......... .+..+.++||+|.... .......
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~ 64 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQA-----------RRLWKDY 64 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEECC-TTCCEEEEECCCSGGG-----------GGGGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEecc-CCeeEEEEeeccchhh-----------hhhHhhh
Confidence 799999999999999999998775321 1222222233333 5667889999986532 2223445
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++++++++|..+.........+.............|++++.||.|..... ...+.+.+.. ........+. ..+
T Consensus 65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~-~~~~~~~~~~--~~~ 141 (166)
T d2qtvb1 65 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGL-LNTTGSQRIE--GQR 141 (166)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTC-SSCCC---CC--SSC
T ss_pred hhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhh-hhhhHHHhhc--ccC
Confidence 66789999999998544333222111111111222345899999999986541 1122222211 0000000100 111
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.+. ....||+++.|+++++++|.
T Consensus 142 ~~~---~~~~SA~tg~Gv~e~~~~l~ 164 (166)
T d2qtvb1 142 PVE---VFMCSVVMRNGYLEAFQWLS 164 (166)
T ss_dssp CEE---EEEEBTTTTBSHHHHHHHHT
T ss_pred CCE---EEEeeCCCCCCHHHHHHHHh
Confidence 111 13468999999999999874
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=4.3e-13 Score=113.11 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccce-eEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITK-TCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~-~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.++....+.. .. .|. ......... .....+.++||||..... ...
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~~~-~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~ 67 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFPEN-YV---PTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------NVR 67 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS-CC---CCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------TTG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCc-cC---CceeecccccccccceEEeecccccccccccc-----------ccc
Confidence 5789999999999999999987654322 11 121 122222222 122367799999965321 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC----CchHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC----PKPLKE 171 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~----~~~l~~ 171 (371)
...+.++|++++|+|++++-+-.. ..+...+.. .+... |+++|.||+|..... ........... ......
T Consensus 68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~~~~--~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~~ 143 (179)
T d1m7ba_ 68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FCPNT--KMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGAN 143 (179)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTC--EEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHH
T ss_pred cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cCCcc--eEEEEEecccccccc-hhhHHHhhhhcCcchHHHHHH
Confidence 345778999999999984432121 222333333 33343 999999999976442 11111111000 112333
Q ss_pred HHHhcCCceEeecCcchhhHhhHH-hHHHHHHHHHHHH
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTE-QVQQLLSLVNAVN 208 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~ 208 (371)
+....+.-.+ | ..||+++. +++++++.+...+
T Consensus 144 ~a~~~~~~~y-~----E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 144 MAKQIGAATY-I----ECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp HHHHHTCSEE-E----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCeE-E----EEeCCCCCcCHHHHHHHHHHHH
Confidence 4443333222 2 25777777 5999999876543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=1.5e-13 Score=118.30 Aligned_cols=117 Identities=8% Similarity=0.145 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|||||||+|+|+|.... +++|.......... ++..+.++||||..... . .+......
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~---~----~~~~~~~~ 69 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR---Y----KLSDYLKT 69 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECCCCGGGT---H----HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecccccchh---h----HHHHHHHH
Confidence 68999999999999999999987652 22232333333333 67789999999976421 1 12333333
Q ss_pred hcCCceEEEEEEeCCCC-CC-HHHHHH----HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSR-FS-QEEEAA----VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~-~~-~~~~~~----l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.....+.+++++|+... .. ...... +..+....... .|+++|+||+|....
T Consensus 70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 126 (209)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhcc--CCeEEEEEeeccccc
Confidence 44455888999987622 11 222222 22333333333 499999999998765
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=2.9e-13 Score=119.35 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=91.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh---CCCccc------------cCCC--------------CCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL---GRRAFK------------ASAG--------------SSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~------------~~~~--------------~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|+.++|||||+..|+ |..... .+.. ..++|.......+.+ .
T Consensus 4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~ 82 (239)
T d1f60a3 4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 82 (239)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-C
Confidence 345799999999999999998885 321100 0000 135666666666666 7
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
++.++||||||+.| +..-+......+|++|+|+|+..+ ........+..+. .+|- +++
T Consensus 83 ~~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~-~~gv---~~i 147 (239)
T d1f60a3 83 KYQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLGV---RQL 147 (239)
T ss_dssp SEEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTTC---CEE
T ss_pred CEEEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHH-HcCC---CeE
Confidence 89999999999887 333344556678999999999743 2223344443333 3443 378
Q ss_pred EEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 141 IVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 141 ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
|+++||+|....+...+.+.... +..++...+
T Consensus 148 iv~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~ 179 (239)
T d1f60a3 148 IVAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 179 (239)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHH-----HHHHHHhcC
Confidence 99999999887654445544443 555665544
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.2e-13 Score=113.54 Aligned_cols=156 Identities=19% Similarity=0.137 Sum_probs=89.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
|..+|+++|.+|+|||||++.+++.... . ..+ .+.......+.. ++. .+.|+||||.... .
T Consensus 4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~-~-~~~--t~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~~------------~ 66 (175)
T d2bmja1 4 PELRLGVLGDARSGKSSLIHRFLTGSYQ-V-LEK--TESEQYKKEMLV-DGQTHLVLIREEAGAPDA------------K 66 (175)
T ss_dssp CEEEEEEECCTTTTHHHHHHHHHHSCCC-C-CCC--SSCEEEEEEEEE-TTEEEEEEEEECSSCCCH------------H
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCC-C-cCC--ccceeEEEEeec-CceEEEEEEeeccccccc------------c
Confidence 4589999999999999999999877642 2 111 111111122333 453 5889999996531 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.+.++|++|+|+|++++-+-.. ..+..++...... ....|+++|.||.|........+. ....+.+.
T Consensus 67 ----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~-------~~~~~~~~ 135 (175)
T d2bmja1 67 ----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG-------DARARALC 135 (175)
T ss_dssp ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSC-------HHHHHHHH
T ss_pred ----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchh-------HHHHHHHH
Confidence 1334699999999985432222 2233444433221 122389999999885432111110 01123343
Q ss_pred HhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 174 QLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 174 ~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...++ +++ ..||+++.|+++++..+...
T Consensus 136 ~~~~~~~~~------e~SAk~~~~v~~~F~~l~~~ 164 (175)
T d2bmja1 136 ADMKRCSYY------ETCATYGLNVDRVFQEVAQK 164 (175)
T ss_dssp HTSTTEEEE------EEBTTTTBTHHHHHHHHHHH
T ss_pred HHhCCCeEE------EeCCCCCcCHHHHHHHHHHH
Confidence 33322 222 25888889999988866543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=1.3e-12 Score=112.53 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|+|++...... . ++.+............+..+.++||||... ... ..+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~--~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~---~~~~~ 67 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT--Q-TSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRF---QLLDR 67 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCB--C-CCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHH---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc--c-CCeeEEEEEEEEeeeeeeeeeeeecccccc-------ccc---hhhhh
Confidence 3799999999999999999998765322 1 122222222222222466899999999532 111 22233
Q ss_pred hcCCceEEEEEEeCCCCCCH---HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQ---EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~---~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+..++++++|+|+++.... ....+...+..........|++||.||+|+...
T Consensus 68 ~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a 123 (207)
T d2fh5b1 68 FKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 123 (207)
T ss_dssp HGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred hhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence 45677999999998732211 112222333322221222489999999998755
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.38 E-value=8.6e-13 Score=110.74 Aligned_cols=169 Identities=14% Similarity=0.095 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+...+|+|||++|||||||+|+|++........ +.......+.+ ++..+.++|++|.......
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 73 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-----TLHPTSEELTI-AGMTFTTFDLGGHIQARRV----------- 73 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------C-----CCCCSCEEEEE-TTEEEEEEEECC----CCG-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcceec-----ccccceeEEEe-cccccccccccchhhhhhH-----------
Confidence 456899999999999999999999887532211 11122222333 5667888999886653221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC--CCCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHH--
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG--KKIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKE-- 171 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~-- 171 (371)
........+++++++|........... ..+..... .....|++++.||.|..... ...+.+.+..........
T Consensus 74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (186)
T d1f6ba_ 74 WKNYLPAINGIVFLVDCADHERLLESK--EELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 151 (186)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHH--HHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCC
T ss_pred HhhhhcccceeeeeeeccCccchHHHH--HHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhh
Confidence 233455679999999987443333221 12222111 11235999999999976541 111222221100000000
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.......+.+ .....||+++.|+++++++|.+.
T Consensus 152 ~~~~~~~~~~---~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 152 SLKELNARPL---EVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp CTTTCCSCCE---EEEECBTTTTBSHHHHHHHHHTT
T ss_pred hHHHhhcCCC---EEEEEeCCCCCCHHHHHHHHHHh
Confidence 0000011111 12347999999999999988653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.37 E-value=3.1e-12 Score=116.95 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCc-cceeEEE--------------------------------------
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSA-ITKTCEM-------------------------------------- 60 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~-~t~~~~~-------------------------------------- 60 (371)
+.|+|||..++|||||+|+|+|....+++..+.. +.+...+
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHHH
Confidence 5899999999999999999999987655432110 0000100
Q ss_pred ------------------EeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHHHHHhhhcCCceE-EEEEEeCCCCCCH
Q 040649 61 ------------------KTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIAKCIGMAKDGIHA-VLLVFSVRSRFSQ 119 (371)
Q Consensus 61 ------------------~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~~~~~~~~~~~d~-vl~v~d~~~~~~~ 119 (371)
..+..+.-..+.+|||||+........ .....+...+..+...++. +++|+++...+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccc
Confidence 001111224688999999986432211 1112223333333445565 4555566644443
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 120 EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 120 ~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.. .+..++..-+. ..++++|+||+|....
T Consensus 185 ~~--~~~~~~~~~~~--~~r~i~Vitk~D~~~~ 213 (306)
T d1jwyb_ 185 SD--ALQLAKEVDPE--GKRTIGVITKLDLMDK 213 (306)
T ss_dssp CS--HHHHHHHHCSS--CSSEEEEEECTTSSCS
T ss_pred cH--HHHHHHHhCcC--CCeEEEEEeccccccc
Confidence 32 33445544332 2499999999998755
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=2.3e-11 Score=110.56 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=75.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-ccceeEEEEe-----------------------------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-AITKTCEMKT----------------------------------- 62 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-~~t~~~~~~~----------------------------------- 62 (371)
-+.|+|+|..++|||||+|+|+|...++++..+. .+.+...+..
T Consensus 26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (299)
T d2akab1 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence 3579999999999999999999999766544321 1111111100
Q ss_pred -------------EEeeCCcEEEEEeCCCCCCCCcch--HHHHHHHHHHHhhhcCCc-eEEEEEEeCCCCCCHHHHHHHH
Q 040649 63 -------------TVLKDGQVVNVIDTPGLFDSSAES--EYVSKEIAKCIGMAKDGI-HAVLLVFSVRSRFSQEEEAAVH 126 (371)
Q Consensus 63 -------------~~~~~~~~i~liDTPG~~~~~~~~--~~~~~ei~~~~~~~~~~~-d~vl~v~d~~~~~~~~~~~~l~ 126 (371)
...+....+.+|||||+....... ......+...+..+...+ +++++|.++..+++..+ .+.
T Consensus 106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~~ 183 (299)
T d2akab1 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALK 183 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHH
T ss_pred CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HHH
Confidence 011122358899999998653221 111122223333333333 46677777775555543 334
Q ss_pred HHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 127 RLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+++...+. ..++++|+||+|...+
T Consensus 184 ~~~~~~~~--~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 184 IAKEVDPQ--GQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCT
T ss_pred HHHHhCcC--CCceeeEEeccccccc
Confidence 45544332 2489999999998865
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.34 E-value=5.5e-13 Score=118.11 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCccc--------------------------cCCCCCccceeEEEEeEEeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL---GRRAFK--------------------------ASAGSSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~---g~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (371)
+..+|+++|+.++|||||+..|+ |..... ......+.|.......+.+ .+
T Consensus 23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~ 101 (245)
T d1r5ba3 23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 101 (245)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-cc
Confidence 45689999999999999999984 321100 0000112333333333444 67
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCCCCCCeEE
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-------SQEEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~i 141 (371)
..++++||||..++ ...+......+|++++|+|+..+. .......+..+.. +|. ++++
T Consensus 102 ~~i~~iDtPGH~df-----------~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i---~~ii 166 (245)
T d1r5ba3 102 RRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHLV 166 (245)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSEE
T ss_pred ceeeeecccccccc-----------hhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCC---CeEE
Confidence 78999999998763 233334456679999999997542 2233444444433 343 3789
Q ss_pred EEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhcCCc----eEeecCcchhhHhhHHhHHHHHH
Q 040649 142 VVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLCDNR----WVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 142 lv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~~r----~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
+++||+|.... ....+.+.+.. +..++....+. .++| .+.||.+|.|+.++++
T Consensus 167 v~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v~~---VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 167 VVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY---MPVSAYTGQNVKDRVD 225 (245)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE---EECBTTTTBTTSSCCC
T ss_pred EEEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCCEE---EEeeccCCCCcccchh
Confidence 99999998743 22234444433 44444433210 1111 3468888888877654
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.31 E-value=4.7e-12 Score=110.55 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC---CCccc--------------------------cCCCCCccceeEEEEeEEeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG---RRAFK--------------------------ASAGSSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g---~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (371)
|..+|+++|+.++|||||+.+|+. ..... ......+.|.......+.+ ++
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~ 80 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 80 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CC
Confidence 458999999999999999998852 11000 0011123444444445555 78
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCCCCCCeEE
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFS-------QEEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~i 141 (371)
..+++|||||..+ +..-+......+|++|+|+|+..+.. ....+.+..+. .++. .++|
T Consensus 81 ~~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~-~~~~---~~iI 145 (224)
T d1jnya3 81 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMGL---DQLI 145 (224)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTTC---TTCE
T ss_pred ceeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHH-HhCC---CceE
Confidence 8999999999887 33444455667799999999986532 22222332332 3343 3799
Q ss_pred EEEeCCCCCCC
Q 040649 142 VVFTGGDDLED 152 (371)
Q Consensus 142 lv~tk~D~~~~ 152 (371)
+++||+|....
T Consensus 146 v~iNK~D~~~~ 156 (224)
T d1jnya3 146 VAVNKMDLTEP 156 (224)
T ss_dssp EEEECGGGSSS
T ss_pred EEEEcccCCCc
Confidence 99999998743
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=5.8e-12 Score=116.11 Aligned_cols=116 Identities=19% Similarity=0.264 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCcccc-----------CCCCCccceeEEEEeEEee---------------CCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFKA-----------SAGSSAITKTCEMKTTVLK---------------DGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~---g~~~~~~-----------~~~~~~~t~~~~~~~~~~~---------------~~~ 69 (371)
.++|+|+|+.++|||||+.+|+ |...... .....+.|.........+. ++.
T Consensus 17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 96 (341)
T d1n0ua2 17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 96 (341)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence 4579999999999999999996 3211000 0001123332222222221 234
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+++|||||+.++. .+....+.. +|++|+|+|+..++.......++..... . .|+++|+||+|.
T Consensus 97 ~inliDtPGh~dF~-------~ev~~al~~----~D~allVVda~eGv~~qT~~~~~~a~~~---~--~p~i~viNKiDr 160 (341)
T d1n0ua2 97 LINLIDSPGHVDFS-------SEVTAALRV----TDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVDR 160 (341)
T ss_dssp EEEEECCCCCCSSC-------HHHHHHHHT----CSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHHH
T ss_pred EEEEEcCCCcHHHH-------HHHHHHHhh----cCceEEEEecccCcchhHHHHHHHHHHc---C--CCeEEEEECccc
Confidence 69999999999863 234444443 4999999999999999988888877653 3 399999999996
Q ss_pred C
Q 040649 150 L 150 (371)
Q Consensus 150 ~ 150 (371)
.
T Consensus 161 ~ 161 (341)
T d1n0ua2 161 A 161 (341)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=3.1e-11 Score=102.70 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.+|||||||++.+. +.... ..|.......+.. .+..+.++||+|... .......
T Consensus 3 iKivllG~~~vGKTsll~r~~----f~~~~---~pTiG~~~~~~~~-~~~~~~~~D~~gq~~-----------~~~~~~~ 63 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR----IIHGQ---DPTKGIHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWFE 63 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH----HHHSC---CCCSSEEEEEEEE-TTEEEEEEEECC------------------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHh----cCCCC---CCeeeeEEEEEee-eeeeeeeecccceee-----------ecccccc
Confidence 689999999999999999993 22211 1233344445555 778899999999643 2333455
Q ss_pred hcCCceEEEEEEeCCCCCC--------HHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFS--------QEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDL 150 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~--------~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~ 150 (371)
.+.+++++++|++.+.... ......+..+...+... ...|+++|+||+|..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 124 (200)
T d1zcba2 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 124 (200)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence 6778899999999874321 11223333333333221 124999999999965
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=2.8e-11 Score=102.25 Aligned_cols=167 Identities=14% Similarity=0.106 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|..|+|||||++.+.....++. + .....+.. ....+.++||.|... +.....
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~~~t~----~-----~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~ 60 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGT----G-----IVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHSCCC----S-----EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCc----c-----EEEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence 46899999999999999999875443221 1 11222333 677899999999543 344456
Q ss_pred hhcCCceEEEEEEeCCCC--CC------HHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc--hhhHHHHhcccC-
Q 040649 99 MAKDGIHAVLLVFSVRSR--FS------QEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN--EKTLEDYLGLEC- 165 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~--~~------~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~--~~~l~~~l~~~~- 165 (371)
.++.+++++++|+|.+.. +. ......+......+.. ....|+++|+||+|..... ...+..+.....
T Consensus 61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~ 140 (195)
T d1svsa1 61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG 140 (195)
T ss_dssp GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence 678899999999988632 11 1111222222222211 1124999999999853110 001111000000
Q ss_pred C-------chHHHHHHh----cCCc-eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 166 P-------KPLKEILQL----CDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 166 ~-------~~l~~~~~~----~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. ..+...+.. +..+ ++.+ .+||+++.+|++++..+.+++-.
T Consensus 141 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~----~tSA~~~~nv~~~F~~v~~~il~ 193 (195)
T d1svsa1 141 SNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVFDAVTDVIIK 193 (195)
T ss_dssp CSSHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcccCCCcceeE----EEEeECCHhHHHHHHHHHHHHHh
Confidence 0 001111111 1122 2222 25888999999999998876543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=9.9e-11 Score=99.21 Aligned_cols=170 Identities=15% Similarity=0.131 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|.+|||||||++.+..... .. .+|.......+.. ....+.++||+|.... .....
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~~-----~pTiG~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~ 63 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG-SG-----VPTTGIIEYPFDL-QSVIFRMVDVGGQRSE-----------RRKWI 63 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS-SC-----CCCCSCEEEEEEC-SSCEEEEEECCCSTTG-----------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC-CC-----CceeeEEEEEEec-cceeeeeccccccccc-----------ccccc
Confidence 36899999999999999999975543 21 1233233334444 6778999999997642 23345
Q ss_pred hhcCCceEEEEEEeCCCCCC--------HHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCc--hhhHHHHhcccC-
Q 040649 99 MAKDGIHAVLLVFSVRSRFS--------QEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDN--EKTLEDYLGLEC- 165 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~--------~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~--~~~l~~~l~~~~- 165 (371)
..+.+++++++|++.++... ......+..+...+... ...|+++|+||.|..... ...+..+.....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~ 143 (200)
T d2bcjq2 64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG 143 (200)
T ss_dssp GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCS
T ss_pred ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccC
Confidence 56788999999998863211 11122223232222211 124999999999965221 012222221100
Q ss_pred -C-------chHHHHH-Hh---cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 166 -P-------KPLKEIL-QL---CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 166 -~-------~~l~~~~-~~---~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. .++...+ .. ....++.| ..||+++.+|.++++.|.+.+.+
T Consensus 144 ~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~----~tSAk~~~ni~~vF~~i~~~I~~ 196 (200)
T d2bcjq2 144 PQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRFVFAAVKDTILQ 196 (200)
T ss_dssp CSSCHHHHHHHHHHHHHTTCSCTTSCEEEE----ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCceEEE----EeEEEcCHhHHHHHHHHHHHHHH
Confidence 0 0111111 11 11223232 25788999999999999876653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.09 E-value=2.1e-10 Score=100.41 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=42.8
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.++||||..+. .........+. .....+++++++|+.....+...................|.++|+||+|
T Consensus 95 ~~~~~id~~g~~~~-----~~~~~~~~~~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D 168 (244)
T d1yrba1 95 NDYVLIDTPGQMET-----FLFHEFGVRLM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD 168 (244)
T ss_dssp CSEEEEECCSSHHH-----HHHSHHHHHHH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred cceeeeccccchhH-----HHHHHHHHHHH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence 35889999997542 11111111111 1235678999999875555444332222221111112238999999999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 169 ~~~~ 172 (244)
T d1yrba1 169 LLSE 172 (244)
T ss_dssp GCCH
T ss_pred cccH
Confidence 8865
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=6e-09 Score=95.28 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....+|+|.|+||+|||||++.|.
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~ 75 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFG 75 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHH
Confidence 346899999999999999999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.95 E-value=3.6e-10 Score=102.50 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~~~~~ 83 (371)
.+|++||.|+||||||+|+|++...+.. ..++.+|..+.......++ ...+.++|.||+....
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA 89 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 89 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence 7999999999999999999998765322 3445666555444333322 1368899999998764
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
......+..+...+. .+|++++|+|+.
T Consensus 90 ~~g~GLGn~fL~~ir----~~d~lihVV~~f 116 (296)
T d1ni3a1 90 STGVGLGNAFLSHVR----AVDAIYQVVRAF 116 (296)
T ss_dssp CSSSSSCHHHHHHHT----TCSEEEEEEECC
T ss_pred ccccccHHHHHHHhh----ccceeEEEEecc
Confidence 443334455666555 449999999875
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.92 E-value=2.2e-10 Score=105.04 Aligned_cols=88 Identities=16% Similarity=0.078 Sum_probs=43.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEE-------------e----------eCCcEEEEEeCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTV-------------L----------KDGQVVNVIDTP 77 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~-------------~----------~~~~~i~liDTP 77 (371)
.|++||.|+||||||+|+|+|.... ...++.+|..+...... + .....+.++|+|
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~--v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p 79 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVE--IANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCc--hhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence 6999999999999999999998752 23334444332211100 0 011358999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
|+....... ..+..........+|++++|+|+.
T Consensus 80 Gli~ga~~g----~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp -------------------CCCSSTTCSEEEEEEETT
T ss_pred Ccccchhcc----cchHHHHHHhhccceEEEEEeccc
Confidence 997643221 223333334456789999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.88 E-value=4.6e-10 Score=100.88 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=57.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~~~ 83 (371)
.+|++||.|+||||||+|+|++... ....++.+|..+....+..++. -.+.++|.||+....
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga 80 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence 6899999999999999999998765 2233445555544443333221 247799999998643
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
......+.++.+.+..+ |+++.|+|+.
T Consensus 81 ~~g~Glg~~FL~~ir~~----d~LihVVr~f 107 (278)
T d1jala1 81 SKGEGLGNKFLANIRET----DAIGHVVRCF 107 (278)
T ss_dssp HHHGGGTCCHHHHHHTC----SEEEEEEECS
T ss_pred ccCCCccHHHHHHHHhc----cceEEEeecc
Confidence 22223344566665544 9999999864
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.88 E-value=1.3e-09 Score=94.53 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|.+|||||||++.+...... .|.......+.. ++..+.++|++|.... .....
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~~--------pTiG~~~~~~~~-~~~~~~~~D~~Gq~~~-----------r~~w~ 65 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHVV--------LTSGIFETKFQV-DKVNFHMFDVGGQRDE-----------RRKWI 65 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHCC--------CCCSCEEEEEEE-TTEEEEEEECCCSTTT-----------TTGGG
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCcC--------CCCCeEEEEEEE-CcEEEEEEecCcccee-----------ccchh
Confidence 368999999999999999998633221 122222333444 7788999999996642 22234
Q ss_pred hhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCCCC--CCeEEEEEeCCCCCC
Q 040649 99 MAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLFGKKI--FDYMIVVFTGGDDLE 151 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~~~~~--~~~~ilv~tk~D~~~ 151 (371)
.++.+++++++|+|.+.. ........+..+...+..+. ..|++|++||+|+..
T Consensus 66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~ 128 (221)
T d1azta2 66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA 128 (221)
T ss_dssp GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence 567889999999998621 11222334455555554432 249999999999763
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.82 E-value=3.4e-09 Score=94.78 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=44.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~ 88 (371)
......+|+|+|.|++|||||+|+|.|.....++. .+++|...+.. . .+..+.++||||+..+......
T Consensus 108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~-~pG~Tr~~~~i---~-~~~~~~l~DTPGi~~p~~~~~~ 176 (273)
T d1puja_ 108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWV---K-VGKELELLDTPGILWPKFEDEL 176 (273)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE---E-ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCCceEEEEEecCccchhhhhhhhhccceEEECC-cccccccceEE---E-CCCCeEEecCCCccccCCccHH
Confidence 34456899999999999999999999988755433 34555443321 1 4567999999999866544433
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=1.3e-08 Score=87.03 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=45.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc----CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK----DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~----~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
+..+.||||||.... +.....++........ ..++-+++|+|+.. ...+...+......++ +.-+|
T Consensus 93 ~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~-----~~~lI 162 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT--GQNGLVQAKIFKEAVN-----VTGII 162 (213)
T ss_dssp TCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG--HHHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeecccc--CcchhhhhhhhccccC-----CceEE
Confidence 456899999997754 3444444444443322 23788999999972 2233222222222232 67788
Q ss_pred EeCCCCCCC
Q 040649 144 FTGGDDLED 152 (371)
Q Consensus 144 ~tk~D~~~~ 152 (371)
+||.|....
T Consensus 163 ~TKlDe~~~ 171 (213)
T d1vmaa2 163 LTKLDGTAK 171 (213)
T ss_dssp EECGGGCSC
T ss_pred EecccCCCc
Confidence 999997644
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.77 E-value=1.1e-07 Score=86.64 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=58.1
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHhCCCCCCeEEEEEeC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAV-HRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l-~~l~~~~~~~~~~~~ilv~tk 146 (371)
|..+.||.|.|.+... . .....+|.+++|+....+ .+...+ .-+.+. .=++|+||
T Consensus 143 g~d~iiiETVG~gq~e----------~----~~~~~~D~~v~v~~p~~G---D~iQ~~k~gilE~-------aDi~vvNK 198 (323)
T d2qm8a1 143 GFDVILVETVGVGQSE----------T----AVADLTDFFLVLMLPGAG---DELQGIKKGIFEL-------ADMIAVNK 198 (323)
T ss_dssp TCCEEEEEECSSSSCH----------H----HHHTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEEC
T ss_pred CCCeEEEeehhhhhhh----------h----hhhcccceEEEEeeccch---hhhhhhhhhHhhh-------hheeeEec
Confidence 3456777777766420 0 112346999999977622 222111 111222 66899999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+|..+. ......+.. .+...+...... -.........|+.++.|+++|++.|..+..
T Consensus 199 aD~~~~--~~~~~~~~~----~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 199 ADDGDG--ERRASAAAS----EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp CSTTCC--HHHHHHHHH----HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccc--hHHHHHHHH----HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 997755 332222111 022222211100 001112234688899999999999987655
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=2.7e-09 Score=91.81 Aligned_cols=61 Identities=26% Similarity=0.297 Sum_probs=38.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCcc-ceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAI-TKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~-t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+.+.+|+|+||+|||||+|+|+|.....++. ..+.. |+..+.+ .+ . ....||||||+-+..
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~--~l-~-~gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--KF-D-FGGYVVDTPGFANLE 161 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--EC-T-TSCEEESSCSSTTCC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEE--EE-C-CCcEEEeCCcccccc
Confidence 5688999999999999999999876543321 11222 3233332 23 2 235799999997653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=7.7e-08 Score=81.88 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=54.9
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc----CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK----DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~----~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
+..+.+|||||.... +.....++........ ..++-+++|+|+.. ...+..........++ +--+|
T Consensus 91 ~~d~ilIDTaGr~~~---d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~-----~~~lI 160 (211)
T d2qy9a2 91 NIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST--GQNAVSQAKLFHEAVG-----LTGIT 160 (211)
T ss_dssp TCSEEEECCCCCGGG---HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGG--THHHHHHHHHHHHHSC-----CCEEE
T ss_pred CCCEEEeccCCCccc---cHHHHHHHHHHHHHHhhhcccCcceeeeehhccc--CcchHHHHhhhhhccC-----CceEE
Confidence 446899999997643 3344455544433221 24688999999973 3333333333333333 66788
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
+||.|....-+. +-.+...++.++.++.+-
T Consensus 161 lTKlDe~~~~G~-------------~l~~~~~~~~Pi~~i~~G 190 (211)
T d2qy9a2 161 LTKLDGTAKGGV-------------IFSVADQFGIPIRYIGVG 190 (211)
T ss_dssp EECCTTCTTTTH-------------HHHHHHHHCCCEEEEECS
T ss_pred EeecCCCCCccH-------------HHHHHHHHCCCEEEEeCC
Confidence 999997644222 223444556666665543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=98.68 E-value=6.1e-08 Score=82.41 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=44.9
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh-cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA-KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~-~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
+..+.+|||||....+.........+...+... ...++-+++|+|+... ..+...+......++ +--+++||
T Consensus 88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~-----~~~lI~TK 160 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVIVTK 160 (207)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEEEEC
T ss_pred CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhccC-----CceEEEec
Confidence 457899999997754222111222233333222 2367889999999843 333333333333343 56778999
Q ss_pred CCCCCC
Q 040649 147 GDDLED 152 (371)
Q Consensus 147 ~D~~~~ 152 (371)
.|....
T Consensus 161 lDet~~ 166 (207)
T d1okkd2 161 LDGTAK 166 (207)
T ss_dssp TTSSCC
T ss_pred cCCCCC
Confidence 997644
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.66 E-value=4.3e-09 Score=90.82 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCccce-eEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAITK-TCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~t~-~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+.+.+|+|+||+|||||+|+|+|......+. ..+..|+ .... +.. +| ..||||||+-+..
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~-~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-SG--GLVADTPGFSSLE 162 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-TT--EEEESSCSCSSCC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--Eec-CC--CEEEECCcccccc
Confidence 3577899999999999999999976544321 1122232 2222 223 33 4699999997653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.65 E-value=5.2e-08 Score=83.05 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=43.4
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.+|||||....+. ......++....... .++-+++|+++.... ............++ +--+|+||
T Consensus 93 ~~~d~IlIDTaGr~~~~~-~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~--~~~~~~~~~~~~~~-----~~~lI~TK 162 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGE-EAALLEEMKNIYEAI--KPDEVTLVIDASIGQ--KAYDLASKFNQASK-----IGTIIITK 162 (211)
T ss_dssp TTCSEEEEECCCSCCTTC-HHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG--GHHHHHHHHHHHCT-----TEEEEEEC
T ss_pred cCCceEEEecCCcCccch-hhHHHHHHHHHHhhc--CCceEEEEEecccCc--chHHHHhhhhcccC-----cceEEEec
Confidence 345789999999754321 122233444443332 467899999987433 22223333333332 45578999
Q ss_pred CCCCCC
Q 040649 147 GDDLED 152 (371)
Q Consensus 147 ~D~~~~ 152 (371)
.|....
T Consensus 163 lDet~~ 168 (211)
T d1j8yf2 163 MDGTAK 168 (211)
T ss_dssp TTSCSC
T ss_pred ccCCCc
Confidence 997744
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=98.58 E-value=2.2e-07 Score=78.99 Aligned_cols=73 Identities=23% Similarity=0.253 Sum_probs=47.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.+|||||.... +.....++....... .++-+++|+++..+ ...........+.++ ..-+|+||.
T Consensus 92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~~-----~~~~I~TKl 159 (207)
T d1ls1a2 92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKVG-----VTGLVLTKL 159 (207)
T ss_dssp TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----CCEEEEECG
T ss_pred cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhCC-----CCeeEEeec
Confidence 457889999998764 334455555554433 56889999998733 344444444444443 556889999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 160 De~~~ 164 (207)
T d1ls1a2 160 DGDAR 164 (207)
T ss_dssp GGCSS
T ss_pred Ccccc
Confidence 97644
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.7e-06 Score=76.69 Aligned_cols=68 Identities=26% Similarity=0.308 Sum_probs=47.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEe--eCCcEEEEEeCCCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~~ 83 (371)
..+...|.|+|+.++|||+|+|.|+|... |..+.+..++|...-.+.... ..+..+.++||.|+++..
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~ 99 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 99 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence 34567899999999999999999998763 344444445555444433333 245579999999998754
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=1.7e-05 Score=73.46 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
-+++|||++|+|||+++..|..
T Consensus 44 ~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEECCCCCCHHHHHHHHHH
Confidence 3578999999999999987763
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=98.11 E-value=1.4e-05 Score=68.83 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|||||||+++|+|...+.++
T Consensus 28 ~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG 58 (240)
T d1g2912 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence 3468999999999999999999998876653
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=98.11 E-value=1.5e-06 Score=75.59 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|++|||||||++.|+|...+.++
T Consensus 27 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 57 (242)
T d1mv5a_ 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (242)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCCC
Confidence 4579999999999999999999998876653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=1.6e-06 Score=75.28 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..|+|+|++|||||||++.|+|...+.+
T Consensus 28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~ 57 (241)
T d2pmka1 28 QGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57 (241)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCCC
Confidence 456899999999999999999999876554
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=4.2e-06 Score=71.94 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|||||||++.|+|...+.++
T Consensus 25 ~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG 55 (232)
T d2awna2 25 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG 55 (232)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCC
Confidence 3468999999999999999999998876653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.07 E-value=9.9e-06 Score=66.14 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
+|+|+|++|+|||||++.|+|...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~ 27 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence 79999999999999999999866543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.04 E-value=1.7e-05 Score=68.26 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++++|++|||||||++.|+|...++++
T Consensus 31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG 61 (239)
T d1v43a3 31 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 61 (239)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCC
Confidence 3468999999999999999999999876653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.04 E-value=9.1e-06 Score=70.11 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|||||||+++|.|...+.++
T Consensus 30 ~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G 60 (242)
T d1oxxk2 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (242)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCcCCCCc
Confidence 3468999999999999999999998876654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.00 E-value=2.9e-06 Score=74.21 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~ 69 (253)
T d3b60a1 40 AGKTVALVGRSGSGKSTIASLITRFYDIDE 69 (253)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcccCCCc
Confidence 456899999999999999999999877554
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=3.6e-06 Score=73.46 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 39 ~Ge~vaivG~sGsGKSTLl~li~gl~~p~~ 68 (251)
T d1jj7a_ 39 PGEVTALVGPNGSGKSTVAALLQNLYQPTG 68 (251)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCCCc
Confidence 457899999999999999999999887654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=1.9e-05 Score=68.18 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 27 ~Gei~glvG~nGaGKSTLl~~l~G~~~p~~ 56 (238)
T d1vpla_ 27 EGEIFGLIGPNGAGKTTTLRIISTLIKPSS 56 (238)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999987655
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.95 E-value=1.5e-06 Score=76.04 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..|+|+|++|||||||++.|+|...+.+
T Consensus 43 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~ 72 (255)
T d2hyda1 43 KGETVAFVGMSGGGKSTLINLIPRFYDVTS 72 (255)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCccc
Confidence 456899999999999999999999877654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.90 E-value=1.1e-05 Score=69.74 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|++|||||||+++|+|...+.++
T Consensus 31 ~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G 61 (240)
T d1ji0a_ 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 3468999999999999999999998876553
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.66 E-value=9.8e-06 Score=68.20 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|||||||+++|+|...|.+
T Consensus 27 Gei~~l~G~NGsGKSTLl~~i~gl~~p~~ 55 (200)
T d1sgwa_ 27 GNVVNFHGPNGIGKTTLLKTISTYLKPLK 55 (200)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhcccccCC
Confidence 45799999999999999999999887655
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.64 E-value=1.3e-05 Score=68.60 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|||||||+++|.|...+.+
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~s 59 (230)
T d1l2ta_ 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59 (230)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCcchhhHhccCCCCCCc
Confidence 346899999999999999999999887655
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.00026 Score=60.12 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
|.+.++|.|.-|||||||+|.++..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence 5678999999999999999999854
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.54 E-value=1.7e-05 Score=67.91 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|||||||+++|+|...+.+
T Consensus 25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~p~s 54 (229)
T d3d31a2 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDS 54 (229)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCC
Confidence 446899999999999999999999887665
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2.5e-05 Score=67.30 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.+..++|+|++|||||||+++|.|...+.+
T Consensus 30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~s 59 (240)
T d3dhwc1 30 AGQIYGVIGASGAGKSTLIRCVNLLERPTE 59 (240)
T ss_dssp SSCEEEEEESTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCccccC
Confidence 346899999999999999999999887654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.50 E-value=2.6e-05 Score=69.01 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..|+|+|++|||||||+++|+|...+.+
T Consensus 61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~ 90 (281)
T d1r0wa_ 61 KGEMLAITGSTGSGKTSLLMLILGELEASE 90 (281)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCcCCC
Confidence 456899999999999999999999877554
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.47 E-value=2.8e-05 Score=67.79 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|||||||+++|+|...+.+
T Consensus 29 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~ 58 (254)
T d1g6ha_ 29 KGDVTLIIGPNGSGKSTLINVITGFLKADE 58 (254)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCcCCC
Confidence 346899999999999999999999887655
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.45 E-value=3.1e-05 Score=66.58 Aligned_cols=28 Identities=39% Similarity=0.351 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.++++|++|||||||+++|+|...+.++
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G 53 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 6789999999999999999998876553
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.40 E-value=4.2e-05 Score=66.72 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|||||||+++|+|...+.+
T Consensus 27 ~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~ 56 (258)
T d1b0ua_ 27 AGDVISIIGSSGSGKSTFLRCINFLEKPSE 56 (258)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCccCCC
Confidence 346899999999999999999999876554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.39 E-value=1.5e-05 Score=66.92 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+++|.|||||||+.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999983
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=7.1e-05 Score=60.09 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.|+|+|++|||||||++.|+.
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=5.5e-05 Score=64.89 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++-.++|+|++|||||||+++|+|..
T Consensus 24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~ 49 (231)
T d1l7vc_ 24 AGEILHLVGPNGAGKSTLLARMAGMT 49 (231)
T ss_dssp TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999999954
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.22 E-value=7.3e-05 Score=60.70 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|+|+|++|||||||++.|..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~ 29 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAA 29 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=0.0007 Score=58.96 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++++||++|+|||+++..|...
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999998744
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.11 E-value=0.00013 Score=58.74 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+++.+|+|+|++||||||+.+.|..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~ 27 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAA 27 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 3457899999999999999999974
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.04 E-value=0.00012 Score=58.73 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
++|+|+|++||||||+++.|.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999996
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.0071 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..++|.|++|+||||++..++.
T Consensus 34 ~~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999988864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.95 E-value=0.00022 Score=58.65 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++.+|+|+|+|||||||++..|+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999997
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.91 E-value=0.0003 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
..+..|.|+|.+||||||+.+.|.-
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999873
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.90 E-value=0.001 Score=57.25 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+...|+|.|++|+|||+++++|++
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~ 62 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAE 62 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhh
Confidence 345799999999999999999974
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.89 E-value=0.00024 Score=62.34 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=35.5
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
....+|+||+|+|+..|++..+..+.+.+ .. +|.++|+||+|+.+.
T Consensus 12 ~i~~~DvIl~V~DaR~P~ss~~~~l~~~~----~~---Kp~IlVlNK~DLv~~ 57 (273)
T d1puja_ 12 KLKLIDIVYELVDARIPMSSRNPMIEDIL----KN---KPRIMLLNKADKADA 57 (273)
T ss_dssp HGGGCSEEEEEEETTSTTTTSCHHHHHHC----SS---SCEEEEEECGGGSCH
T ss_pred HHHhCCEEEEEEECCCCCCCCCHHHHHHH----cC---CCeEEEEECccCCch
Confidence 34566999999999988887776554443 22 499999999998865
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.87 E-value=0.00028 Score=55.49 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+++|+|||||||+++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999998863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.00036 Score=57.66 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++.+.|+|+|++||||||+...|+..
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999743
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0015 Score=55.78 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.++|.|++|+||||++..++
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~ 55 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLA 55 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 47899999999999998875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00041 Score=55.51 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999999874
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.78 E-value=0.0004 Score=57.18 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..|+|+|++||||||++..|+.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999999873
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.0002 Score=58.68 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.-|+|+||+|+|||||++.|+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999843
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00032 Score=55.38 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|.-
T Consensus 3 k~I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.76 E-value=0.00027 Score=56.80 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
++|+|+|.+||||||+.+.|.
T Consensus 2 p~IvliG~~G~GKSTig~~La 22 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLA 22 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999986
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.71 E-value=0.00085 Score=60.15 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.+|+|.|++|||||||+|+|++..
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEeeccccchHHHHHHhhhc
Confidence 469999999999999999999644
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.70 E-value=0.00041 Score=55.35 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~ 24 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAA 24 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.69 E-value=0.00036 Score=57.30 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|+|+|++||||||+++.|..
T Consensus 4 m~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.67 E-value=0.00052 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|.|++||||||+.+.|...
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999854
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.00045 Score=56.42 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+||+||||||+++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 357899999999999999999754
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.00063 Score=55.20 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+++|.+||||||++..++
T Consensus 14 p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.63 E-value=0.00057 Score=55.89 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....|+|.|++|||||||.+.|.
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999986
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0077 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..+++.||+|+|||+++++|+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 5689999999999999999984
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.60 E-value=0.0005 Score=55.77 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|+|||||||+++.|+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.00054 Score=56.63 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++++||++|+|||+++..|...
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHH
Confidence 47899999999999999888743
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.59 E-value=0.00055 Score=55.29 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|.|++||||||+++.|.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999986
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.59 E-value=0.0007 Score=55.76 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...+|+|+|+|||||||+...|+-
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999984
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.58 E-value=0.00055 Score=54.87 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|.+|||||||++.|+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999998743
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.55 E-value=0.00051 Score=54.97 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La 21 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALA 21 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.0007 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+.-|+|+||+|||||||++.|+-.
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.47 E-value=0.00077 Score=53.88 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|.|++||||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46788899999999999999753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.46 E-value=0.0007 Score=55.12 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|+|||||||++..|..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.00063 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|.|++|+|||||+..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998744
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.00081 Score=55.21 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
++|+|+|++||||||....|+.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999873
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.43 E-value=0.00077 Score=54.78 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00071 Score=55.51 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 040649 22 VVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~ 42 (371)
|+|+||+|||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.37 E-value=0.00096 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|+|+|++||||||+...|..
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.00085 Score=54.41 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||.++.|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999986
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.34 E-value=0.00081 Score=58.00 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..|+|.|+||+|||||+.+|++..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00057 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.370 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+..|.|+|.+||||||+.+.|.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La 40 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALE 40 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34688899999999999999996
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.33 E-value=0.001 Score=54.79 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|+|+|||||||++..|+.
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999974
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.32 E-value=0.00086 Score=53.97 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.|+|+|++||||||+.+.|.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA 23 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELA 23 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.23 E-value=0.001 Score=54.68 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 040649 22 VVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g 41 (371)
|+|+||+||||||+++.|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0014 Score=54.62 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|.|++|||||||.+.|.
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~ 23 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIV 23 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999885
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0021 Score=53.65 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
-++|.|++|+||||++..++.
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999987654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.0012 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|.||||+||||++++|++.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.05 E-value=0.0016 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|.+||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999963
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.0021 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.++|.||||+||||+++.|+.
T Consensus 36 ~~~L~~GPpGtGKT~lA~~la~ 57 (238)
T d1in4a2 36 DHVLLAGPPGLGKTTLAHIIAS 57 (238)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999874
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.87 E-value=0.0074 Score=50.89 Aligned_cols=47 Identities=28% Similarity=0.251 Sum_probs=30.0
Q ss_pred CCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 102 DGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 102 ~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.++|.+++|+++.+ .++..-... .|.......+ +.+||+||+|+..+
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR--~Lv~a~~~~i--~pvIvlnK~DL~~~ 56 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDR--FLVLVEANDI--QPIICITKMDLIED 56 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHH--HHHHHHTTTC--EEEEEEECGGGCCC
T ss_pred cccCEEEEEEECCCCCCCHHHHHH--HHHHHHHcCC--CEEEEEeccccccc
Confidence 36799999998863 354443332 2222222233 88999999998866
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.82 E-value=0.002 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...+..|+|-|..||||||+++.|..
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 33456899999999999999999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0028 Score=53.97 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
....++|.||+|+||||++.+|+..
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999854
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.76 E-value=0.003 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
....++|.|++|+||||+++.|+.
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.71 E-value=0.003 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|.|.+||||||+.+.|.
T Consensus 3 p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999885
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.70 E-value=0.0024 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|+||||+|||.|.++|+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~ 71 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAK 71 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhh
Confidence 35689999999999999999985
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.67 E-value=0.013 Score=46.36 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
.++..|++.|+-|||||||++.++..--....+.++.-+.. ..+ .. .+..++=+|.=-+.+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y--~~-~~~~i~H~DlYRl~~ 91 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEY--NI-AGKMIYHFDLYRLAD 91 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEE--EE-TTEEEEEEECTTCSC
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE-Eee--cc-CCceEEEEEEeccCC
Confidence 34568999999999999999998743322222222222222 222 22 445666677654443
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.60 E-value=0.0037 Score=52.10 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.+..|.|.|.|||||||+.+.|.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~ 45 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELE 45 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999986
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.58 E-value=0.0036 Score=52.69 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|.|++|+||||+++.|+..
T Consensus 46 ~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 46 PHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.00088 Score=54.68 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
..+|+|++||||||++.+|.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999974
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0068 Score=53.81 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=23.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.++..|...++++||||+|||.|..+|+.
T Consensus 46 ~~~~~p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 46 GHEHKPVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp SCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence 34455666899999999999999999873
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.005 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+.|++.||+||||||+...|...
T Consensus 4 piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47888999999999999998743
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.24 E-value=0.0029 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|.|++|+|||++++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4556799999999999998743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0061 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+..|+|.|++|||||||.+.|.
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence 3455799999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.13 E-value=0.0035 Score=54.84 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.+.|+|.|.+||||||+.++|.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~ 25 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFD 25 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999999864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.00 E-value=0.0067 Score=50.44 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|++-||+||||||....|..
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5688889999999999999874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0066 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|.|++|+||||+++.|+..
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999998753
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.95 E-value=0.04 Score=46.00 Aligned_cols=84 Identities=19% Similarity=0.149 Sum_probs=45.6
Q ss_pred CCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 102 DGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 102 ~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
.++|.+++|+++.. .++..-...+-.+.... .+ +.+||+||+|+..+ .....+.. +..... .+-.+
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i--~pvIvlnK~DL~~~--~~~~~~~~------~~~~~~-~~~~v 75 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--EL--ETVMVINKMDLYDE--DDLRKVRE------LEEIYS-GLYPI 75 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TC--EEEEEECCGGGCCH--HHHHHHHH------HHHHHT-TTSCE
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CC--CEEEEEeCcccCCH--HHHHHHHH------hhcccc-cceeE
Confidence 36799999999874 45544332222222222 33 89999999998865 33332221 111111 11223
Q ss_pred EeecCcchhhHhhHHhHHHHHHHH
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLV 204 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i 204 (371)
+. .|++++.+++.|...+
T Consensus 76 ~~------vSa~~~~g~~~L~~~l 93 (225)
T d1u0la2 76 VK------TSAKTGMGIEELKEYL 93 (225)
T ss_dssp EE------CCTTTCTTHHHHHHHH
T ss_pred EE------eccccchhHhhHHHHh
Confidence 33 4555667888877764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.0073 Score=51.65 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|++.|++|+|||+++++|.+
T Consensus 43 ~giLl~GppGtGKT~la~aia~ 64 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAG 64 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHH
Confidence 4699999999999999999984
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.86 E-value=0.0044 Score=54.34 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L 39 (371)
.-+|+|++||||||++.+|
T Consensus 26 lnvlvG~NgsGKS~iL~Ai 44 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAI 44 (308)
T ss_dssp EEEEECCTTTCSTHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 4478999999999999988
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.0072 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..++|.|++|+||||+++.|+.
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHH
Confidence 3589999999999999998864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.0062 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
...|+|.|++|+|||+|+++|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3569999999999999999998543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.0087 Score=51.44 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.-|++.||+|+|||++++++.+
T Consensus 39 ~giLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHH
Confidence 4689999999999999999985
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.011 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=20.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+..|+|.|.+|||||||...|.
T Consensus 24 ~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 24 NKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEeECCCCCCHHHHHHHHH
Confidence 3345789999999999999998774
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.60 E-value=0.0091 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|.|++|+|||||++.++
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~ 50 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGI 50 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHH
Confidence 578899999999999999876
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.59 E-value=0.009 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|.|++|+||||++..|+.
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 588999999999999999974
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.50 E-value=0.01 Score=48.99 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|.|..||||||+.+.|-
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999885
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.01 Score=49.16 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|.|..||||||+.+.|.
T Consensus 4 ~iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 4 YIVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEECCCcCCHHHHHHHHH
Confidence 478999999999999999885
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.12 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..++|.|++.+||||+++++.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHH
Confidence 568999999999999999974
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.29 E-value=0.012 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.|++||||||++.+++..
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hceEEEEcCCCCCccHHHHHHhhh
Confidence 367999999999999999998854
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.27 E-value=0.01 Score=55.18 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|+++||||||||-|.++|++
T Consensus 50 sNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.23 E-value=0.0093 Score=54.40 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~ 40 (371)
-+|+|++|+||||++.+|.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999983
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.17 E-value=0.012 Score=53.18 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...+++.||||+|||+|+++|++
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~ 176 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLE 176 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=94.04 E-value=0.014 Score=52.76 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..+++++||||+|||-+.++|+.
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCcceeeeCCCCccHHHHHHHHHh
Confidence 446799999999999999999873
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.91 E-value=0.016 Score=47.06 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..+.|.|+||+|||+|+..++.
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 456889999999999999987764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.021 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.-|+|-|..||||||+++.|..
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999863
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.47 E-value=0.02 Score=46.76 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998873
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.46 E-value=0.024 Score=50.05 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++..|...++++|++|+|||.+.+.|.
T Consensus 48 ~~~kp~~~~lf~Gp~G~GKt~lak~la 74 (315)
T d1qvra3 48 DPNRPIGSFLFLGPTGVGKTELAKTLA 74 (315)
T ss_dssp CSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred CCCCCceEEEEECCCcchHHHHHHHHH
Confidence 345555578999999999999999876
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.013 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|-|+.||||||+++.|..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~ 24 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQ 24 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.028 Score=46.43 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.-|+|-|..||||||+++.|..
T Consensus 3 G~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 3 GALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 45688889999999999988753
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.028 Score=47.09 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..|+|=|.-||||||+++.|..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35889999999999999999973
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.80 E-value=0.025 Score=47.07 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++|.|++|+|||+|+..++-
T Consensus 33 ~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 33 TGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 446889999999999999988763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.76 E-value=0.03 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.-|++.|++|+||||+.-.|..
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999988774
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.45 E-value=0.042 Score=44.03 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.-|++.|++|+||||+.-.|.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999998776
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.36 E-value=0.22 Score=41.30 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.++|.|++.+||||+++++.
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhH
Confidence 57999999999999999864
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=92.26 E-value=0.12 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+..+.+.|++|+|||+|+-.++.
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHH
Confidence 345789999999999999877663
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.24 E-value=0.036 Score=46.47 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=19.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+..++|.|+||+|||+|.-.++
T Consensus 35 ~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 35 TQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 45688999999999999986654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.19 E-value=0.029 Score=49.59 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
-.++++|+||+|||.+.++|.+.
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 34566899999999999999864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.17 E-value=0.039 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|..||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999953
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.04 E-value=0.037 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 040649 22 VVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~ 42 (371)
+.+.|++|+|||.|+++++..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999743
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.02 E-value=0.051 Score=46.86 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
....|+|+|..|.|||||...++.
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999998864
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.74 E-value=0.053 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+.-|+|-|.-||||||+++.|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~ 24 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILY 24 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHH
Confidence 35679999999999999999986
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=91.53 E-value=0.044 Score=44.79 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+.-.+++.||+++|||+|+++|++.
T Consensus 52 Kkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 52 KKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHHHH
Confidence 3468999999999999999998743
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.43 E-value=0.056 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.++..++|.|++|+|||+|+-.++
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 345688999999999999987765
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=91.42 E-value=0.063 Score=40.56 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=18.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....+.+|.+++|+|||+++-.++
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHH
Confidence 344677899999999999875443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.064 Score=44.75 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+++..++|.|++|+|||+|.-.++
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999987776
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.36 E-value=0.063 Score=42.66 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.-|++.|++|+||||+.-.+.
T Consensus 15 g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999987765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.30 E-value=0.052 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++..++|.|+||+|||+|+-.++
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999999997765
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.12 E-value=0.045 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
..+++|+|.||+|||++++.++
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEEeCCCCcHHHHHHHHH
Confidence 4679999999999999998776
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.02 E-value=0.03 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+++|++|+|||++++++.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999864
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.75 E-value=0.07 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++-.++|.|+||+|||||+..++
T Consensus 34 ~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 34 GGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 45578899999999999976654
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=90.60 E-value=0.083 Score=45.29 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+....+.+.|++++|||+|+++|..
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~ 126 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456889999999999999999874
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.59 E-value=0.41 Score=40.76 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+.+..+.|.|++|+|||+|+-.++.... ..+..+.+|||-|-++
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q---------------------~~g~~~vyIDtE~~~~ 101 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVANAQ---------------------AAGGVAAFIDAEHALD 101 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHHHHH---------------------HTTCEEEEEESSCCCC
T ss_pred ccceeEEEecCCCcHHHHHHHHHHHHHh---------------------cCCCEEEEEECCccCC
Confidence 3456789999999999999855552111 0334567899999775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.49 E-value=0.075 Score=43.67 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=18.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L 39 (371)
++..++|.|+||+|||+|+-.+
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHH
Confidence 4568899999999999997544
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.091 Score=39.08 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
..+.+|.+-|-+|+||||+.++|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~ 27 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALL 27 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHH
Confidence 456899999999999999999986
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.11 Score=44.04 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 9 DWKPTSSSNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 9 ~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+|-...-- ++..++|+|++|+|||||+-.|+
T Consensus 20 d~li~G~~-pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 20 DYVLPNMV-AGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp CEEETTEE-TTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhCCcc-CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45443333 24567899999999999986554
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.59 E-value=0.73 Score=37.06 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...+++.|++|+|||++...+..
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988874
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.07 E-value=0.11 Score=46.02 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..+|+|=|.-|+||||+++.|...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999743
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=88.02 E-value=0.1 Score=44.77 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.8
Q ss_pred EEEEEcCCCCcHHHHH
Q 040649 21 TVVLLGRTGNGKSATG 36 (371)
Q Consensus 21 ~I~lvG~~GsGKSTli 36 (371)
.++|+|++|+||||++
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4788999999999874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.91 E-value=0.12 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
..+|+|=|.-|+||||+++.|..
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~ 26 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVA 26 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC
T ss_pred ceEEEEECCcCCCHHHHHHHHHH
Confidence 36799999999999999999974
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.91 E-value=0.14 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..+|+|=|.-|+||||+++.|...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 478999999999999999999854
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=87.53 E-value=0.12 Score=44.88 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=13.8
Q ss_pred EEEEEcCCCCcHHHHH
Q 040649 21 TVVLLGRTGNGKSATG 36 (371)
Q Consensus 21 ~I~lvG~~GsGKSTli 36 (371)
.++|.|++|+||||++
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3788999999999875
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=85.38 E-value=0.24 Score=44.16 Aligned_cols=20 Identities=35% Similarity=0.523 Sum_probs=16.9
Q ss_pred CeEEEEEcCCCCcHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNS 38 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~ 38 (371)
...++|.|++|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHH
Confidence 35789999999999998754
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.95 E-value=0.29 Score=42.16 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+-+++++|.+|+|||+|+..|..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHH
Confidence 457999999999999999988764
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=81.48 E-value=0.43 Score=40.15 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCcHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNS 38 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~ 38 (371)
.+|+|.|..|+||||+.-.
T Consensus 2 r~Iai~gKGGvGKTT~a~n 20 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQN 20 (269)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHH
Confidence 5789999999999999644
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=81.17 E-value=0.39 Score=40.26 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.|+|.|++|+||+++.+.|-
T Consensus 25 pvlI~Ge~GtGK~~~A~~ih 44 (247)
T d1ny5a2 25 PVLITGESGVGKEVVARLIH 44 (247)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECCCCcCHHHHHHHHH
Confidence 47899999999999999996
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.02 E-value=0.43 Score=40.46 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L 39 (371)
...|.+.|..|+||||+.-.|
T Consensus 8 p~~i~~sGKGGVGKTTvaa~l 28 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCAT 28 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHH
Confidence 457789999999999976554
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.83 E-value=0.23 Score=36.81 Aligned_cols=19 Identities=32% Similarity=0.167 Sum_probs=15.0
Q ss_pred CCeEEEEEcCCCCcHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATG 36 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTli 36 (371)
++.+++|.++||+|||..+
T Consensus 6 ~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TTCEEEECCCTTSSTTTTH
T ss_pred cCCcEEEEcCCCCChhHHH
Confidence 3467889999999999543
|