Citrus Sinensis ID: 040650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPVSYQRLST
Secondary Structure (PSIPRED)
ccHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHccccHHHcccccccHHHHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHccccHHHHHHHHcccccccHHHccccccccHHHHHHHccHHHHHHHHccHHHHHHccccccHHHHEEcccHHHHHHHHHHHHcHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHccc
Coil and Loop (DISEMBL)
mhkalvegdgevVHFLgkldlesrpvvednglmtplhraavdgdggvITEIASSEslakltsndETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYpvsyqrlst
Flexible Loop (DISEMBL)
mhkalvegdgevvhflgkldlesrpVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLypvsyqrlst
Low Complexity Region (SEG)
MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPVSYQRLST
Disordered region (IsUnstruct)
*********GEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIAS***LAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPVSY*****
Disordered Region (DISOPRED)
MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPV**QR***
Disordered Region (DISEMBL)
MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPVSYQRLST
Disordered Region (DISPRO)
MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPVSYQRL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLYPVSYQRLST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.764	0.198	0.285	0.0002
P46683	200	Ankyrin repeat-containing	yes	no	0.75	0.51	0.333	0.0009

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSES--LA 58
           +H A  +G GE+V FL    ++   +   NG  T LH AA +G   ++ ++   ++  + 
Sbjct: 129 LHTAASQGHGEIVCFLLDKGVDLAAIARSNG-KTALHSAARNGHTVIVKKLIEKKAGMVT 187

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
           ++    +TAL +AVK    +   +LME         L ++ D +GN+ LH+A
Sbjct: 188 RVDKKGQTALHMAVKGQNTEIVDVLMEADG-----SLINSADNKGNTPLHIA 234

Arabidopsis thaliana (taxid: 3702)

>sp|P46683|YAR1_YEAST Ankyrin repeat-containing protein YAR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAR1 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 21  LESRPVVEDNGLMTPLHRAAVDGDG--GVITEIASSE--SLAKLTSNDETALILAVKNSQ 76
           L S P+ +++     L   A D D    + T + S E  S  K + +D TAL +A  N  
Sbjct: 3   LHSEPLDQEDQDTIILDARAGDLDSLKDIFTTLVSPELLSTCKESESDSTALHMAAANGH 62

Query: 77  IDAFKILMEETKRHN----LEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
           I+  + ++E   R N    L+   +  +K GN+ LH A+LN KL VVK+L 
Sbjct: 63  IETVRYILETVSRANSAEDLKAFVNEVNKTGNTALHWASLNGKLDVVKLLC 113

Required for normal rate of cell proliferation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
255550978	595	ankyrin repeat-containing protein, putat	0.889	0.203	0.401	9e-11
255539875	430	ankyrin repeat-containing protein, putat	0.698	0.220	0.438	2e-10
224134294	218	predicted protein [Populus trichocarpa]	0.816	0.509	0.396	6e-10
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.889	0.268	0.379	3e-09
359476356	601	PREDICTED: ankyrin repeat-containing pro	0.889	0.201	0.377	4e-09
296081857	470	unnamed protein product [Vitis vinifera]	0.889	0.257	0.377	4e-09
297739323	371	unnamed protein product [Vitis vinifera]	0.595	0.218	0.445	5e-09
225447366	462	PREDICTED: ankyrin repeat-containing pro	0.595	0.175	0.445	6e-09
224142976	591	predicted protein [Populus trichocarpa]	0.889	0.204	0.385	8e-09
147765315	580	hypothetical protein VITISV_020094 [Viti	0.889	0.208	0.370	1e-08

>gi|255550978|ref|XP_002516537.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223544357|gb|EEF45878.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
           +H A  +G  E    L K D +   + +DN   TPLH AA+ G   VI E+   S E   
Sbjct: 176 LHLACSKGHLETTRELLKYDADLSSL-QDNDGRTPLHWAAIKGRVNVIDEVLSVSLEPAE 234

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVV 118
            +T N ET L L VKN+Q DA K LME     N+ +L +  DK+GN+ LHLA   KL  +
Sbjct: 235 MITKNGETVLHLGVKNNQFDAVKYLMETL---NITNLINRPDKDGNTALHLATAGKLSAM 291

Query: 119 KILMLRM 125
            I +L++
Sbjct: 292 VIYLLKL 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539875|ref|XP_002511002.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550117|gb|EEF51604.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 28  EDNGLMTPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDAFKILME 85
           +D   M PL  A   G   VI+ +  A  ES+ KLT   ET   LA K+ Q  AF+ L+E
Sbjct: 107 KDKFSMIPLQTAISFGYTEVISTLIAARPESVRKLTPQRETLFHLAAKHHQSSAFEALLE 166

Query: 86  ETKRHNLEHLFSATDKEGNSILHLAALNKLI-VVKILM 122
           E K+   EHL    D++GN++LH+AA NKLI +VK+L+
Sbjct: 167 EVKKLKQEHLLHRKDRQGNNVLHIAASNKLIGIVKLLL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134294|ref|XP_002321784.1| predicted protein [Populus trichocarpa] gi|222868780|gb|EEF05911.1| predicted protein [Populus trichocarpa]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 5/116 (4%)

Query: 2   HKALVEGDGEVVHFLGKLDLE-SRPVVEDNGLMTPLHRAAVDGDGGVITEIAS--SESLA 58
           H A   G  E+V  L K+D++  R  +E    MTPLH AA+ G   VI+ + S   + + 
Sbjct: 74  HIAAANGHVEIVKELMKVDIKLCR--LEGRQKMTPLHYAAIKGRAEVISAMLSDCPDCIE 131

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK 114
             T   E AL LAVKN++ +A KIL +  K  N E+L +  D++GN++LHLA+  K
Sbjct: 132 DETDRKENALHLAVKNNRFEAIKILGDWIKDMNKEYLLNMKDEQGNTVLHLASWKK 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
           +H A   G  EVV  L K D +   + E     TPLH AA+ G   V+  I  A  E + 
Sbjct: 74  IHMAAANGHQEVVMELLKFDWKXCHL-EGRDEKTPLHCAAMKGKVNVVRVILSACKECIE 132

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVV 118
            +T   E AL LAVKNSQ +A ++L+E+ +    E + +  D+ GN+ILHLA   K    
Sbjct: 133 DVTVQKEIALHLAVKNSQYEAVRVLVEKVREMRREDVLNMKDEHGNTILHLATWRKQRQA 192

Query: 119 KILM 122
           K L+
Sbjct: 193 KFLL 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476356|ref|XP_003631824.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
           +H A  +G  E+   L +LD +   + +DN   TPLH AA+ G   +I EI   S +S  
Sbjct: 176 LHLACSKGHLEITRELLRLDPDLTSL-QDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAE 234

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVV 118
             T + ET L LAVKN+Q +A K L E     N+  L +  D +GN+ILHLA   KL   
Sbjct: 235 MRTEHGETVLHLAVKNNQYEAVKYLTETL---NISQLLNTPDSDGNTILHLATAGKLTTT 291

Query: 119 KILMLRM 125
            + +L++
Sbjct: 292 VLYLLKL 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081857|emb|CBI20862.3| unnamed protein product [Vitis vinifera]

 Score = 66.2 bits (160), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 6/127 (4%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
           +H A  +G  E+   L +LD +   + +DN   TPLH AA+ G   +I EI   S +S  
Sbjct: 156 LHLACSKGHLEITRELLRLDPDLTSL-QDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAE 214

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVV 118
             T + ET L LAVKN+Q +A K L E     N+  L +  D +GN+ILHLA   KL   
Sbjct: 215 MRTEHGETVLHLAVKNNQYEAVKYLTETL---NISQLLNTPDSDGNTILHLATAGKLTTT 271

Query: 119 KILMLRM 125
            + +L++
Sbjct: 272 VLYLLKL 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739323|emb|CBI28974.3| unnamed protein product [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 34  TPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
           TPLH AA+ G   VI E+      S+  +T   ETA+ LAVKN+Q+ A K L+E  K  N
Sbjct: 16  TPLHLAAITGRTEVIRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSN 75

Query: 92  LEHLFSATDKEGNSILHLAALNK 114
           ++ L +A D++GN++LHLA   K
Sbjct: 76  IQDLLNAKDEDGNTVLHLATARK 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447366|ref|XP_002274771.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 34  TPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
           TPLH AA+ G   VI E+      S+  +T   ETA+ LAVKN+Q+ A K L+E  K  N
Sbjct: 107 TPLHLAAITGRTEVIRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSN 166

Query: 92  LEHLFSATDKEGNSILHLAALNK 114
           ++ L +A D++GN++LHLA   K
Sbjct: 167 IQDLLNAKDEDGNTVLHLATARK 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142976|ref|XP_002324803.1| predicted protein [Populus trichocarpa] gi|222866237|gb|EEF03368.1| predicted protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 68/127 (53%), Gaps = 6/127 (4%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASS--ESLA 58
           +H    +G  EV   L + D E   + +DN   TPLH AA+ G   VI EI S+  ES  
Sbjct: 175 LHLCCKKGHLEVTRELLRFDAELSSL-QDNDGRTPLHWAAIKGRVNVIDEILSTSLESAE 233

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVV 118
            +T + ET L L VKN+Q +A K L   T+  N+  L    D +GN+ LHLA   KL  +
Sbjct: 234 VITKHGETVLHLGVKNNQYEAVKYL---TEMLNITKLVDKPDNDGNTALHLATAGKLSTM 290

Query: 119 KILMLRM 125
            I +L++
Sbjct: 291 VIYLLKL 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147765315|emb|CAN66947.1| hypothetical protein VITISV_020094 [Vitis vinifera]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 6/127 (4%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
           +H A  +G  E+   L +LD +   + +DN   TPLH AA+ G   +I EI   S +S  
Sbjct: 176 LHLACSKGHLEITRELLRLDPDLTSL-QDNDGRTPLHWAAMKGRVNIIDEILSVSLQSAE 234

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVV 118
             T + ET L L VKN+Q +A K L E     N+  L +  D +GN+ILHLA   KL   
Sbjct: 235 MRTEHGETVLHLXVKNNQYEAVKYLTETL---NISQLLNTPDSDGNTILHLATAGKLTTT 291

Query: 119 KILMLRM 125
            + +L++
Sbjct: 292 VLYLLKL 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2012873	578	AT1G10340 "AT1G10340" [Arabido	0.801	0.188	0.345	8.2e-10
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.889	0.271	0.318	4.7e-08
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.580	0.183	0.386	5.7e-08
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.852	0.213	0.312	1.4e-07
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.889	0.284	0.323	2.5e-07
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.786	0.178	0.336	2.6e-07
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.882	0.271	0.325	7.2e-07
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.852	0.221	0.272	7.3e-07
SGD|S000006160	200	YAR1 "Ankyrin-repeat containin	0.757	0.515	0.330	8.3e-07
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.647	0.183	0.378	2.2e-06

TAIR|locus:2012873 AT1G10340 "AT1G10340" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 8.2e-10, P = 8.2e-10
 Identities = 39/113 (34%), Positives = 59/113 (52%)

Query:     1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSE--SLA 58
             +H A  +GD E+   L  LD      +  NGL +PLH A + G   ++ E       S +
Sbjct:   175 LHHACDKGDFELTTILLGLDQGLEEALNPNGL-SPLHLAVLRGSVVILEEFLDKVPLSFS 233

Query:    59 KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
              +T + ET   LA +N  +DAF + M E+   N + L   TD+ GN++LH+AA
Sbjct:   234 SITPSKETVFHLAARNKNMDAF-VFMAESLGINSQILLQQTDESGNTVLHIAA 285

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 42/132 (31%), Positives = 69/132 (52%)

Query:     1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE--IASSESLA 58
             +H A+ EG   +V  L K+D +   +    G MTP H+    G+  ++TE  +A    + 
Sbjct:    75 LHLAIEEGQTRLVLSLLKVDSDLVRLRGREG-MTPFHQVVRRGETDLMTEFLLACPGCIK 133

Query:    59 KLTSNDETALILAVKNSQIDAFKILM------EETKRHNLEHLF-SATDKEGNSILHLAA 111
                 N ETAL +AV N + +  ++L+       +T   +LE  F +  D++GN+ LH+AA
Sbjct:   134 DANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEMQFLNKRDQDGNTALHIAA 193

Query:   112 L-NKLIVVKILM 122
               N+   VKIL+
Sbjct:   194 YQNRFKAVKILV 205

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query:    33 MTPLHRAAVDGDGGVITE--IASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKR- 89
             MTPLH     GD  ++TE  +A  ES+     N ETAL +AV N + +  K+L     R 
Sbjct:   106 MTPLHLVVKKGDANLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRL 165

Query:    90 HNLE------HLFSATDKEGNSILHLAA 111
             H  +      H+ +  D++GN+ILHLAA
Sbjct:   166 HKSDAASTEIHVLNKRDRDGNTILHLAA 193

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 39/125 (31%), Positives = 71/125 (56%)

Query:     1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSE-SLA- 58
             +H A  +G  EVV+FL +L      + + NG  T LH A+ +G   VI  + +SE ++A 
Sbjct:   139 LHTAATQGHTEVVNFLLELGSSLAGIAKSNG-KTALHSASRNGHVKVIKALLASEPAIAI 197

Query:    59 KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIV 117
             ++    +TAL +AVK + ++  + L++   R ++    +  D +GN+ LH+AA   +  +
Sbjct:   198 RMDKKGQTALHMAVKGTNVEVVEELIK-ADRSSI----NIADTKGNTALHIAARKGRSQI 252

Query:   118 VKILM 122
             VK+L+
Sbjct:   253 VKLLL 257

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 42/130 (32%), Positives = 66/130 (50%)

Query:     1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE--IASSESLA 58
             +H A+     E+   L K+D  S   +   G MTPLH  A  GD  ++T+  +A  ES+ 
Sbjct:    75 LHLAVENDQVELALELVKVD-PSLVRIRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIK 133

Query:    59 KLTSNDETALILAVKNSQIDAFKILME-ETKRHNLEHLF----SATDKEGNSILHLAAL- 112
              +  N ET L + + N + +  K+L     K  + + +F    +  D+ GN++LHLAA  
Sbjct:   134 DVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLAAYE 193

Query:   113 NKLIVVKILM 122
             N   VVK L+
Sbjct:   194 NNDKVVKQLV 203

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 39/116 (33%), Positives = 62/116 (53%)

Query:     1 MHKALVEGDGEVVHFLGKLDL--ESRPVVEDNGLMTPLHRAAVDGDGGVITE-IASSESL 57
             +HKA   G+ E+   L  +D+  E    V+ +GL TPLHRA ++G   ++ E +  + S 
Sbjct:   201 LHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGL-TPLHRAVINGSVEILKEFLCKAPSS 259

Query:    58 AKLTSND--ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
               +T+    ET   LA K  +  AF I M ++   N+  L  + D E N++LH+AA
Sbjct:   260 FNITTQGTIETVFHLAAKYQKTKAF-IFMAQSA--NIRQLLYSLDAEDNTVLHVAA 312

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 41/126 (32%), Positives = 64/126 (50%)

Query:     1 MHKALVEGDGEVVHFLGKLDLESRPV-VEDNGLMTPLHRAAVDGDGGVITEIASS--ESL 57
             +H A   G  E V     L +E +   ++D    TPLH A + G   VI EI +S  + L
Sbjct:    51 LHAAAAAGQVETVR--ATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVASCVDCL 108

Query:    58 AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LI 116
                T   +TAL LAV + +I+A   ++E     N   + +  D++GN+ LHLA   K   
Sbjct:   109 EDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLATWRKNRQ 168

Query:   117 VVKILM 122
             V+++L+
Sbjct:   169 VIEVLV 174

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 7.3e-07, P = 7.3e-07
 Identities = 34/125 (27%), Positives = 64/125 (51%)

Query:     1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSES--LA 58
             +H A  +G GE+V FL    ++   +   NG  T LH AA +G   ++ ++   ++  + 
Sbjct:   129 LHTAASQGHGEIVCFLLDKGVDLAAIARSNG-KTALHSAARNGHTVIVKKLIEKKAGMVT 187

Query:    59 KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL-NKLIV 117
             ++    +TAL +AVK    +   +LME         L ++ D +GN+ LH+A   N+  +
Sbjct:   188 RVDKKGQTALHMAVKGQNTEIVDVLMEADGS-----LINSADNKGNTPLHIAVRKNRAEI 242

Query:   118 VKILM 122
             V+ ++
Sbjct:   243 VQTVL 247

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

SGD|S000006160 YAR1 "Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 114 (45.2 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 37/112 (33%), Positives = 58/112 (51%)

Query:    19 LDLESRPVVEDNGLMTPLHRAAVDGDG--GVITEIASSESLA--KLTSNDETALILAVKN 74
             + L S P+ +++     L   A D D    + T + S E L+  K + +D TAL +A  N
Sbjct:     1 MGLHSEPLDQEDQDTIILDARAGDLDSLKDIFTTLVSPELLSTCKESESDSTALHMAAAN 60

Query:    75 SQIDAFKILMEETKRHN----LEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
               I+  + ++E   R N    L+   +  +K GN+ LH A+LN KL VVK+L
Sbjct:    61 GHIETVRYILETVSRANSAEDLKAFVNEVNKTGNTALHWASLNGKLDVVKLL 112

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IGI;IMP

GO:0051082 "unfolded protein binding" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IGI;IMP

GO:0006970 "response to osmotic stress" evidence=IMP

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 36/95 (37%), Positives = 53/95 (55%)

Query:    20 DLESRPVVEDNGLMTPLHRAAVDGDGGVITEIA--SSESLAKLTS-NDETALILAVKNSQ 76
             DL+   +V ++GL TPLH AAV     ++   +  +  S   LT  ++ET   LAV++  
Sbjct:    76 DLKLAELVNNDGL-TPLHCAAVSNSIKILKVFSHKTPSSFDILTQPHNETVFHLAVRHKN 134

Query:    77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
             + AFK + +  K H LE L    DK GN++LH AA
Sbjct:   135 LKAFKFMAQ--KVH-LEKLLYKPDKYGNTVLHTAA 166

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-04

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.4 bits (126), Expect = 9e-10
 Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 10/124 (8%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASS-ESLAK 59
           +H A   G  EVV  L  L+  +    +DN   TPLH AA +G   ++  +      +  
Sbjct: 11  LHLAASNGHLEVVKLL--LENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 60  LTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVV 118
              +  T L LA +N  +D  K+L++     N      A DK+G + LHLAA    L VV
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN------ARDKDGRTPLHLAAKNGHLEVV 122

Query: 119 KILM 122
           K+L+
Sbjct: 123 KLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 29  DNGLMTPLHRAAVDGDGGVITE-IASSESLAKLTSNDETALILAVKNSQIDAFKILMEET 87
           D    TPLH AA +G   V+   + +   +    ++  T L LA KN  ++  K+L+E+ 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 88  KRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKILM 122
              N      A DK+GN+ LHLAA    L VVK+L+
Sbjct: 64  ADVN------ARDKDGNTPLHLAARNGNLDVVKLLL 93

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 8/88 (9%)

Query: 36  LHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHL 95
           LH AA +G+  ++  +    +   L   D TAL LA +N  ++  K+L+E     N    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD-TALHLAARNGNLEIVKLLLEHGADVN---- 55

Query: 96  FSATDKEGNSILHLAALNKLI-VVKILM 122
             A DK+GN+ LHLAA N  + +VK+L+
Sbjct: 56  --AKDKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 2  HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSES-LAKL 60
          H A   G+ E+V  L  L+  +   + D    T LH AA +G+  ++  +    + +   
Sbjct: 2  HLAAKNGNLELVKLL--LEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 61 TSNDETALILAVKNSQIDAFKILME 85
            +  TAL LA +N  ++  K+L+E
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.9 bits (81), Expect = 8e-04
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 33 MTPLHRAAVDGDGGVITEIASS-ESLAKLTSNDETALILAVKNSQIDAFKIL 83
           T LH+AA+ G   ++  +      + +   +  TAL +A +N  ++  K+L
Sbjct: 2  RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02741	169	hypothetical protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.92
PHA02884	300	ankyrin repeat protein; Provisional	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
KOG0510	929	consensus Ankyrin repeat protein [General function	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02876	682	ankyrin repeat protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02795	437	ankyrin-like protein; Provisional	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
PHA02798	489	ankyrin-like protein; Provisional	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.86
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.85
PHA02989	494	ankyrin repeat protein; Provisional	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02730	672	ankyrin-like protein; Provisional	99.83
PHA02730	672	ankyrin-like protein; Provisional	99.83
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.8
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.79
PHA02743	166	Viral ankyrin protein; Provisional	99.78
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.77
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.76
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.74
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.73
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.72
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.71
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.71
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.71
KOG0514	452	consensus Ankyrin repeat protein [General function	99.71
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.7
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.65
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.63
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.52
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.5
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.47
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.3
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.23
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.2
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.17
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.17
KOG0522	560	consensus Ankyrin repeat protein [General function	99.11
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.1
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.08
PF13606	30	Ank_3: Ankyrin repeat	99.06
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.98
PF13606	30	Ank_3: Ankyrin repeat	98.96
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.95
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.94
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
KOG0522	560	consensus Ankyrin repeat protein [General function	98.88
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.75
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.73
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.72
KOG0511	516	consensus Ankyrin repeat protein [General function	98.63
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.59
KOG0511	516	consensus Ankyrin repeat protein [General function	98.48
KOG2384	223	consensus Major histocompatibility complex protein	98.45
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.31
KOG2384	223	consensus Major histocompatibility complex protein	98.0
KOG2505	591	consensus Ankyrin repeat protein [General function	97.73
KOG2505	591	consensus Ankyrin repeat protein [General function	97.71
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.66
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.52
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.41
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.61
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.29
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.04
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	85.11
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.88

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.1e-32  Score=161.08  Aligned_cols=122  Identities=29%  Similarity=0.385  Sum_probs=110.1

Q ss_pred             CchhhhcCChhhhhHhhc-cCCCCCcccccCCCCcHHHHHHHcCChhhHHHh--hcccCccccCCCCCcHHHHHHHhCCH
Q 040650            1 MHKALVEGDGEVVHFLGK-LDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQI   77 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l--~~~~~~~~~~~~~~t~l~~a~~~~~~   77 (136)
                      |||||+.|+.+++++|++ .+..++  ..|..||||||.|+..|+-++++.|  +.+++++..+..|.|+||+|+..|+.
T Consensus        42 LHwa~S~g~~eiv~fLlsq~nv~~d--dkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~  119 (226)
T KOG4412|consen   42 LHWACSFGHVEIVYFLLSQPNVKPD--DKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRL  119 (226)
T ss_pred             eeeeeecCchhHHHHHHhcCCCCCC--CccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChh
Confidence            799999999999999995 555555  8899999999999999999999988  66999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccch
Q 040650           78 DAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSY  131 (136)
Q Consensus        78 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~  131 (136)
                      ++.++|++.|+.      ++.+|..|.||||.|+.-| .+++++|+..| .+.++
T Consensus       120 eIaqlLle~ga~------i~~kD~~~qtplHRAAavGklkvie~Li~~~-a~~n~  167 (226)
T KOG4412|consen  120 EIAQLLLEKGAL------IRIKDKQGQTPLHRAAAVGKLKVIEYLISQG-APLNT  167 (226)
T ss_pred             hHHHHHHhcCCC------CcccccccCchhHHHHhccchhhHHHHHhcC-CCCCc
Confidence            999999999988      7799999999999999999 99999999999 44443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.2e-30  Score=152.08  Aligned_cols=122  Identities=22%  Similarity=0.179  Sum_probs=115.5

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.||..|+.++||.|+.+ +++++  ..+..|.|+||||+..|+.+++++| +.++.++++|..|.||||-|+..|.++
T Consensus        76 lhia~s~g~~evVk~Ll~r~~advn--a~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklk  153 (226)
T KOG4412|consen   76 LHIAASNGNDEVVKELLNRSGADVN--ATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLK  153 (226)
T ss_pred             hhhhhhcCcHHHHHHHhcCCCCCcc--eecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchh
Confidence            7999999999999999988 88888  9999999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+..|+.      +|.+|..|+||||.|..-| .++...|+++|++...
T Consensus       154 vie~Li~~~a~------~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  154 VIEYLISQGAP------LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             hHHHHHhcCCC------CCcccccCccHHHHHHhccCchHHHHHHHhccceee
Confidence            99999999988      8899999999999998888 9999999999976543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=152.11  Aligned_cols=118  Identities=18%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCC-CcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSND-ETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~-~t~l~~a~~~~~~~   78 (136)
                      ||+|+..|+.+++++|++.|++++  ..|..|+||||+|+..|+.+++++| ..+++++.++..| .||||+|+..|+.+
T Consensus        65 Lh~Aa~~g~~eiV~lLL~~Gadvn--~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         65 LHQAATLEDTKIVKILLFSGMDDS--QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            355666666666666666666555  5566666666666666666666666 5555555555444 25555555555555


Q ss_pred             HHHHHHHHhhhcchhhhhcccc-cCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           79 AFKILMEETKRHNLEHLFSATD-KEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      ++++|+++++.        ..| ..|.||||+|+..| .+++++|+++|+++
T Consensus       143 ivk~LL~~~~~--------~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~  186 (284)
T PHA02791        143 IVSYFLSEIPS--------TFDLAILLSCIHITIKNGHVDMMILLLDYMTST  186 (284)
T ss_pred             HHHHHHhcCCc--------ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            55555554432        112 13556666666666 66666666666543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=4.1e-26  Score=149.52  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=108.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..  .|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        34 Lh~Aa~~g~~eiv~~Ll~~ga~~n--~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ei  109 (284)
T PHA02791         34 LYYAIADNNVRLVCTLLNAGALKN--LL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQT  109 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCc--CC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            689999999999999999998887  44  478999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCC-hHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGN-SILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~-t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++.++..|+ ||||+|+..| .+++++|+++++..
T Consensus       110 vk~Ll~~gad------in~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791        110 VKLFVKKNWR------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHCCCC------cCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            9999999998      668888885 8999999999 99999999987654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.7e-26  Score=157.50  Aligned_cols=122  Identities=23%  Similarity=0.193  Sum_probs=82.8

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      |.|+..|+.+++++|++.|.... ...+..|.||||+|+..|+.+++++| ..|++++.++..|.||||+|+..|+.+++
T Consensus        73 ~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v  151 (413)
T PHA02875         73 HDAVEEGDVKAVEELLDLGKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI  151 (413)
T ss_pred             HHHHHCCCHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            45555555555555555554443 23345667777777777777777777 77777777777777777777777777777


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++..
T Consensus       152 ~~Ll~~g~~------~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~  196 (413)
T PHA02875        152 ELLIDHKAC------LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDY  196 (413)
T ss_pred             HHHHhcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCc
Confidence            777777766      5567777777777777777 7777777777766543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=5.6e-26  Score=139.05  Aligned_cols=121  Identities=14%  Similarity=0.048  Sum_probs=107.9

Q ss_pred             CchhhhcCCh----hhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhh---HHHh-hcccCccccC-CCCCcHHHHH
Q 040650            1 MHKALVEGDG----EVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGV---ITEI-ASSESLAKLT-SNDETALILA   71 (136)
Q Consensus         1 l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~---~~~l-~~~~~~~~~~-~~~~t~l~~a   71 (136)
                      ||.||+.|+.    +++++|++.+..++  ..|..|+||||+|+..|..+.   +++| ..+++++.++ ..|.||||+|
T Consensus        24 l~~a~~~g~~~~l~~~~~~l~~~g~~~~--~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A  101 (166)
T PHA02743         24 FLRICRTGNIYELMEVAPFISGDGHLLH--RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA  101 (166)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhhcchhhh--ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence            5789999998    56667778888877  889999999999999988665   7888 9999999998 5899999999


Q ss_pred             HHhCCHHHHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           72 VKNSQIDAFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        72 ~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +..++.+++++|+. .|++      ++.+|..|+||||+|+..+ .+++++|+++|++..
T Consensus       102 ~~~g~~~iv~~Ll~~~gad------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743        102 ASTKNYELAEWLCRQLGVN------LGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             HHhCCHHHHHHHHhccCCC------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999996 7888      6789999999999999999 999999999997653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2.9e-26  Score=158.27  Aligned_cols=121  Identities=20%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccccc-CCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVED-NGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+||..++++++++|+++|+++|  ... .-+.||||+|+.+|+..++++| +.|++++.+|.+|.+|+|+|++.++.-
T Consensus        82 LHWAAiNNrl~v~r~li~~gadvn--~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~  159 (600)
T KOG0509|consen   82 LHWAAINNRLDVARYLISHGADVN--AIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA  159 (600)
T ss_pred             eeHHHHcCcHHHHHHHHHcCCCcc--ccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence            799999999999999999999999  666 6789999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++-+|+..|++      ++.+|.+|+|||++|+.+| ...+++|+..|+...
T Consensus       160 ~vayll~~~~d------~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~  205 (600)
T KOG0509|consen  160 LVAYLLSKGAD------IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL  205 (600)
T ss_pred             HHHHHHHhccc------CCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc
Confidence            99999999988      6699999999999999999 555888988887644

>PHA02741 hypothetical protein; Provisional

Probab=99.94  E-value=7e-26  Score=139.08  Aligned_cols=128  Identities=17%  Similarity=0.150  Sum_probs=113.2

Q ss_pred             CchhhhcCChhhhhHhhc------cCCCCCcccccCCCCcHHHHHHHcCC----hhhHHHh-hcccCccccCC-CCCcHH
Q 040650            1 MHKALVEGDGEVVHFLGK------LDLESRPVVEDNGLMTPLHRAAVDGD----GGVITEI-ASSESLAKLTS-NDETAL   68 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~------~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~l-~~~~~~~~~~~-~~~t~l   68 (136)
                      ||+|++.|+.++++.|+.      .+.+++  ..|..|.||||+|+..|+    .+++++| ..+++++.++. .|.|||
T Consensus        25 Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in--~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpL  102 (169)
T PHA02741         25 FHEAARCGCFDIIARFTPFIRGDCHAAALN--ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTAL  102 (169)
T ss_pred             HHHHHHcCCHHHHHHHHHHhccchhhhhhh--ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHH
Confidence            689999999999999854      245666  889999999999999998    5788998 89999999885 899999


Q ss_pred             HHHHHhCCHHHHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccchhccCC
Q 040650           69 ILAVKNSQIDAFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSYQRLST  136 (136)
Q Consensus        69 ~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~~~~~~  136 (136)
                      |+|+..++.+++++|+. .|++      ++.+|..|+||||+|+..+ .+++++|++.++....|.+.+|
T Consensus       103 h~A~~~~~~~iv~~Ll~~~g~~------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~  166 (169)
T PHA02741        103 HLAAHRRDHDLAEWLCCQPGID------LHFCNADNKSPFELAIDNEDVAMMQILREIVATSRGFSNENT  166 (169)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhcCccccCC
Confidence            99999999999999997 4887      7799999999999999999 9999999999887766766544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=154.82  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=114.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus       106 L~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~ei  183 (413)
T PHA02875        106 LHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAI  183 (413)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCC-ChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEG-NSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~-~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|+++|++      ++..+..| .||+|+|+..| .+++++|+++|+++..
T Consensus       184 v~~Ll~~ga~------~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        184 CKMLLDSGAN------IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHHHhCCCC------CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            9999999999      66777776 58899999999 9999999999998653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.3e-25  Score=152.26  Aligned_cols=127  Identities=20%  Similarity=0.227  Sum_probs=112.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..|..|.||||+|+..++.+++++| +.+++++..+..|.||||+|+..|+.++
T Consensus       128 Lh~A~~~~~~~~v~~Ll~~gad~n--~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~i  205 (434)
T PHA02874        128 LHYAIKKGDLESIKMLFEYGADVN--IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYAC  205 (434)
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCCC--CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc-------------------------hhhhhcccccCCChHHHHHHhcC--HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHN-------------------------LEHLFSATDKEGNSILHLAALNK--LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~-------------------------~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~Ll~~g~~~~  129 (136)
                      +++|++.|++..                         ....++.+|..|+||||+|+..+  .+++++|+++|+++.
T Consensus       206 v~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        206 IKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS  282 (434)
T ss_pred             HHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC
Confidence            999999987643                         11335677888999999999865  899999999998764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=8.3e-25  Score=153.19  Aligned_cols=121  Identities=21%  Similarity=0.192  Sum_probs=83.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChh----------------------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGG----------------------------------   46 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~----------------------------------   46 (136)
                      ||+|++.|+.+++++|++.|++++  ..|..|.||||+||..|+.+                                  
T Consensus        41 Lh~A~~~g~~e~vk~Ll~~gadvn--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~  118 (477)
T PHA02878         41 LHQAVEARNLDVVKSLLTRGHNVN--QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFK  118 (477)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHH
Confidence            577777777777777777777776  67777777777777654432                                  


Q ss_pred             ------------------------------hHHHh-hcccCccccCCC-CCcHHHHHHHhCCHHHHHHHHHHhhhcchhh
Q 040650           47 ------------------------------VITEI-ASSESLAKLTSN-DETALILAVKNSQIDAFKILMEETKRHNLEH   94 (136)
Q Consensus        47 ------------------------------~~~~l-~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~   94 (136)
                                                    ++++| ..|++++.++.. |.||||+|+..|+.+++++|+++|++     
T Consensus       119 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad-----  193 (477)
T PHA02878        119 IILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN-----  193 (477)
T ss_pred             HHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC-----
Confidence                                          34444 555666666665 77777777777777777777777776     


Q ss_pred             hhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           95 LFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        95 ~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                       ++.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus       194 -~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        194 -VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             -CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence             5566667777777777766 777777777666543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.4e-24  Score=136.26  Aligned_cols=121  Identities=16%  Similarity=0.200  Sum_probs=103.6

Q ss_pred             Cchhhhc--CChhhhhHhhccCCCCCccccc-CCCCcHHHHHHHc---CChhhHHHh-hcccCccccCCCCCcHHHHHHH
Q 040650            1 MHKALVE--GDGEVVHFLGKLDLESRPVVED-NGLMTPLHRAAVD---GDGGVITEI-ASSESLAKLTSNDETALILAVK   73 (136)
Q Consensus         1 l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~---~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~   73 (136)
                      ||+|+..  ++.+++++|+++|++++  ..+ ..|.||||+|+..   +..+++++| +.|++++.+|..|.||||.|+.
T Consensus        55 Lh~a~~~~~~~~eiv~~Ll~~gadvn--~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~  132 (209)
T PHA02859         55 IFSCLEKDKVNVEILKFLIENGADVN--FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMC  132 (209)
T ss_pred             HHHHHHcCCCCHHHHHHHHHCCCCCC--ccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            5778764  48999999999999998  775 5799999998753   478999999 9999999999999999999876


Q ss_pred             h--CCHHHHHHHHHHhhhcchhhhhcccccCCChHHHH-HHhcC-HHHHHHHHHhccCcc
Q 040650           74 N--SQIDAFKILMEETKRHNLEHLFSATDKEGNSILHL-AALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        74 ~--~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~-a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .  ++.+++++|++.|++      ++.+|..|.||||. |+..+ .+++++|+++|+++.
T Consensus       133 ~~~~~~~iv~~Li~~gad------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~  186 (209)
T PHA02859        133 NFNVRINVIKLLIDSGVS------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN  186 (209)
T ss_pred             hccCCHHHHHHHHHcCCC------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            4  579999999999988      77899999999996 45667 999999999998654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=152.06  Aligned_cols=120  Identities=21%  Similarity=0.198  Sum_probs=88.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHh-CCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKN-SQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~-~~~~   78 (136)
                      ||+|+..|+.+++++|++.|++++  ..|..|.||||+|+..++.+++++| ..|++++.+|..|.||||+|+.. ++.+
T Consensus       172 Lh~A~~~~~~~iv~~Ll~~gad~n--~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~  249 (477)
T PHA02878        172 LHYATENKDQRLTELLLSYGANVN--IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYD  249 (477)
T ss_pred             HHHHHhCCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHH
Confidence            577777777777777777777776  6777777777777777777777777 77777777777777777777765 5677


Q ss_pred             HHHHHHHHhhhcchhhhhccccc-CCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDK-EGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~-~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.++. .|.||||+|  .+ .+++++|+++|+++..
T Consensus       250 iv~~Ll~~gad------vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        250 ILKLLLEHGVD------VNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS  295 (477)
T ss_pred             HHHHHHHcCCC------CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC
Confidence            77777777777      556654 677777777  34 6777777777776543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.6e-24  Score=159.58  Aligned_cols=123  Identities=21%  Similarity=0.266  Sum_probs=107.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.||..|+.++++.|++.|.+++  ..|..|.||||+|+..|+.+++++| ..|++++.+|..|.||||.|+..|+.++
T Consensus       529 L~~Aa~~g~~~~l~~Ll~~G~d~n--~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~i  606 (823)
T PLN03192        529 LLTVASTGNAALLEELLKAKLDPD--IGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKI  606 (823)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHH
Confidence            467899999999999999999998  8999999999999999999999999 8899999999999999987766666555


Q ss_pred             H-------------------------------HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           80 F-------------------------------KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        80 ~-------------------------------~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      +                               +.|+++|++      ++.+|..|+||||+|+..| .+++++|+++|++
T Consensus       607 v~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd  680 (823)
T PLN03192        607 FRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN------VDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD  680 (823)
T ss_pred             HHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence            4                               455555665      7799999999999999999 9999999999987


Q ss_pred             ccch
Q 040650          128 PVSY  131 (136)
Q Consensus       128 ~~~~  131 (136)
                      +...
T Consensus       681 v~~~  684 (823)
T PLN03192        681 VDKA  684 (823)
T ss_pred             CCCC
Confidence            6543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=5.6e-25  Score=151.94  Aligned_cols=120  Identities=26%  Similarity=0.289  Sum_probs=110.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+++|+..+++.|+++|++++  ..|.+|.+++|.|+.+|+.-.+-+| ..+++++.+|.+|+||||+|+..|....
T Consensus       116 LHWAar~G~~~vv~lLlqhGAdpt--~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~  193 (600)
T KOG0509|consen  116 LHWAARNGHISVVDLLLQHGADPT--LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF  193 (600)
T ss_pred             chHHHHcCcHHHHHHHHHcCCCCc--eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH
Confidence            799999999999999999999999  9999999999999999999999999 8889999999999999999999999887


Q ss_pred             HHHHHHHhhhcchhhhhcccc-cCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATD-KEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +..|+..|+.      +..+| +.|.||||+|+..| ..++. |+..|+.+.
T Consensus       194 v~~LL~f~a~------~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~  238 (600)
T KOG0509|consen  194 VRRLLKFGAS------LLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADL  238 (600)
T ss_pred             HHHHHHhccc------ccccccccCCchHHHHHhcCCcceEe-hhhhcCCcc
Confidence            9999999998      66777 99999999999999 88888 555554443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.2e-24  Score=148.73  Aligned_cols=123  Identities=23%  Similarity=0.253  Sum_probs=110.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC---------------------cccccCCCCcHHHHHHHcCChhhHHHh-hcccCcc
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR---------------------PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLA   58 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~---------------------~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~   58 (136)
                      ||.|+..|+.+++++|++.|++..                     ++..+..|.||||+|+..|+.+++++| ..|++++
T Consensus        72 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n  151 (434)
T PHA02874         72 LLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN  151 (434)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC
Confidence            578889999998888887765421                     126788999999999999999999999 9999999


Q ss_pred             ccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           59 KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        59 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .+|..|.||||+|+..++.+++++|+++|++      ++..+..|.||||+|+..| .+++++|+++|+...
T Consensus       152 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~------~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~  217 (434)
T PHA02874        152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY------ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIM  217 (434)
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999998      6689999999999999999 999999999998654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.4e-24  Score=141.53  Aligned_cols=114  Identities=11%  Similarity=0.140  Sum_probs=101.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccc----cCCCCcHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVE----DNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~----~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~   74 (136)
                      ||.|++.|+.+++++|+++|++++  ..    +..|.||||+|+..++.+++++| ..|++++.++ ..|.||||.|+..
T Consensus        37 L~~A~~~~~~eivk~LL~~GAdiN--~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~  114 (300)
T PHA02884         37 LYSSIKFHYTDIIDAILKLGADPE--APFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLH  114 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcc--ccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc
Confidence            477889999999999999999998  65    45899999999999999999999 9999999864 6799999999999


Q ss_pred             CCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHH
Q 040650           75 SQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM  122 (136)
Q Consensus        75 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll  122 (136)
                      ++.+++++|++.|++      ++.+|..|.||||+|+..+ .+++..+.
T Consensus       115 ~~~eivklLL~~GAd------in~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        115 GCLKCLEILLSYGAD------INIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            999999999999999      7799999999999999866 55544443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=5.2e-24  Score=149.22  Aligned_cols=126  Identities=20%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             chhh--hcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcC--ChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC
Q 040650            2 HKAL--VEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG--DGGVITEI-ASSESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         2 ~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      |+|+  ..|+.+++++|++.|++++  ..+..|.||||+|+..+  +.+++++| +.|++++.++..|.||||+|+..|+
T Consensus       111 ~~A~~~~~~~~~iv~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~  188 (480)
T PHA03100        111 LYAISKKSNSYSIVEYLLDNGANVN--IKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGN  188 (480)
T ss_pred             hHHHhcccChHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCC
Confidence            4444  4444444444444444444  44444444444444444  44444444 4444444444444444444444444


Q ss_pred             HHHHHHHHHHhhhcc-----------------------------------hhhhhcccccCCChHHHHHHhcC-HHHHHH
Q 040650           77 IDAFKILMEETKRHN-----------------------------------LEHLFSATDKEGNSILHLAALNK-LIVVKI  120 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~-----------------------------------~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~  120 (136)
                      .+++++|+++|+++.                                   .+..++.+|..|.||||+|+..| .+++++
T Consensus       189 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~  268 (480)
T PHA03100        189 IDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKY  268 (480)
T ss_pred             HHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            444444444433321                                   00114566777777777777777 777777


Q ss_pred             HHHhccCcc
Q 040650          121 LMLRMLYPV  129 (136)
Q Consensus       121 Ll~~g~~~~  129 (136)
                      |+++|+++.
T Consensus       269 Ll~~gad~n  277 (480)
T PHA03100        269 LLDLGANPN  277 (480)
T ss_pred             HHHcCCCCC
Confidence            777777443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=8.2e-24  Score=148.23  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=101.6

Q ss_pred             hhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHH--HcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhC--CHH
Q 040650            4 ALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAA--VDGDGGVITEI-ASSESLAKLTSNDETALILAVKNS--QID   78 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~--~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~--~~~   78 (136)
                      |+..++.+++++|++.|++++  ..+..|.||||+|+  ..|+.+++++| ..|++++..+..|.||||+|+..+  +.+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~--~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVN--APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCC--CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH
Confidence            788888888888888888877  77888888888888  88888888888 888888888888888888888888  888


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++++|+++|++      ++.++..|.||||+|+..| .+++++|+++|+.+.
T Consensus       158 iv~~Ll~~g~d------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  203 (480)
T PHA03100        158 ILKLLIDKGVD------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN  203 (480)
T ss_pred             HHHHHHHCCCC------cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc
Confidence            88888888887      6688889999999999999 999999999998765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=3.1e-24  Score=144.50  Aligned_cols=118  Identities=22%  Similarity=0.257  Sum_probs=95.7

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      ..|+..||+++||.|+++|++++  ......+|||-.||.-|+.+++++| ++++++++.|+.|.|-||+|+..|+.+++
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~VN--~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASVN--DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCccc--cccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence            34667788888888888887777  6666677888888888888888888 88888888888888888888888888888


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      ++|++.|++      ++.++..|.|+||-+++.| .+++++|+++|+.
T Consensus       167 qyLle~gAD------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  167 QYLLEQGAD------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK  208 (615)
T ss_pred             HHHHHhCCC------cchhcccCchHHHhhhhcccHHHHHHHHhCCce
Confidence            888888888      6688888888888888888 8888888887764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=2.1e-23  Score=147.69  Aligned_cols=126  Identities=24%  Similarity=0.248  Sum_probs=113.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-h-cc-cCccccCCCCCcHHHHHHHhCCH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-A-SS-ESLAKLTSNDETALILAVKNSQI   77 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~-~~-~~~~~~~~~~~t~l~~a~~~~~~   77 (136)
                      ||+||+.|+.++++.|+..|++++  .++.++.||||.|+.+|++..++-| + .+ ...+..|..|.||||+|+.+|+.
T Consensus       277 LH~a~r~G~~~svd~Ll~~Ga~I~--~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~  354 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGFGASIN--SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHD  354 (929)
T ss_pred             HHHHHHcCChhHHHHHHHcCCccc--ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHH
Confidence            699999999999999999999999  8999999999999999999999988 4 44 35677788999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhhc--ccccCCChHHHHHHhcC-HHHHHHHHHhccCccchhc
Q 040650           78 DAFKILMEETKRHNLEHLFS--ATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSYQR  133 (136)
Q Consensus        78 ~~~~~Ll~~~~~~~~~~~~~--~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~~~  133 (136)
                      +++++|+..|+..     .+  ..|.+|.||||.|+..| ..+|+.|+++|++.-.+++
T Consensus       355 ~v~qlLl~~GA~~-----~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~  408 (929)
T KOG0510|consen  355 RVVQLLLNKGALF-----LNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK  408 (929)
T ss_pred             HHHHHHHhcChhh-----hcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence            9999999999982     22  45999999999999999 9999999999998855554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.2e-23  Score=129.55  Aligned_cols=118  Identities=18%  Similarity=0.198  Sum_probs=104.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcC--ChhhHHHh-hcccCccccC-CCCCcHHHHHHHh--
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG--DGGVITEI-ASSESLAKLT-SNDETALILAVKN--   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~--   74 (136)
                      ||.|++.|+.+.++.|++.   .+  ..+..|.||||+|+..+  +.+++++| +.|++++.++ ..|.||||+|+..  
T Consensus        25 L~~A~~~~~~~~vk~Li~~---~n--~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~   99 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKF---VN--DCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNK   99 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHh---hh--ccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCc
Confidence            5789999999999999975   34  67889999999999854  89999999 9999999987 5899999998764  


Q ss_pred             -CCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHh--cC-HHHHHHHHHhccCcc
Q 040650           75 -SQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL--NK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        75 -~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~--~~-~~~~~~Ll~~g~~~~  129 (136)
                       +..+++++|+++|++      ++.+|..|.||||+|+.  .+ .+++++|+++|+++.
T Consensus       100 ~~~~eiv~~Ll~~gad------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin  152 (209)
T PHA02859        100 NVEPEILKILIDSGSS------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL  152 (209)
T ss_pred             cccHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence             479999999999999      77999999999999876  46 999999999998764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=7.3e-23  Score=143.15  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=77.3

Q ss_pred             hhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcC---ChhhHHHh-hcccCccccCCCCCcHHHHHHHhC-CHH
Q 040650            4 ALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG---DGGVITEI-ASSESLAKLTSNDETALILAVKNS-QID   78 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~---~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~-~~~   78 (136)
                      ++..++.+++++|++.|++++  ..+..|.||||+|+..+   ..+++++| +.|++++.++..|.||||+|+..+ ..+
T Consensus        21 ~~~~~~~~~v~~Ll~~ga~vn--~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGADVN--FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             cCCCCCHHHHHHHHHcCCCcc--cCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            455566666666666666666  66666666666666666   66666666 666666666666666776666666 366


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHH--hcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAA--LNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~--~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++++|+++|++      ++.+|..|.||||+|+  ..+ .+++++|+++|+++.
T Consensus        99 iv~lLl~~ga~------in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~  146 (471)
T PHA03095         99 VIKLLIKAGAD------VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN  146 (471)
T ss_pred             HHHHHHHcCCC------CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC
Confidence            66666666666      5566666666666666  334 666666666666543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=6.9e-24  Score=142.82  Aligned_cols=114  Identities=19%  Similarity=0.258  Sum_probs=108.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |.-||..|+++++|+|+++|++++  ..|+.|.|-|++||..|+.+++++| +.|++++.++..|+|+||.++.+|+.++
T Consensus       121 LraACfDG~leivKyLvE~gad~~--IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  121 LRAACFDGHLEIVKYLVEHGADPE--IANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             HHHHHhcchhHHHHHHHHcCCCCc--ccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHH
Confidence            346899999999999999999999  9999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHH
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILML  123 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~  123 (136)
                      +++|+.+|+..+       +|..|.|||..|+..| .+++++|++
T Consensus       199 vq~Ll~~ga~i~-------~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  199 VQLLLKHGAKID-------VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHhCCceee-------ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999998743       6778999999999999 999999996

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=1.5e-23  Score=127.02  Aligned_cols=120  Identities=11%  Similarity=0.007  Sum_probs=98.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC-----cccccCCCCcHHHHHHHcCChh---hHHHh-hcccCccccC-CCCCcHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR-----PVVEDNGLMTPLHRAAVDGDGG---VITEI-ASSESLAKLT-SNDETALIL   70 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~-----~~~~~~~g~~~l~~a~~~~~~~---~~~~l-~~~~~~~~~~-~~~~t~l~~   70 (136)
                      ||+||+.|+.+  +.+...+...+     +...|..|.||||+|+..|..+   ++++| ..+++++.++ ..|.||||+
T Consensus        21 Lh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~   98 (154)
T PHA02736         21 LHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHI   98 (154)
T ss_pred             HHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHH
Confidence            68999999843  33322221111     1246889999999999999874   57788 9999999998 489999999


Q ss_pred             HHHhCCHHHHHHHHHH-hhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           71 AVKNSQIDAFKILMEE-TKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        71 a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      |+..++.+++++|+.+ |++      ++.+|..|+||||+|+..| .+++++|+++|+..
T Consensus        99 A~~~~~~~i~~~Ll~~~g~d------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         99 AVYTQNYELATWLCNQPGVN------MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHhCCHHHHHHHHhCCCCC------CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999984 787      7799999999999999999 99999999999764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.9e-23  Score=143.29  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             CchhhhcC---ChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcC-ChhhHHHh-hcccCccccCCCCCcHHHHHH--H
Q 040650            1 MHKALVEG---DGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG-DGGVITEI-ASSESLAKLTSNDETALILAV--K   73 (136)
Q Consensus         1 l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~-~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~--~   73 (136)
                      ||+|+..+   +.+++++|++.|++++  ..+..|.||||+|+..+ ..+++++| +.|++++.++..|.||||+|+  .
T Consensus        51 Lh~a~~~~~~~~~~iv~~Ll~~Gadin--~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~  128 (471)
T PHA03095         51 LHLYLHYSSEKVKDIVRLLLEAGADVN--APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGF  128 (471)
T ss_pred             HHHHHHhcCCChHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCC
Confidence            57888888   9999999999999998  88999999999999999 59999999 999999999999999999999  4


Q ss_pred             hCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC---HHHHHHHHHhccCccc
Q 040650           74 NSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK---LIVVKILMLRMLYPVS  130 (136)
Q Consensus        74 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~Ll~~g~~~~~  130 (136)
                      .++.+++++|+++|++      ++.+|..|.||||+|+..+   .+++++|+++|+.+..
T Consensus       129 ~~~~~iv~~Ll~~gad------~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~  182 (471)
T PHA03095        129 NINPKVIRLLLRKGAD------VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA  182 (471)
T ss_pred             cCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence            5678999999999998      6689999999999887754   7899999999876643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=7.1e-23  Score=147.68  Aligned_cols=80  Identities=24%  Similarity=0.181  Sum_probs=43.8

Q ss_pred             CChhhHHHh-hcccCccccCCCCCcHHHHHHH--hCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHh-------
Q 040650           43 GDGGVITEI-ASSESLAKLTSNDETALILAVK--NSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL-------  112 (136)
Q Consensus        43 ~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~-------  112 (136)
                      |+.+++++| ..|++++.+|..|+||||+|+.  .++.+++++|+++|++      ++.+|..|+||||+|+.       
T Consensus       295 g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD------IN~kD~~G~TPLH~A~~~lav~~~  368 (764)
T PHA02716        295 IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND------LNEPDNIGNTVLHTYLSMLSVVNI  368 (764)
T ss_pred             CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC------CccCCCCCCCHHHHHHHhhhhhcc
Confidence            444555555 5555555555555555555443  2345555555555555      44556666666665543       


Q ss_pred             -------cC-HHHHHHHHHhccCc
Q 040650          113 -------NK-LIVVKILMLRMLYP  128 (136)
Q Consensus       113 -------~~-~~~~~~Ll~~g~~~  128 (136)
                             .+ .+++++|+++|+++
T Consensus       369 ld~~~~~~~~~eVVklLL~~GADI  392 (764)
T PHA02716        369 LDPETDNDIRLDVIQCLISLGADI  392 (764)
T ss_pred             ccccccccChHHHHHHHHHCCCCC
Confidence                   23 55666666666544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=5.3e-23  Score=140.28  Aligned_cols=120  Identities=17%  Similarity=0.125  Sum_probs=87.6

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccc-----cCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhC
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVE-----DNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNS   75 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~-----~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~   75 (136)
                      |.|+..++.+++++|+++|++.. +..     +..+.+++|.+...+..+++++| ..|++++.+|..|.||||+|+..|
T Consensus       154 h~A~~~~~~eIVk~Lls~Ga~~~-n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g  232 (437)
T PHA02795        154 FRGICKKESSVVEFILNCGIPDE-NDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAG  232 (437)
T ss_pred             HHHHHcCcHHHHHHHHhcCCccc-ccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcC
Confidence            55556666666666666665322 111     12355666666677777777777 778888888888888888888888


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-H--------HHHHHHHHhccCc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-L--------IVVKILMLRMLYP  128 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~--------~~~~~Ll~~g~~~  128 (136)
                      +.+++++|+++|++      ++.+|..|+||||+|+..| .        +++++|+++|+..
T Consensus       233 ~~eiVelLL~~GAd------IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        233 YIDLVSWLLENGAN------VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCC
Confidence            88888888888888      6688888888888888776 3        7888888888744

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=1.8e-22  Score=140.16  Aligned_cols=80  Identities=15%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC--HHHHHHHH
Q 040650            8 GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ--IDAFKILM   84 (136)
Q Consensus         8 ~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~~~Ll   84 (136)
                      .+.+++++|++.|++++  ..|..|.||||+|+..|+.+++++| +.|++++.+|..|.||||+|+..+.  .+++++|+
T Consensus        50 ~~~~iv~~Ll~~Gadvn--~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         50 LDERFVEELLHRGYSPN--ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             CCHHHHHHHHHCcCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            34566666666666666  6666666666666666666666666 6666666666666666666655442  55666666


Q ss_pred             HHhhh
Q 040650           85 EETKR   89 (136)
Q Consensus        85 ~~~~~   89 (136)
                      ++|++
T Consensus       128 ~~Gad  132 (446)
T PHA02946        128 QYGAK  132 (446)
T ss_pred             HcCCC
Confidence            66655

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=2.6e-22  Score=139.36  Aligned_cols=121  Identities=17%  Similarity=0.147  Sum_probs=108.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcC--ChhhHHHh-hcccCccc-cCCCCCcHHHHHHHhCC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG--DGGVITEI-ASSESLAK-LTSNDETALILAVKNSQ   76 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~--~~~~~~~l-~~~~~~~~-~~~~~~t~l~~a~~~~~   76 (136)
                      ||+|++.|+.+++++|+++|++++  .+|..|.||||+|+..+  ..+++++| ..|++++. .|..|.|||| |+..+.
T Consensus        76 Lh~Aa~~g~~eiv~lLL~~GAdin--~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~  152 (446)
T PHA02946         76 LHIASKINNNRIVAMLLTHGADPN--ACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPS  152 (446)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCCC--CCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCC
Confidence            699999999999999999999998  89999999999998765  47889999 99999985 5889999997 667799


Q ss_pred             HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC---HHHHHHHHHhccCccc
Q 040650           77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK---LIVVKILMLRMLYPVS  130 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~Ll~~g~~~~~  130 (136)
                      .+++++|++.|++      ++.+|..|+||||+|+..+   .+++++|+++|+++..
T Consensus       153 ~~vv~~Ll~~gad------~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        153 ERVFKKIMSIGFE------ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             hHHHHHHHhcccc------ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence            9999999999998      7799999999999987654   6899999999987654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=141.43  Aligned_cols=121  Identities=15%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcC---ChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC---HHHH
Q 040650            8 GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG---DGGVITEI-ASSESLAKLTSNDETALILAVKNSQ---IDAF   80 (136)
Q Consensus         8 ~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~---~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~   80 (136)
                      +..+++++|+++|++++  ..|..|.||||+|+..+   +.+++++| +.|++++.+|..|.||||+|+..++   .+++
T Consensus        87 ~~~~iv~~Ll~~GadiN--~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv  164 (489)
T PHA02798         87 HMLDIVKILIENGADIN--KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII  164 (489)
T ss_pred             hHHHHHHHHHHCCCCCC--CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHH
Confidence            45667777777777666  66667777777776654   45666666 6677777777777777777776665   6666


Q ss_pred             HHHHHHhhhcch--------------------------------------------------------------------
Q 040650           81 KILMEETKRHNL--------------------------------------------------------------------   92 (136)
Q Consensus        81 ~~Ll~~~~~~~~--------------------------------------------------------------------   92 (136)
                      ++|+++|++++.                                                                    
T Consensus       165 ~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~  244 (489)
T PHA02798        165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDF  244 (489)
T ss_pred             HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHH
Confidence            666666654320                                                                    


Q ss_pred             ---hhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           93 ---EHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        93 ---~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                         ...++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus       245 l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~  286 (489)
T PHA02798        245 IFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI  286 (489)
T ss_pred             HHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence               0124456778899999999988 9999999999987653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=2e-22  Score=145.41  Aligned_cols=121  Identities=21%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             Cchhh--hcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC--hhhHHHh-hcccCccccCCCCCcHHHHHH---
Q 040650            1 MHKAL--VEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD--GGVITEI-ASSESLAKLTSNDETALILAV---   72 (136)
Q Consensus         1 l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~--~~~~~~l-~~~~~~~~~~~~~~t~l~~a~---   72 (136)
                      ||.|+  ..++.+++++|+++|++++  ..|..|.||||+|+..|+  .+++++| +.|++++.+|..|.||||.|+   
T Consensus       181 LH~A~~n~~~~~eIVklLLe~GADVN--~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a  258 (764)
T PHA02716        181 LHAYLGNMYVDIDILEWLCNNGVNVN--LQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINI  258 (764)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhh
Confidence            45554  3467899999999999998  889999999999999985  4899999 999999999999999999753   


Q ss_pred             ----------------------------------HhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHh--cC-H
Q 040650           73 ----------------------------------KNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL--NK-L  115 (136)
Q Consensus        73 ----------------------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~--~~-~  115 (136)
                                                        ..|+.+++++|++.|++      ++.+|..|+||||+|+.  .+ .
T Consensus       259 ~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd------IN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        259 DNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK------LHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             hccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc------eeccCCCCCCHHHHHHHHhCCCc
Confidence                                              34678888999999988      77999999999998764  45 8


Q ss_pred             HHHHHHHHhccCcc
Q 040650          116 IVVKILMLRMLYPV  129 (136)
Q Consensus       116 ~~~~~Ll~~g~~~~  129 (136)
                      +++++|+++|+++.
T Consensus       333 eIVklLLe~GADIN  346 (764)
T PHA02716        333 DIIKLLHEYGNDLN  346 (764)
T ss_pred             hHHHHHHHcCCCCc
Confidence            99999999998653

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.88  E-value=2.7e-22  Score=110.99  Aligned_cols=83  Identities=25%  Similarity=0.365  Sum_probs=54.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+||+.|+.+++++|++.+.+++  .    |.+|+|+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~--~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN--L----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT--S----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC--C----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            466777777777777777665554  2    66677777777777777766 6666666666666677777777777777


Q ss_pred             HHHHHHHhhh
Q 040650           80 FKILMEETKR   89 (136)
Q Consensus        80 ~~~Ll~~~~~   89 (136)
                      +++|+++|++
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            7777666666

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=2.5e-22  Score=119.77  Aligned_cols=117  Identities=25%  Similarity=0.178  Sum_probs=107.4

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      .+|+..+.+..|+.|++..++.. +.+|.+|.||||.|+.+|+..|++.| .+|++++.+...|+||||.||.-.+.+++
T Consensus        68 lwaae~nrl~eV~~lL~e~an~v-NtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   68 LWAAEKNRLTEVQRLLSEKANHV-NTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHHhhccHHHHHHHHHhccccc-cccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            47889999999999999877654 69999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC--HHHHHHHHHhc
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK--LIVVKILMLRM  125 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~Ll~~g  125 (136)
                      .+|+++|++      +++.....+||||+|+...  ...+++|+...
T Consensus       147 ~~LLqhgaD------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dr  187 (228)
T KOG0512|consen  147 GRLLQHGAD------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDR  187 (228)
T ss_pred             HHHHhccCc------ccccccccchhhHHhhcccchHHHHHHHhhcc
Confidence            999999999      8899999999999999877  77777776544

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=9.3e-22  Score=142.94  Aligned_cols=121  Identities=22%  Similarity=0.241  Sum_probs=75.8

Q ss_pred             chhhhc-CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC-HH
Q 040650            2 HKALVE-GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ-ID   78 (136)
Q Consensus         2 ~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~-~~   78 (136)
                      |+|+.. ++.++++.|++.|++++  ..|..|.||||+|+..|+.+++++| ..|++++..+..|.||||+|+..+. ..
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadin--~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~  423 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANVN--ARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYM  423 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCCc--cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHH
Confidence            344432 34455555555555555  5555555555555555555555555 5555555555555555555554443 33


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC--HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK--LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..+  .+++++|++.|+++..
T Consensus       424 ~vk~Ll~~gad------in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        424 SVKTLIDRGAN------VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             HHHHHHhCCCC------CCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCC
Confidence            45555555555      6789999999999999866  7999999999987653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=8.2e-22  Score=138.67  Aligned_cols=121  Identities=16%  Similarity=0.107  Sum_probs=84.4

Q ss_pred             CChhhhhHhhccCCCC-CcccccCCCCcHHHHHHHc--CChhhHHHh-hcccCccc-cCCCCCcHHHHHHHhC----CHH
Q 040650            8 GDGEVVHFLGKLDLES-RPVVEDNGLMTPLHRAAVD--GDGGVITEI-ASSESLAK-LTSNDETALILAVKNS----QID   78 (136)
Q Consensus         8 ~~~~~~~~ll~~~~~~-~~~~~~~~g~~~l~~a~~~--~~~~~~~~l-~~~~~~~~-~~~~~~t~l~~a~~~~----~~~   78 (136)
                      ++.+++++|+++|+++ +  ..+..|.||||+|+..  ++.+++++| +.|++++. .+..|.||||.|+..+    +.+
T Consensus       122 ~~~eiv~~Ll~~Gadin~--~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~  199 (494)
T PHA02989        122 NNCDMLRFLLSKGINVND--VKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIK  199 (494)
T ss_pred             CcHHHHHHHHHCCCCccc--ccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHH
Confidence            5677777777777777 5  6677777777776543  466777777 77777766 4566777777766543    667


Q ss_pred             HHHHHHHHhhhcch--------------------------------hhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           79 AFKILMEETKRHNL--------------------------------EHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~--------------------------------~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      ++++|++.|++.+.                                ...++.+|..|+||||+|+..| .+++++|+++|
T Consensus       200 iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G  279 (494)
T PHA02989        200 VIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG  279 (494)
T ss_pred             HHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC
Confidence            77777777765430                                0123566777888888888888 88888888888


Q ss_pred             cCccc
Q 040650          126 LYPVS  130 (136)
Q Consensus       126 ~~~~~  130 (136)
                      +++..
T Consensus       280 adin~  284 (494)
T PHA02989        280 DDIYN  284 (494)
T ss_pred             CCccc
Confidence            76643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.88  E-value=7.2e-22  Score=134.80  Aligned_cols=120  Identities=13%  Similarity=0.062  Sum_probs=105.6

Q ss_pred             Cchhhh--cCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCcccc------CCCCCcHHHHH
Q 040650            1 MHKALV--EGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKL------TSNDETALILA   71 (136)
Q Consensus         1 l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~------~~~~~t~l~~a   71 (136)
                      ||+++.  .|+.+++++|+++|++++  .  ..+.||+|.|+..++.+++++| ..|+.....      +..+.+++|.|
T Consensus       120 L~~~~~n~~n~~eiV~~LI~~GADIn--~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a  195 (437)
T PHA02795        120 LLYYLSNAYVEIDIVDFMVDHGAVIY--K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLV  195 (437)
T ss_pred             HHHHHHhcCCCHHHHHHHHHCCCCCC--C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHH
Confidence            578888  899999999999999998  5  3457999999999999999999 888743222      13478999999


Q ss_pred             HHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           72 VKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        72 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ...+..+++++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|++...
T Consensus       196 ~~~~~~eIve~LIs~GAD------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        196 DEPTVLEIYKLCIPYIED------INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA  249 (437)
T ss_pred             HhcCHHHHHHHHHhCcCC------cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999999999999      7899999999999999999 9999999999987653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=4.7e-22  Score=140.91  Aligned_cols=124  Identities=27%  Similarity=0.319  Sum_probs=111.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCc-------------ccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCc
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRP-------------VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDET   66 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~-------------~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t   66 (136)
                      ||.|+..|+.++++.+++.+.....             +..|.+|.||||+|+..|.+++++.| ..|++++.++.++.|
T Consensus       229 LhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s  308 (929)
T KOG0510|consen  229 LHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEES  308 (929)
T ss_pred             hhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCC
Confidence            6899999999999999998765441             24578899999999999999999999 999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           67 ALILAVKNSQIDAFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        67 ~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      |||.|+.+|+..+++-|++ .+..     +++..|..|.||||.|+..| ..+++.|++.|+...
T Consensus       309 pLH~AA~yg~~ntv~rLL~~~~~r-----llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  309 PLHFAAIYGRINTVERLLQESDTR-----LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             chHHHHHcccHHHHHHHHhCcCcc-----ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            9999999999999999998 4433     47889999999999999999 999999999998765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=9.8e-22  Score=141.46  Aligned_cols=119  Identities=16%  Similarity=0.085  Sum_probs=103.3

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHH--HcCChhhHHHh-hcccCccccCC---CC-----------
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAA--VDGDGGVITEI-ASSESLAKLTS---ND-----------   64 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~--~~~~~~~~~~l-~~~~~~~~~~~---~~-----------   64 (136)
                      |+|+..++.+++++|+++|++++  ..|..|.||||.++  ..|+.+++++| +.|++++.+|.   .|           
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gadin--~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~  185 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFDLS--VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNC  185 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCCCC--ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccc
Confidence            56888899999999999999999  99999999999654  57899999999 99999976543   23           


Q ss_pred             CcHHHHHHH-----------hCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-H--HHHHHHHHhccCcc
Q 040650           65 ETALILAVK-----------NSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-L--IVVKILMLRMLYPV  129 (136)
Q Consensus        65 ~t~l~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~--~~~~~Ll~~g~~~~  129 (136)
                      .||||+|+.           .++.+++++|+++|++      ++.+|..|.||||+|+..| .  +++++|++ |++..
T Consensus       186 ~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        186 GTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence            599999986           4579999999999999      7799999999999999998 4  79999985 76544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=137.33  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=105.8

Q ss_pred             hhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHc-----CChhhHHHh-hcccCccccCCCCCcHHHHHHHhC---
Q 040650            5 LVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVD-----GDGGVITEI-ASSESLAKLTSNDETALILAVKNS---   75 (136)
Q Consensus         5 ~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~-----~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~---   75 (136)
                      ...++.+++++|+++|++++  ..+..|.||||.++..     +..+++++| +.|++++.+|..|.||||+|+..+   
T Consensus        46 ~~~~~~~iv~~Ll~~Gadvn--~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~  123 (489)
T PHA02798         46 RDSPSTDIVKLFINLGANVN--GLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYIN  123 (489)
T ss_pred             CCCCCHHHHHHHHHCCCCCC--CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcC
Confidence            34568999999999999998  8999999999998764     668999999 999999999999999999999876   


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC----HHHHHHHHHhccCcc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK----LIVVKILMLRMLYPV  129 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~----~~~~~~Ll~~g~~~~  129 (136)
                      +.+++++|+++|++      ++.+|..|.||||+|+..+    .+++++|+++|+++.
T Consensus       124 ~~~iv~~Ll~~Gad------vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798        124 NLEILLFMIENGAD------TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             hHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence            68999999999999      7799999999999999865    699999999998754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.86  E-value=3.3e-21  Score=140.05  Aligned_cols=121  Identities=19%  Similarity=0.110  Sum_probs=83.6

Q ss_pred             CchhhhcCCh-hhhhHhhccCCCCCcccccCCCCcHHHHHHHcC-ChhhHHHh-hcccCccccCCCCCcHHHHHHHhC-C
Q 040650            1 MHKALVEGDG-EVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDG-DGGVITEI-ASSESLAKLTSNDETALILAVKNS-Q   76 (136)
Q Consensus         1 l~~a~~~~~~-~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~-~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~-~   76 (136)
                      ||+|+..++. +++++|++.|++++  ..|..|.||||+|+..| ..++++.| ..|++++..|..|.||||+|+..+ .
T Consensus       277 Lh~Aa~~~~~~~iv~lLl~~gadin--~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~  354 (682)
T PHA02876        277 LHHASQAPSLSRLVPKLLERGADVN--AKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRN  354 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCc
Confidence            4667766665 46677777777666  66777777777777766 46666666 666666666666777777766643 4


Q ss_pred             HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .+++++|++.|++      ++.+|..|.||||+|+..| .+++++|+++|+.+.
T Consensus       355 ~~iv~lLl~~gad------in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        355 KDIVITLLELGAN------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE  402 (682)
T ss_pred             HHHHHHHHHcCCC------CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            6666666666666      5577777777777777777 777777777776654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=6.5e-21  Score=105.45  Aligned_cols=84  Identities=31%  Similarity=0.414  Sum_probs=76.5

Q ss_pred             HHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           36 LHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        36 l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                      ||+|+..|+.+++++| +.+.+++.    |.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~   70 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGAD------INSQDKNGNTALHYAAENG   70 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC------TT-BSTTSSBHHHHHHHTT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc------ccccCCCCCCHHHHHHHcC
Confidence            7999999999999999 87777765    88999999999999999999999998      7799999999999999999


Q ss_pred             -HHHHHHHHHhccCcc
Q 040650          115 -LIVVKILMLRMLYPV  129 (136)
Q Consensus       115 -~~~~~~Ll~~g~~~~  129 (136)
                       .+++++|+++|+++.
T Consensus        71 ~~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   71 NLEIVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHHHHTTT-TT
T ss_pred             CHHHHHHHHHcCCCCC
Confidence             999999999997664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.85  E-value=3.5e-21  Score=142.23  Aligned_cols=118  Identities=23%  Similarity=0.217  Sum_probs=60.4

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      |.|...+....++.++++|...+  ..+..|.||||.|+.+|+..++++| +.|++++.++..|+||||.|+..|+.+|+
T Consensus       512 hla~~~~~v~~~~~l~~~ga~v~--~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~  589 (1143)
T KOG4177|consen  512 HLAADEDTVKVAKILLEHGANVD--LRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIA  589 (1143)
T ss_pred             hhhhhhhhHHHHHHHhhcCCcee--hhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHH
Confidence            33444444444444444444444  4444555555555555555555555 55555555555555555555555555555


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      .+|+++|++      +|..|..|.|||++|+..| .++++.|+..++.
T Consensus       590 ~LLlk~GA~------vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  590 ELLLKHGAS------VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHcCCC------CCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            555555555      3455555555555555555 5555555555544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.85  E-value=9.1e-21  Score=133.43  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=96.9

Q ss_pred             Cchhhh--cCChhhhhHhhccCCCCCccc-ccCCCCcHHHHHHHcC----ChhhHHHh-hcccCc---------------
Q 040650            1 MHKALV--EGDGEVVHFLGKLDLESRPVV-EDNGLMTPLHRAAVDG----DGGVITEI-ASSESL---------------   57 (136)
Q Consensus         1 l~~a~~--~~~~~~~~~ll~~~~~~~~~~-~~~~g~~~l~~a~~~~----~~~~~~~l-~~~~~~---------------   57 (136)
                      ||+|+.  .++.+++++|++.|++++  . .+..|.||+|+++..+    +.+++++| ..|+++               
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~  226 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLF--EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFL  226 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCcc--ccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHH
Confidence            466654  357788888888888877  4 5677888888876543    67777777 665544               


Q ss_pred             -----------------------cccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           58 -----------------------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        58 -----------------------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                                             +.+|..|.||||+|+..++.+++++|++.|++      ++.+|..|+||||+|+..|
T Consensus       227 ~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad------in~~d~~G~TpL~~A~~~~  300 (494)
T PHA02989        227 DNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD------IYNVSKDGDTVLTYAIKHG  300 (494)
T ss_pred             HhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC------ccccCCCCCCHHHHHHHcC
Confidence                                   44566799999999999999999999999999      7799999999999999999


Q ss_pred             -HHHHHHHHHhccC
Q 040650          115 -LIVVKILMLRMLY  127 (136)
Q Consensus       115 -~~~~~~Ll~~g~~  127 (136)
                       .++++.|+++++.
T Consensus       301 ~~~iv~~LL~~~p~  314 (494)
T PHA02989        301 NIDMLNRILQLKPG  314 (494)
T ss_pred             CHHHHHHHHhcCCC
Confidence             9999999998753

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.4e-21  Score=120.61  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=91.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |.||+..|++.+|++|++.|++++  ...+...++|.+|+..|..+++++| ..+.++|..|.+|.|||.+|++-++.+|
T Consensus       164 LiWAaa~G~i~vV~fLL~~GAdp~--~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkc  241 (296)
T KOG0502|consen  164 LIWAAAKGHIPVVQFLLNSGADPD--ALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKC  241 (296)
T ss_pred             hHHHHhcCchHHHHHHHHcCCChh--hhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHH
Confidence            467888888888888888888877  7777777888888888888888888 7788888888888888888888888888


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcCHHHHHHHHHh
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLR  124 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~Ll~~  124 (136)
                      ++.|+..|++      ++..+..|.+++..|+..|+.+++..++.
T Consensus       242 ve~Ll~sGAd------~t~e~dsGy~~mdlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  242 VESLLNSGAD------VTQEDDSGYWIMDLAVALGYRIVQQVIEK  280 (296)
T ss_pred             HHHHHhcCCC------cccccccCCcHHHHHHHhhhHHHHHHHHH
Confidence            8888888887      66778888888888888884466655544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=5.9e-21  Score=141.03  Aligned_cols=122  Identities=27%  Similarity=0.278  Sum_probs=115.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|+..|+.++++.+++.++..+  .....+.+++|.+...+...+++.+ ..+++++.++.++.||||.|+.+|+.++
T Consensus       478 Lhlaaq~Gh~~~~~llle~~~~~~--~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~  555 (1143)
T KOG4177|consen  478 LHLAAQEGHTEVVQLLLEGGANDN--LDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDL  555 (1143)
T ss_pred             hhhhhccCCchHHHHhhhcCCccC--ccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchH
Confidence            689999999999999999887776  7778899999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      |++|+++|++      ++.+++.|+||||.|+..| .+|+++|+++|+++..
T Consensus       556 VkfLLe~gAd------v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna  601 (1143)
T KOG4177|consen  556 VKFLLEHGAD------VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNA  601 (1143)
T ss_pred             HHHhhhCCcc------ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCc
Confidence            9999999999      7799999999999999999 9999999999998764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=2e-20  Score=122.74  Aligned_cols=121  Identities=24%  Similarity=0.305  Sum_probs=98.0

Q ss_pred             CchhhhcCChhhhhHhhccC-CCCCcccccCCCCcHHHHHHHc-----CChhhHHHh-hcccCcccc-CCCCCcHHHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLD-LESRPVVEDNGLMTPLHRAAVD-----GDGGVITEI-ASSESLAKL-TSNDETALILAV   72 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~g~~~l~~a~~~-----~~~~~~~~l-~~~~~~~~~-~~~~~t~l~~a~   72 (136)
                      |||++..+++++|+.||+.| ++++  ..+.-|.||+++++..     .+.+++..| .. .++|.+ ...|.|+|++|+
T Consensus       272 LHYsVSHaNF~VV~~LLDSgvC~VD--~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~gQTALMLAV  348 (452)
T KOG0514|consen  272 LHYAVSHANFDVVSILLDSGVCDVD--QQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQHGQTALMLAV  348 (452)
T ss_pred             eeeeecccchHHHHHHhccCccccc--ccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhhcchhhhhhh
Confidence            79999999999999999976 5666  8888899999887653     334555555 44 355555 356889999999


Q ss_pred             HhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           73 KNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      .+|+.++++.|+.+|++      +|.+|.+|.|+|+.|+++| .+++++||....++.+
T Consensus       349 SHGr~d~vk~LLacgAd------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s  401 (452)
T KOG0514|consen  349 SHGRVDMVKALLACGAD------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS  401 (452)
T ss_pred             hcCcHHHHHHHHHccCC------CccccCCccHHHhhhhhhChHHHHHHHhccCcccce
Confidence            99999999999999998      7799999999999999999 9999999887766554

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=1.2e-19  Score=111.46  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=85.1

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHHh-hc------ccCccccCCCCCcHHHHHHHhCC----HHHHHHHHHHhhhcchhhh
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITEI-AS------SESLAKLTSNDETALILAVKNSQ----IDAFKILMEETKRHNLEHL   95 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~l-~~------~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~   95 (136)
                      ..+..|.||||+|+..|+.++++.| ..      +++++.+|..|.||||+|+..++    .+++++|+++|++      
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad------   89 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD------   89 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC------
Confidence            5678899999999999999999987 32      47788999999999999999998    5889999999998      


Q ss_pred             hccccc-CCChHHHHHHhcC-HHHHHHHHHh-ccCc
Q 040650           96 FSATDK-EGNSILHLAALNK-LIVVKILMLR-MLYP  128 (136)
Q Consensus        96 ~~~~~~-~~~t~l~~a~~~~-~~~~~~Ll~~-g~~~  128 (136)
                      ++.++. .|+||||+|+..+ .+++++|++. |+++
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~  125 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL  125 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence            778885 8999999999999 9999999984 7654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=7.1e-20  Score=130.44  Aligned_cols=114  Identities=16%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             ChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC----hhhHHHh-hccc--CccccCCCCCcHHHH---HHHhC---
Q 040650            9 DGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD----GGVITEI-ASSE--SLAKLTSNDETALIL---AVKNS---   75 (136)
Q Consensus         9 ~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~l-~~~~--~~~~~~~~~~t~l~~---a~~~~---   75 (136)
                      +.+++++|+++|++++  .. ..|.||||+|+..+.    .+++++| ..|+  +++.+|..|.||||.   +...+   
T Consensus       358 ~ieIvelLIs~GAdIN--~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        358 SIPILRCMLDNGATMD--KT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             cHHHHHHHHHCCCCCC--cC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            4666666676666666  43 566677766666553    5666666 5554  466666666666663   22111   


Q ss_pred             ------CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccch
Q 040650           76 ------QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSY  131 (136)
Q Consensus        76 ------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~  131 (136)
                            ..+++++|+++|++      ++.+|..|+||||+|+..+ .+++++|+++|+++...
T Consensus       435 ~~~e~~~~~ivk~LIs~GAD------INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~  491 (672)
T PHA02730        435 HCYETILIDVFDILSKYMDD------IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTT  491 (672)
T ss_pred             cccchhHHHHHHHHHhcccc------hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCC
Confidence                  12446666666666      5566666666666666666 66666666666655443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.83  E-value=1e-19  Score=129.67  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=104.0

Q ss_pred             CchhhhcCC----hhhhhHhhccCCCCCcccccCCCCcHHHH---HHHcC---------ChhhHHHh-hcccCccccCCC
Q 040650            1 MHKALVEGD----GEVVHFLGKLDLESRPVVEDNGLMTPLHR---AAVDG---------DGGVITEI-ASSESLAKLTSN   63 (136)
Q Consensus         1 l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~g~~~l~~---a~~~~---------~~~~~~~l-~~~~~~~~~~~~   63 (136)
                      ||+|+..++    .+++++|+++|++.+++..|..|.||||.   +...+         ..+++++| ..|++++.+|..
T Consensus       382 LH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~  461 (672)
T PHA02730        382 LHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE  461 (672)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC
Confidence            588888875    89999999999843223888999999985   33222         23468999 999999999999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhccccc-CCChHHHHHHhc--C-HHHHHHHHHhccCcc
Q 040650           64 DETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDK-EGNSILHLAALN--K-LIVVKILMLRMLYPV  129 (136)
Q Consensus        64 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~~t~l~~a~~~--~-~~~~~~Ll~~g~~~~  129 (136)
                      |.||||+|+..++.+++++|+++|++      ++.+|. .|.||+|.|+..  + .+++++|+++|+...
T Consensus       462 G~TPLh~Aa~~~~~eive~LI~~GAd------IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        462 NKTLLYYAVDVNNIQFARRLLEYGAS------VNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999      779996 699999999874  6 999999999998653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.8e-20  Score=119.30  Aligned_cols=121  Identities=21%  Similarity=0.247  Sum_probs=94.2

Q ss_pred             hhcCChhhhhHhhc-cCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHH
Q 040650            5 LVEGDGEVVHFLGK-LDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKI   82 (136)
Q Consensus         5 ~~~~~~~~~~~ll~-~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   82 (136)
                      |+.|+.-.|+.-++ ..-+.+  .-|..|.+|||+|+..|+..+++.| ..|+.+|..+....||||+|+.+|+.++++.
T Consensus         8 cregna~qvrlwld~tehdln--~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLN--VGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCcccccc--cccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHH
Confidence            45555555555444 333444  7788888888888888888888888 8888888887777888888888888888888


Q ss_pred             HHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccchhc
Q 040650           83 LMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSYQR  133 (136)
Q Consensus        83 Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~~~  133 (136)
                      |+++.++      +|+.|+.|.|||||||.-| ..+++-|++.|+...-.++
T Consensus        86 ll~~kad------vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk  131 (448)
T KOG0195|consen   86 LLSRKAD------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNK  131 (448)
T ss_pred             HHHHhcc------cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeeccc
Confidence            8888887      7788888888888888888 7788888888876544443

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=2.6e-19  Score=104.18  Aligned_cols=114  Identities=34%  Similarity=0.467  Sum_probs=103.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|++.++.+++++|++.+...+  ..+..|.+|+|+|+..+..+++++| ..+..++..+..+.||+|.|+..++.++
T Consensus        11 l~~a~~~~~~~~i~~li~~~~~~~--~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~   88 (126)
T cd00204          11 LHLAASNGHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV   88 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHH
Confidence            578999999999999999998876  7888999999999999999999999 8888888888889999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHH
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM  122 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll  122 (136)
                      +++|+..+..      .+..+..+.||++.|...+ .+++++|+
T Consensus        89 ~~~L~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          89 VKLLLKHGAD------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCCC------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999998866      6688899999999999999 99998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.82  E-value=9.5e-20  Score=128.77  Aligned_cols=119  Identities=12%  Similarity=0.256  Sum_probs=103.5

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCC--CcHHHHHHHcCChh---hHHHh-hcccCccccCCCCCcHHHHHHHhC
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGL--MTPLHRAAVDGDGG---VITEI-ASSESLAKLTSNDETALILAVKNS   75 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g--~~~l~~a~~~~~~~---~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~   75 (136)
                      +.|+..++.+++++|+++|++++  ..|..|  .||||+|+.....+   +++++ ..|++++.+|..|.||||+|+..+
T Consensus       344 ~~Aa~~gn~eIVelLIs~GADIN--~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~  421 (631)
T PHA02792        344 FQKFDNRDPKVVEYILKNGNVVV--EDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH  421 (631)
T ss_pred             HHHHHcCCHHHHHHHHHcCCchh--hhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence            56788999999999999999998  777664  69999987766544   57777 899999999999999999999999


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHh----------cC-HHHHHHHHHhccCc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL----------NK-LIVVKILMLRMLYP  128 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~----------~~-~~~~~~Ll~~g~~~  128 (136)
                      +.+++++|+++|++      ++.+|..|.|||++|+.          .. .++++.|+++|..+
T Consensus       422 n~eivelLLs~GAD------IN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        422 SVSLVEWLIDNGAD------INITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             CHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            99999999999999      77999999999999975          22 56799999999765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=5.7e-20  Score=117.93  Aligned_cols=120  Identities=20%  Similarity=0.175  Sum_probs=106.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+||+.|+..+++.|++.|+.++  ..+....||||+|+..|+.++++.| ...+++|..+..|+|||||||.-|...+
T Consensus        38 lhwaakegh~aivemll~rgarvn--~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqi  115 (448)
T KOG0195|consen   38 LHWAAKEGHVAIVEMLLSRGARVN--STNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQI  115 (448)
T ss_pred             hhhhhhcccHHHHHHHHhcccccc--cccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHH
Confidence            699999999999999999999998  7788888999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      .+-|++.|+.      ++..|..|.||+..|--.- ..+.++--++|..+
T Consensus       116 aedli~~ga~------v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~  159 (448)
T KOG0195|consen  116 AEDLISCGAA------VNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSP  159 (448)
T ss_pred             HHHHHhccce------eeecccCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence            9999999999      7799999999999875443 34444444555443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=2.2e-19  Score=129.41  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             Cchhhhc---CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChh----hHHHh-hcccCccccCCCCCcHHHHHH
Q 040650            1 MHKALVE---GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGG----VITEI-ASSESLAKLTSNDETALILAV   72 (136)
Q Consensus         1 l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~----~~~~l-~~~~~~~~~~~~~~t~l~~a~   72 (136)
                      ||+|+..   |+.+++++|++.|++++  ..+..|.||||+|+..|+.+    +++.| +.+...+..+  ..++++.|+
T Consensus        36 Lh~a~~~~~~~~~~~v~~Ll~~ga~v~--~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~  111 (661)
T PHA02917         36 LHAYLFNEHCNNVEVVKLLLDSGTNPL--HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSYMKS  111 (661)
T ss_pred             HHHHHHhhhcCcHHHHHHHHHCCCCcc--ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHHHHh
Confidence            5776554   88999999999999988  88999999999999998854    44566 5433344333  236677788


Q ss_pred             HhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHH--hcC-HHHHHHHHHhccCcc
Q 040650           73 KNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA--LNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~--~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ..++.+++++|+++|++      ++.+|..|+||||.++  ..| .+++++|+++|+++.
T Consensus       112 ~~~~~e~vk~Ll~~Gad------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917        112 KNVDVDLIKVLVEHGFD------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             hcCCHHHHHHHHHcCCC------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            88999999999999999      7799999999999653  567 999999999998764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.80  E-value=6.5e-20  Score=113.32  Aligned_cols=117  Identities=22%  Similarity=0.176  Sum_probs=101.8

Q ss_pred             hhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHH
Q 040650            4 ALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKI   82 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   82 (136)
                      ++-+.+++.+-.+.+  ..++  ..|..|.|||.+|+..|+++++++| ..|++++.......++|.+|+..|..+++++
T Consensus       136 sVhql~L~~~~~~~~--n~VN--~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVN--NKVN--ACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhh--cccc--CccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHH
Confidence            333444444444333  3455  8899999999999999999999999 9999999988888999999999999999999


Q ss_pred             HHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           83 LMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        83 Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      |+.++.+      +|..|.+|.|||-+|++.+ .+|++.|+..|+++-.
T Consensus       212 LL~r~vd------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  212 LLTREVD------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             HHhcCCC------cceeccCCCceeeeeecCChHHHHHHHHhcCCCccc
Confidence            9999998      8899999999999999999 9999999999988653

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.79  E-value=1.1e-19  Score=128.19  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=112.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|+..|+.++++.|++..+.++  .++..|.+|||+|++.|+.++++.+ ..+..++..+..|.||||.|+++|+.++
T Consensus        53 lhha~Lng~~~is~llle~ea~ld--l~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dv  130 (854)
T KOG0507|consen   53 LHHAVLNGQNQISKLLLDYEALLD--LCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEV  130 (854)
T ss_pred             HHHHHhcCchHHHHHHhcchhhhh--hhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHH
Confidence            689999999999999999999888  8899999999999999999999999 7778889999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +.+|+.+|+++.      .+|..+.|++..|++.| .++++.|++. ..++.
T Consensus       131 v~~Ll~~~adp~------i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~  175 (854)
T KOG0507|consen  131 VFYLLKKNADPF------IRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQ  175 (854)
T ss_pred             HHHHHhcCCCcc------ccCcccccHHHHHHHhhhhHHHHHHhhh-ccchh
Confidence            999999999944      89999999999999999 9999999988 44443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.3e-18  Score=106.50  Aligned_cols=96  Identities=17%  Similarity=0.096  Sum_probs=85.8

Q ss_pred             CchhhhcCChhh---hhHhhccCCCCCccccc-CCCCcHHHHHHHcCChhhHHHh-h-cccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEV---VHFLGKLDLESRPVVED-NGLMTPLHRAAVDGDGGVITEI-A-SSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~---~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~l-~-~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      ||+|+..|+.+.   +++|++.|++++  ..+ ..|.||||+|+..++.+++++| . .+++++.++..|.||||+|+..
T Consensus        61 Lh~Aa~~g~~~~~~~i~~Ll~~Gadin--~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~  138 (166)
T PHA02743         61 THMVAWYDRANAVMKIELLVNMGADIN--ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM  138 (166)
T ss_pred             HHHHHHhCccCHHHHHHHHHHcCCCCC--CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc
Confidence            689999988765   799999999998  777 5899999999999999999999 5 7999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhhcchhhhhcccccCCC
Q 040650           75 SQIDAFKILMEETKRHNLEHLFSATDKEGN  104 (136)
Q Consensus        75 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  104 (136)
                      ++.+++++|+.+|++      ++.++..|.
T Consensus       139 ~~~~iv~~Ll~~ga~------~~~~~~~~~  162 (166)
T PHA02743        139 RDRRMMEILRANGAV------CDDPLSIGL  162 (166)
T ss_pred             CCHHHHHHHHHcCCC------CCCcccCCc
Confidence            999999999999998      556665553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.77  E-value=8.7e-19  Score=128.54  Aligned_cols=123  Identities=17%  Similarity=0.195  Sum_probs=103.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccccc--------------CCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVED--------------NGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDE   65 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~   65 (136)
                      ||+|+..|+.++++.|+++|++++  ..+              ..|.+|||.|+..|+.+++++| +.|++++.+|..|+
T Consensus       132 LhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~  209 (743)
T TIGR00870       132 LHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGN  209 (743)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhh
Confidence            689999999999999999999887  332              3589999999999999999999 99999999999999


Q ss_pred             cHHHHHHHhC---------CHHHHHHHHHHhhhcc-hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           66 TALILAVKNS---------QIDAFKILMEETKRHN-LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        66 t~l~~a~~~~---------~~~~~~~Ll~~~~~~~-~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      ||||+|+..+         ...+.+++++.+.... ...+.+..|.+|.||||+|+..| .+++++|++.+
T Consensus       210 T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       210 TLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            9999999986         2446677777665522 11223567999999999999999 99999999954

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=4.9e-18  Score=111.89  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=85.6

Q ss_pred             cccCCCCc-HHHHHHHcCChhhHHHh-hcccCccccC----CCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhccc-
Q 040650           27 VEDNGLMT-PLHRAAVDGDGGVITEI-ASSESLAKLT----SNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSAT-   99 (136)
Q Consensus        27 ~~~~~g~~-~l~~a~~~~~~~~~~~l-~~~~~~~~~~----~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-   99 (136)
                      ..|..|.+ +||.|+..|+.+++++| +.|++++.++    ..|.||||+|+..++.+++++|+++|++      ++.+ 
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD------VN~~~  100 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD------VNRYA  100 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------cCccc
Confidence            45666665 56667788999999999 9999999874    5899999999999999999999999999      6676 


Q ss_pred             ccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650          100 DKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       100 ~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +..|.||||+|+..+ .+++++|+++|+++..
T Consensus       101 ~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~  132 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCLEILLSYGADINI  132 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            467999999999999 9999999999987653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=8.5e-19  Score=119.63  Aligned_cols=58  Identities=22%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           64 DETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        64 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      |.|.||.|+..|..++.++|+.+|.+      ++.+|.+||||||.|+.-| .+++++|+++|+.
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYS------VNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD  256 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccC------cccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence            44555555555555555555555444      4466666666666666666 6666666666654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.76  E-value=1.9e-18  Score=93.09  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=85.3

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      .|+++.|..+-||..+..|.+++  . ...|++|||||+-+|..+++++| ..|++++.+|..|.|||..|+..|+.+|+
T Consensus         7 ~W~vkNG~~DeVk~~v~~g~nVn--~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    7 AWNVKNGEIDEVKQSVNEGLNVN--E-IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hhhhccCcHHHHHHHHHccccHH--H-HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            57889999999999999887776  3 34889999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHH
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILH  108 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~  108 (136)
                      ++|++.|++      -..+..+|.+.+.
T Consensus        84 klLL~~GAd------rt~~~PdG~~~~e  105 (117)
T KOG4214|consen   84 KLLLQNGAD------RTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHcCcc------cceeCCCchhHHh
Confidence            999999998      3355666666543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.76  E-value=3.2e-18  Score=126.64  Aligned_cols=106  Identities=19%  Similarity=0.199  Sum_probs=91.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC-------------------------------hhhHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD-------------------------------GGVIT   49 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~-------------------------------~~~~~   49 (136)
                      ||+|+..|+.+++++|+++|++++  ..|..|.||||+|+..|+                               .++++
T Consensus       562 Lh~Aa~~g~~~~v~~Ll~~gadin--~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~  639 (823)
T PLN03192        562 LHIAASKGYEDCVLVLLKHACNVH--IRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMK  639 (823)
T ss_pred             HHHHHHcChHHHHHHHHhcCCCCC--CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHH
Confidence            699999999999999999999998  889999999886655555                               45566


Q ss_pred             Hh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCC-ChHHHHHHhcC
Q 040650           50 EI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEG-NSILHLAALNK  114 (136)
Q Consensus        50 ~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-~t~l~~a~~~~  114 (136)
                      .| +.|++++.+|..|.||||+|+..|+.+++++|+++|++      ++..|..| .||..++....
T Consensus       640 ~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd------v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        640 ELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD------VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC------CCCCCCCCCCCHHHHHHHHH
Confidence            66 77889999999999999999999999999999999999      66888888 99988765443

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=3.4e-18  Score=121.03  Aligned_cols=114  Identities=14%  Similarity=0.048  Sum_probs=100.4

Q ss_pred             hhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHH-cCChhhHHHh-hcccCc-----------------------
Q 040650            3 KALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAV-DGDGGVITEI-ASSESL-----------------------   57 (136)
Q Consensus         3 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~-~~~~~~~~~l-~~~~~~-----------------------   57 (136)
                      .|...|+.|++++|+++|++++  .++..+.+|+|+|+. .++.+++++| ..|+++                       
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN--~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~  155 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEIN--SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW  155 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcc--cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch
Confidence            4667899999999999999999  888888999999966 7999999999 777652                       


Q ss_pred             -------------cccCCCCCcHHHHHHHhC-------CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC---
Q 040650           58 -------------AKLTSNDETALILAVKNS-------QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK---  114 (136)
Q Consensus        58 -------------~~~~~~~~t~l~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---  114 (136)
                                   +..|..|.||||+|+..+       ..++++.|+++|++      ++.+|..|.||||+|+.+.   
T Consensus       156 ~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~------~~~~d~~g~t~l~~~~~~~~i~  229 (631)
T PHA02792        156 DDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE------MRYYTYREHTTLYYYVDKCDIK  229 (631)
T ss_pred             hhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC------cCccCCCCChHHHHHHHcccch
Confidence                         234567999999999999       89999999999999      7789999999999999877   


Q ss_pred             HHHHHHHHHh
Q 040650          115 LIVVKILMLR  124 (136)
Q Consensus       115 ~~~~~~Ll~~  124 (136)
                      .+++++|++.
T Consensus       230 ~ei~~~L~~~  239 (631)
T PHA02792        230 REIFDALFDS  239 (631)
T ss_pred             HHHHHHHHhc
Confidence            8899999874

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=1.2e-17  Score=101.15  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=80.0

Q ss_pred             CchhhhcCCh---hhhhHhhccCCCCCccccc-CCCCcHHHHHHHcCChhhHHHh-h-cccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDG---EVVHFLGKLDLESRPVVED-NGLMTPLHRAAVDGDGGVITEI-A-SSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~l-~-~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      ||+|+..++.   +++++|++.|++++  ..+ ..|.||||+|+..++.+++++| . .+++++.++..|.||||+|+..
T Consensus        59 Lh~a~~~~~~~~~e~v~~Ll~~gadin--~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~  136 (154)
T PHA02736         59 VHIVSNPDKADPQEKLKLLMEWGADIN--GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER  136 (154)
T ss_pred             EEeecccCchhHHHHHHHHHHcCCCcc--ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc
Confidence            6899999987   46889999999998  777 5899999999999999999999 6 5899999999999999999999


Q ss_pred             CCHHHHHHHHHHhhh
Q 040650           75 SQIDAFKILMEETKR   89 (136)
Q Consensus        75 ~~~~~~~~Ll~~~~~   89 (136)
                      ++.+++++|+..|++
T Consensus       137 ~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        137 HDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999887

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=9.6e-18  Score=119.31  Aligned_cols=125  Identities=21%  Similarity=0.198  Sum_probs=111.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccc---------c--------------CCCCcHHHHHHHcCChhhHHHh-hcccC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVE---------D--------------NGLMTPLHRAAVDGDGGVITEI-ASSES   56 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~---------~--------------~~g~~~l~~a~~~~~~~~~~~l-~~~~~   56 (136)
                      ||.|+...+.++|+.|++.|++++  ++         |              ..|..||..|+..++.+++++| +++++
T Consensus       188 LHiAIv~~~~~~V~lLl~~gADV~--aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd  265 (782)
T KOG3676|consen  188 LHIAIVNRDAELVRLLLAAGADVH--ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD  265 (782)
T ss_pred             HHHHHHhccHHHHHHHHHcCCchh--hHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC
Confidence            799999999999999999998876  22         1              1478899999999999999999 99999


Q ss_pred             ccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh-ccCccch
Q 040650           57 LAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR-MLYPVSY  131 (136)
Q Consensus        57 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~-g~~~~~~  131 (136)
                      ++.+|..|+|.||..+.+...++.++++++|++..    ...+|..|.|||.+|++.| .+|.+.+++. +.....|
T Consensus       266 ~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l----~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~Y  338 (782)
T KOG3676|consen  266 PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANAL----EHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAY  338 (782)
T ss_pred             CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcc----ccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceee
Confidence            99999999999999999999999999999998833    6689999999999999999 9999999999 4444433

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.74  E-value=2.6e-17  Score=104.63  Aligned_cols=116  Identities=26%  Similarity=0.299  Sum_probs=106.6

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC-----hhhHHHh-hccc---CccccCCCCCcHHHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD-----GGVITEI-ASSE---SLAKLTSNDETALILAV   72 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~-----~~~~~~l-~~~~---~~~~~~~~~~t~l~~a~   72 (136)
                      |.++..+..+.+++++..+.+++  ..+..|.||+|+|+..++     .++++.| ..++   ..+.+|..|.||||+|+
T Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~  155 (235)
T COG0666          78 HSAASKGDDKIVKLLLASGADVN--AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA  155 (235)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcc--cccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHH
Confidence            56778899999999999999998  999999999999999999     9999999 8888   66666999999999999


Q ss_pred             HhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           73 KNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      ..|+.++++.|++.|++      ++.++..|.|+++.|+..+ .+++..++..+
T Consensus       156 ~~~~~~~~~~ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         156 LNGDADIVELLLEAGAD------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HcCchHHHHHHHhcCCC------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999998      6688999999999999999 99999999865

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=2.4e-17  Score=112.64  Aligned_cols=126  Identities=19%  Similarity=0.164  Sum_probs=113.8

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      .-||..+..+-+..|+..|..++  ..+.+|.|++|-+|.-.+.+|+++| +.++.++..|..++||+|.|+..|+..++
T Consensus        45 l~A~~~~d~~ev~~ll~~ga~~~--~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   45 LEACSRGDLEEVRKLLNRGASPN--LCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HhccccccHHHHHHHhccCCCcc--ccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            35789999999999999998888  9999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHhhhcc-----------------------------------------------------hhhhhcccccCCChHH
Q 040650           81 KILMEETKRHN-----------------------------------------------------LEHLFSATDKEGNSIL  107 (136)
Q Consensus        81 ~~Ll~~~~~~~-----------------------------------------------------~~~~~~~~~~~~~t~l  107 (136)
                      .+|+.+|++..                                                     ...+....+..|.|.+
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL  202 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence            99999998743                                                     2244556666799999


Q ss_pred             HHHHhcC-HHHHHHHHHhccCcc
Q 040650          108 HLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       108 ~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      |+|+.+| .++.++|++.|..+.
T Consensus       203 HvAaa~Gy~e~~~lLl~ag~~~~  225 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQAGYSVN  225 (527)
T ss_pred             HHHHhhhHHHHHHHHHHhccCcc
Confidence            9999999 999999999997654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.72  E-value=4.5e-17  Score=119.65  Aligned_cols=120  Identities=21%  Similarity=0.055  Sum_probs=87.1

Q ss_pred             CchhhhcCChhhhhHhhcc--CCCCCcccccCCCCcHHH-HHHHcCChhhHHHh-hcccC--------------------
Q 040650            1 MHKALVEGDGEVVHFLGKL--DLESRPVVEDNGLMTPLH-RAAVDGDGGVITEI-ASSES--------------------   56 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~g~~~l~-~a~~~~~~~~~~~l-~~~~~--------------------   56 (136)
                      |+.|++.|+.+.++.+++.  +.+++  ..|..|.|||| .|+.+++.+++++| ..+..                    
T Consensus        21 ~l~A~~~g~~~~v~~lL~~~~~~~in--~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~   98 (743)
T TIGR00870        21 FLPAAERGDLASVYRDLEEPKKLNIN--CPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVE   98 (743)
T ss_pred             HHHHHHcCCHHHHHHHhccccccCCC--CcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHH
Confidence            3578899999999999988  55555  77888999999 77888888888887 55420                    


Q ss_pred             ------------------ccc----cCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccc--------------
Q 040650           57 ------------------LAK----LTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATD--------------  100 (136)
Q Consensus        57 ------------------~~~----~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--------------  100 (136)
                                        .+.    ....|.||||+|+..++.+++++|+++|+++      +.++              
T Consensus        99 ~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv------~~~~~~~~~~~~~~~~~~  172 (743)
T TIGR00870        99 AILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASV------PARACGDFFVKSQGVDSF  172 (743)
T ss_pred             HHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCC------CcCcCCchhhcCCCCCcc
Confidence                              000    0124778888888888888888888888773      3321              


Q ss_pred             cCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650          101 KEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus       101 ~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      ..|+||||.|+..| .+++++|+++|+++
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSEDPADI  201 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence            35778888888888 88888888887654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.71  E-value=3.1e-16  Score=91.08  Aligned_cols=96  Identities=35%  Similarity=0.447  Sum_probs=87.6

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCCh
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNS  105 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t  105 (136)
                      ..+..|.||||+|+..++.+++++| ..+...+..+..|.+|+|.|+..+..+++++|+..++.      ++..+..+.|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------~~~~~~~~~~   75 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD------VNARDKDGNT   75 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCC
Confidence            3567899999999999999999999 88888788889999999999999999999999999976      6688899999


Q ss_pred             HHHHHHhcC-HHHHHHHHHhccCc
Q 040650          106 ILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus       106 ~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      |+|+|+..+ .+++++|+++|...
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~   99 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADV   99 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCC
Confidence            999999999 99999999988443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.71  E-value=4.2e-17  Score=118.16  Aligned_cols=101  Identities=19%  Similarity=0.171  Sum_probs=75.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+.|+..|+.+.++.|++.|++++  ..|..|.||||+|+..|+.+++++| ..|++++.+|..|.||||+|+..++.++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin--~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPN--CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            356777788888888888887777  7777888888888888888888888 7788888888888888888888888888


Q ss_pred             HHHHHHH-------hhhcchhhhhcccccCCChHHHH
Q 040650           80 FKILMEE-------TKRHNLEHLFSATDKEGNSILHL  109 (136)
Q Consensus        80 ~~~Ll~~-------~~~~~~~~~~~~~~~~~~t~l~~  109 (136)
                      +++|+.+       |++      .+..+..|.+|+..
T Consensus       164 v~~Ll~~~~~~~~~ga~------~~~~~~~g~~~~~~  194 (664)
T PTZ00322        164 VQLLSRHSQCHFELGAN------AKPDSFTGKPPSLE  194 (664)
T ss_pred             HHHHHhCCCcccccCCC------CCccccCCCCccch
Confidence            8888777       554      44555555555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.71  E-value=1.3e-17  Score=117.98  Aligned_cols=123  Identities=25%  Similarity=0.249  Sum_probs=109.1

Q ss_pred             chhhhcCChhhhhHhhccCC-----C------CCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDL-----E------SRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALI   69 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~-----~------~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~   69 (136)
                      .-|++.|+.+.+..+++...     .      .+.+..|..|.|+||.|+.+|+.++.++| +..+-++..|..|.+|||
T Consensus         8 ~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plh   87 (854)
T KOG0507|consen    8 IDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLH   87 (854)
T ss_pred             HHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEE
Confidence            35899999999999997421     1      11235677899999999999999999999 888889999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           70 LAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        70 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +|+..|+.+++++++.++..      .+..+..|.||||.|+.+| .+++++|+++|++|.-
T Consensus        88 laaw~g~~e~vkmll~q~d~------~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i  143 (854)
T KOG0507|consen   88 LAAWNGNLEIVKMLLLQTDI------LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFI  143 (854)
T ss_pred             ehhhcCcchHHHHHHhcccC------CCcccccCcCccchhhhhcchHHHHHHHhcCCCccc
Confidence            99999999999999999866      7899999999999999999 9999999999999874

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=6.1e-17  Score=106.62  Aligned_cols=111  Identities=22%  Similarity=0.253  Sum_probs=97.3

Q ss_pred             CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHH
Q 040650            8 GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEE   86 (136)
Q Consensus         8 ~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~   86 (136)
                      .+.++|..|.+.| ++| ......|+|+|++|+..|...+++.| .+++++|++|..|.|+|+.|+.+|+.+++++|+..
T Consensus       318 ~d~~vV~~LF~mg-nVN-aKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  318 ADRTVVERLFKMG-DVN-AKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhHHHHHHHHhcc-Ccc-hhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            4567888888876 455 35567899999999999999999999 99999999999999999999999999999999987


Q ss_pred             hhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           87 TKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                       +..+    +...|.+|.|+|.+|...| .++.-.|..+.
T Consensus       396 -p~cd----~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  396 -PSCD----ISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             -Cccc----ceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence             2233    7899999999999999999 99988887665

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.70  E-value=9.1e-17  Score=80.63  Aligned_cols=53  Identities=32%  Similarity=0.517  Sum_probs=39.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHH
Q 040650           64 DETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM  122 (136)
Q Consensus        64 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll  122 (136)
                      |.||||+|+..|+.+++++|+++|.+      ++.+|..|+||+|+|+..| .+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56888888888888888888888777      6677888888888888888 88888875

...

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=1.7e-16  Score=95.00  Aligned_cols=106  Identities=20%  Similarity=0.188  Sum_probs=94.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH-
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID-   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~-   78 (136)
                      ||-|+..|+.++++.|+..|++++  .+...||||||-||...+.+++..| .+|++++.......||||+|+...+.. 
T Consensus       101 LHRAaYn~h~div~~ll~~gAn~~--a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~  178 (228)
T KOG0512|consen  101 LHRAAYNGHLDIVHELLLSGANKE--AKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRD  178 (228)
T ss_pred             HHHHHhcCchHHHHHHHHccCCcc--cccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHH
Confidence            688999999999999999999999  9999999999999999999999999 999999999988999999999987654 


Q ss_pred             HHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           79 AFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        79 ~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                      .+.+|+. .+..      ....+..+.||+.+|.+.+
T Consensus       179 t~~~Ll~dryi~------pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  179 TLELLLHDRYIH------PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHhhccccC------hhhhcCccchHHHHHHHhh
Confidence            5666653 4555      4478889999999999886

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=1.2e-16  Score=109.57  Aligned_cols=115  Identities=17%  Similarity=0.111  Sum_probs=99.0

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      .-|+..|-+++|+..+.+-.++.  ..+..|.|+||-|+..|+.+|++|| .+|+++|..|.+|+||||.|+..++..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpS--qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPS--QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCC--CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            45788899999999998877777  8889999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHh--cC-HHHHHHHHH
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAAL--NK-LIVVKILML  123 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~--~~-~~~~~~Ll~  123 (136)
                      +.|++.|+.+     +-..-.++.|+...+-.  -| ..|.+||..
T Consensus       633 kqLVe~Gaav-----fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  633 KQLVESGAAV-----FASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHhccceE-----EeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999998872     34455678899887744  46 789888854

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=2.6e-16  Score=84.90  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=76.8

Q ss_pred             HHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhc
Q 040650           35 PLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN  113 (136)
Q Consensus        35 ~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  113 (136)
                      .+.+++.+|..+-++.. ..+-+++.. ..|++|||+|+.+|+.+++++|+.-|++      ++.+|..|-|||-.|+.-
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~------i~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGAN------IQDKDKYGITPLLSAVWE   77 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccc------cCCccccCCcHHHHHHHH
Confidence            35678888988888877 666666543 3789999999999999999999999999      779999999999999999


Q ss_pred             C-HHHHHHHHHhccCcc
Q 040650          114 K-LIVVKILMLRMLYPV  129 (136)
Q Consensus       114 ~-~~~~~~Ll~~g~~~~  129 (136)
                      | .+||++|++.|++--
T Consensus        78 GH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   78 GHRDCVKLLLQNGADRT   94 (117)
T ss_pred             hhHHHHHHHHHcCcccc
Confidence            9 999999999998643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.65  E-value=1.4e-15  Score=110.37  Aligned_cols=84  Identities=24%  Similarity=0.257  Sum_probs=80.6

Q ss_pred             HHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhc
Q 040650           35 PLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN  113 (136)
Q Consensus        35 ~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  113 (136)
                      .|+.|+..|+.+.++.| ..+++++.+|..|.||||+|+..|+.+++++|+++|++      ++.+|..|.||||+|+..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad------vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD------PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHC
Confidence            47889999999999999 99999999999999999999999999999999999998      779999999999999999


Q ss_pred             C-HHHHHHHHHh
Q 040650          114 K-LIVVKILMLR  124 (136)
Q Consensus       114 ~-~~~~~~Ll~~  124 (136)
                      | .+++++|+++
T Consensus       159 g~~~iv~~Ll~~  170 (664)
T PTZ00322        159 GFREVVQLLSRH  170 (664)
T ss_pred             CcHHHHHHHHhC
Confidence            9 9999999999

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.65  E-value=7.9e-16  Score=77.19  Aligned_cols=53  Identities=30%  Similarity=0.403  Sum_probs=44.3

Q ss_pred             CCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHH
Q 040650           32 LMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILM   84 (136)
Q Consensus        32 g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll   84 (136)
                      |.||+|+|+..|+.+++++| +.+.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999 889999999999999999999999999999985

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.63  E-value=3.8e-16  Score=78.80  Aligned_cols=50  Identities=22%  Similarity=0.348  Sum_probs=26.3

Q ss_pred             cCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHH
Q 040650           55 ESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA  110 (136)
Q Consensus        55 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a  110 (136)
                      .+++.+|..|.||||+|+..|+.+++++|+..|++      ++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d------~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD------PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--------TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC------CCCCcCCCCCHHHhC
Confidence            66777777777888888888888888877777777      667777888887775

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=9.6e-16  Score=77.35  Aligned_cols=54  Identities=24%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             hhccC-CCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHH
Q 040650           16 LGKLD-LESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILA   71 (136)
Q Consensus        16 ll~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a   71 (136)
                      |++++ .+++  ..|..|.||||+|+.+|+.+++++| ..+++++.+|..|.||+|+|
T Consensus         1 LL~~~~~~~n--~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVN--AQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCc--CcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 5555  8999999999999999999999999 99999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=2.7e-15  Score=103.14  Aligned_cols=88  Identities=24%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             HHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           36 LHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        36 l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                      |.-|+..|-.++++-. ..-.++...+..|.|+||-|+..|+.++++||++.|++      +|..|.+||||||+|+..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan------VNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN------VNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc------ccCccCCCCchhhhhhhcC
Confidence            3457888999999988 77788888899999999999999999999999999999      8899999999999999999


Q ss_pred             -HHHHHHHHHhccCcc
Q 040650          115 -LIVVKILMLRMLYPV  129 (136)
Q Consensus       115 -~~~~~~Ll~~g~~~~  129 (136)
                       .-+++.|++.|+..+
T Consensus       628 nv~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVF  643 (752)
T ss_pred             chHHHHHHHhccceEE
Confidence             999999999998765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=1.2e-13  Score=87.65  Aligned_cols=99  Identities=32%  Similarity=0.414  Sum_probs=89.6

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC-----HHHHHHHHHHhh--hcchhhhhcc
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ-----IDAFKILMEETK--RHNLEHLFSA   98 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~--~~~~~~~~~~   98 (136)
                      ..+..+.++++.++..+..++++++ ..+.+++.++..|.||||+|+..++     .++++.|++.|+  .     ..+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~-----~~~~  142 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD-----VNNL  142 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC-----Cccc
Confidence            4456688999999999999999888 9999999999999999999999999     999999999999  3     1567


Q ss_pred             cccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           99 TDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        99 ~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +|..|.||+|+|+..| .+++++|++.|+.+..
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~  175 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNS  175 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcc
Confidence            7999999999999999 9999999999987654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.52  E-value=7.7e-14  Score=89.84  Aligned_cols=114  Identities=18%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             hhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCcccc-CCCCCcHHHHHHHhCCHHHH
Q 040650            3 KALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKL-TSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         3 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~   80 (136)
                      .++-+|+.+-..-|++.-..++  ..|..|.++|..|+..|+.+++++| +.|+++|.. +..+.||||.|+.+|+.++.
T Consensus        18 e~i~Kndt~~a~~LLs~vr~vn--~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvc   95 (396)
T KOG1710|consen   18 EAIDKNDTEAALALLSTVRQVN--QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVC   95 (396)
T ss_pred             HHHccCcHHHHHHHHHHhhhhh--ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHH
Confidence            4566788888888888655566  8999999999999999999999999 999999874 57789999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR  124 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~  124 (136)
                      .+|++.|+.+      ...|.-|+|+-..|+.-| .++|.++-++
T Consensus        96 rllldaGa~~------~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   96 RLLLDAGARM------YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHhccCcc------ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999994      488999999999999999 9999887544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.50  E-value=1.7e-14  Score=106.52  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=111.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCcccc-CCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKL-TSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~-~~~~~t~l~~a~~~~~~~   78 (136)
                      |-.||..|+.|.++.|+.+|+.+.  -+|+.|.+|+.+|+..|+..+++.| ...++++.+ |+.+.|+|.+||.-|+.+
T Consensus       761 LT~acaggh~e~vellv~rganie--hrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~  838 (2131)
T KOG4369|consen  761 LTSACAGGHREEVELLVVRGANIE--HRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTR  838 (2131)
T ss_pred             ccccccCccHHHHHHHHHhccccc--ccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcch
Confidence            457899999999999999999999  9999999999999999999999999 888888775 578999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++++|+..|++.+      .++-...|||.+|..-| .++++.|+..|+...
T Consensus       839 vvelLl~~ganke------hrnvsDytPlsla~Sggy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  839 VVELLLNAGANKE------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             HHHHHHHhhcccc------ccchhhcCchhhhcCcchHHHHHHHhhcccccc
Confidence            9999999999955      88999999999999999 999999999996543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.47  E-value=2e-13  Score=97.75  Aligned_cols=116  Identities=18%  Similarity=0.204  Sum_probs=97.5

Q ss_pred             hcCChhhhhHhhccCCCCCc---ccccCCCCcHHHHHHHcCChhhHHHh-hcccCcccc---------CC----------
Q 040650            6 VEGDGEVVHFLGKLDLESRP---VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKL---------TS----------   62 (136)
Q Consensus         6 ~~~~~~~~~~ll~~~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~---------~~----------   62 (136)
                      ..++.++++.|++--+...-   ......|+||||.|+.+.+.+++.+| +.|++++.+         |.          
T Consensus       155 ~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~  234 (782)
T KOG3676|consen  155 SDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYT  234 (782)
T ss_pred             chhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCc
Confidence            35666888888875443220   02245799999999999999999999 999988755         11          


Q ss_pred             ----CCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           63 ----NDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        63 ----~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                          .|..||..|+..++.+++++|+++|++      ++++|.+|+|.||..+.+- .+|-..++++|+.
T Consensus       235 G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  235 GYFYFGEYPLSFAACTNQPEIVRLLLAHGAD------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             ceeeeccCchHHHHHcCCHHHHHHHHhcCCC------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence                367899999999999999999999999      7799999999999999988 9999999999998

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.30  E-value=2.4e-12  Score=95.59  Aligned_cols=124  Identities=21%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC--CCCCcHHHHHHHhCCHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT--SNDETALILAVKNSQID   78 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~--~~~~t~l~~a~~~~~~~   78 (136)
                      -+||..|+.+.++.||..|+...  .++-...||+..|...|..++++.| ..|..++.+.  ..|.+||++|...|+..
T Consensus       829 Slacsggr~~vvelLl~~ganke--hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKE--HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhcccc--ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence            45777777777777777777666  6666667777777777777777777 7776666654  45677777777777777


Q ss_pred             HHHHHHHHhhhcc----------------------------hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           79 AFKILMEETKRHN----------------------------LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        79 ~~~~Ll~~~~~~~----------------------------~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      ..+.|++.|.+++                            .+..+..+-..|.|||.-++..| .++-++|+..|++
T Consensus       907 at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  907 ATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             HHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            7777777766644                            22335566677888888888888 8888888888865

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.23  E-value=6.6e-11  Score=76.56  Aligned_cols=95  Identities=16%  Similarity=0.119  Sum_probs=83.1

Q ss_pred             CcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHH
Q 040650           33 MTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA  111 (136)
Q Consensus        33 ~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~  111 (136)
                      .++|..+...+..+-...| +..-+++.+|..|.++|..|+..|+.++++.|++.|++.+     ..++..+.||||.|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN-----~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN-----DKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC-----cccccccccHHHHHH
Confidence            4688888888888888877 6666789999999999999999999999999999999933     235778999999999


Q ss_pred             hcC-HHHHHHHHHhccCccchh
Q 040650          112 LNK-LIVVKILMLRMLYPVSYQ  132 (136)
Q Consensus       112 ~~~-~~~~~~Ll~~g~~~~~~~  132 (136)
                      ..| .++.++|++.|+.+...|
T Consensus        88 LSGn~dvcrllldaGa~~~~vN  109 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVN  109 (396)
T ss_pred             HcCCchHHHHHHhccCcccccc
Confidence            999 999999999999876654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.20  E-value=1.9e-11  Score=83.49  Aligned_cols=87  Identities=24%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             CCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHH-hhhcchhhhhcccccCCChHHHH
Q 040650           32 LMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEE-TKRHNLEHLFSATDKEGNSILHL  109 (136)
Q Consensus        32 g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~t~l~~  109 (136)
                      +...+.+|+..|+...++-+ -.+.++..+|.+.+|+||.|+..|+.+++++|++. +.+      .+.+|.-|+|||.-
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~------~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD------PDPKDRWGRTPLDD  579 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCC------CChhhccCCCcchH
Confidence            34445555555555555555 55555555555555555555555555555555543 233      33555555555555


Q ss_pred             HHhcC-HHHHHHHHHh
Q 040650          110 AALNK-LIVVKILMLR  124 (136)
Q Consensus       110 a~~~~-~~~~~~Ll~~  124 (136)
                      |...+ .+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            55555 5555555443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.17  E-value=9.9e-11  Score=81.97  Aligned_cols=118  Identities=20%  Similarity=0.154  Sum_probs=98.0

Q ss_pred             hhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hccc--CccccCCCCCcHHHHHHHhCCHHHH
Q 040650            4 ALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSE--SLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~--~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      |+..+++--++..-..|.++.  ..+.+..+.||+|+..|+.++++++ .++.  .+++.|..|.|.||-|+..++..+.
T Consensus       873 av~~~D~~klqE~h~~gg~ll--~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc  950 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLNGGSLL--IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVC  950 (1004)
T ss_pred             HHHhccHHHHHHHHhcCCceE--eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHH
Confidence            445555544555555677766  7788888999999999999999999 5553  5677888999999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++|++.|++      +...|..|.||-..|-..| .+.+.+|-++..+.+
T Consensus       951 ~~lvdagas------l~ktd~kg~tp~eraqqa~d~dlaayle~rq~yk~  994 (1004)
T KOG0782|consen  951 QLLVDAGAS------LRKTDSKGKTPQERAQQAGDPDLAAYLESRQNYKV  994 (1004)
T ss_pred             HHHHhcchh------heecccCCCChHHHHHhcCCchHHHHHhhhhchhh
Confidence            999999999      7789999999999999999 999999987765433

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.17  E-value=1.6e-10  Score=79.47  Aligned_cols=86  Identities=17%  Similarity=0.117  Sum_probs=75.5

Q ss_pred             cHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHH
Q 040650           34 TPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA  111 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~  111 (136)
                      .-||.++..|+.+..--| ..|++.|..+ ..|.||||.|+..|+...+++|+-+|++      +...|.+|.||+.+|.
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD------~~a~d~~GmtP~~~AR  208 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD------PGAQDSSGMTPVDYAR  208 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC------CCCCCCCCCcHHHHHH
Confidence            357889999998876555 8899999887 5699999999999999999999999999      6699999999999999


Q ss_pred             hcC-HHHHHHHHHhc
Q 040650          112 LNK-LIVVKILMLRM  125 (136)
Q Consensus       112 ~~~-~~~~~~Ll~~g  125 (136)
                      ..| .++.+.|++-.
T Consensus       209 ~~gH~~laeRl~e~~  223 (669)
T KOG0818|consen  209 QGGHHELAERLVEIQ  223 (669)
T ss_pred             hcCchHHHHHHHHHH
Confidence            999 88888887644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.11  E-value=2.9e-10  Score=78.62  Aligned_cols=86  Identities=26%  Similarity=0.344  Sum_probs=69.5

Q ss_pred             cHHHHHHHcCChhhHHH-h--hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHH
Q 040650           34 TPLHRAAVDGDGGVITE-I--ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA  110 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~-l--~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a  110 (136)
                      .|+|+++.....+-+.. +  .....++..|..|+||||+|+..|+...++.|+..|++      +..+|..||+|||-|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad------v~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD------VSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC------ccccccccccHHHHH
Confidence            45888887666554443 3  55567888888999999999999999999999999998      779999999999999


Q ss_pred             HhcC-HHHHHHHHHhc
Q 040650          111 ALNK-LIVVKILMLRM  125 (136)
Q Consensus       111 ~~~~-~~~~~~Ll~~g  125 (136)
                      +..| .+++..++.+-
T Consensus        96 v~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHcCCHHHHHHHHHHh
Confidence            9999 77666666553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.10  E-value=4.2e-11  Score=86.80  Aligned_cols=81  Identities=22%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             ccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCC
Q 040650           26 VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEG  103 (136)
Q Consensus        26 ~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  103 (136)
                      +..|..|++++|+++..+..++++|| .+|.++..+| ..|.||||-|..+|+.+|+-.|+.+|.+      +..+|+.|
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S------L~i~Dkeg  119 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS------LRIKDKEG  119 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc------eEEecccC
Confidence            48899999999999999999999999 8899999999 6799999999999999999999999998      77999999


Q ss_pred             ChHHHHHHh
Q 040650          104 NSILHLAAL  112 (136)
Q Consensus       104 ~t~l~~a~~  112 (136)
                      ..||..-++
T Consensus       120 lsplq~~~r  128 (1267)
T KOG0783|consen  120 LSPLQFLSR  128 (1267)
T ss_pred             CCHHHHHhh
Confidence            999987766

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.08  E-value=5.7e-10  Score=76.85  Aligned_cols=84  Identities=20%  Similarity=0.116  Sum_probs=75.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccccc-CCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVED-NGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||-.++.+++++.-.|+..|++.+  ..+ ..|.||||.|+..|..--+++| -+|+++..+|..|.||+.+|-..|+.+
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N--~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQAN--FFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccC--CCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            577889999999999999999998  444 4689999999999999999999 999999999999999999999999988


Q ss_pred             HHHHHHHH
Q 040650           79 AFKILMEE   86 (136)
Q Consensus        79 ~~~~Ll~~   86 (136)
                      +.+-|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            77766654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.06  E-value=2.8e-10  Score=49.72  Aligned_cols=27  Identities=41%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             CCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650          102 EGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus       102 ~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +|+||||+|+..| .+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4677777777777 77777777777543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.03  E-value=1.1e-09  Score=76.65  Aligned_cols=86  Identities=19%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             HHHHHcCChhhHHHh-hccc--Ccc--ccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHH
Q 040650           37 HRAAVDGDGGVITEI-ASSE--SLA--KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA  111 (136)
Q Consensus        37 ~~a~~~~~~~~~~~l-~~~~--~~~--~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~  111 (136)
                      .-|+...+...+-+| .+|.  .++  .-+..|+|+||+|+..|+..+.++|+.+|++      +..+|..|.|+|.||.
T Consensus       629 l~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d------v~~rda~g~t~l~yar  702 (749)
T KOG0705|consen  629 LRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD------VMARDAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc------ceecccCCchhhhhHh
Confidence            334555555555555 4443  222  2245689999999999999999999999999      7799999999999999


Q ss_pred             hcC-HHHHHHHHHhccCc
Q 040650          112 LNK-LIVVKILMLRMLYP  128 (136)
Q Consensus       112 ~~~-~~~~~~Ll~~g~~~  128 (136)
                      ..| .+|+.+|+++|..+
T Consensus       703 ~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hcccHHHHHHHHHcCCCc
Confidence            999 99999999999543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.98  E-value=1e-09  Score=49.10  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=14.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHhhh
Q 040650           64 DETALILAVKNSQIDAFKILMEETKR   89 (136)
Q Consensus        64 ~~t~l~~a~~~~~~~~~~~Ll~~~~~   89 (136)
                      |.||||+|+..++.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            45555555555555555555555555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.96  E-value=1.1e-09  Score=47.85  Aligned_cols=27  Identities=37%  Similarity=0.475  Sum_probs=22.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHhhh
Q 040650           63 NDETALILAVKNSQIDAFKILMEETKR   89 (136)
Q Consensus        63 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~   89 (136)
                      .|+||||+|+..|+.+++++|+++|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            377888888888888888888888776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.95  E-value=1.4e-09  Score=74.65  Aligned_cols=86  Identities=21%  Similarity=0.137  Sum_probs=80.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh--hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l--~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      +++|++.|++..++.+.-.|.+..  ..|.+.+|+||.|+.-|+.+++++|  ..+.+++.+|+.|+|||.-|.+.++.+
T Consensus       510 ~~~aa~~GD~~alrRf~l~g~D~~--~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  510 VMYAAKNGDLSALRRFALQGMDLE--TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhcCCHHHHHHHHHhccccc--ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            478999999999999998999998  9999999999999999999999999  788999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q 040650           79 AFKILMEETK   88 (136)
Q Consensus        79 ~~~~Ll~~~~   88 (136)
                      ++++|-+...
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999987643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.94  E-value=1.7e-09  Score=75.77  Aligned_cols=88  Identities=16%  Similarity=0.110  Sum_probs=74.0

Q ss_pred             hhhcCChhhhhHhhccCCCCCc--ccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            4 ALVEGDGEVVHFLGKLDLESRP--VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      |....++..+-.|+.+|....+  ..-+.+|.|+||+||..|+..+.++| .+++++..+|..|+|+|.||-+.|..+|+
T Consensus       631 A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~  710 (749)
T KOG0705|consen  631 AVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECI  710 (749)
T ss_pred             HHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHH
Confidence            4555667777788888765441  12345678999999999999999999 99999999999999999999999999999


Q ss_pred             HHHHHHhhhcc
Q 040650           81 KILMEETKRHN   91 (136)
Q Consensus        81 ~~Ll~~~~~~~   91 (136)
                      ..|+.+|...+
T Consensus       711 d~llq~gcp~e  721 (749)
T KOG0705|consen  711 DVLLQYGCPDE  721 (749)
T ss_pred             HHHHHcCCCcc
Confidence            99999987643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.94  E-value=1.7e-09  Score=48.33  Aligned_cols=29  Identities=31%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             CCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650          102 EGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       102 ~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +|.||||+|+..| .+++++|+++|+++..
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            5899999999999 9999999999988754

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=1.7e-09  Score=76.01  Aligned_cols=86  Identities=24%  Similarity=0.241  Sum_probs=79.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|++.|+-++|++++++++.-.++..|..|.|+||-|+..++..+.++| ..|+.+...|..|.||---|-+.|+.+.
T Consensus       903 lh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  903 LHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDL  982 (1004)
T ss_pred             HHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchH
Confidence            699999999999999999998755568889999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHH
Q 040650           80 FKILMEE   86 (136)
Q Consensus        80 ~~~Ll~~   86 (136)
                      ..+|-++
T Consensus       983 aayle~r  989 (1004)
T KOG0782|consen  983 AAYLESR  989 (1004)
T ss_pred             HHHHhhh
Confidence            9998654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.88  E-value=1.1e-08  Score=71.03  Aligned_cols=86  Identities=16%  Similarity=0.083  Sum_probs=68.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      +|++....+.+-+...+.......++..|..|.||||.|+..|+.+.+..| ..++++..+|..|++|||.|+..|+..+
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~  103 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQI  103 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHH
Confidence            466666666655555443222222238899999999999999999999999 9999999999999999999999999887


Q ss_pred             HHHHHHH
Q 040650           80 FKILMEE   86 (136)
Q Consensus        80 ~~~Ll~~   86 (136)
                      +.-++.+
T Consensus       104 i~~vlr~  110 (560)
T KOG0522|consen  104 ITEVLRH  110 (560)
T ss_pred             HHHHHHH
Confidence            7666544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.75  E-value=9.4e-09  Score=76.15  Aligned_cols=120  Identities=14%  Similarity=-0.085  Sum_probs=88.2

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCChhhHHHh--hcccCccccCCCCCcHHHHHHHhCCH
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQI   77 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l--~~~~~~~~~~~~~~t~l~~a~~~~~~   77 (136)
                      +|+++..+..-.++.+++- +....  ..|.+|.-.+|+++. ++.+++-++  ..+..++++|..|+||||+|+.+|+.
T Consensus       578 lhL~a~~lyawLie~~~e~~~~~~~--eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e  654 (975)
T KOG0520|consen  578 LHLLAELLYAWLIEKVIEWAGSGDL--ELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGRE  654 (975)
T ss_pred             HHHHHHHhHHHHHHHHhcccccCch--hhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchHhhcCHH
Confidence            4677777777788888875 44444  677888888888444 444665555  78888999999999999999999999


Q ss_pred             HHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHH
Q 040650           78 DAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILML  123 (136)
Q Consensus        78 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~  123 (136)
                      .++..|++-|++...-...+.....|.|+-.+|..+| ..+.-+|-+
T Consensus       655 ~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  655 KLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            9999998877764311223344556889999998888 667666643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.73  E-value=1.6e-08  Score=73.91  Aligned_cols=72  Identities=21%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccccc-CCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVED-NGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      ||+++..+..+++++|+++|.++.  .+| ..|+||||.|..+|+.+|+-.| ..|..+.++|..|.+||-.-++.
T Consensus        56 lH~~~S~~k~~~l~wLlqhGidv~--vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   56 LHIAVSENKNSFLRWLLQHGIDVF--VQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             eeeeeccchhHHHHHHHhcCceee--eccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhhc
Confidence            689999999999999999999998  555 4699999999999999999999 99999999999999999987763

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.72  E-value=4.6e-08  Score=71.36  Aligned_cols=119  Identities=19%  Similarity=0.065  Sum_probs=92.9

Q ss_pred             hhhhcCChhhhhHhhccCCC--CCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            3 KALVEGDGEVVHFLGKLDLE--SRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         3 ~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      .|+..|+...|+..++....  .+.+..|.-|+++++.|..+.+.+++++| ..+...       ..+|.+|+..|..++
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~  103 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPL  103 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHH
Confidence            58899999999999875443  44457888999999999999999999999 665433       358999999999999


Q ss_pred             HHHHHHHhhhcc-hhh---hhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHN-LEH---LFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~-~~~---~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      ++.++.+-.... ++.   .-...-..+-||+.+||..+ +||+++|+++|+..
T Consensus       104 VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  104 VELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            999998744321 000   01123346789999999999 99999999999863

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.63  E-value=2.3e-07  Score=62.55  Aligned_cols=55  Identities=22%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             HHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhh
Q 040650           35 PLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKR   89 (136)
Q Consensus        35 ~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~   89 (136)
                      -|.+||+.|..+.++.| +.|.++|..|....+||.+|+..|+.+++++|+++|+-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            45566666666666666 66666666666666666666666666666666666664

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.59  E-value=5.8e-08  Score=71.78  Aligned_cols=87  Identities=22%  Similarity=0.208  Sum_probs=76.8

Q ss_pred             CCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHH
Q 040650           30 NGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILH  108 (136)
Q Consensus        30 ~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~  108 (136)
                      ..|-+++|.|+.++.....++| .++++++..|..|++|+|.+...|+......++.+|++      .++.+..|.+|++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~------~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD------PNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc------ccccCccCcchhh
Confidence            4578999999999999999999 99999999999999999999999999999999999999      5599999999999


Q ss_pred             HHHhcC-HHHHHHHH
Q 040650          109 LAALNK-LIVVKILM  122 (136)
Q Consensus       109 ~a~~~~-~~~~~~Ll  122 (136)
                      +|.... .+.+-++.
T Consensus       728 ~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  728 IAMEAANADIVLLLR  742 (785)
T ss_pred             HHhhhccccHHHHHh
Confidence            997666 55444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=3.9e-07  Score=61.50  Aligned_cols=57  Identities=28%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           65 ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        65 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      ..-|..|++.|+.+.+++|++.|.+      +|.+|.....||.+|+..| ..++++|+++|+.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4468899999999999999999998      8899999999999999999 9999999999983

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.45  E-value=6.2e-07  Score=55.11  Aligned_cols=63  Identities=19%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CCCcccccCCCCcHHHHHHHcCChhhHHHh-hcc-cCccccCCCCCcHHHHHHHhCCHHHHHHHHHH
Q 040650           22 ESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASS-ESLAKLTSNDETALILAVKNSQIDAFKILMEE   86 (136)
Q Consensus        22 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~   86 (136)
                      +++  ..|..|||++..|+.-|..+.+.+| ..| +.+...|..+.+.+-+|-..|..+++..|.+.
T Consensus         4 ~in--~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NIN--ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             Ccc--chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            444  7778888888888888888888888 666 67777778888888888888888888887765

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.35  E-value=2e-07  Score=69.38  Aligned_cols=95  Identities=16%  Similarity=0.033  Sum_probs=74.8

Q ss_pred             ccCCCCcHHHHHHHcCChhhHHHh-hc-ccCccccCCCCCcHHHHHHHhCCHHHHHHH-HHHhhhcchhhhhcccccCCC
Q 040650           28 EDNGLMTPLHRAAVDGDGGVITEI-AS-SESLAKLTSNDETALILAVKNSQIDAFKIL-MEETKRHNLEHLFSATDKEGN  104 (136)
Q Consensus        28 ~~~~g~~~l~~a~~~~~~~~~~~l-~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L-l~~~~~~~~~~~~~~~~~~~~  104 (136)
                      ....|++.+|+++..+....++.+ +. +......|..|...+|++ ..+..++.-++ ...|..      ++.+|..||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~a------i~i~D~~G~  642 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPISADGVA------IDIRDRNGW  642 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEEeecccc------cccccCCCC
Confidence            455789999999999998888888 43 555666778888889984 44444544333 455666      779999999


Q ss_pred             hHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650          105 SILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       105 t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ||||+|+..| ..++..|+..|+.+.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccc
Confidence            9999999999 999999999988764

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.31  E-value=8.5e-07  Score=65.84  Aligned_cols=81  Identities=21%  Similarity=0.296  Sum_probs=74.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|+..+...++++|++.|++++  ..|..|.+|+|.+...|+......+ +.+++.+..+..|.+|+.+|....+.+.
T Consensus       660 lh~a~~~~~~~~~e~ll~~ga~vn--~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~  737 (785)
T KOG0521|consen  660 LHVAVGTGDSGAVELLLQNGADVN--ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADI  737 (785)
T ss_pred             hhhhhccchHHHHHHHHhcCCcch--hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccH
Confidence            689999999999999999999998  9999999999999999999999999 9999999999999999999988866666


Q ss_pred             HHHH
Q 040650           80 FKIL   83 (136)
Q Consensus        80 ~~~L   83 (136)
                      +-++
T Consensus       738 ~~l~  741 (785)
T KOG0521|consen  738 VLLL  741 (785)
T ss_pred             HHHH
Confidence            5544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.00  E-value=3.1e-05  Score=47.86  Aligned_cols=65  Identities=18%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             ccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHh-hhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh
Q 040650           54 SESLAKLTSNDETALILAVKNSQIDAFKILMEET-KRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR  124 (136)
Q Consensus        54 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~  124 (136)
                      +.++|.+|..|+|+++.|+..|..+.+.||+.+| +.      +...|..+.+...+|-+.| .++++.|.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~------vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF------VGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc------ccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            3567788888888888888888888888888888 55      6688888888888888888 8888887665

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.73  E-value=7.7e-05  Score=52.32  Aligned_cols=63  Identities=21%  Similarity=0.073  Sum_probs=46.3

Q ss_pred             hhhHHHh-hcccCcccc------CCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhc
Q 040650           45 GGVITEI-ASSESLAKL------TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN  113 (136)
Q Consensus        45 ~~~~~~l-~~~~~~~~~------~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  113 (136)
                      +..+++| +.+...|..      +..-.|+||+|+..|..+++.+|++.|.+      ...+|..|.||+.++...
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D------p~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD------PSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC------chhcccCCCCcccccccH
Confidence            4556666 555444322      33356889999999999999999999877      558899999998887744

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.71  E-value=4.6e-05  Score=53.39  Aligned_cols=69  Identities=17%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             hhhhhHhhccCCCCC----cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650           10 GEVVHFLGKLDLESR----PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus        10 ~~~~~~ll~~~~~~~----~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ...+++|.+++...+    +...+..-.|+||||+..|..+++.+| +.++++..+|..|+||..++.......
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKS  477 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHH
Confidence            456777777665553    223345577999999999999999999 888999999999999999987443333

>smart00248 ANK ankyrin repeats

Probab=97.66  E-value=0.00011  Score=30.48  Aligned_cols=24  Identities=50%  Similarity=0.548  Sum_probs=16.9

Q ss_pred             CChHHHHHHhcC-HHHHHHHHHhcc
Q 040650          103 GNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus       103 ~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      |.||+|+|+..+ .++++.|++.|.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            567777777777 777777777665

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.52  E-value=0.00036  Score=51.82  Aligned_cols=82  Identities=16%  Similarity=0.107  Sum_probs=63.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCcc----------ccCCCCCcHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLA----------KLTSNDETALI   69 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~----------~~~~~~~t~l~   69 (136)
                      |+.|....+.+++++|++...  .  .     ..+|.+|+..|..+.++.+ .......          ..-..+.||+.
T Consensus        66 l~iai~nenle~~eLLl~~~~--~--~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli  136 (822)
T KOG3609|consen   66 LHIAIDNENLELQELLLDTSS--E--E-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM  136 (822)
T ss_pred             eecccccccHHHHHHHhcCcc--c--c-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH
Confidence            567888999999999998642  1  1     4688899999999999988 3322211          11234789999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcc
Q 040650           70 LAVKNSQIDAFKILMEETKRHN   91 (136)
Q Consensus        70 ~a~~~~~~~~~~~Ll~~~~~~~   91 (136)
                      +|++..+.+|+++|+.+|+...
T Consensus       137 LAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  137 LAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999999999998754

>smart00248 ANK ankyrin repeats

Probab=97.40  E-value=0.0003  Score=29.03  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHhhh
Q 040650           64 DETALILAVKNSQIDAFKILMEETKR   89 (136)
Q Consensus        64 ~~t~l~~a~~~~~~~~~~~Ll~~~~~   89 (136)
                      +.||+|+|+..++.++++.|+..+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.41  E-value=0.019  Score=36.96  Aligned_cols=88  Identities=8%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             cHHHHHHHcCChhhHHHh-hcccCccccCC----CCCcHHHHH--HHhCCHHHHHHHHHHhhhcchhhhhcc---cccCC
Q 040650           34 TPLHRAAVDGDGGVITEI-ASSESLAKLTS----NDETALILA--VKNSQIDAFKILMEETKRHNLEHLFSA---TDKEG  103 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~----~~~t~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~~---~~~~~  103 (136)
                      +++-++...+...++.+| .. -....+|.    .+.--+-++  .......++++++++|-- +    +|.   +-..|
T Consensus       181 ~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv-~----vN~~F~~~NSG  254 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLV-D----VNKKFQKVNSG  254 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhcccc-c----cchhhhccCCc
Confidence            566677777777787777 21 11111111    111122332  334457888888888732 1    222   34589


Q ss_pred             ChHHHHHHhcC-HHHHHHHHHhccC
Q 040650          104 NSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus       104 ~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      .|-|.-|.+.+ .+|+.+||.+|+.
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCcc
Confidence            99999999999 9999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.61  E-value=0.28  Score=30.67  Aligned_cols=44  Identities=7%  Similarity=-0.150  Sum_probs=27.5

Q ss_pred             hhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh
Q 040650            3 KALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI   51 (136)
Q Consensus         3 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l   51 (136)
                      .|++.+.+.+++..-+.....     -...+..+-.||.....++++|+
T Consensus        52 HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI   95 (192)
T PF03158_consen   52 HAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWI   95 (192)
T ss_pred             HHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHH
Confidence            466667777766654432111     13456677778888888888887

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.29  E-value=0.15  Score=27.05  Aligned_cols=40  Identities=18%  Similarity=0.171  Sum_probs=19.4

Q ss_pred             hhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh
Q 040650            3 KALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI   51 (136)
Q Consensus         3 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l   51 (136)
                      .|+..|+.|+++.+++.+. +     +   ...+..|+...+.+++++|
T Consensus        12 ~Ai~GGN~eII~~c~~~~~-~-----~---~~~l~~AI~~H~n~i~~~l   51 (76)
T PF11929_consen   12 YAIIGGNFEIINICLKKNK-P-----D---NDCLEYAIKSHNNEIADWL   51 (76)
T ss_pred             HHHhCCCHHHHHHHHHHhc-c-----H---HHHHHHHHHHhhHHHHHHH
Confidence            4555555555555554321 1     0   1234555555555555555

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.04  E-value=1.4  Score=23.27  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             cHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHH
Q 040650           34 TPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEE   86 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~   86 (136)
                      ..+..|+.+|+.++++.+ ..+ .+      ....+..|+..-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            356777788888887766 432 11      14667777777778888887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=85.11  E-value=0.98  Score=28.36  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             cHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 040650           34 TPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILME   85 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~   85 (136)
                      .-+..|+..|-...+... +.|.+++.      ++|..|+.+.+..++.+++.
T Consensus       145 ~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  145 QHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            456778888888866555 77776653      68999999999999888763

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.88  E-value=2.7  Score=27.54  Aligned_cols=83  Identities=11%  Similarity=0.048  Sum_probs=52.4

Q ss_pred             hhhcCChhhhhHhhccC----CCCCcccccCCCCcHHHHHHH--cCChhhHHHh-hcc-cCcccc---CCCCCcHHHHHH
Q 040650            4 ALVEGDGEVVHFLGKLD----LESRPVVEDNGLMTPLHRAAV--DGDGGVITEI-ASS-ESLAKL---TSNDETALILAV   72 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~----~~~~~~~~~~~g~~~l~~a~~--~~~~~~~~~l-~~~-~~~~~~---~~~~~t~l~~a~   72 (136)
                      ++..+..+++-+|+++-    .++.   .-..+..-+-|+..  ..+..+++++ ..| +++|.+   -..|.|.|.-|+
T Consensus       186 si~~~K~dva~~lls~f~ft~~dv~---~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~  262 (284)
T PF06128_consen  186 SIGNAKEDVALYLLSKFNFTKQDVA---SMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAM  262 (284)
T ss_pred             HhcccHHHHHHHHHhhcceecchhh---hcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHH
Confidence            34455566777777642    1111   11123334444433  4556777776 443 455543   357999999999


Q ss_pred             HhCCHHHHHHHHHHhhh
Q 040650           73 KNSQIDAFKILMEETKR   89 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~   89 (136)
                      .+++.+++.+|+.+|+.
T Consensus       263 Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  263 KYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCcHHHHHHHHHcCcc
Confidence            99999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
           +H A   G  EVV  L  L+  +    +D    TPLH AA +G   V+  +  A ++  A
Sbjct: 6   LHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIV 117
           K   N  T L LA +N  ++  K+L+E           +A DK G + LHLAA N  L V
Sbjct: 64  K-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEV 116
Query: 118 VKILM 122
           VK+L+
Sbjct: 117 VKLLL 121

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 34  TPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
           TPLH AA +G   V+  +  A ++  AK   N  T L LA +N  ++  K+L+E      
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 92  LEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
                +A DK G + LHLAA N  L VVK+L+
Sbjct: 61  ----VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-04
2rfa_A	232	Transient receptor potential cation channel subfa	2e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	8e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-05
2pnn_A	273	Transient receptor potential cation channel subfa	5e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-04

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLT 61
            +AL   +      L     E   +   +   T   +    G     T +  S  +A+  
Sbjct: 17  FRALYTFEPRTPDEL--YIEEGDIIYITDMSDTNWWKGTSKGR----TGLIPSNYVAEQA 70

Query: 62  SNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKI 120
            + +  L  A K   +   +  ++   R  +       DK G++ L+ A       +V++
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLD--NRVGVN----GLDKAGSTALYWACHGGHKDIVEM 124

Query: 121 L 121
           L
Sbjct: 125 L 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 14/94 (14%)

Query: 30  NGLMTPLHRAAVDGDGGVITEIASSES-LAKLTSNDETALILAVKNSQIDAFKILMEETK 88
            G    + RA    +     E+   E  +  +T   +T         +           +
Sbjct: 11  PG-QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 69

Query: 89  RHNLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
                       +  ++ LH AA    L  ++  
Sbjct: 70  -----------AESIDNPLHEAAKRGNLSWLREC 92

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
           H A++  +  +   + +        +   +N   TPLH A +        EIA  E+L  
Sbjct: 13  HLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ----PEIA--EALLG 66

Query: 58  --AKLTSNDE---TALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL 112
                   D    T L LA +   + +  +L +     +L  +  AT+  G++ LHLA++
Sbjct: 67  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126

Query: 113 -NKLIVVKIL 121
              L +V++L
Sbjct: 127 HGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 25/133 (18%)

Query: 2   HKALVEGDGEVVHFL--GKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL 57
           H A  +G    V  L           +++  +    T LH A++ G       I   E L
Sbjct: 83  HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY----LGIV--ELL 136

Query: 58  --------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHL 109
                   A+   N  TAL LAV     D   +L++     ++         +G S   L
Sbjct: 137 VSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK--CGADVN----RVTYQGYSPYQL 190

Query: 110 AALNKLI-VVKIL 121
                   + + L
Sbjct: 191 TWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 21/103 (20%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESL----AKLTSND---ETALILAVKNSQIDAFK 81
           ++G  + LH A +  +  +  E+     +    A L   +   +T L LAV  +Q +  +
Sbjct: 6   EDG-DSFLHLAIIHEEKALTMEVI--RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 82  ILMEETKRH--NLEHLFSATDKEGNSILHLAALNK-LIVVKIL 121
            L+        + E      D  GN+ LHLA     L  V +L
Sbjct: 63  ALLG----AGCDPE----LRDFRGNTPLHLACEQGCLASVGVL 97

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 17/133 (12%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL--- 57
           +     E   ++  FL  ++  +          T        G   +       +     
Sbjct: 46  LRNNNDEARYKISMFL--INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103

Query: 58  -----AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHL---FSATDKEGNSILHL 109
                A      +  +   + N  +D  +  M    +             DK G + L  
Sbjct: 104 GADITAL-YKPYKIVVFKNIFNYFVDENE--MIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

Query: 110 AAL-NKLIVVKIL 121
                K I +K++
Sbjct: 161 VKRCQKPIALKMM 173

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 23/129 (17%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
                  + EV     ++       V+     T LH     G      E+   + L    
Sbjct: 116 SLLNECDEREVN----EIGSH----VKHCKGQTALHWCVGLGPEY--LEMI--KILVQLG 163

Query: 58  ----AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL- 112
               AK    DET L+ A++    +A  ++M+     +   L    +K+GNS LH A L 
Sbjct: 164 ASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILI 221

Query: 113 NKLIVVKIL 121
           N   V    
Sbjct: 222 NWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 24/103 (23%)

Query: 28  EDNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDA 79
            D+  M  +H AA  G     T+      L         +      TAL LA K   +D 
Sbjct: 16  SDDENMEKIHVAARKGQ----TDEV--RRLIETGVSPTIQ-NRFGCTALHLACKFGCVDT 68

Query: 80  FKILMEETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
            K L               +   G   +HLA + NK  +V  L
Sbjct: 69  AKYL--------ASVGEVHSLWHGQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 31/143 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A  +G  + V  L  ++    P +++    T LH A   G      + A  + L    
Sbjct: 25  HVAARKGQTDEVRRL--IETGVSPTIQNRFGCTALHLACKFGC----VDTA--KYLASVG 76

Query: 58  AKLTSND-ETALILAVKNSQIDAFKILME------ETKRHNL---------EHLFSATDK 101
              +    +  + LAV  ++ D    L+E      +     L         E        
Sbjct: 77  EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC 136

Query: 102 EGNSILHLAAL---NKLIVVKIL 121
           +G + LH         L ++KIL
Sbjct: 137 KGQTALHWCVGLGPEYLEMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 29  DNGLMTPLHRAAVDGDGGV----ITEIASSESLA--KLTSNDETALILAVKNSQIDAFKI 82
           D    TPL RA    +       +  + S  SL          + L  A+  +  D    
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 83  LMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
            +E     ++       D E    L+L+     +++ K L
Sbjct: 230 FVE--MGIDVN----MEDNEHTVPLYLSVRAAMVLLTKEL 263

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 25/131 (19%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
            +A  E D   V     L LE     +     T LH A          ++A  E L    
Sbjct: 183 LQAAREADLAKVKKT--LALEIINFKQPQSHETALHCAVASLHPKRK-QVA--ELLLRKG 237

Query: 58  ----AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHLAA 111
                K   +  T L +A + +  D  ++L +    H   +     A D  G + LH AA
Sbjct: 238 ANVNEK-NKDFMTPLHVAAERAHNDVMEVLHK----HGAKMN----ALDSLGQTALHRAA 288

Query: 112 LNK-LIVVKIL 121
           L   L   ++L
Sbjct: 289 LAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 13/102 (12%)

Query: 25  PVVEDNGLMTPLHRAAVDGDGGVITE--IASSESLAKLTSNDETALILAVKNSQIDAFKI 82
            V+        L  AA  G+   +       + +         T L LA   +++   ++
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 83  LMEETKRH--NLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
           L++    H  ++     A DK G   LH A       V ++L
Sbjct: 77  LLQ----HGADVH----AKDKGGLVPLHNACSYGHYEVTELL 110

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 24/133 (18%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
           H A+V+G+   VH L  L  +    ++  +N   TPLH A +         +     L  
Sbjct: 14  HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL----PSVV--RLLVT 67

Query: 58  ------AKLTSNDETALILAVKNSQIDAFKILMEE--TKRHNLEHLFSATDKEGNSILHL 109
                 A    + +TA  LA ++      + L++       +LE    A + +G + LH+
Sbjct: 68  AGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE----ARNYDGLTALHV 122

Query: 110 AAL-NKLIVVKIL 121
           A        V++L
Sbjct: 123 AVNTECQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 31/135 (22%)

Query: 2   HKALVEGDGEVVHFL------GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSE 55
           H A        +  L      G LDLE+R    +   +T LH A          E    +
Sbjct: 84  HLACEHRSPTCLRALLDSAAPGTLDLEAR----NYDGLTALHVAVNTEC----QETV--Q 133

Query: 56  SL--------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSIL 107
            L        A    +  + LI AV+N+ +   ++L++     N+     A    G+S L
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ--HGANVN----AQMYSGSSAL 187

Query: 108 HLAALNKLI-VVKIL 121
           H A+   L+ +V+ L
Sbjct: 188 HSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 34  TPLHRAAVDGDGGVITEIASSESLA-----KLTSNDETALILAVKNSQIDAFKILMEETK 88
           TPLH A V G+   +  + +             +  +T L LAV  +     ++L+    
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT--- 67

Query: 89  RH--NLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
               +      A D+ G +  HLA        ++ L
Sbjct: 68  -AGASPM----ALDRHGQTAAHLACEHRSPTCLRAL 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 28/134 (20%)

Query: 2   HKALVEGDGEVVHFL---GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL- 57
             A  +G  EV+  L      D+ +     DN     L  A +  D   +  I     L 
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNAC----DNMGRNALIHALLSSDDSDVEAIT--HLLL 206

Query: 58  -------AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILH 108
                   +     +T LILAV+   +   + L+E   +    +      TD +G + L 
Sbjct: 207 DHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLE---QEHIEIN----DTDSDGKTALL 258

Query: 109 LAALNKLI-VVKIL 121
           LA   KL  + ++L
Sbjct: 259 LAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 22/133 (16%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A+     ++V  L  L   + PV+      TP   AA+ G      ++   +      
Sbjct: 44  HNAVQMSREDIVELL--LRHGADPVLRKKNGATPFLLAAIAGS----VKLL--KLFLSKG 95

Query: 58  ----AKLTSNDETALILAVKNSQIDAFKILMEE----TKRHNLEHLFSATDKEGNSILHL 109
                       TA + A    ++ A K L +       R   +       K G + L  
Sbjct: 96  ADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 110 AAL-NKLIVVKIL 121
           AA    + V+KIL
Sbjct: 155 AAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 27/131 (20%)

Query: 2   HKALVEGDGEVVHFL--GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
            KA+   D ++V  L  G  ++  +   E+ G  TPLH A          +I   E L  
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQ---EEEGGWTPLHNAVQMSR----EDIV--ELLLR 60

Query: 58  ------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
                  +   N  T  +LA     +   K+ +   K  ++       D  G +    AA
Sbjct: 61  HGADPVLR-KKNGATPFLLAAIAGSVKLLKLFLS--KGADVN----ECDFYGFTAFMEAA 113

Query: 112 L-NKLIVVKIL 121
           +  K+  +K L
Sbjct: 114 VYGKVKALKFL 124

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 29  DNGLMTPLHRAAVDGDGGV----ITEIASSESLAKLTSNDETALILAVKNSQIDAFKILM 84
           D     PLH +       +    ++++ +         +  T   +A     ++  K L 
Sbjct: 33  DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92

Query: 85  EETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
           +   + +L         +G + LHLA       V + L
Sbjct: 93  DRPLKPDLN----KITNQGVTCLHLAVGKKWFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 16/98 (16%)

Query: 33  MTPLHRAAVDGDGGVITEIASSE--SLAKLTSNDETALILAVKNSQIDAFKILMEETKRH 90
             PLH+A ++ +   + E+  S+   L +   +    L  +V     +    L       
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL------- 55

Query: 91  NLEH-----LFSATDKEGNSILHLAAL-NKLIVVKILM 122
            L       L    D  G +  H+A     L VVK L 
Sbjct: 56  -LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 17/125 (13%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL- 60
           H A+ +   EV  FL  ++  +   ++D     PLHRAA  G   +I E+      + + 
Sbjct: 112 HLAVGKKWFEVSQFL--IENGASVRIKDKFNQIPLHRAASVGSLKLI-ELLCGLGKSAVN 168

Query: 61  --TSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHLAALNKLI 116
                  T L  A+     DA  +L+E   ++    +      D +G     +A   +  
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVE---KYGAEYD----LVDNKGAKAEDVALNEQ-- 219

Query: 117 VVKIL 121
           V K  
Sbjct: 220 VKKFF 224

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 16/97 (16%)

Query: 34  TPLHRAAVDGDGGVITEIASSESL---AKLTSNDETALILAVKNSQIDAFKILME----- 85
           +PL  AA + D   ++++   E      +  +  ETAL +A     ++A  +LME     
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 86  ETKRHNLEHLFSATDKEGNSILHLAALNKLI-VVKIL 121
             +         +   EG + LH+A +N+ + +V+ L
Sbjct: 64  VFEPMT------SELYEGQTALHIAVINQNVNLVRAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 26/145 (17%), Positives = 46/145 (31%), Gaps = 31/145 (21%)

Query: 2   HKALVEGDGEVVHFL-----------GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE 50
           H A++  +  +V  L                  RP         PL  AA  G      E
Sbjct: 80  HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS----EE 135

Query: 51  IASSESL--------AKLTSNDETALILAVKNSQID----AFKILMEETKRHNLEHLFSA 98
           I     L        A+  S   T L + +           + +L+      +L+ L   
Sbjct: 136 IV--RLLIEHGADIRAQ-DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV 192

Query: 99  TDKEGNSILHLAAL-NKLIVVKILM 122
            + +G +   LA +   +++ + LM
Sbjct: 193 PNNQGLTPFKLAGVEGNIVMFQHLM 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 8/95 (8%)

Query: 28  EDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEET 87
           E  G    L            +E  +     K        L+ +    + D  + ++   
Sbjct: 2   EITG-QVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY-- 58

Query: 88  KRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
           +  +        + EG + LH A       +VK L
Sbjct: 59  EVDDPS----LPNDEGITALHNAVCAGHTEIVKFL 89

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLT 61
           H A   G  EV  +L  L  +++   +     TPLH AA  G   ++  +  + +   L 
Sbjct: 52  HMAARAGHTEVAKYL--LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109

Query: 62  SND-ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVK 119
           +    T L +A +   ++    L+E  K  +         K+G + LH+AA   K+ V +
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLE--KEASQA----CMTKKGFTPLHVAAKYGKVRVAE 163

Query: 120 ILM 122
           +L+
Sbjct: 164 LLL 166

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 10/122 (8%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE-IASSESLAKL 60
           H A+   + ++V  L  L     P        TPLH AA      V    +    S    
Sbjct: 184 HVAVHHNNLDIVKLL--LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 241

Query: 61  TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVK 119
           +    T L LA +    +   +L+   K+ N        +K G + LHL A    + V  
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLS--KQANGN----LGNKSGLTPLHLVAQEGHVPVAD 295

Query: 120 IL 121
           +L
Sbjct: 296 VL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 30/132 (22%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL- 60
           H A  EG  E V  L  L+ E+          TPLH AA  G             +A+L 
Sbjct: 118 HIAAREGHVETVLAL--LEKEASQACMTKKGFTPLHVAAKYG----------KVRVAELL 165

Query: 61  ----------TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
                       N  T L +AV ++ +D  K+L+   +  +      +    G + LH+A
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP--RGGSPH----SPAWNGYTPLHIA 219

Query: 111 AL-NKLIVVKIL 121
           A  N++ V + L
Sbjct: 220 AKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITE-IASSESLA 58
           H A   G   V   L    LE            +TPLH A    +  ++   +    S  
Sbjct: 151 HVAAKYGKVRVAELL----LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206

Query: 59  KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIV 117
               N  T L +A K +Q++  + L++     +      A   +G + LHLAA      +
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQ--YGGSAN----AESVQGVTPLHLAAQEGHAEM 260

Query: 118 VKILM 122
           V +L+
Sbjct: 261 VALLL 265

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 26/130 (20%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A   G   +V  L  L   + P V +  + TPLH AA  G     TE+A  + L    
Sbjct: 19  HVASFMGHLPIVKNL--LQRGASPNVSNVKVETPLHMAARAGH----TEVA--KYLLQNK 70

Query: 58  AKL---TSNDETALILAVKNSQIDAFKILMEETKRHNLEHL--FSATDKEGNSILHLAAL 112
           AK+     +D+T L  A +    +  K+L        LE+    +     G++ LH+AA 
Sbjct: 71  AKVNAKAKDDQTPLHCAARIGHTNMVKLL--------LENNANPNLATTAGHTPLHIAAR 122

Query: 113 NKLI-VVKIL 121
              +  V  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE-IASSESLAKL 60
           H A  EG  E+V  L  L  ++   + +   +TPLH  A +G   V    I     +   
Sbjct: 250 HLAAQEGHAEMVALL--LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT 307

Query: 61  TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVK 119
           T    T L +A     I   K L++   + ++     A  K G S LH AA      +V 
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQ--HQADVN----AKTKLGYSPLHQAAQQGHTDIVT 361

Query: 120 IL 121
           +L
Sbjct: 362 LL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSND-ETALILAVKNSQIDAFKILMEET 87
               +TPLH A+  G   ++  +    +   +++   ET L +A +    +  K L++  
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-- 68

Query: 88  KRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
            +  +     A  K+  + LH AA      +VK+L
Sbjct: 69  NKAKVN----AKAKDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 14/127 (11%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE-IASSESLAK 59
           +H    EG   V   L  +              TPLH A+  G+  ++   +     +  
Sbjct: 282 LHLVAQEGHVPVADVL--IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339

Query: 60  LTSNDETALILAVKNSQIDAFKILMEETKRHNLEH--LFSATDKEGNSILHLAA-LNKLI 116
            T    + L  A +    D   +L        L++    +    +G + L +A  L  + 
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLL--------LKNGASPNEVSSDGTTPLAIAKRLGYIS 391

Query: 117 VVKILML 123
           V  +L +
Sbjct: 392 VTDVLKV 398

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESLAK 59
           H A   G+ ++V FL    L+ +  V        +PLH+AA  G   ++T +  + +   
Sbjct: 316 HVASHYGNIKLVKFL----LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 60  LTSND-ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL 112
             S+D  T L +A +   I    +L   T   +       +DK   S       
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS---FVLVSDKHRMSFPETVDE 422

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 14/100 (14%)

Query: 28  EDNGLMTPLHRAAVDGDGGVITEI-----ASSESLAKLTSNDETALILAVKNSQIDAFKI 82
            D   MTPL  AA        T +      S         +  TAL  AV         +
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALHWAVLAGNTTVISL 195

Query: 83  LMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKIL 121
           L+E     N++    A + +G S L LA   K + ++  L
Sbjct: 196 LLE--AGANVD----AQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 31/133 (23%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
            KA   G  E    L    +E+   V   D   +T LH AA++       ++   +    
Sbjct: 14  VKATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNR----IDLV--KYYIS 63

Query: 58  ------AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHL 109
                       + T L  A +   +     LM+    +  +        D EG S +HL
Sbjct: 64  KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK----YGADPS----LIDGEGCSCIHL 115

Query: 110 AALN-KLIVVKIL 121
           AA      +V  L
Sbjct: 116 AAQFGHTSIVAYL 128

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 24/123 (19%)

Query: 2   HKALVEGDGEVVHFL-GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL 60
             A      +VV +L       +     D+   T LH   +  D                
Sbjct: 141 SLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD---------------- 184

Query: 61  TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA-LNKLIVVK 119
            S + +AL++ + +  +     L    +          ++ +G + L LAA   K+ + +
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEE------ISNHQGLTPLKLAAKEGKIEIFR 238

Query: 120 ILM 122
            ++
Sbjct: 239 HIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 19/101 (18%)

Query: 28  EDNGLMTPLHRAAVDGDGGVI--------------TEIASSESLAKLTSNDETALILAVK 73
           E     + LH A        +                    +         E  L LA  
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 74  NSQIDAFKILMEETKRH-NLEHLFSATDKEGNSILHLAALN 113
             Q D    L+E   +  +LE    ATD  GN++LH   + 
Sbjct: 146 TKQWDVVTYLLENPHQPASLE----ATDSLGNTVLHALVMI 182

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 41/151 (27%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
           H+A ++ + ++V FL    +E+   +   DN    PLH AA  G      +IA  E L  
Sbjct: 78  HQACIDDNVDMVKFL----VENGANINQPDNEGWIPLHAAASCGY----LDIA--EYLIS 127

Query: 58  -----AKLTSNDETALILAVKNSQIDAFKILME------ETKRHN---------LEHLFS 97
                  + S  +T L +A + +  +  +  +       E  R            + L S
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187

Query: 98  ------ATDKEGNSILHLAALN-KLIVVKIL 121
                    K G + LH+AA      V+K+L
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 14/127 (11%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLT 61
            +    G+  +  F         P   +      LH  A  G   +   I          
Sbjct: 66  PQGYGNGNDFLGDFNHTNLQI--PTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDP 122

Query: 62  SNDETALILAVKNSQIDAFKILMEETKRHNLEHLFS------ATDKEGNSILHLAAL-NK 114
            ++ T L     NS  +  + L+     H  +   +      A D + N+ L LA L  +
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIV----HEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

Query: 115 LIVVKIL 121
             +V  L
Sbjct: 179 RRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 30/140 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVV------EDNGLMTPLHRAAVDGDGGVITEIASSE 55
           H        E    L   + +            D    TPL  A +         +    
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR----RRLV--A 183

Query: 56  SL--------AKLTSNDETALILAVKNSQIDAFKILMEETKRH-NLEHLFSATDKEGNSI 106
            L             ++ +AL  A  N        ++  TK   ++E      D+ G + 
Sbjct: 184 YLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE----ELDRNGMTA 238

Query: 107 LHLAALN----KLIVVKILM 122
           L + A N    ++   K+L+
Sbjct: 239 LMIVAHNEGRDQVASAKLLV 258

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 27/138 (19%)

Query: 2   HKALVEGDGEVV-----HFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVIT------- 49
           H+A    D  ++         K D+E      D   MT L   A +     +        
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEEL----DRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 50  -----EIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGN 104
                +   +           TAL  A + S +   K L+ E K  N +      D++G 
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE-KGSNKD----KQDEDGK 314

Query: 105 SILHLAALN-KLIVVKIL 121
           + + LAA   ++ VV  L
Sbjct: 315 TPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 10/94 (10%), Positives = 17/94 (18%), Gaps = 14/94 (14%)

Query: 28  EDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEET 87
                   L  A+ DG               +L             N             
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRN--------ELQHYSLYPNPQGYGNGNDFLGDFNHTNL 84

Query: 88  KRHNLEHLFSATDKEGNSILHLAALNKLIVVKIL 121
           +           + E    LH  A     + + +
Sbjct: 85  QIPT------EPEPESPIKLHTEAAGSYAITEPI 112

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESLAKL---TSNDETALILAVKNSQIDAFKILME 85
                T LH AA   +  ++ +    E  +       + +T ++LA +  +I+    L++
Sbjct: 276 KYKGRTALHYAAQVSNMPIV-KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334

Query: 86  ETKRH--NLEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
                  ++E    A D   ++   LA  N    +V I  
Sbjct: 335 ----QGASVE----AVDATDHTARQLAQANNHHNIVDIFD 366

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 39/134 (29%)

Query: 2   HKALVEGDGEVVHFL-----GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVIT------- 49
             A       +V FL        D+ +R    D+   T LH      D  V         
Sbjct: 153 SLAACTNQLAIVKFLLQNSWQPADISAR----DSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 50  ---------EIASSESLAKLTSND-ETALILAVKNSQIDAFKILMEETKRHNLEHLFSAT 99
                    ++  +  L ++T+    T L LA  + +I     +++              
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR------------- 255

Query: 100 DKEGNSILHLAALN 113
           +       H AA +
Sbjct: 256 EIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 32/140 (22%)

Query: 2   HKALV---EGDGEVVHFL----GKLDLESRPV-----VEDNGLMTPLHRAAVDGDGGVI- 48
            KA++    G  + +  L     K D   + V            T LH A    +  ++ 
Sbjct: 59  LKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVT 118

Query: 49  --------------TEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEE-TKRHNLE 93
                          +              E  L LA   +Q+   K L++   +  ++ 
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 94  HLFSATDKEGNSILHLAALN 113
               A D  GN++LH     
Sbjct: 179 ----ARDSVGNTVLHALVEV 194

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 29/132 (21%)

Query: 2   HKALVEGDGEVVHFL---GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL- 57
                EG+   V       + DL       D+   +PLH A  +G     + +   E L 
Sbjct: 10  FTQCREGNAVAVRLWLDNTENDLNQG----DDHGFSPLHWACREGR----SAVV--EMLI 59

Query: 58  -------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
                        D+T L LA  +   D  + L++   + ++     A ++ GN  LH A
Sbjct: 60  MRGARINVM-NRGDDTPLHLAASHGHRDIVQKLLQ--YKADIN----AVNEHGNVPLHYA 112

Query: 111 AL-NKLIVVKIL 121
               +  V + L
Sbjct: 113 CFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 29/131 (22%), Positives = 44/131 (33%), Gaps = 28/131 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A  EG   VV  L  +   +R  V + G  TPLH AA  G      +I   + L    
Sbjct: 44  HWACREGRSAVVEML--IMRGARINVMNRGDDTPLHLAASHGH----RDIV--QKLLQYK 95

Query: 58  ----AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEH--LFSATDKEGNSILHLAA 111
               A    +    L  A    Q    + L        + +  L S  +K G   +  A 
Sbjct: 96  ADINAV-NEHGNVPLHYACFWGQDQVAEDL--------VANGALVSICNKYGEMPVDKAK 146

Query: 112 LN-KLIVVKIL 121
              + ++ +  
Sbjct: 147 APLRELLRERA 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  MTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNL 92
                    DG       + SS   A + S  ET    A + +   A   L+E     ++
Sbjct: 15  AMEYLIEWKDGHSPSW--VPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDV 69

Query: 93  EHLFSATDKEGNSILHLAALN-KLIVVKIL 121
           +    A D+ G + L   A       V++L
Sbjct: 70  D----AVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 26/131 (19%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPV-VEDNGLMTPLHRAAVDGDGGVITEIASSESL--- 57
             A  + D + +  L    LE R V   D    T L   A  G      +      L   
Sbjct: 49  WTAARKADEQALSQL----LEDRDVDAVDENGRTALLFVAGLGS----DKCV--RLLAEA 98

Query: 58  -----AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL 112
                 +      TAL +A    + +  + L+E     ++E      D+ G + L LA  
Sbjct: 99  GADLDHRDMRGGLTALHMAAGYVRPEVVEALVE--LGADIE----VEDERGLTALELARE 152

Query: 113 N-KLIVVKILM 122
             K       M
Sbjct: 153 ILKTTPKGNPM 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 33  MTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNL 92
                    DG       + SS   A + S  ET    A + +   A   L+E     ++
Sbjct: 16  AMEYLIEWKDGHSPSW--VPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDV 70

Query: 93  EHLFSATDKEGNSILHLAALN-KLIVVKIL 121
           +    A D+ G + L   A       V++L
Sbjct: 71  D----AVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 26/132 (19%), Positives = 40/132 (30%), Gaps = 30/132 (22%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPV-VEDNGLMTPLHRAAVDGDGGVITEIASSESL--- 57
             A  + D + +  L    LE R V   D    T L   A  G      +      L   
Sbjct: 50  WTAARKADEQALSQL----LEDRDVDAVDENGRTALLFVAGLGS----DKCV--RLLAEA 99

Query: 58  -----AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHLA 110
                 +      TAL +A    + +  + L+E       ++E      D+ G + L LA
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVE----LGADIE----VEDERGLTALELA 151

Query: 111 ALN-KLIVVKIL 121
               K       
Sbjct: 152 REILKTTPKGNP 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 23/129 (17%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A   G  ++ H L  +   +          TPL  AA +       E    + L    
Sbjct: 16  HAAAEAGHVDICHML--VQAGANIDTCSEDQRTPLMEAAENNH----LEAV--KYLIKAG 67

Query: 58  ----AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN 113
                K  +   T L LA K    +  + L+    + ++       D  G + +  A   
Sbjct: 68  ALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSN-GQMDVN----CQDDGGWTPMIWATEY 121

Query: 114 K-LIVVKIL 121
           K + +VK+L
Sbjct: 122 KHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 22/103 (21%)

Query: 28  EDNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDA 79
           E     +PLH AA  G      +I     L           + +  T L+ A +N+ ++A
Sbjct: 7   EHQNKRSPLHAAAEAGH----VDIC--HMLVQAGANIDTC-SEDQRTPLMEAAENNHLEA 59

Query: 80  FKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
            K L++      ++      D EG++ LHLAA      VV+ L
Sbjct: 60  VKYLIK--AGALVD----PKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 29/132 (21%)

Query: 2   HKALVEGDGEVVHFL--GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
            +A      E V +L      ++ +    D    T LH AA  G      E+   + L  
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVDPK----DAEGSTCLHLAAKKGH----YEVV--QYLLS 98

Query: 58  -------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
                   +      T +I A +   +D  K+L+   K  ++       D E N  LH A
Sbjct: 99  NGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKLLLS--KGSDIN----IRDNEENICLHWA 151

Query: 111 ALN-KLIVVKIL 121
           A +  + + +IL
Sbjct: 152 AFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 28/132 (21%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL--- 57
           M  A      ++V  L  L   S   + DN     LH AA  G      +IA  E L   
Sbjct: 115 MIWATEYKHVDLVKLL--LSKGSDINIRDNEENICLHWAAFSGC----VDIA--EILLAA 166

Query: 58  -----AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHLA 110
                A    + ++ L +A + ++ D   + +        ++       +KEG + L  A
Sbjct: 167 KCDLHAV-NIHGDSPLHIAARENRYDCVVLFLS----RDSDVT----LKNKEGETPLQCA 217

Query: 111 ALN-KLIVVKIL 121
           +LN ++     +
Sbjct: 218 SLNSQVWSALQM 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 20/126 (15%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H+A   G  E V+ L  +        + + L TPL+ A  +            + L    
Sbjct: 162 HEAARRGHVECVNSL--IAYGGNIDHKISHLGTPLYLACENQQ----RACV--KKLLESG 213

Query: 58  AKL--TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKL 115
           A +      ++ L   V+ +  +   +LM+     + +    A + EG   + L      
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMD--FGADTQ----AKNAEGKRPVELVPPESP 267

Query: 116 IVVKIL 121
           +    L
Sbjct: 268 LAQLFL 273

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDAF 80
           D    T LH AA        ++ A  + L         +  +   T L  AV       F
Sbjct: 54  DRTGETALHLAARYSR----SDAA--KRLLEASADANIQ-DNMGRTPLHAAVSADAQGVF 106

Query: 81  KILMEETKRHNLEHLFSATDKEGNSILHLAA-LNKLIVVKIL 121
           +IL+   +  +L+    A   +G + L LAA L    +++ L
Sbjct: 107 QILIRN-RATDLD----ARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 26/106 (24%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDAF 80
           D+   + LH AA   +     + A    L         +  + +ET L LA +    +  
Sbjct: 154 DDLGKSALHWAAAVNN----VDAA--VVLLKNGANKDMQ-NNREETPLFLAAREGSYETA 206

Query: 81  KILMEETKRH--NLEHLFSATDKEGNSILHLAALNK-LIVVKILML 123
           K+L++    H  N +     TD        +A       +V++L L
Sbjct: 207 KVLLD----HFANRD----ITDHMDRLPRDIAQERMHHDIVRLLDL 244

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 31/133 (23%)

Query: 2   HKALVEGDGEVVHFL---GKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL- 57
           H A+      V   L      DL++R     +   TPL  AA          +   E L 
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDAR----MHDGTTPLILAARLAV----EGML--EDLI 112

Query: 58  ---AKLTSND---ETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHL 109
              A + + D   ++AL  A   + +DA  +L++    +  N +      +    + L L
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----NGANKD----MQNNREETPLFL 164

Query: 110 AAL-NKLIVVKIL 121
           AA        K+L
Sbjct: 165 AAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 29/132 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A      +    L  L+  +   ++DN   TPLH A           +   + L    
Sbjct: 30  HLAARYSRSDAAKRL--LEASADANIQDNMGRTPLHAAVSADA----QGVF--QILIRNR 81

Query: 58  -----AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHLA 110
                A+   +  T LILA + +     + L+        ++     A D  G S LH A
Sbjct: 82  ATDLDAR-MHDGTTPLILAARLAVEGMLEDLIN----SHADVN----AVDDLGKSALHWA 132

Query: 111 AL-NKLIVVKIL 121
           A  N +    +L
Sbjct: 133 AAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDAF 80
           D    T LH AA        ++ A  + L         +  +   T L  AV       F
Sbjct: 22  DRTGETALHLAARYSR----SDAA--KRLLEASADANIQ-DNMGRTPLHAAVSADAQGVF 74

Query: 81  KILMEETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
           +IL+   +  +L+    A   +G + L LAA      +++ L
Sbjct: 75  QILIRN-RATDLD----ARMHDGTTPLILAARLAVEGMLEDL 111

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 27  VEDNGLMTPLHRAAVDGDGGVITEI-----ASSESLAKLTSNDETALILAVKNSQIDAFK 81
           V ++G  T LH A +      + +      A  E L       +TAL LA    +    +
Sbjct: 5   VTEDGD-TALHLAVIHQHEPFL-DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 82  ILMEETKRHNLEH--LFSATDKEGNSILHLAAL-NKLIVVKIL 121
            L                  ++ G++ LHLA          +L
Sbjct: 63  KL--------YAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 25/103 (24%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDAF 80
           D G + PLH A   G      E+A  E L                T L  A    + +  
Sbjct: 72  DKGGLVPLHNACSYGH----YEVA--ELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEIC 124

Query: 81  KILMEETKRH--NLEHLFSATDKEGNSILHLAALNKLIVVKIL 121
           K+L++    H  +        +++GN+ L L       +  +L
Sbjct: 125 KLLLQ----HGADPT----KKNRDGNTPLDLVKDGDTDIQDLL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
             A   G+ E V FL  L+  + P +      + L  A+  G     T+I     L    
Sbjct: 41  IWASAFGEIETVRFL--LEWGADPHILAKERESALSLASTGGY----TDIV--GLLLERD 92

Query: 58  AKL---TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN- 113
             +     N  T L+ AV+ + +   + L+   +  +L          G + + LA    
Sbjct: 93  VDINIYDWNGGTPLLYAVRGNHVKCVEALLA--RGADLT----TEADSGYTPMDLAVALG 146

Query: 114 KLIVVKIL 121
              V +++
Sbjct: 147 YRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 36.6 bits (86), Expect = 7e-04
 Identities = 25/132 (18%), Positives = 42/132 (31%), Gaps = 29/132 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE---DNGLMTPLHRAAVDGDGGVITEIASSESL- 57
           H+   +G+ + +       L     +    D    TPL  A+  G+     E      L 
Sbjct: 7   HQLAAQGELDQLKEH----LRKGDNLVNKPDERGFTPLIWASAFGE----IETV--RFLL 56

Query: 58  -------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
                         E+AL LA      D   +L+E  +  ++       D  G + L  A
Sbjct: 57  EWGADPHIL-AKERESALSLASTGGYTDIVGLLLE--RDVDIN----IYDWNGGTPLLYA 109

Query: 111 ALN-KLIVVKIL 121
                +  V+ L
Sbjct: 110 VRGNHVKCVEAL 121

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 16/96 (16%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETK 88
           D                  I +        +  S + T L++A      +A   L+E   
Sbjct: 5   DKNGEIVEKIKDEKS----INQNLDFLRNYR-DSYNRTPLMVACMLGMENAIDKLVE--- 56

Query: 89  RH--NLEHLFSATDKEGNSILHLAAL-NKLIVVKIL 121
            +   LE      D EG++ L  A   N+L + + L
Sbjct: 57  -NFDKLE----DKDIEGSTALIWAVKNNRLGIAEKL 87

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 28/131 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESL---- 57
           H A ++GD   V +L  L   S P V+D+   TPLH A   G      ++   E L    
Sbjct: 15  HIASIKGDIPSVEYL--LQNGSDPNVKDHAGWTPLHEACNHGH----LKVV--ELLLQHK 66

Query: 58  ----AKLTSNDETALILAVKNSQIDAFKILMEETKRH--NLEHLFSATDKEGNSILHLAA 111
                     +++ L  A KN  +D  K+L+     +  +      A +  G   +    
Sbjct: 67  ALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLS----YGASRN----AVNIFGLRPVDYTD 117

Query: 112 LNK-LIVVKIL 121
                 ++ + 
Sbjct: 118 DESMKSLLLLP 128

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 21/100 (21%)

Query: 30  NGLMTPLHRAAVDGDGGVITEIASSESL----AKLTSNDE---TALILAVKNSQIDAFKI 82
                 +H+ A  G+           +       +   DE   T L+ A  + QI   + 
Sbjct: 2   AN-SLSVHQLAAQGE----MLYL--ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54

Query: 83  LMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
           L++     + +       K   S L LA       +VK+L
Sbjct: 55  LLQ--NGADPQ----LLGKGRESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 28/131 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
           H+   +G+   +       +E   V+   D    TPL  AA  G       +   E L  
Sbjct: 8   HQLAAQGEMLYLATR----IEQENVINHTDEEGFTPLMWAAAHGQ----IAVV--EFLLQ 57

Query: 58  ------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
                        E+AL LA      D  K+L++     ++       D  G + L  A 
Sbjct: 58  NGADPQLL-GKGRESALSLACSKGYTDIVKMLLD--CGVDVN----EYDWNGGTPLLYAV 110

Query: 112 LN-KLIVVKIL 121
               +  VK+L
Sbjct: 111 HGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.6 bits (86), Expect = 8e-04
 Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 28/131 (21%)

Query: 2   HKALVEGDGEVVHFLGKLDLESRPVVE--DNGLMTPLHRAAVDGDGGVITEIASSESL-- 57
             A   G   VV FL    L++    +    G  + L  A   G     T+I   + L  
Sbjct: 41  MWAAAHGQIAVVEFL----LQNGADPQLLGKGRESALSLACSKGY----TDIV--KMLLD 90

Query: 58  ------AKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
                      N  T L+ AV  + +   K+L+E     +           G + + LA 
Sbjct: 91  CGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLE--SGADPT----IETDSGYNSMDLAV 143

Query: 112 LN-KLIVVKIL 121
                 V +++
Sbjct: 144 ALGYRSVQQVI 154

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 29  DNGLMTPLHRAAVDGDGGV----ITEIASSESLAKLTSNDETALILAVKNSQIDAFKILM 84
             G  T  + A +  D  +    ++EI S+       +   + + + +KN  +D   +L+
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD----LAILLSCIHITIKNGHVDMMILLL 181

Query: 85  EETKRHNLEHLFSATDKEGNS-ILHLAALN-KLIVVKIL 121
           +     +        +       + LA  N  + +++ L
Sbjct: 182 D--YMTSTN----TNNSLLFIPDIKLAIDNKDIEMLQAL 214

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 36.6 bits (86), Expect = 6e-04
 Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 22/102 (21%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESL--------AKLTSNDETALILAVKNSQIDAF 80
           D    TPLH AA +G      E+   + L        AK   N  T L LA +N  ++  
Sbjct: 32  DKNGRTPLHLAARNGH----LEVV--KLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 84

Query: 81  KILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
           K+L+E     ++     A DK G + LHLAA N  L VVK+L
Sbjct: 85  KLLLE--AGADVN----AKDKNGRTPLHLAARNGHLEVVKLL 120

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 19/100 (19%), Positives = 25/100 (25%), Gaps = 20/100 (20%)

Query: 28  EDNGLMTPLHRAAVDGD----------GGVITEIASSESLAKLTSND-----ETALILAV 72
                 T LH A               G  +   A                 E  L LA 
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 73  KNSQIDAFKILMEETKRH-NLEHLFSATDKEGNSILHLAA 111
             +Q      L E   +  +L       D  GN++LH   
Sbjct: 149 CTNQPHIVHYLTENGHKQADLR----RQDSRGNTVLHALV 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.7e-33  Score=170.08  Aligned_cols=121  Identities=26%  Similarity=0.304  Sum_probs=97.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+.||+.|+.++|++|++.|++++  ..|..|+||+|+|+..+..+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gadvn--~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGADVN--ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            467888888888888888888887  7788888888888888888888877 7778888777788888888888888888


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++.
T Consensus        86 v~~Ll~~gad------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~  130 (169)
T 4gpm_A           86 VKLLISKGAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN  130 (169)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            8888887777      6677777888888888877 888888888777654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.8e-33  Score=169.35  Aligned_cols=120  Identities=27%  Similarity=0.342  Sum_probs=112.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..++.+++++|++.|++++  ..|..|+||||+|+..|+.+++++| +.|++++.+|..|+||||+|+..|+.++
T Consensus        41 l~~a~~~~~~~~~~~ll~~gad~~--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~  118 (169)
T 4gpm_A           41 LHHAAENGHKEVVKLLISKGADVN--AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV  118 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchh--hhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            578999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|++.
T Consensus       119 v~~Ll~~gad------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          119 VKLLISKGAD------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            9999999998      7799999999999999999 99999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=3.5e-31  Score=156.41  Aligned_cols=117  Identities=19%  Similarity=0.204  Sum_probs=111.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|++.|+.+++++|++.|.+++  ..|..|.||||+|+..++.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~   95 (136)
T 2jab_A           18 LLEAARAGQDDEVRILMANGADVN--AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI   95 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|
T Consensus        96 v~~Ll~~g~~------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           96 AEVLLKHGAD------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCC------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999998      7799999999999999999 99999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=9.8e-32  Score=158.79  Aligned_cols=118  Identities=14%  Similarity=0.087  Sum_probs=113.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCC-CCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSN-DETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~-~~t~l~~a~~~~~~~   78 (136)
                      ||+|++.|+.+++++|++.|.+++  ..+..|.||||+|+. ++.+++++| ..+++++.+|.. |.||||+|+..++.+
T Consensus        16 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~   92 (136)
T 1d9s_A           16 LATAAARGQVETVRQLLEAGADPN--ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   92 (136)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcC--CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            589999999999999999999998  889999999999999 999999999 999999999998 999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..+ .+++++|+++|++
T Consensus        93 ~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           93 TLVVLHRAGAR------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCCC------CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999998      7799999999999999999 9999999999974

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=2.6e-30  Score=150.25  Aligned_cols=119  Identities=34%  Similarity=0.444  Sum_probs=114.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|++.|+.+++++|++.+.+++  ..+..|.||||+|+..++.+++++| ..+++++.++..|.||||+|+..++.++
T Consensus         6 L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~   83 (126)
T 1n0r_A            6 LHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV   83 (126)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHH
Confidence            589999999999999999999988  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      +++|+++|++      ++.+|..|.||+++|+..| .+++++|+++|++
T Consensus        84 ~~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           84 VKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCC------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999998      7799999999999999999 9999999999974

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=7.3e-30  Score=155.69  Aligned_cols=121  Identities=25%  Similarity=0.316  Sum_probs=114.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+.|++.|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++..|..|.||||+|+..++.++
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   95 (169)
T 2y1l_E           18 LLEAARAGRDDEVRILMANGADVN--AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEI   95 (169)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence            478999999999999999999988  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus        96 ~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  140 (169)
T 2y1l_E           96 VEVLLKNGAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN  140 (169)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999998      7799999999999999999 999999999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=8.5e-31  Score=158.01  Aligned_cols=122  Identities=16%  Similarity=0.059  Sum_probs=111.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCc-HHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDET-ALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t-~l~~a~~~~~~~   78 (136)
                      ||+|++.|+.+++++|++.|.+++  ..+..|.||||+|+ .|+.+++++| ..+++++.+|..|.| |||+|+..|+.+
T Consensus        16 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~   92 (156)
T 1bi7_B           16 LATAAARGRVEEVRALLEAGANPN--APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   92 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTT--CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHH
Confidence            589999999999999999999988  88999999999985 9999999999 999999999999999 999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccch
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSY  131 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~  131 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++...
T Consensus        93 ~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           93 TLVVLHRAGAR------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             HHHHHHHHTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred             HHHHHHHcCCC------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence            99999999998      7799999999999999999 99999999999876543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=1.5e-29  Score=153.87  Aligned_cols=121  Identities=22%  Similarity=0.210  Sum_probs=110.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++| ..+++++..+..|.||||+|+..++.++
T Consensus         7 L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   84 (167)
T 3v31_A            7 VHQLAAQGEMLYLATRIEQENVIN--HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDI   84 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcC--CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            588999999999999999988887  8889999999999999999999999 8899999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus        85 v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           85 VKMLLDCGVD------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             HHHHHHHTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHCCCC------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999988      6788999999999999999 999999999988764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=8e-30  Score=154.26  Aligned_cols=120  Identities=22%  Similarity=0.215  Sum_probs=88.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|++.|+.+++++|++.+.+++  ..+..|.||||+|+. |+.+++++| ..+++++.++..|.||||+|+..++.++
T Consensus         9 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   85 (162)
T 1ihb_A            9 LASAAARGDLEQLTSLLQNNVNVN--AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   85 (162)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTT--CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCcc--ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            466777777777777777777766  667777777777777 777777777 6677777777777777777777777777


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+.++
T Consensus        86 v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  130 (162)
T 1ihb_A           86 LQTLLEFQAD------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV  130 (162)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT
T ss_pred             HHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC
Confidence            7777777766      5577777777777777777 777777777776643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.7e-29  Score=152.80  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=111.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+. |+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| +.+++++.+|..|.||||+|+..++.++
T Consensus        42 L~~A~~-~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  118 (162)
T 1ihb_A           42 LQVMKL-GNPEIARRLLLRGANPD--LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV  118 (162)
T ss_dssp             HHHCCS-SCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHc-CcHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            578888 99999999999999998  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      +++|+++|++.     ++.+|..|.||||+|+..| .+++++|+++|++
T Consensus       119 v~~Ll~~g~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          119 VEFLVKHTASN-----VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHSCCC-----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHccCCC-----CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999872     4689999999999999999 9999999999974

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.6e-29  Score=151.87  Aligned_cols=121  Identities=21%  Similarity=0.158  Sum_probs=112.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|++.|+.+++++|++.|.+.+   .+..|.||||+|+..|+.+++++| +.+++++.++..|.||||+|+..++.++
T Consensus         6 L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   82 (153)
T 1awc_B            6 LLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHH
Confidence            578999999999999999998775   588899999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus        83 v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           83 VEVLLKHGAD------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            9999999988      7799999999999999999 9999999999987643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=7.6e-30  Score=155.84  Aligned_cols=117  Identities=17%  Similarity=0.211  Sum_probs=59.5

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      |+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.+++
T Consensus        41 ~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  118 (172)
T 3v30_A           41 IWASAFGEIETVRFLLEWGADPH--ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV  118 (172)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCch--hhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            44555555555555555554444  4444555555555555555555555 44555555555555555555555555555


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhcc
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      ++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+
T Consensus       119 ~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A          119 EALLARGAD------LTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCC------ccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            555555444      3345555555555555555 555555555544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.1e-29  Score=156.38  Aligned_cols=121  Identities=16%  Similarity=0.063  Sum_probs=107.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        39 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  116 (192)
T 2rfm_A           39 LMVACMLGMENAIDKLVENFDKLE--DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM  116 (192)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhccccc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Confidence            578899999999999999888887  7888899999999999999999998 8888888888889999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus       117 v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  161 (192)
T 2rfm_A          117 SYFLLEHGAN------VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS  161 (192)
T ss_dssp             HHHHHHTTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999998888      6688889999999999998 999999999887654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.2e-29  Score=152.84  Aligned_cols=117  Identities=23%  Similarity=0.262  Sum_probs=111.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| +.+++++.+|..|.||||+|+..++.++
T Consensus        51 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  128 (169)
T 2y1l_E           51 LHLAAFNGHLEIVEVLLKNGADVN--AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEI  128 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      +++|+++|++      ++.+|..|.||+++|+..| .+++++|++.|
T Consensus       129 v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          129 VEVLLKNGAD------VNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHcCCC------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999998      7799999999999999999 99999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=164.08  Aligned_cols=122  Identities=24%  Similarity=0.354  Sum_probs=115.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.+++++  ..+..|.||+|+|+..++.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~~--~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~  167 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL  167 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGG
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCcC--ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            589999999999999999999988  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|+++|++      ++.++..|+||||+|+..| .+++++|+++|+++..
T Consensus       168 v~~Ll~~gad------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          168 VALLLQHGAS------INASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHCCCC------CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            9999999998      7799999999999999999 9999999999987653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.7e-29  Score=162.21  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=113.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccccc--------------CCCCcHHHHHHHcCChhhHHHh-h---cccCccccCC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVED--------------NGLMTPLHRAAVDGDGGVITEI-A---SSESLAKLTS   62 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~g~~~l~~a~~~~~~~~~~~l-~---~~~~~~~~~~   62 (136)
                      ||+|+..|+.+++++|++.|++++  ..+              ..|.||||+|+..|+.+++++| .   .+++++.+|.
T Consensus        97 L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~  174 (260)
T 3jxi_A           97 LHIAIERRCKHYVELLVEKGADVH--AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS  174 (260)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCcC--ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCC
Confidence            689999999999999999999998  777              6899999999999999999999 8   8999999999


Q ss_pred             CCCcHHHHHHHhCC---------HHHHHHHHHHhhhcc-hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           63 NDETALILAVKNSQ---------IDAFKILMEETKRHN-LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        63 ~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .|.||||+|+..++         .+++++|+++|++++ .....+.+|..|+||||+|+..| .+++++|+++|+.+.
T Consensus       175 ~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          175 RGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             TSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence            99999999999888         799999999999832 00001679999999999999999 999999999998654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=5.3e-29  Score=152.10  Aligned_cols=122  Identities=20%  Similarity=0.170  Sum_probs=114.8

Q ss_pred             CchhhhcCChhhhhHhhccCCC-CCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLE-SRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|+..|+.+++++|++.+.. ++  ..+..|.||||+|+..|+.+++++| +.+++++.++..|.||||+|+..++.+
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            6 IHQLAAQGELDQLKEHLRKGDNLVN--KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCSGGGG--CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCccccc--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            5899999999999999999877 55  8899999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus        84 ~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           84 IVGLLLERDVD------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHHHHTTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999999998      7799999999999999999 9999999999987643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=9.1e-29  Score=152.03  Aligned_cols=122  Identities=20%  Similarity=0.244  Sum_probs=107.5

Q ss_pred             CchhhhcCChhhhhHhhccC-CCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLD-LESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.||..|+.+++++|++.+ .+++  ..+..|.||||+|+..|+.+++++| ..+++++.++..|.||||+|+..++.+
T Consensus         9 l~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   86 (179)
T 3f6q_A            9 IFTQCREGNAVAVRLWLDNTENDLN--QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD   86 (179)
T ss_dssp             HHHHHHHTCHHHHHHHHHCTTSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCccccc--ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            47889999999999999874 4555  7888999999999999999999999 889999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++..
T Consensus        87 ~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           87 IVQKLLQYKAD------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            99999999888      6788999999999999999 9999999999887543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=8.6e-29  Score=148.67  Aligned_cols=113  Identities=18%  Similarity=0.191  Sum_probs=108.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        38 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  115 (153)
T 1awc_B           38 LHLAAQYGHFSTTEVLLRAGVSRD--ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV  115 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHH
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKIL  121 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~L  121 (136)
                      +++|+++|++      ++.+|..|.||+|+|+..| .+++++|
T Consensus       116 v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          116 VELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999998      7799999999999999999 9999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.5e-29  Score=153.63  Aligned_cols=122  Identities=20%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             CchhhhcCChhhhhHhhccCC-CCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDL-ESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|++.|+.+++++|++.+. ...  ..+..|.||||+|+..|+.+++++| +.+++++.+|..|.||||+|+..++.+
T Consensus        12 l~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   89 (165)
T 3twr_A           12 LLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE   89 (165)
T ss_dssp             HHHHHHHTCHHHHHHHCCTTTTTCC--CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCCcc--ccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHH
Confidence            578999999999999998543 444  7788899999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus        90 ~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           90 VAELLVKHGAV------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             HHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHhCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            99999999998      7789999999999999999 9999999999987653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=7.2e-29  Score=153.98  Aligned_cols=118  Identities=20%  Similarity=0.106  Sum_probs=113.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..++.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        72 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  149 (192)
T 2rfm_A           72 LIWAVKNNRLGIAEKLLSKGSNVN--TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEI  149 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      +++|+++|++      ++.+|..|.||+++|+..| .+++++|+++|.
T Consensus       150 v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          150 VKKLLELGAD------ISARDLTGLTAEASARIFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCC------CCCcCCCCCCHHHHHHHhCcHHHHHHHHhccC
Confidence            9999999998      7799999999999999999 999999999873

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=9.3e-29  Score=159.46  Aligned_cols=127  Identities=20%  Similarity=0.207  Sum_probs=113.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCC-------------CCcHHHHHHHcCChhhHHHh-h---cccCccccCCC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNG-------------LMTPLHRAAVDGDGGVITEI-A---SSESLAKLTSN   63 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-------------g~~~l~~a~~~~~~~~~~~l-~---~~~~~~~~~~~   63 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..             |.||||+|+..|+.+++++| +   .+++++.+|..
T Consensus        94 L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~  171 (256)
T 2etb_A           94 LHIAIEKRSLQCVKLLVENGADVH--LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSL  171 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCC
Confidence            589999999999999999999998  77765             99999999999999999999 8   99999999999


Q ss_pred             CCcHHHHHHH--hCCHH-------HHHHHHHHhhhcchh-hhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           64 DETALILAVK--NSQID-------AFKILMEETKRHNLE-HLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        64 ~~t~l~~a~~--~~~~~-------~~~~Ll~~~~~~~~~-~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      |.||||+|+.  .++.+       ++++|+++|++++.. .+.+.+|..|+||||+|+..| .+++++|+++|+.+.
T Consensus       172 g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          172 GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            9999999999  77888       999999999993100 000789999999999999999 999999999997654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.6e-28  Score=149.03  Aligned_cols=117  Identities=20%  Similarity=0.187  Sum_probs=110.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        46 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  123 (165)
T 3twr_A           46 LHFAAGYNRVSVVEYLLQHGADVH--AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI  123 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHhcCCCCC--ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      +++|+++|++      ++.+|..|.||+|+|+. + .+++++|+++|+
T Consensus       124 v~~Ll~~ga~------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          124 CKLLLQHGAD------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHHHHcCCC------CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999998      77999999999999877 7 999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=7.6e-29  Score=150.75  Aligned_cols=121  Identities=19%  Similarity=0.242  Sum_probs=114.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        40 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  117 (167)
T 3v31_A           40 LMWAAAHGQIAVVEFLLQNGADPQ--LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC  117 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|.||+++|+..| .+++++|+++++...
T Consensus       118 v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          118 VKMLLESGAD------PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            9999999998      6799999999999999999 999999999986543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.3e-28  Score=160.13  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=112.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccC--------------CCCcHHHHHHHcCChhhHHHh-h---cccCccccCC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDN--------------GLMTPLHRAAVDGDGGVITEI-A---SSESLAKLTS   62 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--------------~g~~~l~~a~~~~~~~~~~~l-~---~~~~~~~~~~   62 (136)
                      ||+|+..|+.+++++|++.|++++  ..+.              .|.||||+|+..|+.+++++| +   .+++++.+|.
T Consensus       105 L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~  182 (273)
T 2pnn_A          105 LHIAIERRNMTLVTLLVENGADVQ--AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS  182 (273)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcC--ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCC
Confidence            689999999999999999999998  7776              799999999999999999999 8   8999999999


Q ss_pred             CCCcHHHHHHHhCC---------HHHHHHHHHHhhhcc-hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           63 NDETALILAVKNSQ---------IDAFKILMEETKRHN-LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        63 ~~~t~l~~a~~~~~---------~~~~~~Ll~~~~~~~-~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .|.||||+|+..++         .+++++|+++|++++ ....++.+|..|+||||+|+..| .+++++|+++|+.+.
T Consensus       183 ~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          183 VGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             TSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             CCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence            99999999999998         799999999999832 00001358999999999999999 999999999999433

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3.4e-29  Score=153.96  Aligned_cols=122  Identities=20%  Similarity=0.127  Sum_probs=116.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        43 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~  120 (179)
T 3f6q_A           43 LHWACREGRSAVVEMLIMRGARIN--VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV  120 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|+++|++      ++.+|..|.||+++|+..+ .+++++|+++|+.+..
T Consensus       121 v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          121 AEDLVANGAL------VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             HHHHHHTTCC------SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHHCCCC------cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            9999999998      7799999999999999999 9999999999988764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=160.41  Aligned_cols=121  Identities=16%  Similarity=0.067  Sum_probs=114.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..|..|+||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        25 L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~  102 (229)
T 2vge_A           25 LLDAALTGELEVVQQAVKEMNDPS--QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVI  102 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            588999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccc-cCCChHHHHH--HhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATD-KEGNSILHLA--ALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~-~~~~t~l~~a--~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.++ ..|+||||+|  +..| .+++++|+++|+++.
T Consensus       103 v~~Ll~~ga~------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~  150 (229)
T 2vge_A          103 CMALVQHGAA------IFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG  150 (229)
T ss_dssp             HHHHHTTTCC------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCC------cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc
Confidence            9999999998      66876 6999999999  8999 999999999998654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=1e-29  Score=150.20  Aligned_cols=120  Identities=20%  Similarity=0.203  Sum_probs=107.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        14 L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   91 (137)
T 3c5r_A           14 LHIASIKGDIPSVEYLLQNGSDPN--VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI   91 (137)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999988  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++.+|..|.||+++|+..+ .+++++|.+.+..+
T Consensus        92 v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~  135 (137)
T 3c5r_A           92 VKLLLSYGAS------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS  135 (137)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred             HHHHHHcCCC------CCCCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence            9999999998      7799999999999999999 99999888877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4.3e-28  Score=145.86  Aligned_cols=115  Identities=20%  Similarity=0.191  Sum_probs=90.8

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|+..|+.+++++|++. +.+++  ..+..|.||||+ +..|+.+++++| +.+++++.+|..|.||||+|+..|+.+
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            6 LSGAAARGDVQEVRRLLHRELVHPD--ALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTT--CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHhCCHHHHHHHHHhhCcCcc--ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            4678888888888888877 22444  777788888888 778888888888 778888888888888888888888888


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR  124 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~  124 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++
T Consensus        83 ~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           83 TLKVLVEHGAD------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             HHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHcCCC------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            88888888777      6677888888888888888 8888888877

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=8.4e-28  Score=152.71  Aligned_cols=120  Identities=23%  Similarity=0.212  Sum_probs=71.4

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      |+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..++.+++++| ..+++++.++..|.||||+|+..|+.+++
T Consensus        78 ~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  155 (231)
T 3aji_A           78 HIAASAGXDEIVKALLVKGAHVN--AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV  155 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            45555555555555555555554  4455555555555555555555555 55555555555555555555555555555


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++.
T Consensus       156 ~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  199 (231)
T 3aji_A          156 HILLFYKAS------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY  199 (231)
T ss_dssp             HHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHhcCCC------ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC
Confidence            555555555      5566777777777777777 777777777776553

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=8.8e-28  Score=151.88  Aligned_cols=118  Identities=19%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             chhhhcCChhhhhHhhccCC-CCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDL-ESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+|+..++.+++++|++.++ +++  ..+..|.||||+|+..++.+++++| ..+++++.++..|.||||+|+..++.++
T Consensus        63 ~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  140 (223)
T 2f8y_A           63 HAAVSADAQGVFQILIRNRATDLD--ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA  140 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHBTTSCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHH
Confidence            44555555555555555443 333  4444555555555555555555555 5455555555555555555555555555


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      +++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|++
T Consensus       141 v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          141 AVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             HHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCC------CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5555555544      3344555555555555555 5555555555543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=8.4e-28  Score=153.36  Aligned_cols=121  Identities=22%  Similarity=0.214  Sum_probs=91.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccC------ccccCCCCCcHHHHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSES------LAKLTSNDETALILAVK   73 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~------~~~~~~~~~t~l~~a~~   73 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+..      ++..+..|.||||+|+.
T Consensus        49 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~  126 (236)
T 1ikn_D           49 LHLAVITNQPEIAEALLGAGCDPE--LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI  126 (236)
T ss_dssp             HHHHHHTTCHHHHHCCCSCCCCSC--CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH
Confidence            467777888888888888777777  7777778888888888888887777 55543      45566677788888888


Q ss_pred             hCCHHHHHHHHHHhhhcchhhhhccccc-CCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           74 NSQIDAFKILMEETKRHNLEHLFSATDK-EGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        74 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .|+.+++++|+++|++      ++.++. .|.||||+|+..| .+++++|+++|+++.
T Consensus       127 ~~~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  178 (236)
T 1ikn_D          127 HGYLGIVELLVSLGAD------VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN  178 (236)
T ss_dssp             TTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC
T ss_pred             cCCHHHHHHHHHcCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8888888888877777      557776 7888888888888 888888888877654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=9.7e-28  Score=152.07  Aligned_cols=121  Identities=19%  Similarity=0.007  Sum_probs=85.8

Q ss_pred             CchhhhcCChhhhhHhhccC--CCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCH
Q 040650            1 MHKALVEGDGEVVHFLGKLD--LESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQI   77 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~   77 (136)
                      ||+|+..|+.+++++|++.|  .+++  ..+..|.||||+|+..|+.+++++| +.+++++.++..|.||||+|+..|+.
T Consensus        76 L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  153 (228)
T 2dzn_A           76 FHIACSVGNLEVVKSLYDRPLKPDLN--KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL  153 (228)
T ss_dssp             HHHHHHHCCHHHHHHHHSSSSCCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCcccc--cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            46677777777777777766  4444  6666777777777777777777777 66777777777777777777777777


Q ss_pred             HHHHHHHHHh-hhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHH-HhccCcc
Q 040650           78 DAFKILMEET-KRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM-LRMLYPV  129 (136)
Q Consensus        78 ~~~~~Ll~~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll-~~g~~~~  129 (136)
                      +++++|++.| ++      ++.+|..|+||||+|+..| .+++++|+ +.|+++.
T Consensus       154 ~~v~~Ll~~g~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          154 KLIELLCGLGKSA------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             HHHHHHHTTTCCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             HHHHHHHhcCccc------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence            7777777776 55      5577777777777777777 77777777 6676554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=8.1e-28  Score=155.01  Aligned_cols=120  Identities=19%  Similarity=0.182  Sum_probs=76.9

Q ss_pred             chhhhcCChhhhhHhhccCC-CCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDL-ESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+|+..|+.+++++|++.+. +++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        95 ~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~  172 (253)
T 1yyh_A           95 HAAVSADAQGVFQILIRNRATDLD--ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA  172 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTSCTT--CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcc--ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            55555555555555555554 444  5555566666666666666666666 6666666666666667777666666666


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus       173 v~~Ll~~ga~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          173 AVVLLKNGAN------KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            6766666666      5566777777777777777 777777777776543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=1.8e-28  Score=142.39  Aligned_cols=106  Identities=18%  Similarity=0.167  Sum_probs=100.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.+.+++  ..+..|+||||+|+..++.+++++| +.+++++.+|..|.||||+|+..++.++
T Consensus        11 l~~A~~~~~~~~v~~ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~   88 (123)
T 3aaa_C           11 FMWALKNGDLDEVKDYVAKGEDVN--RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   88 (123)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcC--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999988  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                      +++|+++|++      ++.+|..|+||+|+|...+
T Consensus        89 v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           89 VKLLLSKGAD------KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHCCCHH
T ss_pred             HHHHHHcCCC------CCCcCCCCCCHHHHhCCHH
Confidence            9999999998      7799999999999995544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=1.1e-27  Score=155.88  Aligned_cols=125  Identities=20%  Similarity=0.162  Sum_probs=112.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCC---------------------------------------------CcccccCCCCcH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLES---------------------------------------------RPVVEDNGLMTP   35 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~---------------------------------------------~~~~~~~~g~~~   35 (136)
                      ||+|+..++.+++++|++.++..                                             +++..+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            58899999999999999977551                                             112678899999


Q ss_pred             HHHHHHcCChhhHHHh-hcccCccccCC-CCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhc
Q 040650           36 LHRAAVDGDGGVITEI-ASSESLAKLTS-NDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN  113 (136)
Q Consensus        36 l~~a~~~~~~~~~~~l-~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~  113 (136)
                      ||+|+..|+.+++++| ..+++++.++. .|.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------PTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC------CcccccCCCCHHHHHHHc
Confidence            9999999999999999 99999999885 499999999999999999999999998      779999999999999999


Q ss_pred             C-HHHHHHHHHhccCccch
Q 040650          114 K-LIVVKILMLRMLYPVSY  131 (136)
Q Consensus       114 ~-~~~~~~Ll~~g~~~~~~  131 (136)
                      | .+++++|+++|+++...
T Consensus       236 ~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          236 PNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             SCHHHHHHHHHTTCCCCCC
T ss_pred             CCcHHHHHHHHcCCCcCcC
Confidence            9 99999999999986543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=1.6e-28  Score=155.54  Aligned_cols=121  Identities=16%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hc-ccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-AS-SESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~-~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|+..|+.+++++|++.|.+++  ..|..|+||||+|+..|+.+++++| .. +++++.+|..|.||||+|+..|+.+
T Consensus        77 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~  154 (222)
T 3ehr_A           77 LHEAAKRGNLSWLRECLDNRVGVN--GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD  154 (222)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccCcHHHHHHHHhCCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            589999999999999999999988  8999999999999999999999999 76 9999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++++|+++|++      ++.+|..|.|||++|+..+ .++++.|++.|+...
T Consensus       155 ~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          155 IVQLLLAKGAR------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHHHHHHHTCC------SCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HHHHHHHcCCC------CccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            99999999998      7799999999999999999 999999999998764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.8e-28  Score=157.00  Aligned_cols=120  Identities=14%  Similarity=0.079  Sum_probs=75.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|+..|+.+++++|++.|++++  ..|..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        41 L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~  118 (239)
T 1ycs_B           41 LLDSSLEGEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV  118 (239)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCC--CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence            355666666666666666666555  5566666666666666666666666 6666666666666666666666666666


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCC-hHHHHH--HhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGN-SILHLA--ALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~-t~l~~a--~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++.++..|. ||+|+|  +..| .+++++|+++|+.+
T Consensus       119 v~~Ll~~ga~------~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~  165 (239)
T 1ycs_B          119 CKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  165 (239)
T ss_dssp             HHHHHHTTCC------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC------cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence            6666666665      445555554 666666  4555 66666666666543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.8e-27  Score=151.33  Aligned_cols=121  Identities=22%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCc-----cccCCCCCcHHHHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESL-----AKLTSNDETALILAVK   73 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~-----~~~~~~~~t~l~~a~~   73 (136)
                      ||+|++.|+.+++++|++. +.+++  ..|..|+||||+|+..|+.+++++| ..++++     +..|..|.||||+|+.
T Consensus         7 L~~A~~~g~~~~v~~Ll~~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~   84 (232)
T 2rfa_A            7 LLLAAKENDVQALSKLLKFEGCEVH--QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI   84 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcc--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHH
Confidence            4778888888888888876 77776  7777788888888888888888877 666655     4556677788888888


Q ss_pred             hCCHHHHHHHHHHhhhcchhhhhccccc-------------CCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           74 NSQIDAFKILMEETKRHNLEHLFSATDK-------------EGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        74 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-------------~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .|+.+++++|+++|++      ++.++.             .|.||||+|+..| .+++++|+++|+++.
T Consensus        85 ~~~~~~v~~Ll~~g~~------~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  148 (232)
T 2rfa_A           85 NQNVNLVRALLARGAS------VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR  148 (232)
T ss_dssp             TTCHHHHHHHHHTTCC------TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cCCHHHHHHHHhCCCC------CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            8888888888877776      334433             6777777777777 777777777776543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=2.8e-27  Score=149.59  Aligned_cols=122  Identities=23%  Similarity=0.230  Sum_probs=114.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hccc-CccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSE-SLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~-~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+. .++..+..|.||||+|+..++.+
T Consensus        29 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  106 (223)
T 2f8y_A           29 LHLAARYSRSDAAKRLLEASADAN--IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG  106 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHH
Confidence            589999999999999999999998  8899999999999999999999999 6665 88888999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++..
T Consensus       107 ~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A          107 MLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHHHTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCC------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999998      7799999999999999999 9999999999987543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=1.8e-27  Score=154.87  Aligned_cols=121  Identities=21%  Similarity=0.237  Sum_probs=82.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccC-----------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSES-----------------------   56 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~-----------------------   56 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..++.                       
T Consensus        49 L~~A~~~g~~~~v~~Ll~~ga~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (282)
T 1oy3_D           49 LHLAAILGEASTVEKLYAAGAGVL--VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA  126 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSS--CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcc
Confidence            466666666777776666666666  6666666777777766676666666 44332                       


Q ss_pred             ------------------------ccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccC-CChHHHHHH
Q 040650           57 ------------------------LAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKE-GNSILHLAA  111 (136)
Q Consensus        57 ------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-~~t~l~~a~  111 (136)
                                              ++.++..|.||||+|+..|+.+++++|+++|++      ++.++.. |+||||+|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~  200 (282)
T 1oy3_D          127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD------LNKPEPTCGRTPLHLAV  200 (282)
T ss_dssp             -----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHH
T ss_pred             hhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCcCHHHHHH
Confidence                                    445556677777777777777777777777766      5566643 777777777


Q ss_pred             hcC-HHHHHHHHHhccCcc
Q 040650          112 LNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       112 ~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ..| .+++++|+++|+++.
T Consensus       201 ~~~~~~~v~~Ll~~gad~~  219 (282)
T 1oy3_D          201 EAQAASVLELLLKAGADPT  219 (282)
T ss_dssp             HTTCHHHHHHHHHTTCCTT
T ss_pred             HcCCHHHHHHHHHcCCCCc
Confidence            777 777777777776654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=2.2e-27  Score=150.78  Aligned_cols=121  Identities=25%  Similarity=0.322  Sum_probs=97.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.++..|.||||+|+..++.++
T Consensus        44 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  121 (231)
T 3aji_A           44 LHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI  121 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHhCCCCC--CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            467888888888888888887777  7777888888888888888888888 7778888778788888888888888888


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.++..|.||||+|+..| .+++++|+++|+.+.
T Consensus       122 ~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  166 (231)
T 3aji_A          122 AVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN  166 (231)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHcCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Confidence            8888888777      5577888888888888888 888888888877554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.7e-27  Score=151.42  Aligned_cols=122  Identities=20%  Similarity=0.193  Sum_probs=111.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC---cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCC-------------C
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR---PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTS-------------N   63 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~-------------~   63 (136)
                      ||+|+..|+.+++++|++.++++.   ....|..|.||||+|+..|+.+++++| +.+++++..+.             .
T Consensus        41 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  120 (232)
T 2rfa_A           41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY  120 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccC
Confidence            589999999999999999988762   015677999999999999999999999 88999888765             7


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHH----HHHHHhccCc
Q 040650           64 DETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVV----KILMLRMLYP  128 (136)
Q Consensus        64 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~----~~Ll~~g~~~  128 (136)
                      |.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..| .+++    ++|+++|+.+
T Consensus       121 g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          121 GEHPLSFAACVGSEEIVRLLIEHGAD------IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             CSSHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            99999999999999999999999998      7799999999999999999 8888    9999999865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=1.2e-27  Score=154.19  Aligned_cols=122  Identities=23%  Similarity=0.230  Sum_probs=114.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hccc-CccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSE-SLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~-~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+. +++.++..|.||||+|+..++.+
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  138 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADAN--IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG  138 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHH
Confidence            589999999999999999999998  8899999999999999999999999 7665 88999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus       139 ~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  185 (253)
T 1yyh_A          139 MLEDLINSHAD------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  185 (253)
T ss_dssp             HHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999998      7799999999999999999 9999999999987643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=1.3e-27  Score=143.71  Aligned_cols=114  Identities=20%  Similarity=0.214  Sum_probs=108.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+ +..|+.+++++|++.|.+++  ..|..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        40 L~~-~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  116 (156)
T 1bd8_A           40 LQV-MMFGSTAIALELLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV  116 (156)
T ss_dssp             HHH-SCTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHH-HHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHH
Confidence            467 88999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR  124 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~  124 (136)
                      +++|++. ++      ++.+|..|.||||+|+..| .+++++|+++
T Consensus       117 v~~Ll~~-~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          117 VSFLAAE-SD------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHTT-SC------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHhc-cC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999988 66      7799999999999999999 9999999975

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.95  E-value=2.9e-27  Score=154.60  Aligned_cols=124  Identities=16%  Similarity=0.095  Sum_probs=113.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC----cccccCCCCcHHHHHHHc---CChhhHHHh-hcccCccccCCCCCcHHHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR----PVVEDNGLMTPLHRAAVD---GDGGVITEI-ASSESLAKLTSNDETALILAV   72 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~~~l~~a~~~---~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~   72 (136)
                      |+.|+..++.+.++.+++.|.+++    ++..+..|.||||+|+..   |+.+++++| ..|++++.+|..|.||||+|+
T Consensus       134 l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~  213 (278)
T 1dcq_A          134 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC  213 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHH
T ss_pred             hhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHH
Confidence            467899999999999999998854    124578899999999999   899999999 999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           73 KNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ..|+.+++++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+....
T Consensus       214 ~~g~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          214 LTDNAECLKLLLRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             HTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             HcCCHHHHHHHHHcCCC------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999      7799999999999999999 9999999999987543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=4e-28  Score=154.86  Aligned_cols=125  Identities=20%  Similarity=0.130  Sum_probs=114.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC----cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCC-CCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR----PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTS-NDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~-~~~t~l~~a~~~   74 (136)
                      ||+|+..|+.+++++|++.+.+..    +...+..|.||||+|+..|+.+++++| ..+++++.++. .|.||||+|+..
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  161 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            589999999999999999886521    136788899999999999999999999 99999999987 999999999999


Q ss_pred             CCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccch
Q 040650           75 SQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVSY  131 (136)
Q Consensus        75 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~~  131 (136)
                      |+.+++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+.+...
T Consensus       162 ~~~~~v~~Ll~~ga~------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~  213 (236)
T 1ikn_D          162 QNPDLVSLLLKCGAD------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM  213 (236)
T ss_dssp             TCHHHHHHHHTTTCC------SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred             CCHHHHHHHHHcCCC------CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhc
Confidence            999999999999998      7799999999999999999 99999999999977643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=3.5e-27  Score=154.87  Aligned_cols=58  Identities=24%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           65 ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        65 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      .||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~g~d------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~  258 (299)
T 1s70_B          200 GTALHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (299)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            3444444444444444444444444      4456666666666666666 66666666666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.8e-27  Score=152.38  Aligned_cols=121  Identities=17%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|++.++.+.++.|+++|.+++   .+..|.||||.|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus         9 L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~   85 (239)
T 1ycs_B            9 LPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI   85 (239)
T ss_dssp             -------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            689999999999999999999987   357889999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus        86 v~~Ll~~ga~------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           86 VKFLVQFGVN------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             HHHHHHHTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce
Confidence            9999999998      7799999999999999999 9999999999987653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=1.1e-27  Score=161.22  Aligned_cols=120  Identities=19%  Similarity=0.140  Sum_probs=114.4

Q ss_pred             CchhhhcC--ChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccC-----ccccCCCCCcHHHHHH
Q 040650            1 MHKALVEG--DGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSES-----LAKLTSNDETALILAV   72 (136)
Q Consensus         1 l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~-----~~~~~~~~~t~l~~a~   72 (136)
                      ||+|+..|  +.+++++|++.|++++  ..|..|.||||+|+..|+.+++++| ..+++     ++.+|..|.||||+|+
T Consensus       142 L~~A~~~g~~~~~~v~~Ll~~ga~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~  219 (364)
T 3ljn_A          142 LHWCVGLGPEYLEMIKILVQLGASPT--AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI  219 (364)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHHTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHH
Confidence            58999999  9999999999999998  8999999999999999999999999 88888     9999999999999999


Q ss_pred             HhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           73 KNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      ..|+.+++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+.+
T Consensus       220 ~~g~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          220 LINWEDVAMRFVEMGID------VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             TTTCHHHHHHHHTTTCC------TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             HcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCch
Confidence            99999999999999999      7799999999999999999 99999999998654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=5.9e-27  Score=148.45  Aligned_cols=121  Identities=24%  Similarity=0.196  Sum_probs=95.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccc-ccCCCCcHHHHHHHcCChhhHHHh-hcc--cCccccCCCCCcHHHHHHHhCC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVV-EDNGLMTPLHRAAVDGDGGVITEI-ASS--ESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~l-~~~--~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      ||+|+..|+.+++++|++.+++.++.. .+..|.||||+|+..|+.+++++| ..+  .+++..+..|.||||+|+..++
T Consensus        40 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  119 (228)
T 2dzn_A           40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW  119 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCC
Confidence            477888888888888888874444224 667788888888888888888888 666  7777777788888888888888


Q ss_pred             HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      .+++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|..
T Consensus       120 ~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  165 (228)
T 2dzn_A          120 FEVSQFLIENGAS------VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS  165 (228)
T ss_dssp             HHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             HhHHHHHHHcCCC------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            8888888888877      6688888888888888888 8888888888833

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=2.7e-27  Score=155.14  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=94.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..  +|.||||+|+..|+.+++++| ..|++++.+|..|.||||+|+..|+.++
T Consensus        35 L~~A~~~g~~~~v~~Ll~~g~~~~--~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~  110 (285)
T 3kea_A           35 SYYAIADNNVRLVCTLLNAGALKN--LL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT  110 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTGGGS--CC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCC--CC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            577888888888888888887776  44  478888888888888888888 7788888888888888888888888888


Q ss_pred             HHHHHHHhhhcchhhhhcccccCC-ChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEG-NSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~-~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.++..| .||||+|+..| .+++++|+++|+...
T Consensus       111 v~~Ll~~ga~------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  156 (285)
T 3kea_A          111 VKLFVKKNWR------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  156 (285)
T ss_dssp             HHHHHHHCGG------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred             HHHHHhcCCC------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence            8888888877      55777777 68888888888 888888888776553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=7.7e-27  Score=145.47  Aligned_cols=119  Identities=21%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh--hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l--~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+|++.|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++|  ..+.+++..+..|.||||+|+..++.++
T Consensus        44 ~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  121 (201)
T 3hra_A           44 NIAVHNNDIEIAKALIDRGADIN--LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN  121 (201)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHH
Confidence            44445555555555555444444  4444445555555555555555444  3333444444445555555555555555


Q ss_pred             HHHHHHHh-hhcchhhhhcccccCCChHHHHHHhcC------HHHHHHHHHhccCc
Q 040650           80 FKILMEET-KRHNLEHLFSATDKEGNSILHLAALNK------LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~------~~~~~~Ll~~g~~~  128 (136)
                      +++|+++| ++      ++.+|..|+||||+|+..+      .+++++|+++|+++
T Consensus       122 v~~Ll~~g~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A          122 VKLLLEDGRED------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             HHHHHHHCCCC------TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCCC------cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC
Confidence            55555444 33      3344555555555555332      34555555555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=8.1e-27  Score=148.65  Aligned_cols=119  Identities=22%  Similarity=0.258  Sum_probs=70.4

Q ss_pred             chhhhcCChhhhhHhhccC-CCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            2 HKALVEGDGEVVHFLGKLD-LESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+|+..|+.+++++|++.+ .+++  ..+..|.||||+|+..++.+++++| ..+++++.++..|.||||+|+..|+.++
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQMDVN--CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcc--cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence            4555555555555555554 3343  4455555555555555555555555 5555555555555666666666666666


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+++
T Consensus       160 ~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          160 AEILLAAKCD------LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHHHHTTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHcCCC------CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            6666655555      4566666666666666666 66666666666654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=5.1e-27  Score=161.29  Aligned_cols=122  Identities=26%  Similarity=0.281  Sum_probs=105.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.+++++  ..+..|.||||+|+..|+.+++++| +.+++++.++..|.||||+|+..|+.++
T Consensus       249 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~  326 (437)
T 1n11_A          249 LHLAAQEGHAEMVALLLSKQANGN--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL  326 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHH
Confidence            477888888888888888888877  7788888888888888888888888 8888888888888899999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus       327 v~~Ll~~gad------~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          327 VKFLLQHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHhcCCC------CCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence            9999988888      6788999999999999999 9999999999987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=6.3e-27  Score=144.40  Aligned_cols=105  Identities=20%  Similarity=0.141  Sum_probs=98.9

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|++.|+.+++++|++ +.+++  ..|..|+||||+|+..|+.+++++| ..+++++.++ ..|.||||+|+..++.+
T Consensus        48 L~~A~~~g~~~~v~~Ll~-~~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~  124 (183)
T 3deo_A           48 WWTAARKADEQALSQLLE-DRDVD--AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  124 (183)
T ss_dssp             HHHHHHTTCHHHHHHHTT-TSCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHh-cCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHH
Confidence            589999999999999999 88888  8999999999999999999999999 9999999988 88999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..+
T Consensus       125 ~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          125 VVEALVELGAD------IEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HHHHHHHHTCC------TTCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHcCCC------CcCCCCCCCCHHHHHHHhc
Confidence            99999999998      7799999999999998763

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=9.7e-27  Score=148.46  Aligned_cols=120  Identities=18%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             chhhhcCChhhhhHhhccCC----CCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHhC
Q 040650            2 HKALVEGDGEVVHFLGKLDL----ESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKNS   75 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~~   75 (136)
                      |+|+..++.+++++|++.+.    +++  ..+..|.||||+|+..|+.+++++| ..+++++..+ ..|.||||+|+..+
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~  161 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLE--ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN  161 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccc--ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence            45555555555555555544    333  4555566666666666666666666 5556665555 55666666666666


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +.+++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|+++.
T Consensus       162 ~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          162 SLSMVQLLLQHGAN------VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             CHHHHHHHHHTTCC------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            66666666666665      5566777777777777777 777777777776543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.5e-28  Score=157.33  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      +|+|+..++.+++++|++.|++++  ..|..|+||||+|+..|+.+++++| +.|++++.++..|.||||+|+..|+.++
T Consensus       123 l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~  200 (269)
T 4b93_B          123 LHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV  200 (269)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHH
Confidence            478899999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC--HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK--LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++.+|..|+||||+|+.++  .++++++.+.++..
T Consensus       201 v~~Ll~~Gad------~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          201 VELLLLHGAS------VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             HHHHHHTTCC------SCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             HHHHHHCCCC------CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence            9999999998      7799999999999999888  57777777766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=6.4e-27  Score=145.82  Aligned_cols=117  Identities=23%  Similarity=0.172  Sum_probs=109.1

Q ss_pred             CchhhhcCChhhhhHhhc-cCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcc-cCccccCCCCCcHHHHHHHhCC-
Q 040650            1 MHKALVEGDGEVVHFLGK-LDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASS-ESLAKLTSNDETALILAVKNSQ-   76 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~-~~~~~~~~~~~t~l~~a~~~~~-   76 (136)
                      ||+|+..|+.+++++|++ .+.+++  ..+..|.||||+|+..|+.+++++| ..+ .+++.+|..|.||||+|+..+. 
T Consensus        76 l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  153 (201)
T 3hra_A           76 YLYAGAQGRTEILAYMLKHATPDLN--KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG  153 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCC
T ss_pred             HHHHHHcCCHHHHHHHHhccCcccc--cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccc
Confidence            589999999999999994 555777  8899999999999999999999999 777 8999999999999999999998 


Q ss_pred             ----HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           77 ----IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        77 ----~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                          .+++++|+++|++      ++.+|..|+||||+|+..| .+++++|+++|
T Consensus       154 ~~~~~~~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          154 NQLYQDIVKLLMENGAD------QSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SHHHHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence                9999999999998      7799999999999999999 99999999887

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=6.3e-27  Score=155.99  Aligned_cols=128  Identities=20%  Similarity=0.146  Sum_probs=110.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC---hhhHHHh-hcc-cCccccCCCCCcHHHHHHH--
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD---GGVITEI-ASS-ESLAKLTSNDETALILAVK--   73 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~---~~~~~~l-~~~-~~~~~~~~~~~t~l~~a~~--   73 (136)
                      ||+|+..|+.+++++|+++|++++  ..|..|+||||+|+..|+   .++++.| ..+ ++++.+|..|.||||+|+.  
T Consensus       135 Lh~Aa~~g~~~~v~~Ll~~Gad~n--~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~  212 (327)
T 1sw6_A          135 LHWLTSIANLELVKHLVKHGSNRL--YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITS  212 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHc
Confidence            689999999999999999999998  899999999999999998   6777777 444 7899999999999999999  


Q ss_pred             --hCCHHHHHHHHHHhhhc--------------------c-------------------hhhhhcccccCCChHHHHHHh
Q 040650           74 --NSQIDAFKILMEETKRH--------------------N-------------------LEHLFSATDKEGNSILHLAAL  112 (136)
Q Consensus        74 --~~~~~~~~~Ll~~~~~~--------------------~-------------------~~~~~~~~~~~~~t~l~~a~~  112 (136)
                        .|+.+++++|++.+...                    +                   ....++.+|..|+||||+|+.
T Consensus       213 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~  292 (327)
T 1sw6_A          213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR  292 (327)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence              89999999999885421                    0                   000277899999999999999


Q ss_pred             cC-HHHHHHHHHhccCccc
Q 040650          113 NK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       113 ~~-~~~~~~Ll~~g~~~~~  130 (136)
                      .| .+++++|+++|+++..
T Consensus       293 ~g~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          293 LGNISIVDALLDYGADPFI  311 (327)
T ss_dssp             HCCHHHHHHHHHTTCCTTC
T ss_pred             cCCHHHHHHHHHcCCCCcc
Confidence            99 9999999999988653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=4.5e-27  Score=155.20  Aligned_cols=119  Identities=17%  Similarity=0.077  Sum_probs=112.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccc------ccCCCCcHHHHHHHc---CChhhHHHh-hcccCccccCCCCCcHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVV------EDNGLMTPLHRAAVD---GDGGVITEI-ASSESLAKLTSNDETALIL   70 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~g~~~l~~a~~~---~~~~~~~~l-~~~~~~~~~~~~~~t~l~~   70 (136)
                      |+.|+..|+.+.++.|++.|.+++  .      .+..|.||||+|+..   ++.+++++| ..+++++.+|..|.||||+
T Consensus       155 L~~A~~~g~~~~v~~ll~~g~d~~--~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          155 LWTAICNRDLLSVLEAFANGQDFG--QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--SCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HhhhhhccCHHHHHHHHhcCCccc--ccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            578999999999999999999887  5      588999999999997   899999999 8999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           71 AVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        71 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      |+..|+.+++++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+.
T Consensus       233 A~~~g~~~~v~~Ll~~gad------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRAL------VGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCC------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            9999999999999999999      7799999999999999999 9999999999875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.3e-26  Score=128.50  Aligned_cols=91  Identities=36%  Similarity=0.472  Sum_probs=85.8

Q ss_pred             CCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHH
Q 040650           31 GLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHL  109 (136)
Q Consensus        31 ~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~  109 (136)
                      +|+||||+|+..|+.+++++| +.+++++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|+||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHL   74 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHH
Confidence            478999999999999999999 99999999999999999999999999999999999998      77999999999999


Q ss_pred             HHhcC-HHHHHHHHHhccC
Q 040650          110 AALNK-LIVVKILMLRMLY  127 (136)
Q Consensus       110 a~~~~-~~~~~~Ll~~g~~  127 (136)
                      |+..| .+++++|+++|++
T Consensus        75 A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           75 AARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHTTCHHHHHHHHHTTCC
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            99999 9999999999974

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.6e-26  Score=150.34  Aligned_cols=121  Identities=19%  Similarity=0.202  Sum_probs=114.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccc-cCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVE-DNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|++.|+.+++++|++.|++++  .. +..|.||||+|+..|+.+++++| +.+++++.++..|.||||+|+..|+.+
T Consensus         9 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   86 (285)
T 1wdy_A            9 LIKAVQNEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK   86 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence            578999999999999999999888  55 78899999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++++|+++|++      ++.+|..|.||||+|+..| .+++++|+++|+.+.
T Consensus        87 ~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  132 (285)
T 1wdy_A           87 LLKLFLSKGAD------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN  132 (285)
T ss_dssp             HHHHHHHTTCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCC------CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc
Confidence            99999999998      7799999999999999999 999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=1.8e-27  Score=153.44  Aligned_cols=122  Identities=21%  Similarity=0.187  Sum_probs=109.8

Q ss_pred             Cchhhhc---CChhhhhHhhccCCCCCc---------ccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCC----
Q 040650            1 MHKALVE---GDGEVVHFLGKLDLESRP---------VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSN----   63 (136)
Q Consensus         1 l~~a~~~---~~~~~~~~ll~~~~~~~~---------~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~----   63 (136)
                      ||+|+..   |+.+++++|++.|++++.         ...|..|.||||+|+..|+.+++++| +.+++++.++..    
T Consensus        47 L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~  126 (256)
T 2etb_A           47 LMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ  126 (256)
T ss_dssp             HHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS
T ss_pred             HHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc
Confidence            5899999   999999999998876650         01236799999999999999999999 999999998876    


Q ss_pred             ---------CCcHHHHHHHhCCHHHHHHHHH---HhhhcchhhhhcccccCCChHHHHHHh--cC-HH-------HHHHH
Q 040650           64 ---------DETALILAVKNSQIDAFKILME---ETKRHNLEHLFSATDKEGNSILHLAAL--NK-LI-------VVKIL  121 (136)
Q Consensus        64 ---------~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~t~l~~a~~--~~-~~-------~~~~L  121 (136)
                               |.||||+|+..|+.+++++|++   +|++      ++.+|..|+||||+|+.  .+ .+       ++++|
T Consensus       127 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~L  200 (256)
T 2etb_A          127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL  200 (256)
T ss_dssp             CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHH
Confidence                     9999999999999999999999   8988      77999999999999998  67 88       99999


Q ss_pred             HHhccCc
Q 040650          122 MLRMLYP  128 (136)
Q Consensus       122 l~~g~~~  128 (136)
                      +++|+++
T Consensus       201 l~~ga~~  207 (256)
T 2etb_A          201 LQMGARL  207 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHcCCCc
Confidence            9999876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=1.6e-26  Score=147.32  Aligned_cols=119  Identities=19%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.++..|.||||+|+..|+.++
T Consensus        15 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   92 (237)
T 3b7b_A           15 LHAAAEAGHVDICHMLVQAGANID--TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV   92 (237)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCcC--ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Confidence            355666666666666666666555  5556666666666666666666666 5566666555566666666666666666


Q ss_pred             HHHHHHHh-hhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           80 FKILMEET-KRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        80 ~~~Ll~~~-~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      +++|++.+ .+      ++..+..|.||||+|+..| .+++++|+++|+.
T Consensus        93 ~~~Ll~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  136 (237)
T 3b7b_A           93 VQYLLSNGQMD------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD  136 (237)
T ss_dssp             HHHHHTTTCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCCC------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            66666555 33      3344555555555555555 5555555555543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=8.4e-27  Score=149.77  Aligned_cols=117  Identities=20%  Similarity=0.155  Sum_probs=108.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|++.|+.+++++|++ +.+++  ..|..|+||||+|+..|+.+++++| ..+++++.++ ..|.||||+|+..|+.+
T Consensus        49 L~~A~~~g~~~~v~~Ll~-~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~  125 (244)
T 3ui2_A           49 WWTAARKADEQALSQLLE-DRDVD--AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  125 (244)
T ss_dssp             HHHHHTTTCHHHHHHTTT-TCCTT--CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHc-CCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            589999999999999999 88888  8999999999999999999999999 9999999988 78999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHH----------------hcC-HHHHHHHHHhcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAA----------------LNK-LIVVKILMLRML  126 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~----------------~~~-~~~~~~Ll~~g~  126 (136)
                      ++++|+++|++      ++.+|..|+||||+|+                ..| .+++++|++++.
T Consensus       126 ~v~~Ll~~ga~------~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          126 VVEALVELGAD------IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHTTCC------TTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHCCCC------CCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            99999999998      7789999999998887                668 999999998754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.7e-26  Score=151.34  Aligned_cols=126  Identities=18%  Similarity=0.167  Sum_probs=83.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus        63 L~~Aa~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~  140 (285)
T 3d9h_A           63 MHEAAIHGHQLSLRNLISQGWAVN--IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC  140 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSC--EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHH
Confidence            466777777777777777776666  6677777777777777777777777 6677777777777777777777777777


Q ss_pred             HHHHHHHhhhcc--------------------------hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHN--------------------------LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~--------------------------~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++.+                          ....++.+|..|+||||+|+..| .+++++|+++|+++
T Consensus       141 v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  216 (285)
T 3d9h_A          141 VNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV  216 (285)
T ss_dssp             HHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence            777776665522                          11124455666666666666666 66666666666544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=4e-27  Score=154.27  Aligned_cols=116  Identities=19%  Similarity=0.135  Sum_probs=82.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCC-CcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSND-ETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~-~t~l~~a~~~~~~~   78 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+++++.++..| .||||+|+..|+.+
T Consensus        66 L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~  143 (285)
T 3kea_A           66 LHQAATLEDTKIVKILLFSGLDDS--QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  143 (285)
T ss_dssp             HHHHTTSSSCHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Confidence            578888888888888888888887  7788888888888888888888888 7788888877777 67777777777777


Q ss_pred             HHHHHHHHhhhcchhhhhccccc-CCChHHHHHHhcC-HHHHHHHHHhcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDK-EGNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~-~~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      ++++|+++|++.        .+. .|.||||+|+..| .+++++|+++|+
T Consensus       144 ~v~~Ll~~g~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  185 (285)
T 3kea_A          144 IVSYFLSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMT  185 (285)
T ss_dssp             HHHHHHTTSCTT--------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcc--------ccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence            777777666542        111 4445555555544 555555554444

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=1.9e-26  Score=149.95  Aligned_cols=122  Identities=23%  Similarity=0.234  Sum_probs=114.8

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCC----hhhHHHh-hcccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGD----GGVITEI-ASSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      ||+|+..|+.+++++|++. +.+++  ..+..|.||||+|+..+.    .+++++| +.+++++.++..|.||||+|+..
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence            5789999999999999987 88888  889999999999999999    8899999 99999999999999999999999


Q ss_pred             CCHHHHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           75 SQIDAFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        75 ~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++.+++++|++ .|++      ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus       230 ~~~~~v~~Ll~~~g~~------~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          230 KHLGLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             TCHHHHHHHHHSSSCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCHHHHHHHHhccCCC------ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            99999999999 7888      7799999999999999999 9999999999988653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=1.7e-26  Score=155.87  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=112.5

Q ss_pred             Cchhhhc-CChhhhhHhhccCCCCCccccc--CCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC
Q 040650            1 MHKALVE-GDGEVVHFLGKLDLESRPVVED--NGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         1 l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~--~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      ||.|+.. ++.+++++|++.|++++  ..+  ..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++
T Consensus       203 L~~Aa~~~g~~~~v~~LL~~Gadvn--~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  280 (368)
T 3jue_A          203 LFRASGHPPSLPTMADALAHGADVN--WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH  280 (368)
T ss_dssp             HHHHTSSSCCHHHHHHHHHTTCCTT--CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHccCCHHHHHHHHHcCCCCC--ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc
Confidence            5789999 99999999999999998  777  8899999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      .+++++|+++|++      ++.+|..|.||||+|+..| .+++++|+..+...
T Consensus       281 ~~~v~~LL~~Gad------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          281 TGLACLFLKRGAD------LGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHCcCC------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            9999999999998      7799999999999999999 99999999988543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=2.8e-26  Score=153.09  Aligned_cols=122  Identities=19%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|++.|+.+.++.++.. +.+++  ..|..|.||||+|+..|+.+++++| +.+++++.+|..|.||||+|+..|+.+
T Consensus        28 L~~A~~~g~~~~v~~ll~~~~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  105 (351)
T 3utm_A           28 LLEAARSGNEEKLMALLTPLNVNCH--ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE  105 (351)
T ss_dssp             HHHHHHHTCHHHHHHHCCTTTTTCC--CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCcc--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHH
Confidence            5789999999999999875 66666  8899999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++++|+++|++      ++..|..|.||||+|+..| .+++++|+++|+.+..
T Consensus       106 iv~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  152 (351)
T 3utm_A          106 VTELLLKHGAC------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL  152 (351)
T ss_dssp             HHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            99999999998      7799999999999999999 9999999999987653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=5.7e-27  Score=152.96  Aligned_cols=117  Identities=21%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             CchhhhcCChhhhhHhhccCC-CCCcccccCC--------------------------------------CCcHHHHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDL-ESRPVVEDNG--------------------------------------LMTPLHRAAV   41 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~--------------------------------------g~~~l~~a~~   41 (136)
                      ||+|+..|+.+++++|++.|+ +++  ..+..                                      |+||||+|+.
T Consensus       115 Lh~A~~~g~~~~v~~Ll~~g~~~~~--~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~  192 (276)
T 4hbd_A          115 LHYSVSHANFPVVQQLLDSGVCKVD--KQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVS  192 (276)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCcCC--CCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            578888888888888888876 554  44544                                      4555555555


Q ss_pred             cCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC-HHHH
Q 040650           42 DGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK-LIVV  118 (136)
Q Consensus        42 ~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~  118 (136)
                      .|+.+++++| ..|++++.+|..|.||||+|+..|+.+++++|++ .|++      ++.+|..|+||||+|+..| .+++
T Consensus       193 ~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad------~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          193 HGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD------ISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC------TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC------CcCcCCCCCCHHHHHHHcCCHHHH
Confidence            5555555555 5555555555555555555555555555555555 4554      4455555555555555555 5555


Q ss_pred             HHHHHhc
Q 040650          119 KILMLRM  125 (136)
Q Consensus       119 ~~Ll~~g  125 (136)
                      ++|++++
T Consensus       267 ~~Ll~~~  273 (276)
T 4hbd_A          267 SMLYSRM  273 (276)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcc
Confidence            5555544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=3.4e-26  Score=149.82  Aligned_cols=120  Identities=23%  Similarity=0.235  Sum_probs=95.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.+.+++  . +..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~  205 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQ--P-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC  205 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSS--C-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCC--C-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            356666777777777777666665  2 33477777777777777777777 7777888888888888888888888888


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      +++|++.|++      ++ .+..|.||||+|+..| .+++++|+++|+++..
T Consensus       206 v~~Ll~~ga~------~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          206 VKKLLESGAD------VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA  250 (285)
T ss_dssp             HHHHHHTTCC------TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHCCCC------CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            8888888887      55 4889999999999999 9999999999987653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=1.5e-27  Score=147.75  Aligned_cols=118  Identities=12%  Similarity=0.111  Sum_probs=103.9

Q ss_pred             CchhhhcCCh----hhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC------hhhHHHh-hcccCccccCCCCC-cHH
Q 040650            1 MHKALVEGDG----EVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD------GGVITEI-ASSESLAKLTSNDE-TAL   68 (136)
Q Consensus         1 l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~------~~~~~~l-~~~~~~~~~~~~~~-t~l   68 (136)
                      ||+|+..++.    +++++|++.|++++  ..+..|+||||+|+..++      .+++++| ..|++++.+|..|. |||
T Consensus        42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn--~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL  119 (186)
T 3t8k_A           42 LYDVLRNNNDEARYKISMFLINKGADIK--SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF  119 (186)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHTTCCSS--CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred             HHHHHHcCCcchHHHHHHHHHHCCCCCC--CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence            5889998875    58999999999998  889999999999999887      4678988 99999999999999 999


Q ss_pred             HHHHHhC-----CHHHHHHHHH-HhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhcc
Q 040650           69 ILAVKNS-----QIDAFKILME-ETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus        69 ~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      |+|+..+     ..+++++|++ +|++      ++.+|..|+||||+|+..| .+++++|++...
T Consensus       120 h~A~~~~~~~~~~~~iv~~Ll~~~gad------~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          120 KNIFNYFVDENEMIPLYKLIFSQSGLQ------LLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             GGGGGCCSCHHHHHHHHHHHHTSTTCC------TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCChhhHHHHHHHHHHhcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999844     3568999999 8998      7799999999999999999 999999987753

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=3.8e-26  Score=145.69  Aligned_cols=122  Identities=25%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             CchhhhcCChhhhhHhhc----cCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhC
Q 040650            1 MHKALVEGDGEVVHFLGK----LDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNS   75 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~   75 (136)
                      ||+|+..|+.+++++|++    .+.+++  ..+..|.||||+|+..|+.+++++| +.+++++.++..|.||||+|+..+
T Consensus        13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   90 (241)
T 1k1a_A           13 LHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR   90 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCC--cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            355566666666555554    444444  5555555666666666666666655 555555555555555555555555


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhcc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRML  126 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~  126 (136)
                      +.+++++|++.++...  ..++..+..|.||||+|+..| .+++++|+++|+
T Consensus        91 ~~~~~~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  140 (241)
T 1k1a_A           91 SPTCLRALLDSAAPGT--LDLEARNYDGLTALHVAVNTECQETVQLLLERGA  140 (241)
T ss_dssp             CHHHHHHHHHHSCTTS--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCcc--ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            5555555555544100  003334444444444444444 444444444443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2.4e-26  Score=157.90  Aligned_cols=120  Identities=23%  Similarity=0.268  Sum_probs=101.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+++++.++..|.||||+|+..|+.++
T Consensus        18 L~~Aa~~g~~~~v~~Ll~~g~~~~--~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~   95 (437)
T 1n11_A           18 LHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   95 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence            578899999999999999888887  7888889999999999999999998 8888888888889999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +++|+++|++      ++..+..|.||||+|+..| .+++++|+++++..
T Consensus        96 v~~Ll~~ga~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  139 (437)
T 1n11_A           96 VKLLLENNAN------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ  139 (437)
T ss_dssp             HHHHHHHTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHhCCCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            9999998887      5577777777777777777 77777777776654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=151.38  Aligned_cols=84  Identities=23%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-h-cccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-A-SSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~-~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|+..|+.+++++|++.|++++  ..|..|+||||+|+..|+.+++++| . .+++++.+|..|.||||+|+..|+.+
T Consensus       187 Lh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~  264 (276)
T 4hbd_A          187 LMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSE  264 (276)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHH
Confidence            466777777777777777777776  6677777777777777777777777 5 67777777777777777777777777


Q ss_pred             HHHHHHHH
Q 040650           79 AFKILMEE   86 (136)
Q Consensus        79 ~~~~Ll~~   86 (136)
                      ++++|+++
T Consensus       265 iv~~Ll~~  272 (276)
T 4hbd_A          265 IASMLYSR  272 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            77777765

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=9.4e-26  Score=150.51  Aligned_cols=87  Identities=18%  Similarity=0.229  Sum_probs=71.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+++++..+..|.||||+|+..|+.++
T Consensus        62 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  139 (351)
T 3utm_A           62 LHLAAGYNRVRIVQLLLQHGADVH--AKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV  139 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            577888888888888888888777  7788888888888888888888888 7788888888888888888888888888


Q ss_pred             HHHHHHHhhh
Q 040650           80 FKILMEETKR   89 (136)
Q Consensus        80 ~~~Ll~~~~~   89 (136)
                      +++|+++|++
T Consensus       140 v~~Ll~~g~~  149 (351)
T 3utm_A          140 CSLLLSHGAD  149 (351)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            8888877654

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=5.6e-26  Score=153.00  Aligned_cols=119  Identities=20%  Similarity=0.139  Sum_probs=84.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccc--------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAK--------------------   59 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~--------------------   59 (136)
                      ||+|+..|+.+++++|++.|.+++  ..|..|.||||+|+..|+.+++++| ..+++++.                    
T Consensus        24 L~~Aa~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~  101 (364)
T 3ljn_A           24 IHVAARKGQTDEVRRLIETGVSPT--IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVV  101 (364)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHH
Confidence            467777777777777777777776  6777777777777777777777777 55554433                    


Q ss_pred             --------------------------------cCCCCCcHHHHHHHhC--CHHHHHHHHHHhhhcchhhhhcccccCCCh
Q 040650           60 --------------------------------LTSNDETALILAVKNS--QIDAFKILMEETKRHNLEHLFSATDKEGNS  105 (136)
Q Consensus        60 --------------------------------~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t  105 (136)
                                                      .+..|.||||+|+..|  +.+++++|+++|++      ++.+|..|+|
T Consensus       102 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~------~~~~d~~g~t  175 (364)
T 3ljn_A          102 ALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS------PTAKDKADET  175 (364)
T ss_dssp             HHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC------TTCCCTTSCC
T ss_pred             HHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC------CcccCCCCCC
Confidence                                            4455677777777777  77777777777766      5567777777


Q ss_pred             HHHHHHhcC-HHHHHHHHHhccC
Q 040650          106 ILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus       106 ~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      |||+|+..| .+++++|+++|+.
T Consensus       176 ~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          176 PLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccc
Confidence            777777777 7777777777665

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=2.4e-26  Score=150.90  Aligned_cols=121  Identities=17%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.||..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..|++++.+|..|.||||+|+..|+.++
T Consensus        44 l~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~  121 (299)
T 1s70_B           44 FLAACSSGDTEEVLRLLERGADIN--YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI  121 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTT--CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Confidence            578999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      +++|+++|++      ++.+|..|.||||+|+..+ .++++.++.....+.
T Consensus       122 v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~  166 (299)
T 1s70_B          122 AEYLISQGAH------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI  166 (299)
T ss_dssp             HHHHHHTTCC------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhCCCC------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCc
Confidence            9999999998      6799999999999999999 999998887655443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=3.5e-25  Score=140.88  Aligned_cols=121  Identities=24%  Similarity=0.174  Sum_probs=108.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC-CCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT-SNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~-~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|+..|+.+++++|++.|.+++  ..+..|.||||+|+..|+.+++++| ..+.+++..+ ..|.||||+|+..++.+
T Consensus        13 l~~A~~~g~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~   90 (240)
T 3eu9_A           13 IVKATQYGIYERCRELVEAGYDVR--QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS   90 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred             HHHHHHcCChHHHHHHHHcCCCcC--CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence            578999999999999999998888  8889999999999999999999999 8888777554 45899999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++++|++.|++      ++.++..|.||||+|+..| .+++++|+++|+.+.
T Consensus        91 ~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~  136 (240)
T 3eu9_A           91 MVVQLMKYGAD------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD  136 (240)
T ss_dssp             HHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCC------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc
Confidence            99999999988      6688999999999999999 999999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=9.1e-26  Score=152.71  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=108.6

Q ss_pred             CchhhhcC---ChhhhhHhhccCCCCCc------ccccCCCCcHHHHHHHcCChhhHHHh-hc-ccCccccCCCCCcHHH
Q 040650            1 MHKALVEG---DGEVVHFLGKLDLESRP------VVEDNGLMTPLHRAAVDGDGGVITEI-AS-SESLAKLTSNDETALI   69 (136)
Q Consensus         1 l~~a~~~~---~~~~~~~ll~~~~~~~~------~~~~~~g~~~l~~a~~~~~~~~~~~l-~~-~~~~~~~~~~~~t~l~   69 (136)
                      ||+|+..+   +.+++++|++.|.+++.      ...+..|.||||+|+..|+.+++++| .. +++++.+|..|.||||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~  318 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  318 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence            47888887   89999999999988761      12567899999999999999999999 55 4999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           70 LAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        70 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      +|+..|+.+++++|+++|++      ++.+|..|.|||++|+..| .+++++|+++++.
T Consensus       319 ~A~~~g~~~iv~~Ll~~gad------~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          319 LAAQEGRIEVVMYLIQQGAS------VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHcCCHHHHHHHHHcCCC------ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999999999999999998      7799999999999999999 9999999999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=3.2e-26  Score=147.81  Aligned_cols=122  Identities=18%  Similarity=0.143  Sum_probs=106.9

Q ss_pred             Cchhh---hcCChhhhhHhhccCCCCC---------cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC------
Q 040650            1 MHKAL---VEGDGEVVHFLGKLDLESR---------PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT------   61 (136)
Q Consensus         1 l~~a~---~~~~~~~~~~ll~~~~~~~---------~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~------   61 (136)
                      ||+|+   +.|+.+++++|++.|++..         ....|..|+||||+|+..|+.+++++| +.+++++.++      
T Consensus        50 L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~  129 (260)
T 3jxi_A           50 LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ  129 (260)
T ss_dssp             HHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCS
T ss_pred             HHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccC
Confidence            57777   7899999999999875421         124556899999999999999999999 9999999988      


Q ss_pred             --------CCCCcHHHHHHHhCCHHHHHHHHH---HhhhcchhhhhcccccCCChHHHHHHhcC----------HHHHHH
Q 040650           62 --------SNDETALILAVKNSQIDAFKILME---ETKRHNLEHLFSATDKEGNSILHLAALNK----------LIVVKI  120 (136)
Q Consensus        62 --------~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~t~l~~a~~~~----------~~~~~~  120 (136)
                              ..|.||||+|+..|+.+++++|++   +|++      ++.+|..|+||||+|+..+          .+++++
T Consensus       130 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~  203 (260)
T 3jxi_A          130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL  203 (260)
T ss_dssp             SSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHH
Confidence                    689999999999999999999999   8888      7799999999999999654          289999


Q ss_pred             HHHhccCc
Q 040650          121 LMLRMLYP  128 (136)
Q Consensus       121 Ll~~g~~~  128 (136)
                      |+++|+++
T Consensus       204 Ll~~ga~~  211 (260)
T 3jxi_A          204 LLIKCAKL  211 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhCccc
Confidence            99999865

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=5.6e-26  Score=147.75  Aligned_cols=122  Identities=19%  Similarity=0.202  Sum_probs=107.8

Q ss_pred             Cchhhhc---CChhhhhHhhccCCCC-------C--cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCC-----
Q 040650            1 MHKALVE---GDGEVVHFLGKLDLES-------R--PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTS-----   62 (136)
Q Consensus         1 l~~a~~~---~~~~~~~~ll~~~~~~-------~--~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~-----   62 (136)
                      ||+|+..   |+.+++++|++.|++.       +  ....|..|.||||+|+..|+.+++++| +.+++++.++.     
T Consensus        58 L~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~  137 (273)
T 2pnn_A           58 LLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK  137 (273)
T ss_dssp             HHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS
T ss_pred             HHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc
Confidence            5889976   9999999999987653       2  012567899999999999999999999 99999999886     


Q ss_pred             ---------CCCcHHHHHHHhCCHHHHHHHHH---HhhhcchhhhhcccccCCChHHHHHHhcC----------HHHHHH
Q 040650           63 ---------NDETALILAVKNSQIDAFKILME---ETKRHNLEHLFSATDKEGNSILHLAALNK----------LIVVKI  120 (136)
Q Consensus        63 ---------~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~t~l~~a~~~~----------~~~~~~  120 (136)
                               .|.||||+|+..|+.+++++|++   +|++      ++.+|..|+||||+|+..|          .+++++
T Consensus       138 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~  211 (273)
T 2pnn_A          138 KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE  211 (273)
T ss_dssp             SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHH
Confidence                     79999999999999999999999   8888      7799999999999999866          379999


Q ss_pred             HHHhccCc
Q 040650          121 LMLRMLYP  128 (136)
Q Consensus       121 Ll~~g~~~  128 (136)
                      |+++|+++
T Consensus       212 Ll~~ga~~  219 (273)
T 2pnn_A          212 ILILGAKL  219 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhhhc
Confidence            99999765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=5.2e-25  Score=140.09  Aligned_cols=118  Identities=24%  Similarity=0.199  Sum_probs=70.0

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCC-hhhHHHh-hcccCccccCC-CCCcHHHHHHHhCCHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGD-GGVITEI-ASSESLAKLTS-NDETALILAVKNSQID   78 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~-~~~~~~l-~~~~~~~~~~~-~~~t~l~~a~~~~~~~   78 (136)
                      |+|+..++.+++++|++.|.+++  ..+..|.||||+|+..+. .+++++| ..+++++..+. .|.||||+|+..++.+
T Consensus       114 ~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  191 (240)
T 3eu9_A          114 HLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT  191 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH
Confidence            45555555555555555555554  555555555555554333 4555555 55555555554 5666666666666666


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccC
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      ++++|+++|++      ++.+|..|.||+++|+..| .+++++|++.++.
T Consensus       192 ~v~~Ll~~g~~------~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          192 VISLLLEAGAN------VDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHHHHHTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            66666666666      4566666666666666666 6666666666654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.8e-25  Score=148.25  Aligned_cols=120  Identities=23%  Similarity=0.256  Sum_probs=79.1

Q ss_pred             CchhhhcCChhhhhHhhc-cCCCCCcccccCCCCcHHHHHHHcCC----hhhHHHh-hcccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGK-LDLESRPVVEDNGLMTPLHRAAVDGD----GGVITEI-ASSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~g~~~l~~a~~~~~----~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      ||+|+..|+.+++++|++ .|.+++  ..+..|.++++.++..+.    .+++++| ..|++++.+|..|.||||+|+..
T Consensus       172 L~~A~~~g~~~~v~~LL~~~gad~n--~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~  249 (337)
T 4g8k_A          172 LMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK  249 (337)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSCCCTT--CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHhccCCCcC--ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence            467788888888888875 466666  666666676666555433    2355555 66666666666666777777777


Q ss_pred             CCHHHHHHHHHH-hhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           75 SQIDAFKILMEE-TKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        75 ~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      ++.+++++|+.. |++      ++.+|..|+||||+|+..| .+++++|+++|+++
T Consensus       250 ~~~~~v~~Ll~~~~~~------vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~  299 (337)
T 4g8k_A          250 KHLGLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGAST  299 (337)
T ss_dssp             TCHHHHHHHHTSTTCC------TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS
T ss_pred             hhhHHHHHHHHhcCCc------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            766666666653 444      5566666677777776666 66667776666654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=3.6e-25  Score=149.76  Aligned_cols=127  Identities=23%  Similarity=0.301  Sum_probs=74.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcc---cCccccCCCCCcHHHHHHHhC-
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASS---ESLAKLTSNDETALILAVKNS-   75 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~---~~~~~~~~~~~t~l~~a~~~~-   75 (136)
                      ||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++| ..+   .+++..|..|.||||+|+..+ 
T Consensus       170 L~~A~~~g~~~iv~~Ll~~ga~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~  247 (373)
T 2fo1_E          170 LMLAVLARRRRLVAYLMKAGADPT--IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG  247 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS
T ss_pred             HHHHHHcChHHHHHHHHHCCCCCc--ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCC
Confidence            466666666666666666666665  5566666666666666666666665 433   444444555555555555444 


Q ss_pred             --CHHHHHHHHHHhhhcc-----------------------------------h-hhhhcccccCCChHHHHHHhcC-HH
Q 040650           76 --QIDAFKILMEETKRHN-----------------------------------L-EHLFSATDKEGNSILHLAALNK-LI  116 (136)
Q Consensus        76 --~~~~~~~Ll~~~~~~~-----------------------------------~-~~~~~~~~~~~~t~l~~a~~~~-~~  116 (136)
                        +.+++++|+++|++++                                   . ...++.+|..|+||||+|+..| .+
T Consensus       248 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~  327 (373)
T 2fo1_E          248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE  327 (373)
T ss_dssp             TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHH
Confidence              4444455544444321                                   0 0115566777777777777777 77


Q ss_pred             HHHHHHHhccCcc
Q 040650          117 VVKILMLRMLYPV  129 (136)
Q Consensus       117 ~~~~Ll~~g~~~~  129 (136)
                      ++++|+++|+++.
T Consensus       328 iv~~Ll~~gad~~  340 (373)
T 2fo1_E          328 VVMYLIQQGASVE  340 (373)
T ss_dssp             HHHHHHHTTCCSS
T ss_pred             HHHHHHHcCCCcc
Confidence            7777777776543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2.4e-24  Score=126.99  Aligned_cols=98  Identities=20%  Similarity=0.182  Sum_probs=92.5

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCCh
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNS  105 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t  105 (136)
                      ..|..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|+|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t   78 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL------VNTTGYQNDS   78 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCGGGCC
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc------ccCcCCCCCC
Confidence            4688999999999999999999999 99999999999999999999999999999999999998      7799999999


Q ss_pred             HHHHHHhcC-HHHHHHHHHhccCccc
Q 040650          106 ILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       106 ~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      |||+|+..| .+++++|+++|+++..
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            999999999 9999999999987643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=3.4e-25  Score=136.60  Aligned_cols=121  Identities=18%  Similarity=0.160  Sum_probs=105.5

Q ss_pred             hhhhcCChhhhhHhhccCCCCCc---------ccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHH
Q 040650            3 KALVEGDGEVVHFLGKLDLESRP---------VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAV   72 (136)
Q Consensus         3 ~a~~~~~~~~~~~ll~~~~~~~~---------~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~   72 (136)
                      .|++.+..+++++|++.+....+         ...+..|.||||+|+..|+.++++.| . +.+++.+|..|.||||+|+
T Consensus         6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~   84 (183)
T 3deo_A            6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVA   84 (183)
T ss_dssp             EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHH
T ss_pred             HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHH
Confidence            57788899999999975433320         01245789999999999999999999 8 9999999999999999999


Q ss_pred             HhCCHHHHHHHHHHhhhcchhhhhcccc-cCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           73 KNSQIDAFKILMEETKRHNLEHLFSATD-KEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        73 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ..|+.+++++|+++|++      ++.++ ..|+||||+|+..| .+++++|+++|+++..
T Consensus        85 ~~~~~~~v~~Ll~~ga~------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  138 (183)
T 3deo_A           85 GLGSDKCVRLLAEAGAD------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV  138 (183)
T ss_dssp             HHTCHHHHHHHHHTTCC------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             HcCCHHHHHHHHHcCCC------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC
Confidence            99999999999999998      66888 89999999999999 9999999999987653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=1.7e-24  Score=127.61  Aligned_cols=101  Identities=12%  Similarity=0.032  Sum_probs=94.1

Q ss_pred             CCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhccc
Q 040650           21 LESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSAT   99 (136)
Q Consensus        21 ~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~   99 (136)
                      ++++  ..+..|.||||+|+..|+.+++++| +.+++++.+|..|.||||+|+. ++.+++++|+++|++      ++.+
T Consensus         3 ~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------~~~~   73 (136)
T 1d9s_A            3 PGIH--MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE------PNCA   73 (136)
T ss_dssp             CCCS--CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC------SSCC
T ss_pred             CCcc--CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC------CCCc
Confidence            4455  8899999999999999999999999 8899999999999999999999 999999999999998      7799


Q ss_pred             ccC-CChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650          100 DKE-GNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       100 ~~~-~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      |.. |+||||+|+..| .+++++|+++|+++..
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  106 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDV  106 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            999 999999999999 9999999999987543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=4.7e-24  Score=142.31  Aligned_cols=121  Identities=20%  Similarity=0.206  Sum_probs=113.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccC-CCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDN-GLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||.|++.|+.++|++|+++|++++  ..+. .|+||||+|+..|+.+++++| +.|++++.++..+.+|++.++..+...
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn--~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  106 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVK  106 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccch
Confidence            588999999999999999999998  6664 599999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++..++..+++      ++.+|..|.||+|+|+..| .+++++|+++|+.+.
T Consensus       107 ~~~~~~~~~~~------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~  152 (337)
T 4g8k_A          107 LLKLFLSKGAD------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN  152 (337)
T ss_dssp             HHHHHHTTTCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhHHhhhccch------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcc
Confidence            99999999888      7799999999999999999 999999999998653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=2.1e-25  Score=138.08  Aligned_cols=120  Identities=12%  Similarity=0.019  Sum_probs=105.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCccccc-CCCCcHHHHHHHcCCh----hhHHHh-hcccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVED-NGLMTPLHRAAVDGDG----GVITEI-ASSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~~~l~~a~~~~~~----~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      |+.|++.|+.+.++.+++.+.  +  ..+ ..|+||||+|+..++.    +++++| ..|++++.+|..|+||||+|+..
T Consensus        10 l~~Aa~~g~~~~~~~l~~~~~--~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~   85 (186)
T 3t8k_A           10 VSAAAMLGTYEDFLELFEKGY--E--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG   85 (186)
T ss_dssp             HHHHHHHSCHHHHHHHHHHSS--S--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCc--c--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            468999999999999998764  3  344 7899999999999975    489999 99999999999999999999999


Q ss_pred             CC------HHHHHHHHHHhhhcchhhhhcccccCCC-hHHHHHHhcC------HHHHHHHHH-hccCccc
Q 040650           75 SQ------IDAFKILMEETKRHNLEHLFSATDKEGN-SILHLAALNK------LIVVKILML-RMLYPVS  130 (136)
Q Consensus        75 ~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~-t~l~~a~~~~------~~~~~~Ll~-~g~~~~~  130 (136)
                      ++      .+++++|+++|++      ++.+|..|+ ||||+|+..+      .+++++|++ +|+++..
T Consensus        86 ~~~~~~~~~~iv~~Ll~~Gad------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~  149 (186)
T 3t8k_A           86 GGNDITGTTELCKIFLEKGAD------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI  149 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCC------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC
T ss_pred             CCcchhhHHHHHHHHHHCCCC------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc
Confidence            87      5789999999999      779999999 9999999843      469999999 8887653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=1.3e-24  Score=124.62  Aligned_cols=99  Identities=26%  Similarity=0.321  Sum_probs=91.4

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCCh
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNS  105 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t  105 (136)
                      ..|..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~d~~g~t   77 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD------VNARSKDGNT   77 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC------TTCCCTTCCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCCC
Confidence            4688999999999999999999999 88999999999999999999999999999999999988      7799999999


Q ss_pred             HHHHHHhcC-HHHHHHHHHhccCccch
Q 040650          106 ILHLAALNK-LIVVKILMLRMLYPVSY  131 (136)
Q Consensus       106 ~l~~a~~~~-~~~~~~Ll~~g~~~~~~  131 (136)
                      |||+|+..| .+++++|+++|+++...
T Consensus        78 pl~~A~~~~~~~~~~~Ll~~ga~~n~~  104 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDAKGADVNAR  104 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTSSSHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCcC
Confidence            999999999 99999999999876543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=4.5e-24  Score=135.97  Aligned_cols=112  Identities=16%  Similarity=0.119  Sum_probs=93.1

Q ss_pred             hhHhhccCCCCC-cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhc
Q 040650           13 VHFLGKLDLESR-PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRH   90 (136)
Q Consensus        13 ~~~ll~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~   90 (136)
                      ++.|++.+.+++ .+..+..+.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.+++++|+++|++ 
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence            467888887776 123345667889999999999999999 99999999999999999999999999999999999998 


Q ss_pred             chhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           91 NLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        91 ~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                           ++.+|..|+||||+|+..| .+++++|+++|+++..
T Consensus        80 -----~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~  115 (229)
T 2vge_A           80 -----VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA  115 (229)
T ss_dssp             -----TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC
T ss_pred             -----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence                 7799999999999999999 9999999999987654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=5.2e-24  Score=117.89  Aligned_cols=87  Identities=29%  Similarity=0.379  Sum_probs=83.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..|..|.||||+|+..|+.+++++| +.+++++.+|..|.||||+|+..++.++
T Consensus         6 L~~A~~~~~~~~v~~Ll~~g~~~n--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~   83 (93)
T 1n0q_A            6 LHLAARNGHLEVVKLLLEAGADVN--AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV   83 (93)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence            589999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 040650           80 FKILMEETKR   89 (136)
Q Consensus        80 ~~~Ll~~~~~   89 (136)
                      +++|+++|++
T Consensus        84 ~~~Ll~~ga~   93 (93)
T 1n0q_A           84 VKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999998863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=8.2e-24  Score=122.65  Aligned_cols=97  Identities=18%  Similarity=0.163  Sum_probs=88.5

Q ss_pred             ccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChH
Q 040650           28 EDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSI  106 (136)
Q Consensus        28 ~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~  106 (136)
                      .+..|.+|||+|+..|+.+++++| ..+.+++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|+||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~tp   76 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHITP   76 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC------TTCCCTTSCCH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCH
Confidence            356788999999999999999999 99999999999999999999999999999999999988      77999999999


Q ss_pred             HHHHHhcC-HHHHHHHHHhccCccc
Q 040650          107 LHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       107 l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ||+|+..| .+++++|+++|+++..
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~~~  101 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADKTV  101 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999 9999999999987653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=1.3e-23  Score=139.97  Aligned_cols=117  Identities=18%  Similarity=0.165  Sum_probs=105.2

Q ss_pred             chhhhcCChhhhhHhhccCCCCCccc-ccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC---
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVV-EDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ---   76 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~---   76 (136)
                      |.|+..+..++++.|++.|.+++  . .|..|.||||+|+..|+.+++++| +.|++++.+|..|.||||+|+..|+   
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn--~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~  179 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLN--IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD  179 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSC--SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHH
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcc--cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccccc
Confidence            56677777889999999999998  7 799999999999999999999999 9999999999999999999999998   


Q ss_pred             HHHHHHHHHHh-hhcchhhhhcccccCCChHHHHHHh----cC-HHHHHHHHHhcc
Q 040650           77 IDAFKILMEET-KRHNLEHLFSATDKEGNSILHLAAL----NK-LIVVKILMLRML  126 (136)
Q Consensus        77 ~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~t~l~~a~~----~~-~~~~~~Ll~~g~  126 (136)
                      .++++.|++.+ ++      ++.+|..|+||||+|+.    .| .+++++|++.++
T Consensus       180 ~~~~~~ll~~~~~~------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~  229 (327)
T 1sw6_A          180 SGTFEALLDYLYPC------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM  229 (327)
T ss_dssp             TTCHHHHHHHHGGG------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcc------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHH
Confidence            67888888886 55      77999999999999998    88 999999998853

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=6.2e-24  Score=121.78  Aligned_cols=99  Identities=22%  Similarity=0.240  Sum_probs=92.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.+.+++  ..|..|.||||+|+..++.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        13 L~~A~~~~~~~~~~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~   90 (115)
T 2l6b_A           13 LHNAAKNGHAEEVKKLLSKGADVN--ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI   90 (115)
T ss_dssp             HHHHHHHTCHHHHHHHTTTTCCSS--CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHH
Confidence            589999999999999999999988  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHH
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSIL  107 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l  107 (136)
                      +++|+++|++      ++.++..+.+|-
T Consensus        91 ~~~Ll~~ga~------~n~~~~~~~~~~  112 (115)
T 2l6b_A           91 VKLLDAKGAD------VNARSWGSSHHH  112 (115)
T ss_dssp             HHHHHTTSSS------HHHHSCCCC---
T ss_pred             HHHHHHcCCC------CCcCCccccccc
Confidence            9999999999      778999998884

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=5.5e-25  Score=148.97  Aligned_cols=119  Identities=18%  Similarity=0.106  Sum_probs=97.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC-cccccCCCCcHHHHHHHcCChhhHHHh-hcccC---ccccCCCCCcHHHHHHHhC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR-PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSES---LAKLTSNDETALILAVKNS   75 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~---~~~~~~~~~t~l~~a~~~~   75 (136)
                      ||+|++.|+.+++++|++.|.+.. ....+..|.||||+|+..|+.+++++| +.+++   .+..+.. .||||+|+..|
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G  174 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG  174 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence            589999999999999999987331 013445678999999999999999999 88864   2222223 89999999999


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcc--cccCCChHHHHHH-hcC-HHHHHHHHHhcc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSA--TDKEGNSILHLAA-LNK-LIVVKILMLRML  126 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~--~~~~~~t~l~~a~-~~~-~~~~~~Ll~~g~  126 (136)
                      +.+++++|+++|++      ++.  .|..|.||||+|+ ..| .+++++|+++|+
T Consensus       175 ~~eiv~~Ll~~ga~------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          175 HLHVLNRLCELAPT------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             CHHHHHHHHHSCGG------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CHHHHHHHHHcCCc------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            99999999999998      445  8888999999999 999 999999998774

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=7.7e-23  Score=120.48  Aligned_cols=96  Identities=22%  Similarity=0.254  Sum_probs=89.1

Q ss_pred             ccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChH
Q 040650           28 EDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSI  106 (136)
Q Consensus        28 ~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~  106 (136)
                      ....+.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|.||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~d~~g~t~   83 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD------VNAVDAIGFTP   83 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCH
Confidence            345678999999999999999999 99999999999999999999999999999999999998      77999999999


Q ss_pred             HHHHHhcC-HHHHHHHHHhccCcc
Q 040650          107 LHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       107 l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ||+|+..| .+++++|+++|+++.
T Consensus        84 L~~A~~~~~~~~v~~Ll~~g~~~~  107 (136)
T 2jab_A           84 LHLAAFIGHLEIAEVLLKHGADVN  107 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc
Confidence            99999999 999999999998764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1e-23  Score=135.38  Aligned_cols=94  Identities=21%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             cCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccc-cCCChH
Q 040650           29 DNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATD-KEGNSI  106 (136)
Q Consensus        29 ~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~~~t~  106 (136)
                      +..|.||||+|+..|+.++++.| . +++++.+|..|.||||+|+..|+.+++++|+++|++      ++.++ ..|+||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~~g~t~  114 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------LDHRDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------TTCCCSSSCCCH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCcCCCCCCCCH
Confidence            45789999999999999999999 8 999999999999999999999999999999999998      66888 889999


Q ss_pred             HHHHHhcC-HHHHHHHHHhccCcc
Q 040650          107 LHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       107 l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ||+|+..| .+++++|+++|+++.
T Consensus       115 L~~A~~~g~~~~v~~Ll~~ga~~~  138 (244)
T 3ui2_A          115 LHMAAGYVRPEVVEALVELGADIE  138 (244)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999 999999999998764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=136.88  Aligned_cols=100  Identities=18%  Similarity=0.109  Sum_probs=89.4

Q ss_pred             Cchhhhc---CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC
Q 040650            1 MHKALVE---GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         1 l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      ||+|+..   ++.+++++|++.|++++  ..|..|.||||+|+..|+.+++++| +.|++++.+|..|.||||+|+..++
T Consensus       194 Lh~A~~~~~~~~~~iv~~Ll~~gadvn--~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  271 (301)
T 2b0o_E          194 LHLAVKVANQASLPLVDFIIQNGGHLD--AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH  271 (301)
T ss_dssp             HHHHHHTCCTTTHHHHHHHHHHSSCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHhcccCcHHHHHHHHhcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            5889987   89999999999999998  8999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC
Q 040650           77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK  114 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  114 (136)
                      .+++++|+++|++            .|.||||+|+..|
T Consensus       272 ~~iv~~Ll~~ga~------------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          272 KECEELLEQAQAG------------TFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHHHHHHHHHHH------------TTSSCCC------
T ss_pred             HHHHHHHHHhcCC------------CCCChhHHHHhcC
Confidence            9999999999876            5789999999887

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=3.4e-22  Score=115.70  Aligned_cols=93  Identities=34%  Similarity=0.409  Sum_probs=88.2

Q ss_pred             CCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHH
Q 040650           31 GLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHL  109 (136)
Q Consensus        31 ~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~  109 (136)
                      +|.||||+|+..|+.+++++| ..+.+++..+..|.||||+|+..++.+++++|+++|++      ++.+|..|.||||+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~   74 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHL   74 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------CcccCCCCCcHHHH
Confidence            489999999999999999999 88999999999999999999999999999999999988      77999999999999


Q ss_pred             HHhcC-HHHHHHHHHhccCcc
Q 040650          110 AALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       110 a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      |+..| .+++++|+++|+.+.
T Consensus        75 A~~~~~~~~~~~Ll~~g~~~~   95 (126)
T 1n0r_A           75 AARNGHLEVVKLLLEAGADVN   95 (126)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHcChHHHHHHHHHcCCCCc
Confidence            99999 999999999998754

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.88  E-value=1e-22  Score=116.01  Aligned_cols=89  Identities=26%  Similarity=0.318  Sum_probs=82.8

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCCh
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNS  105 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t  105 (136)
                      ..+.+|.|+||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.+++++|+++|++      ++.+|..|+|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~------~~~~d~~g~t   92 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKT   92 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCC
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccccCCCc
Confidence            5678899999999999999999999 88999999999999999999999999999999999998      7799999999


Q ss_pred             HHHHHHhcC-HHHHHHH
Q 040650          106 ILHLAALNK-LIVVKIL  121 (136)
Q Consensus       106 ~l~~a~~~~-~~~~~~L  121 (136)
                      |||+|+..| .+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            999999999 9999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=8.2e-23  Score=122.95  Aligned_cols=101  Identities=16%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCc-HHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMT-PLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~-~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+|+ .|+.+++++|++.|.+++  ..+..|.| |||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.+
T Consensus        49 L~~A~-~~~~~~v~~Ll~~g~~~~--~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  125 (156)
T 1bi7_B           49 IQVMM-MGSARVAELLLLHGAEPN--CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD  125 (156)
T ss_dssp             TTSSC-TTCHHHHHHHHTTTCCCC--CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHH-cCCHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHH
Confidence            67875 899999999999999998  89999999 99999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHH
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLA  110 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a  110 (136)
                      ++++|+++|++      ++.++..|.||.+-+
T Consensus       126 ~v~~Ll~~ga~------~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          126 VARYLRAAAGG------TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHSSCC-----------------------
T ss_pred             HHHHHHHcCCC------CCccCcCcCcccccC
Confidence            99999999999      679999999997643

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=2.5e-22  Score=127.06  Aligned_cols=97  Identities=23%  Similarity=0.306  Sum_probs=90.5

Q ss_pred             ccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHH-hhhcchhhhhcccccCCCh
Q 040650           28 EDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEE-TKRHNLEHLFSATDKEGNS  105 (136)
Q Consensus        28 ~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~t  105 (136)
                      .+..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.+++++|+++ |++      ++.+|..|+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~------~~~~d~~g~t  142 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE------LNQQNKLGDT  142 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC------CCCCCTTSCC
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC------ccccCCCCCC
Confidence            355678999999999999999999 99999999999999999999999999999999998 888      7799999999


Q ss_pred             HHHHHHhcC-HHHHHHHHHhccCccc
Q 040650          106 ILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       106 ~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      |||+|+..| .+++++|+++|+++..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~ga~~~~  168 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAKGARTDL  168 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            999999999 9999999999987653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=5.2e-23  Score=139.33  Aligned_cols=114  Identities=12%  Similarity=0.046  Sum_probs=98.3

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCc-ccccCCCCcHHHHHHHcCChhhHHHh-hcccCccc--cCCCCCcHHHHHH-HhC
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRP-VVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAK--LTSNDETALILAV-KNS   75 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~--~~~~~~t~l~~a~-~~~   75 (136)
                      ||+|++.|+.+++++|+++|+++.. +..+.+ .||||+|+..|+.+++++| +.+++++.  .|..|.||||+|+ ..|
T Consensus       132 L~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G  210 (376)
T 2aja_A          132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG  210 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCC
Confidence            5899999999999999999975210 022223 8999999999999999999 99999877  7888999999999 999


Q ss_pred             CHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           76 QIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      +.+++++|+++|+.             |.||+++|+..| .+++++|+++|+..
T Consensus       211 ~~eiv~~Ll~~ga~-------------~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          211 HHNVINFLLDCPVM-------------LAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             CHHHHHHHTTSHHH-------------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCc-------------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence            99999999987642             679999999999 99999999998753

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=2.8e-20  Score=105.84  Aligned_cols=81  Identities=23%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|.+++  ..|..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus        28 L~~A~~~g~~~~v~~Ll~~g~~i~--~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~  105 (110)
T 2zgd_A           28 LLEAARAGQDDEVRILMANGADVA--AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL  105 (110)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHH
Confidence            589999999999999999999988  8899999999999999999999999 8899999999999999999999999999


Q ss_pred             HHHH
Q 040650           80 FKIL   83 (136)
Q Consensus        80 ~~~L   83 (136)
                      +++|
T Consensus       106 ~~~L  109 (110)
T 2zgd_A          106 AEIL  109 (110)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9886

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.5e-20  Score=121.78  Aligned_cols=87  Identities=16%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             Cchhhhc---CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC
Q 040650            1 MHKALVE---GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         1 l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      ||+|+..   ++.+++++|++.|++++  ..|..|.||||+|+..|+.+++++| ..|++++.+|..|.||||+|+..|+
T Consensus       173 Lh~A~~~~~~~~~~~v~~Ll~~ga~in--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~  250 (278)
T 1dcq_A          173 LHLAVRSVDRTSLHIVDFLVQNSGNLD--KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH  250 (278)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHHCSCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHhcccchHHHHHHHHHCCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCC
Confidence            5899999   89999999999999998  8999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 040650           77 IDAFKILMEETKR   89 (136)
Q Consensus        77 ~~~~~~Ll~~~~~   89 (136)
                      .+++++|+++|+.
T Consensus       251 ~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          251 EHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999886

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=9.7e-20  Score=123.03  Aligned_cols=120  Identities=17%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..|+.+++++|++.|++++  ..|..|.||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..++.++
T Consensus       239 Lh~Aa~~g~~~iv~~LL~~Gadvn--~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~i  316 (368)
T 3jue_A          239 LIQATAANSLLACEFLLQNGANVN--QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI  316 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHH
Confidence            689999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC---HHHHHHHHHhc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK---LIVVKILMLRM  125 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~Ll~~g  125 (136)
                      +++|+..+....   .....+..+.|+++++....   .+..+.|...+
T Consensus       317 v~lLl~~~~~~~---~~~~~~~~~~t~l~i~~~~~~~~~~~~ekl~r~~  362 (368)
T 3jue_A          317 VTLLRLAKMREA---EAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRS  362 (368)
T ss_dssp             HHHHHHHHC----------------------------------------
T ss_pred             HHHHHHcCCCcc---cccccCCCCCCHHHHHHHHHhhcCCCHHHHHhcC
Confidence            999998874421   13355677889988776654   34445555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 6e-08
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 33  MTPLHRAAVDGDGGVITE-IASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
           +TPLH A+  G   ++   +    S        ET L +A +    +  K L++   + N
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 92  LEHLFSATDKEGNSILHLAALNKLIVVKILML 123
                 A  K+  + LH AA      +  L+L
Sbjct: 61  ------AKAKDDQTPLHCAARIGHTNMVKLLL 86

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 1  MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITE-IASSESLAK 59
          +H A   G   +V  L  L   + P V +  + TPLH AA  G   V    + +   +  
Sbjct: 4  LHVASFMGHLPIVKNL--LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 60 LTSNDETALILAVKNSQIDAFKILME 85
             +D+T L  A +    +  K+L+E
Sbjct: 62 KAKDDQTPLHCAARIGHTNMVKLLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 10/123 (8%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL 60
           +H    EG   V   L  +              TPLH A+  G+  ++  +   ++    
Sbjct: 268 LHLVAQEGHVPVADVL--IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 325

Query: 61  TSND-ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLI-VV 118
            +    + L  A +    D   +L++     N          +G + L +A     I V 
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN------EVSSDGTTPLAIAKRLGYISVT 379

Query: 119 KIL 121
            +L
Sbjct: 380 DVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 31/151 (20%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL 60
           +H A  +   EV   L  L        E    +TPLH AA +G   ++  + S ++   L
Sbjct: 202 LHIAAKQNQVEVARSL--LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 259

Query: 61  TSND-ETALILAVKNSQIDAFKILMEETKRHNLEHLFSAT-------------------- 99
            +    T L L  +   +    +L++     +       T                    
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 319

Query: 100 -------DKEGNSILHLAALNK-LIVVKILM 122
                   K G S LH AA      +V +L+
Sbjct: 320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 29  DNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSND-ETALILAVKNSQIDAFKILMEET 87
                +PLH+AA  G   ++T +  + +     S+D  T L +A +   I    +L   T
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVT 386

Query: 88  KRHNLEHLFSATDKEGNSI 106
              +   +   +DK   S 
Sbjct: 387 DETSFVLV---SDKHRMSF 402

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 34  TPLHRAAVDGDGGVITEIASSESLAKLTSND-ETALILAVKNSQIDAFKILMEETKRHNL 92
           +P+           ITE  + ES+  +      T L     NS  +  + L+    +  +
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 93  EHLFS--ATDKEGNSILH 108
                  A D + N+ L 
Sbjct: 62  AAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (82), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 61  TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVK 119
             + +T ++LA +  +I+    L+++           A D   ++   LA  N    +V 
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVE------AVDATDHTARQLAQANNHHNIVD 271

Query: 120 IL 121
           I 
Sbjct: 272 IF 273

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 4e-05
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 1   MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL 60
           +H A  +   E+   L  L+  + P  +D+   T +HRAA  G+  +I  +   ++   +
Sbjct: 107 LHYAASKNRHEIAVML--LEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI 164

Query: 61  TSND-ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVK 119
              +  T L LA    +++  K+L+ +             +KE  + L +A     +++K
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIY------IENKEEKTPLQVAKGGLGLILK 218

Query: 120 IL 121
            +
Sbjct: 219 RM 220

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 5e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 57  LAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN 113
              +T + +TAL LAV +        L+  +  H         +  G + LHLAA+ 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTALHLAAIL 55

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 25  PVVEDNGLMTPLHRAAVDGDGGVITEIASSE-SLAKLTSNDETALILAVKNSQIDAFKIL 83
            V       T LH AA  G   V+  +  +   +     +  T L  A    + +A +IL
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 84  MEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKIL 121
           +E     ++E    A +K G +   +A  +   ++  L
Sbjct: 252 VE--NLCDME----AVNKVGQTAFDVADED---ILGYL 280

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 63  NDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN 113
           + +T L +AV    + A   L+   ++   E      +    + LHLA + 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVIT 50

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 28  EDNGLMTPLHRAAVDGDGGVI----TEIASSESLAKLTSNDETALILAVKNSQIDAFKIL 83
           +          AA+ G    +      + S E +  + + +  A  LA +N  +     L
Sbjct: 86  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 145

Query: 84  MEETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKILM 122
            E      +         E      LAA    L V+  L 
Sbjct: 146 CELAPTEIMAM----IQAENYHAFRLAAENGHLHVLNRLC 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.97
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.83
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.8
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.8
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.75
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.74
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.62

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-31  Score=153.06  Aligned_cols=114  Identities=16%  Similarity=0.094  Sum_probs=106.5

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCC-cHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDE-TALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~-t~l~~a~~~~~~~   78 (136)
                      ||+|++.|+.+++++|+++|++++  ..+..|.||+|+|+ .|+.+++++| ..+++++.++..+. +|||+|+..|+.+
T Consensus         7 L~~Aa~~G~~~~v~~Ll~~gad~n--~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           7 LATAAARGRVEEVRALLEAGANPN--APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTT--CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc--cccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            689999999999999999999998  89999999999765 7999999999 99999999987765 6999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHH
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILML  123 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~  123 (136)
                      ++++|+++|++      ++.+|..|+||||+|+.+| .+++++|++
T Consensus        84 ~v~~Ll~~ga~------~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          84 TLVVLHRAGAR------LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHTCC------SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccc------cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999998      7799999999999999999 999999975

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-30  Score=148.76  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=107.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+.||..|+.+++++|+++|++++  .+|..|+||||+|+..++.+++++| ..+++++.+|..|+||||+|+.+|+.++
T Consensus         5 L~~A~~~G~~~~v~~Ll~~g~d~n--~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIYEVDDPS--LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCC--CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcc--ccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            578999999999999999999998  9999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhccccc-CCChHHHHH--HhcC-HHHHHHHHHhcc
Q 040650           80 FKILMEETKRHNLEHLFSATDK-EGNSILHLA--ALNK-LIVVKILMLRML  126 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~-~~~t~l~~a--~~~~-~~~~~~Ll~~g~  126 (136)
                      +++|+++|++      ++..+. .++||++++  +..| .+++++|++.+.
T Consensus        83 v~~Ll~~ga~------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          83 CKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHTTCC------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCC------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999998      666664 588887765  5678 999999998653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3e-28  Score=145.08  Aligned_cols=123  Identities=16%  Similarity=0.088  Sum_probs=108.5

Q ss_pred             chhhhcCChhhhhHhhccCCCCC----cccccCCCCcHHHHHHHc---CChhhHHHh-hcccCccccCCCCCcHHHHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESR----PVVEDNGLMTPLHRAAVD---GDGGVITEI-ASSESLAKLTSNDETALILAVK   73 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~~~l~~a~~~---~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~   73 (136)
                      ..|++.+++..+..++..|.++.    ....+..|+||||+|+..   +..+++++| +.|++++.+|..|.||||+|+.
T Consensus        11 ~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~   90 (154)
T d1dcqa1          11 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCL   90 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccc
Confidence            46789999999999998887655    012367799999999974   678899999 9999999999999999999999


Q ss_pred             hCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           74 NSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        74 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      .|+.+++++|+++|++      ++.+|..|+||||+|+..| .+++++|++.++...+
T Consensus        91 ~~~~~~v~~Ll~~gad------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          91 TDNAECLKLLLRGKAS------IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             TTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             cccccccccccccCcc------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence            9999999999999998      7799999999999999999 9999999998876543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.8e-30  Score=148.72  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=98.8

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |++|++.|+.+++++|+++|++++  ..+..|+||||+|+..|+.+++++| ..+++++.+|..|.||||+|+..|+.++
T Consensus         6 L~~A~~~g~~~~v~~Ll~~g~d~n--~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           6 FMWALKNGDLDEVKDYVAKGEDVN--RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCC--CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHhhhccc--cccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            578999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHh
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAAL  112 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~  112 (136)
                      +++|+++|++      ++.+|..|.||||+|..
T Consensus        84 v~~Ll~~Gad------~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          84 VKLLLSKGAD------KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHTTCCC------SSSSSSSTCCCCCTCSS
T ss_pred             hhhhhccccc------ceeeCCCCCCHHHHHhH
Confidence            9999999998      77999999999998843

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=142.23  Aligned_cols=122  Identities=16%  Similarity=0.120  Sum_probs=87.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+||..|+.+++++|+++|++++  ..|..|.||||+|+ .++.+++++| ..+++++.++..+.++++.++..+..+.
T Consensus         5 Lh~Aa~~g~~~~v~~Ll~~g~d~n--~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           5 LASAAARGDLEQLTSLLQNNVNVN--AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTT--CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcC--ccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            689999999999999999999998  89999999999886 7899999999 8887777666655555555555555555


Q ss_pred             HHHHHHHhhhcc---------------------------hh-hhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           80 FKILMEETKRHN---------------------------LE-HLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        80 ~~~Ll~~~~~~~---------------------------~~-~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      +++|+..+.+.+                           .. ...+.+|..|+||||+|+..+ .+++++|+++|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            555555544421                           00 014455666666666666666 66666666654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.5e-27  Score=139.62  Aligned_cols=112  Identities=18%  Similarity=0.129  Sum_probs=92.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hc--------------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-AS--------------------------   53 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~--------------------------   53 (136)
                      ||.||+.|+.+++++|+++|++.+   .+..|+||||+|+..++.++++.+ ..                          
T Consensus         6 L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           6 LLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcc---cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            578999999999999999998765   589999999999999888776665 22                          


Q ss_pred             -------ccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHH
Q 040650           54 -------SESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKIL  121 (136)
Q Consensus        54 -------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~L  121 (136)
                             +.+++.++..|.||||+|+..|+.+++++|+++|++      ++.+|.+|.||||+|+.+| .+++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad------~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccC------CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                   344555667788888888888888888888888887      6678888888888888888 8888765

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=144.79  Aligned_cols=121  Identities=22%  Similarity=0.211  Sum_probs=105.4

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      +.++..++.+++++|++.+.+++  ..|..|.||||+|+..|+.+++++| +.|++++.++..|.||||+|+..+..+++
T Consensus        75 ~~~~~~~~~~i~~~Ll~~~~d~~--~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~  152 (223)
T d1uoha_          75 HIAASAGRDEIVKALLGKGAQVN--AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI  152 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccchhHHHhccCceeE--eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchh
Confidence            45667777888888888888777  7888899999999999999999998 88888888888899999999999999999


Q ss_pred             HHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           81 KILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        81 ~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ++|...+.+      ++.+|..|+||||+|+..| .+++++|++.|+++..
T Consensus       153 ~~L~~~~~~------i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         153 HILLYYKAS------TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             HHHHHTTCC------SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             hhhccccce------eeeccCCCCceeccccccCcHHHHHHHHHCCCCCCC
Confidence            988888887      7799999999999999999 9999999999987654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=145.59  Aligned_cols=114  Identities=21%  Similarity=0.246  Sum_probs=107.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+..++.+++++|++.|.+++  ..+..|.||||+++..+..++.++| ..+.+++.+|..|.||||+|+..|+.++
T Consensus       107 L~~A~~~~~~e~~~~Ll~~g~d~~--~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~  184 (223)
T d1uoha_         107 LHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE  184 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hhHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHH
Confidence            588999999999999999999988  8899999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHH
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILML  123 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~  123 (136)
                      +++|++.|++      ++.+|..|+||||+| ..| .+++++|++
T Consensus       185 v~~LL~~Gad------~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         185 AKLLVSQGAS------IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCC------SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHHHCCCC------CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999998      779999999999998 467 889999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.7e-26  Score=135.81  Aligned_cols=113  Identities=20%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      |+.||..|+.++|++|++. +.+++  ..|..|+||||+|+ .++.+++++| ..+.+++..+..|.+|++.++..++.+
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n--~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPD--ALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTT--CCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCC--ccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            3556666666666666653 34444  55666666666554 3455555555 444444444444444444444444444


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHH
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM  122 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll  122 (136)
                      ++++++++|++      ++.+|..|.||||+|+..| .+++++|+
T Consensus        83 ~~~~~l~~~~~------~n~~~~~~~t~L~~A~~~~~~~i~~~L~  121 (156)
T d1bd8a_          83 TLKVLVEHGAD------VNVPDGTGALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             HHHHHHHTTCC------SCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccc------cccccCCCCeeecccccccccccccccc
Confidence            44444444444      3344444444444444444 44444433

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.3e-26  Score=147.66  Aligned_cols=129  Identities=20%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCC-cccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESR-PVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                      ||+||+.|+.+++++|++.|++.. ++..+..|.||||+|+..|+.+++++| +.|++++.+|..|.||||+|+..++.+
T Consensus        13 Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~   92 (255)
T d1oy3d_          13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT   92 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchH
Confidence            588888888888888888876633 236677888888888888888888888 888888888888888888888888888


Q ss_pred             HHHHHHHHhhhcc-----------------------------------------hhhhhcccccCCChHHHHHHhcC-HH
Q 040650           79 AFKILMEETKRHN-----------------------------------------LEHLFSATDKEGNSILHLAALNK-LI  116 (136)
Q Consensus        79 ~~~~Ll~~~~~~~-----------------------------------------~~~~~~~~~~~~~t~l~~a~~~~-~~  116 (136)
                      ++++|++.+....                                         ....++.+|..|.||||+|+..+ .+
T Consensus        93 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~  172 (255)
T d1oy3d_          93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE  172 (255)
T ss_dssp             HHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccc
Confidence            8777764432211                                         23444556666777777777777 77


Q ss_pred             HHHHHHHhccCcc
Q 040650          117 VVKILMLRMLYPV  129 (136)
Q Consensus       117 ~~~~Ll~~g~~~~  129 (136)
                      ++++|+++++.+.
T Consensus       173 ~v~~Ll~~~~~~~  185 (255)
T d1oy3d_         173 MVRLLRDAGADLN  185 (255)
T ss_dssp             HHHHHHHHTCCTT
T ss_pred             cccchhccccccc
Confidence            7777776666554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6.8e-26  Score=144.22  Aligned_cols=92  Identities=23%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             CCCCcHHHHHHHcCChhhHHHh-hcccCcccc-CCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHH
Q 040650           30 NGLMTPLHRAAVDGDGGVITEI-ASSESLAKL-TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSIL  107 (136)
Q Consensus        30 ~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l  107 (136)
                      ..|.||||+|+..++.+++++| ..++..+.. +..|.||||+|+..++.+++++|+++|++      ++.+|..|+|||
T Consensus       156 ~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad------in~~d~~g~t~L  229 (255)
T d1oy3d_         156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------PTARMYGGRTPL  229 (255)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHH
T ss_pred             ccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC------CCCCCCCCCCHH
Confidence            3455566666666666666666 555544433 34566777777777777777777766666      567777777777


Q ss_pred             HHHHhcC-HHHHHHHHHhccC
Q 040650          108 HLAALNK-LIVVKILMLRMLY  127 (136)
Q Consensus       108 ~~a~~~~-~~~~~~Ll~~g~~  127 (136)
                      |+|+..+ .+++++|+++||.
T Consensus       230 ~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         230 GSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHCCCHHHHHHHHHcCCC
Confidence            7777777 7777777777764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=8.7e-26  Score=146.17  Aligned_cols=128  Identities=18%  Similarity=0.140  Sum_probs=107.0

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      |+.||..|+.++|++|+++|++++  ..|..|.||||+|+..|+.+++++| ..+.+....+..+.+||+.++..++.++
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gadvn--~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~  121 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGADIN--YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI  121 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTT--CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccch
Confidence            578999999999999999999998  8999999999999999999999999 8887777666677777777777777777


Q ss_pred             HHHHHHHhhhcc--------------------------------------------------------------------
Q 040650           80 FKILMEETKRHN--------------------------------------------------------------------   91 (136)
Q Consensus        80 ~~~Ll~~~~~~~--------------------------------------------------------------------   91 (136)
                      ++.|+++|...+                                                                    
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  201 (291)
T d1s70b_         122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             hhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCC
Confidence            777776654322                                                                    


Q ss_pred             -------------------hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           92 -------------------LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        92 -------------------~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                                         .+..++.++..|+||||+|+..| .+++++|+++|+++..
T Consensus       202 ~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA  260 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             hhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence                               22346678999999999999999 9999999999987543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=5.3e-25  Score=141.32  Aligned_cols=127  Identities=17%  Similarity=0.140  Sum_probs=109.0

Q ss_pred             CchhhhcCChhhhhHhh--------ccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHH
Q 040650            1 MHKALVEGDGEVVHFLG--------KLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILA   71 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll--------~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a   71 (136)
                      ||+||..|+.+++++|+        +.|++++  ..|..|.||||+|+..|+.+++++| +.|++++.+|..|.||+++|
T Consensus        37 Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn--~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a  114 (277)
T d2fo1e1          37 LHWIASNSSAEKSEDLIVHEAKECIAAGADVN--AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA  114 (277)
T ss_dssp             HHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc--ccCCCCCeeeccccccccccccccccccccccccccccccccccch
Confidence            69999999999998874        5678888  8999999999999999999999999 99999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHhhhc---c---------------------------------------------------------
Q 040650           72 VKNSQIDAFKILMEETKRH---N---------------------------------------------------------   91 (136)
Q Consensus        72 ~~~~~~~~~~~Ll~~~~~~---~---------------------------------------------------------   91 (136)
                      ...++.++++++...+...   +                                                         
T Consensus       115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~  194 (277)
T d2fo1e1         115 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  194 (277)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             hhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccc
Confidence            9999998888876543211   0                                                         


Q ss_pred             ---------------hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           92 ---------------LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        92 ---------------~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                                     .....+.+|..|+||||+|+..| .+++++|+++|+++.
T Consensus       195 ~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin  248 (277)
T d2fo1e1         195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE  248 (277)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             cccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence                           22344567889999999999999 999999999998754

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=125.84  Aligned_cols=90  Identities=22%  Similarity=0.201  Sum_probs=86.0

Q ss_pred             cHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHh
Q 040650           34 TPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL  112 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~  112 (136)
                      ++|+.|+..|+.+++++| +.|++++.+|..|+||||+|+..++.+++++|+++|++      ++.+|.+|+||||+|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~------~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccc------cccccccCcccccccch
Confidence            578999999999999999 99999999999999999999999999999999999998      77999999999999999


Q ss_pred             cC-HHHHHHHHHhccCcc
Q 040650          113 NK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       113 ~~-~~~~~~Ll~~g~~~~  129 (136)
                      .| .+++++|+++|+++.
T Consensus        77 ~g~~~~v~~Ll~~ga~v~   94 (130)
T d1ycsb1          77 CNNVQVCKFLVESGAAVF   94 (130)
T ss_dssp             TTCHHHHHHHHHTTCCTT
T ss_pred             hhHHHHHHHHHHcCCCcc
Confidence            99 999999999998764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.4e-24  Score=136.09  Aligned_cols=122  Identities=16%  Similarity=0.042  Sum_probs=94.3

Q ss_pred             CchhhhcCChhhhhHhhccC-CCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccc-------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLD-LESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAK-------------------   59 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~-------------------   59 (136)
                      ||+||+.|+.++++.|++.. ..++  ..|.+|+||||+|+..|+.+++++| +.+++++.                   
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~~~~~~--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccc--ccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            68899999999998888754 4555  7888899999999999998888888 66655432                   


Q ss_pred             ----------------------------------------------------cCCCCCcHHHHHHHhCCHHHHHHHHHHh
Q 040650           60 ----------------------------------------------------LTSNDETALILAVKNSQIDAFKILMEET   87 (136)
Q Consensus        60 ----------------------------------------------------~~~~~~t~l~~a~~~~~~~~~~~Ll~~~   87 (136)
                                                                          ++..|+||||+|+..++.+++++|++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence                                                                1235667777777777777777777765


Q ss_pred             hhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh-ccCcc
Q 040650           88 KRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR-MLYPV  129 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~-g~~~~  129 (136)
                      ..     .++.+|..|+||||+|+..| .+++++|+++ |+++.
T Consensus       162 ~~-----~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~  200 (229)
T d1ixva_         162 KS-----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  200 (229)
T ss_dssp             CC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             cc-----cccccccccCCchhhhcccccHHHHHHHHHhcCCCCC
Confidence            32     26788999999999999999 9999999974 76654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=129.45  Aligned_cols=115  Identities=20%  Similarity=0.207  Sum_probs=106.2

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+|+ .++.+++++|++.+.+++  ..+..|.+|+++++..++.++++++ ..+++++.+|..|.||||+|+..|+.++
T Consensus        40 L~~A~-~~~~~~v~~Ll~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i  116 (156)
T d1bd8a_          40 LQVMM-FGSTAIALELLKQGASPN--VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV  116 (156)
T ss_dssp             HHHSC-TTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ccccc-cccccccccccccccccc--ccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccc
Confidence            46665 588999999999999988  8889999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhc
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRM  125 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g  125 (136)
                      +++|+ .|++      ++.+|..|+||||+|+..| .+++++|++|.
T Consensus       117 ~~~L~-~~~~------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h~  156 (156)
T d1bd8a_         117 VSFLA-AESD------LHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             HHHHH-TTSC------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             ccccc-cccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHhhC
Confidence            99887 6777      7799999999999999999 99999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.7e-25  Score=126.33  Aligned_cols=92  Identities=18%  Similarity=0.196  Sum_probs=87.3

Q ss_pred             CcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHH
Q 040650           33 MTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA  111 (136)
Q Consensus        33 ~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~  111 (136)
                      .|||++|+..|+.+++++| +.|++++.++..|.||||+|+..++.+++++|+++|++      ++.+|..|+||||+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d------in~~d~~g~tpLh~A~   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD------INAPDKHHITPLLSAV   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT------TTCCSSSCSCHHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccce------eeecccccccchhhhh
Confidence            3799999999999999999 99999999999999999999999999999999999998      7799999999999999


Q ss_pred             hcC-HHHHHHHHHhccCccc
Q 040650          112 LNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus       112 ~~~-~~~~~~Ll~~g~~~~~  130 (136)
                      ..| .+++++|+++|+++..
T Consensus        77 ~~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          77 YEGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             TTTCCHHHHHHHTTCCCSSS
T ss_pred             hcCchhhhhhhhccccccee
Confidence            999 9999999999987653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=145.96  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=106.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ++.|++.++.+++++|++.|.+++  ..+..+.||||.++..+..++++++ ..+++++.+|..|.||||+|+..|+.++
T Consensus       268 l~~a~~~~~~~i~~~Ll~~g~~~~--~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~i  345 (408)
T d1n11a_         268 LHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI  345 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hhhhhhcCcHHHHHHHHHCCCccc--cccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHH
Confidence            367889999999999999999988  8888999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHH
Q 040650           80 FKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILML  123 (136)
Q Consensus        80 ~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~  123 (136)
                      +++|+++|++      ++.+|.+|+||||+|++.| .+++++|..
T Consensus       346 v~~Ll~~GAd------~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         346 VTLLLKNGAS------PNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHHHHHTTCC------SCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999      7799999999999999999 998886643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-24  Score=134.75  Aligned_cols=128  Identities=17%  Similarity=0.121  Sum_probs=93.1

Q ss_pred             CchhhhcCChhhhhHhh----ccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhC
Q 040650            1 MHKALVEGDGEVVHFLG----KLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNS   75 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll----~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~   75 (136)
                      ||+|+..|+.++++.++    ..+.+++  ..|.+|.||||+|+..|+.+++++| ..+++++.+|..|.|||+.++..+
T Consensus         6 Lh~A~~~g~~~~~~~li~~~~~~~~~in--~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~   83 (221)
T d1iknd_           6 LHLAIIHEEKALTMEVIRQVKGDLAFLN--FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG   83 (221)
T ss_dssp             THHHHHTTCSSSSSCCCC-----CCCCC--CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCcc--cCCCCCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            67888888865555444    4566666  7788888888888888888888888 778888877777778888887777


Q ss_pred             CHHHHHHHHHHhhhcc---------------------------------hhhhhcc-cccCCChHHHHHHhcC-HHHHHH
Q 040650           76 QIDAFKILMEETKRHN---------------------------------LEHLFSA-TDKEGNSILHLAALNK-LIVVKI  120 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~---------------------------------~~~~~~~-~~~~~~t~l~~a~~~~-~~~~~~  120 (136)
                      ..++++.++..+....                                 ....++. .+.+|.||||+|+..| .+++++
T Consensus        84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~  163 (221)
T d1iknd_          84 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL  163 (221)
T ss_dssp             CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHH
Confidence            7777777766543321                                 1112333 3467999999999999 999999


Q ss_pred             HHHhccCccc
Q 040650          121 LMLRMLYPVS  130 (136)
Q Consensus       121 Ll~~g~~~~~  130 (136)
                      |+++|+++..
T Consensus       164 Ll~~gad~~~  173 (221)
T d1iknd_         164 LLKCGADVNR  173 (221)
T ss_dssp             HHTTTCCSCC
T ss_pred             HHhcCCcccc
Confidence            9999987643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2e-26  Score=153.09  Aligned_cols=123  Identities=15%  Similarity=0.062  Sum_probs=102.3

Q ss_pred             CchhhhcCChhhhhH---hhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccC--CCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHF---LGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLT--SNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~--~~~~t~l~~a~~~   74 (136)
                      ||+||+.|+.+++++   |++.|++++  ..+..|+||||+|+..|+.+++++| +.|++++..+  ..|.||||+|+..
T Consensus        94 L~~Aa~~g~~~~~~~~~~L~~~~~~in--~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~  171 (346)
T d2ajaa1          94 CFVAAITGCSSALDTLCLLLTSDEIVK--VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN  171 (346)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHhCCCccc--ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH
Confidence            478999999876655   788999998  8999999999999999999999999 9999888765  4589999999999


Q ss_pred             CCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCc
Q 040650           75 SQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYP  128 (136)
Q Consensus        75 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~  128 (136)
                      |+.+++++|++.|+...   ..+..+..+.||++.|+.+| .+++++|++.|+..
T Consensus       172 g~~~iv~~Ll~~~~~~~---~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         172 GHLHVLNRLCELAPTEA---TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             TCHHHHHHHHHSCGGGH---HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             hhHHHHHHHHHcCCccc---ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            99999999999887632   13455566788888999999 99999999998754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.7e-24  Score=136.96  Aligned_cols=121  Identities=21%  Similarity=0.210  Sum_probs=107.4

Q ss_pred             CchhhhcCChhhhhHhhcc-CCCCCcccccCCCCcHHHHHHHcC----ChhhHHHh-hcccCccccCCCCCcHHHHHHHh
Q 040650            1 MHKALVEGDGEVVHFLGKL-DLESRPVVEDNGLMTPLHRAAVDG----DGGVITEI-ASSESLAKLTSNDETALILAVKN   74 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~~~l~~a~~~~----~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~   74 (136)
                      ||+|++.|+.+++++|+++ |.+++  ..+..|.++...+...+    ..+++++| +.+++++.++..|.||||.|+..
T Consensus       152 L~~A~~~~~~~~~~~Ll~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~  229 (285)
T d1wdya_         152 LMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhccCCCcc--cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhc
Confidence            5889999999999999975 66777  88889988887765543    34688888 89999999999999999999999


Q ss_pred             CCHHHHHHHHHH-hhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           75 SQIDAFKILMEE-TKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        75 ~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ++.+++++|+++ |.+      ++.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus       230 ~~~~~v~~lL~~~g~d------in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         230 KHLGLVQRLLEQEHIE------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             TCHHHHHHHHHSSSCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CcHHHHHHHHHcCCCC------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            999999999985 777      7799999999999999999 999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.2e-24  Score=142.34  Aligned_cols=87  Identities=24%  Similarity=0.294  Sum_probs=82.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||+||..|+.++|++|++.|++++  ..|..|.||||+|+..|+.+++++| +.|++++.++..|.||||+|+..|+.++
T Consensus         4 L~~Aa~~g~~~~v~~Ll~~g~~in--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           4 LHVASFMGHLPIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCcCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            699999999999999999999998  8999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 040650           80 FKILMEETKR   89 (136)
Q Consensus        80 ~~~Ll~~~~~   89 (136)
                      +++|+..+..
T Consensus        82 ~~~Ll~~~~~   91 (408)
T d1n11a_          82 VKLLLENNAN   91 (408)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHhhhc
Confidence            9999876554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.3e-24  Score=133.91  Aligned_cols=116  Identities=24%  Similarity=0.214  Sum_probs=105.5

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcc-cCccccCCCCCcHHHHHHHhCCHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASS-ESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~-~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      +.++..++.+++++|++.+....  ..+..|+||+|+|+..|+.++++.| ..+ .+++.+|..|.||||+|+..++.++
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~  187 (229)
T d1ixva_         110 HLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA  187 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccccchhhhhhhhhhhccccc--ccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHH
Confidence            56788899999999999998888  8899999999999999999999999 554 7889999999999999999999999


Q ss_pred             HHHHHHH-hhhcchhhhhcccccCCChHHHHHHhcCHHHHHHHHHhccC
Q 040650           80 FKILMEE-TKRHNLEHLFSATDKEGNSILHLAALNKLIVVKILMLRMLY  127 (136)
Q Consensus        80 ~~~Ll~~-~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~Ll~~g~~  127 (136)
                      +++|+++ |++      ++.+|..|+||||+|+.  .+++++|+++|++
T Consensus       188 v~~Ll~~~gad------~~~~d~~g~t~l~~A~~--~~~~~~Ll~~g~d  228 (229)
T d1ixva_         188 AVLLVEKYGAE------YDLVDNKGAKAEDVALN--EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHCCC------SCCCCTTSCCTGGGCSC--HHHHHHHHHHCCC
T ss_pred             HHHHHHhcCCC------CCCcCCCCCCHHHHHhh--HHHHHHHHHcCCC
Confidence            9999974 888      77999999999999874  5899999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.2e-23  Score=135.90  Aligned_cols=128  Identities=20%  Similarity=0.155  Sum_probs=94.4

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCCh-------hhHHHhhcccCccccCCCCCcHHHHHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDG-------GVITEIASSESLAKLTSNDETALILAVK   73 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~-------~~~~~l~~~~~~~~~~~~~~t~l~~a~~   73 (136)
                      ||+||..|+.+++++|++.|++++  ..|..|+||||.|+..++.       ++++++  ...+...|..|+||||+++.
T Consensus       111 LH~Aa~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l--~~~~~~~d~~g~t~lh~~~~  186 (301)
T d1sw6a_         111 LHWLTSIANLELVKHLVKHGSNRL--YGDNMGESCLVKAVKSVNNYDSGTFEALLDYL--YPCLILEDSMNRTILHHIII  186 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH--GGGGGEECTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC--cCCcccccHHHHhhhcccchhhhhHHHHHHHH--hhhhhhcccccCCHHHHHHH
Confidence            689999999999999999999888  8899999999999986642       233333  33455667888999998876


Q ss_pred             hCC----HHH--------HHHHHHHhhhcc-------------------------------hhhhhcccccCCChHHHHH
Q 040650           74 NSQ----IDA--------FKILMEETKRHN-------------------------------LEHLFSATDKEGNSILHLA  110 (136)
Q Consensus        74 ~~~----~~~--------~~~Ll~~~~~~~-------------------------------~~~~~~~~~~~~~t~l~~a  110 (136)
                      .+.    ...        +.++...+....                               ....++.+|..|+||||+|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A  266 (301)
T d1sw6a_         187 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA  266 (301)
T ss_dssp             HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHH
T ss_pred             HhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHH
Confidence            543    222        233333333211                               1233788999999999999


Q ss_pred             HhcC-HHHHHHHHHhccCccchh
Q 040650          111 ALNK-LIVVKILMLRMLYPVSYQ  132 (136)
Q Consensus       111 ~~~~-~~~~~~Ll~~g~~~~~~~  132 (136)
                      +..| .+++++|+++|+++...+
T Consensus       267 ~~~g~~~iv~~Ll~~GAd~~~~n  289 (301)
T d1sw6a_         267 ARLGNISIVDALLDYGADPFIAN  289 (301)
T ss_dssp             HHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCC
Confidence            9999 999999999999875443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=7.6e-23  Score=126.55  Aligned_cols=110  Identities=23%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             hhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHH
Q 040650            4 ALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKI   82 (136)
Q Consensus         4 a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~   82 (136)
                      +.........+.|.+.+.+++  ..+..|.||+++++..+..++++.+ ..+.+++.+|..|.||||+|+..|+.+++++
T Consensus        97 ~~~~~~~~~~~~L~~~~~~~~--~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_          97 AARLAIEGMVEDLITADADIN--AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cccccchhhhhhhhhhccccc--ccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHH
Confidence            445566777888889999888  8899999999999999999999999 8899999999999999999999999999999


Q ss_pred             HHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHH
Q 040650           83 LMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKIL  121 (136)
Q Consensus        83 Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~L  121 (136)
                      |+++|++      ++.+|..|+||||+|+.+| .++|++|
T Consensus       175 Ll~~gad------~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         175 LLDNFAN------REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999998      7799999999999999999 9999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=3.7e-23  Score=132.65  Aligned_cols=115  Identities=20%  Similarity=0.300  Sum_probs=95.6

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-----------------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-----------------------------   51 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-----------------------------   51 (136)
                      ||+|++.|+.+++++|+++|++++  ..+..|.||+++++..++.++.+.+                             
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n--~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPT--IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEG  155 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCS
T ss_pred             eccccccccccccccccccccccc--cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccc
Confidence            689999999999999999999887  7777777777776666554333322                             


Q ss_pred             -----------------------------------------------------hcccCccccCCCCCcHHHHHHHhCCHH
Q 040650           52 -----------------------------------------------------ASSESLAKLTSNDETALILAVKNSQID   78 (136)
Q Consensus        52 -----------------------------------------------------~~~~~~~~~~~~~~t~l~~a~~~~~~~   78 (136)
                                                                           ..+.+.+.+|..|.||||+|+..|+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (277)
T d2fo1e1         156 RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE  235 (277)
T ss_dssp             TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence                                                                 333444456778999999999999999


Q ss_pred             HHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHH
Q 040650           79 AFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILML  123 (136)
Q Consensus        79 ~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~  123 (136)
                      ++++|+++|++      ++.+|..|+||||+|+..| .+++++|++
T Consensus       236 iv~~Ll~~gad------in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         236 VVMYLIQQGAS------VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHTTCC------SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHCcCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999998      7799999999999999999 999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.1e-24  Score=132.10  Aligned_cols=122  Identities=20%  Similarity=0.164  Sum_probs=100.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-----------------------------
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-----------------------------   51 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-----------------------------   51 (136)
                      ||+||..|+.+++++|++.|++++  ..|..|.+|+++++..+..++++.+                             
T Consensus        43 Lh~A~~~~~~~iv~~L~~~g~d~~--~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~  120 (221)
T d1iknd_          43 LHLAVITNQPEIAEALLGAGCDPE--LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI  120 (221)
T ss_dssp             HHHHHHTTCHHHHHCCCSCCCCSC--CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred             cccccccccccccccccccccccc--ccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhh
Confidence            588999999999999999888887  7777777777777766666655544                             


Q ss_pred             -----------hcccCccccC-CCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHH
Q 040650           52 -----------ASSESLAKLT-SNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVV  118 (136)
Q Consensus        52 -----------~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~  118 (136)
                                 ..+..++..+ ..|.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+|+..+ .+++
T Consensus       121 ~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad------~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD------VNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC------SCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             cCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc------ccccCCCCCCHHHHHHHCCCHHHH
Confidence                       3333444333 5699999999999999999999999998      7799999999999999999 9999


Q ss_pred             HHHHHhccCccc
Q 040650          119 KILMLRMLYPVS  130 (136)
Q Consensus       119 ~~Ll~~g~~~~~  130 (136)
                      ++|++.+.....
T Consensus       195 ~~l~~~~~~~~~  206 (221)
T d1iknd_         195 QQLGQLTLENLQ  206 (221)
T ss_dssp             HHHHTTSCGGGS
T ss_pred             HHHHHcCCcccc
Confidence            999998866544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=124.04  Aligned_cols=127  Identities=24%  Similarity=0.221  Sum_probs=100.0

Q ss_pred             CchhhhcCChhhhhHhhc----cCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhC
Q 040650            1 MHKALVEGDGEVVHFLGK----LDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNS   75 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~   75 (136)
                      ||+||+.|+.+++++|++    .|.+++  ..|..|+||||+|+..|+.+++++| +.++..+..+..+.++++.|...+
T Consensus         7 Lh~A~~~g~~~~v~~Ll~~~~~~g~~in--~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~   84 (228)
T d1k1aa_           7 LHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHR   84 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCC--ccCCCCCccceehhcccccccccccccccccccccccccccccccccccc
Confidence            699999999999999885    677887  8999999999999999999999999 888777766665666666666666


Q ss_pred             CHHHHHHHHHHhhhcc----------------------------------------------------------------
Q 040650           76 QIDAFKILMEETKRHN----------------------------------------------------------------   91 (136)
Q Consensus        76 ~~~~~~~Ll~~~~~~~----------------------------------------------------------------   91 (136)
                      ..++++.+........                                                                
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~  164 (228)
T d1k1aa_          85 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL  164 (228)
T ss_dssp             CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhh
Confidence            6555555443321110                                                                


Q ss_pred             -hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           92 -LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        92 -~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                       .....+.+|..|.||||+|+..| .+++++|+++|+++.
T Consensus       165 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n  204 (228)
T d1k1aa_         165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  204 (228)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             hhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence             22336678899999999999999 999999999998754

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=1.7e-21  Score=120.40  Aligned_cols=121  Identities=21%  Similarity=0.235  Sum_probs=101.1

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCCh----------------------------------h
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDG----------------------------------G   46 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~----------------------------------~   46 (136)
                      ||+||+.|+.+++++|++.|+.++  ..+..+.++++.++..+..                                  .
T Consensus        27 L~~A~~~g~~e~v~~Ll~~g~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (209)
T d1ot8a_          27 LHLAARFARADAAKRLLDAGADAN--SQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEG  104 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTT
T ss_pred             HHHHHHcCCHHHHHHHHhhccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            588999999999999999888887  7777777766666654442                                  3


Q ss_pred             hHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHh
Q 040650           47 VITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLR  124 (136)
Q Consensus        47 ~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~  124 (136)
                      ..+.| ..+++++.++..|.|||+.++..+..++++.+++.+.+      ++.+|..|.||||+|+..| .+++++|+++
T Consensus       105 ~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_         105 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN------RDAQDDKDETPLFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc------ccccccccccccchhccccHHHHHHHHHHC
Confidence            34444 55667777888999999999999999999999999888      7799999999999999999 9999999999


Q ss_pred             ccCcc
Q 040650          125 MLYPV  129 (136)
Q Consensus       125 g~~~~  129 (136)
                      |+++.
T Consensus       179 gad~n  183 (209)
T d1ot8a_         179 FANRE  183 (209)
T ss_dssp             TCCTT
T ss_pred             CCCCC
Confidence            98754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=9.3e-22  Score=116.77  Aligned_cols=87  Identities=16%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             Cchhhhc---CChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC
Q 040650            1 MHKALVE---GDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         1 l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      ||+|++.   ++.+++++|++.|++++  .+|..|.||||+|+..|+.+++++| ..|++++.+|..|.||||+|+..|+
T Consensus        49 Lh~A~~~~~~~~~~iv~~Ll~~gadin--~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~  126 (154)
T d1dcqa1          49 LHLAVRSVDRTSLHIVDFLVQNSGNLD--KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH  126 (154)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHHCSCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCHHHHHHHHHcCCChh--hhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCC
Confidence            5888864   67899999999999998  8999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 040650           77 IDAFKILMEETKR   89 (136)
Q Consensus        77 ~~~~~~Ll~~~~~   89 (136)
                      .+++++|++.+..
T Consensus       127 ~~i~~~L~~~~~~  139 (154)
T d1dcqa1         127 EHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999998765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-21  Score=110.76  Aligned_cols=91  Identities=13%  Similarity=0.017  Sum_probs=83.0

Q ss_pred             CCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCC-hHHHH
Q 040650           32 LMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGN-SILHL  109 (136)
Q Consensus        32 g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~-t~l~~  109 (136)
                      +.++||+|+..|+.+++++| +.|++++.++..|.||+|.|+ .|+.+++++|+++|++      ++.++..+. ||||+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~------~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------PNCADPATLTRPVHD   75 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------CCCCCTTTCCCHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccc------ccccccccccccccc
Confidence            45899999999999999999 999999999999999999774 7999999999999998      668888776 69999


Q ss_pred             HHhcC-HHHHHHHHHhccCcc
Q 040650          110 AALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       110 a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      |+..| .+++++|+++|+++.
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~   96 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLD   96 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSS
T ss_pred             ccccccccccccccccccccc
Confidence            99999 999999999997754

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=4.4e-22  Score=132.03  Aligned_cols=97  Identities=20%  Similarity=0.128  Sum_probs=83.3

Q ss_pred             cccCCCCcHHHHHHHcCChhhHHH---h-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccc--
Q 040650           27 VEDNGLMTPLHRAAVDGDGGVITE---I-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATD--  100 (136)
Q Consensus        27 ~~~~~g~~~l~~a~~~~~~~~~~~---l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--  100 (136)
                      ..+..|.|||++|+..|+.+++++   | ..+++++.+|..|.||||+|+..|+.+++++|+++|++      ++..+  
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~------~~~~~~~  158 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT------EIMAMIQ  158 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT------THHHHHS
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------ccccccc
Confidence            446688999999999999887765   5 88999999999999999999999999999999999998      44544  


Q ss_pred             cCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650          101 KEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus       101 ~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      ..|+||||+|+..| .+++++|++.|+.+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~  188 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEA  188 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCccc
Confidence            56999999999999 999999999997654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.4e-21  Score=118.64  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=74.7

Q ss_pred             CCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcchhhhhcccccCCChHHHH
Q 040650           31 GLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHL  109 (136)
Q Consensus        31 ~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~  109 (136)
                      .+.++++.|+..+...+.+.+ ..+..++.+|..|.||||+|+..|+.+++++|+++|++      ++.+|..|+||||+
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad------~n~~d~~G~TpL~~  216 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMV  216 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCTTTT
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHH
Confidence            456788888888888888888 88888888899999999999999999999999999998      77999999999999


Q ss_pred             HHhcC-HHHHH
Q 040650          110 AALNK-LIVVK  119 (136)
Q Consensus       110 a~~~~-~~~~~  119 (136)
                      |+..| .++++
T Consensus       217 A~~~~~~divk  227 (228)
T d1k1aa_         217 ARSRRVIDILR  227 (228)
T ss_dssp             CSSHHHHHHHT
T ss_pred             HHhCCCccccC
Confidence            99999 88874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.6e-19  Score=114.25  Aligned_cols=124  Identities=23%  Similarity=0.240  Sum_probs=88.7

Q ss_pred             CchhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHH
Q 040650            1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDA   79 (136)
Q Consensus         1 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~   79 (136)
                      ||.|++.|+.+++++|+++|++++ ...+..|+||||+|+..|+.+++++| ..+......+..+.+|.+.+...+..+.
T Consensus         9 L~~Ai~~~~~e~vk~Ll~~G~din-~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (285)
T d1wdya_           9 LIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKL   87 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccc
Confidence            589999999999999999999998 23345799999999999999999999 7766655554444555555555444444


Q ss_pred             HHHHHHHh---------------------------------hhcc----hhhhhcccccCCChHHHHHHhcC-HHHHHHH
Q 040650           80 FKILMEET---------------------------------KRHN----LEHLFSATDKEGNSILHLAALNK-LIVVKIL  121 (136)
Q Consensus        80 ~~~Ll~~~---------------------------------~~~~----~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~L  121 (136)
                      ..++++..                                 .+.+    ........+..|.||||+|+..| .+++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  167 (285)
T d1wdya_          88 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  167 (285)
T ss_dssp             HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH
T ss_pred             cchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHH
Confidence            44444332                                 2211    11223344556889999999999 9999999


Q ss_pred             HHhc
Q 040650          122 MLRM  125 (136)
Q Consensus       122 l~~g  125 (136)
                      ++++
T Consensus       168 l~~~  171 (285)
T d1wdya_         168 LDEM  171 (285)
T ss_dssp             HHTS
T ss_pred             Hhcc
Confidence            8764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.7e-20  Score=107.81  Aligned_cols=96  Identities=25%  Similarity=0.242  Sum_probs=81.0

Q ss_pred             cHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHHHHHHHHhhhcc---------------------
Q 040650           34 TPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN---------------------   91 (136)
Q Consensus        34 ~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~---------------------   91 (136)
                      ++||+|+..|+.+++++| +.|++++.+|..|.||||+|+ .++.+++++|+++|++++                     
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            799999999999999999 999999999999999999885 789999999999998854                     


Q ss_pred             ------hhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCccc
Q 040650           92 ------LEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPVS  130 (136)
Q Consensus        92 ------~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~~  130 (136)
                            ....++..+..|.+|+++|+..+ .+++++|+++++.+.+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  127 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  127 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  22345566777888888888888 8888888888775443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.75  E-value=8e-18  Score=108.35  Aligned_cols=119  Identities=18%  Similarity=0.121  Sum_probs=97.5

Q ss_pred             hhcCChhhhhHhhccCCCCCcc-------cccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCC
Q 040650            5 LVEGDGEVVHFLGKLDLESRPV-------VEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQ   76 (136)
Q Consensus         5 ~~~~~~~~~~~ll~~~~~~~~~-------~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~   76 (136)
                      ++..+.+.++.........++.       ..+..+.|+|+.||..|+.+++++| +.|++++.+|..|.||||+|+..|+
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~   85 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN   85 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCC
Confidence            3444556666655543333210       1123356899999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcchhhhhcccccCCChHHHHHHhcC-HHHHHHHHHhccCcc
Q 040650           77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRMLYPV  129 (136)
Q Consensus        77 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~Ll~~g~~~~  129 (136)
                      .+++++|+++|.+      ....+..+.+||+.++..+ .++++.|+++|+...
T Consensus        86 ~eiv~~Ll~~~~~------~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~  133 (291)
T d1s70b_          86 VDMVKFLVENGAN------INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG  133 (291)
T ss_dssp             HHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             ceeeeeecccccc------cccccccccccccccccccccchhhcccccCcccc
Confidence            9999999999988      5688999999999999999 999999999997553

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=5.5e-18  Score=99.80  Aligned_cols=80  Identities=25%  Similarity=0.265  Sum_probs=75.0

Q ss_pred             chhhhcCChhhhhHhhccCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCHHHH
Q 040650            2 HKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQIDAF   80 (136)
Q Consensus         2 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   80 (136)
                      +.++...+.+++++++..+.+.+  ..+..|+||||+|+..|+.+++++| +.|++++.+|..|.||||+|+..|+.+++
T Consensus        72 ~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_          72 HMAASEGHANIVEVLLKHGADVN--AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccceeeecccccCCccc--cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            45778889999999999999888  8899999999999999999999999 99999999999999999999999999999


Q ss_pred             HHH
Q 040650           81 KIL   83 (136)
Q Consensus        81 ~~L   83 (136)
                      ++|
T Consensus       150 ~lL  152 (153)
T d1awcb_         150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            976

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=4.7e-16  Score=100.91  Aligned_cols=88  Identities=19%  Similarity=0.205  Sum_probs=68.2

Q ss_pred             cCCCCCcccccCCCCcHHHHHHHcCChhhHHHh-hcccCccccCCCCCcHHHHHHHhCCH---HHHHHHHHH-hhhcchh
Q 040650           19 LDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI-ASSESLAKLTSNDETALILAVKNSQI---DAFKILMEE-TKRHNLE   93 (136)
Q Consensus        19 ~~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l-~~~~~~~~~~~~~~t~l~~a~~~~~~---~~~~~Ll~~-~~~~~~~   93 (136)
                      .+.+++ ...|..|+||||+|+..|+.+++++| +.|++++.+|..|+||||.|+..++.   ..+..++.. ...    
T Consensus        95 ~~~dvn-~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~----  169 (301)
T d1sw6a_          95 TQLNLN-IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC----  169 (301)
T ss_dssp             SCCCSC-SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG----
T ss_pred             cCCCcC-cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh----
Confidence            344555 22388999999999999999999999 99999999999999999999987652   222333333 223    


Q ss_pred             hhhcccccCCChHHHHHHhc
Q 040650           94 HLFSATDKEGNSILHLAALN  113 (136)
Q Consensus        94 ~~~~~~~~~~~t~l~~a~~~  113 (136)
                        +..+|..|+||||+++..
T Consensus       170 --~~~~d~~g~t~lh~~~~~  187 (301)
T d1sw6a_         170 --LILEDSMNRTILHHIIIT  187 (301)
T ss_dssp             --GGEECTTCCCHHHHHHHH
T ss_pred             --hhhcccccCCHHHHHHHH
Confidence              557899999999988753