Citrus Sinensis ID: 040662

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MAGGIKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPPVRRSINLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHcccccccEEcccccHHHHHcccccccccccEEEccccccccccccccEEEEEEccccccccccccccccccccEEEEEccccccccccccccEEEEccccccccccccccccEEEEEEEEEccccccEEEEEEEccccccEEEEEEEccccccEEEEEccccccEEEEEEEccEEEEEEccccEEEEEEcccccEEEcccccccccccEEEEEEccEEEEEEEEcccccEEEEEEEcccccEEEcccccccEEEEccccEEccccccccccccEEEEcccccccccEEEEEccccccccccccccccccccccccccccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccccccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccEEEEccccccEccccccccEEEEcccccccccccccEEEEccccEEEEEccccccccccccccEEEEccccccEEcccccccccccEEEEEcccccccEEEEEEEEcccEEEEEEEEccccccEEEEcccccccccccEEEEccEEEEEEccccEEEEEccccccccccccccccccccEEEEEEccEEEEEEEEEcccEEEEEEEccccccEEEEEcccccEEEEEccEEEcccccccccccEEEEEccccccccccEEcccccEccccccccccccccccccccccccccEEEEcccccEEccc
Coil and Loop (DISEMBL)
maggikekkqklergswsdlpLEIINSIVSRLYVVYQIRFRAVCKRWRaadiqsrdkfpwlmgynshscylydpchkqkytvfnsdknrttllgarpldskhgwvlfegeknvnsggrkcsplffyspfadqiinlpawrEFSIAKatfsatpispdcVVFVTWVGIMEIscisicrpgdttwtelrfqdnYRYVKNLVCADGFLYCSFFSLEAIVAYNVAsqnleilpyppsiLFMYKYLTEYDGSLLIFgkvvdgsgyrvftfnrsqmdwfeieslddrvlftgasclwvpvekgsafantvhwfGRYSYIRDVCREFIrkpvesdsskvaprvrgyeyskeEEEYMTQiwiqppvrrsinln
Flexible Loop (DISEMBL)
maggikekkqklergswsdlpLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGarpldskhgwVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAtfsatpispDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIrkpvesdsskvaprvrgyeyskeeeeymtqiwiqppvrrsinln
Low Complexity Region (SEG)
MAGGIKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPPVRRSINLN
Disordered region (IsUnstruct)
****************WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRK************************YMTQIWIQ**********
Disordered Region (DISOPRED)
*********************LEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPPVRRSIN**
Disordered Region (DISEMBL)
**************GSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPPVRRSINLN
Disordered Region (DISPRO)
**************GSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPPVRRSINLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGGIKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPPVRRSINLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q9FVS1	352	F-box/kelch-repeat protei	yes	no	0.879	0.911	0.253	5e-19
Q9XIA2	481	F-box protein At1g49360 O	no	no	0.857	0.650	0.272	1e-17
Q9LSA5	380	F-box/kelch-repeat protei	no	no	0.739	0.710	0.245	8e-14
Q1G391	388	F-box protein At4g00893 O	no	no	0.797	0.75	0.250	3e-13
Q9LXZ3	367	F-box protein At3g56470 O	no	no	0.693	0.689	0.235	6e-11
Q1G3I7	138	F-box protein At4g12382 O	no	no	0.315	0.833	0.287	2e-06
Q9FKZ7	394	Putative F-box protein At	no	no	0.506	0.469	0.212	0.0002
Q9SUG4	363	Putative F-box protein At	no	no	0.194	0.195	0.337	0.0002
O49647	396	Putative F-box protein At	no	no	0.369	0.340	0.242	0.0003

>sp|Q9FVS1|FBK23_ARATH F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 154/359 (42%), Gaps = 38/359 (10%)

Query: 14  RGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGY--NSHSC 69
           +  W DLPLE+++S+++ L +   +R   VCK W  A +  R  DK PWLM +    ++ 
Sbjct: 10  KNLWKDLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWLMYFPETKNTY 69

Query: 70  YLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPF 129
             YDP + +KYT+    +   +L+G     SK GW+L   E +        S    ++PF
Sbjct: 70  DFYDPSNCKKYTM----ELPKSLVGFIVRYSKDGWLLMSQEDS--------SHFVLFNPF 117

Query: 130 ADQIINLPAWREFSIAKAT-FSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRF 188
              ++ LP    F+  +   FS+ P S +CVVF           I    PG T WT ++ 
Sbjct: 118 TMDVVALPFLHLFTYYQLVGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWTSMQV 177

Query: 189 QDNYRYV--KNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPP------SILFMYKY 240
           +  +  V   N+V ++G  YC       +  ++ + +   +L  PP            K+
Sbjct: 178 ESQFLDVDHNNVVFSNGVFYC-LNQRNHVAVFDPSLRTWNVLDVPPPRCPDDKSWNEGKF 236

Query: 241 LTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTG-ASCLWVPVEKGSA 299
           +  Y G +L+  +  +     VF  + ++  W E ++L    +F    SC      K   
Sbjct: 237 MVGYKGDILVI-RTYENKDPLVFKLDLTRGIWEEKDTLGSLTIFVSRKSCESRTYVKDGM 295

Query: 300 FANTVHWFGRYSYIRDVCREFIRKPVES-DSSKVAPRVRGYEYSKEEEEYMTQIWIQPP 357
             N+V       Y  ++C    +  V S D  +   R    ++ K+       IWI+PP
Sbjct: 296 LRNSV-------YFPELCYNEKQSVVYSFDEGRYHLREHDLDWGKQLSS--DNIWIEPP 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIA2|FB49_ARATH F-box protein At1g49360 OS=Arabidopsis thaliana GN=At1g49360 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 171/382 (44%), Gaps = 69/382 (18%)

Query: 20  LPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPWLMGYNSH-----SCYLY 72
           LP +++  I+SRL     IR   VCK W   AA ++ + +  WL+ +++      S   +
Sbjct: 111 LPSDLVRLILSRLSFKDNIRSSTVCKAWGDIAASVRVKSRRCWLLYHDAFQDKGVSYGFF 170

Query: 73  DPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQ 132
           DP  K+K    N  +   +   +  L SK GW+L      +N      + ++F++PF  +
Sbjct: 171 DPVEKKKTKEMNLPELSKS---SGILYSKDGWLL------MNDSLSLIADMYFFNPFTRE 221

Query: 133 IINLPAWR--EFSIAKATFSATPISPDCVVFVTWVGIMEISC-----ISICRPGDTTWTE 185
            I+LP  R  E       FS  P    C+VF    GI  IS      IS  RPG TTW  
Sbjct: 222 RIDLPRNRIMESVHTNFAFSCAPTKKSCLVF----GINNISSSVAIKISTWRPGATTWLH 277

Query: 186 LRFQD----NYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILF--MYK 239
             F +     +R + N++ +DG  Y +  S  A+  ++  ++   +LP  P  +     +
Sbjct: 278 EDFPNLFPSYFRRLGNILYSDGLFYTA--SETALGVFDPTARTWNVLPVQPIPMAPRSIR 335

Query: 240 YLTEYDGSLLIFGKVVDGSGYR--VFTFNRSQMDWFEIESLDDRVLF-TGASCLWVPVEK 296
           ++TEY+G + +    VD S     V+  NR +  W + E+LD   +F +  SC+      
Sbjct: 336 WMTEYEGHIFL----VDASSLEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVMTYGLT 391

Query: 297 GSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYS-------KEEE--- 346
           GS  +N ++++ R          FI +   + S     R   Y+YS       ++ E   
Sbjct: 392 GS-MSNILYFWSR----------FINERRSTKSPCPFSRNHPYKYSLYSRSSCEDPEGYY 440

Query: 347 -EYMT-----QIWIQPPVRRSI 362
            EY+T      +WI+PP   SI
Sbjct: 441 FEYLTWGQKVGVWIEPPHSISI 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSA5|FBK62_ARATH F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana GN=At3g18720 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 127/309 (41%), Gaps = 39/309 (12%)

Query: 3   GGIKEKKQKLERGSWS-DLPLEIINSIVSRLYVVYQIRFRAVCKRW--RAADIQSRDKFP 59
           GG K+KK  + RG W   +P +++  I+SRL +   I    VCK W   A  ++     P
Sbjct: 34  GGPKKKKNCVNRGLWDKQIPTDLLQEILSRLGLKANIHASLVCKTWLKEAVSVRKFQSRP 93

Query: 60  WLMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLD--------SKHGWVLFEGEK 111
           WL    S          +  Y +FN  +++T  L    L         +K GW+L   + 
Sbjct: 94  WLFYPQSQR----GGPKEGDYVLFNPSRSQTHHLKFPELTGYRNKLACAKDGWLLVVKDN 149

Query: 112 NVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA-TFSATPISPDCVV--FVTWVGIM 168
                      +FF +PF  + I LP   + S     TFSA P S  C V  F     + 
Sbjct: 150 P--------DVVFFLNPFTGERICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLY 201

Query: 169 EISCISICRPGDTTWTELRFQDNYRY---VKNLVCADGFLYCSFFSLEAIVAYNVASQNL 225
            +  +   RPG++ WT   F D  RY   +   + ++G  YC   +   +  ++ + +  
Sbjct: 202 AVVKVDTWRPGESVWTTHHF-DQKRYGEVINRCIFSNGMFYC-LSTSGRLSVFDPSRETW 259

Query: 226 EILPYPPSILFMYK-------YLTEYDGSLLIF-GKVVDGSGYRVFTFNRSQMDWFEIES 277
            +LP  P   F  K       ++TE++G + +   + V+      F  N     W E++ 
Sbjct: 260 NVLPVKPCRAFRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKV 319

Query: 278 LDDRVLFTG 286
            +   +F+ 
Sbjct: 320 PNGLTVFSS 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G391|FB217_ARATH F-box protein At4g00893 OS=Arabidopsis thaliana GN=At4g00893 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 134/343 (39%), Gaps = 52/343 (15%)

Query: 5   IKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLM 62
            ++  +K+   S++DLP  +I  I+  L +   IR  A CK W  A +  R  DK PWLM
Sbjct: 33  FQDSSKKIMNPSFADLPSSLIEEIMLLLVLKDNIRASAACKSWYEAGVSVRVVDKHPWLM 92

Query: 63  GYNSHSCY--LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKC 120
            +          DP H + +T+   +   +T+  +R      GW+L     + +      
Sbjct: 93  CFPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSR-----FGWLLMRKASSND------ 141

Query: 121 SPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEIS--CISICRP 178
             +FF++PF+  II+LP   E    +  FS  P S DCV+        E++   +S C P
Sbjct: 142 --VFFFNPFSRDIISLPMC-ELDFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTVSTCNP 198

Query: 179 GDTTWTELRFQDNYRYV---KNLVCADGFLYC-----SFFSLE-AIVAYNVASQNLEILP 229
           G T W    F    R      NLV      YC     + +S E +   ++    +    P
Sbjct: 199 GATKWITNDFPTFLRLFYMQSNLVYRRDRFYCFNAEGTLYSFEPSYREWSYICADKLRCP 258

Query: 230 YPPSILFMY----KYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIE--SLDDRVL 283
           Y     +M+     +L E  G L +   +   S  +   +    M W E+   +LD    
Sbjct: 259 YVHENQYMWCGKAVFLVEKKGELFV---MFTCSNEKPMVYKLFSMKWKELSRTTLDGMTF 315

Query: 284 FTGASCLWVPVEKGSAFANTVHW------FGRYSYIRDVCREF 320
           F             S   N + W      F R+ Y R  C  F
Sbjct: 316 FVSF--------YNSELRNNLPWMRNNVYFSRFGYNRKHCVSF 350

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470 OS=Arabidopsis thaliana GN=At3g56470 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 120/280 (42%), Gaps = 27/280 (9%)

Query: 19  DLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGYN--SHSCYLYDP 74
           +LP +++  ++SRL +   IR  AVCK W  A +  R     PWL+ ++    S  LYDP
Sbjct: 31  NLPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLRVIHTSPWLIYFSKTDDSYELYDP 90

Query: 75  CHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQII 134
             ++     N + +   L G R   SK GW+L     +          L F++PF    +
Sbjct: 91  SMQK-----NCNLHFPELSGFRVCYSKDGWLLMYNPNSYQ--------LLFFNPFTRDCV 137

Query: 135 NLPA-WREFSIAKATFSATPISPDCVVF----VTWVGIMEISCISICRPGDTTWTELRFQ 189
            +P  W  +   +  FS  P S  C++F    VTW  I   +  +  +   T+  + R Q
Sbjct: 138 PMPTLWMAYD-QRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANAKEWKTSVFKNRLQ 196

Query: 190 DNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILFMYK--YLTEYDGS 247
            N+   + +V ++G  YC   +   +  ++ +     +LP  P         ++TE+ G 
Sbjct: 197 RNFNTFEQIVFSNGVFYC-LTNTGCLALFDPSLNYWNVLPGRPPKRPGSNGCFMTEHQGE 255

Query: 248 LLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGA 287
           + +   +       V   + +  +W E ++L    ++  A
Sbjct: 256 IFLI-YMYRHMNPTVLKLDLTSFEWAERKTLGGLTIYASA 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q1G3I7|FB232_ARATH F-box protein At4g12382 OS=Arabidopsis thaliana GN=At4g12382 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)

Query: 10  QKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGYNSH 67
           +K+   S++DLP  +I  I+S L +   IR  A CK W    +  R  +K PWL+ +   
Sbjct: 3   KKIMNPSFADLPSSLIEVIMSHLALKNNIRASAACKSWYEVGVSVRVVEKHPWLICFPKR 62

Query: 68  SCY--LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFF 125
                  DP H + YT+   +   +T+  +R      GW+L     + +        +FF
Sbjct: 63  GNLFEFRDPLHWKLYTLGLPELAESTVCYSR-----FGWLLMRKATSKD--------VFF 109

Query: 126 YSPFADQIINLP 137
           ++PF+  II+LP
Sbjct: 110 FNPFSRDIISLP 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ7|FB301_ARATH Putative F-box protein At5g66830 OS=Arabidopsis thaliana GN=At5g66830 PE=4 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 13/198 (6%)

Query: 17  WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAA--DIQSRDKFPWLMGY--NSHSCYLY 72
           WS LP +++  +  RL      R ++VC  W +   + Q  ++ PW++ +  +++ C L+
Sbjct: 20  WSKLPSDLMQFVFDRLGFADFQRAKSVCSSWLSVSRNSQPNNQIPWMIRFPKDNNHCLLF 79

Query: 73  DPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLF--EGEKNVNSGGRKCSPLFFYSPFA 130
           +P  + K  ++ +         +  + S   W+L   E E        +C+ L+      
Sbjct: 80  NPEEEDK--MYKTPNLGNDFAKSSCIASYGSWLLMQPESEYMEEDLDHQCNNLYILDLLT 137

Query: 131 DQIINLPAWR-EFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQ 189
            + INLP  + EF +          S D +V    +G+         + GD++W ++   
Sbjct: 138 RERINLPILQPEFGLTCPILWTDEKSKDHLV----IGMAHEELAISFKKGDSSWKQIPTL 193

Query: 190 DNYRYVKNLVCADGFLYC 207
                  ++V  D  LYC
Sbjct: 194 SGIEECFSMVFKDHKLYC 211

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUG4|FB241_ARATH Putative F-box protein At4g22170 OS=Arabidopsis thaliana GN=At4g22170 PE=4 SV=2

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 9  KQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS--RDKFPWLMGY-- 64
          ++K    SWSDLP +++N +  RL      R R+VC  W +A  QS  +++  WL+ +  
Sbjct: 2  ERKHNPNSWSDLPHDLLNLVFERLSFANFNRARSVCSSWYSASRQSVPKNQIHWLILFPE 61

Query: 65 -----NSHSCYLYDPCHKQK 79
               N+ SC L++P  K K
Sbjct: 62 DNNNKNNSSCTLFNPDEKDK 81

Arabidopsis thaliana (taxid: 3702)

>sp|O49647|FB246_ARATH Putative F-box protein At4g22660 OS=Arabidopsis thaliana GN=At4g22660 PE=4 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 22/157 (14%)

Query: 15  GSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS--RDKFPWLMGY-------- 64
            +WSDLPL+++N +  RL      + ++VC  W +A  QS  +++ PWLM +        
Sbjct: 8   NTWSDLPLDLLNLVFKRLSFANFRQAKSVCSSWYSASKQSVPKNQIPWLMLFPKDKNNNK 67

Query: 65  NSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLF 124
           NS     ++P  K +  ++ +         +  L +   W+L +  K           L+
Sbjct: 68  NSSCTIFFNPEDKDQ--LYQTQDLGVEFAKSVCLATYGSWLLMQDSK---------YNLY 116

Query: 125 FYSPFADQIINLPAWREFSIAKATFSATPISPDCVVF 161
             +PF  + I LPA     +       T I  D + F
Sbjct: 117 ILNPFTYEKIGLPAIESQQVGMVKVDQT-IDDDFLTF 152

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
359806246	376	uncharacterized protein LOC100809651 [Gl	0.904	0.877	0.273	4e-29
356572568	376	PREDICTED: F-box/kelch-repeat protein At	0.890	0.864	0.279	1e-28
255636866	376	unknown [Glycine max]	0.890	0.864	0.279	4e-28
356548441	376	PREDICTED: F-box/kelch-repeat protein At	0.904	0.877	0.262	7e-27
356505380	377	PREDICTED: F-box/kelch-repeat protein At	0.890	0.862	0.277	1e-26
388513169	376	unknown [Medicago truncatula]	0.890	0.864	0.258	7e-26
255578937	376	transcription regulation, putative [Rici	0.890	0.864	0.275	3e-25
224140101	344	predicted protein [Populus trichocarpa]	0.849	0.901	0.272	2e-24
147834369	404	hypothetical protein VITISV_038350 [Viti	0.909	0.821	0.283	2e-23
225440866	376	PREDICTED: F-box/kelch-repeat protein At	0.871	0.845	0.273	1e-22

>gi|359806246|ref|NP_001241212.1| uncharacterized protein LOC100809651 [Glycine max] gi|255641457|gb|ACU21004.1| unknown [Glycine max]

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 170/373 (45%), Gaps = 43/373 (11%)

Query: 3   GGIKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPW 60
             ++ + + LE  +WSDLP E++  I+SRL +   +R   VCKRW   A  +   ++ PW
Sbjct: 22  ASVEVENEYLELQTWSDLPTELLELILSRLSLDDNVRASVVCKRWHSVATSVCVVNQSPW 81

Query: 61  LMGYNSHSCY--LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGR 118
           LM +     +   YDP H++ Y++         L G+R   +K GW+L    +       
Sbjct: 82  LMYFPKFGDWYEFYDPAHRKTYSI-----ELPELRGSRVCYTKDGWLLLYRPRTHR---- 132

Query: 119 KCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRP 178
               +FF++PF  +II LP + E S     FS  P SPDCV+F        +  IS C P
Sbjct: 133 ----VFFFNPFTMEIIKLPRF-EMSYQIVAFSCAPTSPDCVLFTVKHVSPTVVAISTCYP 187

Query: 179 GDTTWTELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPS 233
           G T WT L +Q+   +V +    LV  +G  YC   SL   +  +N + +   +L  PP 
Sbjct: 188 GATEWTTLSYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFNSSERTWSVLSVPPP 245

Query: 234 IL---------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLF 284
                      +  K++TE++G +++           +F  ++  M+W E+ +LD   LF
Sbjct: 246 KCPENFFAKNWWKGKFMTEHEGDIIVI-YTCSSENPIIFKLDQMLMEWEEMTTLDGVTLF 304

Query: 285 TGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKE 344
                    ++      N+V+ F +  +    C  F       D  +  PR + +++   
Sbjct: 305 ASFLSSHARIDLPGIMRNSVY-FSKVRFYGKRCISF-----SLDDCRYYPRKQWHDWG-- 356

Query: 345 EEEYMTQIWIQPP 357
           E++    IWI+PP
Sbjct: 357 EQDPFENIWIEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572568|ref|XP_003554440.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 170/368 (46%), Gaps = 43/368 (11%)

Query: 8   KKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPWLMGYN 65
           K + LE  SW+DLP E++ SI+SRL +   IR  AVC+RW   A+D++  ++ PWLM + 
Sbjct: 27  KSENLEMQSWADLPAELLESILSRLILADNIRASAVCRRWHSVASDVRVVNQSPWLMYFP 86

Query: 66  SHS-CY-LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPL 123
               CY  YDP  ++ +T    + N     G+R   +K GW+L    +           +
Sbjct: 87  KFGDCYEFYDPVQRKTHTFELPELN-----GSRVCYTKDGWLLLYRPRTHR--------V 133

Query: 124 FFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTW 183
           FF++PF  ++I LP + E +     FS  P SP CV+F        +  IS C PG T W
Sbjct: 134 FFFNPFTRELIKLPRF-EMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEW 192

Query: 184 TELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPSIL--- 235
           T + +Q+   +V +    LV  +G  YC   SL   +  ++       +L  PP      
Sbjct: 193 TTVNYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPVECTWSVLAVPPPKCPEN 250

Query: 236 ------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASC 289
                 +  K++TE++G +L+       +   +F  +++ M W E+ +LD   LF     
Sbjct: 251 FFAKNWWKGKFMTEHEGDILVIYTCCSENPI-IFKLDQTLMKWEEMTTLDGVTLFASFLS 309

Query: 290 LWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYM 349
                +      N+V+ F +  +    C  F       D  +  PR + +++   E++  
Sbjct: 310 SHSRTDLIGIMRNSVY-FSKVRFYGKRCISF-----SLDDYRYYPRKQCHDWG--EQDPF 361

Query: 350 TQIWIQPP 357
             IWI+PP
Sbjct: 362 ENIWIEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636866|gb|ACU18766.1| unknown [Glycine max]

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 169/368 (45%), Gaps = 43/368 (11%)

Query: 8   KKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPWLMGYN 65
           K + LE  SW+DLP E++ SI+SRL +   IR  AVC+RW   A+D++  ++ PWLM + 
Sbjct: 27  KSENLEMQSWADLPAELLESILSRLILADNIRASAVCRRWHSVASDVRVVNQSPWLMYFP 86

Query: 66  SHS-CY-LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPL 123
               CY  YDP  ++ +T    + N     G+R   +K GW+L    +           +
Sbjct: 87  KFGDCYEFYDPVQRKTHTFELPELN-----GSRVCYTKDGWLLLYRPRTHR--------V 133

Query: 124 FFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTW 183
           FF++PF  ++I LP + E       FS  P SP CV+F        +  IS C PG T W
Sbjct: 134 FFFNPFTRELIKLPRF-EMIYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEW 192

Query: 184 TELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPSIL--- 235
           T + +Q+   +V +    LV  +G  YC   SL   +  ++       +L  PP      
Sbjct: 193 TTVNYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPVECTWSVLAVPPPKCPEN 250

Query: 236 ------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASC 289
                 +  K++TE++G +L+       +   +F  +++ M W E+ +LD   LF     
Sbjct: 251 FFAKNWWKGKFMTEHEGDILVIYTCCSENPI-IFKLDQTLMKWEEMTTLDGVTLFASFLS 309

Query: 290 LWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYM 349
                +      N+V+ F +  +    C  F       D  +  PR + +++   E++  
Sbjct: 310 SHSRTDLIGIMRNSVY-FSKVRFYGKRCISF-----SLDDYRYYPRKQCHDWG--EQDPF 361

Query: 350 TQIWIQPP 357
             IWI+PP
Sbjct: 362 ENIWIEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548441|ref|XP_003542610.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 170/373 (45%), Gaps = 43/373 (11%)

Query: 3   GGIKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPW 60
             ++ + + LE  +WSDLP E++  I+SRL +   +R   VCKRW   A  +   ++ PW
Sbjct: 22  AAVEVENENLELQTWSDLPTELLELILSRLSLDDNVRASVVCKRWHSVATSVCVVNQSPW 81

Query: 61  LMGYNSHSCY--LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGR 118
           LM +     +   YDP H++ Y++         L G+R   +K GW+L    +       
Sbjct: 82  LMYFPKFGDWYEFYDPVHRKTYSI-----ELPELSGSRVCYTKDGWLLLYRPRTHR---- 132

Query: 119 KCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRP 178
               +FF++PF  +II LP + E S     FS  P S DCV+F        +  IS C P
Sbjct: 133 ----VFFFNPFTQEIIKLPRF-EMSYQIVAFSCAPTSSDCVLFTVKHVSPTVVAISTCYP 187

Query: 179 GDTTWTELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPS 233
           G T WT + +Q+   +V +    LV  +G  YC   SL   +  ++ + +   +L  PP 
Sbjct: 188 GATEWTTVSYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDSSERTWSVLSVPPP 245

Query: 234 IL---------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLF 284
                      +  K++TE++G +++     + +   +F  + + ++W E+ +LD   LF
Sbjct: 246 KCPENFFAKNWWKGKFMTEHEGDIIVIYTCSNENPI-IFKLDLTLLEWEEMTTLDGVTLF 304

Query: 285 TGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKE 344
                     +      N+V +F +  +    C  F       D  +  PR + +++   
Sbjct: 305 ASFLSSHARTDLHGIMRNSV-FFSKVRFYGKRCISF-----SLDGYRYYPRKQWHDWG-- 356

Query: 345 EEEYMTQIWIQPP 357
           E++    IWI+PP
Sbjct: 357 EQDPFENIWIEPP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505380|ref|XP_003521469.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Glycine max]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 166/368 (45%), Gaps = 43/368 (11%)

Query: 8   KKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPWLMGYN 65
           K + LE  SW+DLP E++ SI+SRL +V  IR  +VCKRW   A+D++  ++ PWLM + 
Sbjct: 28  KTENLELQSWADLPAELLESILSRLILVDNIRASSVCKRWHSVASDVRVVNQSPWLMYFP 87

Query: 66  SHS-CY-LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPL 123
               CY  YDP   +  T    + N     G+R   +K GW+L    +           +
Sbjct: 88  KFGDCYEFYDPVQHKTLTFELPELN-----GSRVCYTKDGWLLLYRPRTHR--------V 134

Query: 124 FFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTW 183
           FF++PF  ++I LP + E +     FS  P SP CV+F        +  IS C PG T W
Sbjct: 135 FFFNPFTRELIKLPRF-EMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEW 193

Query: 184 TELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPSIL--- 235
           T + +Q+   +V +    LV  +G  YC   SL   +  ++       +L  PP      
Sbjct: 194 TTVNYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPVECTWSVLAVPPPKCPEN 251

Query: 236 ------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASC 289
                 +  K++ E++G +L+       +   +F  +++ M W E+ +LD   LF     
Sbjct: 252 FFAKNWWKGKFMAEHEGDILVIYTCCSENPI-IFKLDQTLMKWEEMTTLDGVTLFASFLS 310

Query: 290 LWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYM 349
                +      N+V+ F +  +    C  F          +  PR + +++   E +  
Sbjct: 311 SHSRTDLIGIMRNSVY-FSKVRFYGKRCISF-----SLGDYRYYPRKQCHDWG--EHDPF 362

Query: 350 TQIWIQPP 357
             IWI+PP
Sbjct: 363 ENIWIEPP 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513169|gb|AFK44646.1| unknown [Medicago truncatula]

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 166/368 (45%), Gaps = 43/368 (11%)

Query: 8   KKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPWLMGYN 65
           K   LE  +W+DLP E++  I+SRL +   +R  AVCK W   A  ++  ++ PWLM + 
Sbjct: 27  KNDNLELQTWADLPAELLEMIISRLALEDNVRASAVCKSWNFVANAVRMVNQSPWLMYFP 86

Query: 66  SHSCY--LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPL 123
               +   YDP  ++ Y++   + N     G+R   +K GW+L    +           +
Sbjct: 87  KFGQWYEFYDPVQRKTYSIEFPELN-----GSRVCYTKDGWLLLYRPRT--------DRV 133

Query: 124 FFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTW 183
           FF++PF  + I +P + E +     FS  P SPDCV+F        I  IS C PG T W
Sbjct: 134 FFFNPFTRETIKMPRF-EMTYQIVAFSCAPTSPDCVLFTVKHVSPTIVAISTCHPGATEW 192

Query: 184 TELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPSIL--- 235
             + +Q+   +V +    LV  +G  YC   SL   +  ++ + +   +L  PP      
Sbjct: 193 VTVNYQNRLPFVSSIWNKLVFCNGLFYC--LSLTGWLGVFDPSERTWSVLSVPPPKCPEN 250

Query: 236 ------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASC 289
                 +  K++TE +G +++           +F  +++ M+W E+++LD   LF     
Sbjct: 251 FFAKNWWKGKFMTEQEGDVIVM-YTCSSENPIIFKLDQASMEWEELKTLDGATLFASFLS 309

Query: 290 LWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYM 349
                +      N+++ F +  +    C  F       D  +  PR + +++   E++  
Sbjct: 310 SHSRTDLLGNMRNSIY-FSKVRFYGKRCISF-----SLDDYRYYPRKQWHDWG--EQDPF 361

Query: 350 TQIWIQPP 357
             IWI+PP
Sbjct: 362 ESIWIEPP 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578937|ref|XP_002530321.1| transcription regulation, putative [Ricinus communis] gi|223530125|gb|EEF32037.1| transcription regulation, putative [Ricinus communis]

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 53/378 (14%)

Query: 3   GGIKEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPW 60
             I   K  LE  +WSDLP+E++  I   L +   I    VCKRW  A I  R  +K PW
Sbjct: 22  ATINNIKDNLELQTWSDLPIELLELIFCHLTLEDNIHASVVCKRWHTAAISVRVVNKSPW 81

Query: 61  LMGYNSHSCY--LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGR 118
           LM +  +      YDP  ++ Y++         L  +R   +K GW+L            
Sbjct: 82  LMYFPKYGNLYEFYDPAQRKTYSL-----ELPELYWSRICYTKDGWLLLYRPIT------ 130

Query: 119 KCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRP 178
               +FF++PF  ++I LP + E +     FS++P +  CVVF        I  IS C P
Sbjct: 131 --HRVFFFNPFTKKMIKLPRF-ELTYQIVAFSSSPTNASCVVFTVKHISPTIVAISTCHP 187

Query: 179 GDTTWTELRFQDNYRYVKN----LVCADGFLYC-SFFSLEAIVAYNVASQNLEILPYP-- 231
           G T W  + +Q+   +V +    +V   G  YC S      +      + N+ ++P P  
Sbjct: 188 GATEWVTVNYQNRLPFVSSIWNKIVFCSGLFYCLSLTGWLGVFDPVERTWNVLVVPPPKC 247

Query: 232 PSILFMY-----KYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLF-- 284
           P   F       K+++E++G +L+       +   +F  N+S M W E+++LD   LF  
Sbjct: 248 PENFFAKNWWKGKFMSEHNGDILVIYTCCSENPI-IFKLNKSNMTWEEMKTLDGVTLFAS 306

Query: 285 --TGASCLWVP-VEKGSAFANTVHWFGR--YSYIRDVCREFIRKPVESDSSKVAPRVRGY 339
             +  S   +P + + S + + V +FG+   SY  D CR +             PR + +
Sbjct: 307 FLSSHSRTDLPGIMRNSIYFSKVRFFGKRCISYSLDDCRYY-------------PRKQCH 353

Query: 340 EYSKEEEEYMTQIWIQPP 357
           ++   E++    IWI+PP
Sbjct: 354 DWG--EQDPFENIWIEPP 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140101|ref|XP_002323425.1| predicted protein [Populus trichocarpa] gi|222868055|gb|EEF05186.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 168/367 (45%), Gaps = 57/367 (15%)

Query: 16  SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGYNSHSCY--L 71
           +WSDLP+E++  I  RL +   IR    CKRW  A I  R  +  PWLM +         
Sbjct: 3   TWSDLPIELLELIFCRLSLEDNIRSSIACKRWNTAAISVRVVNHSPWLMYFPKFGNMYEF 62

Query: 72  YDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFAD 131
           YDP  ++ Y++         L G+R   +K GW+L    +         + +FF++PF+ 
Sbjct: 63  YDPAQRKTYSL-----ELPELYGSRVCYTKDGWLLLYRPRT--------NRVFFFNPFSR 109

Query: 132 QIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDN 191
           +++ LP + E +     FS  P S  CVVF        I  IS C PG T W  + +Q+ 
Sbjct: 110 EVVKLPRF-ELTYQIVAFSCAPTSNTCVVFTVRHISPTIVAISTCHPGATEWVTVNYQNR 168

Query: 192 YRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEILPYPPSIL---------FM 237
             +V +    +V  +GF YC   SL   +  ++       +L  PP            + 
Sbjct: 169 LPFVSSIWNKIVFCNGFFYC--LSLTGWLGVFDPLEHTWSVLAVPPPKCPENFFAKNWWK 226

Query: 238 YKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLF----TGASCLWVP 293
            K+++E++G +L+       +   +F  ++S+M W E+++LD   LF    +  S   +P
Sbjct: 227 GKFMSEHNGDILVIYTCCSENPI-IFKLDQSKMFWREMKTLDGMTLFASFLSSHSRSDLP 285

Query: 294 -VEKGSAFANTVHWFGR--YSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMT 350
            + + S + + V +FG+   SY  D CR +             PR + +++   E++   
Sbjct: 286 GMMRNSVYFSKVRFFGKRCISYSLDDCRYY-------------PRKQCHDWG--EQDPFE 330

Query: 351 QIWIQPP 357
            IWI+PP
Sbjct: 331 NIWIEPP 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834369|emb|CAN69847.1| hypothetical protein VITISV_038350 [Vitis vinifera]

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 161/395 (40%), Gaps = 63/395 (15%)

Query: 11  KLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAA---DIQSRDKFPWLMGY--- 64
           ++E   WSDLP ++I SI+ RLYV  ++R R VCK W       I++ DK PW M Y   
Sbjct: 22  EIETRPWSDLPQDLIVSIMERLYVADRVRLRGVCKDWHLQPNRGIKAIDKLPWTMEYKWR 81

Query: 65  NSHS------CYLYDPCHKQKYTVFNSDKNRT----TLLGARPLDSKHGWVLFEGEKNVN 114
           N  S      C LY+P H  +   +  +K R              S++ WVLF   K+  
Sbjct: 82  NPKSISFWSVCKLYEPLHHNRRLSYMVEKGRMRGRKNFAKGEVRASRYSWVLF--YKDDY 139

Query: 115 SGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCIS 174
             G+     FF++PF  ++I LP +       ATFS  P SP C VFV +        I+
Sbjct: 140 WQGK----FFFFNPFTKEVIFLPCFESPVSEFATFSLAPTSPHCFVFVPYERNYNEISIN 195

Query: 175 ICRPGDTTWTELRFQDNYRYVKNLVCA---DGFLYCSFFSLEAIVAYNVASQNLEI---- 227
           I    D TW       N   +  L      +G  YC F S   + A+N+A Q L +    
Sbjct: 196 IYSHADKTWKTHDLVANDHPLGTLKAVGYMEGTFYCHFSSFH-LAAFNIADQELSLVMTT 254

Query: 228 ---LPYPPSILFMY---KYLTEYDGSLL---IFGKVVDGSGYRVFTFNRSQMDWFEIESL 278
              + +    LF Y    YL E +G LL   +F  +       V   + S+ +W  +  L
Sbjct: 255 CPAMDHLDDSLFNYFSRSYLLECEGDLLLVYLFESLSCWHQLYVLKLDWSRNEWVRVSRL 314

Query: 279 DDRVLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRKPV------------- 325
             R +F G +   V     SA   T     R  Y  D   EF    +             
Sbjct: 315 GGRAMFLGETSFCV-----SAGGETEIIANRIYYHHDGVPEFQTLDLCSFDEYDSRDHDY 369

Query: 326 ---ESDSSKVAPRVRGYEYSKEEEEYMTQIWIQPP 357
              + +  + A   + Y Y ++    +  IWIQPP
Sbjct: 370 LTWQKEKKREAGNGKIYGYCRKS---LKTIWIQPP 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440866|ref|XP_002276543.1| PREDICTED: F-box/kelch-repeat protein At1g57790-like [Vitis vinifera]

 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 169/377 (44%), Gaps = 59/377 (15%)

Query: 7   EKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGY 64
           EK   LE  SWSDLP E++  I+S L +   IR  AVCKRW +  I +R  ++ PW+M +
Sbjct: 26  EKAVTLELQSWSDLPAELLELIMSCLTLEENIRASAVCKRWYSVAIATRVVNQTPWIMFF 85

Query: 65  N--SHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSP 122
                +   YDP  ++ Y +     +   L G+R   +  GW+L    +           
Sbjct: 86  PKVGDTYEFYDPLQRETYCI-----DLPELCGSRVCSTIDGWLLLYRPRTHR-------- 132

Query: 123 LFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTT 182
           +FF++PF  + I LP + E S    + SA P S  C+VF        +  IS C  G T 
Sbjct: 133 VFFFNPFTRESIKLPRY-EMSYQIVSVSAAPTSASCIVFTIKHISPTVVAISTCHAGATE 191

Query: 183 WTELRFQDNYRYVKN----LVCADGFLYCSFFSLEA-IVAYNVASQNLEIL----PYPPS 233
           WT +  Q+   +V +    LV  +G  YC   SL   +  ++   ++ ++L    P  P 
Sbjct: 192 WTTVNHQNRLPFVSSIWNKLVYCNGLFYC--LSLTGWLGVFDPDDRSWDVLSIHPPKCPE 249

Query: 234 ILFMY-----KYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFT--- 285
             F       K++ E+ G L +           VF  +R+++ W E+++LD   +F    
Sbjct: 250 NFFTKNWWKGKFMLEHQGELFVI-YTCSTENPIVFKLDRNKLVWEEMKTLDGMTIFASFL 308

Query: 286 ---GASCLWVPVEKGSAFANTVHWFGR--YSYIRDVCREFIRKPVESDSSKVAPRVRGYE 340
              G + L   + + + F + V ++G+   SY  D CR +             PR + ++
Sbjct: 309 SSHGRNDL-PGIMRNNVFFSKVRFYGKRCISYSLDDCRYY-------------PRKQYHD 354

Query: 341 YSKEEEEYMTQIWIQPP 357
           +   E++    IWI PP
Sbjct: 355 WG--EQDPFESIWIVPP 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2009430	352	AT1G57790 "AT1G57790" [Arabido	0.871	0.903	0.258	1e-22
TAIR|locus:2010172	481	AT1G49360 "AT1G49360" [Arabido	0.876	0.665	0.274	8.6e-19
TAIR|locus:504955409	234	AT4G10695 "AT4G10695" [Arabido	0.526	0.820	0.305	2.1e-17
TAIR|locus:4010713853	388	AT4G00893 [Arabidopsis thalian	0.802	0.755	0.274	2.6e-15
TAIR|locus:2139207	317	AT4G10660 "AT4G10660" [Arabido	0.443	0.511	0.316	1.9e-14
TAIR|locus:2102519	367	AT3G56470 "AT3G56470" [Arabido	0.728	0.724	0.252	2.4e-14
TAIR|locus:2094004	380	AT3G18720 "AT3G18720" [Arabido	0.736	0.707	0.259	3.7e-14
TAIR|locus:4515103379	138	AT4G12382 "AT4G12382" [Arabido	0.345	0.913	0.291	3.3e-08
TAIR|locus:2139064	300	AT4G12370 "AT4G12370" [Arabido	0.726	0.883	0.246	2.8e-07
TAIR|locus:2037191	347	AT1G44080 [Arabidopsis thalian	0.802	0.844	0.252	8.9e-07

TAIR|locus:2009430 AT1G57790 "AT1G57790" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 92/356 (25%), Positives = 154/356 (43%)

Query:    17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGY-NSHSCY-LY 72
             W DLPLE+++S+++ L +   +R   VCK W  A +  R  DK PWLM +  + + Y  Y
Sbjct:    13 WKDLPLELLSSVMTFLEIKDNVRASVVCKSWFEAAVSVRVIDKSPWLMYFPETKNTYDFY 72

Query:    73 DPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQ 132
             DP + +KYT+    +   +L+G     SK GW+L   E +        S    ++PF   
Sbjct:    73 DPSNCKKYTM----ELPKSLVGFIVRYSKDGWLLMSQEDS--------SHFVLFNPFTMD 120

Query:   133 IINLPAWREFSIAKAT-FSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDN 191
             ++ LP    F+  +   FS+ P S +CVVF           I    PG T WT ++ +  
Sbjct:   121 VVALPFLHLFTYYQLVGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWTSMQVESQ 180

Query:   192 YRYV--KNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPP------SILFMYKYLTE 243
             +  V   N+V ++G  YC       +  ++ + +   +L  PP            K++  
Sbjct:   181 FLDVDHNNVVFSNGVFYC-LNQRNHVAVFDPSLRTWNVLDVPPPRCPDDKSWNEGKFMVG 239

Query:   244 YDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGA-SCLWVPVEKGSAFAN 302
             Y G +L+  +  +     VF  + ++  W E ++L    +F    SC      K     N
Sbjct:   240 YKGDILVI-RTYENKDPLVFKLDLTRGIWEEKDTLGSLTIFVSRKSCESRTYVKDGMLRN 298

Query:   303 TVHWFGRYSYIRDVCREFIRKPVES-DSSKVAPRVRGYEYSKEEEEYMTQIWIQPP 357
             +V       Y  ++C    +  V S D  +   R    ++ K+       IWI+PP
Sbjct:   299 SV-------YFPELCYNEKQSVVYSFDEGRYHLREHDLDWGKQLSS--DNIWIEPP 345

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010172 AT1G49360 "AT1G49360" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 103/375 (27%), Positives = 173/375 (46%)

Query:    20 LPLEIINSIVSRLYVVYQIRFRAVCKRWR--AADIQSRDKFPWLMGYNSHS----CY-LY 72
             LP +++  I+SRL     IR   VCK W   AA ++ + +  WL+ +++       Y  +
Sbjct:   111 LPSDLVRLILSRLSFKDNIRSSTVCKAWGDIAASVRVKSRRCWLLYHDAFQDKGVSYGFF 170

Query:    73 DPCHKQKYTVFN-SDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFAD 131
             DP  K+K    N  + ++++ +    L SK GW+L      +N      + ++F++PF  
Sbjct:   171 DPVEKKKTKEMNLPELSKSSGI----LYSKDGWLL------MNDSLSLIADMYFFNPFTR 220

Query:   132 QIINLPAWR--EFSIAKATFSATPISPDCVVFVTWVGIMEISC-----ISICRPGDTTWT 184
             + I+LP  R  E       FS  P    C+VF    GI  IS      IS  RPG TTW 
Sbjct:   221 ERIDLPRNRIMESVHTNFAFSCAPTKKSCLVF----GINNISSSVAIKISTWRPGATTWL 276

Query:   185 ELRFQD----NYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSILF--MY 238
                F +     +R + N++ +DG  Y +  S  A+  ++  ++   +LP  P  +     
Sbjct:   277 HEDFPNLFPSYFRRLGNILYSDGLFYTA--SETALGVFDPTARTWNVLPVQPIPMAPRSI 334

Query:   239 KYLTEYDGSLLIFGKVVDGSGYR--VFTFNRSQMDWFEIESLDDRVLF-TGASCLWVPVE 295
             +++TEY+G + +    VD S     V+  NR +  W + E+LD   +F +  SC+     
Sbjct:   335 RWMTEYEGHIFL----VDASSLEPMVYRLNRLESVWEKKETLDGSSIFLSDGSCVMTYGL 390

Query:   296 KGSAFANTVHWFGRYSYIRDVCRE---FIRK-PVE----SDSSKVAPRVRGYEYSKEEEE 347
              GS  +N ++++ R+   R   +    F R  P +    S SS   P    +EY    ++
Sbjct:   391 TGS-MSNILYFWSRFINERRSTKSPCPFSRNHPYKYSLYSRSSCEDPEGYYFEYLTWGQK 449

Query:   348 YMTQIWIQPPVRRSI 362
                 +WI+PP   SI
Sbjct:   450 --VGVWIEPPHSISI 462

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955409 AT4G10695 "AT4G10695" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 66/216 (30%), Positives = 101/216 (46%)

Query:    38 IRFRAVCKRWRAA--DIQSRDKFPWLMGYNSHS--CYLYDPCHKQKYTVFNSDKNRTTLL 93
             IR  AVC+ WR A   ++  +K PW++ +  H     L+DP  ++ YT+     N   L+
Sbjct:    10 IRASAVCRAWRKAAESVRVVEKHPWVISFPRHYGVTILFDPLGRKSYTL-----NLPELV 64

Query:    94 GARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATP 153
             G     SK GW+L      V+        +FF +P+  ++INLP   E S     FS+ P
Sbjct:    65 GTDVCYSKDGWLLMRRSSLVD--------MFFLNPYTRELINLPKC-ELSFQAVAFSSVP 115

Query:   154 ISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYV----KNLVCADGFLYCSF 209
              S  C V         I  ISIC PG T W    F  ++ +      NLV A+G  YC F
Sbjct:   116 TSGTCAVIALRPFTRFIIRISICFPGATEWITQDFSCSHGFEPYMHSNLVYANGHFYC-F 174

Query:   210 FSLEAIVAYNVASQNLEILPYPPSIL-FMYKYLTEY 244
              S   +V +++AS+ +    +   I  +++ Y  E+
Sbjct:   175 SSGGVLVDFDLASRTMSHQAWNEHICPYIHMYNEEW 210

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713853 AT4G00893 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 93/339 (27%), Positives = 148/339 (43%)

Query:     6 KEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMG 63
             ++  +K+   S++DLP  +I  I+  L +   IR  A CK W  A +  R  DK PWLM 
Sbjct:    34 QDSSKKIMNPSFADLPSSLIEEIMLLLVLKDNIRASAACKSWYEAGVSVRVVDKHPWLMC 93

Query:    64 YNSH-SCYLY-DPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCS 121
             +    + + + DP H + +T+   +   +T+  +R      GW+L    +  +S     +
Sbjct:    94 FPKRGNLFEFRDPLHWKLHTLDLPELAESTVCYSR-----FGWLLM---RKASS-----N 140

Query:   122 PLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVF-VTWV-GIMEISCISICRPG 179
              +FF++PF+  II+LP   E    +  FS  P S DCV+  + +V G +    +S C PG
Sbjct:   141 DVFFFNPFSRDIISLPMC-ELDFQQIAFSCPPTSDDCVLLAIKFVPGEVNRVTVSTCNPG 199

Query:   180 DTTW------TELRF---QDNYRYVKN-LVC--ADGFLYCSFFSLEAIVAYNVASQNLEI 227
              T W      T LR    Q N  Y ++   C  A+G LY SF       +Y + +  L  
Sbjct:   200 ATKWITNDFPTFLRLFYMQSNLVYRRDRFYCFNAEGTLY-SFEPSYREWSY-ICADKLRC 257

Query:   228 LPYPPSILFMY--K--YLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIE--SLDDR 281
              PY     +M+  K  +L E  G L +   +   S  +   +    M W E+   +LD  
Sbjct:   258 -PYVHENQYMWCGKAVFLVEKKGELFV---MFTCSNEKPMVYKLFSMKWKELSRTTLDGM 313

Query:   282 VLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREF 320
               F   S     +     +     +F R+ Y R  C  F
Sbjct:   314 TFFV--SFYNSELRNNLPWMRNNVYFSRFGYNRKHCVSF 350

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2139207 AT4G10660 "AT4G10660" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 58/183 (31%), Positives = 90/183 (49%)

Query:    49 AADIQSRDKFPWLMGYNSHS--CYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVL 106
             A  ++  +K PW++ + +H    +L+DP  +++YT+     N   L+G     SK GW+L
Sbjct:     9 AESVRVVEKHPWVITFPNHEDLTFLFDPLERKRYTL-----NLPELVGTDVCYSKDGWLL 63

Query:   107 FEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVG 166
                   V+        +FF++P+  ++INLP   E +     FS+ P S  CVV      
Sbjct:    64 MRRSSLVD--------MFFFNPYTRELINLPKC-ELAFQAIAFSSAPTSGTCVVLALRPF 114

Query:   167 IMEISCISICRPGDTTWTELRFQDNYR---YV-KNLVCADGFLYCSFFSLEAIVAYNVAS 222
                I  ISIC PG T W    F  + R   Y+  NLV A+   YC F S   +V ++VAS
Sbjct:   115 TRYIIRISICYPGATEWITQEFSCSLRFDPYMHSNLVYANDHFYC-FSSGGVLVDFDVAS 173

Query:   223 QNL 225
             + +
Sbjct:   174 RTM 176

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102519 AT3G56470 "AT3G56470" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 74/293 (25%), Positives = 130/293 (44%)

Query:     6 KEKKQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMG 63
             +  K+K +  ++ +LP +++  ++SRL +   IR  AVCK W  A +  R     PWL+ 
Sbjct:    18 QSSKEKEKYQTFINLPCDLLQLVISRLPLKDNIRASAVCKTWHEACVSLRVIHTSPWLIY 77

Query:    64 YNS--HSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCS 121
             ++    S  LYDP   QK    N + +   L G R   SK GW+L     N NS      
Sbjct:    78 FSKTDDSYELYDPS-MQK----NCNLHFPELSGFRVCYSKDGWLLMY---NPNS-----Y 124

Query:   122 PLFFYSPFADQIINLPA-WREFSIAKATFSATPISPDCVVF----VTWVGIMEISCISIC 176
              L F++PF    + +P  W  +   +  FS  P S  C++F    VTW  I   +  +  
Sbjct:   125 QLLFFNPFTRDCVPMPTLWMAYD-QRMAFSCAPTSTSCLLFTVTSVTWNYITIKTYFANA 183

Query:   177 RPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILP-YPPSIL 235
             +   T+  + R Q N+   + +V ++G  YC   +   +  ++ +     +LP  PP   
Sbjct:   184 KEWKTSVFKNRLQRNFNTFEQIVFSNGVFYC-LTNTGCLALFDPSLNYWNVLPGRPPKRP 242

Query:   236 FMYK-YLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGA 287
                  ++TE+ G + +   +       V   + +  +W E ++L    ++  A
Sbjct:   243 GSNGCFMTEHQGEIFLI-YMYRHMNPTVLKLDLTSFEWAERKTLGGLTIYASA 294

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094004 AT3G18720 "AT3G18720" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 80/308 (25%), Positives = 129/308 (41%)

Query:     3 GGIKEKKQKLERGSWS-DLPLEIINSIVSRLYVVYQIRFRAVCKRW--RAADIQSRDKFP 59
             GG K+KK  + RG W   +P +++  I+SRL +   I    VCK W   A  ++     P
Sbjct:    34 GGPKKKKNCVNRGLWDKQIPTDLLQEILSRLGLKANIHASLVCKTWLKEAVSVRKFQSRP 93

Query:    60 WLMGYNSHSCYLYDPCHKQKYTVFNSDKNRT------TLLGARP--LDSKHGWVLFEGEK 111
             WL    S       P  +  Y +FN  +++T       L G R     +K GW+L   + 
Sbjct:    94 WLFYPQSQRG---GP-KEGDYVLFNPSRSQTHHLKFPELTGYRNKLACAKDGWLLVVKDN 149

Query:   112 NVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA-TFSATPISPDCVV--FVTWVGIM 168
                        +FF +PF  + I LP   + S     TFSA P S  C V  F     + 
Sbjct:   150 P--------DVVFFLNPFTGERICLPQVPQNSTRDCLTFSAAPTSTSCCVISFTPQSFLY 201

Query:   169 EISCISICRPGDTTWTELRFQDNYRY---VKNLVCADGFLYCSFFSLEAIVAYNVASQNL 225
              +  +   RPG++ WT   F D  RY   +   + ++G  YC   S    V ++ + +  
Sbjct:   202 AVVKVDTWRPGESVWTTHHF-DQKRYGEVINRCIFSNGMFYCLSTSGRLSV-FDPSRETW 259

Query:   226 EILPYPPSILFMYK-------YLTEYDGSLLIFG-KVVDGSGYRVFTFNRSQMDWFEIES 277
              +LP  P   F  K       ++TE++G + +   + V+      F  N     W E++ 
Sbjct:   260 NVLPVKPCRAFRRKIMLVRQVFMTEHEGDIFVVTTRRVNNRKLLAFKLNLQGNVWEEMKV 319

Query:   278 LDDRVLFT 285
              +   +F+
Sbjct:   320 PNGLTVFS 327

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103379 AT4G12382 "AT4G12382" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 42/144 (29%), Positives = 70/144 (48%)

Query:    10 QKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSR--DKFPWLMGYNSH 67
             +K+   S++DLP  +I  I+S L +   IR  A CK W    +  R  +K PWL+ +   
Sbjct:     3 KKIMNPSFADLPSSLIEVIMSHLALKNNIRASAACKSWYEVGVSVRVVEKHPWLICFPKR 62

Query:    68 -SCYLY-DPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFF 125
              + + + DP H + YT+   +   +T+  +R      GW+L    +   S       +FF
Sbjct:    63 GNLFEFRDPLHWKLYTLGLPELAESTVCYSR-----FGWLLM---RKATS-----KDVFF 109

Query:   126 YSPFADQIINLPAWREFSIAKATF 149
             ++PF+  II+LP   E +    TF
Sbjct:   110 FNPFSRDIISLPKC-ELAFEHITF 132

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2139064 AT4G12370 "AT4G12370" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 75/304 (24%), Positives = 121/304 (39%)

Query:    71 LYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFA 130
             LYDP H++ YT+     N   L  +    S+ GW+L    K ++   R+   +FF++PF 
Sbjct:    12 LYDPLHQKMYTL-----NLPELAKSTVCYSRDGWLLMR--KTIS---RE---MFFFNPFT 58

Query:   131 DQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTW-TE-LRF 188
              ++IN+P     S     FS  P S  CV+         I+  S C P  T W TE L+F
Sbjct:    59 RELINVPKCT-LSYDAIAFSCAPTSGTCVLLAFKHVSYRITTTSTCHPKATEWVTEDLQF 117

Query:   189 QDNYRYV----KNLVCADGFLYCSFFSLEAIVAYNVASQNLE-----ILPYPP-SILFMY 238
                +R       N+V A    YC      ++  ++ +S+  +     +LP P  S  F Y
Sbjct:   118 HRRFRSETLNHSNVVYAKRRFYC-LDGQGSLYYFDPSSRRWDFSYTYLLPCPYISDRFSY 176

Query:   239 KYLTEYDGSLL-----IFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVP 293
             +Y  +     L     +F K+    G +        ++W EI S     L          
Sbjct:   177 QYERKKKRIFLAVRKGVFFKIFTCDGEKPIVHKLEDINWEEINSTTIDGLTIFTGLYSSE 236

Query:   294 VEKGSAFANTVHWFGRYSYIRDVCREFIRKPVESDSSKVAPRVRGYEYSKEEEEYMTQIW 353
             V     +     +F R  +    C  +       D  +  PR +  E  +E+   +  +W
Sbjct:   237 VRLNLPWMRNSVYFPRLRFNVKRCVSY-----SLDEERYYPRKQWQE--QEDLCPIENLW 289

Query:   354 IQPP 357
             I+PP
Sbjct:   290 IRPP 293

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037191 AT1G44080 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 8.9e-07, P = 8.9e-07
 Identities = 88/348 (25%), Positives = 156/348 (44%)

Query:    17 WSDLPLEIINSIVSRLYV-VYQIRFRAVCKRWRAADIQSRDKFPWLMGYNSHSCYLYDPC 75
             WSDL  ++I+ + + L   +  +RFR++CK WR+  + ++ +      +N     L  P 
Sbjct:     6 WSDLHEDLIDLLANNLSSNINLLRFRSICKPWRST-VATKKRL-----HNHFERNL--PT 57

Query:    76 HKQKYTVFN-SDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLF--FYSPFADQ 132
              K+K TV + S   R TL    P  +K GW++   + + +S     SPL     +P +D+
Sbjct:    58 FKKKKTVVSPSTFFRVTL--PSPCRNK-GWLIKNRQVSESSKNNLLSPLSGKTITP-SDK 113

Query:   133 IINL---PAWREFSIAKA-TFSATPISPDCVVFVTWVGIMEISCISICRPGDTT--WTEL 186
              ++L     +R+ SI +    S   +  D V FV      EI C   C+ G+ T  WT +
Sbjct:   114 TLDLLKVECFRDSSILQLFADSDRVVFLDNVFFVVDFK-NEIWC---CKSGEETRHWTRI 169

Query:   187 RFQDNYRYVKNLVCADGFLYCSFFSLEAIVAYNVASQNLEILPYPPSI-LFMY------- 238
               ++   ++ +++   G +Y     L   + + ++   L I  Y PS  +  Y       
Sbjct:   170 NNEEAKGFL-DIILHKGKIYA--LDLTGAIWW-ISLSELSIYQYGPSTPVDFYEIDNCKE 225

Query:   239 KYLTEYDGSLLI---FGK-------VVDGSG-YRVFTFNRSQMDWFEIESLDDRVLFTGA 287
             K L EY G L +   F K       + + +  ++V+  +++ ++W E+ SL D+ L    
Sbjct:   226 KRLVEYCGELCVVHRFYKKFCVKRVLTERTVCFKVYKMDKNLVEWVEVSSLGDKALIVAT 285

Query:   288 -SCLWVPV-EKGSAFANTVHWFGR--YSYIR-DVCREFIRKPVESDSS 330
              +C  V   E      N +++  R   S  + D C   I K + S SS
Sbjct:   286 DNCFLVLASEYYGCLENAIYFNDREDVSVFKLDDC-SIITKQINSSSS 332

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam00646	48	pfam00646, F-box, F-box domain	2e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	2e-04
PLN03215	373	PLN03215, PLN03215, ascorbic acid mannose pathway	0.002

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 16 SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAA 50
          S  DLP +++  I+SRL     +R   V KRWR+ 
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSL 36

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 20 LPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKF 58
          LP EI+  I+S+L     +R R V ++WR+  I S D +
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSL-IDSHDFW 38

Length = 41

>gnl|CDD|178754 PLN03215, PLN03215, ascorbic acid mannose pathway regulator 1; Provisional

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 17 WSDLPLEIINSIVSRLYVVYQI-RFRAVCKRWRAA 50
          WS LP E+++ I  RL+   ++ RFR++C+ WR++
Sbjct: 4  WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSS 38

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	100.0
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.84
PHA02713	557	hypothetical protein; Provisional	99.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.04
PF03478	54	DUF295: Protein of unknown function (DUF295); Inte	98.96
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.86
PHA02790	480	Kelch-like protein; Provisional	98.82
PHA03098	534	kelch-like protein; Provisional	98.8
PHA02713	557	hypothetical protein; Provisional	98.78
PHA02790	480	Kelch-like protein; Provisional	98.69
PHA03098	534	kelch-like protein; Provisional	98.69
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.68
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.63
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.59
PLN02153	341	epithiospecifier protein	98.59
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.53
PLN02193	470	nitrile-specifier protein	98.48
PLN02153	341	epithiospecifier protein	98.47
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.47
PLN02193	470	nitrile-specifier protein	98.35
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.3
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.27
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.19
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.03
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.92
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.14
KOG1230	521	consensus Protein containing repeated kelch motifs	95.78
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.7
KOG4693	392	consensus Uncharacterized conserved protein, conta	95.68
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	95.62
KOG4693	392	consensus Uncharacterized conserved protein, conta	95.49
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	93.97
KOG1230	521	consensus Protein containing repeated kelch motifs	93.73
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.3
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	92.16
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.78
PF13964	50	Kelch_6: Kelch motif	90.36
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	89.47
PF13964	50	Kelch_6: Kelch motif	82.68
KOG4341	483	consensus F-box protein containing LRR [General fu	81.99
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	80.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	80.67
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	80.19

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=100.00  E-value=6.4e-36  Score=273.06  Aligned_cols=277  Identities=17%  Similarity=0.234  Sum_probs=185.8

Q ss_pred             CCCCCChHHHHHHHHhcCCh-hhhhhhhhcchhhHHhhccC-----CCCCceEEEee---CC-----ceEEEcC----CC
Q 040662           15 GSWSDLPLEIINSIVSRLYV-VYQIRFRAVCKRWRAADIQS-----RDKFPWLMGYN---SH-----SCYLYDP----CH   76 (365)
Q Consensus        15 ~~w~~LP~Dll~~Il~rLp~-~~l~r~r~VCk~Wrs~~~~~-----~~~~P~ll~~~---~~-----~~~~~~~----~~   76 (365)
                      ++|++||+|||..|..|||. .|++|||+|||+||+++...     .++.||+++.+   ..     +|.+-.+    +.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~   81 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAFLSR   81 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccceeee
Confidence            57999999999999999986 89999999999999998863     14557776543   10     0100000    00


Q ss_pred             CceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc----ccce---e-EEE
Q 040662           77 KQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR----EFSI---A-KAT  148 (365)
Q Consensus        77 ~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~----~~~~---~-~~~  148 (365)
                      ...+++++     +       .++++|||+-.++..      ..+.+.|.||+++..+.+|+..    ++.+   . ...
T Consensus        82 ~~~~r~~~-----~-------~~~~~~WLik~~~~~------~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~  143 (373)
T PLN03215         82 AAFFRVTL-----S-------SSPSKGWLIKSDMDV------NSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQ  143 (373)
T ss_pred             eEEEEeec-----C-------CCCCCCcEEEEeccc------cCCccEecCccccCccCCCCccceeeeeEEEEccceEE
Confidence            01222221     1       135699999987651      2468999999999999888731    1111   0 001


Q ss_pred             E-ecCC------------------CCC-CeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEE
Q 040662          149 F-SATP------------------ISP-DCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCS  208 (365)
Q Consensus       149 l-s~~p------------------~s~-~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~  208 (365)
                      + ....                  .++ ++.|++...    ...+++++  +++|+.++..  ...+.|+++++|+||+ 
T Consensus       144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~----~g~l~~w~--~~~Wt~l~~~--~~~~~DIi~~kGkfYA-  214 (373)
T PLN03215        144 VLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGR----DGKINYWD--GNVLKALKQM--GYHFSDIIVHKGQTYA-  214 (373)
T ss_pred             EEecccccccccceeEEEEEEeecCCCcceEEEEEee----cCcEeeec--CCeeeEccCC--CceeeEEEEECCEEEE-
Confidence            1 1110                  000 122221111    12344454  5899999742  3458999999999999 


Q ss_pred             ecCCCcEEE-EEecCCceeeeec----CC--CceeceeEEEEeCCcEEEEEEEcC---------------CCceEEEEee
Q 040662          209 FFSLEAIVA-YNVASQNLEILPY----PP--SILFMYKYLTEYDGSLLIFGKVVD---------------GSGYRVFTFN  266 (365)
Q Consensus       209 ~l~~~g~i~-~d~~~~~~~~i~~----p~--~~~~~~~~Lve~~G~L~lV~~~~~---------------~~~~~V~~ld  266 (365)
                       ++..|.+. +|.+.+. +.+..    .+  .......||||+.|+|+||.+...               ...++||++|
T Consensus       215 -vD~~G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD  292 (373)
T PLN03215        215 -LDSIGIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD  292 (373)
T ss_pred             -EcCCCeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence             99999998 8854321 11111    11  112246899999999999998631               1469999999


Q ss_pred             CCCCCeEEeccCCCeEEEeccCC------CCC-CCCCCeEEEeeeCCCceEEEEcCceeeeec
Q 040662          267 RSQMDWFEIESLDDRVLFTGASC------LWV-PVEKGSAFANTVHWFGRYSYIRDVCREFIR  322 (365)
Q Consensus       267 ~~~~~W~~v~~lg~~~lfvg~~~------~~~-~~~~n~IYf~~~~~~~~~vy~l~~~~~~~~  322 (365)
                      .+.++|+++++|||+++|+|.++      .++ |+++|||||+++  +...||+|++|+..+.
T Consensus       293 ~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        293 DELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI  353 (373)
T ss_pred             CCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence            99999999999999999999873      455 789999999984  4567999999886654

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.84  E-value=1.6e-19  Score=159.68  Aligned_cols=206  Identities=17%  Similarity=0.262  Sum_probs=139.3

Q ss_pred             EEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCccc---c-eeEEEEecCCCCCCeEEEEEeC--CCcCeE
Q 040662           98 LDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREF---S-IAKATFSATPISPDCVVFVTWV--GIMEIS  171 (365)
Q Consensus        98 ~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~---~-~~~~~ls~~p~s~~~~v~v~~~--~~~~~~  171 (365)
                      +|+|+||||+...          ..++|+||+||+++.||+....   . ....+|++++.+++|+|+....  .+....
T Consensus         1 ~~sCnGLlc~~~~----------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~   70 (230)
T TIGR01640         1 VVPCDGLICFSYG----------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQS   70 (230)
T ss_pred             CcccceEEEEecC----------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCc
Confidence            4789999988754          3799999999999999876321   1 1246789999888999984322  111346


Q ss_pred             EEEEEecCCCceEEeeeeCC-ccceeeEEEECCEEEEEecCCCc------EEE-EEecCCcee-eeecCCCce--eceeE
Q 040662          172 CISICRPGDTTWTELRFQDN-YRYVKNLVCADGFLYCSFFSLEA------IVA-YNVASQNLE-ILPYPPSIL--FMYKY  240 (365)
Q Consensus       172 ~~~~~~~g~~~W~~~~~~~~-~~~~~~~v~~~G~lY~~~l~~~g------~i~-~d~~~~~~~-~i~~p~~~~--~~~~~  240 (365)
                      .+++|++++++|+.+..+.. .......|++||.+||  +...+      .|+ ||+++++|+ .++.|....  .....
T Consensus        71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw--~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~  148 (230)
T TIGR01640        71 EHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYY--LAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS  148 (230)
T ss_pred             cEEEEEeCCCCccccccCCCCccccCCeEEECCEEEE--EEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence            78999999999999874211 1122348999999988  86421      577 999999999 577665321  23467


Q ss_pred             EEEeCCcEEEEEEEcCCCceEEEEeeCC-CCCeEEeccCCCeEEEeccCC-CCC-C-CCCCeEEEeeeCCCc--eEEEEc
Q 040662          241 LTEYDGSLLIFGKVVDGSGYRVFTFNRS-QMDWFEIESLDDRVLFTGASC-LWV-P-VEKGSAFANTVHWFG--RYSYIR  314 (365)
Q Consensus       241 Lve~~G~L~lV~~~~~~~~~~V~~ld~~-~~~W~~v~~lg~~~lfvg~~~-~~~-~-~~~n~IYf~~~~~~~--~~vy~l  314 (365)
                      |++.+|+|+++........++||.|++. .++|++..+++...+. +... ... + ..++.|++......+  ...|+.
T Consensus       149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~-~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~  227 (230)
T TIGR01640       149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLP-DLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNV  227 (230)
T ss_pred             EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchh-hhhhheeEeEEeeCCEEEEEeCCCCceEEEEEec
Confidence            8999999999987654456999999864 4679998888632111 1000 001 2 256777776542222  346665


Q ss_pred             Cc
Q 040662          315 DV  316 (365)
Q Consensus       315 ~~  316 (365)
                      ++
T Consensus       228 ~~  229 (230)
T TIGR01640       228 GE  229 (230)
T ss_pred             cC
Confidence            54

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=99.26  E-value=6.4e-10  Score=110.40  Aligned_cols=234  Identities=11%  Similarity=0.056  Sum_probs=148.9

Q ss_pred             EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce--eE
Q 040662           70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI--AK  146 (365)
Q Consensus        70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~--~~  146 (365)
                      ..||+..++|..+. +     |........+..+|-|++..+...  .......+..+||.++.|..+|+++..+.  ..
T Consensus       275 ~~yd~~~~~W~~l~~m-----p~~r~~~~~a~l~~~IYviGG~~~--~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~  347 (557)
T PHA02713        275 LVYNINTMEYSVISTI-----PNHIINYASAIVDNEIIIAGGYNF--NNPSLNKVYKINIENKIHVELPPMIKNRCRFSL  347 (557)
T ss_pred             EEEeCCCCeEEECCCC-----CccccceEEEEECCEEEEEcCCCC--CCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence            57999999999875 4     432222234455888887765310  01123568899999999999999843221  12


Q ss_pred             EEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC------------
Q 040662          147 ATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE------------  213 (365)
Q Consensus       147 ~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~------------  213 (365)
                      +++      ++.+.++... +......++.|++.+++|+.++..........++.++|++|+  ++-.            
T Consensus       348 ~~~------~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYv--iGG~~~~~~~~~~~~~  419 (557)
T PHA02713        348 AVI------DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYI--IGGRTEHIDYTSVHHM  419 (557)
T ss_pred             EEE------CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEE--EeCCCccccccccccc
Confidence            222      2333333221 111245789999999999998753222234466788999999  7531            


Q ss_pred             ------------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCC--ceEEEEeeCCC-CCeEEecc
Q 040662          214 ------------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGS--GYRVFTFNRSQ-MDWFEIES  277 (365)
Q Consensus       214 ------------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~--~~~V~~ld~~~-~~W~~v~~  277 (365)
                                  ..+. ||+.+++|+.++ |++......-++..+|+|++++...+..  .-.|.+.|.++ .+|+.+..
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~  498 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT  498 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecC-CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence                        2366 999999998776 3332223445677899999997653221  12477888888 79999999


Q ss_pred             CCCeEEEeccCCCCCCCCCCeEEEeeeCCC--ceEEEEcCceeeeeccc
Q 040662          278 LDDRVLFTGASCLWVPVEKGSAFANTVHWF--GRYSYIRDVCREFIRKP  324 (365)
Q Consensus       278 lg~~~lfvg~~~~~~~~~~n~IYf~~~~~~--~~~vy~l~~~~~~~~~~  324 (365)
                      |+..-...|     ....+|+||.+...+.  ....||.++++|+..+.
T Consensus       499 m~~~r~~~~-----~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        499 TESRLSALH-----TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             cCcccccce-----eEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            985332222     1247899999874221  13589999988886544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.04  E-value=1.7e-08  Score=100.13  Aligned_cols=234  Identities=14%  Similarity=0.103  Sum_probs=153.5

Q ss_pred             EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce--eE
Q 040662           70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI--AK  146 (365)
Q Consensus        70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~--~~  146 (365)
                      ..|||..+.|..+. +     |.-+....++..+|.|+...+.+.  .......+..+||.+++|..+|++...+.  ..
T Consensus       304 e~yd~~~~~w~~~a~m-----~~~r~~~~~~~~~~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v  376 (571)
T KOG4441|consen  304 ECYDPKTNEWSSLAPM-----PSPRCRVGVAVLNGKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV  376 (571)
T ss_pred             EEecCCcCcEeecCCC-----CcccccccEEEECCEEEEEccccC--CCcccceEEEecCCCCceeccCCccCcccccee
Confidence            68999999888764 4     432223334556888888877631  11124678999999999999999843321  22


Q ss_pred             EEEecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC----C---cEEE-
Q 040662          147 ATFSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL----E---AIVA-  217 (365)
Q Consensus       147 ~~ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~----~---g~i~-  217 (365)
                      +.+      .+.+.+|.. .+......++.|++.++.|+.............++.++|++|+  +.-    .   ..+. 
T Consensus       377 ~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi--~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  377 AVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI--IGGGDGSSNCLNSVEC  448 (571)
T ss_pred             EEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE--EcCcCCCccccceEEE
Confidence            222      234444433 2223556899999999999999854333456688899999999  764    1   2466 


Q ss_pred             EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCC
Q 040662          218 YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEK  296 (365)
Q Consensus       218 ~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~  296 (365)
                      ||+.+++|+.++ |+.......-+...+|.|+.|+...+. .--.|-..|.++.+|..+..|....-=+|     .-..+
T Consensus       449 YDP~t~~W~~~~-~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-----~~~~~  522 (571)
T KOG4441|consen  449 YDPETNTWTLIA-PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-----VVVLG  522 (571)
T ss_pred             EcCCCCceeecC-CcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-----EEEEC
Confidence            999999998876 333222233356679999999877542 22337778889999999987763211001     12478


Q ss_pred             CeEEEeeeCCCc-----eEEEEcCceeeeeccc
Q 040662          297 GSAFANTVHWFG-----RYSYIRDVCREFIRKP  324 (365)
Q Consensus       297 n~IYf~~~~~~~-----~~vy~l~~~~~~~~~~  324 (365)
                      |.||.....+..     ..+|+.++++|.....
T Consensus       523 ~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  523 GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             CEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            889988642211     2599999999886543

>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants

Probab=98.96  E-value=1.1e-09  Score=73.05  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             eEEeccCCCeEEEeccCC------CCC-CCCCCeEEEeee----CCCceEEEEc
Q 040662          272 WFEIESLDDRVLFTGASC------LWV-PVEKGSAFANTV----HWFGRYSYIR  314 (365)
Q Consensus       272 W~~v~~lg~~~lfvg~~~------~~~-~~~~n~IYf~~~----~~~~~~vy~l  314 (365)
                      |+++++|||++||||.++      .++ ++++|||||.++    ..+..++|||
T Consensus         1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~~~~~~~~~~~Vy~m   54 (54)
T PF03478_consen    1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDDSSDESDRDIGVYNM   54 (54)
T ss_pred             CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecCCCCCCCCCEEEEeC
Confidence            999999999999999874      446 789999999987    1344578886

The function of the proteins is unknown.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.86  E-value=2.3e-09  Score=69.41  Aligned_cols=38  Identities=37%  Similarity=0.529  Sum_probs=33.9

Q ss_pred             CCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      |..||+||+.+|+..|+..|++++..|||+|+.++.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~   38 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN   38 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh
Confidence            68999999999999999999999999999999998764

>PHA02790 Kelch-like protein; Provisional

Probab=98.82  E-value=4.1e-07  Score=89.11  Aligned_cols=185  Identities=11%  Similarity=0.019  Sum_probs=117.5

Q ss_pred             EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEE
Q 040662           70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAT  148 (365)
Q Consensus        70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~  148 (365)
                      ..|||.+++|..++ +     |..+......+.+|.|++..+..      ....+..+||.+++|..+|+++......++
T Consensus       290 ~~Ydp~~~~W~~~~~m-----~~~r~~~~~v~~~~~iYviGG~~------~~~sve~ydp~~n~W~~~~~l~~~r~~~~~  358 (480)
T PHA02790        290 IAVNYISNNWIPIPPM-----NSPRLYASGVPANNKLYVVGGLP------NPTSVERWFHGDAAWVNMPSLLKPRCNPAV  358 (480)
T ss_pred             EEEECCCCEEEECCCC-----CchhhcceEEEECCEEEEECCcC------CCCceEEEECCCCeEEECCCCCCCCcccEE
Confidence            56899999998875 3     32222222345689988887642      124577889999999999998433222111


Q ss_pred             EecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCCcEEE-EEecCCceee
Q 040662          149 FSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVA-YNVASQNLEI  227 (365)
Q Consensus       149 ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~~~~  227 (365)
                      ...    ++.+.++.... .....++.|++.++.|+..+....-.....++.++|++|+  +.  |.+. ||+.+++|+.
T Consensus       359 ~~~----~g~IYviGG~~-~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv--~G--G~~e~ydp~~~~W~~  429 (480)
T PHA02790        359 ASI----NNVIYVIGGHS-ETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFL--VG--RNAEFYCESSNTWTL  429 (480)
T ss_pred             EEE----CCEEEEecCcC-CCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEE--EC--CceEEecCCCCcEeE
Confidence            111    12333332211 1224678999999999998753222234466789999999  77  5566 9999999998


Q ss_pred             eecCCCceeceeEEEEeCCcEEEEEEEcCCC-ceEEEEeeCCCCCeEEe
Q 040662          228 LPYPPSILFMYKYLTEYDGSLLIFGKVVDGS-GYRVFTFNRSQMDWFEI  275 (365)
Q Consensus       228 i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~-~~~V~~ld~~~~~W~~v  275 (365)
                      ++. ++......-++..+|++++++...... .-.|...|.++.+|.-.
T Consensus       430 ~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        430 IDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             cCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence            763 222223345667799999998754221 23466677788999754

>PHA03098 kelch-like protein; Provisional

Probab=98.80  E-value=8.1e-07  Score=88.44  Aligned_cols=208  Identities=13%  Similarity=0.106  Sum_probs=125.7

Q ss_pred             cCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCC-CcCeEEEEEEecC
Q 040662          101 KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVG-IMEISCISICRPG  179 (365)
Q Consensus       101 ~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~-~~~~~~~~~~~~g  179 (365)
                      .++-|++..+...  .+.....++.+||.|++|.++|+++.......+...    ++.+.++.... ......++.|++.
T Consensus       293 ~~~~lyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        293 LNNVIYFIGGMNK--NNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             ECCEEEEECCCcC--CCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCC
Confidence            3666666655321  111234789999999999999987422221111111    23333332221 1134568899999


Q ss_pred             CCceEEeeeeCCccceeeEEEECCEEEEEecCC---C----cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEE
Q 040662          180 DTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL---E----AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIF  251 (365)
Q Consensus       180 ~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~---~----g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV  251 (365)
                      +++|+..+..........++.++|++|+  ++-   .    ..+. ||+.+++|+.++..| ........+..+|+++++
T Consensus       367 ~~~W~~~~~lp~~r~~~~~~~~~~~iYv--~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~  443 (534)
T PHA03098        367 ESKWREEPPLIFPRYNPCVVNVNNLIYV--IGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIYHDGKIYVI  443 (534)
T ss_pred             CCceeeCCCcCcCCccceEEEECCEEEE--ECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEEECCEEEEE
Confidence            9999987642212234456778999999  753   1    2466 999999998776322 212223345568999988


Q ss_pred             EEEcCCC----ceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeeeCC-----CceEEEEcCceeeeec
Q 040662          252 GKVVDGS----GYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHW-----FGRYSYIRDVCREFIR  322 (365)
Q Consensus       252 ~~~~~~~----~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~~~-----~~~~vy~l~~~~~~~~  322 (365)
                      +......    .-.++..|..+.+|.++..++... + + .  .....+|.||......     ....+||.++++|...
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~-~-~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-I-N-A--SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF  518 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCCceeeCCCCCccc-c-c-c--eEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence            7653211    224888999999999998775310 0 0 0  0112478888876421     1236899999988865

>PHA02713 hypothetical protein; Provisional

Probab=98.78  E-value=4.2e-07  Score=90.47  Aligned_cols=192  Identities=11%  Similarity=0.001  Sum_probs=120.7

Q ss_pred             EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEE
Q 040662           70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAT  148 (365)
Q Consensus        70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~  148 (365)
                      ..|||..++|..++ +     |..+.....++.+|-|++..+..+   ......+..+||.|++|..+|+++.......+
T Consensus       323 ~~Yd~~~n~W~~~~~m-----~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~  394 (557)
T PHA02713        323 YKINIENKIHVELPPM-----IKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDKWKMLPDMPIALSSYGM  394 (557)
T ss_pred             EEEECCCCeEeeCCCC-----cchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCeEEECCCCCcccccccE
Confidence            56898888887664 3     322222334566888888876421   11134688999999999999987432221111


Q ss_pred             EecCCCCCCeEEEEEeCCC-------------------cCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEe
Q 040662          149 FSATPISPDCVVFVTWVGI-------------------MEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSF  209 (365)
Q Consensus       149 ls~~p~s~~~~v~v~~~~~-------------------~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~  209 (365)
                      ...    ++.+.++.....                   .....++.|++.++.|+.++..........++.++|++|+  
T Consensus       395 ~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv--  468 (557)
T PHA02713        395 CVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYV--  468 (557)
T ss_pred             EEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEE--
Confidence            111    233333322110                   0134688999999999988753222234567899999999  


Q ss_pred             cCCC-------cEEE-EEecC-CceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEeccC
Q 040662          210 FSLE-------AIVA-YNVAS-QNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESL  278 (365)
Q Consensus       210 l~~~-------g~i~-~d~~~-~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~l  278 (365)
                      +.-.       ..+. ||+.+ ++|+.++ +.+.......++..+|+|++++...+..  .|-..|..+.+|..+..-
T Consensus       469 ~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~~~~iyv~Gg~~~~~--~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        469 VCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILHDNTIMMLHCYESYM--LQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             EeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEEECCEEEEEeeeccee--ehhhcCcccccccchhhh
Confidence            8531       1355 99998 7999776 3333334456677899999998865322  344556688999988753

>PHA02790 Kelch-like protein; Provisional

Probab=98.69  E-value=1.9e-06  Score=84.47  Aligned_cols=196  Identities=9%  Similarity=0.034  Sum_probs=119.4

Q ss_pred             cCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCC
Q 040662          101 KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGD  180 (365)
Q Consensus       101 ~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~  180 (365)
                      .++-|++..+...   ......+..+||.+++|..+|+++...........    ++.+.++....  ....++.|++.+
T Consensus       270 ~~~~lyviGG~~~---~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~--~~~sve~ydp~~  340 (480)
T PHA02790        270 VGEVVYLIGGWMN---NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLP--NPTSVERWFHGD  340 (480)
T ss_pred             ECCEEEEEcCCCC---CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcC--CCCceEEEECCC
Confidence            4566666654311   11234577899999999999988433211111111    23444433221  224578999999


Q ss_pred             CceEEeeeeCCccceeeEEEECCEEEEEecCCC----cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEc
Q 040662          181 TTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE----AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVV  255 (365)
Q Consensus       181 ~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~----g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~  255 (365)
                      ++|+.++..........++.++|++|+  +.-.    ..+. ||+.+++|+.++.++ ........+..+|+|++++.  
T Consensus       341 n~W~~~~~l~~~r~~~~~~~~~g~IYv--iGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~~~~~~~~~IYv~GG--  415 (480)
T PHA02790        341 AAWVNMPSLLKPRCNPAVASINNVIYV--IGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKSCALVFGRRLFLVGR--  415 (480)
T ss_pred             CeEEECCCCCCCCcccEEEEECCEEEE--ecCcCCCCccEEEEeCCCCEEEeCCCCC-CccccceEEEECCEEEEECC--
Confidence            999988753222234567889999999  8541    2355 999999998865332 21222345567899999873  


Q ss_pred             CCCceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeeeCCC-----ceEEEEcCceeee
Q 040662          256 DGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWF-----GRYSYIRDVCREF  320 (365)
Q Consensus       256 ~~~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~~~~-----~~~vy~l~~~~~~  320 (365)
                         ..++|  |.++.+|+.+.+|...--..|     ....+|.||.......     ...+||.++++|.
T Consensus       416 ---~~e~y--dp~~~~W~~~~~m~~~r~~~~-----~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~  475 (480)
T PHA02790        416 ---NAEFY--CESSNTWTLIDDPIYPRDNPE-----LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN  475 (480)
T ss_pred             ---ceEEe--cCCCCcEeEcCCCCCCccccE-----EEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence               23444  557889999998863111111     1246788998864211     1258888888876

>PHA03098 kelch-like protein; Provisional

Probab=98.69  E-value=1.9e-06  Score=85.84  Aligned_cols=197  Identities=10%  Similarity=0.039  Sum_probs=120.9

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~  147 (365)
                      ...||+.+++|..++ +     |..+......+.+|-|++..+..   .+.....+..+||.|++|..+|+++.......
T Consensus       313 v~~yd~~~~~W~~~~~~-----~~~R~~~~~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~  384 (534)
T PHA03098        313 VVSYDTKTKSWNKVPEL-----IYPRKNPGVTVFNNRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLIFPRYNPC  384 (534)
T ss_pred             EEEEeCCCCeeeECCCC-----CcccccceEEEECCEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcCcCCccce
Confidence            357899999997764 3     32222222334577777776542   11123568899999999999988743322221


Q ss_pred             EEecCCCCCCeEEEEEeC--CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC---------cEE
Q 040662          148 TFSATPISPDCVVFVTWV--GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE---------AIV  216 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~~--~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~---------g~i  216 (365)
                      +...    ++.+.++...  .......++.|++.+++|+.++..........++.++|++|+  ++-.         ..+
T Consensus       385 ~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~v  458 (534)
T PHA03098        385 VVNV----NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV--IGGISYIDNIKVYNIV  458 (534)
T ss_pred             EEEE----CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE--ECCccCCCCCcccceE
Confidence            1111    2333333221  111235788999999999988742212234467888999999  7531         136


Q ss_pred             E-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCC-ceEEEEeeCCCCCeEEeccCCC
Q 040662          217 A-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGS-GYRVFTFNRSQMDWFEIESLDD  280 (365)
Q Consensus       217 ~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~-~~~V~~ld~~~~~W~~v~~lg~  280 (365)
                      . ||+.+++|+.++..+. ......++..+|+|++++...... .-.|+..|.++++|..+..++.
T Consensus       459 ~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        459 ESYNPVTNKWTELSSLNF-PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             EEecCCCCceeeCCCCCc-ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            6 9999999998763221 112233455689999887654221 3358888888999999887654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.68  E-value=9.7e-07  Score=87.77  Aligned_cols=193  Identities=13%  Similarity=0.140  Sum_probs=125.7

Q ss_pred             EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEE
Q 040662           70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAT  148 (365)
Q Consensus        70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~  148 (365)
                      ..|||..++|..++ +     +.-+...=+++.+|.|+...+..+   ......+-.++|.|.+|-..+++.......  
T Consensus       352 e~YD~~~~~W~~~a~M-----~~~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~W~~va~m~~~r~~~--  421 (571)
T KOG4441|consen  352 ERYDPRTNQWTPVAPM-----NTKRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNKWTPVAPMLTRRSGH--  421 (571)
T ss_pred             EEecCCCCceeccCCc-----cCccccceeEEECCEEEEEecccc---ccccccEEEecCCCCcccccCCCCcceeee--
Confidence            67899988888753 2     111111225677999999877631   111346889999999999998874322221  


Q ss_pred             EecCCCCCCeEEEEEeCCCc-CeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC-c-----EEE-EEe
Q 040662          149 FSATPISPDCVVFVTWVGIM-EISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE-A-----IVA-YNV  220 (365)
Q Consensus       149 ls~~p~s~~~~v~v~~~~~~-~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~-g-----~i~-~d~  220 (365)
                       +.....+..+++-...+.. ....++.|+|.+++|+.++.....+....++..||++|+  +.-. |     .+- ||+
T Consensus       422 -gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv--vGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  422 -GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV--VGGFDGTSALSSVERYDP  498 (571)
T ss_pred             -EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE--ECCccCCCccceEEEEcC
Confidence             1111112222221112222 457899999999999999864333345568999999999  8642 2     355 999


Q ss_pred             cCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC---CceEEEEeeCCCCCeEEeccC
Q 040662          221 ASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG---SGYRVFTFNRSQMDWFEIESL  278 (365)
Q Consensus       221 ~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~---~~~~V~~ld~~~~~W~~v~~l  278 (365)
                      .+++|+.+. ++........++..+|+|++|......   ..++.|  |.++.+|.+...+
T Consensus       499 ~~~~W~~v~-~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~~  556 (571)
T KOG4441|consen  499 ETNQWTMVA-PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTEP  556 (571)
T ss_pred             CCCceeEcc-cCccccccccEEEECCEEEEEecccCccccceeEEc--CCCCCceeeCCCc
Confidence            999999885 333223455667789999999886432   345555  8889999998873

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.63  E-value=1.8e-07  Score=74.69  Aligned_cols=78  Identities=19%  Similarity=0.456  Sum_probs=61.6

Q ss_pred             EEEECCEEEEEecCCC-----cEEE-EEecCCceeeeecC--CCceeceeEEEEeCCcEEEEEEEcCC--CceEEEEeeC
Q 040662          198 LVCADGFLYCSFFSLE-----AIVA-YNVASQNLEILPYP--PSILFMYKYLTEYDGSLLIFGKVVDG--SGYRVFTFNR  267 (365)
Q Consensus       198 ~v~~~G~lY~~~l~~~-----g~i~-~d~~~~~~~~i~~p--~~~~~~~~~Lve~~G~L~lV~~~~~~--~~~~V~~ld~  267 (365)
                      +++.||.+|+  +...     ..|+ ||+.+++|+.++.|  +........|++.+|+|+++......  ..++||.|+.
T Consensus         1 gicinGvly~--~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD   78 (129)
T PF08268_consen    1 GICINGVLYW--LAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED   78 (129)
T ss_pred             CEEECcEEEe--EEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence            3689999988  8653     5677 99999999999987  33345678899999999998877532  3699999986


Q ss_pred             C-CCCeEEecc
Q 040662          268 S-QMDWFEIES  277 (365)
Q Consensus       268 ~-~~~W~~v~~  277 (365)
                      . +++|++...
T Consensus        79 ~~k~~Wsk~~~   89 (129)
T PF08268_consen   79 YEKQEWSKKHI   89 (129)
T ss_pred             cccceEEEEEE
Confidence            4 578998754

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.59  E-value=1.4e-08  Score=66.01  Aligned_cols=39  Identities=38%  Similarity=0.490  Sum_probs=33.2

Q ss_pred             CCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           16 SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        16 ~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      .|.+||+|++.+|+.+|+..++++++.|||+|++++.+.
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            367899999999999999999999999999999998764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN02153 epithiospecifier protein

Probab=98.59  E-value=2.4e-05  Score=73.30  Aligned_cols=211  Identities=14%  Similarity=0.054  Sum_probs=123.1

Q ss_pred             EEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccc------eeEEEEecCCCCCCeEEEEEeC-CCcCe
Q 040662           98 LDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFS------IAKATFSATPISPDCVVFVTWV-GIMEI  170 (365)
Q Consensus        98 ~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~------~~~~~ls~~p~s~~~~v~v~~~-~~~~~  170 (365)
                      +...++-|++....... .......++++|+.+.+|..+|++....      ...+++      ++.+.++... +....
T Consensus        28 ~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~------~~~iyv~GG~~~~~~~  100 (341)
T PLN02153         28 IAVVGDKLYSFGGELKP-NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV------GTKLYIFGGRDEKREF  100 (341)
T ss_pred             EEEECCEEEEECCccCC-CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE------CCEEEEECCCCCCCcc
Confidence            33457777776553100 0111357999999999999887652111      111111      2333333221 11123


Q ss_pred             EEEEEEecCCCceEEeeeeC-----CccceeeEEEECCEEEEEecCCC------------cEEE-EEecCCceeeeecCC
Q 040662          171 SCISICRPGDTTWTELRFQD-----NYRYVKNLVCADGFLYCSFFSLE------------AIVA-YNVASQNLEILPYPP  232 (365)
Q Consensus       171 ~~~~~~~~g~~~W~~~~~~~-----~~~~~~~~v~~~G~lY~~~l~~~------------g~i~-~d~~~~~~~~i~~p~  232 (365)
                      ..+++|++.+++|+.++...     .......++..++++|+  +.-.            ..+. ||+.+++|+.++.+.
T Consensus       101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~  178 (341)
T PLN02153        101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYV--FGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG  178 (341)
T ss_pred             CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEE--ECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence            46889999999999886421     11234566788999999  7421            1356 999999999776431


Q ss_pred             --CceeceeEEEEeCCcEEEEEEEcC---------CCceEEEEeeCCCCCeEEeccCCC----eEEEeccCCCCCCCCCC
Q 040662          233 --SILFMYKYLTEYDGSLLIFGKVVD---------GSGYRVFTFNRSQMDWFEIESLDD----RVLFTGASCLWVPVEKG  297 (365)
Q Consensus       233 --~~~~~~~~Lve~~G~L~lV~~~~~---------~~~~~V~~ld~~~~~W~~v~~lg~----~~lfvg~~~~~~~~~~n  297 (365)
                        +......-++..+|+++++.....         ...-.|+.+|.++.+|+++..+|.    +...      ..-..++
T Consensus       179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~------~~~~~~~  252 (341)
T PLN02153        179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF------AHAVVGK  252 (341)
T ss_pred             CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee------eeEEECC
Confidence              111122234557899998864320         012358888888999999986542    1110      0113567


Q ss_pred             eEEEeeeC--------------CCceEEEEcCceeeeecc
Q 040662          298 SAFANTVH--------------WFGRYSYIRDVCREFIRK  323 (365)
Q Consensus       298 ~IYf~~~~--------------~~~~~vy~l~~~~~~~~~  323 (365)
                      +||.....              .+...+||+++.+|....
T Consensus       253 ~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        253 YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             EEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            77776531              012468999999988654

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.53  E-value=6.3e-08  Score=60.53  Aligned_cols=35  Identities=37%  Similarity=0.560  Sum_probs=33.3

Q ss_pred             ChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           20 LPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        20 LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      ||+|++.+|+.+|+..|+++++.|||+|+.++.++
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~   35 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH   35 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh
Confidence            79999999999999999999999999999998765

>PLN02193 nitrile-specifier protein

Probab=98.48  E-value=2.8e-05  Score=76.03  Aligned_cols=244  Identities=11%  Similarity=0.029  Sum_probs=134.0

Q ss_pred             EEEcCCC----CceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccc--
Q 040662           70 YLYDPCH----KQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFS--  143 (365)
Q Consensus        70 ~~~~~~~----~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~--  143 (365)
                      .+++|.+    .+|..+... ...|..+........++-|++....... .......++++|+.|.+|..+|+....+  
T Consensus       140 y~~~~~~~~~~~~W~~~~~~-~~~P~pR~~h~~~~~~~~iyv~GG~~~~-~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~  217 (470)
T PLN02193        140 YISLPSTPKLLGKWIKVEQK-GEGPGLRCSHGIAQVGNKIYSFGGEFTP-NQPIDKHLYVFDLETRTWSISPATGDVPHL  217 (470)
T ss_pred             EEecCCChhhhceEEEcccC-CCCCCCccccEEEEECCEEEEECCcCCC-CCCeeCcEEEEECCCCEEEeCCCCCCCCCC
Confidence            3446544    578766420 0013222222233345666666543100 0011246899999999999876531111  


Q ss_pred             --eeEEEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeC---CccceeeEEEECCEEEEEecCCC----
Q 040662          144 --IAKATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQD---NYRYVKNLVCADGFLYCSFFSLE----  213 (365)
Q Consensus       144 --~~~~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~---~~~~~~~~v~~~G~lY~~~l~~~----  213 (365)
                        ....+...    ++.+.++... .......+..|++.+++|+.+....   .-.....++.+++++|+  +.-.    
T Consensus       218 ~~~~~~~v~~----~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv--~GG~~~~~  291 (470)
T PLN02193        218 SCLGVRMVSI----GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV--FGGVSATA  291 (470)
T ss_pred             cccceEEEEE----CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE--ECCCCCCC
Confidence              11111111    2233332211 1113457889999999999986421   11234566778999999  7531    


Q ss_pred             --cEEE-EEecCCceeeeecCC--CceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEeccCCCeEEEeccC
Q 040662          214 --AIVA-YNVASQNLEILPYPP--SILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGAS  288 (365)
Q Consensus       214 --g~i~-~d~~~~~~~~i~~p~--~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~  288 (365)
                        ..+. ||+.+.+|+.++.+.  +......-++..+|+++++........-.||.+|..+.+|.++..+|..-.  .+.
T Consensus       292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~--~R~  369 (470)
T PLN02193        292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS--ERS  369 (470)
T ss_pred             CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC--Ccc
Confidence              2356 999999998776432  111222344556899998876432223468888989999999987753110  000


Q ss_pred             CCCCCCCCCeEEEeeeCC--------------CceEEEEcCceeeeecc
Q 040662          289 CLWVPVEKGSAFANTVHW--------------FGRYSYIRDVCREFIRK  323 (365)
Q Consensus       289 ~~~~~~~~n~IYf~~~~~--------------~~~~vy~l~~~~~~~~~  323 (365)
                      +...-..+|.||+.....              +...+||+++.+|....
T Consensus       370 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~  418 (470)
T PLN02193        370 VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD  418 (470)
T ss_pred             eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence            000012466777664321              12469999999998653

>PLN02153 epithiospecifier protein

Probab=98.47  E-value=4.5e-05  Score=71.48  Aligned_cols=198  Identities=13%  Similarity=0.133  Sum_probs=115.4

Q ss_pred             eEEEcCCCCceEEEecCCCCCCCCCC-CeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcc-----c
Q 040662           69 CYLYDPCHKQKYTVFNSDKNRTTLLG-ARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWRE-----F  142 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~l~~~~~P~~~~-~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~-----~  142 (365)
                      ...||+...+|..++... ..|.... .....+.++-|++......   ......++++||.|++|..++++..     .
T Consensus        52 ~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~  127 (341)
T PLN02153         52 LYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA  127 (341)
T ss_pred             EEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence            467899999998764210 0122111 1123345777777755311   1123578999999999998876511     1


Q ss_pred             ce-eEEEEecCCCCCCeEEEEEeCCC-------cCeEEEEEEecCCCceEEeeeeC---CccceeeEEEECCEEEEEecC
Q 040662          143 SI-AKATFSATPISPDCVVFVTWVGI-------MEISCISICRPGDTTWTELRFQD---NYRYVKNLVCADGFLYCSFFS  211 (365)
Q Consensus       143 ~~-~~~~ls~~p~s~~~~v~v~~~~~-------~~~~~~~~~~~g~~~W~~~~~~~---~~~~~~~~v~~~G~lY~~~l~  211 (365)
                      +. ..++. .    ++.+.++.....       .....+.+|++.+++|+.++.+.   .......++.++|++|+  +.
T Consensus       128 R~~~~~~~-~----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv--~G  200 (341)
T PLN02153        128 RTFHSMAS-D----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV--VY  200 (341)
T ss_pred             ceeeEEEE-E----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE--Ee
Confidence            11 11111 1    123222211110       01246789999999999987532   11223456778999998  63


Q ss_pred             C--------------CcEEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcC---------C-CceEE
Q 040662          212 L--------------EAIVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVD---------G-SGYRV  262 (365)
Q Consensus       212 ~--------------~g~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~---------~-~~~~V  262 (365)
                      -              ...+. ||+.+.+|+.++.    |.++  ...-.+..+++|+++.....         . ..-.|
T Consensus       201 G~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v  278 (341)
T PLN02153        201 GFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR--SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEG  278 (341)
T ss_pred             ccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc--ceeeeEEECCEEEEECcccCCccccccccccccccE
Confidence            1              12466 9999999998753    2222  22233456789999876421         0 12279


Q ss_pred             EEeeCCCCCeEEeccCC
Q 040662          263 FTFNRSQMDWFEIESLD  279 (365)
Q Consensus       263 ~~ld~~~~~W~~v~~lg  279 (365)
                      |.+|.++++|+++...+
T Consensus       279 ~~~d~~~~~W~~~~~~~  295 (341)
T PLN02153        279 YALDTETLVWEKLGECG  295 (341)
T ss_pred             EEEEcCccEEEeccCCC
Confidence            99999999999987543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.47  E-value=7.2e-05  Score=70.22  Aligned_cols=168  Identities=10%  Similarity=0.082  Sum_probs=99.0

Q ss_pred             ccCCeEEEeccccccCCCCccccEEEEcC--CCCCeeeCCCCcc-cceeEEEEecCCCCCCeEEEEEeCCC-------cC
Q 040662          100 SKHGWVLFEGEKNVNSGGRKCSPLFFYSP--FADQIINLPAWRE-FSIAKATFSATPISPDCVVFVTWVGI-------ME  169 (365)
Q Consensus       100 s~~G~l~~~~~~~~~~~~~~~~~~~l~NP--~T~~~~~LP~~~~-~~~~~~~ls~~p~s~~~~v~v~~~~~-------~~  169 (365)
                      ..++-|++.....       ...++.+|+  .+++|..+|+++. .+........    ++.+.++.....       ..
T Consensus        15 ~~~~~vyv~GG~~-------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~----~~~iYv~GG~~~~~~~~~~~~   83 (346)
T TIGR03547        15 IIGDKVYVGLGSA-------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI----DGKLYVFGGIGKANSEGSPQV   83 (346)
T ss_pred             EECCEEEEEcccc-------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE----CCEEEEEeCCCCCCCCCccee
Confidence            4467777765431       245777774  6788999998742 2221111111    123333222110       01


Q ss_pred             eEEEEEEecCCCceEEeeeeCCccc-eeeEE-EECCEEEEEecCCC----------------------------------
Q 040662          170 ISCISICRPGDTTWTELRFQDNYRY-VKNLV-CADGFLYCSFFSLE----------------------------------  213 (365)
Q Consensus       170 ~~~~~~~~~g~~~W~~~~~~~~~~~-~~~~v-~~~G~lY~~~l~~~----------------------------------  213 (365)
                      ...++.|++.+++|+.++.+..... ....+ .++|++|+  +.-.                                  
T Consensus        84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYv--iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T TIGR03547        84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYF--TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP  161 (346)
T ss_pred             cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEE--EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence            3468899999999999873211111 22233 68999999  7531                                  


Q ss_pred             ------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC----CceEEEEeeCCCCCeEEeccCCC
Q 040662          214 ------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG----SGYRVFTFNRSQMDWFEIESLDD  280 (365)
Q Consensus       214 ------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~----~~~~V~~ld~~~~~W~~v~~lg~  280 (365)
                            ..+. ||+.+++|+.++..+.......-++..+|+|+++......    ..+.+|.+|.++.+|.++..|+.
T Consensus       162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~  239 (346)
T TIGR03547       162 EDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP  239 (346)
T ss_pred             hHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence                  2466 9999999998764332112334456678999999865321    22344555556779999998863

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=98.35  E-value=4.8e-05  Score=74.40  Aligned_cols=199  Identities=11%  Similarity=0.133  Sum_probs=118.6

Q ss_pred             eEEEcCCCCceEEEecCCCCCCCCCC-CeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc---ccce
Q 040662           69 CYLYDPCHKQKYTVFNSDKNRTTLLG-ARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR---EFSI  144 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~l~~~~~P~~~~-~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~---~~~~  144 (365)
                      ...||+.+.+|..++... ..|..+. .......++-|++.....   .......++.+||.|++|..++++.   ..+.
T Consensus       195 v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~  270 (470)
T PLN02193        195 LYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS  270 (470)
T ss_pred             EEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCCCCCCcc
Confidence            356899888998654210 0132211 112334577777765532   1112467999999999999987652   1111


Q ss_pred             -eEEEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCc---cceeeEEEECCEEEEEecCC-----Cc
Q 040662          145 -AKATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNY---RYVKNLVCADGFLYCSFFSL-----EA  214 (365)
Q Consensus       145 -~~~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~---~~~~~~v~~~G~lY~~~l~~-----~g  214 (365)
                       ..++. .    ++.++++... .......+..|++.+++|+.++.+...   .....++.++|++|+  +.-     ..
T Consensus       271 ~h~~~~-~----~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyv--iGG~~g~~~~  343 (470)
T PLN02193        271 FHSMAA-D----EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWV--VYGFNGCEVD  343 (470)
T ss_pred             ceEEEE-E----CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEE--EECCCCCccC
Confidence             11111 1    2233332211 112345688999999999988753211   223456778999998  642     13


Q ss_pred             EEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcCC--------Cce--EEEEeeCCCCCeEEeccCC
Q 040662          215 IVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVDG--------SGY--RVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       215 ~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~~--------~~~--~V~~ld~~~~~W~~v~~lg  279 (365)
                      .+. ||+.+.+|+.++.    |.++  ...-.+..+++|+++......        ..+  .+|.+|..+.+|.++..++
T Consensus       344 dv~~yD~~t~~W~~~~~~g~~P~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        344 DVHYYDPVQDKWTQVETFGVRPSER--SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             ceEEEECCCCEEEEeccCCCCCCCc--ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence            466 9999999998753    2232  222334568888888765310        112  5999999999999998776


Q ss_pred             C
Q 040662          280 D  280 (365)
Q Consensus       280 ~  280 (365)
                      .
T Consensus       422 ~  422 (470)
T PLN02193        422 E  422 (470)
T ss_pred             C
Confidence            3

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.30  E-value=0.00015  Score=68.96  Aligned_cols=191  Identities=9%  Similarity=0.035  Sum_probs=107.0

Q ss_pred             EccCCeEEEeccccccCCCCccccEEEEcCC--CCCeeeCCCCcc-cce--eEEEEecCCCCCCeEEEEEeCCC------
Q 040662           99 DSKHGWVLFEGEKNVNSGGRKCSPLFFYSPF--ADQIINLPAWRE-FSI--AKATFSATPISPDCVVFVTWVGI------  167 (365)
Q Consensus        99 ~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~--T~~~~~LP~~~~-~~~--~~~~ls~~p~s~~~~v~v~~~~~------  167 (365)
                      ...++-|++.....       ...++.+++.  +++|..+|+++. ...  ..+.+      ++.+.++.....      
T Consensus        35 ~~~~~~iyv~gG~~-------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~------~~~IYV~GG~~~~~~~~~  101 (376)
T PRK14131         35 AIDNNTVYVGLGSA-------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI------DGKLYVFGGIGKTNSEGS  101 (376)
T ss_pred             EEECCEEEEEeCCC-------CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE------CCEEEEEcCCCCCCCCCc
Confidence            34466766654431       2356777765  578999887632 121  11111      123333221110      


Q ss_pred             -cCeEEEEEEecCCCceEEeeeeCCcc-ceeeEEE-ECCEEEEEecCCC-------------------------------
Q 040662          168 -MEISCISICRPGDTTWTELRFQDNYR-YVKNLVC-ADGFLYCSFFSLE-------------------------------  213 (365)
Q Consensus       168 -~~~~~~~~~~~g~~~W~~~~~~~~~~-~~~~~v~-~~G~lY~~~l~~~-------------------------------  213 (365)
                       .....+..|++.+++|+.++.+.... ....++. .+|++|+  +.-.                               
T Consensus       102 ~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv--~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~  179 (376)
T PRK14131        102 PQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYI--TGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD  179 (376)
T ss_pred             eeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEE--ECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence             01246788999999999987421111 1223333 7999999  7531                               


Q ss_pred             ---------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcC----CCceEEEEeeCCCCCeEEeccCC
Q 040662          214 ---------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVD----GSGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       214 ---------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~----~~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                               ..+. ||+.+++|+.+...|........++..+++|+++.....    ...+.++++|.++.+|.++..|+
T Consensus       180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p  259 (376)
T PRK14131        180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP  259 (376)
T ss_pred             CChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence                     2466 999999999876433212233445667899999886431    12344456666778999999886


Q ss_pred             C-eEEEeccCCCCC--CCCCCeEEEeee
Q 040662          280 D-RVLFTGASCLWV--PVEKGSAFANTV  304 (365)
Q Consensus       280 ~-~~lfvg~~~~~~--~~~~n~IYf~~~  304 (365)
                      . +.-........+  ...+|+||+...
T Consensus       260 ~~~~~~~~~~~~~~~a~~~~~~iyv~GG  287 (376)
T PRK14131        260 PAPGGSSQEGVAGAFAGYSNGVLLVAGG  287 (376)
T ss_pred             CCCcCCcCCccceEeceeECCEEEEeec
Confidence            4 211111000001  236778888753

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.27  E-value=9.6e-05  Score=68.69  Aligned_cols=151  Identities=10%  Similarity=0.074  Sum_probs=88.4

Q ss_pred             ccEEEE-cCCCC-CeeeCCCCcccc-eeEEEEecCCCCCCeEEEEEeCC-CcCeEEEEEEecCCCce----EEeeeeCCc
Q 040662          121 SPLFFY-SPFAD-QIINLPAWREFS-IAKATFSATPISPDCVVFVTWVG-IMEISCISICRPGDTTW----TELRFQDNY  192 (365)
Q Consensus       121 ~~~~l~-NP~T~-~~~~LP~~~~~~-~~~~~ls~~p~s~~~~v~v~~~~-~~~~~~~~~~~~g~~~W----~~~~~~~~~  192 (365)
                      ..++++ +|... +|..+++++... +..+ .+.    ++.+.++.... ......+..|+..++.|    +.++.....
T Consensus        39 ~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~-~~~----~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~  113 (323)
T TIGR03548        39 KGIYIAKDENSNLKWVKDGQLPYEAAYGAS-VSV----ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT  113 (323)
T ss_pred             eeeEEEecCCCceeEEEcccCCccccceEE-EEE----CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC
Confidence            357766 45433 688877663322 2211 111    23444432211 11345677888888887    343321111


Q ss_pred             cceeeEEEECCEEEEEecCCC------cEEE-EEecCCceeeeec-CCCceeceeEEEEeCCcEEEEEEEcCCCceEEEE
Q 040662          193 RYVKNLVCADGFLYCSFFSLE------AIVA-YNVASQNLEILPY-PPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFT  264 (365)
Q Consensus       193 ~~~~~~v~~~G~lY~~~l~~~------g~i~-~d~~~~~~~~i~~-p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~  264 (365)
                      .....++.++|++|+  +.-.      ..+. ||+.+++|+.++. |... ......+..+|+|+++..........++.
T Consensus       114 ~~~~~~~~~~~~iYv--~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~  190 (323)
T TIGR03548       114 FENGSACYKDGTLYV--GGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYK  190 (323)
T ss_pred             ccCceEEEECCEEEE--EeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEE
Confidence            123466788999999  7531      2466 9999999998763 3211 22334456789999987643222345788


Q ss_pred             eeCCCCCeEEeccCC
Q 040662          265 FNRSQMDWFEIESLD  279 (365)
Q Consensus       265 ld~~~~~W~~v~~lg  279 (365)
                      .|.++.+|.++..+.
T Consensus       191 yd~~~~~W~~~~~~~  205 (323)
T TIGR03548       191 YSPKKNQWQKVADPT  205 (323)
T ss_pred             EecCCCeeEECCCCC
Confidence            898899999998763

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.19  E-value=0.00016  Score=67.20  Aligned_cols=171  Identities=10%  Similarity=0.091  Sum_probs=98.1

Q ss_pred             EEEcCCCCce----EEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcc-cc
Q 040662           70 YLYDPCHKQK----YTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWRE-FS  143 (365)
Q Consensus        70 ~~~~~~~~~~----~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~-~~  143 (365)
                      ..||+.+.+|    ..++ +     |...........+|-|++.....   .+.....+..+||.|++|..+|+++. .+
T Consensus        91 ~~~d~~~~~w~~~~~~~~~l-----p~~~~~~~~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p~~~r  162 (323)
T TIGR03548        91 YRITLDESKEELICETIGNL-----PFTFENGSACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQEWFELPDFPGEPR  162 (323)
T ss_pred             EEEEEcCCceeeeeeEcCCC-----CcCccCceEEEECCEEEEEeCcC---CCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence            4577777776    3322 2     32222222334578887775531   11124579999999999999987632 22


Q ss_pred             eeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeC--Ccc----ceeeEEEECCEEEEEecCCC----
Q 040662          144 IAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQD--NYR----YVKNLVCADGFLYCSFFSLE----  213 (365)
Q Consensus       144 ~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~----~~~~~v~~~G~lY~~~l~~~----  213 (365)
                      ...++...    ++.+.++..........+..|++.+++|+.++...  ..+    ....+++.+|++|+  +.-.    
T Consensus       163 ~~~~~~~~----~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv--~GG~~~~~  236 (323)
T TIGR03548       163 VQPVCVKL----QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLC--IGGFNKDV  236 (323)
T ss_pred             CcceEEEE----CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEE--ECCcCHHH
Confidence            21111111    22333322211112235679999999999987421  111    12334566899998  7531    


Q ss_pred             ----------------------------------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEE
Q 040662          214 ----------------------------------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKV  254 (365)
Q Consensus       214 ----------------------------------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~  254 (365)
                                                        ..+. ||+.+++|+.++..+.......-++..+|+|+++...
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       237 YNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             HHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence                                              2467 9999999998873221122344567789999998864

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.03  E-value=2.7e-05  Score=64.86  Aligned_cols=80  Identities=14%  Similarity=0.261  Sum_probs=57.5

Q ss_pred             EEEECCEEEEEecCCC--c----EEE-EEecCCce-eeeecCCCce--eceeEEE-EeCCcEEEEEEEcCCCceEEEEee
Q 040662          198 LVCADGFLYCSFFSLE--A----IVA-YNVASQNL-EILPYPPSIL--FMYKYLT-EYDGSLLIFGKVVDGSGYRVFTFN  266 (365)
Q Consensus       198 ~v~~~G~lY~~~l~~~--g----~i~-~d~~~~~~-~~i~~p~~~~--~~~~~Lv-e~~G~L~lV~~~~~~~~~~V~~ld  266 (365)
                      .|++||.+||  ++..  +    .|+ ||+.+++| +.++.|....  .....|. ..+|+|+++........++||.|+
T Consensus         1 gV~vnG~~hW--~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~   78 (164)
T PF07734_consen    1 GVFVNGALHW--LAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK   78 (164)
T ss_pred             CEEECCEEEe--eEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence            3899999977  8752  1    577 99999999 6777665432  2334553 346789998765545579999999


Q ss_pred             CC---CCCeEEeccCC
Q 040662          267 RS---QMDWFEIESLD  279 (365)
Q Consensus       267 ~~---~~~W~~v~~lg  279 (365)
                      +.   ..+|+|+-+++
T Consensus        79 ~~~~~~~SWtK~~~i~   94 (164)
T PF07734_consen   79 KYGYGKESWTKLFTID   94 (164)
T ss_pred             eeccCcceEEEEEEEe
Confidence            52   56899988765

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.92  E-value=0.0025  Score=59.81  Aligned_cols=218  Identities=15%  Similarity=0.080  Sum_probs=118.4

Q ss_pred             EEEcC--CCCceEEEe-cCCCCCCCC-CCCeEEEccCCeEEEeccccccC-CC--CccccEEEEcCCCCCeeeCCC-Ccc
Q 040662           70 YLYDP--CHKQKYTVF-NSDKNRTTL-LGARPLDSKHGWVLFEGEKNVNS-GG--RKCSPLFFYSPFADQIINLPA-WRE  141 (365)
Q Consensus        70 ~~~~~--~~~~~~~~~-l~~~~~P~~-~~~~~~~s~~G~l~~~~~~~~~~-~~--~~~~~~~l~NP~T~~~~~LP~-~~~  141 (365)
                      ..||+  ..++|..+. +     |.. +....+.+.+|-|++........ .+  .....+..+||.++.|..++. .+.
T Consensus        32 ~~~d~~~~~~~W~~l~~~-----p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~  106 (346)
T TIGR03547        32 YKLDLKKPSKGWQKIADF-----PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPV  106 (346)
T ss_pred             EEEECCCCCCCceECCCC-----CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCC
Confidence            45664  456787664 3     421 21222445588888876642100 00  013468899999999999863 211


Q ss_pred             cceeEEEEecCCCCCCeEEEEEeCCCc-----------------------------------CeEEEEEEecCCCceEEe
Q 040662          142 FSIAKATFSATPISPDCVVFVTWVGIM-----------------------------------EISCISICRPGDTTWTEL  186 (365)
Q Consensus       142 ~~~~~~~ls~~p~s~~~~v~v~~~~~~-----------------------------------~~~~~~~~~~g~~~W~~~  186 (365)
                      .....++...   .+..+.++......                                   ....++.|++.+++|+.+
T Consensus       107 ~~~~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~  183 (346)
T TIGR03547       107 GLLGASGFSL---HNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL  183 (346)
T ss_pred             cccceeEEEE---eCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence            1111111100   01232222111000                                   014689999999999998


Q ss_pred             eeeCC-ccceeeEEEECCEEEEEecCCC-------cEEE-EEe--cCCceeeeecC-CCce-----eceeEEEEeCCcEE
Q 040662          187 RFQDN-YRYVKNLVCADGFLYCSFFSLE-------AIVA-YNV--ASQNLEILPYP-PSIL-----FMYKYLTEYDGSLL  249 (365)
Q Consensus       187 ~~~~~-~~~~~~~v~~~G~lY~~~l~~~-------g~i~-~d~--~~~~~~~i~~p-~~~~-----~~~~~Lve~~G~L~  249 (365)
                      +.... ......++.++|++|+  +.-.       ..+. ||+  +..+|+.++.. .+..     ......+..+|+|+
T Consensus       184 ~~~p~~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iy  261 (346)
T TIGR03547       184 GENPFLGTAGSAIVHKGNKLLL--INGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLL  261 (346)
T ss_pred             ccCCCCcCCCceEEEECCEEEE--EeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEE
Confidence            74321 1234467788999999  7421       1233 554  55589876532 2211     11233566799999


Q ss_pred             EEEEEcCC--------------------CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeee
Q 040662          250 IFGKVVDG--------------------SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTV  304 (365)
Q Consensus       250 lV~~~~~~--------------------~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~  304 (365)
                      ++......                    ..+++|..  ++.+|+++..|+...-..+     .-..+|.||++..
T Consensus       262 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~--~~~~W~~~~~lp~~~~~~~-----~~~~~~~iyv~GG  329 (346)
T TIGR03547       262 VAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL--DNGKWSKVGKLPQGLAYGV-----SVSWNNGVLLIGG  329 (346)
T ss_pred             EeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe--cCCcccccCCCCCCceeeE-----EEEcCCEEEEEec
Confidence            98764210                    13455554  5679999998874221111     0136899998864

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.34  E-value=0.016  Score=55.07  Aligned_cols=193  Identities=14%  Similarity=0.133  Sum_probs=102.1

Q ss_pred             EEEcCCCCceEEEecCCCCCCCCC-CCeEEEccCCeEEEeccccccC-CC------------------------------
Q 040662           70 YLYDPCHKQKYTVFNSDKNRTTLL-GARPLDSKHGWVLFEGEKNVNS-GG------------------------------  117 (365)
Q Consensus        70 ~~~~~~~~~~~~~~l~~~~~P~~~-~~~~~~s~~G~l~~~~~~~~~~-~~------------------------------  117 (365)
                      ..||+..++|..+....   |... ++..+...+|-|++........ .+                              
T Consensus       109 ~~YD~~~n~W~~~~~~~---p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~  185 (376)
T PRK14131        109 YKYDPKTNSWQKLDTRS---PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY  185 (376)
T ss_pred             EEEeCCCCEEEeCCCCC---CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence            56899999998875210   2211 2222222578888776542100 00                              


Q ss_pred             CccccEEEEcCCCCCeeeCCCCcccc-eeEEEEecCCCCCCeEEEEEeC--CCcCeEEE--EEEecCCCceEEeee-eCC
Q 040662          118 RKCSPLFFYSPFADQIINLPAWREFS-IAKATFSATPISPDCVVFVTWV--GIMEISCI--SICRPGDTTWTELRF-QDN  191 (365)
Q Consensus       118 ~~~~~~~l~NP~T~~~~~LP~~~~~~-~~~~~ls~~p~s~~~~v~v~~~--~~~~~~~~--~~~~~g~~~W~~~~~-~~~  191 (365)
                      .....+.++||.|++|..+++++... ....+...    ++.+.++...  .......+  ..+++.++.|..++. |..
T Consensus       186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~----~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~  261 (376)
T PRK14131        186 FFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK----GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPA  261 (376)
T ss_pred             CcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE----CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCC
Confidence            00246899999999999988763211 11111111    2233333221  10011122  234678899998874 211


Q ss_pred             c----c-c-e-eeEEEECCEEEEEecCCC-----------------------cEEE-EEecCCceeeeec-CCCceecee
Q 040662          192 Y----R-Y-V-KNLVCADGFLYCSFFSLE-----------------------AIVA-YNVASQNLEILPY-PPSILFMYK  239 (365)
Q Consensus       192 ~----~-~-~-~~~v~~~G~lY~~~l~~~-----------------------g~i~-~d~~~~~~~~i~~-p~~~~~~~~  239 (365)
                      .    + . . ...+..+|++|+  +.-.                       -.+. ||+.+++|+.+.. |.+.  ...
T Consensus       262 ~~~~~~~~~~~~~a~~~~~~iyv--~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~  337 (376)
T PRK14131        262 PGGSSQEGVAGAFAGYSNGVLLV--AGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYG  337 (376)
T ss_pred             CcCCcCCccceEeceeECCEEEE--eeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cce
Confidence            0    0 0 1 124678999998  6421                       0133 8999999987653 2232  223


Q ss_pred             EEEEeCCcEEEEEEEcCC--CceEEEEeeCCCCCeE
Q 040662          240 YLTEYDGSLLIFGKVVDG--SGYRVFTFNRSQMDWF  273 (365)
Q Consensus       240 ~Lve~~G~L~lV~~~~~~--~~~~V~~ld~~~~~W~  273 (365)
                      ..+..+|+|+++......  ..-.|+.++.+.+.++
T Consensus       338 ~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        338 VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence            356779999999875321  2235655554444544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.00027  Score=62.83  Aligned_cols=39  Identities=33%  Similarity=0.517  Sum_probs=37.0

Q ss_pred             CCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           16 SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        16 ~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      .|-.||+||++.|++.|+.+++++...|||+|+.+.++.
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de  135 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE  135 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence            599999999999999999999999999999999998774

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=95.78  E-value=0.13  Score=47.95  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=69.4

Q ss_pred             eEEEECCEEEEEecCC---CcEEE-EEecCCceeeeec---CCCceeceeEEEEe-CCcEEEEEEEcCC-------CceE
Q 040662          197 NLVCADGFLYCSFFSL---EAIVA-YNVASQNLEILPY---PPSILFMYKYLTEY-DGSLLIFGKVVDG-------SGYR  261 (365)
Q Consensus       197 ~~v~~~G~lY~~~l~~---~g~i~-~d~~~~~~~~i~~---p~~~~~~~~~Lve~-~G~L~lV~~~~~~-------~~~~  261 (365)
                      ..+.++|-||-  -..   ++.+. ||....+|+.+..   |+|+  +....|+. .|.|+|.+.-...       -.-.
T Consensus        80 ELilfGGEf~n--gqkT~vYndLy~Yn~k~~eWkk~~spn~P~pR--sshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD  155 (521)
T KOG1230|consen   80 ELILFGGEFYN--GQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPR--SSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD  155 (521)
T ss_pred             eeEEecceeec--ceeEEEeeeeeEEeccccceeEeccCCCcCCC--ccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence            34455555554  211   34566 8999999987643   3343  33333433 4677776643211       2346


Q ss_pred             EEEeeCCCCCeEEeccCCC-------e--------EEEeccCCCCCCCCCCeEEEeeeCCCceEEEEcCceeeeecc
Q 040662          262 VFTFNRSQMDWFEIESLDD-------R--------VLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRK  323 (365)
Q Consensus       262 V~~ld~~~~~W~~v~~lg~-------~--------~lfvg~~~~~~~~~~n~IYf~~~~~~~~~vy~l~~~~~~~~~  323 (365)
                      .|.+|..+++|+++..=|+       |        .||-|.+    ...++.|||.+     ..+|||++-+|.-.+
T Consensus       156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFh----d~nr~y~YyND-----vy~FdLdtykW~Kle  223 (521)
T KOG1230|consen  156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFH----DSNRDYIYYND-----VYAFDLDTYKWSKLE  223 (521)
T ss_pred             eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEccee----cCCCceEEeee-----eEEEeccceeeeecc
Confidence            8999999999999985442       1        1222211    23677788865     689999999887544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.70  E-value=0.29  Score=43.39  Aligned_cols=122  Identities=14%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             eEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEE
Q 040662           96 RPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISI  175 (365)
Q Consensus        96 ~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~  175 (365)
                      -++..-+|=|.++.-.        .+.+..+||+++.--.+|+........-...+||.   -.+.++..   ....++.
T Consensus       193 Gi~atpdGsvwyasla--------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi---g~~wittw---g~g~l~r  258 (353)
T COG4257         193 GICATPDGSVWYASLA--------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI---GRAWITTW---GTGSLHR  258 (353)
T ss_pred             ceEECCCCcEEEEecc--------ccceEEcccccCCcceecCCCcccccccccccCcc---CcEEEecc---CCceeeE
Confidence            4556667877777554        36788999999977677766332221122334443   22333332   3467889


Q ss_pred             EecCCCceEEeeeeCCccceeeEEEE--CCEEEEEecCC-CcEEE-EEecCCceeeeecCCCc
Q 040662          176 CRPGDTTWTELRFQDNYRYVKNLVCA--DGFLYCSFFSL-EAIVA-YNVASQNLEILPYPPSI  234 (365)
Q Consensus       176 ~~~g~~~W~~~~~~~~~~~~~~~v~~--~G~lY~~~l~~-~g~i~-~d~~~~~~~~i~~p~~~  234 (365)
                      |++.+.+|.+.+.|..-....+ +++  .|+++.  -+- .|.|+ ||+.+.+|++++.|.+.
T Consensus       259 fdPs~~sW~eypLPgs~arpys-~rVD~~grVW~--sea~agai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         259 FDPSVTSWIEYPLPGSKARPYS-MRVDRHGRVWL--SEADAGAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             eCcccccceeeeCCCCCCCcce-eeeccCCcEEe--eccccCceeecCcccceEEEecCCCCC
Confidence            9999999999987642222222 333  466654  333 47899 99999999999887664

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=95.68  E-value=0.071  Score=46.84  Aligned_cols=166  Identities=15%  Similarity=0.220  Sum_probs=96.1

Q ss_pred             CCeEEEeccccccCCCCccccEEEEcCCCCCeee------CCCCcccceeEEEEecCCCCCCeEEEEEeCC--CcCeEEE
Q 040662          102 HGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIIN------LPAWREFSIAKATFSATPISPDCVVFVTWVG--IMEISCI  173 (365)
Q Consensus       102 ~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~------LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~--~~~~~~~  173 (365)
                      .+-+++-...+  .+....+.++-++|-|.+|.+      +|..++ ...+++++.    ..| ++-.+..  +.....+
T Consensus        88 ~d~~yvWGGRN--D~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRD-GHsAcV~gn----~My-iFGGye~~a~~FS~d~  159 (392)
T KOG4693|consen   88 QDKAYVWGGRN--DDEGACNLLYEFDPETNVWKKPEVEGFVPGARD-GHSACVWGN----QMY-IFGGYEEDAQRFSQDT  159 (392)
T ss_pred             cceEEEEcCcc--CcccccceeeeeccccccccccceeeecCCccC-CceeeEECc----EEE-EecChHHHHHhhhccc
Confidence            45555554432  222245678899999999864      344322 122222211    011 1101111  1123567


Q ss_pred             EEEecCCCceEEeee---eCCccceeeEEEECCEEEEEecCC---------------CcEEE-EEecCCceeeeec-CC-
Q 040662          174 SICRPGDTTWTELRF---QDNYRYVKNLVCADGFLYCSFFSL---------------EAIVA-YNVASQNLEILPY-PP-  232 (365)
Q Consensus       174 ~~~~~g~~~W~~~~~---~~~~~~~~~~v~~~G~lY~~~l~~---------------~g~i~-~d~~~~~~~~i~~-p~-  232 (365)
                      +..+..+-.|+.+..   |.....+...+..+|.+|.  +.-               ...|+ +|+.++.|..-+. +. 
T Consensus       160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYi--FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~  237 (392)
T KOG4693|consen  160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYI--FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK  237 (392)
T ss_pred             eeEeccceeeeehhccCCCchhhhhhhhhhccceEEE--eccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence            788888899998874   3333345566677888887  531               12577 9999999964322 11 


Q ss_pred             CceeceeEEEEeCCcEEEEEEEcCC--C-ceEEEEeeCCCCCeEEecc
Q 040662          233 SILFMYKYLTEYDGSLLIFGKVVDG--S-GYRVFTFNRSQMDWFEIES  277 (365)
Q Consensus       233 ~~~~~~~~Lve~~G~L~lV~~~~~~--~-~~~V~~ld~~~~~W~~v~~  277 (365)
                      |.+......-..+|++++...+...  . --++|.+|..+..|..++-
T Consensus       238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~  285 (392)
T KOG4693|consen  238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV  285 (392)
T ss_pred             CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence            3333333344579999998877532  2 3459999999999999874

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=95.62  E-value=0.4  Score=47.13  Aligned_cols=150  Identities=21%  Similarity=0.234  Sum_probs=92.8

Q ss_pred             ccEEEEcCCCCCeeeCCCCccc----ceeEEEEecCCCCCCeEEEEEeCCC-c-CeEEEEEEecCCCceEEeeeeCC--c
Q 040662          121 SPLFFYSPFADQIINLPAWREF----SIAKATFSATPISPDCVVFVTWVGI-M-EISCISICRPGDTTWTELRFQDN--Y  192 (365)
Q Consensus       121 ~~~~l~NP~T~~~~~LP~~~~~----~~~~~~ls~~p~s~~~~v~v~~~~~-~-~~~~~~~~~~g~~~W~~~~~~~~--~  192 (365)
                      ..++.+|+.|++|..+.+..+.    ..+.++..     ++++++....+. . ....+++|+..+..|..+.....  .
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~  213 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS  213 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccceEEEE-----CCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence            4799999999999877554221    11222211     234444222111 1 35678999999999999985322  2


Q ss_pred             -cceeeEEEECCEEEEEecCC-C------cEEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcCC--
Q 040662          193 -RYVKNLVCADGFLYCSFFSL-E------AIVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVDG--  257 (365)
Q Consensus       193 -~~~~~~v~~~G~lY~~~l~~-~------g~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~~--  257 (365)
                       .....++.+++++++  +.- .      +.+. +|+.+..|..+..    |.++  ....++..+..++++......  
T Consensus       214 pR~gH~~~~~~~~~~v--~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~gG~~~~~~  289 (482)
T KOG0379|consen  214 PRYGHAMVVVGNKLLV--FGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFGGGTDPKQ  289 (482)
T ss_pred             CCCCceEEEECCeEEE--EeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEcCCccccc
Confidence             245677788888877  432 1      2466 8998888874331    2232  333344445556666655432  


Q ss_pred             -CceEEEEeeCCCCCeEEeccCC
Q 040662          258 -SGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       258 -~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                       .--++|.++.++..|.++...+
T Consensus       290 ~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  290 EPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             ccccccccccccccceeeeeccc
Confidence             3457899998889999999887

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=95.49  E-value=0.43  Score=42.12  Aligned_cols=151  Identities=13%  Similarity=0.140  Sum_probs=88.4

Q ss_pred             cccEEEEcCCCCCeeeCCCCc-c----cceeEEEEecCCCCCCeEEE-----EEeCCC---c-CeEEEEEEecCCCceEE
Q 040662          120 CSPLFFYSPFADQIINLPAWR-E----FSIAKATFSATPISPDCVVF-----VTWVGI---M-EISCISICRPGDTTWTE  185 (365)
Q Consensus       120 ~~~~~l~NP~T~~~~~LP~~~-~----~~~~~~~ls~~p~s~~~~v~-----v~~~~~---~-~~~~~~~~~~g~~~W~~  185 (365)
                      +-+++++|..+-+|..+||-- .    ..+..+-+  . .-++-+|.     ..+.+.   . ....+.-|++.++.|..
T Consensus        43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPy--q-RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~  119 (392)
T KOG4693|consen   43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPY--Q-RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKK  119 (392)
T ss_pred             cceeEEeeccceeEEecCcccccccccCCCCccch--h-hcCceEEEEcceEEEEcCccCcccccceeeeeccccccccc
Confidence            467999999999999999830 0    01110000  0 01122222     122221   1 23345678999999998


Q ss_pred             eeeeCC---ccceeeEEEECCEEEEEecCC--------CcEEE-EEecCCceeeeec--CCCceeceeEEEEeCCcEEEE
Q 040662          186 LRFQDN---YRYVKNLVCADGFLYCSFFSL--------EAIVA-YNVASQNLEILPY--PPSILFMYKYLTEYDGSLLIF  251 (365)
Q Consensus       186 ~~~~~~---~~~~~~~v~~~G~lY~~~l~~--------~g~i~-~d~~~~~~~~i~~--p~~~~~~~~~Lve~~G~L~lV  251 (365)
                      ......   .....+.++.+..+|.  +.-        +..+. +|+++.+|+.+..  .|+++....--+..+|..++.
T Consensus       120 p~v~G~vPgaRDGHsAcV~gn~Myi--FGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiF  197 (392)
T KOG4693|consen  120 PEVEGFVPGARDGHSACVWGNQMYI--FGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIF  197 (392)
T ss_pred             cceeeecCCccCCceeeEECcEEEE--ecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEe
Confidence            764311   2234566778888888  642        23577 9999999998864  234322212223345777777


Q ss_pred             EEEcCC----------CceEEEEeeCCCCCeEEe
Q 040662          252 GKVVDG----------SGYRVFTFNRSQMDWFEI  275 (365)
Q Consensus       252 ~~~~~~----------~~~~V~~ld~~~~~W~~v  275 (365)
                      ....+.          -.-.|..||..++.|.+-
T Consensus       198 GGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~  231 (392)
T KOG4693|consen  198 GGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT  231 (392)
T ss_pred             ccccccCCCccchhhhhcceeEEEeccccccccC
Confidence            655431          234577788888999875

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=93.97  E-value=1.5  Score=43.20  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=88.9

Q ss_pred             cEEEEcCCCCCeeeCCCCcccc-----eeEEEEecCCCCCCeEEEEEeCC--CcCeEEEEEEecCCCceEEeeeeCC---
Q 040662          122 PLFFYSPFADQIINLPAWREFS-----IAKATFSATPISPDCVVFVTWVG--IMEISCISICRPGDTTWTELRFQDN---  191 (365)
Q Consensus       122 ~~~l~NP~T~~~~~LP~~~~~~-----~~~~~ls~~p~s~~~~v~v~~~~--~~~~~~~~~~~~g~~~W~~~~~~~~---  191 (365)
                      .++++|--+..|......-..+     ...+++      ++..+++....  ......++.|+..+..|+.+..-..   
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~------~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~  162 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV------GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP  162 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEE------CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC
Confidence            4999999997776543321111     111111      12333322111  1124578999999999999874211   


Q ss_pred             ccceeeEEEECCEEEEEecCC-------CcEEE-EEecCCceeeeecC--CCceeceeEEEEeCCcEEEEEEEcCC--Cc
Q 040662          192 YRYVKNLVCADGFLYCSFFSL-------EAIVA-YNVASQNLEILPYP--PSILFMYKYLTEYDGSLLIFGKVVDG--SG  259 (365)
Q Consensus       192 ~~~~~~~v~~~G~lY~~~l~~-------~g~i~-~d~~~~~~~~i~~p--~~~~~~~~~Lve~~G~L~lV~~~~~~--~~  259 (365)
                      ......++.++.++|+  ..-       ...+. ||+.+.+|..+...  .|......-++..+++++++.....+  .-
T Consensus       163 ~r~~Hs~~~~g~~l~v--fGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l  240 (482)
T KOG0379|consen  163 PRAGHSATVVGTKLVV--FGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYL  240 (482)
T ss_pred             CcccceEEEECCEEEE--ECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCcee
Confidence            2235567777888887  642       12466 89999999877542  22212333445557777777655422  33


Q ss_pred             eEEEEeeCCCCCeEEeccCC
Q 040662          260 YRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       260 ~~V~~ld~~~~~W~~v~~lg  279 (365)
                      -.+|.||..+.+|.++...|
T Consensus       241 ~D~~~ldl~~~~W~~~~~~g  260 (482)
T KOG0379|consen  241 NDVHILDLSTWEWKLLPTGG  260 (482)
T ss_pred             cceEeeecccceeeeccccC
Confidence            46999999889999766544

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=93.73  E-value=1.5  Score=41.28  Aligned_cols=108  Identities=14%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             eEEEEEEecCCCceEEeeeeCC-cc-ceeeEEEE-CCEEEEE---ecCC-------CcEEE-EEecCCceeeeecCC-Cc
Q 040662          170 ISCISICRPGDTTWTELRFQDN-YR-YVKNLVCA-DGFLYCS---FFSL-------EAIVA-YNVASQNLEILPYPP-SI  234 (365)
Q Consensus       170 ~~~~~~~~~g~~~W~~~~~~~~-~~-~~~~~v~~-~G~lY~~---~l~~-------~g~i~-~d~~~~~~~~i~~p~-~~  234 (365)
                      ...+.+|....++|+.+..|.. .+ ....+|.+ .|.+|.|   |.+.       +-.+. ||+.+.+|+.+..+- |.
T Consensus        97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS  176 (521)
T KOG1230|consen   97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS  176 (521)
T ss_pred             eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence            3467789999999999986521 22 23344444 5788771   1121       12355 999999999887642 33


Q ss_pred             eeceeEEEEeCCcEEEEEEEcCC-----CceEEEEeeCCCCCeEEecc
Q 040662          235 LFMYKYLTEYDGSLLIFGKVVDG-----SGYRVFTFNRSQMDWFEIES  277 (365)
Q Consensus       235 ~~~~~~Lve~~G~L~lV~~~~~~-----~~~~V~~ld~~~~~W~~v~~  277 (365)
                      ......+|.+.-+|.+.+...+.     -.=.||.+|.++-+|.+++-
T Consensus       177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep  224 (521)
T KOG1230|consen  177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP  224 (521)
T ss_pred             CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence            33556678888888888776542     12348888888999999986

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.30  E-value=0.099  Score=47.51  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=34.6

Q ss_pred             CCCh----HHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           18 SDLP----LEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        18 ~~LP----~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      ..||    ++|.+.||.-|...||..+..|||+|+.+++++
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg  116 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG  116 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc
Confidence            4589    999999999999999999999999999999876

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=92.16  E-value=0.28  Score=31.40  Aligned_cols=39  Identities=23%  Similarity=0.521  Sum_probs=30.8

Q ss_pred             EEEeCCcEEEEEEE--c--CCCceEEEEeeCCCCCeEEeccCC
Q 040662          241 LTEYDGSLLIFGKV--V--DGSGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       241 Lve~~G~L~lV~~~--~--~~~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      .+..+++|+++...  .  ....-.||.+|.++.+|.++..+|
T Consensus         7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            45568999999877  1  125677999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.78  E-value=0.089  Score=47.41  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             CCChHHHHHHHHhcCC-----hhhhhhhhhcchhhHHhhccC
Q 040662           18 SDLPLEIINSIVSRLY-----VVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        18 ~~LP~Dll~~Il~rLp-----~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      +.||+|||..|+.+.=     ..++-++.+|||.|+-++..+
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~  149 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP  149 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence            5699999999999863     489999999999999998775

>PF13964 Kelch_6: Kelch motif

Probab=90.36  E-value=0.54  Score=30.13  Aligned_cols=40  Identities=13%  Similarity=0.281  Sum_probs=31.9

Q ss_pred             EEEEeCCcEEEEEEEcC--CCceEEEEeeCCCCCeEEeccCC
Q 040662          240 YLTEYDGSLLIFGKVVD--GSGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       240 ~Lve~~G~L~lV~~~~~--~~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      .++..+|+|++++....  ...-.||.+|.++++|+++.+|.
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            45667899999987654  23467999999999999999886

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.47  E-value=0.99  Score=28.27  Aligned_cols=41  Identities=10%  Similarity=0.197  Sum_probs=32.4

Q ss_pred             eEEEEeCCcEEEEEEEcC-C-CceEEEEeeCCCCCeEEeccCC
Q 040662          239 KYLTEYDGSLLIFGKVVD-G-SGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       239 ~~Lve~~G~L~lV~~~~~-~-~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      .-.+..+++|++++.... . ..-.|+.+|..+++|+++.+|+
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            345667999999998765 2 4466999999999999998764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=82.68  E-value=4.1  Score=25.87  Aligned_cols=39  Identities=18%  Similarity=0.225  Sum_probs=26.9

Q ss_pred             ccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc
Q 040662          100 SKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR  140 (365)
Q Consensus       100 s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~  140 (365)
                      +.+|-|++..+....  ......+.++||.|++|.++|+++
T Consensus         9 ~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    9 VVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             EECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCC
Confidence            345666666554210  223578999999999999999874

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=81.99  E-value=1.2  Score=42.02  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=35.7

Q ss_pred             CCCCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           14 RGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        14 ~~~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      ...| .||.|++..|++.|..+++.|.+.+|+.|.-.+.+-
T Consensus        70 ~~~~-~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   70 SISR-SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             cccc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            3455 599999999999999999999999999999888764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=80.84  E-value=36  Score=29.31  Aligned_cols=207  Identities=13%  Similarity=0.106  Sum_probs=104.2

Q ss_pred             eEEEcCCCCceE-EEecCCCCCCCCCCCeEEEc-cCCeEEEeccccccCCCCccccEEEEcCCCCCee---eCCCCcccc
Q 040662           69 CYLYDPCHKQKY-TVFNSDKNRTTLLGARPLDS-KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQII---NLPAWREFS  143 (365)
Q Consensus        69 ~~~~~~~~~~~~-~~~l~~~~~P~~~~~~~~~s-~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~---~LP~~~~~~  143 (365)
                      ...+|+.+++.. +..+.    +...+...... .+|.+++....         +.++.+|+.||+.+   .++..  ..
T Consensus         5 l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~~---------~~l~~~d~~tG~~~W~~~~~~~--~~   69 (238)
T PF13360_consen    5 LSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASGD---------GNLYALDAKTGKVLWRFDLPGP--IS   69 (238)
T ss_dssp             EEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEETT---------SEEEEEETTTSEEEEEEECSSC--GG
T ss_pred             EEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcCC---------CEEEEEECCCCCEEEEeecccc--cc
Confidence            456788776533 33441    22222221133 58888888554         78999999999853   44332  11


Q ss_pred             eeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEe--cCCCceEE-eee-e-CCccceeeEEEECCEEEEEecCCCcEEE-
Q 040662          144 IAKATFSATPISPDCVVFVTWVGIMEISCISICR--PGDTTWTE-LRF-Q-DNYRYVKNLVCADGFLYCSFFSLEAIVA-  217 (365)
Q Consensus       144 ~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~--~g~~~W~~-~~~-~-~~~~~~~~~v~~~G~lY~~~l~~~g~i~-  217 (365)
                      ...+ .     .++-+++.. ..    ..+..++  .|.-.|+. ... + ..........+.++.+|+  ....|.|+ 
T Consensus        70 ~~~~-~-----~~~~v~v~~-~~----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~l~~  136 (238)
T PF13360_consen   70 GAPV-V-----DGGRVYVGT-SD----GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV--GTSSGKLVA  136 (238)
T ss_dssp             SGEE-E-----ETTEEEEEE-TT----SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE--EETCSEEEE
T ss_pred             ceee-e-----ccccccccc-ce----eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE--EeccCcEEE
Confidence            1111 1     122333322 21    1555565  45568985 332 1 111223455556888888  77778888 


Q ss_pred             EEecCCc--eee-eecCCCce------eceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCC--eEEeccCCCeEE-Ee
Q 040662          218 YNVASQN--LEI-LPYPPSIL------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMD--WFEIESLDDRVL-FT  285 (365)
Q Consensus       218 ~d~~~~~--~~~-i~~p~~~~------~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~--W~~v~~lg~~~l-fv  285 (365)
                      +|+.+.+  |+. +..+....      .....++-.+|.+++.. ..  .  .+..+|.++.+  |. .. +++..- . 
T Consensus       137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~--g--~~~~~d~~tg~~~w~-~~-~~~~~~~~-  208 (238)
T PF13360_consen  137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSS-GD--G--RVVAVDLATGEKLWS-KP-ISGIYSLP-  208 (238)
T ss_dssp             EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEEC-CT--S--SEEEEETTTTEEEEE-EC-SS-ECECE-
T ss_pred             EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEc-CC--C--eEEEEECCCCCEEEE-ec-CCCccCCc-
Confidence            9988763  543 22222110      01122333356444322 11  1  15666665543  83 33 554211 1 


Q ss_pred             ccCCCCCCCCCCeEEEeeeCCCceEEEEcCceee
Q 040662          286 GASCLWVPVEKGSAFANTVHWFGRYSYIRDVCRE  319 (365)
Q Consensus       286 g~~~~~~~~~~n~IYf~~~~~~~~~vy~l~~~~~  319 (365)
                             ...++.||..+ .......+++++|+.
T Consensus       209 -------~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  209 -------SVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             -------ECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             -------eeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence                   14688888887 344457888888753

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=80.67  E-value=49  Score=30.81  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=59.7

Q ss_pred             eeeEEEE--CCEEEEEecCCCcEEE-EEecCCc------eeeeecCC--Cce-eceeEEEEe---CCcEEEEEEEcC---
Q 040662          195 VKNLVCA--DGFLYCSFFSLEAIVA-YNVASQN------LEILPYPP--SIL-FMYKYLTEY---DGSLLIFGKVVD---  256 (365)
Q Consensus       195 ~~~~v~~--~G~lY~~~l~~~g~i~-~d~~~~~------~~~i~~p~--~~~-~~~~~Lve~---~G~L~lV~~~~~---  256 (365)
                      +.+.++.  +|.+|+  ++.+|.|. .|+..+.      |+.+..-.  ..+ -....++..   .|+|++......   
T Consensus       186 f~~~~~~~~~~~~~F--~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs  263 (342)
T PF06433_consen  186 FEHPAYSRDGGRLYF--VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS  263 (342)
T ss_dssp             -S--EEETTTTEEEE--EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred             ccccceECCCCeEEE--EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence            4555655  468988  99999999 9998764      32221000  011 122334443   478876554321   


Q ss_pred             --CCceEEEEeeCCCCCeEEeccCCCeE--EEeccCCCCCCCCCCeEEEeeeCCCceEEEEcCceeee
Q 040662          257 --GSGYRVFTFNRSQMDWFEIESLDDRV--LFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREF  320 (365)
Q Consensus       257 --~~~~~V~~ld~~~~~W~~v~~lg~~~--lfvg~~~~~~~~~~n~IYf~~~~~~~~~vy~l~~~~~~  320 (365)
                        ...-+||.+|.++++=+..-.|+..+  +=|...      ..=.+|-.+.......+|+..+++.-
T Consensus       264 HKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd------~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  264 HKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQD------DKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESS------SS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             ccCCceEEEEEECCCCeEEEEEeCCCccceEEEccC------CCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence              25789999999776433333343322  222211      22245544433334678888888754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=80.19  E-value=3.7  Score=24.76  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=18.5

Q ss_pred             eeeEEEECCEEEEEecCCCcEEE-EEec
Q 040662          195 VKNLVCADGFLYCSFFSLEAIVA-YNVA  221 (365)
Q Consensus       195 ~~~~v~~~G~lY~~~l~~~g~i~-~d~~  221 (365)
                      ...+++.+|++|+  .+.+|.+. ||++
T Consensus        14 ~~~~~v~~g~vyv--~~~dg~l~ald~~   39 (40)
T PF13570_consen   14 WSSPAVAGGRVYV--GTGDGNLYALDAA   39 (40)
T ss_dssp             -S--EECTSEEEE--E-TTSEEEEEETT
T ss_pred             CcCCEEECCEEEE--EcCCCEEEEEeCC
Confidence            4566888999999  99999999 9975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 9  KQKLERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRD-KFPWLMGYNSH 67
          ++     SW  LP E++  I S L +   ++   VCKRW          +   L G N H
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60

Query: 68 S 68
           
Sbjct: 61 P 61

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 5  IKEKKQKLERGSWSDLPLEIINSIVSRL-YVVYQIRFRAVCKRWRAADIQSR 55
          +++   K  + S      ++I  +++ +     +     VC+RW   D ++R
Sbjct: 1  MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.19
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.03
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.91
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.86
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.84
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.79
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.71
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.66
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.66
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.25
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.12
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.06
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.66
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.52
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.37
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	83.72
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	81.18

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.25  E-value=9e-09  Score=93.74  Aligned_cols=247  Identities=13%  Similarity=0.079  Sum_probs=149.8

Q ss_pred             EEEeeCCceEEEcCCCCceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccc---cCCCCccccEEEEcCCCCCeeeCC
Q 040662           61 LMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNV---NSGGRKCSPLFFYSPFADQIINLP  137 (365)
Q Consensus        61 ll~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~---~~~~~~~~~~~l~NP~T~~~~~LP  137 (365)
                      ++++.......|||.+++|...++..   |..+........+|-|++......   .........++.+||.|++|..+|
T Consensus         7 l~~~GG~~~~~yd~~~~~W~~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISEEGAVAYDPAANECYCASLSS---QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEECCC---CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcCCceEEECCCCCeEecCCCCC---CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            44444455678999999998755521   212222223345777776655210   001111235889999999999998


Q ss_pred             CCcccceeEEEEecCCCCCCeEEEEEe----CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC
Q 040662          138 AWREFSIAKATFSATPISPDCVVFVTW----VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE  213 (365)
Q Consensus       138 ~~~~~~~~~~~ls~~p~s~~~~v~v~~----~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~  213 (365)
                      +++..+....+...    ++.+.++..    .+......+..|++.+++|+.++..........++.++|++|+  +.-.
T Consensus        84 ~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~  157 (315)
T 4asc_A           84 PLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV--IGGK  157 (315)
T ss_dssp             CBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE--ECCB
T ss_pred             CCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE--EeCC
Confidence            87433321111111    233333321    1122446789999999999998743222344567789999999  7531


Q ss_pred             -------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCC-ceEEEEeeCCCCCeEEeccCCCeEEE
Q 040662          214 -------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGS-GYRVFTFNRSQMDWFEIESLDDRVLF  284 (365)
Q Consensus       214 -------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~-~~~V~~ld~~~~~W~~v~~lg~~~lf  284 (365)
                             ..+. ||+.+.+|+.++..| ........+..+|+|+++....... .-.+|.+|.++.+|.++..++..-. 
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-  235 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS-  235 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB-
T ss_pred             CCCCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc-
Confidence                   3467 999999999876322 2223334556699999998775332 3468999999999999987652100 


Q ss_pred             eccCCCCCCCCCCeEEEeeeCC--------------CceEEEEcCceeeeec
Q 040662          285 TGASCLWVPVEKGSAFANTVHW--------------FGRYSYIRDVCREFIR  322 (365)
Q Consensus       285 vg~~~~~~~~~~n~IYf~~~~~--------------~~~~vy~l~~~~~~~~  322 (365)
                       +   ......+|.||+.....              ....+||++++++...
T Consensus       236 -~---~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          236 -S---LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             -S---CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             -c---eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence             0   00012467888765311              1135899999998866

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.23  E-value=1.1e-08  Score=93.34  Aligned_cols=246  Identities=16%  Similarity=0.159  Sum_probs=148.8

Q ss_pred             EEEeeCCceEEEcCCCCceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCC---CccccEEEEcCCCCCeeeCC
Q 040662           61 LMGYNSHSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGG---RKCSPLFFYSPFADQIINLP  137 (365)
Q Consensus        61 ll~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~---~~~~~~~l~NP~T~~~~~LP  137 (365)
                      ++++.......|||.+++|...++..   |..+....+...+|-|++.........+   .....++++||.|++|..+|
T Consensus        18 i~~~GG~~~~~yd~~~~~W~~~~~~~---~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   94 (318)
T 2woz_A           18 ILLVNDTAAVAYDPMENECYLTALAE---QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP   94 (318)
T ss_dssp             EEEECSSEEEEEETTTTEEEEEEECT---TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred             hhhccccceEEECCCCCceecccCCc---cCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence            44444445678999999998866521   2222223334557777776652100000   01234889999999999998


Q ss_pred             CCcccce-eEEEEecCCCCCCeEEEEEeC---CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC-
Q 040662          138 AWREFSI-AKATFSATPISPDCVVFVTWV---GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL-  212 (365)
Q Consensus       138 ~~~~~~~-~~~~ls~~p~s~~~~v~v~~~---~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~-  212 (365)
                      +++.... ..++. .    ++.+.++...   +......+..|++.+++|+.++..........++.++|++|+  +.- 
T Consensus        95 ~~p~~r~~~~~~~-~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~  167 (318)
T 2woz_A           95 PLPSARCLFGLGE-V----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC--LGGK  167 (318)
T ss_dssp             CBSSCBCSCEEEE-E----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEE--ECCE
T ss_pred             CCCccccccceEE-E----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEE--EcCC
Confidence            8743322 12211 1    2344443321   122346789999999999998742222234566779999999  753 


Q ss_pred             ------CcEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCCeEEE
Q 040662          213 ------EAIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDDRVLF  284 (365)
Q Consensus       213 ------~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~~~lf  284 (365)
                            ...+. ||+.+.+|+.++..+. .......+..+|+|+++...... ..-.||.+|.++.+|.++..++..-  
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--  244 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQER--  244 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCC--
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCCCC-CcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcc--
Confidence                  12467 9999999998763322 12223345679999999876532 2346889999999999998776310  


Q ss_pred             eccCCCCCCCCCCeEEEeeeC--------------CCceEEEEcCceeeeec
Q 040662          285 TGASCLWVPVEKGSAFANTVH--------------WFGRYSYIRDVCREFIR  322 (365)
Q Consensus       285 vg~~~~~~~~~~n~IYf~~~~--------------~~~~~vy~l~~~~~~~~  322 (365)
                         ........+|.||+....              .....+||+++++|...
T Consensus       245 ---~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          245 ---SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             ---BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             ---cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence               000001246677776421              12246899999998855

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.21  E-value=1.7e-09  Score=98.11  Aligned_cols=245  Identities=10%  Similarity=-0.016  Sum_probs=152.2

Q ss_pred             ceEEEeeC----CceEEEcCCCCceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCee
Q 040662           59 PWLMGYNS----HSCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQII  134 (365)
Q Consensus        59 P~ll~~~~----~~~~~~~~~~~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~  134 (365)
                      ..++++..    ..+..||+.+++|..+.-.    |..+........+|.|++.....    ......+.++||.|++|.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~lyv~GG~~----~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCP----FEKRRDAACVFWDNVVYILGGSQ----LFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCC----SCCCBSCEEEEETTEEEEECCBS----SSBCCEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCC----CcccceeEEEEECCEEEEEeCCC----CCCcceEEEEeCCCCeEE
Confidence            45655543    3568899999999987521    43222222334577777776541    122467999999999999


Q ss_pred             eCCCCcccceeEEEEecCCCCCCeEEEEEeC--CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC
Q 040662          135 NLPAWREFSIAKATFSATPISPDCVVFVTWV--GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL  212 (365)
Q Consensus       135 ~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~--~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~  212 (365)
                      .+|+++.......+...    ++.++++...  +......+..|++.+++|+.++..........++.++|++|+  +.-
T Consensus        84 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG  157 (306)
T 3ii7_A           84 SKLGPPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYV--CGG  157 (306)
T ss_dssp             EEECCSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE--ECC
T ss_pred             ECCCCCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEE--ECC
Confidence            88776433221111111    2333333221  112346789999999999998743222234566788999999  753


Q ss_pred             ----------CcEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCC
Q 040662          213 ----------EAIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDD  280 (365)
Q Consensus       213 ----------~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~  280 (365)
                                ...+. ||+.+++|+.++.. +.......++..+|+|+++...... ..-.||.+|.++.+|.++..++.
T Consensus       158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~  236 (306)
T 3ii7_A          158 SLGNNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW  236 (306)
T ss_dssp             EESCTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSC
T ss_pred             CCCCCCcccccceEEEeCCCCCeEEECCCc-cchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCC
Confidence                      23366 99999999988632 2222334456668999998765422 22458888989999999987763


Q ss_pred             eEEEeccCCCCCCCCCCeEEEeeeC-----CCceEEEEcCceeeeecc
Q 040662          281 RVLFTGASCLWVPVEKGSAFANTVH-----WFGRYSYIRDVCREFIRK  323 (365)
Q Consensus       281 ~~lfvg~~~~~~~~~~n~IYf~~~~-----~~~~~vy~l~~~~~~~~~  323 (365)
                      ..     ........+|.||+....     .....+||++++++....
T Consensus       237 ~r-----~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  279 (306)
T 3ii7_A          237 KG-----VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS  279 (306)
T ss_dssp             CB-----SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEE
T ss_pred             Cc-----cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCC
Confidence            10     000011347888887642     122369999999988653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.19  E-value=4.4e-09  Score=95.01  Aligned_cols=234  Identities=16%  Similarity=0.070  Sum_probs=146.2

Q ss_pred             ceEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCC---eeeCCCCcccc
Q 040662           68 SCYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQ---IINLPAWREFS  143 (365)
Q Consensus        68 ~~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~---~~~LP~~~~~~  143 (365)
                      ....||+.+++|..++ +     |..+........+|-|++.....   .......++++||.|++   |..+|+++...
T Consensus        32 ~~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~~~~~l~v~GG~~---~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r  103 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSI-----TRKRRYVASVSLHDRIYVIGGYD---GRSRLSSVECLDYTADEDGVWYSVAPMNVRR  103 (301)
T ss_dssp             CEEEEETTTTEEEECCCC-----SSCCBSCEEEEETTEEEEECCBC---SSCBCCCEEEEETTCCTTCCCEEECCCSSCC
T ss_pred             EEEEEcCCCCeEEeCCCC-----ChhhccccEEEECCEEEEEcCCC---CCccCceEEEEECCCCCCCeeEECCCCCCCc
Confidence            3478999999999875 3     43222222334577777765542   11124679999999999   99988774332


Q ss_pred             e-eEEEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcE
Q 040662          144 I-AKATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAI  215 (365)
Q Consensus       144 ~-~~~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~  215 (365)
                      . ..++. .    ++.++++... +......++.|++.+++|+.++..........++.++|++|+  +.-      ...
T Consensus       104 ~~~~~~~-~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~  176 (301)
T 2vpj_A          104 GLAGATT-L----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC--LGGYDGLNILNS  176 (301)
T ss_dssp             BSCEEEE-E----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE--ECCBCSSCBCCC
T ss_pred             cceeEEE-E----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE--ECCCCCCcccce
Confidence            2 22221 1    2333333221 111345789999999999998753222334567778999999  752      234


Q ss_pred             EE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCC-ceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCC
Q 040662          216 VA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGS-GYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVP  293 (365)
Q Consensus       216 i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~-~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~  293 (365)
                      +. ||+.+.+|+.++..+. ......++..+|+|+++....... .-.||.+|.++.+|.++..++....  +   ....
T Consensus       177 ~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~---~~~~  250 (301)
T 2vpj_A          177 VEKYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC--Y---VGAT  250 (301)
T ss_dssp             EEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB--S---CEEE
T ss_pred             EEEEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc--c---eeEE
Confidence            66 9999999998763322 123334556789999987654222 3468889989999999987763110  0   0011


Q ss_pred             CCCCeEEEeeeCC-----CceEEEEcCceeeeec
Q 040662          294 VEKGSAFANTVHW-----FGRYSYIRDVCREFIR  322 (365)
Q Consensus       294 ~~~n~IYf~~~~~-----~~~~vy~l~~~~~~~~  322 (365)
                      ..+|.||+.....     ....+||++++++...
T Consensus       251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          251 VLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             EETTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             EECCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence            3577888876321     1236899999988755

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.19  E-value=9e-09  Score=93.07  Aligned_cols=234  Identities=14%  Similarity=0.056  Sum_probs=147.5

Q ss_pred             ceEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce-e
Q 040662           68 SCYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI-A  145 (365)
Q Consensus        68 ~~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~-~  145 (365)
                      ....||+.+++|..+. +     |..+........+|-|++......   ......+.++||.|++|..+|+++.... .
T Consensus        31 ~~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  102 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAEL-----PSRRCRAGMVYMAGLVFAVGGFNG---SLRVRTVDSYDPVKDQWTSVANMRDRRSTL  102 (302)
T ss_dssp             CEEEEETTTTEEEEECCC-----SSCCBSCEEEEETTEEEEESCBCS---SSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             cEEEEcCcCCcEeEcccC-----CcccccceEEEECCEEEEEeCcCC---CccccceEEECCCCCceeeCCCCCccccce
Confidence            3478999999999875 3     443222223344777777765421   1124579999999999999987743322 2


Q ss_pred             EEEEecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC--------CcEE
Q 040662          146 KATFSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL--------EAIV  216 (365)
Q Consensus       146 ~~~ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~--------~g~i  216 (365)
                      .++. .    ++.++++.. .+......++.|++.+++|+.++..........++.++|++|+  +.-        ...+
T Consensus       103 ~~~~-~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~  175 (302)
T 2xn4_A          103 GAAV-L----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYA--VGGYDVASRQCLSTV  175 (302)
T ss_dssp             EEEE-E----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE--ECCEETTTTEECCCE
T ss_pred             EEEE-E----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEE--EeCCCCCCCccccEE
Confidence            2221 1    234444322 2222346789999999999998743222234567788999999  752        1246


Q ss_pred             E-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCC
Q 040662          217 A-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPV  294 (365)
Q Consensus       217 ~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~  294 (365)
                      . ||+.+++|+.++..+.. .....++..+|+|+++...... ..-.||.+|.++.+|.++..++..-.  +   .....
T Consensus       176 ~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~--~---~~~~~  249 (302)
T 2xn4_A          176 ECYNATTNEWTYIAEMSTR-RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR--N---AGVCA  249 (302)
T ss_dssp             EEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB--S---CEEEE
T ss_pred             EEEeCCCCcEEECCCCccc-cccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc--c---CeEEE
Confidence            6 99999999987643321 2333455678999998765422 13468899999999999987763100  0   00113


Q ss_pred             CCCeEEEeeeCC-----CceEEEEcCceeeeec
Q 040662          295 EKGSAFANTVHW-----FGRYSYIRDVCREFIR  322 (365)
Q Consensus       295 ~~n~IYf~~~~~-----~~~~vy~l~~~~~~~~  322 (365)
                      .+|.||+.....     ....+||++++++...
T Consensus       250 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          250 VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence            577888875321     2247999999999865

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.06  E-value=1.3e-08  Score=92.42  Aligned_cols=237  Identities=12%  Similarity=0.064  Sum_probs=144.5

Q ss_pred             ceEEEcCCCCceEEEecCCCCCCCCCCCeEEEccCCeEEEecccccc-CCCCccccEEEEcCCCCCeeeCCCCcccce--
Q 040662           68 SCYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVN-SGGRKCSPLFFYSPFADQIINLPAWREFSI--  144 (365)
Q Consensus        68 ~~~~~~~~~~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~-~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~--  144 (365)
                      ....||+.+++|..+.-.    |..+........+|-|++....... ........+.++||.|++|.++|+++....  
T Consensus        40 ~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  115 (308)
T 1zgk_A           40 YLEAYNPSNGTWLRLADL----QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI  115 (308)
T ss_dssp             CEEEEETTTTEEEECCCC----SSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             eEEEEcCCCCeEeECCCC----CcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc
Confidence            457899999999987521    4322222233447777776543100 000123579999999999999987743322  


Q ss_pred             eEEEEecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEEE
Q 040662          145 AKATFSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIVA  217 (365)
Q Consensus       145 ~~~~ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i~  217 (365)
                      ..+.+      ++.++++.. .+......++.|++.+++|+.++..........++.++|++|+  +.-      ...+.
T Consensus       116 ~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~  187 (308)
T 1zgk_A          116 GVGVI------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA--VGGFDGTNRLNSAE  187 (308)
T ss_dssp             EEEEE------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE--ECCBCSSCBCCCEE
T ss_pred             EEEEE------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEE--EeCCCCCCcCceEE
Confidence            22222      223333211 1111235688999999999998743222334566778999999  753      13467


Q ss_pred             -EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCC
Q 040662          218 -YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVE  295 (365)
Q Consensus       218 -~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~  295 (365)
                       ||+.+++|+.++..+.. ......+..+|+|+++...... ..-.||.+|.++.+|.++..++..-.  +   ......
T Consensus       188 ~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~--~---~~~~~~  261 (308)
T 1zgk_A          188 CYYPERNEWRMITAMNTI-RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS--A---LGITVH  261 (308)
T ss_dssp             EEETTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB--S---CEEEEE
T ss_pred             EEeCCCCeEeeCCCCCCc-cccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCcc--c---eEEEEE
Confidence             99999999987643221 2223345568999998765322 23568899989999999987763100  0   001135


Q ss_pred             CCeEEEeeeC-----CCceEEEEcCceeeeec
Q 040662          296 KGSAFANTVH-----WFGRYSYIRDVCREFIR  322 (365)
Q Consensus       296 ~n~IYf~~~~-----~~~~~vy~l~~~~~~~~  322 (365)
                      +|.||+....     .....+||++++++...
T Consensus       262 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            7788887532     12236999999998854

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.03  E-value=1.5e-10  Score=76.23  Aligned_cols=42  Identities=31%  Similarity=0.544  Sum_probs=36.5

Q ss_pred             cCCCCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           13 ERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        13 ~~~~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      +...|..||+||+..||.+||..+++++++|||+|+.++.++
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~   46 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   46 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Confidence            345799999999999999999999999999999999998764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.92  E-value=8.9e-08  Score=86.83  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=124.8

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~  147 (365)
                      ...||+.+++|..++ +     |..+........+|-|++......   ......+.++||.|++|..+++++.......
T Consensus        92 ~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  163 (308)
T 1zgk_A           92 LDCYNPMTNQWSPCAPM-----SVPRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLVAPMLTRRIGVG  163 (308)
T ss_dssp             EEEEETTTTEEEECCCC-----SSCCBTCEEEEETTEEEEECCEET---TEECCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred             EEEECCCCCeEeECCCC-----CcCccccEEEEECCEEEEEcCCCC---CcccccEEEECCCCCeEeECCCCCccccceE
Confidence            467899999998875 3     432222223344787777755311   1123579999999999999987743332211


Q ss_pred             EEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEEE-EE
Q 040662          148 TFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIVA-YN  219 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i~-~d  219 (365)
                      +...    ++.++++... +......+..|++.+++|+.++..........++.++|++|+  +.-      ...+. ||
T Consensus       164 ~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          164 VAVL----NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA--AGGYDGQDQLNSVERYD  237 (308)
T ss_dssp             EEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE--ECCBCSSSBCCCEEEEE
T ss_pred             EEEE----CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEE--EeCCCCCCccceEEEEe
Confidence            1111    2333333221 111245789999999999998743222234567788999999  763      13467 99


Q ss_pred             ecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCC
Q 040662          220 VASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       220 ~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      +.+++|+.++..+. ......++..+|+|+++...... ..-.||.+|.++++|.++..|+
T Consensus       238 ~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  297 (308)
T 1zgk_A          238 VETETWTFVAPMKH-RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  297 (308)
T ss_dssp             TTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             CCCCcEEECCCCCC-CccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCC
Confidence            99999998763322 12233445568999988764322 2457899999999999998876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.92  E-value=8.7e-08  Score=87.16  Aligned_cols=196  Identities=13%  Similarity=0.137  Sum_probs=123.1

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~  147 (365)
                      ...||+.+++|..++ +     |..+........+|-|++...............+.++||.|++|..+++++.......
T Consensus        69 ~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  143 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPL-----PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT  143 (315)
T ss_dssp             EEEEETTTTEEEECCCB-----SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred             eEEecCCCCeEEECCCC-----CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccccee
Confidence            357899999998764 3     4322122233457777777653110112234679999999999999987743332211


Q ss_pred             EEecCCCCCCeEEEEEeC--CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC---C---cEEE-E
Q 040662          148 TFSATPISPDCVVFVTWV--GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL---E---AIVA-Y  218 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~~--~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~---~---g~i~-~  218 (365)
                      +...    ++.+.++...  .......++.|++.+++|+.++..........++.++|++|+  +.-   .   ..+. |
T Consensus       144 ~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~y  217 (315)
T 4asc_A          144 VLSH----MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIV--AAGVTDTGLTSSAEVY  217 (315)
T ss_dssp             EEEE----TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE--EEEECSSSEEEEEEEE
T ss_pred             EEEE----CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEE--EeccCCCCccceEEEE
Confidence            1111    2333333221  112346789999999999998743222234567788999999  742   1   2466 9


Q ss_pred             EecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcC-----C-----CceEEEEeeCCCCCeEEec
Q 040662          219 NVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVD-----G-----SGYRVFTFNRSQMDWFEIE  276 (365)
Q Consensus       219 d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~-----~-----~~~~V~~ld~~~~~W~~v~  276 (365)
                      |+.+++|+.++..+. ......++..+|+|+++.....     .     ..-.||.+|.++.+|+++.
T Consensus       218 d~~~~~W~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  284 (315)
T 4asc_A          218 SITDNKWAPFEAFPQ-ERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL  284 (315)
T ss_dssp             ETTTTEEEEECCCSS-CCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEECCCCCC-cccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc
Confidence            999999998864332 2233345567899999987632     1     1246999999999999983

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.91  E-value=1.5e-07  Score=85.10  Aligned_cols=197  Identities=13%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~  147 (365)
                      ...||+.+++|..+. +     |..+........+|-|++......  .......+.++||.|++|..+|+++.......
T Consensus        72 ~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  144 (306)
T 3ii7_A           72 MDCYNVVKDSWYSKLGP-----PTPRDSLAACAAEGKIYTSGGSEV--GNSALYLFECYDTRTESWHTKPSMLTQRCSHG  144 (306)
T ss_dssp             EEEEETTTTEEEEEECC-----SSCCBSCEEEEETTEEEEECCBBT--TBSCCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             EEEEeCCCCeEEECCCC-----CccccceeEEEECCEEEEECCCCC--CCcEeeeEEEEeCCCCceEeCCCCcCCcceeE
Confidence            467999999999876 3     433222223345777777765420  11124679999999999999887743322111


Q ss_pred             EEecCCCCCCeEEEEEe-CCCcC----eEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEE
Q 040662          148 TFSATPISPDCVVFVTW-VGIME----ISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIV  216 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~-~~~~~----~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i  216 (365)
                      +...    ++.+.++.. .....    ...++.|++.+++|+.++..........++.++|++|+  +.-      ...+
T Consensus       145 ~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v--~GG~~~~~~~~~~  218 (306)
T 3ii7_A          145 MVEA----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFA--VGGQNGLGGLDNV  218 (306)
T ss_dssp             EEEE----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE--ECCEETTEEBCCE
T ss_pred             EEEE----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEE--EeCCCCCCCCceE
Confidence            1111    223333211 11111    56789999999999999743222345567788999999  753      1346


Q ss_pred             E-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCC
Q 040662          217 A-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       217 ~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      . ||+.+++|+.++..+. .......+..+|+|+++...... ..-.||.+|.++.+|.++..++
T Consensus       219 ~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  282 (306)
T 3ii7_A          219 EYYDIKLNEWKMVSPMPW-KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR  282 (306)
T ss_dssp             EEEETTTTEEEECCCCSC-CBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred             EEeeCCCCcEEECCCCCC-CccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence            6 9999999998763332 12233445568999998865422 3347999999999999998764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.86  E-value=2e-07  Score=83.95  Aligned_cols=197  Identities=14%  Similarity=0.129  Sum_probs=124.3

Q ss_pred             ceEEEcCCCCc---eEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccc
Q 040662           68 SCYLYDPCHKQ---KYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFS  143 (365)
Q Consensus        68 ~~~~~~~~~~~---~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~  143 (365)
                      ....||+.+++   |..+. +     |..+........+|-|++......   ......+.++||.|++|..+|+++...
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~---~~~~~~~~~~d~~~~~W~~~~~~p~~r  150 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPM-----NVRRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSMLGDMQTAR  150 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCC-----SSCCBSCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTEEEEEEECSSCC
T ss_pred             eEEEEECCCCCCCeeEECCCC-----CCCccceeEEEECCEEEEEcccCC---CcccceEEEEcCCCCeEEECCCCCCCc
Confidence            35789999988   98875 3     432222223345788887765421   112357999999999999887663322


Q ss_pred             eeEEEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEE
Q 040662          144 IAKATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIV  216 (365)
Q Consensus       144 ~~~~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i  216 (365)
                      ....+...    ++.++++... +......++.|++.+++|+.++..........++.++|++|+  +.-      ...+
T Consensus       151 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v--~GG~~~~~~~~~v  224 (301)
T 2vpj_A          151 EGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYV--VGGFDGTAHLSSV  224 (301)
T ss_dssp             BSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE--ECCBCSSSBCCCE
T ss_pred             ccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEE--EeCCCCCcccceE
Confidence            21111111    2333333221 111345788999999999998643222234567788999999  753      1356


Q ss_pred             E-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCC
Q 040662          217 A-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       217 ~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      . ||+.+.+|+.++..+.. ......+..+|+|+++...... ..-.||.+|.++.+|.++..|+
T Consensus       225 ~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~  288 (301)
T 2vpj_A          225 EAYNIRTDSWTTVTSMTTP-RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG  288 (301)
T ss_dssp             EEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeCCCCcEEECCCCCCc-ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC
Confidence            7 99999999988643321 1223345568999888764322 2257999999999999998775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.84  E-value=2.9e-07  Score=83.05  Aligned_cols=196  Identities=13%  Similarity=0.097  Sum_probs=122.9

Q ss_pred             eEEEcCCCCceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCccccee-EE
Q 040662           69 CYLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIA-KA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~-~~  147 (365)
                      ...||+.+++|..++-.    |..+........+|-|++.....   .......+.++||.|++|..+++++..... .+
T Consensus        79 ~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  151 (302)
T 2xn4_A           79 VDSYDPVKDQWTSVANM----RDRRSTLGAAVLNGLLYAVGGFD---GSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGV  151 (302)
T ss_dssp             EEEEETTTTEEEEECCC----SSCCBSCEEEEETTEEEEEEEEC---SSCEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             eEEECCCCCceeeCCCC----CccccceEEEEECCEEEEEcCCC---CCccCceEEEEeCCCCeEeecCCCCCcccCceE
Confidence            47899999999988621    43222222334577777775531   111235788999999999998877433221 22


Q ss_pred             EEecCCCCCCeEEEEEeC-CC--cCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEEE-
Q 040662          148 TFSATPISPDCVVFVTWV-GI--MEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIVA-  217 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~~-~~--~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i~-  217 (365)
                      +. .    ++.+.++... ..  .....++.|++.+++|+.++..........++.++|++|+  +.-      ...+. 
T Consensus       152 ~~-~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~  224 (302)
T 2xn4_A          152 GV-V----GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYA--VGGHDGPLVRKSVEV  224 (302)
T ss_dssp             EE-E----TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE--ECCBSSSSBCCCEEE
T ss_pred             EE-E----CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEE--ECCCCCCcccceEEE
Confidence            11 1    2233332111 11  1245688999999999998743222234567788999999  752      13577 


Q ss_pred             EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEec-cCC
Q 040662          218 YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIE-SLD  279 (365)
Q Consensus       218 ~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~-~lg  279 (365)
                      ||+.+.+|+.++..+.. .....++..+|+|+++...... ..-.|+.+|.++.+|.++. .|.
T Consensus       225 yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~  287 (302)
T 2xn4_A          225 YDPTTNAWRQVADMNMC-RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMS  287 (302)
T ss_dssp             EETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCS
T ss_pred             EeCCCCCEeeCCCCCCc-cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccC
Confidence            99999999987643322 1223355668999988765322 2345888888899999986 564

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.79  E-value=4e-07  Score=82.86  Aligned_cols=194  Identities=12%  Similarity=0.125  Sum_probs=120.8

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~  147 (365)
                      ...||+.+++|..++ +     |..+........+|-|++...... ........+.++||.|++|..+++++.......
T Consensus        80 ~~~~d~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  153 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPL-----PSARCLFGLGEVDDKIYVVAGKDL-QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN  153 (318)
T ss_dssp             EEEEETTTTEEEECSCB-----SSCBCSCEEEEETTEEEEEEEEBT-TTCCEEEEEEEEETTTTEEEEECCCSSCEESCE
T ss_pred             EEEEeCCCCcEEECCCC-----CccccccceEEECCEEEEEcCccC-CCCcccceEEEEeCCCCCEeECCCCCCcccccE
Confidence            356899999998874 3     432222223445777777755310 011123578999999999999877643322211


Q ss_pred             EEecCCCCCCeEEEEEe--CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEEE-E
Q 040662          148 TFSATPISPDCVVFVTW--VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIVA-Y  218 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~--~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i~-~  218 (365)
                      +...    ++.+.++..  ........+..|++.+++|+.++..........++.++|++|+  +.-      ...+. |
T Consensus       154 ~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~y  227 (318)
T 2woz_A          154 VISH----NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVI--AGGVTEDGLSASVEAF  227 (318)
T ss_dssp             EEEE----TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE--EEEEETTEEEEEEEEE
T ss_pred             EEEE----CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEE--EcCcCCCCccceEEEE
Confidence            1111    233333221  1111345689999999999998743222234567788999999  752      13466 9


Q ss_pred             EecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcC----------CCceEEEEeeCCCCCeEEe
Q 040662          219 NVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVD----------GSGYRVFTFNRSQMDWFEI  275 (365)
Q Consensus       219 d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~----------~~~~~V~~ld~~~~~W~~v  275 (365)
                      |+.+++|+.++..|.. .....++..+|+|+++.....          ...-.||.+|.++.+|.++
T Consensus       228 d~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          228 DLKTNKWEVMTEFPQE-RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             ETTTCCEEECCCCSSC-CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             ECCCCeEEECCCCCCc-ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            9999999987643321 223345667899998875431          1135699999999999998

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.71  E-value=4.3e-06  Score=77.13  Aligned_cols=237  Identities=11%  Similarity=-0.045  Sum_probs=134.2

Q ss_pred             ceEEEcCCC--CceEEEe-cCCCCCC-CCCCCeEEEccCCeEEEeccccc--cCCCCccccEEEEcCCCCCeeeCCCCc-
Q 040662           68 SCYLYDPCH--KQKYTVF-NSDKNRT-TLLGARPLDSKHGWVLFEGEKNV--NSGGRKCSPLFFYSPFADQIINLPAWR-  140 (365)
Q Consensus        68 ~~~~~~~~~--~~~~~~~-l~~~~~P-~~~~~~~~~s~~G~l~~~~~~~~--~~~~~~~~~~~l~NP~T~~~~~LP~~~-  140 (365)
                      +...||+..  .+|..+. +     | ..+........+|-|++......  .........+.++||.|++|..++++. 
T Consensus        32 ~~~~~d~~~~~~~W~~~~~~-----p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p  106 (357)
T 2uvk_A           32 AWYKLDTQAKDKKWTALAAF-----PGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP  106 (357)
T ss_dssp             CEEEEETTSSSCCEEECCCC-----TTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCS
T ss_pred             eEEEEccccCCCCeeECCCC-----CCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCC
Confidence            457889874  7888775 4     5 22222223345777777655310  000112357999999999999998764 


Q ss_pred             ccceeEEEEecCCCCCCeEEEEEeCCCc-----------------------------------CeEEEEEEecCCCceEE
Q 040662          141 EFSIAKATFSATPISPDCVVFVTWVGIM-----------------------------------EISCISICRPGDTTWTE  185 (365)
Q Consensus       141 ~~~~~~~~ls~~p~s~~~~v~v~~~~~~-----------------------------------~~~~~~~~~~g~~~W~~  185 (365)
                      .......+...    ++.++++......                                   ....+..|++.+++|+.
T Consensus       107 ~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  182 (357)
T 2uvk_A          107 MGMAGHVTFVH----NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSY  182 (357)
T ss_dssp             SCCSSEEEEEE----TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEE
T ss_pred             cccccceEEEE----CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEE
Confidence            22222211112    2344333321100                                   13588999999999999


Q ss_pred             eeeeCCccce-eeEEEECCEEEEEecCC-------CcEEE-EEe--cCCceeeeec-CCCceeceeEEEEeCCcEEEEEE
Q 040662          186 LRFQDNYRYV-KNLVCADGFLYCSFFSL-------EAIVA-YNV--ASQNLEILPY-PPSILFMYKYLTEYDGSLLIFGK  253 (365)
Q Consensus       186 ~~~~~~~~~~-~~~v~~~G~lY~~~l~~-------~g~i~-~d~--~~~~~~~i~~-p~~~~~~~~~Lve~~G~L~lV~~  253 (365)
                      +......... ..++.++|++|+  +.-       ...+. ||+  .+.+|+.++. |.+........+..+|+|+++..
T Consensus       183 ~~~~p~~~~~~~~~~~~~~~iyv--~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG  260 (357)
T 2uvk_A          183 AGESPWYGTAGAAVVNKGDKTWL--INGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGG  260 (357)
T ss_dssp             EEECSSCCCBSCEEEEETTEEEE--ECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECC
T ss_pred             CCCCCCCCcccccEEEECCEEEE--EeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcC
Confidence            8743211223 677888999999  752       22455 776  7778987753 22332233346667999999886


Q ss_pred             EcCC------------------CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeeeCC-Cc-----e
Q 040662          254 VVDG------------------SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHW-FG-----R  309 (365)
Q Consensus       254 ~~~~------------------~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~~~-~~-----~  309 (365)
                      ....                  ....++.+|.++.+|.++..++..-.  + .  ..-..+|.||+..... .+     .
T Consensus       261 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~-~--~~~~~~~~i~v~GG~~~~~~~~~~v  335 (357)
T 2uvk_A          261 AGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRA--Y-G--VSLPWNNSLLIIGGETAGGKAVTDS  335 (357)
T ss_dssp             EECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCB--S-S--EEEEETTEEEEEEEECGGGCEEEEE
T ss_pred             ccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcc--c-c--eeEEeCCEEEEEeeeCCCCCEeeeE
Confidence            5311                  11457888888999999987763100  0 0  0013578888876421 11     1


Q ss_pred             EEEEcCceeee
Q 040662          310 YSYIRDVCREF  320 (365)
Q Consensus       310 ~vy~l~~~~~~  320 (365)
                      .+|+++++++.
T Consensus       336 ~~l~~~~~~~~  346 (357)
T 2uvk_A          336 VLITVKDNKVT  346 (357)
T ss_dssp             EEEEC-CCSCE
T ss_pred             EEEEEcCcEeE
Confidence            35788887765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.66  E-value=3.3e-06  Score=77.90  Aligned_cols=205  Identities=8%  Similarity=0.009  Sum_probs=119.7

Q ss_pred             ccCCeEEEeccccccCCCCccccEEEEcCC--CCCeeeCCCCc-ccce--eEEEEecCCCCCCeEEEEEeC----C--Cc
Q 040662          100 SKHGWVLFEGEKNVNSGGRKCSPLFFYSPF--ADQIINLPAWR-EFSI--AKATFSATPISPDCVVFVTWV----G--IM  168 (365)
Q Consensus       100 s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~--T~~~~~LP~~~-~~~~--~~~~ls~~p~s~~~~v~v~~~----~--~~  168 (365)
                      ..+|-|++.....       ...++++||.  +++|..+|+++ ..+.  ..+.+      ++.+.++...    .  ..
T Consensus        17 ~~~~~iyv~GG~~-------~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~------~~~lyv~GG~~~~~~~~~~   83 (357)
T 2uvk_A           17 IDNDTVYIGLGSA-------GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI------DGNLYVFGGIGKNSEGLTQ   83 (357)
T ss_dssp             EETTEEEEECGGG-------TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE------TTEEEEECCEEECTTSCEE
T ss_pred             EECCEEEEEeCcC-------CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE------CCEEEEEcCCCCCCCccce
Confidence            3478888876542       3579999998  48999998874 2222  22222      2333332111    0  01


Q ss_pred             CeEEEEEEecCCCceEEeeeeC-CccceeeEEEECCEEEEEecCCC----------------------------------
Q 040662          169 EISCISICRPGDTTWTELRFQD-NYRYVKNLVCADGFLYCSFFSLE----------------------------------  213 (365)
Q Consensus       169 ~~~~~~~~~~g~~~W~~~~~~~-~~~~~~~~v~~~G~lY~~~l~~~----------------------------------  213 (365)
                      ....+..|++.+++|+.++... .......++.++|++|+  +.-.                                  
T Consensus        84 ~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           84 VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYV--TGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             ECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEE--EECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             eeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEE--EeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            2356889999999999987532 22234456669999999  7531                                  


Q ss_pred             ------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC--CceEEEEeeC--CCCCeEEeccCCC-e
Q 040662          214 ------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG--SGYRVFTFNR--SQMDWFEIESLDD-R  281 (365)
Q Consensus       214 ------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~--~~~~V~~ld~--~~~~W~~v~~lg~-~  281 (365)
                            ..+. ||+.+.+|+.+...|.......-++..+|+|+++......  ..-.||.+|.  ++.+|.++..+.. +
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~  241 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD  241 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT
T ss_pred             cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc
Confidence                  3567 9999999998764332112224455678999998754321  1234555554  7889999988742 1


Q ss_pred             EEEeccCCCCCCCCCCeEEEeeeCC----------------------CceEEEEcCceeeeecc
Q 040662          282 VLFTGASCLWVPVEKGSAFANTVHW----------------------FGRYSYIRDVCREFIRK  323 (365)
Q Consensus       282 ~lfvg~~~~~~~~~~n~IYf~~~~~----------------------~~~~vy~l~~~~~~~~~  323 (365)
                      ..+ +   ......+|.||+.....                      ....+|+++++++....
T Consensus       242 ~~~-~---~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~  301 (357)
T 2uvk_A          242 GVA-G---GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG  301 (357)
T ss_dssp             CCB-S---CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE
T ss_pred             ccc-c---ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC
Confidence            000 0   00123577888875310                      12359999999888653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.66  E-value=1.1e-08  Score=91.33  Aligned_cols=43  Identities=19%  Similarity=0.321  Sum_probs=39.2

Q ss_pred             ccCCCCCCChHHHHHHHHhcCChhhhh-hhhhcchhhHHhhccC
Q 040662           12 LERGSWSDLPLEIINSIVSRLYVVYQI-RFRAVCKRWRAADIQS   54 (365)
Q Consensus        12 ~~~~~w~~LP~Dll~~Il~rLp~~~l~-r~r~VCk~Wrs~~~~~   54 (365)
                      |+......||+|||.+||.|||..+|+ |+|+|||+||+++.++
T Consensus        46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~   89 (297)
T 2e31_A           46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA   89 (297)
T ss_dssp             -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH
T ss_pred             ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh
Confidence            445678899999999999999999999 9999999999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.34  E-value=0.0015  Score=61.62  Aligned_cols=40  Identities=23%  Similarity=0.256  Sum_probs=36.6

Q ss_pred             CCCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           15 GSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        15 ~~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      ...+.||+||+..||..|+..+++++..|||+|+.++.+.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~   56 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN   56 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch
Confidence            3468899999999999999999999999999999998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.25  E-value=4.2e-05  Score=77.20  Aligned_cols=198  Identities=8%  Similarity=-0.008  Sum_probs=116.9

Q ss_pred             eEEEcCCCCceEEEecCC--CCCCCCCCCeEEEcc--CCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce
Q 040662           69 CYLYDPCHKQKYTVFNSD--KNRTTLLGARPLDSK--HGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI  144 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~l~~--~~~P~~~~~~~~~s~--~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~  144 (365)
                      ...||+.+++|..+.+..  ...|..+........  +|-|++..+...  .+.....+.++||.|++|..+++++....
T Consensus       414 v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~--~~~~~~dv~~yd~~t~~W~~~~~~p~~R~  491 (695)
T 2zwa_A          414 ILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKA--PHQGLSDNWIFDMKTREWSMIKSLSHTRF  491 (695)
T ss_dssp             EEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSS--TTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred             EEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCC--CCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence            467899999999887210  001332212223334  788887765421  11124579999999999999987743333


Q ss_pred             -eEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCc---cceeeEEEEC---CEEEEEecCCC----
Q 040662          145 -AKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNY---RYVKNLVCAD---GFLYCSFFSLE----  213 (365)
Q Consensus       145 -~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~---~~~~~~v~~~---G~lY~~~l~~~----  213 (365)
                       ..++...    ++.++++..... .. .+++|++.++.|+.+.....+   .....++.++   |++|+  +.-.    
T Consensus       492 ~h~~~~~~----~~~iyv~GG~~~-~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv--~GG~~~~~  563 (695)
T 2zwa_A          492 RHSACSLP----DGNVLILGGVTE-GP-AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII--LGGGFMDQ  563 (695)
T ss_dssp             SCEEEECT----TSCEEEECCBCS-SC-SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE--ECCBCTTS
T ss_pred             cceEEEEc----CCEEEEECCCCC-CC-CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE--ECCcCCCC
Confidence             2222211    233333322111 12 789999999999998742111   1233445555   89999  7531    


Q ss_pred             ----cEEE-EEecCCc------eeeeecCCCceeceeEEEEeC-CcEEEEEEEcCC----CceEEEEeeCCCCCeEEec
Q 040662          214 ----AIVA-YNVASQN------LEILPYPPSILFMYKYLTEYD-GSLLIFGKVVDG----SGYRVFTFNRSQMDWFEIE  276 (365)
Q Consensus       214 ----g~i~-~d~~~~~------~~~i~~p~~~~~~~~~Lve~~-G~L~lV~~~~~~----~~~~V~~ld~~~~~W~~v~  276 (365)
                          ..+. ||+.+++      |+.+...|+........+..+ |+|++++.....    ..-.|+.+|..+.+|..+.
T Consensus       564 ~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          564 TTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP  642 (695)
T ss_dssp             SCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred             CeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence                3577 9999988      777654222212223344556 999998765321    2456888898999999653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.12  E-value=0.00042  Score=65.34  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=34.7

Q ss_pred             CCChHH----HHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           18 SDLPLE----IINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        18 ~~LP~D----ll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      +.||+|    |+..||..|+..+|+++..|||+|+.++.++
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~   52 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG   52 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh
Confidence            569999    9999999999999999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.06  E-value=0.0023  Score=60.49  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=34.9

Q ss_pred             CCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhcc
Q 040662           17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQ   53 (365)
Q Consensus        17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~   53 (365)
                      .+.||+||+..||+.|+.++|+++..|||.|+.++.+
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            5679999999999999999999999999999998876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.97  E-value=0.00019  Score=72.51  Aligned_cols=207  Identities=11%  Similarity=-0.044  Sum_probs=119.9

Q ss_pred             cCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCC-C-----Ccccc--eeEEEEecCCCCCCeEEEEEeCCC-c-Ce
Q 040662          101 KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLP-A-----WREFS--IAKATFSATPISPDCVVFVTWVGI-M-EI  170 (365)
Q Consensus       101 ~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP-~-----~~~~~--~~~~~ls~~p~s~~~~v~v~~~~~-~-~~  170 (365)
                      .+|-|++..+...    .....+.++||.|++|..++ +     ++..+  ...+.++.    ++.++++..... . ..
T Consensus       396 ~~~~iyv~GG~~~----~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~----~~~lyv~GG~~~~~~~~  467 (695)
T 2zwa_A          396 AGNDVFYMGGSNP----YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR----NNQLLLIGGRKAPHQGL  467 (695)
T ss_dssp             CSSCEEEECCBSS----SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT----TTEEEEECCBSSTTCBC
T ss_pred             ECCEEEEECCCCC----CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc----CCEEEEEcCCCCCCCcc
Confidence            5677777665421    22467999999999998877 4     21111  12222211    233333322111 1 24


Q ss_pred             EEEEEEecCCCceEEeeeeCCccceeeEEEE-CCEEEEEecCCC---cEEE-EEecCCceeeeec----CCCceeceeEE
Q 040662          171 SCISICRPGDTTWTELRFQDNYRYVKNLVCA-DGFLYCSFFSLE---AIVA-YNVASQNLEILPY----PPSILFMYKYL  241 (365)
Q Consensus       171 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~-~G~lY~~~l~~~---g~i~-~d~~~~~~~~i~~----p~~~~~~~~~L  241 (365)
                      ..+.+|++.+++|+.++..........++.+ +|++|+  +.-.   +.+. ||+.+.+|+.++.    |.+........
T Consensus       468 ~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv--~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v  545 (695)
T 2zwa_A          468 SDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLI--LGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE  545 (695)
T ss_dssp             CCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEE--ECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEE--ECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE
Confidence            5688999999999998743222234455554 999999  7532   2567 9999999998763    22322222222


Q ss_pred             EEeC-CcEEEEEEEcCC---CceEEEEeeCCCCC------eEEeccCCCeEEEeccCCCCCCCCC-CeEEEeeeC-----
Q 040662          242 TEYD-GSLLIFGKVVDG---SGYRVFTFNRSQMD------WFEIESLDDRVLFTGASCLWVPVEK-GSAFANTVH-----  305 (365)
Q Consensus       242 ve~~-G~L~lV~~~~~~---~~~~V~~ld~~~~~------W~~v~~lg~~~lfvg~~~~~~~~~~-n~IYf~~~~-----  305 (365)
                      +..+ |+|++++.....   ..-.||.+|..+..      |.++..++.    .++........+ |.||+....     
T Consensus       546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~----~~R~~~~~~~~~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL----FQRYGSQIKYITPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG----GCCBSCEEEEEETTEEEEECCBCSSCC
T ss_pred             EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC----CCcccceEEEeCCCEEEEECCccCCCC
Confidence            2333 889988765321   23468888887777      888876421    010000011234 888887531     


Q ss_pred             ---CCceEEEEcCceeeee
Q 040662          306 ---WFGRYSYIRDVCREFI  321 (365)
Q Consensus       306 ---~~~~~vy~l~~~~~~~  321 (365)
                         .....+||+++++|..
T Consensus       622 ~~~~~~v~~yd~~t~~W~~  640 (695)
T 2zwa_A          622 FDRTNSIISLDPLSETLTS  640 (695)
T ss_dssp             CCTTTSEEEEETTTTEEEE
T ss_pred             CCCCCeEEEEECCCCeEEE
Confidence               1224699999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.75  E-value=1.3e-05  Score=73.05  Aligned_cols=43  Identities=30%  Similarity=0.546  Sum_probs=37.8

Q ss_pred             ccCCCCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           12 LERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        12 ~~~~~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      .+...|++||+|++..|+.+|+..++++++.|||+|+.++.++
T Consensus         4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~   46 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   46 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS
T ss_pred             cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence            3467899999999999999999999999999999999998654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.66  E-value=0.00022  Score=71.51  Aligned_cols=231  Identities=14%  Similarity=0.076  Sum_probs=126.5

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeE---EEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARP---LDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI  144 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~---~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~  144 (365)
                      ...||+.+++|..+. +     |..+...+   ....+|-|++.....       ...+.++||.|++|.++|+++.-+.
T Consensus       221 ~~~yd~~t~~w~~~~~~-----~~~~~~~~~~~~~~~~g~lyv~GG~~-------~~~v~~yd~~t~~W~~~~~~~~~R~  288 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVT-----VTKHDMFCPGISMDGNGQIVVTGGND-------AKKTSLYDSSSDSWIPGPDMQVARG  288 (656)
T ss_dssp             EEEECTTTCCBCCCEEE-----ECSCCCSSCEEEECTTSCEEEECSSS-------TTCEEEEEGGGTEEEECCCCSSCCS
T ss_pred             EEEEeCCCCcEEeCccc-----CCCCCCccccccCCCCCCEEEeCCCC-------CCceEEecCcCCceeECCCCCcccc
Confidence            367899998887654 3     32222222   223578888887642       2479999999999999988743332


Q ss_pred             -eEEEEecCCCCCCeEEEEEe--CCCcCeEEEEEEecCCCceEEeee----eCCccceeeEEEECCEEEEEecC------
Q 040662          145 -AKATFSATPISPDCVVFVTW--VGIMEISCISICRPGDTTWTELRF----QDNYRYVKNLVCADGFLYCSFFS------  211 (365)
Q Consensus       145 -~~~~ls~~p~s~~~~v~v~~--~~~~~~~~~~~~~~g~~~W~~~~~----~~~~~~~~~~v~~~G~lY~~~l~------  211 (365)
                       ..++..  +  +..++++..  .+......+++|++.+++|+.++.    |........++..++++|+  +.      
T Consensus       289 ~~s~~~~--~--dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv--~Gg~~g~~  362 (656)
T 1k3i_A          289 YQSSATM--S--DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL--FGWKKGSV  362 (656)
T ss_dssp             SCEEEEC--T--TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCE--EECGGGCE
T ss_pred             ccceEEe--c--CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEE--EECCCCcE
Confidence             222221  1  123333322  111234578999999999999842    1000111122234566665  43      


Q ss_pred             ----CCcEEE-EEecCCceeeeecCCCc--------eeceeEEE-EeCCcEEEEEEEcC--C-----CceEEEEeeCCCC
Q 040662          212 ----LEAIVA-YNVASQNLEILPYPPSI--------LFMYKYLT-EYDGSLLIFGKVVD--G-----SGYRVFTFNRSQM  270 (365)
Q Consensus       212 ----~~g~i~-~d~~~~~~~~i~~p~~~--------~~~~~~Lv-e~~G~L~lV~~~~~--~-----~~~~V~~ld~~~~  270 (365)
                          ....+. ||+..++|.....+++.        ......+. ..+|+|+++.....  .     ....|+..|..+.
T Consensus       363 ~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~  442 (656)
T 1k3i_A          363 FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS  442 (656)
T ss_dssp             EECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC
T ss_pred             EEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC
Confidence                234567 99988877532211111        11111121 24789888875421  0     1125777888889


Q ss_pred             CeEEec--cCCC-eEEEeccCCCCCCCCCCeEEEeeeCC-----------CceEEEEcCceeeeec
Q 040662          271 DWFEIE--SLDD-RVLFTGASCLWVPVEKGSAFANTVHW-----------FGRYSYIRDVCREFIR  322 (365)
Q Consensus       271 ~W~~v~--~lg~-~~lfvg~~~~~~~~~~n~IYf~~~~~-----------~~~~vy~l~~~~~~~~  322 (365)
                      .|.++.  .|+. +... +    ..-+-++.||+.....           ....+||.+++++...
T Consensus       443 ~W~~~~~~~mp~~R~~~-~----~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~  503 (656)
T 1k3i_A          443 PNTVFASNGLYFARTFH-T----SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ  503 (656)
T ss_dssp             CEEEECTTCCSSCCBSC-E----EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred             CeeEEccCCCCCCcccC-C----eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence            999986  5542 1100 0    0012366677665311           1236899988887753

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.52  E-value=1.8e-05  Score=69.83  Aligned_cols=39  Identities=15%  Similarity=0.213  Sum_probs=36.8

Q ss_pred             CCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           16 SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        16 ~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      .+..||.||+..||+.|+.+|++++.+|||.||.++.++
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~   42 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP   42 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Confidence            356899999999999999999999999999999999987

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.45  E-value=0.00073  Score=67.62  Aligned_cols=190  Identities=13%  Similarity=0.059  Sum_probs=104.3

Q ss_pred             EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccC-C--CCccccEEEEcCCCCCeeeCCCCcccc--
Q 040662           70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNS-G--GRKCSPLFFYSPFADQIINLPAWREFS--  143 (365)
Q Consensus        70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~-~--~~~~~~~~l~NP~T~~~~~LP~~~~~~--  143 (365)
                      ..|||..++|..+. +     |.......+...+|-|++........ .  ......+.++||.|++|.++++++...  
T Consensus       169 ~~~dp~~~~W~~~~~~-----P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~  243 (656)
T 1k3i_A          169 TAPQPGLGRWGPTIDL-----PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM  243 (656)
T ss_dssp             CCCCTTSCEEEEEEEC-----SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC
T ss_pred             ccCCCCCCeeeeeccC-----CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC
Confidence            45788888998754 5     65322222222277777765431100 0  001236889999999999887652211  


Q ss_pred             ee-EEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEE-CCEEEEEecCC--C-----c
Q 040662          144 IA-KATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCA-DGFLYCSFFSL--E-----A  214 (365)
Q Consensus       144 ~~-~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~-~G~lY~~~l~~--~-----g  214 (365)
                      +. .+++..    +..++++....   ...+.+|++.++.|+.++.....+....++.+ +|++|+  +.-  .     .
T Consensus       244 ~~~~~~~~~----~g~lyv~GG~~---~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv--~GG~~~~~~~~~  314 (656)
T 1k3i_A          244 FCPGISMDG----NGQIVVTGGND---AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT--IGGSWSGGVFEK  314 (656)
T ss_dssp             SSCEEEECT----TSCEEEECSSS---TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE--ECCCCCSSSCCC
T ss_pred             ccccccCCC----CCCEEEeCCCC---CCceEEecCcCCceeECCCCCccccccceEEecCCeEEE--EeCcccCCcccc
Confidence            11 222221    22333332211   12689999999999998743222234556677 999999  764  1     2


Q ss_pred             EEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcC-----CCceEEEEeeCCCCCeEE
Q 040662          215 IVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVD-----GSGYRVFTFNRSQMDWFE  274 (365)
Q Consensus       215 ~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~-----~~~~~V~~ld~~~~~W~~  274 (365)
                      .+. ||+.+++|+.++.    |.+.... ..++..+++++++.....     ...-.|+.+|.++..|.+
T Consensus       315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee
Confidence            466 9999999998742    2221111 011112455554442210     123367777777778765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.36  E-value=6.8e-05  Score=73.87  Aligned_cols=40  Identities=18%  Similarity=0.347  Sum_probs=29.8

Q ss_pred             ccCCCCCCChHHHHHHHHhcCC-hhhhhhhhhcchhhHHhh
Q 040662           12 LERGSWSDLPLEIINSIVSRLY-VVYQIRFRAVCKRWRAAD   51 (365)
Q Consensus        12 ~~~~~w~~LP~Dll~~Il~rLp-~~~l~r~r~VCk~Wrs~~   51 (365)
                      |+...|++||+|++..|+.+|| .+++.+++.|||+|+.+.
T Consensus         1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~   41 (594)
T 2p1m_B            1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE   41 (594)
T ss_dssp             ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH
T ss_pred             CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            4556799999999999999999 899999999999999883

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.37  E-value=0.0012  Score=64.77  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CCChHHHHHHHHhcC-ChhhhhhhhhcchhhHHhhc
Q 040662           18 SDLPLEIINSIVSRL-YVVYQIRFRAVCKRWRAADI   52 (365)
Q Consensus        18 ~~LP~Dll~~Il~rL-p~~~l~r~r~VCk~Wrs~~~   52 (365)
                      ++||+|++..|+.+| +.+++.+++.|||+|+.+..
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence            589999999999999 79999999999999998843

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=83.72  E-value=22  Score=31.09  Aligned_cols=94  Identities=13%  Similarity=0.021  Sum_probs=51.3

Q ss_pred             EEEEEEecCCCceEEeeeeCCccceeeEEEE-CCEEEEEecCC---CcEEE-EEecCCceeeeecCCCceeceeEEEEe-
Q 040662          171 SCISICRPGDTTWTELRFQDNYRYVKNLVCA-DGFLYCSFFSL---EAIVA-YNVASQNLEILPYPPSILFMYKYLTEY-  244 (365)
Q Consensus       171 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~-~G~lY~~~l~~---~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~-  244 (365)
                      ..+..++..++.++.+...........+++. +|++|+  .+.   .+.|. +|+...+.+.+............+.-+ 
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~--~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp   95 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYS--VDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE   95 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEE--EEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEE--EEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC
Confidence            3344455666777665432111223345555 788988  765   36777 999776665544211111122234433 


Q ss_pred             CCcEEEEEEEcCCCceEEEEeeC
Q 040662          245 DGSLLIFGKVVDGSGYRVFTFNR  267 (365)
Q Consensus       245 ~G~L~lV~~~~~~~~~~V~~ld~  267 (365)
                      +|+.+++.... ...+.||.++.
T Consensus        96 dg~~l~~~~~~-~~~v~v~~~~~  117 (347)
T 3hfq_A           96 ARQLVYSANYH-KGTAEVMKIAA  117 (347)
T ss_dssp             TTTEEEEEETT-TTEEEEEEECT
T ss_pred             CCCEEEEEeCC-CCEEEEEEeCC
Confidence            68766655432 45688898864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=81.18  E-value=23  Score=29.52  Aligned_cols=143  Identities=6%  Similarity=-0.017  Sum_probs=73.5

Q ss_pred             cccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCC-CceEEeeeeCCccceeeE
Q 040662          120 CSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGD-TTWTELRFQDNYRYVKNL  198 (365)
Q Consensus       120 ~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~-~~W~~~~~~~~~~~~~~~  198 (365)
                      ...++++|+.+++...+... .-....+.+  .|. +.++++. ..     ..+.+++..+ +....+...........+
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~-~~~v~~~~~--spd-g~~l~~~-~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~   90 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQT-PELFEAPNW--SPD-GKYLLLN-SE-----GLLYRLSLAGDPSPEKVDTGFATICNNDH   90 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEE-SSCCEEEEE--CTT-SSEEEEE-ET-----TEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred             ceeEEEEeCCCCceeeeccC-CcceEeeEE--CCC-CCEEEEE-cC-----CeEEEEeCCCCCCceEeccccccccccce
Confidence            46899999999987655433 112333444  443 3444442 22     3677888776 665544322111123344


Q ss_pred             EEE-CCEEEEEecCC----CcEEE-EEecCCceeeeecCCCceeceeEEEEe-CCcEEEEEEEcCCCceEEEEeeCCCCC
Q 040662          199 VCA-DGFLYCSFFSL----EAIVA-YNVASQNLEILPYPPSILFMYKYLTEY-DGSLLIFGKVVDGSGYRVFTFNRSQMD  271 (365)
Q Consensus       199 v~~-~G~lY~~~l~~----~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~-~G~L~lV~~~~~~~~~~V~~ld~~~~~  271 (365)
                      .+. +|+..+ +...    ...|. +|+.+.....+.....    ...+.-+ +|+.+++.... ...++||.++..+..
T Consensus        91 ~~spdg~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~-~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           91 GISPDGALYA-ISDKVEFGKSAIYLLPSTGGTPRLMTKNLP----SYWHGWSPDGKSFTYCGIR-DQVFDIYSMDIDSGV  164 (297)
T ss_dssp             EECTTSSEEE-EEECTTTSSCEEEEEETTCCCCEECCSSSS----EEEEEECTTSSEEEEEEEE-TTEEEEEEEETTTCC
T ss_pred             EECCCCCEEE-EEEeCCCCcceEEEEECCCCceEEeecCCC----ccceEECCCCCEEEEEECC-CCceEEEEEECCCCc
Confidence            444 554332 0331    34566 7776554333322211    1112222 57766644433 356899999877666


Q ss_pred             eEEeccC
Q 040662          272 WFEIESL  278 (365)
Q Consensus       272 W~~v~~l  278 (365)
                      ..++...
T Consensus       165 ~~~~~~~  171 (297)
T 2ojh_A          165 ETRLTHG  171 (297)
T ss_dssp             EEECCCS
T ss_pred             ceEcccC
Confidence            6555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.004

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAA 50
          W  LP E++  I S L +   ++   VCKRW   
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 12 LERGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQSRDKFPW 60
          L+R   + LP EI   I + L     I    V + W    I  +    W
Sbjct: 1  LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWN--KIIRKSTSLW 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.3
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.29
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.24
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.14
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.76
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.23
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.68

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.8e-12  Score=75.76  Aligned_cols=38  Identities=32%  Similarity=0.623  Sum_probs=36.0

Q ss_pred             CCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      |..||+||+..||++||.+|++|++.|||+|+.++.++
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~   38 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   38 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            78999999999999999999999999999999998764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.5e-07  Score=68.86  Aligned_cols=38  Identities=24%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             CCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      -+.||+||+..||+.|+..|++++.+|||+|+.++.++
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~   56 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN   56 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCH
Confidence            46799999999999999999999999999999998876

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.5e-05  Score=66.15  Aligned_cols=235  Identities=13%  Similarity=0.065  Sum_probs=136.0

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCC-CCeEEEccCCeEEEecccccc-CCCCccccEEEEcCCCCCeeeCCCCcccce-
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLL-GARPLDSKHGWVLFEGEKNVN-SGGRKCSPLFFYSPFADQIINLPAWREFSI-  144 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~-~~~~~~s~~G~l~~~~~~~~~-~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~-  144 (365)
                      ...||+.+++|..+. +     |..+ ++. ..+.+|-|++....... ........+.++||.|..|.++|+++..+. 
T Consensus        21 ~~~yd~~t~~W~~~~~~-----p~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~   94 (288)
T d1zgka1          21 LEAYNPSNGTWLRLADL-----QVPRSGLA-GCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR   94 (288)
T ss_dssp             EEEEETTTTEEEECCCC-----SSCCBSCE-EEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT
T ss_pred             EEEEECCCCeEEECCCC-----CCccceeE-EEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecc
Confidence            468999999999875 4     4422 233 22336666665442110 001123578999999999999998743222 


Q ss_pred             eEEEEecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEEE
Q 040662          145 AKATFSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIVA  217 (365)
Q Consensus       145 ~~~~ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i~  217 (365)
                      ..++..     ++.+.++.. .+.......+.++..+..|...+...........+..++++|.  +.-      ...+.
T Consensus        95 ~~~~~~-----~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~GG~~~~~~~~~~~  167 (288)
T d1zgka1          95 IGVGVI-----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA--VGGFDGTNRLNSAE  167 (288)
T ss_dssp             CEEEEE-----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE--ECCBCSSCBCCCEE
T ss_pred             eecccc-----ceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceE--ecCcccccccceEE
Confidence            222111     123332211 1111234567889999999887754322334556778888887  542      13466


Q ss_pred             -EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCC
Q 040662          218 -YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVE  295 (365)
Q Consensus       218 -~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~  295 (365)
                       ||+..++|.....++... ...-....+|.+++....... .....+..|..+.+|..+..+...-.  +   ...-..
T Consensus       168 ~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~--~---~~~~~~  241 (288)
T d1zgka1         168 CYYPERNEWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRS--A---LGITVH  241 (288)
T ss_dssp             EEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCB--S---CEEEEE
T ss_pred             Eeecccccccccccccccc-ccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCccc--c---eEEEEE
Confidence             999888887665433221 222334457887776544322 23467888888899999876642100  0   000124


Q ss_pred             CCeEEEeeeC-----CCceEEEEcCceeeeec
Q 040662          296 KGSAFANTVH-----WFGRYSYIRDVCREFIR  322 (365)
Q Consensus       296 ~n~IYf~~~~-----~~~~~vy~l~~~~~~~~  322 (365)
                      +|.||+....     .....+||++++++...
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~  273 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  273 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCEEEEC
Confidence            6788876421     11236999999998865

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=2.1e-07  Score=67.85  Aligned_cols=36  Identities=25%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             CCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhcc
Q 040662           18 SDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQ   53 (365)
Q Consensus        18 ~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~   53 (365)
                      +.||+||+..||+.|+..|+++++.|||+|+.++.+
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            579999999999999999999999999999998864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=9.1e-05  Score=63.44  Aligned_cols=196  Identities=13%  Similarity=0.099  Sum_probs=118.3

Q ss_pred             eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662           69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA  147 (365)
Q Consensus        69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~  147 (365)
                      ...||+...+|..+. +     |..+...-....+|-+++.....   ...........++.|..|...|..........
T Consensus        72 ~~~yd~~~~~w~~~~~~-----p~~r~~~~~~~~~~~i~~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  143 (288)
T d1zgka1          72 LDCYNPMTNQWSPCAPM-----SVPRNRIGVGVIDGHIYAVGGSH---GCIHHNSVERYEPERDEWHLVAPMLTRRIGVG  143 (288)
T ss_dssp             EEEEETTTTEEEECCCC-----SSCCBTCEEEEETTEEEEECCEE---TTEECCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred             hhhcccccccccccccc-----cceecceeccccceeeEEeccee---cccccceeeeeccccCccccccccccccccce
Confidence            367899999998875 3     33221111223366666654331   11123467789999999988877643322211


Q ss_pred             EEecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC------CcEEE-EE
Q 040662          148 TFSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL------EAIVA-YN  219 (365)
Q Consensus       148 ~ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~------~g~i~-~d  219 (365)
                      +...    .+.+.++.. ........+..|++..+.|...............+..++++|.  +.-      ..... +|
T Consensus       144 ~~~~----~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i--~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         144 VAVL----NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYA--AGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             EEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE--ECCBCSSSBCCCEEEEE
T ss_pred             eeee----eecceEecCcccccccceEEEeeccccccccccccccccccccccceeeeEEE--ecCccccccccceeeee
Confidence            1111    122222211 1112345678999999999988754333345567788999988  642      12355 89


Q ss_pred             ecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCC
Q 040662          220 VASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLD  279 (365)
Q Consensus       220 ~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg  279 (365)
                      +...+|..++..+. ......++..+|+|+++...... ..-.||.+|.++++|.++..|+
T Consensus       218 ~~~~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  277 (288)
T d1zgka1         218 VETETWTFVAPMKH-RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMT  277 (288)
T ss_dssp             TTTTEEEECCCCSS-CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS
T ss_pred             ecceeeecccCccC-cccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCC
Confidence            98889987763332 12333456679999998754322 2235888898999999999886

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5e-06  Score=62.23  Aligned_cols=37  Identities=27%  Similarity=0.376  Sum_probs=33.8

Q ss_pred             CCCh----HHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662           18 SDLP----LEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS   54 (365)
Q Consensus        18 ~~LP----~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~   54 (365)
                      +.||    +||+..||+.|+..|++++..|||+|+.++.++
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~   52 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG   52 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCH
Confidence            3567    599999999999999999999999999999876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.23  E-value=0.0016  Score=57.84  Aligned_cols=147  Identities=13%  Similarity=-0.002  Sum_probs=86.2

Q ss_pred             cCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeC-------CCcCeEEEEEEecCCCceEEeeee-CCc--ccee
Q 040662          127 SPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWV-------GIMEISCISICRPGDTTWTELRFQ-DNY--RYVK  196 (365)
Q Consensus       127 NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~-------~~~~~~~~~~~~~g~~~W~~~~~~-~~~--~~~~  196 (365)
                      .|.+++|-.+++++......+++.   .++ .++++...       .......+++|++.+++|+..... ...  ....
T Consensus         5 ~p~~g~W~~~~~~p~~~~~~a~~~---~~g-kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~   80 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPAAAAIEP---TSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG   80 (387)
T ss_dssp             CTTSCEEEEEEECSSCCSEEEEET---TTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred             CCCCCccCCcCCCCccccEEEEEe---eCC-EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeE
Confidence            378888876665533333333332   222 33333221       011345678999999999876532 111  1223


Q ss_pred             eEEEECCEEEEEecCCC--cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC--CceEEEEeeCCCCC
Q 040662          197 NLVCADGFLYCSFFSLE--AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG--SGYRVFTFNRSQMD  271 (365)
Q Consensus       197 ~~v~~~G~lY~~~l~~~--g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~--~~~~V~~ld~~~~~  271 (365)
                      ..+..+|++|+  ....  ..+. ||+.+.+|+.++..+.........+..+|+++++......  ..-.++..|..+.+
T Consensus        81 ~~~~~~g~i~v--~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          81 ISMDGNGQIVV--TGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEECTTSCEEE--ECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEecCCcEEE--eecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            44556999998  7642  3566 9999999987664333222222223347999888754321  22346777888899


Q ss_pred             eEEeccCC
Q 040662          272 WFEIESLD  279 (365)
Q Consensus       272 W~~v~~lg  279 (365)
                      |..+..+.
T Consensus       159 W~~~~~~~  166 (387)
T d1k3ia3         159 WTSLPNAK  166 (387)
T ss_dssp             EEEETTSC
T ss_pred             eeecCCCc
Confidence            99987654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.68  E-value=0.0063  Score=53.69  Aligned_cols=184  Identities=13%  Similarity=0.042  Sum_probs=98.6

Q ss_pred             CCCCceEEE-ecCCCCCCCCCCCeEEEccCCeEEEecccccc---CCCCccccEEEEcCCCCCeeeCCCCcccc--e-eE
Q 040662           74 PCHKQKYTV-FNSDKNRTTLLGARPLDSKHGWVLFEGEKNVN---SGGRKCSPLFFYSPFADQIINLPAWREFS--I-AK  146 (365)
Q Consensus        74 ~~~~~~~~~-~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~---~~~~~~~~~~l~NP~T~~~~~LP~~~~~~--~-~~  146 (365)
                      |..++|-.. ++     |..+.+..+...+|-|++.......   ..........++||.|++|.++|++....  + ..
T Consensus         6 p~~g~W~~~~~~-----p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~   80 (387)
T d1k3ia3           6 PGLGRWGPTIDL-----PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG   80 (387)
T ss_dssp             TTSCEEEEEEEC-----SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred             CCCCccCCcCCC-----CccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeE
Confidence            445666643 35     5443333344567888776442100   01111234779999999998876652111  1 12


Q ss_pred             EEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccc-eeeEEEECCEEEEEecCCC-------cEEE-
Q 040662          147 ATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRY-VKNLVCADGFLYCSFFSLE-------AIVA-  217 (365)
Q Consensus       147 ~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~-~~~~v~~~G~lY~~~l~~~-------g~i~-  217 (365)
                      +++.  +  ...+++ ....  ....+.+|++.++.|+..+....... ...++..||++|+  +.-.       ..+. 
T Consensus        81 ~~~~--~--~g~i~v-~Gg~--~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v--~GG~~~~~~~~~~v~~  151 (387)
T d1k3ia3          81 ISMD--G--NGQIVV-TGGN--DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT--IGGSWSGGVFEKNGEV  151 (387)
T ss_dssp             EEEC--T--TSCEEE-ECSS--STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE--ECCCCCSSSCCCCEEE
T ss_pred             EEEe--c--CCcEEE-eecC--CCcceeEecCccCcccccccccccccccceeeecCCceee--eccccccccccceeee
Confidence            2222  1  123333 2221  22467899999999998875322222 3334445899998  7531       2466 


Q ss_pred             EEecCCceeeeecCCCc------------eeceeEEEE-eCCcEEEEEEEcCCCceEEEEeeCCCCCeEEe
Q 040662          218 YNVASQNLEILPYPPSI------------LFMYKYLTE-YDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEI  275 (365)
Q Consensus       218 ~d~~~~~~~~i~~p~~~------------~~~~~~Lve-~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v  275 (365)
                      ||+.+++|+.++.....            .....++.. .+|+++...    ...-.++..+.....|...
T Consensus       152 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g----~~~~~~~~~~~~~~~~~~~  218 (387)
T d1k3ia3         152 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG----PSTAMNWYYTSGSGDVKSA  218 (387)
T ss_dssp             EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECC----SSSEEEEEECSTTCEEEEE
T ss_pred             ecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEec----CcCCcEEecCcccCcEeec
Confidence            99999999877532110            011222322 357766533    2234566666666666654