Citrus Sinensis ID: 040665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390---
Protein Sequence
MDAASDPPMGLTENSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRGRKFDDSEEEDQQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDSSDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHcHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccHHHHHHcHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccccEEEEccccEEEEEccccccccHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHcccHHHHHcHHHHHHcccHccHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHEEHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHcHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHHHccccccccEEEEccccEEEEEEccccccEEEEEEcccccccccccccccEEEEcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcEEEEEc
Coil and Loop (DISEMBL)
mdaasdppmgltensapmyFSSAISLYKKQKKtlalnssafvdfgyLKDLTEILYRILegpertrgkikrgrkrgrkfddseeeDQQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKyssdssdmkklnsedLSQISLAAkccpsidssydkttlICEGIARRRVRDRLRKQVPYVLLFNcqrtktplfekhDKEMFKDILEKVKsgkaniprpggggvgllpHQIIKSLdaknengaEVAELQWSRMVEdmskkgkltnclavtdvsasmggfPMELSIALGLLVSelseepckgklitfsenpeihliqgdeinpetvfwnlryspstpvvaKQTGVAMLNGFSKNLLSVFLNeggnrpvllMSTKELVIYDRLICDELLIFQ
Flexible Loop (DISEMBL)
mdaasdppmgltensapMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYrilegpertrgkikrgrkrgrkfddseeedqqeevvekkdeemcsviskeearvlrKEREIAKARKalekyssdssdmkkLNSEDLSQISLAAKCcpsidssydkttlicegiarrrvrdrlrkqvpyvllfncqrtktplfekhdkEMFKDILEKVksgkaniprpggggvgLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Low Complexity Region (SEG)
MDAASDPPMGLTENSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPErtrgkikrgrkrgrkFDDSeeedqqeevvekkdeeMCSVISKEEARVLRKEREIAKARKALEKYSSDSSDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIArrrvrdrlrKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPggggvgLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Disordered region (IsUnstruct)
******************YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILE************************************************************************************ISLAAKCCPSIDSSYDKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEK*************GGVGLLPHQIIKSL*********VAELQWSRMVE***KKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIF*
Disordered Region (DISOPRED)
*************NSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILE***************************************************RKEREIAKARKALEKYSSD************SQISLAAKCCPSIDS*YDKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Disordered Region (DISEMBL)
*********GLTENSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERT**********************************CSVISKEEARVLRKEREIAKARK**************LNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Disordered Region (DISPRO)
**********LTENSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGP********************************KD*EMCSVISKEEARVLRKEREIAKARKALEKYSSDSSDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAASDPPMGLTENSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRGRKFDDSEEEDQQEEVVEKKDEEMCSVxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMSTKELVIYDRLICDELLIFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	393	2.2.26 [Sep-21-2011]
Q5UNY4	572	Uncharacterized protein L	N/A	no	0.440	0.302	0.272	4e-13

>sp|Q5UNY4|YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1

 Score = 76.3 bits (186), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 47/220 (21%)

Query: 144 ISLAAKCCPSIDSSYDKTTLICE-------GIARRRVRDRLRK----------------- 179
           ISL AK  PS    Y+K  L+         G+  R+ R  L K                 
Sbjct: 157 ISLCAKWAPSEKQHYNKAPLLIADSIRSQMGLTPRQYRKMLTKLRSHLQVLEMLMSTHQY 216

Query: 180 ------QVPYVLLF----------NCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPG 223
                 ++P V L           N Q  K+  F  +    +   L+ +  GK  +   G
Sbjct: 217 DKIDFSKLPSVALMKMKNAFNRDTNSQGIKSD-FRVNLHTSYTKYLQDLSKGKTKVNTKG 275

Query: 224 GGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFP 283
                + PH+++      + +  ++ E QW  + + +S  G   N  AV DVS SM G P
Sbjct: 276 -----IQPHELVGQY-LSSSDFDQLVESQWDAIKKGVSDSGTFNNVTAVVDVSGSMHGQP 329

Query: 284 MELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEI 323
           M+++IALG+LV+E +  P  G++ITF E P  H + G  +
Sbjct: 330 MQVAIALGILVAECTSGPYHGRVITFHEKPSWHHLTGSNL 369

Acanthamoeba polyphaga (taxid: 5757)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
15239862	655	uncharacterized protein [Arabidopsis tha	0.768	0.461	0.468	2e-79
297791547	657	hypothetical protein ARALYDRAFT_917317 [	0.765	0.458	0.467	4e-78
297791549	648	hypothetical protein ARALYDRAFT_494659 [	0.768	0.466	0.471	1e-77
15239861	643	uncharacterized protein [Arabidopsis tha	0.773	0.472	0.462	5e-75
359477727	651	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.770	0.465	0.455	3e-73
255581461	663	conserved hypothetical protein [Ricinus	0.773	0.458	0.463	1e-71
449531493	638	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.778	0.479	0.407	9e-66
449453862	638	PREDICTED: uncharacterized protein L728-	0.778	0.479	0.407	1e-65
224075499	651	predicted protein [Populus trichocarpa]	0.773	0.466	0.396	3e-65
147788765	624	hypothetical protein VITISV_044180 [Viti	0.770	0.485	0.446	2e-64

>gi|15239862|ref|NP_199153.1| uncharacterized protein [Arabidopsis thaliana] gi|8843893|dbj|BAA97419.1| unnamed protein product [Arabidopsis thaliana] gi|18450363|gb|AAK82505.2| AT5g43400/MWF20_9 [Arabidopsis thaliana] gi|25090369|gb|AAN72286.1| At5g43400/MWF20_9 [Arabidopsis thaliana] gi|332007573|gb|AED94956.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 179/382 (46%), Positives = 226/382 (59%), Gaps = 80/382 (20%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKR---- 74
           ++++A  LYK   KTLALN  A VDFGY KDL EIL+RILEG    RGK +  RKR    
Sbjct: 121 FYTAAFWLYKNHPKTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRKRVQRK 180

Query: 75  --GRKFDDSEEEDQQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS-- 130
             G++   SE   + E+ + +  EE+   + K +AR LRK+RE  KA+KA+ +Y+SD+  
Sbjct: 181 FKGKREKKSEISGEMEDRILENAEEIGGSVDKVKARALRKQREFEKAKKAVTRYNSDANY 240

Query: 131 ----------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARR--- 171
                           SD+K LNS  L++ISLA+K CPS+DSSYDK TLICE IARR   
Sbjct: 241 RLLFDRIADLFAVLLKSDLKYLNSNGLTKISLASKWCPSVDSSYDKATLICEAIARRMFP 300

Query: 172 --------------RVRDRLRKQ----------------------------VPYVLLFNC 189
                         R+RDRLRK+                            VP V + N 
Sbjct: 301 REEYEGIEEAHYAYRIRDRLRKEVLVPLHKALEFPELFMSAKEWNLLKYNRVPSVAMKNY 360

Query: 190 QRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSL--DAKNENGAE 247
           ++    LFE+HD E F + LE VKSGK  I         LLPHQII  L  D+ +E GAE
Sbjct: 361 KK----LFEEHDSERFTEFLEDVKSGKKKI-----AAGALLPHQIINQLEDDSGSEVGAE 411

Query: 248 VAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLI 307
           VAELQW+RMV+D++KKGKL N LAV DVS SM G PME+ +ALGLLVSELSEEP KGK+I
Sbjct: 412 VAELQWARMVDDLAKKGKLKNSLAVCDVSGSMSGTPMEVCVALGLLVSELSEEPWKGKVI 471

Query: 308 TFSENPEIHLIQGDEINPETVF 329
           TFSENPE+H++ G  +  +T F
Sbjct: 472 TFSENPELHIVTGSSLREKTQF 493

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791547|ref|XP_002863658.1| hypothetical protein ARALYDRAFT_917317 [Arabidopsis lyrata subsp. lyrata] gi|297309493|gb|EFH39917.1| hypothetical protein ARALYDRAFT_917317 [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 179/383 (46%), Positives = 230/383 (60%), Gaps = 82/383 (21%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKR-GRK 77
           ++++A  L+K   KTLALN  A VDFGY KDL EIL+RILEG +  RGK +  RKR  RK
Sbjct: 123 FYTAAFWLFKNHPKTLALNVPALVDFGYFKDLPEILFRILEGQQMERGKSRVWRKRVQRK 182

Query: 78  FDDSEEE------DQQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS- 130
           F    E+      D ++ ++E   EE+   + K +AR LRK+RE  KA+KALE+++SD+ 
Sbjct: 183 FKGKSEKRDEISGDMEDRILENV-EEIGGSVDKVKARALRKQREFEKAKKALERFNSDAN 241

Query: 131 -----------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARR-- 171
                            SD+K LNS +L++I LA+K CPS+DSSYDKTTLICE IARR  
Sbjct: 242 YRLLFDRIADLFAVMLKSDLKCLNSNELNKIGLASKWCPSVDSSYDKTTLICEAIARRMF 301

Query: 172 ---------------RVRDRLRKQ----------------------------VPYVLLFN 188
                          R+RDRLRK+                            VP V + N
Sbjct: 302 PREEYKDIEEAHYAYRIRDRLRKEVLVPLHKALEFPELFMSAKEWNLLKYNRVPSVAMKN 361

Query: 189 CQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSL--DAKNENGA 246
            ++    LFE+HD E F   LE VKSGK  I         LLPHQIIK L  ++ +E GA
Sbjct: 362 YKK----LFEEHDSERFSQFLEDVKSGKKKI-----AAGALLPHQIIKQLEDESGSEVGA 412

Query: 247 EVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKL 306
           EVAELQW+RMV+D++KKGKL N LAV DVS SM G PME+ +ALGLLVSEL+EEP KGK+
Sbjct: 413 EVAELQWARMVDDLAKKGKLKNSLAVCDVSGSMSGTPMEVCVALGLLVSELNEEPWKGKV 472

Query: 307 ITFSENPEIHLIQGDEINPETVF 329
           ITFSENP++H++ G  +  +T F
Sbjct: 473 ITFSENPQLHIVTGASLREKTEF 495

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791549|ref|XP_002863659.1| hypothetical protein ARALYDRAFT_494659 [Arabidopsis lyrata subsp. lyrata] gi|297309494|gb|EFH39918.1| hypothetical protein ARALYDRAFT_494659 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (758), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 180/382 (47%), Positives = 231/382 (60%), Gaps = 80/382 (20%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKR-GRK 77
           ++++A+ LYK   KTLALN  A VDFGY KDL EIL+RILEG +  RGK +  RKR  RK
Sbjct: 113 FYTAALWLYKNHPKTLALNIPALVDFGYFKDLPEILFRILEGQQMERGKKRVWRKRIQRK 172

Query: 78  FD-DSEEED----QQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS-- 130
           F  DSE+      + E+ + +  EE+   + K +AR LRK+RE  KA+KALE+Y+SD+  
Sbjct: 173 FKGDSEKRTAISGEMEDRILETAEEIGGPVDKIKARALRKQREFEKAKKALERYNSDANY 232

Query: 131 ----------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARR--- 171
                           SD+K LNS +L++I LA+K CPS+DSSYDKTTLICE IARR   
Sbjct: 233 RLLFDRIADLFADLLKSDLKCLNSNELNKIGLASKWCPSVDSSYDKTTLICEAIARRMFP 292

Query: 172 --------------RVRDRLRKQ----------------------------VPYVLLFNC 189
                         R+RDRLRK+                            VP V + N 
Sbjct: 293 RDEYEGIEEAHYAYRIRDRLRKEVLVPLHKALELPEVSMSAKEWNLLKYNRVPSVAMQN- 351

Query: 190 QRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSL--DAKNENGAE 247
            RT+   F +HD E F + L  V+SGK  I         LLPHQII  L  D++NE GAE
Sbjct: 352 YRTR---FVEHDNERFTEFLGDVRSGKKKI-----AAGALLPHQIISELENDSENEVGAE 403

Query: 248 VAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLI 307
           VAELQW+RMV+D++KKGKLTN LA+ DVS SM G PM + +ALGLLVSEL+EEP KGK+I
Sbjct: 404 VAELQWARMVDDLAKKGKLTNSLAICDVSGSMAGTPMNVCVALGLLVSELNEEPWKGKVI 463

Query: 308 TFSENPEIHLIQGDEINPETVF 329
           TFSENP++H++ G  +  +T F
Sbjct: 464 TFSENPQLHVVTGSSLREKTGF 485

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239861|ref|NP_199152.1| uncharacterized protein [Arabidopsis thaliana] gi|8843892|dbj|BAA97418.1| unnamed protein product [Arabidopsis thaliana] gi|71905593|gb|AAZ52774.1| hypothetical protein At5g43390 [Arabidopsis thaliana] gi|91805687|gb|ABE65572.1| hypothetical protein At5g43390 [Arabidopsis thaliana] gi|332007572|gb|AED94955.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  287 bits (735), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 175/378 (46%), Positives = 228/378 (60%), Gaps = 74/378 (19%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKR-GRK 77
           ++++A+ LYK   KTLALN    VDFGY KDL EIL RILEG +  RGK +  RKR  RK
Sbjct: 111 FYTAALWLYKNHPKTLALNIPTLVDFGYFKDLPEILLRILEGQQTERGKTRVWRKRIQRK 170

Query: 78  FD-DSEEE-----DQQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS- 130
           F  DSE++     D ++ ++E   EE    + K +AR LRK+RE  KA+KAL++Y+SD+ 
Sbjct: 171 FKGDSEKKSTISGDMEDRILETA-EETGGPVGKVKARALRKQREFEKAKKALDRYNSDAN 229

Query: 131 -----------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARR-- 171
                            SD++ LN+++L++ISLA+K CPS+DSSYDKTTLICE IARR  
Sbjct: 230 YRLLFDQIADLFAELLKSDLEYLNTDNLNKISLASKWCPSVDSSYDKTTLICEAIARRMF 289

Query: 172 ----------------RVRDRLRKQV----------PYV---------LLFN-----CQR 191
                           R+RDRLRK+V          P V         L +N       +
Sbjct: 290 LREEYEEGIEEVHYAYRIRDRLRKEVLVPLHKALELPEVSMSAKEWNLLKYNRVPSIAMQ 349

Query: 192 TKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAEL 251
             +  F +HD E F + LE VKSGK  +         LLPHQII  L   +E G EVAEL
Sbjct: 350 NYSSRFAEHDSERFTEFLEDVKSGKKKM-----AAGALLPHQIISQLLNDSE-GEEVAEL 403

Query: 252 QWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSE 311
           QW+RMV+D++KKGKL N LA+ DVS SM G PM + IALGLLVSEL+EEP KGK+ITFSE
Sbjct: 404 QWARMVDDLAKKGKLKNSLAICDVSGSMAGTPMNVCIALGLLVSELNEEPWKGKVITFSE 463

Query: 312 NPEIHLIQGDEINPETVF 329
           NP++H++ G  +  +T F
Sbjct: 464 NPQLHVVTGSSLREKTKF 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477727|ref|XP_003632014.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein L728-like [Vitis vinifera]

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 176/386 (45%), Positives = 221/386 (57%), Gaps = 83/386 (21%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTR----------GKI 68
           ++++ + L+    KTLA N+     FGY KD  EILYR+LEGP+  R          G+ 
Sbjct: 115 FYTAVLWLHDHHPKTLACNARVLASFGYFKDFLEILYRLLEGPKIRRIEKKDWLDRKGRK 174

Query: 69  KRGRKRGRKFDDSEEEDQQEEVVEKKDEEMC--SVISKEEARVLRKEREIAKARKALEKY 126
           K  RKR   F   E     E  VE+KD E      + KE+ARVLRKERE+A A++AL KY
Sbjct: 175 KNSRKRNSIFK-RENRPGVEFPVEEKDVEYMVEEFVDKEKARVLRKERELALAKRALHKY 233

Query: 127 SSDS------------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGI 168
           S+DS                  SD++ LNS +L +ISLA+K CP+IDSSYDK+TLICE I
Sbjct: 234 STDSNYQFLHDQISDLFAELLKSDIQYLNSGELYKISLASKWCPTIDSSYDKSTLICENI 293

Query: 169 ARR---------------------RVRDRLRKQV----------PYVLLFNCQRTKTP-- 195
           AR+                     RVRDRLRKQV          P V + + Q    P  
Sbjct: 294 ARKVYSREEYYPEYQGIEEAHYVNRVRDRLRKQVLVPLRKALELPEVFMCSNQWGSLPYN 353

Query: 196 ------------LFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNE 243
                       LF KHD E F   LEKV++GKA I         LLPH+II SL+   E
Sbjct: 354 RVASVAMKSYKSLFSKHDTERFGVYLEKVQTGKAKI-----AAGALLPHEIIASLN--EE 406

Query: 244 NGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCK 303
           +G +VAELQW+RMVED+SK G+LTNC AV DVS SM G PM++ +ALGLLVSELSE+P K
Sbjct: 407 DGEKVAELQWARMVEDLSKNGRLTNCSAVCDVSGSMSGTPMKVCVALGLLVSELSEDPWK 466

Query: 304 GKLITFSENPEIHLIQGDEINPETVF 329
           G +ITFS +PE+H IQGD +  +T F
Sbjct: 467 GNVITFSASPELHKIQGDSLVSKTEF 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581461|ref|XP_002531538.1| conserved hypothetical protein [Ricinus communis] gi|223528855|gb|EEF30857.1| conserved hypothetical protein [Ricinus communis]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 182/393 (46%), Positives = 227/393 (57%), Gaps = 89/393 (22%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTR------------- 65
           ++++A+ L+K   +TLALN  AF DFGY KD  EILYRILEG E  +             
Sbjct: 114 FYAAALWLHKHHPETLALNLKAFADFGYFKDFLEILYRILEGIEVRKLEKQEWISRKRGK 173

Query: 66  GKIKRGRKRGRKFDDSEE-------EDQQEEVVEKKDEEMCSVISKEEARVLRKEREIAK 118
            + KR  K+GR   +++E       ++ QE V + +  E  +   KE ARVLRKERE AK
Sbjct: 174 KQKKRISKKGRFNQENQETVQQTVNQENQETVQQTEGGEEKNKKEKESARVLRKEREFAK 233

Query: 119 ARKALEKYSSDS------------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDK 160
           A KAL KY SD+                  SD++ L S+   +ISLAAK CPSIDSS+DK
Sbjct: 234 AAKALNKYKSDANYRFLFDAIADLFADLLKSDIEALKSKQHHKISLAAKWCPSIDSSFDK 293

Query: 161 TTLICEGIARR--------------------RVRDRLRKQV----------PYVLL---- 186
            TLI E IARR                    RVRDRLRK+V          P V +    
Sbjct: 294 ATLIYEAIARRVFPRESYKEYQEVEESRYAFRVRDRLRKEVLVPLHKILELPEVYMSAKK 353

Query: 187 -----FN-----CQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIK 236
                +N       +T   LF KHD+E F++ L+ VKSGKA I         LLPH+II 
Sbjct: 354 WNSLPYNRVPSVAMKTYKALFLKHDEERFEEYLDNVKSGKAKI-----AAGALLPHEIIG 408

Query: 237 SLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSE 296
           +L  K+ENG +VAELQW+RMV+DMSKKGKL NC+AV DVS SM G PME+S+ALGLLVSE
Sbjct: 409 AL--KDENGGKVAELQWARMVDDMSKKGKLNNCIAVCDVSGSMEGIPMEVSVALGLLVSE 466

Query: 297 LSEEPCKGKLITFSENPEIHLIQGDEINPETVF 329
           LSEEP KGK  TFSE PE+H I+GD +  +T F
Sbjct: 467 LSEEPWKGKAFTFSEIPELHFIEGDSLFEKTEF 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531493|ref|XP_004172720.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein L728-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 157/385 (40%), Positives = 210/385 (54%), Gaps = 79/385 (20%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRG--- 75
           Y+++A+ LY    KTLA N  +  DFGY KDL EILYR+LEG +  + +    ++RG   
Sbjct: 120 YYTAALWLYNFHPKTLAGNIPSIADFGYFKDLPEILYRLLEGSDVRKNQKNEWKRRGLSV 179

Query: 76  --RKFDDSEEEDQQEEVVEKKDEEMC-------SVISKEEARVLRKEREIAKARKALEKY 126
              +F   + + +++E+    D E         S I KE+A   RK R+++ ARK +E++
Sbjct: 180 RHGRFKQEKPKTRKKEIQSSTDREANISKAMEKSRIEKEKASGERKLRKVSMARKVMERF 239

Query: 127 SSDS------------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGI 168
            +DS                  SD++ +NS D ++ISLAAK CPSIDSS+D++TL+CE I
Sbjct: 240 QADSNFQLLHDRISDFFTDCLKSDLQFMNSGDFTKISLAAKWCPSIDSSFDRSTLLCESI 299

Query: 169 ARR--------------------RVRDRLRKQV----------PYVLLFNCQRTKTPL-- 196
           AR+                    RVRDRLR  V          P V +   +    P   
Sbjct: 300 ARKIFPRELNPEYKEIEEAHYAYRVRDRLRTDVLVPLRKVLELPEVFIGANRWDSIPYNR 359

Query: 197 ------------FEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNEN 244
                       F KHD E F   L+ VK GK  I         LLPH+II SL    E+
Sbjct: 360 VASVAMKNYKEKFMKHDGERFAQYLKDVKDGKTKI-----AAGALLPHEIILSLFDGQED 414

Query: 245 GAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKG 304
           G EVAELQW RMV+D+ KKGKL  C+AV DVS SM G PM++ + LGLLVSELSE+P KG
Sbjct: 415 GGEVAELQWKRMVDDLLKKGKLRECIAVCDVSGSMMGIPMDVCVGLGLLVSELSEDPWKG 474

Query: 305 KLITFSENPEIHLIQGDEINPETVF 329
           K+ITFS NPE+H+IQGD +  +  F
Sbjct: 475 KVITFSANPELHMIQGDSLKSKAEF 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453862|ref|XP_004144675.1| PREDICTED: uncharacterized protein L728-like [Cucumis sativus]

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/385 (40%), Positives = 210/385 (54%), Gaps = 79/385 (20%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRG--- 75
           Y+++A+ LY    KTLA N  +  DFGY KDL EILYR+LEG +  + +    ++RG   
Sbjct: 120 YYTAALWLYNFHPKTLAGNIPSIADFGYFKDLPEILYRLLEGSDVRKNQKNEWKRRGLSV 179

Query: 76  --RKFDDSEEEDQQEEVVEKKDEEMC-------SVISKEEARVLRKEREIAKARKALEKY 126
              +F   + + +++E+    D E         S I KE+A   RK R+++ ARK +E++
Sbjct: 180 RHGRFKQEKPKTRKKEIQSSTDREANISKAMEKSRIEKEKASGERKLRKVSMARKVMERF 239

Query: 127 SSDS------------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGI 168
            +DS                  SD++ +NS D ++ISLAAK CPSIDSS+D++TL+CE I
Sbjct: 240 QADSNFQLLHDRISDFFTDCLKSDLQFMNSGDFTKISLAAKWCPSIDSSFDRSTLLCESI 299

Query: 169 ARR--------------------RVRDRLRKQV----------PYVLLFNCQRTKTPL-- 196
           AR+                    RVRDRLR  V          P V +   +    P   
Sbjct: 300 ARKIFPRELNPEYKEIEEAHYAYRVRDRLRTDVLVPLRKVLELPEVFIGANRWDSIPYNR 359

Query: 197 ------------FEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNEN 244
                       F KHD E F   L+ VK GK  I         LLPH+II SL    E+
Sbjct: 360 VASVAMKNYKEKFMKHDGERFAQYLKDVKDGKTKI-----AAGALLPHEIILSLFDGQED 414

Query: 245 GAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKG 304
           G EVAELQW RMV+D+ KKGKL  C+AV DVS SM G PM++ + LGLLVSELSE+P KG
Sbjct: 415 GGEVAELQWKRMVDDLLKKGKLRECIAVCDVSGSMMGIPMDVCVGLGLLVSELSEDPWKG 474

Query: 305 KLITFSENPEIHLIQGDEINPETVF 329
           K+ITFS NPE+H+IQGD +  +  F
Sbjct: 475 KVITFSANPELHMIQGDSLKSKAEF 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075499|ref|XP_002304655.1| predicted protein [Populus trichocarpa] gi|222842087|gb|EEE79634.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/401 (39%), Positives = 220/401 (54%), Gaps = 97/401 (24%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGP-----ERTRGKIKRGRK 73
           +++SAI L+    KTLA N  +  DFGY KDL EILYR+LEGP     ++   + ++GRK
Sbjct: 119 FYTSAIWLHNNHPKTLACNIPSMADFGYFKDLPEILYRLLEGPDVRKIQKQEWRQRKGRK 178

Query: 74  RGRK-------------FDDSEEEDQQEEV----------VEKKDEEMCSVISKEEARVL 110
            GR+             F  S+     +            +  ++E+  + + KE A + 
Sbjct: 179 TGRRAGFKIGQPKTLAPFQRSKRPKNAKSSRNAGPSIPIHIRIQNEKRRAEMEKENASIA 238

Query: 111 RKEREIAKARKALEKYSSDS------------------SDMKKLNSEDLSQISLAAKCCP 152
           RKER  A A+K +E+YS D                   +DM+ LNS + +++SLAAK CP
Sbjct: 239 RKERRAAMAKKVIERYSHDPDYRFLYEGVSDFFAGCLKTDMQHLNSSNTTKVSLAAKWCP 298

Query: 153 SIDSSYDKTTLICEGIARR--------------------RVRDRLRKQV----------P 182
           SIDSS+D++TL+CE IAR+                    RVRDRLRK+V          P
Sbjct: 299 SIDSSFDRSTLLCESIARKVFPRESYPEYEGIEEAHYAYRVRDRLRKEVLVPLRKVLELP 358

Query: 183 YVLLFNCQRTKTPL--------------FEKHDKEMFKDILEKVKSGKANIPRPGGGGVG 228
            V +   +    P               F KHD E F+  LE VK+GK  I         
Sbjct: 359 EVYIGANRWDSIPYNRVASVAMKFYKKKFFKHDAERFRQYLEDVKAGKTKI-----AAGA 413

Query: 229 LLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSI 288
           LLPH+II+SL+  +++G EVAELQW R+V+D+ +KGK+ NC+AV DVS SM G PME+S+
Sbjct: 414 LLPHEIIESLN--DDDGGEVAELQWKRIVDDLLQKGKMKNCIAVCDVSGSMSGTPMEVSV 471

Query: 289 ALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVF 329
           ALGLLVSEL EEP KGKLITFS+NP + +++GD +  +T F
Sbjct: 472 ALGLLVSELCEEPWKGKLITFSQNPMLQMVEGDSLLQKTEF 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788765|emb|CAN69580.1| hypothetical protein VITISV_044180 [Vitis vinifera]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 163/365 (44%), Positives = 206/365 (56%), Gaps = 62/365 (16%)

Query: 19  YFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTR----------GKI 68
           ++++ + L+    KTLA N+     FGY KD  EILYR+LEGPE  R          G+ 
Sbjct: 119 FYTAVLWLHDHHPKTLACNARVLASFGYFKDFLEILYRLLEGPEIRRIEKKDWLDRKGRK 178

Query: 69  KRGRKRGRKFDDSEEEDQQEEVVEKKDEEMC--SVISKEEARVLRKEREIAKARKALEKY 126
           K  RKR   F   E     E  VE+KD E      + KE+ARVLRKERE+A A++AL KY
Sbjct: 179 KNSRKRNSIFK-RENRPGVEFPVEEKDVEYMVEEFVDKEKARVLRKERELALAKRALHKY 237

Query: 127 SSDS------------------SDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGI 168
           S+DS                  SD++ LNS +L +ISLA+K      + Y +   I E  
Sbjct: 238 STDSNYQFLHDQISDLFAELLKSDIQYLNSGELXKISLASKWFILARNIYPEYQGIEEAH 297

Query: 169 ARRRVRDRLRKQV----------PYVLLFNCQRTKTP--------------LFEKHDKEM 204
              RVRDRLRKQV          P V + + Q    P              LF KHD E 
Sbjct: 298 YVNRVRDRLRKQVLVPLRKALELPEVFMCSNQWGSLPYNRVASVAMKSYKSLFSKHDTER 357

Query: 205 FKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKG 264
           F   LEKV++GKA I         LLPH+II SL+   E+G +VAELQW+RMVED+SK G
Sbjct: 358 FGVYLEKVQTGKAKI-----AAGALLPHEIIASLN--EEDGEKVAELQWARMVEDLSKNG 410

Query: 265 KLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEIN 324
           +LTNC AV DVS SM G PM++ +ALGLLVSELSE+P KG +ITFS +PE+H IQGD + 
Sbjct: 411 RLTNCSAVCDVSGSMSGTPMKVCVALGLLVSELSEDPWKGNVITFSASPELHKIQGDSLV 470

Query: 325 PETVF 329
            +T F
Sbjct: 471 SKTEF 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	393
TAIR|locus:2176501	655	AT5G43400 "AT5G43400" [Arabido	0.358	0.215	0.578	1.4e-91
TAIR|locus:2176491	643	AT5G43390 "AT5G43390" [Arabido	0.323	0.197	0.563	9.4e-87
TAIR|locus:2183911	673	AT5G13210 [Arabidopsis thalian	0.323	0.188	0.552	6.4e-72
TAIR|locus:2087333	715	AT3G24780 "AT3G24780" [Arabido	0.366	0.201	0.473	1.6e-69
DICTYBASE|DDB_G0281913	509	DDB_G0281913 "unknown" [Dictyo	0.569	0.440	0.276	4.4e-18
UNIPROTKB|G4MM18	795	MGG_06799 "Uncharacterized pro	0.183	0.090	0.392	5.6e-11

TAIR|locus:2176501 AT5G43400 "AT5G43400" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 1.4e-91, Sum P(6) = 1.4e-91
 Identities = 88/152 (57%), Positives = 108/152 (71%)

Query:   180 QVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPXXXXXXLLPHQIIKSL- 238
             +VP V + N ++    LFE+HD E F + LE VKSGK  I         LLPHQII  L 
Sbjct:   351 RVPSVAMKNYKK----LFEEHDSERFTEFLEDVKSGKKKI-----AAGALLPHQIINQLE 401

Query:   239 -DAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSEL 297
              D+ +E GAEVAELQW+RMV+D++KKGKL N LAV DVS SM G PME+ +ALGLLVSEL
Sbjct:   402 DDSGSEVGAEVAELQWARMVDDLAKKGKLKNSLAVCDVSGSMSGTPMEVCVALGLLVSEL 461

Query:   298 SEEPCKGKLITFSENPEIHLIQGDEINPETVF 329
             SEEP KGK+ITFSENPE+H++ G  +  +T F
Sbjct:   462 SEEPWKGKVITFSENPELHIVTGSSLREKTQF 493

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2176491 AT5G43390 "AT5G43390" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 9.4e-87, Sum P(6) = 9.4e-87
 Identities = 75/133 (56%), Positives = 93/133 (69%)

Query:   197 FEKHDKEMFKDILEKVKSGKANIPRPXXXXXXLLPHQIIKSLDAKNENGAEVAELQWSRM 256
             F +HD E F + LE VKSGK  +         LLPHQII  L   +  G EVAELQW+RM
Sbjct:   355 FAEHDSERFTEFLEDVKSGKKKM-----AAGALLPHQIISQL-LNDSEGEEVAELQWARM 408

Query:   257 VEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH 316
             V+D++KKGKL N LA+ DVS SM G PM + IALGLLVSEL+EEP KGK+ITFSENP++H
Sbjct:   409 VDDLAKKGKLKNSLAICDVSGSMAGTPMNVCIALGLLVSELNEEPWKGKVITFSENPQLH 468

Query:   317 LIQGDEINPETVF 329
             ++ G  +  +T F
Sbjct:   469 VVTGSSLREKTKF 481

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2183911 AT5G13210 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 6.4e-72, Sum P(5) = 6.4e-72
 Identities = 74/134 (55%), Positives = 96/134 (71%)

Query:   196 LFEKHDKEMFKDILEKVKSGKANIPRPXXXXXXLLPHQIIKSLDAKNENGAEVAELQWSR 255
             +F KHD E F+  L+  K+GK  +         +LPH+II+ LD  +  G +VAELQW R
Sbjct:   388 IFLKHDAERFQQYLDDAKAGKTKV-----AAGAVLPHEIIRELDGGD--GGQVAELQWKR 440

Query:   256 MVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEI 315
              V+DM +KG L NC+AV DVS SM G PME+ +ALGLLVSELSEEP KGKLITFS+NPE+
Sbjct:   441 TVDDMKEKGSLRNCIAVCDVSGSMNGEPMEVCVALGLLVSELSEEPWKGKLITFSQNPEL 500

Query:   316 HLIQGDEINPETVF 329
             HL++GD++  +T F
Sbjct:   501 HLVKGDDLYSKTEF 514

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2087333 AT3G24780 "AT3G24780" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.6e-69, Sum P(6) = 1.6e-69
 Identities = 72/152 (47%), Positives = 104/152 (68%)

Query:   179 KQVPYVLLFN-CQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPXXXXXXLLPHQIIKS 237
             + +PY  + +   ++   +F   D++ F+  L   K+GK  I         +LPH+II+ 
Sbjct:   422 QSLPYNRVASVAMKSYKEVFLYRDEKRFQQYLNDAKTGKTKI-----AAGAVLPHEIIRE 476

Query:   238 LDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSEL 297
             L+  +  G +VAELQW RMV+D+ +KG LTNC+A+ DVS SM G PME+S+ALGLLVSEL
Sbjct:   477 LNGGD--GGKVAELQWKRMVDDLKEKGSLTNCMAICDVSGSMNGEPMEVSVALGLLVSEL 534

Query:   298 SEEPCKGKLITFSENPEIHLIQGDEINPETVF 329
             SEEP KGKLITF ++PE+HL++GD++  +T F
Sbjct:   535 SEEPWKGKLITFRQSPELHLVKGDDLRSKTEF 566

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0281913 DDB_G0281913 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 239 (89.2 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 66/239 (27%), Positives = 111/239 (46%)

Query:   104 KEEARVLRKEREIAKARKALEKYSSDSSDMKKLNSEDLSQISLAAKCCPSI-DSSYDKTT 162
             K++   L K++E AK   A  K++         +S+   +I+L      S     Y K  
Sbjct:   145 KKDVESLSKDQEKAKISLAA-KWAPTEGHSDPTSSKACKKIALLLSANKSTAKKDYRKNY 203

Query:   163 LICE----GIAXXXXXXXXXKQVPYVLL-FNCQRTKTPLFEKHDKEMFKDILEKVKSGKA 217
             L+       +           ++ Y  +   C + +   FE+H+  +F + +E +K G+ 
Sbjct:   204 LVPLRKHLDVVERKMSANQWNEISYSKVPSRCMKLQRKAFERHEPSLFAEYIESLKKGET 263

Query:   218 NIPRPXXXXXXLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSA 277
              +         L PH+I+K    K     ++ E QW  + +++ K G L + L ++DVS 
Sbjct:   264 KV-----NAKQLFPHEIVKEY-LKGIAKDDILEEQWKVLEQEVRKLGSLKDALVLSDVSG 317

Query:   278 SMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEINPETVFWNLRYSP 336
             SM G PME+SIALG+L+S +   P K  +ITF E P  H + GD +  +    NL  +P
Sbjct:   318 SMSGTPMEVSIALGILISSVVAPPFKDLVITFHETPTFHKVTGDSLRDKVS--NLAAAP 374

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MM18 MGG_06799 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 126 (49.4 bits), Expect = 5.6e-11, Sum P(4) = 5.6e-11
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query:   247 EVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGG--F-----PMELSIALGLLVSELSE 299
             +VA+ QW  +V+ +   G L N +AV DVS SM    F     PM+ +I L LLV+++ +
Sbjct:   510 KVADGQWKTLVQRIRDSGTLDNSIAVCDVSGSMSSPMFKDQTCPMDSAIGLSLLVADVCK 569

Query:   300 EPCKGKLITFSENPEIHLI 318
              P  G  ITFS +P I  +
Sbjct:   570 PPFGGSFITFSTDPAIQTV 588

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	393
pfam11443	414	pfam11443, DUF2828, Domain of unknown function (DU	6e-48
pfam11443	414	pfam11443, DUF2828, Domain of unknown function (DU	6e-11
pfam11443	414	pfam11443, DUF2828, Domain of unknown function (DU	8e-05
cd00198	161	cd00198, vWFA, Von Willebrand factor type A (vWA)	0.003

>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828)

 Score =  167 bits (425), Expect = 6e-48
 Identities = 78/177 (44%), Positives = 97/177 (54%), Gaps = 33/177 (18%)

Query: 171 RRVRDRLRK----------QVPYVLLFNCQRT----------------KTPLFEKHDKEM 204
             VR R RK          Q+  V +    R                     F KHD E 
Sbjct: 108 GLVRRRYRKEVLVPLRKALQLVEVKM--SARQWDKIDYSRVPSVAMKRYKKAFLKHDGER 165

Query: 205 FKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKG 264
           F   LE VK GKA I         LLPH IIKS+ + + + ++VAELQW  +V+DM + G
Sbjct: 166 FTAYLEDVKKGKAKI-----NAGALLPHDIIKSVLSGSADDSKVAELQWKALVDDMRESG 220

Query: 265 KLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGD 321
            L NC+AV DVS SM G PM++ IALGLLVSELSE P KG++ITFS NP++H I+GD
Sbjct: 221 SLRNCIAVCDVSGSMSGPPMDVCIALGLLVSELSEGPFKGRVITFSSNPQLHHIKGD 277

This is a uncharacterized domain found in eukaryotes and viruses. Length = 414

>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828)

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 325 PETVFWNLRYSPS-TPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLM 373
           PE VFWNL  S S  PV +   GVA+++GFS  LL +FL  GG  P+ +M
Sbjct: 360 PELVFWNLAGSRSNVPVTSNDEGVALVSGFSPALLKLFLEGGGVNPMDVM 409

This is a uncharacterized domain found in eukaryotes and viruses. Length = 414

>gnl|CDD|221111 pfam11443, DUF2828, Domain of unknown function (DUF2828)

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 26  LYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRGRK 77
           L K+  KTLA N     +FGY KDL E+L RILE        +   R+R RK
Sbjct: 73  LAKEHPKTLAGNLEHIPEFGYWKDLPELLGRILE--------LGLVRRRYRK 116

This is a uncharacterized domain found in eukaryotes and viruses. Length = 414

>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 274 DVSASMGGFPMELSI-ALGLLVSELSEEPCKGK--LITFSENPEIHLIQGDEINPETVFW 330
           DVS SMGG  ++ +  AL  LVS LS  P   +  L+TF  N  + L    + +   +  
Sbjct: 8   DVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLE 67

Query: 331 NLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLNEGGNRPVLLMS 374
            +             G A+       LL         R ++L++
Sbjct: 68  AIDALKKGLGGGTNIGAALRLAL--ELLKSAKRPNARRVIILLT 109

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	393
PF11443	534	DUF2828: Domain of unknown function (DUF2828); Int	100.0
cd01461	171	vWA_interalpha_trypsin_inhibitor vWA_interalpha tr	96.55
cd01464	176	vWA_subfamily VWA subfamily: Von Willebrand factor	96.18
cd01465	170	vWA_subgroup VWA subgroup: Von Willebrand factor t	95.67
cd01470	198	vWA_complement_factors Complement factors B and C2	95.46
cd01462	152	VWA_YIEM_type VWA YIEM type: Von Willebrand factor	95.37
PF13768	155	VWA_3: von Willebrand factor type A domain	95.32
PF05762	222	VWA_CoxE: VWA domain containing CoxE-like protein;	94.6
PRK10997	487	yieM hypothetical protein; Provisional	94.53
cd01474	185	vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi	94.35
cd01450	161	vWFA_subfamily_ECM Von Willebrand factor type A (v	94.32
cd01463	190	vWA_VGCC_like VWA Voltage gated Calcium channel li	94.28
smart00327	177	VWA von Willebrand factor (vWF) type A domain. VWA	93.64
COG2425	437	Uncharacterized protein containing a von Willebran	93.3
cd01454	174	vWA_norD_type norD type: Denitrifying bacteria con	92.91
cd01456	206	vWA_ywmD_type VWA ywmD type:Von Willebrand factor	92.67
cd01471	186	vWA_micronemal_protein Micronemal proteins: The To	92.64
cd01472	164	vWA_collagen von Willebrand factor (vWF) type A do	92.5
cd01466	155	vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact	92.38
cd00198	161	vWFA Von Willebrand factor type A (vWA) domain was	91.84
cd01480	186	vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI	91.31
PF13519	172	VWA_2: von Willebrand factor type A domain; PDB: 3	90.99
cd01482	164	vWA_collagen_alphaI-XII-like Collagen: The extrace	90.93
TIGR03788	596	marine_srt_targ marine proteobacterial sortase tar	90.92
COG4245	207	TerY Uncharacterized protein encoded in toxicity p	90.19
COG3552	395	CoxE Protein containing von Willebrand factor type	89.94
cd01451	178	vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch	89.76
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	87.61
PF00092	178	VWA: von Willebrand factor type A domain; InterPro	86.71
PF11775	219	CobT_C: Cobalamin biosynthesis protein CobT VWA do	86.0
cd01467	180	vWA_BatA_type VWA BatA type: Von Willebrand factor	84.98
cd01457	199	vWA_ORF176_type VWA ORF176 type: Von Willebrand fa	84.87
cd01469	177	vWA_integrins_alpha_subunit Integrins are a class	84.56
PRK13685	326	hypothetical protein; Provisional	83.68
cd01476	163	VWA_integrin_invertebrates VWA_integrin (invertebr	82.11
PF09967	126	DUF2201: VWA-like domain (DUF2201); InterPro: IPR0	81.13
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	80.88

>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins

Probab=100.00  E-value=8.9e-109  Score=855.00  Aligned_cols=347  Identities=42%  Similarity=0.633  Sum_probs=313.1

Q ss_pred             CCCCCCCCCCcchHHHHHHHHHHhhhCHHHHHhchhhhccCCchhhHHHHHHHHhcCCccccccccccccCCCCCCCchh
Q 040665            4 ASDPPMGLTENSAPMYFSSAISLYKKQKKTLALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRGRKFDDSEE   83 (393)
Q Consensus         4 ~~~~~~glGks~r~~Fy~a~~WL~~~HP~TL~~NL~~l~~~GywKDLleLL~~~l~g~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
                      +||-+  .|||+|.+||++++|||++||+|+++|++.+++|||||||++||+++++|...+..++....         ..
T Consensus        53 lRdIR--~GkgeR~~F~~~~~wL~~~hP~tl~~nl~~i~e~GywkDLl~ll~~~~e~~~~~~~~~~~~~---------~~  121 (534)
T PF11443_consen   53 LRDIR--GGKGEREGFYRALKWLAENHPRTLAKNLPHIPEYGYWKDLLELLYTILEGKLSRKIDPKEVL---------LR  121 (534)
T ss_pred             ccCCC--CCCccHHHHHHHHHHHHhcCHHHHHHHhhcccccccHHHHHHHHHHHhcCccccccCHHHHh---------hh
Confidence            45656  56669999999999999999999999999999999999999999999999987654443221         12


Q ss_pred             HHHHHHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCh------------------hHHHhhccCCccccc
Q 040665           84 EDQQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS------------------SDMKKLNSEDLSQIS  145 (393)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~i~~~~a~~~r~~~~~~~a~~~l~~~~~d~------------------~Dl~~L~~g~~~~iS  145 (393)
                      ++.+++.+.++     ....+++|+++|+++++++|+++    .+|+                  +|+++|++|+.++||
T Consensus       122 ~~~~~~~~~~~-----~~~~~~~a~~~r~~~~~~~~~~~----~~d~~yr~L~~~v~~lfa~qL~~D~~~l~~~~~~~iS  192 (534)
T PF11443_consen  122 REERVANSEEK-----NQEEKAEAKEERKEKRAQLAKRA----SNDPFYRALHDTVARLFAEQLKKDLEALNSGKKEKIS  192 (534)
T ss_pred             hHHHHhhHHHh-----hhHhHHHhHHHHHHHHHHHHHHh----ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence            56667777667     56778889999999999998887    6777                  999999999889999


Q ss_pred             ccccccCCCCCCcchhhHHHHHHHHH---------------H-HHHHHHhhC--Ccc---------c-----chHHHHhc
Q 040665          146 LAAKCCPSIDSSYDKTTLICEGIARR---------------R-VRDRLRKQV--PYV---------L-----LFNCQRTK  193 (393)
Q Consensus       146 L~AKW~PS~~~s~d~~t~l~~~iA~~---------------~-~~~~LRk~i--pE~---------~-----py~AM~~Y  193 (393)
                      ||||||||+++|||++|++|++||++               | +++.|||++  +|+         +     |+.||++|
T Consensus       193 LaAKW~PS~~~s~d~~t~~a~~ia~~lfp~~~l~~~~~~yRK~~Ls~LRk~l~ivE~~ms~~~w~~i~Y~rVpS~Am~~y  272 (534)
T PF11443_consen  193 LAAKWAPSENSSHDRSTLIAKAIARLLFPRESLGRARKEYRKEVLSPLRKALEIVERYMSANDWDEIDYSRVPSVAMKKY  272 (534)
T ss_pred             hHHhhCCCCCCCcchHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHHHHhhcccHHHhhhccccCCCccccccHHHHHH
Confidence            99999999999999999999999987               4 666777776  443         2     55599999


Q ss_pred             hHHHhhhCHHHHHHHHHHhhcCCccccCCCCCCcccChHHHHHHhhhccccchhHHHHHHHHHHHHHhhcCCCcceEEEE
Q 040665          194 TPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVT  273 (393)
Q Consensus       194 ~~aF~khD~eRf~~yL~~V~~GkakI~a~~~~~~~L~Pheiv~~~~~~~~~~~~vae~QWk~lv~~l~~~g~l~n~iaV~  273 (393)
                      +++|.|||+|||++||++|++||+|||+   +  +|+|||||++++.++.+.+.++|+||++|||+++++|+++||||||
T Consensus       273 ~~aF~k~D~erf~~yl~~v~~G~~ki~~---~--~L~P~eiv~~~~~~~~~~~~~~e~qWk~lv~~~~~~g~l~n~iav~  347 (534)
T PF11443_consen  273 KKAFLKHDEERFQEYLEDVKKGKAKINA---G--TLLPHEIVASALKGDSDDSEVAELQWKTLVDYLKDSGSLENCIAVC  347 (534)
T ss_pred             HHHHHhhCHHHHHHHHHHHhcCcceecC---C--CCCHHHHHHHHhccccchhHHHHHHHHHHHHHHhccCCccceEEEE
Confidence            9999999999999999999999999999   9  9999999999998655556789999999999999999999999999


Q ss_pred             ecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeEeecCCCC------------------------------
Q 040665          274 DVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEI------------------------------  323 (393)
Q Consensus       274 DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~~i~g~~l------------------------------  323 (393)
                      ||||||+|+||+|||||||||||+++|||||+|||||++|+||+|+|.+|                              
T Consensus       348 DvSGSM~~~pm~vaiaLgll~ae~~~~pf~~~~ITFs~~P~~~~i~g~~l~ekv~~~~~~~wg~nTn~~aVFdlIL~~Av  427 (534)
T PF11443_consen  348 DVSGSMSGPPMDVAIALGLLIAELNKGPFKGRFITFSENPQLHKIKGDTLREKVRFIRRMDWGMNTNFQAVFDLILETAV  427 (534)
T ss_pred             ecCCccCccHHHHHHHHHHHHHHhcccccCCeEEeecCCceEEEecCCCHHHHHHHHHhCCcccCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999                              


Q ss_pred             -------------------------------------------------CceeEEeeCCCC-CCCCccccCCCeEEeccC
Q 040665          324 -------------------------------------------------NPETVFWNLRYS-PSTPVVAKQTGVAMLNGF  353 (393)
Q Consensus       324 -------------------------------------------------~PeiVFWNl~~~-~~~PV~~~~~GvaLVSGf  353 (393)
                                                                       |||||||||+++ .++||+++++||+|||||
T Consensus       428 ~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~~P~iVFWNl~~~~~~~PV~~~~~GvaLVSGf  507 (534)
T PF11443_consen  428 KNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYELPEIVFWNLRGRSSNKPVTANEKGVALVSGF  507 (534)
T ss_pred             HcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCCCCceEEeecCCCCCCCCceeCCCCeEEEecC
Confidence                                                             999999999998 459999999999999999


Q ss_pred             CHHHHHHHHhCCC--CChhhhccc
Q 040665          354 SKNLLSVFLNEGG--NRPVLLMST  375 (393)
Q Consensus       354 S~~llk~fl~~~~--~~P~~~M~~  375 (393)
                      ||+|||+||++|+  +||+++|++
T Consensus       508 S~~llk~~l~~~~~~~~P~~~m~~  531 (534)
T PF11443_consen  508 SPNLLKMFLEGGGKEMDPYSVMLK  531 (534)
T ss_pred             CHHHHHHHHcCCCCCCCHHHHHHH
Confidence            9999999999966  999999975

>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin)

Probab=96.55  E-value=0.0043  Score=53.90  Aligned_cols=49  Identities=29%  Similarity=0.301  Sum_probs=38.0

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      .|.+.|.|+||||.|.+++.+- +|..++..+..+.. =.+|+|++++...
T Consensus         3 ~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~l~~~~~-~~l~~Fs~~~~~~   52 (171)
T cd01461           3 KEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDY-FNIIGFSDTVEEF   52 (171)
T ss_pred             ceEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCCE-EEEEEeCCCceee
Confidence            3788999999999998888665 77777788876542 2689999986543

Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=96.18  E-value=0.0083  Score=53.65  Aligned_cols=49  Identities=33%  Similarity=0.456  Sum_probs=36.9

Q ss_pred             ceEEEEecCCCCCCchhHHH-HHHHHHHhhcCcCcC-----CCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELS-IALGLLVSELSEEPC-----KGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~va-iaLgLl~aEl~~~pf-----k~~~ITFS~~P~~~  316 (393)
                      +.+.|+|+||||.|.+++-+ -++-.++..+...+.     +=.+|+|+++.+.+
T Consensus         5 ~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~   59 (176)
T cd01464           5 PIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVI   59 (176)
T ss_pred             CEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEe
Confidence            56789999999999887655 366667777766553     34599999987654

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=95.67  E-value=0.023  Score=49.45  Aligned_cols=48  Identities=33%  Similarity=0.406  Sum_probs=35.7

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      |.+.|+|+||||.+..++.+. ++..++..+.... +=.+|+|+++++..
T Consensus         2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~~l~~~~-~v~li~f~~~~~~~   50 (170)
T cd01465           2 NLVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDD-RLAIVTYDGAAETV   50 (170)
T ss_pred             cEEEEEECCCCCCChhHHHHHHHHHHHHHhCCCCC-EEEEEEecCCccEE
Confidence            567899999999987677666 5566666665543 55689999987653

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n

>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation

Probab=95.46  E-value=0.023  Score=51.74  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      |.+.|+|+||||.+.+++.+- ++.-++..+...+  .+=.+|+|+++++.+
T Consensus         2 di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~   53 (198)
T cd01470           2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEI   53 (198)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEE
Confidence            567899999999988777555 6666777775432  455789999998765

They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.

>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=95.37  E-value=0.033  Score=48.20  Aligned_cols=51  Identities=24%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             ceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCc-CCCeeEEecCCCeeEee
Q 040665          268 NCLAVTDVSASMGGFPMELSIALGLLVSELSEEP-CKGKLITFSENPEIHLI  318 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~p-fk~~~ITFS~~P~~~~i  318 (393)
                      +.+.++|+||||.+.+++.+..+...+.+....+ =+=.+|+|++..+...+
T Consensus         2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~   53 (152)
T cd01462           2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIV   53 (152)
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEec
Confidence            5678999999999988888877776666644321 13358999998544443

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>PF13768 VWA_3: von Willebrand factor type A domain

Probab=95.32  E-value=0.029  Score=48.72  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             ceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCee
Q 040665          268 NCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEI  315 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~  315 (393)
                      +.+.|+|+||||.|.+-.+--+|-+++.+|+.+- +=.+|+|.+++..
T Consensus         2 ~vvilvD~S~Sm~g~~~~~k~al~~~l~~L~~~d-~fnii~f~~~~~~   48 (155)
T PF13768_consen    2 DVVILVDTSGSMSGEKELVKDALRAILRSLPPGD-RFNIIAFGSSVRP   48 (155)
T ss_pred             eEEEEEeCCCCCCCcHHHHHHHHHHHHHhCCCCC-EEEEEEeCCEeeE
Confidence            6789999999999987555558888899988766 5568999998663

>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown

Probab=94.60  E-value=0.027  Score=53.24  Aligned_cols=76  Identities=25%  Similarity=0.274  Sum_probs=41.3

Q ss_pred             ccChHHHHHHhhhccccchhHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeE
Q 040665          228 GLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLI  307 (393)
Q Consensus       228 ~L~Pheiv~~~~~~~~~~~~vae~QWk~lv~~l~~~g~l~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~I  307 (393)
                      .=++..|-+.+..    .....+..|+.=..     ..-...+++|||||||.+..-   +.|.++.+=....+ +=+++
T Consensus        28 lD~rrTir~~~r~----~g~~~~l~~r~~r~-----~~~~~lvvl~DvSGSM~~~s~---~~l~~~~~l~~~~~-~~~~f   94 (222)
T PF05762_consen   28 LDLRRTIRASLRT----GGEPLRLVRRRRRP-----RKPRRLVVLCDVSGSMAGYSE---FMLAFLYALQRQFR-RVRVF   94 (222)
T ss_pred             CCHHHHHHHHHhc----CCCcceeecccccc-----CCCccEEEEEeCCCChHHHHH---HHHHHHHHHHHhCC-CEEEE
Confidence            3344555555443    22355556655211     222478999999999997432   22333333222223 77888


Q ss_pred             EecCCCeeEee
Q 040665          308 TFSENPEIHLI  318 (393)
Q Consensus       308 TFS~~P~~~~i  318 (393)
                      .|+..  +..|
T Consensus        95 ~F~~~--l~~v  103 (222)
T PF05762_consen   95 VFSTR--LTEV  103 (222)
T ss_pred             EEeee--hhhh
Confidence            88874  4444

It is found as part of a CO oxidising (Cox) system operon in several bacteria [].

>PRK10997 yieM hypothetical protein; Provisional

Probab=94.53  E-value=0.053  Score=57.78  Aligned_cols=53  Identities=25%  Similarity=0.386  Sum_probs=37.0

Q ss_pred             CcceEEEEecCCCCCCchhHHHHHHHHHHhhc---CcCcCCCeeEEecCCCeeEeecC
Q 040665          266 LTNCLAVTDVSASMGGFPMELSIALGLLVSEL---SEEPCKGKLITFSENPEIHLIQG  320 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl---~~~pfk~~~ITFS~~P~~~~i~g  320 (393)
                      -...|+++|+||||.|.|.+.|.++++.++..   ....+  .+|.||+...-..+.+
T Consensus       323 kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~--~li~Fs~~i~~~~l~~  378 (487)
T PRK10997        323 RGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRC--YIMLFSTEVVTYELTG  378 (487)
T ss_pred             CCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCE--EEEEecCCceeeccCC
Confidence            45679999999999998877766655554433   33444  3999999765544554

>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax

Probab=94.35  E-value=0.07  Score=48.17  Aligned_cols=50  Identities=22%  Similarity=0.137  Sum_probs=32.8

Q ss_pred             cceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -|.+.|.|+||||.+......-.+--++..+..+--+=.+||||++++.+
T Consensus         5 ~Dvv~llD~SgSm~~~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~~~~   54 (185)
T cd01474           5 FDLYFVLDKSGSVAANWIEIYDFVEQLVDRFNSPGLRFSFITFSTRATKI   54 (185)
T ss_pred             eeEEEEEeCcCchhhhHHHHHHHHHHHHHHcCCCCcEEEEEEecCCceEE
Confidence            36788999999999854444322222333444444666799999998663

ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.

>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=94.32  E-value=0.071  Score=45.22  Aligned_cols=48  Identities=21%  Similarity=0.254  Sum_probs=36.7

Q ss_pred             ceEEEEecCCCCCCchhHHHHH-HHHHHhhcCcC--cCCCeeEEecCCCee
Q 040665          268 NCLAVTDVSASMGGFPMELSIA-LGLLVSELSEE--PCKGKLITFSENPEI  315 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~~--pfk~~~ITFS~~P~~  315 (393)
                      |.+.|+|+||||.+..++.+.. +.-++..+...  --+-.+|+|++++..
T Consensus         2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~   52 (161)
T cd01450           2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRV   52 (161)
T ss_pred             cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceE
Confidence            5778999999999877777774 67777777654  345568999997654

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A

>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta

Probab=94.28  E-value=0.082  Score=47.93  Aligned_cols=50  Identities=26%  Similarity=0.320  Sum_probs=36.2

Q ss_pred             CcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          266 LTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -.+++.|.|+||||.+..++.+- ++..++..+..+. +=.+|+|+++++..
T Consensus        13 p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~l~~~d-~v~lv~F~~~~~~~   63 (190)
T cd01463          13 PKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDND-FFNIITFSNEVNPV   63 (190)
T ss_pred             CceEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCCC-EEEEEEeCCCeeEE
Confidence            45888999999999998888775 4444555564332 33589999998764

The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.

>smart00327 VWA von Willebrand factor (vWF) type A domain

Probab=93.64  E-value=0.13  Score=43.95  Aligned_cols=48  Identities=27%  Similarity=0.295  Sum_probs=35.9

Q ss_pred             ceEEEEecCCCCCCchhHHHHHH-HHHHhhcCcC--cCCCeeEEecCCCee
Q 040665          268 NCLAVTDVSASMGGFPMELSIAL-GLLVSELSEE--PCKGKLITFSENPEI  315 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaiaL-gLl~aEl~~~--pfk~~~ITFS~~P~~  315 (393)
                      +.+.|+|+||||.+.+++.+... .-++.++...  -.+=.+|+|++.+..
T Consensus         3 ~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~   53 (177)
T smart00327        3 DVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATV   53 (177)
T ss_pred             cEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceE
Confidence            56789999999998888888864 5555566554  566678999996543

VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.

>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=93.30  E-value=0.14  Score=53.98  Aligned_cols=88  Identities=18%  Similarity=0.185  Sum_probs=54.6

Q ss_pred             ccChHHHHHHhhhccccchhHHHHHHHHHHHH-HhhcCCCcceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCC-e
Q 040665          228 GLLPHQIIKSLDAKNENGAEVAELQWSRMVED-MSKKGKLTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKG-K  305 (393)
Q Consensus       228 ~L~Pheiv~~~~~~~~~~~~vae~QWk~lv~~-l~~~g~l~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~-~  305 (393)
                      .|+|-|.+.-...- -...=-..+-|+.|..+ ++. .+-.-.++..|-||||+|.|+.+|=|.++-+.+...--.++ .
T Consensus       235 ~Llp~E~~~l~~~~-L~~eFy~kl~e~kLl~Yr~~g-k~~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~  312 (437)
T COG2425         235 RLLPIERASLADPI-LSVEFYRKLVEKKLLTYRLQG-KSEGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCY  312 (437)
T ss_pred             ccCcHHHHHhhhHH-HHHHHHHHhhhccchhhhhhc-CCCCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceE
Confidence            36666655533320 00112344455555553 332 33467888999999999999999888777777776655555 4


Q ss_pred             eEEecCCCeeEeec
Q 040665          306 LITFSENPEIHLIQ  319 (393)
Q Consensus       306 ~ITFS~~P~~~~i~  319 (393)
                      +|-|++  +++++.
T Consensus       313 ~~lF~s--~~~~~e  324 (437)
T COG2425         313 VILFDS--EVIEYE  324 (437)
T ss_pred             EEEecc--cceeee
Confidence            667777  666553

>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases

Probab=92.91  E-value=0.14  Score=45.52  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             eEEEEecCCCCCC-chhHHHHHHHHHHhhcCcC-cCCCeeEEecCCC
Q 040665          269 CLAVTDVSASMGG-FPMELSIALGLLVSELSEE-PCKGKLITFSENP  313 (393)
Q Consensus       269 ~iaV~DvSGSM~g-~Pm~vaiaLgLl~aEl~~~-pfk~~~ITFS~~P  313 (393)
                      +..++|+||||.+ ..++.|-.....+++.-.. --+=.+++|+++.
T Consensus         3 v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~   49 (174)
T cd01454           3 VTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDA   49 (174)
T ss_pred             EEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCC
Confidence            5678999999998 5888888766666654332 2345679999883

Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.

>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=92.67  E-value=0.2  Score=46.00  Aligned_cols=48  Identities=23%  Similarity=0.070  Sum_probs=33.7

Q ss_pred             CcceEEEEecCCCCC------CchhHHHHHHHHHHhhcCcCcCCCeeEEecCCC
Q 040665          266 LTNCLAVTDVSASMG------GFPMELSIALGLLVSELSEEPCKGKLITFSENP  313 (393)
Q Consensus       266 l~n~iaV~DvSGSM~------g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P  313 (393)
                      -.+.+.|+|+||||.      +..|+.+.....-+.+.-.+.-+=.+++|+++.
T Consensus        20 ~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~   73 (206)
T cd01456          20 PPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFSGDG   73 (206)
T ss_pred             CCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCC
Confidence            468999999999998      467887765444444433333456689999853

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell

Probab=92.64  E-value=0.27  Score=44.08  Aligned_cols=49  Identities=27%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             ceEEEEecCCCCCCch-hHHHHH-HHHHHhhcCcCcCCC--eeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFP-MELSIA-LGLLVSELSEEPCKG--KLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~P-m~vaia-LgLl~aEl~~~pfk~--~~ITFS~~P~~~  316 (393)
                      +.+.|.|+||||.+.. ++.+.. +.-++..+.-.|=..  .+|+|++.++.+
T Consensus         2 Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~   54 (186)
T cd01471           2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKEL   54 (186)
T ss_pred             cEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEE
Confidence            4567999999999877 665554 556666665444333  479999998753

In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.

>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins

Probab=92.50  E-value=0.22  Score=43.67  Aligned_cols=49  Identities=20%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      |.+.|.|+||||.+..++.+. ++.-++..+...+  -+=.+|+|+++++..
T Consensus         2 Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~   53 (164)
T cd01472           2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTE   53 (164)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEE
Confidence            678899999999986666554 3555556665332  334579999998764

This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.

>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=92.38  E-value=0.24  Score=43.62  Aligned_cols=47  Identities=34%  Similarity=0.488  Sum_probs=34.5

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCee
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEI  315 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~  315 (393)
                      +++.|.|+||||.+..++.+- ++..++.++.+.. +=.+|+|++.+..
T Consensus         2 ~v~~vlD~S~SM~~~rl~~ak~a~~~l~~~l~~~~-~~~li~F~~~~~~   49 (155)
T cd01466           2 DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDAD-RLSIVTFSTSAKR   49 (155)
T ss_pred             cEEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcc-eEEEEEecCCccc
Confidence            567899999999987666554 4666777776543 3568999998654

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,

>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=91.84  E-value=0.37  Score=39.68  Aligned_cols=49  Identities=35%  Similarity=0.430  Sum_probs=34.4

Q ss_pred             ceEEEEecCCCCCCchhHHHHH-HHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSIA-LGLLVSELSE--EPCKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~--~pfk~~~ITFS~~P~~~  316 (393)
                      +.+.|+|.||||....++.+.. +..++..+..  +..+=.+++|+..+...
T Consensus         2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~   53 (161)
T cd00198           2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVV   53 (161)
T ss_pred             cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCcccee
Confidence            4678999999996666666664 4444455554  46677889999876544

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.

>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=91.31  E-value=0.3  Score=44.31  Aligned_cols=50  Identities=14%  Similarity=0.211  Sum_probs=34.5

Q ss_pred             ceEEEEecCCCCCCchhHHHHHHHH-HHhhcC--------cCcCCCeeEEecCCCeeEe
Q 040665          268 NCLAVTDVSASMGGFPMELSIALGL-LVSELS--------EEPCKGKLITFSENPEIHL  317 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaiaLgL-l~aEl~--------~~pfk~~~ITFS~~P~~~~  317 (393)
                      +.+-|.|+||||.+.+++.+..... ++..+.        .+-.+=.+|+||+.|+++.
T Consensus         4 dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~   62 (186)
T cd01480           4 DITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEA   62 (186)
T ss_pred             eEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeE
Confidence            5678999999999888877664332 233332        2225668999999987653

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A

Probab=90.99  E-value=0.32  Score=41.41  Aligned_cols=46  Identities=28%  Similarity=0.489  Sum_probs=31.3

Q ss_pred             ceEEEEecCCCCCCc-----hhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCee
Q 040665          268 NCLAVTDVSASMGGF-----PMELSI-ALGLLVSELSEEPCKGKLITFSENPEI  315 (393)
Q Consensus       268 n~iaV~DvSGSM~g~-----Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~  315 (393)
                      |.+.|.|+||||.+.     -++.+. +|.-++.++...  +=.+++|++++.+
T Consensus         1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~l~~f~~~~~~   52 (172)
T PF13519_consen    1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLPGD--RVGLVSFSDSSRT   52 (172)
T ss_dssp             EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHTTS--EEEEEEESTSCEE
T ss_pred             CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCCCC--EEEEEEecccccc
Confidence            468899999999975     355555 566667665322  4458999998754

>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions

Probab=90.93  E-value=0.4  Score=42.33  Aligned_cols=49  Identities=22%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             ceEEEEecCCCCCCchhHHHHH-HHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSIA-LGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      |.+.|+|.||||.+..+.-+.. +--++..+.-.|  -+=.+|+||+.|+.+
T Consensus         2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~   53 (164)
T cd01482           2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTE   53 (164)
T ss_pred             CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEE
Confidence            5678999999999866665554 334455443333  445689999998654

The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.

>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein

Probab=90.92  E-value=0.38  Score=51.77  Aligned_cols=49  Identities=27%  Similarity=0.322  Sum_probs=36.0

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      .+.+.|+|+||||.|.+|+.+- +|..++..+..+. +=.+|+|+++.+..
T Consensus       272 ~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~L~~~d-~~~ii~F~~~~~~~  321 (596)
T TIGR03788       272 RELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGD-RFNIIQFDSDVTLL  321 (596)
T ss_pred             ceEEEEEECCCCCCCccHHHHHHHHHHHHHhCCCCC-EEEEEEECCcceEe
Confidence            4789999999999998887665 5555667776543 33578898887643

Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).

>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]

Probab=90.19  E-value=0.43  Score=45.60  Aligned_cols=44  Identities=30%  Similarity=0.532  Sum_probs=37.7

Q ss_pred             ceEEEEecCCCCCCchhHHH-HHHHHHHhhcCcCcCCC-----eeEEecC
Q 040665          268 NCLAVTDVSASMGGFPMELS-IALGLLVSELSEEPCKG-----KLITFSE  311 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~va-iaLgLl~aEl~~~pfk~-----~~ITFS~  311 (393)
                      -|+-+.|+||||.|.|+++- .+|-.++++|-+.|++=     .+|||.+
T Consensus         5 P~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~   54 (207)
T COG4245           5 PCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGG   54 (207)
T ss_pred             CEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecC
Confidence            47889999999999998754 57888999999999875     4799988

>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=89.94  E-value=0.26  Score=51.05  Aligned_cols=43  Identities=28%  Similarity=0.350  Sum_probs=30.5

Q ss_pred             CcceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCC
Q 040665          266 LTNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSEN  312 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~  312 (393)
                      -..-+++|||||||.+   ...+-|.|+-| +.+.+.+.++.+|+..
T Consensus       218 ~~~lvvL~DVSGSm~~---ys~~~L~l~hA-l~q~~~R~~~F~F~TR  260 (395)
T COG3552         218 KPPLVVLCDVSGSMSG---YSRIFLHLLHA-LRQQRSRVHVFLFGTR  260 (395)
T ss_pred             CCCeEEEEecccchhh---hHHHHHHHHHH-HHhcccceeEEEeech
Confidence            3467999999999997   23344444433 4556778889999875

>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto)

Probab=89.76  E-value=0.69  Score=41.56  Aligned_cols=43  Identities=26%  Similarity=0.191  Sum_probs=27.7

Q ss_pred             EEEEecCCCCCCc-hhHHHHHHHHHHhh-cCcCcCCCeeEEecCC
Q 040665          270 LAVTDVSASMGGF-PMELSIALGLLVSE-LSEEPCKGKLITFSEN  312 (393)
Q Consensus       270 iaV~DvSGSM~g~-Pm~vaiaLgLl~aE-l~~~pfk~~~ITFS~~  312 (393)
                      +.|.|+||||.+. .++.+......+.. ...+--+=.+|+|+++
T Consensus         4 ~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~   48 (178)
T cd01451           4 IFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGT   48 (178)
T ss_pred             EEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCC
Confidence            5689999999975 77777765544442 2222123347999875

In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=87.61  E-value=0.95  Score=42.34  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=37.0

Q ss_pred             ceEEEEecCCCCCCchhHHHHH-HHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSIA-LGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      +.+-|.|+||||.+..++-+.. +.-++..++-+|  .+=.+|+||++|+.+
T Consensus         4 DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~   55 (224)
T cd01475           4 DLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQE   55 (224)
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEE
Confidence            5677899999999888877775 555666676655  345689999998764

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma

Probab=86.71  E-value=0.93  Score=39.11  Aligned_cols=47  Identities=26%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhc--CcCcCCCeeEEecCCCe
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSEL--SEEPCKGKLITFSENPE  314 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl--~~~pfk~~~ITFS~~P~  314 (393)
                      |.+.|.|+||||++.-++.+. ++.-++..+  ..+-.+=.++||++++.
T Consensus         1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~   50 (178)
T PF00092_consen    1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR   50 (178)
T ss_dssp             EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE
T ss_pred             CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeecccc
Confidence            457799999999985555544 444455555  44446667899999987

Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....

>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain

Probab=86.00  E-value=0.86  Score=44.16  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=32.9

Q ss_pred             EEEEecCCCCCCchhHHHHHHHHHHhh-cCcCcCCCeeEEecCC
Q 040665          270 LAVTDVSASMGGFPMELSIALGLLVSE-LSEEPCKGKLITFSEN  312 (393)
Q Consensus       270 iaV~DvSGSM~g~Pm~vaiaLgLl~aE-l~~~pfk~~~ITFS~~  312 (393)
                      -.+.|-||||.|.|+++|+..+.++++ |..--.+-.++-|+..
T Consensus        16 tlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT~   59 (219)
T PF11775_consen   16 TLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTTR   59 (219)
T ss_pred             EEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeecC
Confidence            347899999999999999877777775 3334466677777776

>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=84.98  E-value=1.5  Score=38.61  Aligned_cols=47  Identities=19%  Similarity=0.090  Sum_probs=28.3

Q ss_pred             ceEEEEecCCCCCCc------hhHHHHHHHHHHhhcCcCcCCCeeEEecCCCee
Q 040665          268 NCLAVTDVSASMGGF------PMELSIALGLLVSELSEEPCKGKLITFSENPEI  315 (393)
Q Consensus       268 n~iaV~DvSGSM~g~------Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~  315 (393)
                      |.+.|+|+||||...      -++.+..+..-+.+... --+=.+|+|++.++.
T Consensus         4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~~   56 (180)
T cd01467           4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAFT   56 (180)
T ss_pred             eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCeee
Confidence            678899999999752      24555544433333321 123357899987653

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=84.87  E-value=1.8  Score=39.73  Aligned_cols=48  Identities=17%  Similarity=0.050  Sum_probs=26.7

Q ss_pred             cceEEEEecCCCCCCch-------hHHHHHHHHHHhh-cCcCcCC-CeeEEecCCCe
Q 040665          267 TNCLAVTDVSASMGGFP-------MELSIALGLLVSE-LSEEPCK-GKLITFSENPE  314 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~P-------m~vaiaLgLl~aE-l~~~pfk-~~~ITFS~~P~  314 (393)
                      .+++.++|+||||....       ++.+--+..-+++ +..-.-. -.+++|++++.
T Consensus         3 ~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~   59 (199)
T cd01457           3 RDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFR   59 (199)
T ss_pred             cCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcc
Confidence            37899999999998521       3333333222222 2222222 23688888753

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most

>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration

Probab=84.56  E-value=1.9  Score=38.92  Aligned_cols=49  Identities=20%  Similarity=0.171  Sum_probs=35.9

Q ss_pred             ceEEEEecCCCCCCchhHHHHH-HHHHHhhcCcCcC--CCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSIA-LGLLVSELSEEPC--KGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~~pf--k~~~ITFS~~P~~~  316 (393)
                      +.+-|.|+||||++..++-+.. +.-++..++..|-  +=.+|+||++|+.+
T Consensus         2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~   53 (177)
T cd01469           2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTE   53 (177)
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEE
Confidence            3567899999999766666664 4556677777664  44579999998764

Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.

>PRK13685 hypothetical protein; Provisional

Probab=83.68  E-value=2  Score=42.80  Aligned_cols=50  Identities=22%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CcceEEEEecCCCCCC-----chhHHHHHHH-HHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          266 LTNCLAVTDVSASMGG-----FPMELSIALG-LLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g-----~Pm~vaiaLg-Ll~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      ..+.+.|.|+||||.+     +-++.|-... -++.++..+ -+=.+|+|+.++.+.
T Consensus        88 ~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~-d~vglv~Fa~~a~~~  143 (326)
T PRK13685         88 RAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPG-INLGLIAFAGTATVL  143 (326)
T ss_pred             CceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCC-CeEEEEEEcCceeec
Confidence            4578899999999986     3466665443 344554332 234689999998754

>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions

Probab=82.11  E-value=3.7  Score=35.66  Aligned_cols=46  Identities=28%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             ceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCC--eeEEecCCC
Q 040665          268 NCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKG--KLITFSENP  313 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~--~~ITFS~~P  313 (393)
                      |.+.|.|+||||.+.--..--.+.-++..+...|-..  .+|+|++.+
T Consensus         2 dv~~llD~S~Sm~~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~   49 (163)
T cd01476           2 DLLFVLDSSGSVRGKFEKYKKYIERIVEGLEIGPTATRVALITYSGRG   49 (163)
T ss_pred             CEEEEEeCCcchhhhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCC
Confidence            5678999999998731111112333445555444333  479999954

Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.

>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function

Probab=81.13  E-value=2.3  Score=37.14  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=25.1

Q ss_pred             EEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCC
Q 040665          270 LAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENP  313 (393)
Q Consensus       270 iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P  313 (393)
                      .+++|+||||+..-+.-+++--.-+.+..  +.+=++|.|...=
T Consensus         2 ~vaiDtSGSis~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v   43 (126)
T PF09967_consen    2 VVAIDTSGSISDEELRRFLSEVAGILRRF--PAEVHVIQFDAEV   43 (126)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHhC--CCCEEEEEECCEe
Confidence            46889999999754443333222223322  5667778777653

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=80.88  E-value=2.6  Score=48.19  Aligned_cols=48  Identities=23%  Similarity=0.127  Sum_probs=31.9

Q ss_pred             eEEEEecCCCCCC-chhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          269 CLAVTDVSASMGG-FPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       269 ~iaV~DvSGSM~g-~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      ++.|.|+||||.+ .+++.+- |+..++.++-.+--+=.+|+|++++.+.
T Consensus       307 VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFsssA~vl  356 (863)
T TIGR00868       307 VCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDSAAYIK  356 (863)
T ss_pred             EEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECCceeEe
Confidence            5668999999986 4666543 4444555543332344579999998753

distributions. found a row in 1A13.INFO that was not parsed out

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	393
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 73/443 (16%), Positives = 148/443 (33%), Gaps = 130/443 (29%)

Query: 29  KQKKTLALNSSAFV---DFGYLKDLT-EILYR-----ILEGP---ERTRGKIKRGRKRGR 76
           + K  L++   AFV   D   ++D+   IL +     I+        T           R
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL----------R 66

Query: 77  KFDDSEEEDQQEEVVEKKDEE--------MCSVISKEEARVLRKEREIAKARKALEKYSS 128
            F       +QEE+V+K  EE        + S I  E+ +     R   + R   ++  +
Sbjct: 67  LFWTLL--SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYN 121

Query: 129 DSSDMKKLN---SEDLSQISLAAKCCPSIDSSYD----------KTTLICEGIARRRVRD 175
           D+    K N    +   ++  A      +  + +          KT +  +     +V+ 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 176 RLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVK-------SGKANIPRPGGGGVG 228
           ++  ++ ++ L NC   +T L      EM + +L ++           +NI         
Sbjct: 179 KMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 229 LL-------PHQ---IIKSLDAKNENGAEVAELQWS-RMVEDMSKKGKL---TNCLAVTD 274
            L       P++   ++  L         V     + +     +   K+   T    VTD
Sbjct: 233 ELRRLLKSKPYENCLLV--LL-------NV----QNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 275 V--SASMGGFPME--------------LSIALGLLVSELSEEPCKGKLITFSENP-EIHL 317
              +A+     ++              L   L     +L  E           NP  + +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-------NPRRLSI 332

Query: 318 IQGDEINPETVFW-NLRYSPSTPVVAK-QTGVAMLNG------FSKNLLSVFLNEGGNRP 369
           I  + I      W N ++     +    ++ + +L        F +  LSVF     + P
Sbjct: 333 I-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVF-PPSAHIP 388

Query: 370 VLLMST--KELVIYD-RLICDEL 389
            +L+S    +++  D  ++ ++L
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKL 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	393
2nvo_A	535	RO sixty-related protein, RSR; alpha helical repea	99.53
1yvr_A	538	RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein,	99.45
2x31_A	189	Magnesium-chelatase 60 kDa subunit; ligase, bacter	95.44
1q0p_A	223	Complement factor B; VON willebrand factor, MAC-1,	93.26
1atz_A	189	VON willebrand factor; collagen-binding, hemostasi	93.25
1mjn_A	179	Integrin alpha-L; rossmann fold, immune system; 1.	93.17
1mf7_A	194	Integrin alpha M; cell adhesion; 1.25A {Homo sapie	93.09
4hqo_A	266	Sporozoite surface protein 2; malaria, gliding mot	93.01
1shu_X	182	Anthrax toxin receptor 2; alpha/beta rossmann fold	92.7
2xgg_A	178	Microneme protein 2; A/I domain, cell adhesion, hy	92.49
1ijb_A	202	VON willebrand factor; dinucleotide-binding fold,	92.35
3ibs_A	218	Conserved hypothetical protein BATB; structural ge	92.14
3zqk_A	199	VON willebrand factor; blood clotting, adamts-13,	90.86
3n2n_F	185	Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho	90.81
1n3y_A	198	Integrin alpha-X; alpha/beta rossmann fold, cell a	90.76
1v7p_C	200	Integrin alpha-2; snake venom, C-type lectin, anta	90.6
4hqf_A	281	Thrombospondin-related anonymous protein, trap; ma	90.1
4fx5_A	464	VON willebrand factor type A; structural genomics,	89.75
3rag_A	242	Uncharacterized protein; structural genomics, PSI-	89.21
2b2x_A	223	Integrin alpha-1; computational design, antibody-a	89.21
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	88.5
1pt6_A	213	Integrin alpha-1; cell adhesion; 1.87A {Homo sapie	88.25
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	88.01
3hrz_D	741	Complement factor B; serine protease, glycosilated	85.24

>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}

Probab=99.53  E-value=1.6e-14  Score=149.52  Aligned_cols=169  Identities=16%  Similarity=0.167  Sum_probs=125.6

Q ss_pred             chHHHHhchHHHhhh------CHHHHHHHHHHhhcCCccccCCCCCCcccChHHHHHHhhhccccchhHHHHHHH---HH
Q 040665          186 LFNCQRTKTPLFEKH------DKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWS---RM  256 (393)
Q Consensus       186 py~AM~~Y~~aF~kh------D~eRf~~yL~~V~~GkakI~a~~~~~~~L~Pheiv~~~~~~~~~~~~vae~QWk---~l  256 (393)
                      ||.||.+|-..|.+|      |++|+++|++.+. ++.+|+.   +  .++|+++...+..-....+.+-..+|+   ++
T Consensus       270 p~~AllrNlr~~~~~g~~~~~~~~~~e~v~~~L~-d~~~v~~---s--~~~Pf~~~~a~r~y~~G~dd~r~idW~~~ar~  343 (535)
T 2nvo_A          270 GLTWLLRNLGNLGRVGVLTPNDSATVQAVIERLT-DPAALKR---G--RIHPLDALKARLVYAQGQGVRGKGTWLPVPRV  343 (535)
T ss_dssp             CHHHHHHHHHHHHHTTSSCTTCHHHHHHHHHHHT-CHHHHHH---T--TCCHHHHHHHHHHHHTSBCSTTCCBCCCCHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhC-CHhhHhh---c--CCCcHHHHHHHHHhhcccCccCCCCCcccHHH
Confidence            999999999999999      6779999999998 6778888   7  899999999887311101112223452   22


Q ss_pred             --------HHHHhhc-CCCcceEEEEecCCCCCC---------chhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeEee
Q 040665          257 --------VEDMSKK-GKLTNCLAVTDVSASMGG---------FPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLI  318 (393)
Q Consensus       257 --------v~~l~~~-g~l~n~iaV~DvSGSM~g---------~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~~i  318 (393)
                              +...... ..-.+.++++||||||.+         +++++|.+|+++....+.   +-.+|+||..+..+.+
T Consensus       344 ~~al~~a~~~~~~~~~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d---~v~lv~Fs~~~~~~~~  420 (535)
T 2nvo_A          344 VDALEEAFTLAFGNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP---DALTMGFAEQFRPLGI  420 (535)
T ss_dssp             HHHHHHHHHHHGGGCCCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS---EEEEEEEBSSEEECCC
T ss_pred             HHHHHHHHHHHhhcCCCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC---ceEEEEECCcceEcCC
Confidence                    1111110 123567778899999975         358899999988887666   6789999987644333


Q ss_pred             cC------------------CCC---------------------------------------------CceeEEeeCCCC
Q 040665          319 QG------------------DEI---------------------------------------------NPETVFWNLRYS  335 (393)
Q Consensus       319 ~g------------------~~l---------------------------------------------~PeiVFWNl~~~  335 (393)
                      ++                  .++                                             -|++|+||+.+.
T Consensus       421 ~~~~~l~~~l~~l~~~~~ggTdi~~~l~~a~~~~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~  500 (535)
T 2nvo_A          421 TPRDTLESAMQKAQSVSFGGTDCAQPILWAAQERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTAT  500 (535)
T ss_dssp             CTTCCHHHHHHHTCCSSBCCCCTTHHHHHHHHTTCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCS
T ss_pred             CcchhHHHHHHHHhhCCCCCccHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCC
Confidence            22                  122                                             689999999999


Q ss_pred             CCCCccccCCCeEEeccCCHHHHHHHHh
Q 040665          336 PSTPVVAKQTGVAMLNGFSKNLLSVFLN  363 (393)
Q Consensus       336 ~~~PV~~~~~GvaLVSGfS~~llk~fl~  363 (393)
                      +..|++.+.+|+++|+|||+++++.+-+
T Consensus       501 ~~~~~~~~~~~~~~i~g~se~~l~~Ia~  528 (535)
T 2nvo_A          501 EFSIADPQRRDMLDVVGFDAAAPNVMTA  528 (535)
T ss_dssp             CCCCSCTTCSSEEEEEECCTTHHHHHHH
T ss_pred             CcccCCCCCCCceeeeCCCHHHHHHHHH
Confidence            8899988999999999999999998853

>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A

Probab=99.45  E-value=9.3e-13  Score=135.84  Aligned_cols=269  Identities=14%  Similarity=0.172  Sum_probs=170.6

Q ss_pred             chHHHHHHHHHHhhhCHHHHHhchhhhccCCch--hhHHHHHHHHhcCCccccccccccccCCCCCCCchhHHHHHHHHh
Q 040665           15 SAPMYFSSAISLYKKQKKTLALNSSAFVDFGYL--KDLTEILYRILEGPERTRGKIKRGRKRGRKFDDSEEEDQQEEVVE   92 (393)
Q Consensus        15 ~r~~Fy~a~~WL~~~HP~TL~~NL~~l~~~Gyw--KDLleLL~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (393)
                      +|..+...+.|+.+.+|..|+.+|......|.|  ||++.+.....+   .                             
T Consensus       145 ~r~~r~av~~w~~~~~~~~la~~l~ky~~~~~~~~~Dll~l~h~~~~---~-----------------------------  192 (538)
T 1yvr_A          145 GRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKPA---N-----------------------------  192 (538)
T ss_dssp             CHHHHHHHHHHHHTSCHHHHHHHHTSCCCSSSCCHHHHHHHTTCCCS---S-----------------------------
T ss_pred             cHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCcHHHHhhhcCCCCc---H-----------------------------
Confidence            589999999999999999999999999999999  999877652110   0                             


Q ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhccCCcccccccccccCCCCCCcchhhHHHHHHHHH-
Q 040665           93 KKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDSSDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARR-  171 (393)
Q Consensus        93 ~~~~~~~~~i~~~~a~~~r~~~~~~~a~~~l~~~~~d~~Dl~~L~~g~~~~iSL~AKW~PS~~~s~d~~t~l~~~iA~~-  171 (393)
                      +.     ..                    ++.+|-.  ++.+        .   ++||+|+.+.+++... +.+.|... 
T Consensus       193 ~~-----~~--------------------l~~~~l~--~~~~--------~---~~k~~~~~~~~~~~~~-~~~~~~~~~  233 (538)
T 1yvr_A          193 EG-----LT--------------------MVAKYVS--KGWK--------E---VQEAYKEKELSPETEK-VLKYLEATE  233 (538)
T ss_dssp             HH-----HH--------------------HHHHHHH--TCHH--------H---HHHHTTTCCCCHHHHH-HHHHHHHHH
T ss_pred             HH-----HH--------------------HHHHHhc--CCHH--------H---HHHhhccccccccHHH-HHHHHHHHH
Confidence            00     00                    0110100  1111        1   3899999988764221 22222211 


Q ss_pred             ---------HHHHHHHhh-CC------------c-------ccchHHHHhchHHHhhhC-----HHHHHHHHHHhhcCCc
Q 040665          172 ---------RVRDRLRKQ-VP------------Y-------VLLFNCQRTKTPLFEKHD-----KEMFKDILEKVKSGKA  217 (393)
Q Consensus       172 ---------~~~~~LRk~-ip------------E-------~~py~AM~~Y~~aF~khD-----~eRf~~yL~~V~~Gka  217 (393)
                               ++...++++ ++            +       ..||.||.++-..|.+++     .++++++++.+.. +.
T Consensus       234 ~~~~~~~~~~~~~~i~~~~~t~E~~~~~l~~~~~~we~l~~~~~~~allrnlr~~~~~g~~~~~~~~~~~v~~~L~~-~~  312 (538)
T 1yvr_A          234 RVKRTKDELEIIHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTN-EK  312 (538)
T ss_dssp             HHHTCCCHHHHHHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTC-HH
T ss_pred             HHHhcCCHHHHHHHHHhcCCCHhhchhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-HH
Confidence                     455566664 22            1       129999999999999987     6799999999998 66


Q ss_pred             cccCCCCCCcccChHHHHHHhhhccccchhHHHHHHH------HHHH-H-Hhhc----CCCcceEEEEecCCCCCC----
Q 040665          218 NIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWS------RMVE-D-MSKK----GKLTNCLAVTDVSASMGG----  281 (393)
Q Consensus       218 kI~a~~~~~~~L~Pheiv~~~~~~~~~~~~vae~QWk------~lv~-~-l~~~----g~l~n~iaV~DvSGSM~g----  281 (393)
                      ++..   +  .++|+.+...+..-....+..-...|+      ...+ . .+..    ..-.+.+.|+|+||||.+    
T Consensus       313 ~v~~---s--~~~P~~~~~a~r~y~~g~~~~~~i~w~~~~r~~~al~~~~~~~~~~~~~~~~~v~lvvD~SgSM~~~~~~  387 (538)
T 1yvr_A          313 LLKK---A--RIHPFHILVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKLVEPTGKRFLLAIDVSASMNQRVLG  387 (538)
T ss_dssp             HHHH---T--TCCHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCCCCCCCCCEEEEEECSGGGGSBSTT
T ss_pred             hHhh---c--cCCcHHHHHHHHHhhccCCcCCCcCCCcchhHHHHHHHHHHHHHhhcCCCCceEEEEEECccccCCCCCC
Confidence            7777   6  799999998887311001111111222      1111 1 1111    234578889999999975    


Q ss_pred             ---chhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeEeec-----------------C-CCC-----------------
Q 040665          282 ---FPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQ-----------------G-DEI-----------------  323 (393)
Q Consensus       282 ---~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~~i~-----------------g-~~l-----------------  323 (393)
                         ...++|.+|++....-+.   +=.+|+|++....+.++                 | .++                 
T Consensus       388 ~~l~~~~~Aa~l~~~~~~~~d---~vglv~Fs~~~~~~~~t~~~~l~~~l~~l~~~~~GgT~i~~aL~~a~~~~~~~~~i  464 (538)
T 1yvr_A          388 SILNASVVAAAMCMLVARTEK---DSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKTNTAADIF  464 (538)
T ss_dssp             SSCBHHHHHHHHHHHHHHHCS---SEEEEEESSSEECCSCCTTSCHHHHHHHHTTCCCSCCCTTHHHHHHHHTTCCCSEE
T ss_pred             CcHHHHHHHHHHHHHHhccCC---ceEEEEECCCceEcCCCCcccHHHHHHHHhcCCCCCCcHHHHHHHHHhccCCCCEE
Confidence               235556666665554322   45678888643222111                 1 122                 


Q ss_pred             ----------------------------CceeEEeeCCCCCCCCccccCCCeEEeccCCHHHHHHHHh
Q 040665          324 ----------------------------NPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLN  363 (393)
Q Consensus       324 ----------------------------~PeiVFWNl~~~~~~PV~~~~~GvaLVSGfS~~llk~fl~  363 (393)
                                                  -+.+++|++.+....|+..+..|+..++|||+++|+++-+
T Consensus       465 IliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~~~~~~~~~~~~~i~g~~e~~l~~Ia~  532 (538)
T 1yvr_A          465 IVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRN  532 (538)
T ss_dssp             EEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEESSCTTCTTEEEEETTCTTHHHHHHH
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCCCcccCCCCCCceeeccCCHHHHHHHHH
Confidence                                        2345899999877778877899999999999999998853

>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}

Probab=95.44  E-value=0.016  Score=50.01  Aligned_cols=49  Identities=16%  Similarity=0.007  Sum_probs=33.7

Q ss_pred             CcceEEEEecCCCCCCchhHHHHHHHHHHh-hcCcCcCCCeeEEecC-CCe
Q 040665          266 LTNCLAVTDVSASMGGFPMELSIALGLLVS-ELSEEPCKGKLITFSE-NPE  314 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm~vaiaLgLl~a-El~~~pfk~~~ITFS~-~P~  314 (393)
                      -.+.+.|+|+||||.|..++.+......+. .+..+.-+=.+|+|++ .++
T Consensus         5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~   55 (189)
T 2x31_A            5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ   55 (189)
T ss_dssp             CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC
T ss_pred             CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce
Confidence            457889999999999888888775554444 4534445667999996 443

>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=93.26  E-value=0.078  Score=46.38  Aligned_cols=52  Identities=23%  Similarity=0.230  Sum_probs=36.3

Q ss_pred             CcceEEEEecCCCCCCchhHHHHH-HHHHHhhcCcCc--CCCeeEEecCCCeeEe
Q 040665          266 LTNCLAVTDVSASMGGFPMELSIA-LGLLVSELSEEP--CKGKLITFSENPEIHL  317 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~~p--fk~~~ITFS~~P~~~~  317 (393)
                      --+.+.|.|+||||.+..++.+.. +.-++..+...+  -+=.+|+|++.++.+.
T Consensus        15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~   69 (223)
T 1q0p_A           15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV   69 (223)
T ss_dssp             CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE
T ss_pred             ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee
Confidence            347888999999999877776663 444555554322  2445799999987753

>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A

Probab=93.25  E-value=0.096  Score=45.27  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=36.8

Q ss_pred             CcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          266 LTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      --+.+.|+|+||||.+..++.+- ++.-++..+..+|  -+=.+|+|+++++.+
T Consensus         5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~   58 (189)
T 1atz_A            5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTID   58 (189)
T ss_dssp             CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE
T ss_pred             ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEE
Confidence            34778899999999987777665 4555666666444  344579999998764

>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...

Probab=93.17  E-value=0.072  Score=46.08  Aligned_cols=49  Identities=12%  Similarity=0.067  Sum_probs=34.1

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      +.+-|+|+||||.+..++-+. ++.-++..+.....+=.+|+||++++.+
T Consensus         4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~   53 (179)
T 1mjn_A            4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE   53 (179)
T ss_dssp             EEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE
T ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE
Confidence            567799999999986555443 3444556664333455779999998764

>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G

Probab=93.09  E-value=0.069  Score=46.27  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -+.+.|.|+||||.+..++.+. ++.-++..+..+..+=.+|+|+++++.+
T Consensus         6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~   56 (194)
T 1mf7_A            6 SDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH   56 (194)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE
T ss_pred             eeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEE
Confidence            3678899999999986655544 4455666666333455789999998754

>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*

Probab=93.01  E-value=0.085  Score=48.91  Aligned_cols=50  Identities=20%  Similarity=0.072  Sum_probs=37.0

Q ss_pred             cceEEEEecCCCCCCchh--HHHHHHHHHHhhcCcCcCCCee--EEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPM--ELSIALGLLVSELSEEPCKGKL--ITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm--~vaiaLgLl~aEl~~~pfk~~~--ITFS~~P~~~  316 (393)
                      -|.+.|.|+||||.+..+  .+--++.-++..+.-+|-..+|  |+|+++++.+
T Consensus        19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~   72 (266)
T 4hqo_A           19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTEL   72 (266)
T ss_dssp             EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEE
T ss_pred             eeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceE
Confidence            467889999999997665  2444666777788766655555  9999998754

>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*

Probab=92.70  E-value=0.082  Score=44.88  Aligned_cols=50  Identities=20%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             cceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -+.+.|+|+||||.+..+...-.+--++..+-.+.-+=.+|+|+++++.+
T Consensus         7 ~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~   56 (182)
T 1shu_X            7 FDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATII   56 (182)
T ss_dssp             EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEE
T ss_pred             eeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEE
Confidence            47789999999999865532222222233332333444579999998754

>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}

Probab=92.49  E-value=0.1  Score=44.93  Aligned_cols=53  Identities=19%  Similarity=0.229  Sum_probs=37.2

Q ss_pred             CCCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          264 GKLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       264 g~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      ..--+.+.|.|+||||.+..++.+. ++.-++..+..+|  .+=.+|+|+++++.+
T Consensus        15 ~~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~   70 (178)
T 2xgg_A           15 TNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQ   70 (178)
T ss_dssp             TTCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE
T ss_pred             CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEE
Confidence            3345788999999999876665544 4555666776443  444679999998653

>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C

Probab=92.35  E-value=0.14  Score=45.15  Aligned_cols=50  Identities=8%  Similarity=0.084  Sum_probs=34.9

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcC--CCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPC--KGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pf--k~~~ITFS~~P~~~  316 (393)
                      -+.+.|.|+||||.+..++.+. ++.-++..+.-+|=  +=.+|+|+++++.+
T Consensus        14 ~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~   66 (202)
T 1ijb_A           14 LDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAY   66 (202)
T ss_dssp             EEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEE
Confidence            4678899999999986666554 35556666664443  33469999998754

>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}

Probab=92.14  E-value=0.13  Score=45.07  Aligned_cols=49  Identities=27%  Similarity=0.252  Sum_probs=34.1

Q ss_pred             CcceEEEEecCCCCCCc-----hhHHHHHH-HHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          266 LTNCLAVTDVSASMGGF-----PMELSIAL-GLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~-----Pm~vaiaL-gLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      --+.+.|+|+||||.+.     .++.+-.. .-++..+..  -+=.+|+|+.+++.+
T Consensus        11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~--~~v~lv~F~~~~~~~   65 (218)
T 3ibs_A           11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN--DKVGMIVFAGDAFTQ   65 (218)
T ss_dssp             CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS--CEEEEEEESSSEEEE
T ss_pred             CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC--CeEEEEEECCCceEe
Confidence            45788999999999974     67766643 444455532  233589999998765

>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*

Probab=90.86  E-value=0.21  Score=43.84  Aligned_cols=53  Identities=9%  Similarity=0.097  Sum_probs=37.7

Q ss_pred             CCCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          264 GKLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       264 g~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      ..--+.+.|.|+||||.+..++-+. ++.-++..+.-+|  -+=.+|+||++++.+
T Consensus        19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~   74 (199)
T 3zqk_A           19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVE   74 (199)
T ss_dssp             CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEE
T ss_pred             CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEE
Confidence            3456788899999999986665554 4455666776444  344679999998765

>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1

Probab=90.81  E-value=0.18  Score=42.89  Aligned_cols=50  Identities=16%  Similarity=0.063  Sum_probs=29.6

Q ss_pred             cceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -|.+.|.|+||||.+.--..--.+--++..+-.+--+=.+|+|+++++.+
T Consensus         8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~   57 (185)
T 3n2n_F            8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTL   57 (185)
T ss_dssp             EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEE
T ss_pred             eeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEE
Confidence            36788999999998631111112222333332333455689999998765

>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1

Probab=90.76  E-value=0.2  Score=43.07  Aligned_cols=50  Identities=16%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -+.+.|+|+||||.+..++... ++--++..+..+.-+=.+|+|+++++.+
T Consensus        10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~   60 (198)
T 1n3y_A           10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTH   60 (198)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEE
Confidence            4678899999999986555444 3344555665334455679999997654

>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A

Probab=90.60  E-value=0.37  Score=42.03  Aligned_cols=48  Identities=25%  Similarity=0.310  Sum_probs=32.2

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      -+.+.|+|+||||..  ++.+. .+.-++..+...|  -+=.+|+|+++++.+
T Consensus         7 ~div~vlD~SgSm~~--~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~   57 (200)
T 1v7p_C            7 IDVVVVCDESNSIYP--WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVV   57 (200)
T ss_dssp             EEEEEEEECCTTCCC--HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEE
T ss_pred             ccEEEEEECCCCccc--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEE
Confidence            467889999999984  44443 3444556665434  333569999998753

>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A

Probab=90.10  E-value=0.27  Score=45.57  Aligned_cols=51  Identities=16%  Similarity=0.023  Sum_probs=36.0

Q ss_pred             CcceEEEEecCCCCCCchh-HHH-HHHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665          266 LTNCLAVTDVSASMGGFPM-ELS-IALGLLVSELSEEP--CKGKLITFSENPEIH  316 (393)
Q Consensus       266 l~n~iaV~DvSGSM~g~Pm-~va-iaLgLl~aEl~~~p--fk~~~ITFS~~P~~~  316 (393)
                      --|.+.|.|+||||.+..+ +.+ -++.-++..+...+  -+=.+|+|+++++.+
T Consensus        21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~   75 (281)
T 4hqf_A           21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREI   75 (281)
T ss_dssp             CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEE
T ss_pred             ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEE
Confidence            3477899999999998655 433 35566677776543  344589999998654

>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}

Probab=89.75  E-value=0.2  Score=50.87  Aligned_cols=52  Identities=17%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             CCCcceEEEEecCCCCC--CchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          264 GKLTNCLAVTDVSASMG--GFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       264 g~l~n~iaV~DvSGSM~--g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      +.--+.+.|.|+||||.  +..|+.+. ++..++..+..+. +=.+|+|+++++.+
T Consensus        75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~d-rv~lV~Fs~~a~~~  129 (464)
T 4fx5_A           75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGA-FFAVVAGTEGARVV  129 (464)
T ss_dssp             -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTC-EEEEEEESSSEEEE
T ss_pred             CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCC-EEEEEEEcCceEEE
Confidence            34567889999999999  88888776 5555566665433 33579999998865

>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}

Probab=89.21  E-value=0.67  Score=44.04  Aligned_cols=55  Identities=22%  Similarity=0.165  Sum_probs=34.9

Q ss_pred             HHHHhhcCCCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCC--eeEEecCCC
Q 040665          257 VEDMSKKGKLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKG--KLITFSENP  313 (393)
Q Consensus       257 v~~l~~~g~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~--~~ITFS~~P  313 (393)
                      |+.+-+. .--+|+.++|+||||.+. |..+- ++--++..+...+-++  .+|||+.+|
T Consensus       126 ~~~l~e~-~~~~vvfLVDtSgSM~~k-l~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~  183 (242)
T 3rag_A          126 VEKLEDE-VALHLVVCLDTSASMRDK-IPTVREAVRDLALSLKVRSGPLAVSVIAFPGKG  183 (242)
T ss_dssp             HHHHHHH-SCEEEEEEEECSGGGTTT-HHHHHHHHHHHHHHHTTSSSCEEEEEEEESCST
T ss_pred             hhhhccc-CCCCEEEEEECcccHHHH-HHHHHHHHHHHHHHHhccCCCcEEEEEEECCCC
Confidence            4444333 346889999999999863 44333 4444555555444344  469999998

>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1

Probab=89.21  E-value=0.54  Score=41.74  Aligned_cols=50  Identities=20%  Similarity=0.169  Sum_probs=33.5

Q ss_pred             CCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665          265 KLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSE--EPCKGKLITFSENPEIH  316 (393)
Q Consensus       265 ~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~--~pfk~~~ITFS~~P~~~  316 (393)
                      .--+.+.|.|+||||..  ++.+. ++.-++..+..  +--+=.+|+|+++++.+
T Consensus        21 ~~~div~vlD~SgSM~~--~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~   73 (223)
T 2b2x_A           21 TQLDIVIVLDGSNSIYP--WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE   73 (223)
T ss_dssp             -CEEEEEEEECSTTCCC--HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEE
T ss_pred             CcceEEEEEECCCChhh--HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEE
Confidence            34577889999999994  55444 34445566653  33455679999998754

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=88.50  E-value=0.25  Score=49.25  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=36.1

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSE--EPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~--~pfk~~~ITFS~~P~~~  316 (393)
                      -+.+.|.|+||||.+..++.+. ++.-++..+..  +--+=.+|+|+++++.+
T Consensus        10 ~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~   62 (509)
T 2odp_A           10 LNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVL   62 (509)
T ss_dssp             EEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEE
T ss_pred             eeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCcee
Confidence            4678899999999987777665 45555666642  33445679999998864

>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A

Probab=88.25  E-value=0.57  Score=41.20  Aligned_cols=48  Identities=21%  Similarity=0.244  Sum_probs=32.6

Q ss_pred             cceEEEEecCCCCCCchhHHHHH-HHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSIA-LGLLVSELSE--EPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~--~pfk~~~ITFS~~P~~~  316 (393)
                      -+.+.|.|+||||.  +++.+.. +.-++..+.-  +--+=.+|+|+++++.+
T Consensus         8 ~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~   58 (213)
T 1pt6_A            8 LDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE   58 (213)
T ss_dssp             EEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEE
T ss_pred             ccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEE
Confidence            47788999999999  4555543 4445555552  33444579999998754

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=88.01  E-value=0.37  Score=47.71  Aligned_cols=50  Identities=24%  Similarity=0.260  Sum_probs=35.5

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeEe
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIHL  317 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~~  317 (393)
                      +.+.|.|+||||.+..++.+. ++.-++.++...+  -+=.+|+|+++++.+.
T Consensus         3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~   55 (497)
T 1rrk_A            3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV   55 (497)
T ss_dssp             EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE
T ss_pred             eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee
Confidence            567899999999987777765 3455566654433  2334699999987654

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=85.24  E-value=0.6  Score=48.64  Aligned_cols=50  Identities=26%  Similarity=0.278  Sum_probs=36.2

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCC--CeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCK--GKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk--~~~ITFS~~P~~~  316 (393)
                      -|.+.|.|+||||.+..++.+. ++.-++..+...+-+  =.+|+|+++++.+
T Consensus       244 ~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~  296 (741)
T 3hrz_D          244 MNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIW  296 (741)
T ss_dssp             EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEE
T ss_pred             eeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCcee
Confidence            4678899999999987776665 455566666654433  3689999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	393
d1yvra2	174	60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c	98.81
d1shux_	181	Capillary morphogenesis protein 2 domain {Human (H	94.38
d1q0pa_	209	Complement factor B domain {Human (Homo sapiens) [	90.97
d1n3ya_	189	Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI	87.72
d1mf7a_	194	Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub	84.24
d1jeyb2	236	Ku80 subunit N-terminal domain {Human (Homo sapien	81.03

>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: RoRNP C-terminal domain-like
domain: 60-kda SS-A/Ro ribonucleoprotein, RoRNP
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.81  E-value=4.1e-09  Score=89.95  Aligned_cols=92  Identities=20%  Similarity=0.209  Sum_probs=69.4

Q ss_pred             cceEEEEecCCCCCC-------chhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeEeecC-CCC---------------
Q 040665          267 TNCLAVTDVSASMGG-------FPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQG-DEI---------------  323 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g-------~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~~i~g-~~l---------------  323 (393)
                      ...+.++|+||||.+       ..++.|.++++....-   ..+-.+|+|++.+..+.+.. .++               
T Consensus         6 ~~~vl~iD~SGSM~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~vv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ggT   82 (174)
T d1yvra2           6 KRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVART---EKDSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGST   82 (174)
T ss_dssp             CCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHH---CSSEEEEEESSSEECCSCCTTSCHHHHHHHHTTCCCSCC
T ss_pred             CeEEEEEECccccCCcccCccHHHHHHHHHHHHHhhcc---CCcEEEEEecCCccccccCccchHHHHHHHhhccccccc
Confidence            467889999999964       2445555555544433   23788999999886665433 222               


Q ss_pred             -----------------------------------------------CceeEEeeCCCCCCCCccccCCCeEEeccCCHH
Q 040665          324 -----------------------------------------------NPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKN  356 (393)
Q Consensus       324 -----------------------------------------------~PeiVFWNl~~~~~~PV~~~~~GvaLVSGfS~~  356 (393)
                                                                     -+++|+|++++....|...+++|+..++|||++
T Consensus        83 ~i~~al~~a~~~~~~~~~ivllTDg~~~~g~~~~~~~l~~y~~~~~~~~~~~~i~l~~~g~~~~~~~~~~~~~i~Gfs~~  162 (174)
T d1yvra2          83 DCALPMLWAQKTNTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSG  162 (174)
T ss_dssp             CTTHHHHHHHHTTCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEESSCTTCTTEEEEETTCTT
T ss_pred             cHHHHHHHHHhhhccCCEEEEEeCCCccCCCCCHHHHHHHHHHHcCCCcEEEEEECcCCCCcccCCCCCCcEEEecCCHH
Confidence                                                           679999999987766788899999999999999


Q ss_pred             HHHHH
Q 040665          357 LLSVF  361 (393)
Q Consensus       357 llk~f  361 (393)
                      ++|++
T Consensus       163 ~~~~i  167 (174)
T d1yvra2         163 ALDVI  167 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99975

>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Capillary morphogenesis protein 2 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.013  Score=48.58  Aligned_cols=50  Identities=20%  Similarity=0.150  Sum_probs=38.6

Q ss_pred             cceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -+.+.|+|+||||++...++--.+.-++..+..+.-+=.+|+||++|+.+
T Consensus         6 ~Div~llD~S~Sm~~~~~~~k~~~~~~~~~~~~~~~rvglv~fs~~~~~~   55 (181)
T d1shux_           6 FDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATII   55 (181)
T ss_dssp             EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEE
T ss_pred             eEEEEEEeCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEEEeecceEEE
Confidence            36788999999999865555555555666666666778899999999865

>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Complement factor B domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.1  Score=43.42  Aligned_cols=49  Identities=24%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcC--CCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPC--KGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pf--k~~~ITFS~~P~~~  316 (393)
                      |.+.|+|+||||++..++.+. ++--++..+...+-  +=.+|+|++++..+
T Consensus         3 DivfvlD~SgSm~~~~~~~~k~~~~~li~~l~~~~~~~rv~lv~f~~~~~~~   54 (209)
T d1q0pa_           3 NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIW   54 (209)
T ss_dssp             EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEE
T ss_pred             CEEEEEeCCCCCChHHHHHHHHHHHHHHHhcccCCCCcEEEEEEecCceeEE
Confidence            467899999999987776665 45555666654443  33689999998754

>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha-x beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.21  Score=41.25  Aligned_cols=49  Identities=16%  Similarity=0.232  Sum_probs=35.7

Q ss_pred             ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      +.+.|+|+||||++.-+.-.. .+--++..++.+..+=.+|+|+++++.+
T Consensus         4 DivfvlD~S~Sm~~~~~~~~k~~~~~~i~~l~~~~~rv~vv~fs~~~~~~   53 (189)
T d1n3ya_           4 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTH   53 (189)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHHHHHHHHhCCCCCEEEEEEeeccceee
Confidence            568899999999875444333 3445566777666666789999999876

>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Integrin A (or I) domain
domain: Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.24  E-value=0.37  Score=39.93  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665          267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH  316 (393)
Q Consensus       267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~  316 (393)
                      -|.+.|+|.||||++.-++-+. .+.-++.+++...-+=.+|+|+++|+.+
T Consensus         6 ~DivfvlD~S~s~~~~~~~~~k~f~~~iv~~l~~~~~rv~vv~fs~~~~~~   56 (194)
T d1mf7a_           6 SDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH   56 (194)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCcCCceEEEEEEeccceeE
Confidence            3778899999999976666555 3445566665443344589999999864

>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Ku80 subunit N-terminal domain
domain: Ku80 subunit N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.03  E-value=0.79  Score=38.19  Aligned_cols=51  Identities=18%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             eEEEEecCCCCCC------chhHHHH-HHHHHHhhcCcCcCCC--eeEEecCCCeeEeec
Q 040665          269 CLAVTDVSASMGG------FPMELSI-ALGLLVSELSEEPCKG--KLITFSENPEIHLIQ  319 (393)
Q Consensus       269 ~iaV~DvSGSM~g------~Pm~vai-aLgLl~aEl~~~pfk~--~~ITFS~~P~~~~i~  319 (393)
                      .+.|+|||+||..      ++++.|. ++..++..+-...-++  .+|+|+..+.-+...
T Consensus         5 iv~~lD~S~SM~~~~~~~~srl~~ak~~~~~~v~~~~~~~~~d~vglV~f~~~~t~~~~~   64 (236)
T d1jeyb2           5 VVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLS   64 (236)
T ss_dssp             EEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTC
T ss_pred             EEEEEECChhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcCCCcccccc
Confidence            4678899999974      3588887 5566666652211122  579998887554443