Citrus Sinensis ID: 040681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.207 | 0.188 | 0.336 | 5e-06 | |
| O22161 | 930 | Protein ARABIDILLO 1 OS=A | no | no | 0.134 | 0.086 | 0.367 | 0.0002 | |
| Q7Z5J8 | 1434 | Ankyrin and armadillo rep | yes | no | 0.223 | 0.092 | 0.255 | 0.0003 | |
| B9DHT4 | 710 | ARM REPEAT PROTEIN INTERA | no | no | 0.193 | 0.161 | 0.268 | 0.0007 | |
| P52171 | 523 | Importin subunit alpha-2 | N/A | no | 0.190 | 0.216 | 0.280 | 0.0008 |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function desciption |
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Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228
Q DR AA E+ LAK N+ N+ I G +P L+ LL + S Q A T++ N++
Sbjct: 368 QPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSI 427
Query: 229 DQE-RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287
QE + +++ S VP IV+VL M+ + A+ + ++ D + I PL
Sbjct: 428 CQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDE-NKVTIGAAGAIPPL 486
Query: 288 VTLLS 292
VTLLS
Sbjct: 487 VTLLS 491
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O22161|ADLO1_ARATH Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 190 NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL 249
N I EGGVPPL+ L + A + AA AL+N+A + IV E GVP +V++
Sbjct: 687 NSVAIGREGGVPPLIALARSEAE-DVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLC 745
Query: 250 SDSIMKVQIQVASLV------ARMAEH 270
S S+ K+ +A+L RM E+
Sbjct: 746 SSSVSKMARFMAALALAYMFDGRMDEY 772
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Promotes lateral root initiation and development, independently of auxin (IAA) and abscisis acid (ABA). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Z5J8|ANKAR_HUMAN Ankyrin and armadillo repeat-containing protein OS=Homo sapiens GN=ANKAR PE=2 SV=3 | Back alignment and function description |
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Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 158 VW-SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQ 216
VW + + +Q R+ A + L + ND+ + I++ G +P L+ LLK ++ + Q
Sbjct: 701 VWKTLVEMLQCESYKRRMMAVMSLEVICLANDQYWRCILDAGTIPALINLLK-SSKIKLQ 759
Query: 217 SAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276
L NI+ + V +V G+P+++N+L +V + A ++ +A+ + +D
Sbjct: 760 CKTVGLLSNISTHKSAVHALVEAGGIPSLINLLVCDEPEVHSRCAVILYDIAQCE--NKD 817
Query: 277 DFARENVIRPLVTLLSF 293
A+ N I L+ LL+
Sbjct: 818 VIAKYNGIPSLINLLNL 834
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Homo sapiens (taxid: 9606) |
| >sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 176 AAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA--NDQERV 233
AA + +LA +N K + EGG+PPL++LL E + S+ Q AAA AL +A ND +
Sbjct: 176 AADAITNLAHENSSIKTRVRVEGGIPPLVELL-EFSDSKVQRAAAGALRTLAFKNDDNKN 234
Query: 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+++ +PT++ +L + + ++ + + + ++P++ LLS
Sbjct: 235 QIVECN-ALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLS 292
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May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|P52171|IMA2_XENLA Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2 | Back alignment and function description |
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Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 183 LAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRVIVSELG 241
L+K+ + I+E G +P L++ L +S Q AA AL NIA+ ++ + +V
Sbjct: 101 LSKERNPPLNDIIEAGLIPKLVEFLSYHNNSTLQFEAAWALTNIASGTSDQTKSVVDGGA 160
Query: 242 VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFET 295
+P ++++S + + Q + +A L +D NVI PL+TL++ +T
Sbjct: 161 IPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALISCNVIPPLLTLVNPQT 214
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It is essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope. Xenopus laevis (taxid: 8355) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| 224107791 | 610 | predicted protein [Populus trichocarpa] | 0.983 | 0.957 | 0.696 | 0.0 | |
| 356497349 | 611 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.959 | 0.689 | 0.0 | |
| 255574007 | 613 | conserved hypothetical protein [Ricinus | 0.988 | 0.957 | 0.678 | 0.0 | |
| 449450430 | 606 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.943 | 0.673 | 0.0 | |
| 356502041 | 619 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.954 | 0.683 | 0.0 | |
| 357485695 | 656 | hypothetical protein MTR_5g033190 [Medic | 0.981 | 0.888 | 0.665 | 0.0 | |
| 15231578 | 615 | armadillo repeat only 4 protein [Arabido | 0.983 | 0.949 | 0.633 | 0.0 | |
| 297814884 | 614 | armadillo/beta-catenin repeat family pro | 0.983 | 0.951 | 0.629 | 0.0 | |
| 224135917 | 596 | predicted protein [Populus trichocarpa] | 0.978 | 0.974 | 0.617 | 0.0 | |
| 225470581 | 605 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.965 | 0.608 | 0.0 |
| >gi|224107791|ref|XP_002314601.1| predicted protein [Populus trichocarpa] gi|222863641|gb|EEF00772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/613 (69%), Positives = 499/613 (81%), Gaps = 29/613 (4%)
Query: 6 EEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSL 65
EEKRIE+EL+ ILLAERVRSAVDE+ESFKAEC VGK VD + + LR VR AQS
Sbjct: 3 EEKRIEEELACAILLAERVRSAVDEAESFKAECNHVGKHVDTIVEKLRAHVR---SAQSF 59
Query: 66 YERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRW 125
YERPIRR+V+EV KNLER+LTLVRKCKR++V RRV TI+SAADFRK++NLL+ASVGDM+W
Sbjct: 60 YERPIRRIVAEVCKNLERALTLVRKCKRRNVFRRVFTIISAADFRKVINLLEASVGDMKW 119
Query: 126 LLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAK 185
L SI DS N + GIV+TLPPIASNDP+L+WVWS I++I MG L ++IEAA +LASLA
Sbjct: 120 LSSILDSNNDNS--GIVITLPPIASNDPILAWVWSSISSIHMGPLPEKIEAANQLASLAH 177
Query: 186 DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTI 245
DNDRNK+IIVEEGGVPP L+LL ET S +AQ AAAT+LY+++ND++RV I+ E GVP I
Sbjct: 178 DNDRNKQIIVEEGGVPPFLRLLSETTSPDAQIAAATSLYHLSNDEDRVTTILDEAGVPII 237
Query: 246 VNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSG 305
V VL+DS M+VQ VA LVARMAE +++AQDDFAREN +RPLVTLLSFETF+DD ++ G
Sbjct: 238 VKVLADSPMRVQTWVARLVARMAERNSIAQDDFARENAMRPLVTLLSFETFMDDQKSFVG 297
Query: 306 KQSIHTIVQINKEMEKNSFVGSKN---YRPYLYSEYCSSRSG-------QNRKDRENEKP 355
KQSIH++VQIN+EMEK S + S N YRPY+ S S +R++RENE P
Sbjct: 298 KQSIHSLVQINQEMEKKSLIDSNNNHHYRPYVSSFSSFHSSEGSSRGGSNHRRERENESP 357
Query: 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415
EVK KLKI+CAEALWMLAR SV NS+RI+ETKGLLCLAKLVEK +GELQFNCLMTI EIT
Sbjct: 358 EVKHKLKISCAEALWMLARDSVLNSKRITETKGLLCLAKLVEKGEGELQFNCLMTIQEIT 417
Query: 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475
AAAESNADLRRAAFK NSPAAKAVVDQLLRVI +LDSP LQ+PAI+SIGSLARTFPARET
Sbjct: 418 AAAESNADLRRAAFKANSPAAKAVVDQLLRVIKELDSPELQVPAIRSIGSLARTFPARET 477
Query: 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535
RV+GPLVAHLS+R+QEVA EAAI L KFA+PENFLC H+KAIIEF+ VPPLMRLLRGN+
Sbjct: 478 RVVGPLVAHLSNRSQEVAAEAAITLGKFATPENFLCVAHAKAIIEFSGVPPLMRLLRGNE 537
Query: 536 RTQLHGL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLY 581
QLHGL ALEQARVL ALEG D+ ++AQ P+LKELVS+A+YH+NLY
Sbjct: 538 PAQLHGLILLCYLALHAGNSEALEQARVLNALEGVDQKMLAQFPDLKELVSKAIYHINLY 597
Query: 582 HAGVHPQRQAYAP 594
HAG H QR Y P
Sbjct: 598 HAGTHSQRLLYVP 610
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497349|ref|XP_003517523.1| PREDICTED: uncharacterized protein LOC100779659 [Glycine max] | Back alignment and taxonomy information |
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Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/619 (68%), Positives = 499/619 (80%), Gaps = 33/619 (5%)
Query: 1 MSSSIEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTT 60
M+SS +EKR+EDELSYPI++AERVRSAVDES+SFK EC+EVGK VDR+ QMLRT+VRF T
Sbjct: 1 MASSEQEKRVEDELSYPIMVAERVRSAVDESDSFKLECSEVGKHVDRILQMLRTLVRFAT 60
Query: 61 PAQS------LYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLN 114
+ LY+RPIRRV +E +KNLER+L LV KCKR+S+LRRVV+IV AADF K+L
Sbjct: 61 ATATSAATPPLYDRPIRRVAAETAKNLERALALVSKCKRRSILRRVVSIVGAADFLKVLT 120
Query: 115 LLDASVGDMRWLLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRI 174
LDAS GDM+WLLSI D GG GGIV++LPPIASNDP+LSWVWS+IA+IQMGQL+DRI
Sbjct: 121 HLDASGGDMKWLLSILD---GG--GGIVVSLPPIASNDPILSWVWSFIASIQMGQLNDRI 175
Query: 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234
EAA ELASLA+DNDRNKKIIVEE GVPPLLKL KE S AQ AAA AL ++AND +RVR
Sbjct: 176 EAANELASLAQDNDRNKKIIVEECGVPPLLKLFKEGTSPLAQIAAANALCHLANDLDRVR 235
Query: 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294
VIVSE GVP +V +LSDS M+VQ A+LVARMA+HD +AQ+DFAREN IRPLVTLLSF+
Sbjct: 236 VIVSEHGVPAVVQILSDSPMRVQTLAANLVARMAKHDPVAQEDFARENAIRPLVTLLSFD 295
Query: 295 TFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSK---NY-RPYLYSEYCSSRSGQNRKDR 350
TFVDDP + GKQSIH+IVQINKE+ K G K +Y YL+ E SSR G +RK+R
Sbjct: 296 TFVDDPLGHLGKQSIHSIVQINKELGKGGQGGWKFTSSYSNSYLFME-GSSRGGNHRKER 354
Query: 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMT 410
NE P VK++LK++CAEALWMLARGSV NSR+I+ETKG+LCLAK+VE EQGELQ NCLMT
Sbjct: 355 GNEDPAVKLQLKVSCAEALWMLARGSVTNSRKITETKGMLCLAKIVEMEQGELQLNCLMT 414
Query: 411 IMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470
IMEITAAAESNADLRRAAFKTNSP AKAVV+QLLR+I ++DSP LQIPA+K+IGSLARTF
Sbjct: 415 IMEITAAAESNADLRRAAFKTNSPPAKAVVEQLLRIIKEVDSPALQIPAMKAIGSLARTF 474
Query: 471 PARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRL 530
P RETRVI PLV + +RN EVA EA AL KFASP+N+L EHSK IIEFN +P LMRL
Sbjct: 475 PVRETRVIEPLVTQMGNRNTEVADEAVAALTKFASPDNYLHIEHSKTIIEFNGIPALMRL 534
Query: 531 LRGNDRTQLH-GL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEAL 575
LR N+ TQ+H GL +LEQARVLT LEGADRTV+ P +KELVS A+
Sbjct: 535 LRSNEVTQMHRGLTLLCYLALHAGNSESLEQARVLTVLEGADRTVLP--PHIKELVSRAI 592
Query: 576 YHLNLYHAGVHPQRQAYAP 594
HLNLYHAG++ QR +Y P
Sbjct: 593 IHLNLYHAGMNSQRISYLP 611
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574007|ref|XP_002527921.1| conserved hypothetical protein [Ricinus communis] gi|223532696|gb|EEF34478.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/616 (67%), Positives = 493/616 (80%), Gaps = 29/616 (4%)
Query: 5 IEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQS 64
++EKRIEDEL+YP LLA+R+R AV E++SFK EC +G + LS LR +RFT +QS
Sbjct: 1 MDEKRIEDELTYPFLLADRLRLAVQEADSFKQECTNIGNYANLLSDKLRLFLRFTGSSQS 60
Query: 65 LYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMR 124
Y+RP+RR+VS+V+KNL+R+LTLV+KCKR+SVLRRVVTI+S+ DF+K+ LL+AS GD++
Sbjct: 61 FYDRPVRRIVSDVAKNLDRALTLVKKCKRRSVLRRVVTIISSTDFKKVQTLLEASAGDVK 120
Query: 125 WLLSIFDSENGGASGG--IVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELAS 182
WL SI G I LTLPPIASNDP+L+WVWS IA+I + L+D+IEAA +LA
Sbjct: 121 WLESILGFGGGSGGDDFGIDLTLPPIASNDPILAWVWSSIASIHVRPLNDKIEAANQLAQ 180
Query: 183 LAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGV 242
LA+DNDRNK+IIVEE GV PLLKLLKE+AS EAQ AA TAL +AND+ERVR IV+E GV
Sbjct: 181 LAQDNDRNKQIIVEEEGVSPLLKLLKESASPEAQFAAGTALLYLANDEERVRAIVNEQGV 240
Query: 243 PTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRA 302
IV VL+DS M+VQ +A+LVARMAEHD +AQDDFARENVIRPLVTLLSFETF DD
Sbjct: 241 SVIVKVLADSPMRVQSLMANLVARMAEHDPIAQDDFARENVIRPLVTLLSFETFSDD--- 297
Query: 303 NSGKQSIHTIVQINKEMEKNSFVGSKN--YRPYL--YSEYCS------SRSGQNRKDREN 352
GKQSIH+IVQINKE+EK GSKN ++PY+ +S + S S NRK+REN
Sbjct: 298 QLGKQSIHSIVQINKEIEKYPINGSKNNHFKPYMNSFSSFHSEGGSSRGGSNNNRKEREN 357
Query: 353 EKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIM 412
EKPEVK+KLKI CAEALWMLA GSV NS+RI+ETKGLLCLAK+VEKE+GELQ+NCLMTI
Sbjct: 358 EKPEVKLKLKITCAEALWMLASGSVLNSKRITETKGLLCLAKIVEKEEGELQYNCLMTIK 417
Query: 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472
EITAAAES+ADLRRAAFKTNSPAAKAV+DQLLRVI +LDSP LQIPAIK+IGSLARTFPA
Sbjct: 418 EITAAAESDADLRRAAFKTNSPAAKAVIDQLLRVIRELDSPKLQIPAIKAIGSLARTFPA 477
Query: 473 RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532
RETRVIGPLVA LS RNQ+VA EAAIAL KFA PENFLC HSKAI+EFN +PPLM+LLR
Sbjct: 478 RETRVIGPLVAKLSSRNQDVAIEAAIALGKFACPENFLCDAHSKAIVEFNGLPPLMKLLR 537
Query: 533 GNDRTQLHGL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHL 578
GN+R Q HGL ALEQ+RVLTALEG DRTV Q P+L+ELVS+A+YH+
Sbjct: 538 GNERAQSHGLILLCYLVLHAGNNEALEQSRVLTALEGVDRTVFTQFPDLRELVSKAIYHI 597
Query: 579 NLYHAGVHPQRQAYAP 594
NLYH H QR +Y P
Sbjct: 598 NLYHTSAHSQRFSYVP 613
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450430|ref|XP_004142965.1| PREDICTED: uncharacterized protein LOC101207247 [Cucumis sativus] gi|449500301|ref|XP_004161060.1| PREDICTED: uncharacterized LOC101207247 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/600 (67%), Positives = 476/600 (79%), Gaps = 28/600 (4%)
Query: 6 EEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSL 65
++KRIED+LS+PILL++R+RSAV E+ SFK ECAEV KQVDRL+QMLR VRF T ++
Sbjct: 4 DDKRIEDQLSHPILLSDRLRSAVLEAHSFKTECAEVAKQVDRLAQMLRIAVRFATATPAV 63
Query: 66 YERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRW 125
YERPIRRVV+EVSKN ER+LTLVRKCK QS LRRV+ I S DFRKL NLLDASVGDM+W
Sbjct: 64 YERPIRRVVAEVSKNFERALTLVRKCKHQSALRRVMAITSVTDFRKLFNLLDASVGDMKW 123
Query: 126 LLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAK 185
LL+IF+ NGG GIVL+LPPIASNDP+++WVWS IA+IQMGQL DRIE ELASLA
Sbjct: 124 LLTIFEC-NGG---GIVLSLPPIASNDPIIAWVWSSIASIQMGQLPDRIEGTNELASLAA 179
Query: 186 DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTI 245
DN+RNK IIVEEGG+PPLLKLLKE S EA+ AA ALY +AND RV IV E GVP I
Sbjct: 180 DNERNKNIIVEEGGIPPLLKLLKEGPSPEAKIAAIKALYTLANDTNRVSTIVQEHGVPII 239
Query: 246 VNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLV-TLLSFETFVDDPRANS 304
V L++S M VQ Q ASLVARM HD LAQ+DFARENVIRPLV TLLSFETF+D+
Sbjct: 240 VQALANSPMLVQTQAASLVARMTMHDPLAQEDFARENVIRPLVVTLLSFETFMDE----M 295
Query: 305 GKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSS-----RSGQNRKDRENEKPEVKI 359
+QSIH+IVQIN+ +EK + + P + S+ R+G +RK+R NE+PEVK
Sbjct: 296 CRQSIHSIVQINRNLEKKTLDKTMEQNPNAKTNALSNMEGGIRAGNSRKERGNERPEVKH 355
Query: 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAE 419
KLKI CAEALW+LA+GSV+NSRRI ETKGLLC+AK+VEKE+GELQ NCLM I EITAAAE
Sbjct: 356 KLKITCAEALWLLAKGSVSNSRRICETKGLLCMAKMVEKEEGELQMNCLMCITEITAAAE 415
Query: 420 SNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIG 479
SNADLRRAAFKTNSPAAKAVVDQ+LR+INDLD P LQIPAI+SIGSLARTFPARETRVIG
Sbjct: 416 SNADLRRAAFKTNSPAAKAVVDQMLRLINDLDDPALQIPAIRSIGSLARTFPARETRVIG 475
Query: 480 PLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQL 539
PLV L R+ +VA EAAI+L KF PENFLC EHS+ +IEFN VP +++LLR N+++Q+
Sbjct: 476 PLVVKLGSRHVDVAAEAAISLGKFVCPENFLCMEHSRTVIEFNGVPLVLKLLRENEKSQM 535
Query: 540 HGLAL--------------EQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHAGV 585
+G+ L +QARVLT LEGADRT++ HPELKELV +A+ HLNLYHAG+
Sbjct: 536 YGVILLCYLALHAGSSEIVDQARVLTVLEGADRTMITLHPELKELVGKAISHLNLYHAGM 595
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502041|ref|XP_003519830.1| PREDICTED: uncharacterized protein LOC100804310 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/622 (68%), Positives = 499/622 (80%), Gaps = 31/622 (4%)
Query: 1 MSSSIEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTT 60
M+SS EEK +EDELSYPI++AERVRSAVDES+SFK EC+EVGK VDRL QMLRT+VRF T
Sbjct: 1 MASSEEEKLVEDELSYPIMVAERVRSAVDESDSFKLECSEVGKHVDRLLQMLRTLVRFAT 60
Query: 61 P------AQSLYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLN 114
A LYERPIRRV +E SKNL+R+L LVRKCKR+S+LRRVV+IVSAADFRK+L
Sbjct: 61 ATSTSSVAPPLYERPIRRVAAEASKNLDRALALVRKCKRRSILRRVVSIVSAADFRKVLT 120
Query: 115 LLDASVGDMRWLLSIFDSENGGASGG---IVLTLPPIASNDPMLSWVWSYIAAIQMGQLS 171
+DAS GDM WLLSI D++ G GG IVL+LPPIASNDP+LSWVWS+IA+IQMGQL+
Sbjct: 121 HIDASTGDMMWLLSILDADGAGDGGGGGGIVLSLPPIASNDPILSWVWSFIASIQMGQLN 180
Query: 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE 231
DRIEAA ELAS A+DN RNKKIIVEE GVPPLLKLLKE S AQ AAAT L ++AND +
Sbjct: 181 DRIEAANELASFAQDNARNKKIIVEECGVPPLLKLLKEGTSPLAQIAAATTLCHLANDLD 240
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
RVRVIVSE GVP +V VLSDS M+VQ A+LVARMA+HD +AQ+DFAREN IRPLVTLL
Sbjct: 241 RVRVIVSEHGVPAVVQVLSDSPMRVQTLAANLVARMAKHDPVAQEDFARENAIRPLVTLL 300
Query: 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSK----NYRPYLYSEYCSSRSGQNR 347
SF+TFVDDP + GKQSIH+IVQINKE+ K G + YL++E+ SSR +R
Sbjct: 301 SFDTFVDDPLGHLGKQSIHSIVQINKELGKGGRGGHQFSSSYSSSYLFTEW-SSRGVNHR 359
Query: 348 KDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNC 407
K+RENE P VK++LK++CAEALWML +GSV NSR+I+ETKG+LCLAK+VE EQGELQ NC
Sbjct: 360 KERENEDPVVKLQLKVSCAEALWMLVQGSVTNSRKITETKGMLCLAKIVEMEQGELQLNC 419
Query: 408 LMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467
LMT+MEITAAAE NADLRRAAFKTNSPAAK+VV+QLLR+I ++DSP LQIPA+K+IGSLA
Sbjct: 420 LMTMMEITAAAEYNADLRRAAFKTNSPAAKSVVEQLLRIIKEVDSPALQIPAMKAIGSLA 479
Query: 468 RTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPL 527
RTFPARETRVI PLV + +RN EVA EA AL KFASP+NFL EHSK I+EF+ +P L
Sbjct: 480 RTFPARETRVIEPLVTQMGNRNAEVADEAVAALAKFASPDNFLHVEHSKTIVEFSGIPAL 539
Query: 528 MRLLRGNDRTQL-HGL--------------ALEQARVLTALEGADRTVVAQHPELKELVS 572
MRLLR N+ Q+ HGL +LEQARVL LEGADRTV+ QH +KELVS
Sbjct: 540 MRLLRSNEVAQMHHGLTLLCYLALHAGNSESLEQARVLIVLEGADRTVLPQH--IKELVS 597
Query: 573 EALYHLNLYHAGVHPQRQAYAP 594
A+ HLNLYHAG++ QR +Y P
Sbjct: 598 MAIIHLNLYHAGMNSQRISYFP 619
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485695|ref|XP_003613135.1| hypothetical protein MTR_5g033190 [Medicago truncatula] gi|355514470|gb|AES96093.1| hypothetical protein MTR_5g033190 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/619 (66%), Positives = 495/619 (79%), Gaps = 36/619 (5%)
Query: 1 MSSSIEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFT- 59
MSSS E KR+E+ELSYPIL+AER+RSA +E++SFK EC+EV K V+RL QMLRT+VRF
Sbjct: 1 MSSSPEAKRLEEELSYPILVAERIRSATEETDSFKLECSEVWKHVERLLQMLRTLVRFAA 60
Query: 60 TPAQSLYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDAS 119
T LYERP+RRV +E +KNLER+LTL+RKCKR+S+L RVVTIV+AADFRK+L LDAS
Sbjct: 61 TAPPPLYERPVRRVAAEAAKNLERALTLIRKCKRRSILHRVVTIVTAADFRKVLVYLDAS 120
Query: 120 VGDMRWLLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIE 179
VGDM+WLLSI D + G GGI L+LPPIASNDP+LSWVWS+IA+IQMGQL+D+IEA E
Sbjct: 121 VGDMKWLLSILDVDGSGGGGGINLSLPPIASNDPILSWVWSFIASIQMGQLNDKIEATNE 180
Query: 180 LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239
LASLA+DNDRNKKIIVEEGGVPPLLKLLKE +S AQ AAAT L +AND ER+RVIV+E
Sbjct: 181 LASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLCYLANDLERIRVIVNE 240
Query: 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDD 299
+GVP +V VL+DS ++VQ A+LVARMA+HD +AQ+DFAREN IRPLVTLLSF+T VD+
Sbjct: 241 VGVPAVVQVLADSPIRVQTLAANLVARMAKHDPVAQEDFARENAIRPLVTLLSFDTAVDE 300
Query: 300 PRANSGKQSIHTIVQINKEMEKNSF------VGSKNY-----RPYLYSEYCSSRSGQNRK 348
+ SIH+I Q+NKE+ K + GS+ + Y Y+E SSR G RK
Sbjct: 301 ------QTSIHSIFQVNKELGKKTTDRSGTGSGSRQFANSYSSTYYYTE-GSSRGGNYRK 353
Query: 349 DRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCL 408
+RENE P VK++LKI+CAEALWMLA GSV+NSR+I+ETKG+LCLAK+VEKEQGELQ NCL
Sbjct: 354 ERENEDPAVKLQLKISCAEALWMLAAGSVSNSRKITETKGMLCLAKIVEKEQGELQRNCL 413
Query: 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468
MTIMEITAAAESNADLRR AFKTNSP AKAVV+QLLR++ ++DSP +QIPAIKSIGSLAR
Sbjct: 414 MTIMEITAAAESNADLRRGAFKTNSPPAKAVVEQLLRILKEVDSPLMQIPAIKSIGSLAR 473
Query: 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLM 528
TFPARETRVI PLVA LS+R+ VA EAA+AL KFASP+NFL EHSK IIEF+AVP +M
Sbjct: 474 TFPARETRVIEPLVAQLSNRDINVADEAAVALTKFASPDNFLYVEHSKKIIEFDAVPAVM 533
Query: 529 RLLRGNDRTQLHGL---------------ALEQARVLTALEGADRTVVAQHPELKELVSE 573
+LLR N+ Q+H +LEQARVL ALEGADRT++ QH +++LVS+
Sbjct: 534 KLLRSNEVNQMHHALTLLCYLALHAGSSESLEQARVLLALEGADRTILPQH--IRDLVSK 591
Query: 574 ALYHLNLYHAGVHPQRQAY 592
A+ HLNLYHAG H Q Y
Sbjct: 592 AIGHLNLYHAGSHSQPLVY 610
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231578|ref|NP_189292.1| armadillo repeat only 4 protein [Arabidopsis thaliana] gi|1402879|emb|CAA66810.1| hypothetical protein [Arabidopsis thaliana] gi|1495247|emb|CAA66220.1| orf 05 [Arabidopsis thaliana] gi|9293939|dbj|BAB01842.1| unnamed protein product [Arabidopsis thaliana] gi|209414538|gb|ACI46509.1| At3g26600 [Arabidopsis thaliana] gi|332643663|gb|AEE77184.1| armadillo repeat only 4 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/612 (63%), Positives = 486/612 (79%), Gaps = 28/612 (4%)
Query: 6 EEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRF-TTPAQS 64
EE RI DELS +L AER+R AVDE+ESFK EC EVGKQVDRL+QMLRT+VRF ++ +Q
Sbjct: 4 EESRIGDELSILVLTAERLRVAVDEAESFKTECGEVGKQVDRLAQMLRTLVRFVSSSSQQ 63
Query: 65 LYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMR 124
+Y+RPIRRV+ +V KNLER LVRKC+R +++RRV TI++AADFRK++NLL++S GD++
Sbjct: 64 VYDRPIRRVIVDVKKNLERGFALVRKCRRHNIIRRVCTIINAADFRKVINLLESSNGDVK 123
Query: 125 WLLSIFDSENGGASGG-IVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASL 183
W+LS+FDS+ G+ GG IV++LPPIA+NDP+L WVWS +A+IQMG+L D+I+AA +L SL
Sbjct: 124 WILSVFDSDGDGSFGGGIVISLPPIATNDPILPWVWSLVASIQMGKLVDKIDAANQLGSL 183
Query: 184 AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVP 243
A DNDRNKKIIV+EGGV PLL+LLKE++S+E Q AAATAL +A D+++VR IV+ELGVP
Sbjct: 184 AGDNDRNKKIIVDEGGVSPLLRLLKESSSAEGQIAAATALGLLACDEDKVRSIVNELGVP 243
Query: 244 TIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRAN 303
IV VL DS ++VQI+VA+LVARMAEHD +AQD+FAR++VI+PLVTLLS + FVDD
Sbjct: 244 IIVQVLGDSSVRVQIKVATLVARMAEHDPVAQDEFARQSVIKPLVTLLSLDVFVDDIHL- 302
Query: 304 SGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEY--------CSSRSGQNRKDRENEKP 355
S SIH++VQ+NKE+EK+ SK YRP S+ SR+G +K+R+NE P
Sbjct: 303 SKHNSIHSLVQMNKEVEKDP--SSKLYRPLKSSKSNVYRDIGGSGSRTGNFKKERDNENP 360
Query: 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415
EVK +LK+ CAEALWMLARG+VANSRRI+ETKGLL LAK+VEKE GELQ+NCLMT+MEIT
Sbjct: 361 EVKHELKVNCAEALWMLARGNVANSRRITETKGLLSLAKIVEKEVGELQYNCLMTLMEIT 420
Query: 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475
AAAES+ADLRRAAFKTNSPAAKAV+DQ+L +I D+DSP L+IPAI+SIGSLARTFPARET
Sbjct: 421 AAAESSADLRRAAFKTNSPAAKAVIDQMLWIIKDVDSPILKIPAIQSIGSLARTFPARET 480
Query: 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-N 534
R+I PLV L NQEVA A I+LQKF PENFLC EHSK IIE+ A+P LM+L+R
Sbjct: 481 RMIKPLVEKLGSSNQEVAITAVISLQKFVCPENFLCAEHSKNIIEYGAIPLLMKLIRNVE 540
Query: 535 DRTQLHGLA--------------LEQARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580
+ QL LA LEQA+VLT LEGA+R Q+ EL+ELVS+A+Y L+L
Sbjct: 541 QQMQLQCLALLCYLSVNASNHQQLEQAKVLTVLEGAERLAGLQNMELRELVSKAIYQLSL 600
Query: 581 YHAGVHPQRQAY 592
Y+AG H Q +Y
Sbjct: 601 YNAGSHSQMLSY 612
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814884|ref|XP_002875325.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297321163|gb|EFH51584.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/612 (62%), Positives = 486/612 (79%), Gaps = 28/612 (4%)
Query: 6 EEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRF-TTPAQS 64
EE RI DELS +L AER+R AVDE+ESFK EC EVGKQVDRL+QMLRT+ RF ++ +Q
Sbjct: 3 EESRIGDELSILVLTAERLRVAVDEAESFKTECGEVGKQVDRLAQMLRTLARFVSSSSQQ 62
Query: 65 LYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMR 124
+Y+RPIRRV+ +V KNLER +LVRKC+R +++RRV TI++AADFRK++NLL++S GD++
Sbjct: 63 VYDRPIRRVIVDVKKNLERGFSLVRKCRRHNIIRRVCTIINAADFRKVINLLESSNGDVK 122
Query: 125 WLLSIFDSENGGASGG-IVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASL 183
W+LS+FDS+ G+ GG IV++LPPIA+NDP+L WVWS +A+IQMG+L D+I+AA +L SL
Sbjct: 123 WILSVFDSDGDGSFGGGIVISLPPIATNDPILPWVWSLVASIQMGKLVDKIDAANQLGSL 182
Query: 184 AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVP 243
A DNDRNKKIIV+EGGV PLL+LLKE++S+E Q AAATAL +A D+++VR IV+ELGVP
Sbjct: 183 AGDNDRNKKIIVDEGGVAPLLRLLKESSSAEGQIAAATALGLLACDEDKVRSIVNELGVP 242
Query: 244 TIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRAN 303
IV VL D+ ++VQI+VA+LVARMAEHD +AQD+FAR++VI+PLVTLLS + F DD
Sbjct: 243 IIVQVLGDASVRVQIKVATLVARMAEHDPVAQDEFARQSVIKPLVTLLSLDVFFDDIHL- 301
Query: 304 SGKQSIHTIVQINKEMEKNSFVGSKNYRPY------LYSEY--CSSRSGQNRKDRENEKP 355
S SIH++VQ+NKE+EK+ SK YRP +Y E SR+G +K+R+NE P
Sbjct: 302 SKHNSIHSLVQMNKEVEKDP--SSKFYRPLKSSKSNVYREIGGSGSRTGNFKKERDNENP 359
Query: 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415
EVK +LK+ CAEALWMLARG+VANSRRI+ETKGLL LAK+VEKE GELQ+NCLMT+MEIT
Sbjct: 360 EVKHELKVNCAEALWMLARGNVANSRRITETKGLLSLAKIVEKEVGELQYNCLMTLMEIT 419
Query: 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475
AAAESNADLRRAAFKTNSPAAKAV+DQ+L +I ++D+P L+IPAI+SIGSLARTFPARET
Sbjct: 420 AAAESNADLRRAAFKTNSPAAKAVIDQMLWIIKEVDNPILKIPAIQSIGSLARTFPARET 479
Query: 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-N 534
R+I PLV L NQEVA A I+LQKF PENFLC EHSK IIE+ A+P LM+L+R
Sbjct: 480 RMIQPLVEKLGSSNQEVAITAVISLQKFVCPENFLCAEHSKNIIEYGAIPLLMKLIRNFE 539
Query: 535 DRTQLHGLA--------------LEQARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580
+ QL LA LEQA+VLT LEGA+R Q+ EL+ELVS+A+Y L+L
Sbjct: 540 QQMQLQCLALLCYLSINASNHEQLEQAKVLTVLEGAERLAGLQNMELRELVSKAIYQLSL 599
Query: 581 YHAGVHPQRQAY 592
Y+AG H Q +Y
Sbjct: 600 YNAGSHSQMLSY 611
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135917|ref|XP_002322193.1| predicted protein [Populus trichocarpa] gi|222869189|gb|EEF06320.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/609 (61%), Positives = 472/609 (77%), Gaps = 28/609 (4%)
Query: 1 MSSSIEEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTT 60
M I+E I ELS PILLA+RV + E+ES + +C+++ KQVDRLSQMLR+ VR
Sbjct: 1 MGDPIDE--ISKELSLPILLADRVIKSAQEAESLRQDCSDLAKQVDRLSQMLRSAVRLAV 58
Query: 61 PAQSLYERPIRRVVSEVSKNLERSLTLVRKCKRQS-VLRRVVTIVSAADFRKLLNLLDAS 119
SLY+RP+RR+ S++++NL+R+LTLVRKCK+ S VLR+V +I + ADFRK+ NLL++S
Sbjct: 59 SIPSLYDRPLRRIASDITRNLDRALTLVRKCKKHSGVLRQVFSITTTADFRKVSNLLESS 118
Query: 120 VGDMRWLLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIE 179
+GDM+WLLS+F+S+ GG L+LPPIASNDP+L+WVWS I+A+QMGQ+ DR++AA +
Sbjct: 119 IGDMKWLLSVFESD-----GGAHLSLPPIASNDPILAWVWSSISAVQMGQVKDRVDAANQ 173
Query: 180 LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239
LASLA+DNDRNKK+IVEEGG+ PLLKLLKE AS+EAQ AAATAL NIA+D+ERVR+IV
Sbjct: 174 LASLARDNDRNKKMIVEEGGILPLLKLLKEGASAEAQIAAATALSNIASDRERVRLIVDA 233
Query: 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDD 299
LG+ IV VL DS KVQI VA+LVARMA D AQD+F R NV RPLV+LLS ++
Sbjct: 234 LGISMIVGVLGDSQTKVQISVANLVARMAALDDYAQDEFMRLNVTRPLVSLLSSHLDLEI 293
Query: 300 PRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI 359
N K SI +++++NK++ KN + S+ S + K+RE E PE+++
Sbjct: 294 ASNNPVKTSIPSLIEMNKKL------AYKNIKANYNSDSSSHGGSHSNKEREMETPEMQL 347
Query: 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAE 419
KLK++CAEALW L+RGSV+NSR+I+ETKGLLCLAK+VE+E+GELQFNCLMTIMEITA AE
Sbjct: 348 KLKVSCAEALWKLSRGSVSNSRKITETKGLLCLAKIVEREKGELQFNCLMTIMEITAVAE 407
Query: 420 SNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIG 479
SNADLRRAAFKTN PAAKAV+DQLLRVI + P LQIPAI+SIG LARTFPARETR++G
Sbjct: 408 SNADLRRAAFKTNLPAAKAVLDQLLRVIQEESDPQLQIPAIRSIGCLARTFPARETRIMG 467
Query: 480 PLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQL 539
PLV+HL +RN EVATEAAIAL KFASPENF C+EHSKAIIEF+ VPPLM+LLR D++QL
Sbjct: 468 PLVSHLGNRNVEVATEAAIALGKFASPENFNCSEHSKAIIEFDGVPPLMKLLRSGDQSQL 527
Query: 540 HGL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHAGV 585
GL ALEQAR L ALEG R+V+AQHPELK+L ++A++HL LY AG
Sbjct: 528 QGLVLLCYLALNAGNSKALEQARALNALEGTARSVLAQHPELKDLFAKAIHHLTLYQAGA 587
Query: 586 HPQRQAYAP 594
RQ+ AP
Sbjct: 588 PLNRQSLAP 596
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470581|ref|XP_002272555.1| PREDICTED: uncharacterized protein LOC100264922 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/605 (60%), Positives = 468/605 (77%), Gaps = 21/605 (3%)
Query: 7 EKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLY 66
EK IE++LS I L ERVR+A ++ S+K EC+EV KQ R+ M+R+V+R + LY
Sbjct: 5 EKLIEEQLSGAIQLVERVRAAERDAHSYKFECSEVWKQAGRIGAMVRSVIRIVSSTPFLY 64
Query: 67 ERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRWL 126
ERPIR VV+ V LER+L LVRKCK +SVLRRVVTI++AADFRK+ +LL+ASVGDM+WL
Sbjct: 65 ERPIRCVVAAVCSTLERALALVRKCKHRSVLRRVVTIINAADFRKVFSLLEASVGDMKWL 124
Query: 127 LSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKD 186
L++ D++ G GGI +++ PIASNDP+LSWVWSYIA++QMGQL RIEAA L S+A+D
Sbjct: 125 LNVVDADGGNGVGGIGVSIAPIASNDPILSWVWSYIASVQMGQLPYRIEAANYLVSIAQD 184
Query: 187 NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIV 246
NDRNK+II +EGGVPPLLKL+KE+AS +AQ AA TAL ++A+ QERVR+I ELGVP IV
Sbjct: 185 NDRNKRIIAQEGGVPPLLKLMKESASPDAQIAATTALLHLADVQERVRLIADELGVPIIV 244
Query: 247 NVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGK 306
+VL +S M+VQ VA+LVARMAE D +Q++FARE+V+RPLVTLLSFE +++ N K
Sbjct: 245 HVLRNSPMRVQTAVANLVARMAELDPFSQEEFAREHVVRPLVTLLSFEIVMNE---NDPK 301
Query: 307 QSIHTIVQINKEMEKNSFVGSK---NYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKI 363
SIH++VQINKE+ ++S V +K N +Y E S R G++ KDRENEKPEVKI LK
Sbjct: 302 MSIHSLVQINKEVGESSTVNAKLHLNSCSSMYGE-GSGRGGRHNKDRENEKPEVKINLKT 360
Query: 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNAD 423
+CAEAL MLARG+V+NS+RI+ETKGLLCLAKL+EKE+G+LQFNCLMTIMEITA AE NA+
Sbjct: 361 SCAEALRMLARGNVSNSKRITETKGLLCLAKLIEKEKGDLQFNCLMTIMEITAIAEYNAE 420
Query: 424 LRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVA 483
LRRA FK NSPAAKAVV+QL+R+I ++DS LQIPAI+++GSLARTF ARET VI LVA
Sbjct: 421 LRRAVFKINSPAAKAVVNQLVRLIEEVDSTLLQIPAIRALGSLARTFSARETHVIRALVA 480
Query: 484 HLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGL- 542
LSH + +VA EAAIAL KFA EN+L EH+ +II+F V PLM+L+R N++T+LHGL
Sbjct: 481 RLSHWDHDVAMEAAIALGKFACQENYLNAEHADSIIKFGGVTPLMKLMRVNEQTRLHGLI 540
Query: 543 -------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHAGVHPQR 589
+LEQARVLT LEG ++AQHP+L+ELV +A + L +YH GV +
Sbjct: 541 LLCHLAIHSGNSESLEQARVLTILEGVQHPMMAQHPDLRELVLQATFLLRMYHNGVLGEG 600
Query: 590 QAYAP 594
Q Y P
Sbjct: 601 QPYVP 605
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 594 | ||||||
| TAIR|locus:2088832 | 615 | ARO4 "AT3G26600" [Arabidopsis | 0.983 | 0.949 | 0.620 | 6.2e-188 | |
| TAIR|locus:2156932 | 651 | ARO2 "armadillo repeat only 2" | 0.510 | 0.465 | 0.391 | 5.4e-96 | |
| TAIR|locus:2116850 | 664 | ARO1 "AT4G34940" [Arabidopsis | 0.501 | 0.448 | 0.391 | 9.9e-95 | |
| TAIR|locus:2135149 | 670 | ARO3 "armadillo repeat only 3" | 0.503 | 0.446 | 0.382 | 5.6e-90 | |
| UNIPROTKB|E1BVP7 | 531 | KPNA7 "Importin subunit alpha" | 0.207 | 0.231 | 0.277 | 1.8e-05 | |
| POMBASE|SPBC1604.08c | 539 | imp1 "importin alpha" [Schizos | 0.138 | 0.152 | 0.326 | 7.7e-05 | |
| UNIPROTKB|C1JZ66 | 522 | KPNA7 "Importin subunit alpha- | 0.185 | 0.210 | 0.270 | 0.00017 | |
| CGD|CAL0000730 | 543 | orf19.5682 [Candida albicans ( | 0.215 | 0.235 | 0.207 | 0.00018 | |
| TAIR|locus:2179842 | 737 | ABAP1 "ARMADILLO BTB protein 1 | 0.207 | 0.166 | 0.262 | 0.00036 | |
| TAIR|locus:2157358 | 555 | AT5G50900 [Arabidopsis thalian | 0.244 | 0.261 | 0.231 | 0.00044 |
| TAIR|locus:2088832 ARO4 "AT3G26600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1822 (646.4 bits), Expect = 6.2e-188, P = 6.2e-188
Identities = 380/612 (62%), Positives = 475/612 (77%)
Query: 6 EEKRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRF-TTPAQS 64
EE RI DELS +L AER+R AVDE+ESFK EC EVGKQVDRL+QMLRT+VRF ++ +Q
Sbjct: 4 EESRIGDELSILVLTAERLRVAVDEAESFKTECGEVGKQVDRLAQMLRTLVRFVSSSSQQ 63
Query: 65 LYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMR 124
+Y+RPIRRV+ +V KNLER LVRKC+R +++RRV TI++AADFRK++NLL++S GD++
Sbjct: 64 VYDRPIRRVIVDVKKNLERGFALVRKCRRHNIIRRVCTIINAADFRKVINLLESSNGDVK 123
Query: 125 WLLSIFDSENGGA-SGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASL 183
W+LS+FDS+ G+ GGIV++LPPIA+NDP+L WVWS +A+IQMG+L D+I+AA +L SL
Sbjct: 124 WILSVFDSDGDGSFGGGIVISLPPIATNDPILPWVWSLVASIQMGKLVDKIDAANQLGSL 183
Query: 184 AKDNDRNKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIANDQERVRVIVSELGVP 243
A DNDRNKKIIV+EGGV PLL+LLK L +A D+++VR IV+ELGVP
Sbjct: 184 AGDNDRNKKIIVDEGGVSPLLRLLKESSSAEGQIAAATALGLLACDEDKVRSIVNELGVP 243
Query: 244 TIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRAN 303
IV VL DS ++VQI+VA+LVARMAEHD +AQD+FAR++VI+PLVTLLS + FVDD
Sbjct: 244 IIVQVLGDSSVRVQIKVATLVARMAEHDPVAQDEFARQSVIKPLVTLLSLDVFVDDIHL- 302
Query: 304 SGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSE---Y-----CSSRSGQNRKDRENEKP 355
S SIH++VQ+NKE+EK+ SK YRP S+ Y SR+G +K+R+NE P
Sbjct: 303 SKHNSIHSLVQMNKEVEKDP--SSKLYRPLKSSKSNVYRDIGGSGSRTGNFKKERDNENP 360
Query: 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415
EVK +LK+ CAEALWMLARG+VANSRRI+ETKGLL LAK+VEKE GELQ+NCLMT+MEIT
Sbjct: 361 EVKHELKVNCAEALWMLARGNVANSRRITETKGLLSLAKIVEKEVGELQYNCLMTLMEIT 420
Query: 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475
AAAES+ADLRRAAFKTNSPAAKAV+DQ+L +I D+DSP L+IPAI+SIGSLARTFPARET
Sbjct: 421 AAAESSADLRRAAFKTNSPAAKAVIDQMLWIIKDVDSPILKIPAIQSIGSLARTFPARET 480
Query: 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-N 534
R+I PLV L NQEVA A I+LQKF PENFLC EHSK IIE+ A+P LM+L+R
Sbjct: 481 RMIKPLVEKLGSSNQEVAITAVISLQKFVCPENFLCAEHSKNIIEYGAIPLLMKLIRNVE 540
Query: 535 DRTQLHGLAL--------------EQARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580
+ QL LAL EQA+VLT LEGA+R Q+ EL+ELVS+A+Y L+L
Sbjct: 541 QQMQLQCLALLCYLSVNASNHQQLEQAKVLTVLEGAERLAGLQNMELRELVSKAIYQLSL 600
Query: 581 YHAGVHPQRQAY 592
Y+AG H Q +Y
Sbjct: 601 YNAGSHSQMLSY 612
|
|
| TAIR|locus:2156932 ARO2 "armadillo repeat only 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 5.4e-96, Sum P(2) = 5.4e-96
Identities = 123/314 (39%), Positives = 179/314 (57%)
Query: 10 IEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERP 69
++ L+ PI L+++V A DE+ SFK EC E+ + ++L+ +LR R + LYERP
Sbjct: 5 VKQILAKPIQLSDQVVKAADEASSFKQECGELKAKTEKLAGLLRQAAR---ASNDLYERP 61
Query: 70 IRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRWLLSI 129
RR++ + + LE++L+LV KC+ +++RV TI+ AA FRK+ L+ S+GD+ WLL +
Sbjct: 62 TRRIIDDTEQMLEKALSLVLKCRANGLMKRVFTIIPAAAFRKMSGQLENSIGDVSWLLRV 121
Query: 130 F-DSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDND 188
+E+ G +G L LPPIA+N+P+L +W IA + G L DR +AA L SLA+DND
Sbjct: 122 SAPAEDRGDAG--YLGLPPIAANEPILCLIWEQIAILYTGSLEDRSDAAASLVSLARDND 179
Query: 189 RNKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIANDQERVRVIVSELGVPTIVNV 248
R K+I+EEGGV PLLKLLK L + D E V ++ V
Sbjct: 180 RYTKLIIEEGGVVPLLKLLKEGKPEGQENAARA-LGLLGRDPESVEHMIHGGACSVFGKV 238
Query: 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPR----ANS 304
L + MKVQ VA + + + QD FA+ N IR LV L+FET + + N+
Sbjct: 239 LKEGPMKVQAVVAWATSELVSNHPKCQDVFAQHNAIRLLVGHLAFETVQEHSKYAIATNN 298
Query: 305 GKQSIHTIVQINKE 318
SIH V + KE
Sbjct: 299 KATSIHHAVALAKE 312
|
|
| TAIR|locus:2116850 ARO1 "AT4G34940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 121/309 (39%), Positives = 177/309 (57%)
Query: 10 IEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERP 69
++ L PI LA+++ A DE+ SF+ EC EV + ++L+ +LR R + LYERP
Sbjct: 5 VKQILVRPIQLADQITKASDEAYSFRQECLEVKAKTEKLAGLLRQAAR---ASNDLYERP 61
Query: 70 IRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRWLLSI 129
RR++ + + L ++L LV KC+ +++RV TI+ AA FRK+ L+ S+GD+ WLL +
Sbjct: 62 TRRIIDDTEQVLFKALALVEKCRATGLMKRVFTIIPAAAFRKITMQLENSIGDVSWLLRV 121
Query: 130 FDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDR 189
S +G L LPPIA+N+P+L +W +A + G L DR +AA L SLA+DNDR
Sbjct: 122 --SASGDDRDDEYLGLPPIAANEPILCLIWEQVAILFTGSLDDRSDAAASLVSLARDNDR 179
Query: 190 NKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIANDQERVRVIVSELGVPTIVNVL 249
++I+EEGGVP LLKL K + + D E V IV+ +L
Sbjct: 180 YGRLIIEEGGVPSLLKLAKEGKMEGQENAARA-IGLLGRDPESVEQIVNAGVCQVFAKIL 238
Query: 250 SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRAN--SGKQ 307
+ MKVQ VA V+ +A + QD FA+ N+IR LV+ L+FET + + S KQ
Sbjct: 239 KEGHMKVQTVVAWAVSELASNHPKCQDHFAQNNIIRFLVSHLAFETVQEHSKYAIVSNKQ 298
Query: 308 ---SIHTIV 313
SIHT+V
Sbjct: 299 TLSSIHTVV 307
|
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| TAIR|locus:2135149 ARO3 "armadillo repeat only 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 119/311 (38%), Positives = 182/311 (58%)
Query: 14 LSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRV 73
LS PI LA++V A DE+ K ECA++ + ++L+ +LR R ++ LYERP RR+
Sbjct: 9 LSRPIQLADQVVKAGDEATINKQECADIKSKTEKLAALLRQAARASS---DLYERPTRRI 65
Query: 74 VSEVSKNLERSLTLVRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRWLLSIFD-S 132
+ + LE++LT+V++C+ + R+ I+ AA FRK+++ L+ SVGD+ WLL + +
Sbjct: 66 LDDTENVLEKALTMVQRCRDDGYIMRLFNIIPAAAFRKMISQLENSVGDVSWLLRVSTPA 125
Query: 133 ENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKK 192
N G L LPPIA+N+P+L +W IA + G D+ +AA LASLA+DNDR K
Sbjct: 126 GNDDDEGFGYLGLPPIAANEPILCLIWEQIAVLMTGSPEDKSDAAASLASLARDNDRYVK 185
Query: 193 IIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIANDQERVRVIVSELGVPTIVN-VLSD 251
+IVEEGGV PLLKL+K + + D E V ++ +LGV ++++ +L +
Sbjct: 186 LIVEEGGVNPLLKLVKEGKIDGQENAART-IGLLGRDPESVEHMI-QLGVCSVLSSILKE 243
Query: 252 SIMKVQIQVASLVARMAE-HDALAQDDFARENVIRPLVTLLSFETFVDDPR----ANSGK 306
MKVQ VA V+ + + A Q+ FA+ NVIR LV+ L+FET + + A
Sbjct: 244 GSMKVQAVVAWAVSELVSGNHAKCQELFAQNNVIRLLVSHLAFETVQEHSKYAVVAGRAT 303
Query: 307 QSIHTIVQINK 317
H +V +K
Sbjct: 304 SMHHAVVMASK 314
|
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| UNIPROTKB|E1BVP7 KPNA7 "Importin subunit alpha" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 35/126 (27%), Positives = 56/126 (44%)
Query: 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIAND-QERV 233
+AA + S KD + I+E G +P L++ L L NIA+ E
Sbjct: 93 QAARRILSRQKDPPLTQ--IIELGIIPRLVEFLSRTDSAALQFEAAWALTNIASGTSEHT 150
Query: 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293
R +V +P +++LS M + Q + +A L +D NVI PL+ L+S
Sbjct: 151 RAVVEGGAIPAFISLLSSPHMHISEQAVWALGNIAGDGPLYRDALINCNVIPPLLALVSP 210
Query: 294 ETFVDD 299
T V++
Sbjct: 211 VTPVNN 216
|
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| POMBASE|SPBC1604.08c imp1 "importin alpha" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 102 (41.0 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 445 RVINDLDSPT--LQIPAIKSIGSLARTFPARETRVI---GPLVAH---LSHRNQEVATEA 496
R++ L SP+ +Q PA++S+G++ A +T++I G L A LSH+ + + EA
Sbjct: 294 RLVELLSSPSVNIQTPALRSVGNIVTGTDA-QTQIIIDCGALNAFPSLLSHQKENIRKEA 352
Query: 497 AIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLL 531
+ + T+ +AIIE N +PPL+ LL
Sbjct: 353 CWTISNITAGN----TQQIQAIIESNLIPPLVHLL 383
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| UNIPROTKB|C1JZ66 KPNA7 "Importin subunit alpha-8" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 88 (36.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 30/111 (27%), Positives = 51/111 (45%)
Query: 183 LAKDNDRNKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIAND-QERVRVIVSELG 241
L+++ + K+IV+ G +P L++LLK L NIA+ E R +V
Sbjct: 95 LSREKNPPLKLIVDAGLIPRLVELLKSSLHPRLQFEAAWALTNIASGASELTRAVVVGGA 154
Query: 242 VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+ +V +LS M V Q + +A +D+ + I L+TL+S
Sbjct: 155 IQPLVELLSSPHMTVCEQAVWALGNIAGDGPEFRDNVIASDAIPHLLTLVS 205
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| CGD|CAL0000730 orf19.5682 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 93 (37.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 27/130 (20%), Positives = 59/130 (45%)
Query: 165 IQMGQLSDRIEAAIELAS-LAKDNDRNKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXL 223
IQ ++ A ++ L+++++ ++++ G +P L++ +K L
Sbjct: 94 IQAPDFDSQLAATVKFRQILSREHNPPIDLVIQSGVIPTLVEFMKEDHPDMLQLEAAWAL 153
Query: 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAREN 282
NIA+ D + RV+V VP V +L ++V+ Q + +A + +D N
Sbjct: 154 TNIASGDSSQTRVVVEANAVPLFVQLLYSQSLEVKEQAIWALGNVAGDSSDNRDYVLSCN 213
Query: 283 VIRPLVTLLS 292
+ P++ L +
Sbjct: 214 AMEPVLQLFN 223
|
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| TAIR|locus:2179842 ABAP1 "ARMADILLO BTB protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 97 (39.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 36/137 (26%), Positives = 68/137 (49%)
Query: 408 LMTIMEITAAAESNADLRRAAFKTNSPAAKAV----VDQLLRVINDLDSPTLQIPAIKSI 463
L+ ++ + LR +F+ + ++ V + L+ ++ DS T+ AI +I
Sbjct: 233 LLNFPDVKVQRAAAGALRTVSFRNDENKSQIVELNALPTLVLMLQSQDS-TVHGEAIGAI 291
Query: 464 GSLARTFPARETRVI--G---PLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518
G+L + P + VI G P++ LS E EAA+ + +FA+P++ C H I
Sbjct: 292 GNLVHSSPDIKKEVIRAGALQPVIGLLSSTCLETQREAALLIGQFAAPDSD-CKVH---I 347
Query: 519 IEFNAVPPLMRLLRGND 535
+ A+ PL+++L +D
Sbjct: 348 AQRGAITPLIKMLESSD 364
|
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| TAIR|locus:2157358 AT5G50900 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 90 (36.7 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 34/147 (23%), Positives = 63/147 (42%)
Query: 180 LASLAKDNDRNKKIIVEEGGVPPLLKLLKXXXXXXXXXXXXXXLYNIANDQERVRVIVSE 239
LA+L ++ +V EGG+ L L N+A V++SE
Sbjct: 335 LANLTSGDEDLMISVVREGGIQCLKSFWDSVSSVKSLEVGVVLLKNLALCPIVREVVISE 394
Query: 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDD 299
+P +V VLS ++ V+I A V+ + + ++ + I PL+ +L + +++
Sbjct: 395 GFIPRLVPVLSCGVLGVRIAAAEAVSSLG-FSSKSRKEMGESGCIVPLIDMLDGKA-IEE 452
Query: 300 PRANSGKQSIHTIVQINKEMEKNSFVG 326
A S S + N+++ K S G
Sbjct: 453 KEAASKALSTLLVCTSNRKIFKKSDKG 479
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_X0585 | hypothetical protein (611 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 594 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 6e-13 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-09 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 2e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 4e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 3e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 5e-05 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.003 | |
| pfam01602 | 522 | pfam01602, Adaptin_N, Adaptin N terminal region | 0.003 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-13
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALY 224
+ + + EAA L++L+ N+ N + +VE GG+P L++LLK E AA AL
Sbjct: 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALR 74
Query: 225 NIANDQERVRVIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAE 269
N+A E ++IV E G VP +VN+L S +Q ++ +A
Sbjct: 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 194 IVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG-VPTIVNVLSDS 252
+++ GG+P L+ LL + Q AA AL N++ V E G +P +V +L
Sbjct: 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 253 IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+V + +A + + LV LL
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 8/90 (8%)
Query: 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG-VPPLLKLLKETASSEAQSAA 219
++ ++ G L ++ AA L L K+ D K+++ GG +PPLL LLK + S+EAQ AA
Sbjct: 63 LVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLL--GGCIPPLLSLLK-SGSAEAQKAA 119
Query: 220 ATALYNI----ANDQERVRVIVSELGVPTI 245
A A+Y + +D ++ +E VP++
Sbjct: 120 AEAIYAVSSGGLSDHVGSKIFSTEGVVPSL 149
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 187 NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227
+ NK+ ++E G VPPL++LL E Q AA AL N+A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLA 40
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Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 187 NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227
+D NK+ +V+ GG+P L++LLK E AA AL N++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 175 EAAIE-LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233
E A+ LA L + D +K I GG+PPL++LL ET S +A+ +AT L+N+ E +
Sbjct: 464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSEDI 522
Query: 234 RVIVSELG-VPTIVNVL 249
R V G VP ++ +L
Sbjct: 523 RACVESAGAVPALLWLL 539
|
Length = 2102 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+ EAA L ++A + K++V+ G VP ++LL T + + A AL NIA D E
Sbjct: 132 QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEG 190
Query: 233 VRVIVSELGV-PTIVNVLSDSIMKVQI 258
R V + G ++ +L S + + +
Sbjct: 191 CRDYVLQCGALEPLLGLLLSSAIHISM 217
|
Length = 526 |
| >gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 22/147 (14%)
Query: 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQ-----FNCLMTIMEITAAA 418
AL L N R + L L K++EK +Q CL T
Sbjct: 265 LAVNALGRLLSSPDENLRYV----ALRNLNKILEKHPPAVQHLDLIIFCLKT-------- 312
Query: 419 ESNADLRRAAFKT-----NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473
+ + +R A + K +V +LL+ ++++ P +I +K+IG LA FP
Sbjct: 313 DDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTD 372
Query: 474 ETRVIGPLVAHLSHRNQEVATEAAIAL 500
I L+ LS V E +
Sbjct: 373 AEWCIDVLLELLSLAGSYVVDEIVEVI 399
|
This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.98 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.98 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.96 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.95 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.91 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.83 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.8 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.79 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.59 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.53 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.52 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.44 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.43 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.42 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.39 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.38 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.32 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.29 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.28 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.27 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.26 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.16 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.1 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.08 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.95 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.87 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.79 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.74 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.72 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.67 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.64 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.59 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.59 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.54 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.48 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.48 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.43 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.38 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.37 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.37 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.35 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.35 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.33 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.27 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.25 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.2 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.16 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.12 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.1 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.07 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.93 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.93 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.93 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.87 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.85 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.82 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.81 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.78 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.77 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.77 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.75 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.71 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.68 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.68 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.67 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.54 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.53 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.49 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.47 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.38 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.36 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.33 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.32 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.26 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.2 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.19 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.17 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.17 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 97.09 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.05 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.04 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.03 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.01 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.98 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.87 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 96.85 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.85 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.8 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.72 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.68 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.39 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.36 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.36 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 96.31 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.22 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 96.2 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.17 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.12 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 95.92 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 95.86 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.61 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 95.54 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.54 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.53 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 95.53 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.48 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 95.44 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.41 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.2 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 94.98 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 94.97 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 94.97 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 94.87 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.59 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.58 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 94.54 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.47 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 94.34 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 94.34 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 94.3 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 94.27 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 94.21 | |
| PF05659 | 147 | RPW8: Arabidopsis broad-spectrum mildew resistance | 94.07 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.04 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 94.02 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 94.0 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.89 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.88 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.84 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 93.82 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 93.81 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.79 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 93.63 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.54 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 93.42 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 93.31 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 93.29 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 92.95 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 92.87 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 92.85 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 92.82 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 92.8 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.71 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 92.6 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 92.52 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 92.52 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 92.36 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.05 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 91.95 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 91.94 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.9 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 91.77 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 91.38 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 91.01 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 90.79 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 90.31 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 90.1 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 89.93 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 89.92 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 89.86 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 89.75 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 88.85 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 88.35 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 88.16 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 87.9 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 87.64 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 87.6 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 87.58 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 87.42 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 87.29 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 86.73 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 86.29 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 85.93 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 84.13 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 83.91 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 83.88 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 83.12 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 82.36 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 82.31 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 80.42 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 80.13 |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=312.88 Aligned_cols=350 Identities=20% Similarity=0.247 Sum_probs=292.2
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.|..+|..|. ..++..+.+|+|+|.+++.++.+..+.+++.|+||.|++||.+++ .+++++|+|||+|+++| +..|.
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHHHH
Confidence 4667888886 556999999999999999999999999999999999999999999 99999999999999995 55799
Q ss_pred HHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcC-HHhH-HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIM-KVQIQVASLVARMAEHD-ALAQ-DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~-~v~~~aa~aL~~La~~~-~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
.+++.|++++|+.++...+. ....+++|+|+|||.+. |... +.+. .+++.|+.++.+. |
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~--~iLp~L~~ll~~~----D------------ 250 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA--PILPALLRLLHST----D------------ 250 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH--HHHHHHHHHHhcC----C------------
Confidence 99999999999999988754 78899999999999874 3222 3333 3788888888665 1
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
.++...|++||.+|+.+.++..+.+++.|+++.
T Consensus 251 -----------------------------------------------~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 251 -----------------------------------------------EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR 283 (514)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence 134678999999999888888999999999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|+.+|.+.+..++..|+.++.||+ .++....+. +.++| +++.|..++.++....++..|+++|.|++....
T Consensus 284 LV~lL~~~~~~v~~PaLRaiGNIv---tG~d~QTq~--vi~~~----~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 284 LVDLLGHSSPKVVTPALRAIGNIV---TGSDEQTQV--VINSG----ALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HHHHHcCCCcccccHHHhhcccee---eccHHHHHH--HHhcC----hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 999999999999999999999987 555544452 34444 889999999877767799999999999997333
Q ss_pred h-----hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHh---HH
Q 040681 472 A-----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH---GL 542 (594)
Q Consensus 472 ~-----~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~---Al 542 (594)
. ...+++|.|+++|..+++++++||+|||+|++++++ +++.+++++.|+|+||+.+|...|. +... |+
T Consensus 355 ~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~---~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l 431 (514)
T KOG0166|consen 355 EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT---PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGL 431 (514)
T ss_pred HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC---HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHH
Confidence 1 123899999999999999999999999999999887 5999999999999999999987776 4333 33
Q ss_pred ----HHHH-------HHHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 ----ALEQ-------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 ----~l~~-------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
..++ ..+-..+| +.+..+.+|.|+.+++|.+|+.+|+.||+.
T Consensus 432 ~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 432 ENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 1111 22223344 777888999999999999999999999994
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=273.18 Aligned_cols=310 Identities=21% Similarity=0.305 Sum_probs=254.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~ 234 (594)
..+++.+.|.++|.+.+.+|....+.+.. ++..--..+++.|.||.+++++++......+-+|+|+|.|++.... .-+
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 45778889999999999999999887654 3334447888999999999999776547788899999999998544 456
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.++++|++|.++++|.+++.+|++++.|+|+|++..++.||+.+.++|++.+++.+|.+.. +|
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~-------------~~---- 214 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA-------------IH---- 214 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc-------------ch----
Confidence 6679999999999999999999999999999999999999999999999999999997541 00
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
..+.+++.+.|.|||+|...--..-.-..++|.|.+
T Consensus 215 --------------------------------------------ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 215 --------------------------------------------ISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred --------------------------------------------HHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 135778999999999987322222223447999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
|+.+.++++...|+|+|++|+.++. +.-++ +.+.| ....|+.+|.+. +..++.||++.+||+.. +...+
T Consensus 251 Liys~D~evlvDA~WAiSYlsDg~~---E~i~a--vld~g----~~~RLvElLs~~-sa~iqtPalR~vGNIVT-G~D~Q 319 (526)
T COG5064 251 LIYSRDPEVLVDACWAISYLSDGPN---EKIQA--VLDVG----IPGRLVELLSHE-SAKIQTPALRSVGNIVT-GSDDQ 319 (526)
T ss_pred HHhhcCHHHHHHHHHHHHHhccCcH---HHHHH--HHhcC----CcHHHHHHhcCc-cccccCHHHHhhcCeee-cCccc
Confidence 9999999999999999999985542 22232 23343 455688888754 48999999999999984 44344
Q ss_pred h------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 475 T------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 475 ~------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+ |+++.+-.+|.+....+++||||.|+|+++ +| .++.+++++.+.||+|+++|.+.+. .+++|+
T Consensus 320 TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-Gn---teqiqavid~nliPpLi~lls~ae~k~kKEAC 390 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-GN---TEQIQAVIDANLIPPLIHLLSSAEYKIKKEAC 390 (526)
T ss_pred eehheecccHHHHHHHhcChhhhhhhhhheeeccccc-CC---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 3 889999999999989999999999999998 66 5999999999999999999999888 888877
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=273.55 Aligned_cols=343 Identities=20% Similarity=0.273 Sum_probs=273.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
....++.+.++++..+..|..+++.+.. +.......++..|.||.||.+|+..+++.+|.+|+|+|.|++. ..+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4456788899999999999999887654 2223345555669999999999877669999999999999998 6667788
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
++++|++|.|+++|.+++.+|++.|+|+|+|++.+++.+|+.+.++|++.+|+.++.....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~------------------- 208 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK------------------- 208 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-------------------
Confidence 8899999999999999999999999999999999999999999999999999999876621
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..+.+++.++|.|||++...--..-.-..++|.|..+
T Consensus 209 -------------------------------------------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l 245 (514)
T KOG0166|consen 209 -------------------------------------------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL 245 (514)
T ss_pred -------------------------------------------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH
Confidence 1247789999999998873222233345589999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~ 475 (594)
+.+.|+++...|+|+|++|+++. |+.++- +.++ ++++.|+.+|.... ..++.||++++||++ ++...++
T Consensus 246 l~~~D~~Vl~Da~WAlsyLsdg~--ne~iq~---vi~~----gvv~~LV~lL~~~~-~~v~~PaLRaiGNIv-tG~d~QT 314 (514)
T KOG0166|consen 246 LHSTDEEVLTDACWALSYLTDGS--NEKIQM---VIDA----GVVPRLVDLLGHSS-PKVVTPALRAIGNIV-TGSDEQT 314 (514)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCC--hHHHHH---HHHc----cchHHHHHHHcCCC-cccccHHHhhcccee-eccHHHH
Confidence 99999999999999999998443 333333 2233 38899999998655 889999999999988 4444444
Q ss_pred ------ccHHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH-----
Q 040681 476 ------RVIGPLVAHLS-HRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL----- 542 (594)
Q Consensus 476 ------~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al----- 542 (594)
|++|.|..+|. +....+++||||+|+|++. || +++.++++++|.+|.|+.+|..++. +|++|.
T Consensus 315 q~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~---~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GN---QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISN 390 (514)
T ss_pred HHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CC---HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHh
Confidence 88999999997 5666699999999999999 77 5999999999999999999999998 999877
Q ss_pred -----------HHHHHHHHHHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 543 -----------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 543 -----------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
-|.+.+++.-|... ...+|+.+.....++++-|..
T Consensus 391 ~ts~g~~~qi~yLv~~giI~plcdl---L~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVEQGIIKPLCDL---LTCPDVKIILVALDGLENILK 436 (514)
T ss_pred hcccCCHHHHHHHHHcCCchhhhhc---ccCCChHHHHHHHHHHHHHHH
Confidence 12223333333221 134577777777777776644
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-29 Score=301.97 Aligned_cols=339 Identities=17% Similarity=0.181 Sum_probs=271.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 040681 159 WSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIV 237 (594)
Q Consensus 159 ~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv 237 (594)
..+|.+|..++.+.+.+++++|.+++.+++++++.|++.|+||+|+++|++++ ..+|+.|+++|+||+. +++++..|+
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIi 485 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAIT 485 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34777888889999999999999999999999999999999999999999998 9999999999999997 677899999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
++|+||+|+++|.+++.++++.|+|+|+|||.+++.++..+.++|++++|+++|.+++.+. .+...+ .+.|+
T Consensus 486 eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~------q~~Aa~--AL~nL 557 (2102)
T PLN03200 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG------QEIAAK--TLTKL 557 (2102)
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH------HHHHHH--HHHHH
Confidence 9999999999999999999999999999999988788888889999999999998874211 011122 22333
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc---CChhhHHHHHhhCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR---GSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~---~~~~~~~~i~e~g~l~~L~~ 394 (594)
.... +...+++++..+ ..+++ .++..+.++|.++.. +++...+.....|+++.|++
T Consensus 558 i~~~----d~~~I~~Lv~LL-------------lsdd~----~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 558 VRTA----DAATISQLTALL-------------LGDLP----ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred Hhcc----chhHHHHHHHHh-------------cCCCh----hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 2211 112223333222 12333 235566777777643 22222333346799999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
||+++++.+++.|+|+|.|++ .++++++.. +.. .+++++|+.+|.+++ .+++..++++|+||++.....+
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~---a~~~d~~~a-vv~-----agaIpPLV~LLss~~-~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIF---SSRQDLCES-LAT-----DEIINPCIKLLTNNT-EAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHh---cCChHHHHH-HHH-----cCCHHHHHHHHhcCC-hHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999998 567777774 342 348999999998776 8899999999999997544332
Q ss_pred ------hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 475 ------TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 475 ------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.|++++|+++|++.+.++...|+.+|.|++. +.+....+.+.|+|++|+++|++|++ .+++|.
T Consensus 687 ~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-----~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-----DPEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-----CchHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 3899999999999999999999999999988 35788889999999999999999988 777655
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=290.03 Aligned_cols=354 Identities=17% Similarity=0.159 Sum_probs=278.6
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 158 VWSYIAAIQMGQLSD-RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~-~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
+|-|+.++.+.++.. +..++.+|+.+. +|+.+++.+.+.|++++||.||...+ .++|++++++|++|+. +++.++.
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~~L~~~daik~LV~LL~~~~-~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSRKLNHAEAKKVLVGLITMAT-ADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhccchhhhhhhhccCC-HHHHHHHHHHHHHHhCCCHHHHHH
Confidence 578888888776554 677788888876 45899999999999999999999998 9999999999999997 5778999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
|++.|++|.|+++|++++..+|+.++|+|++|+..+++.+..+.++|+||+|+++|.++.
T Consensus 442 Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~-------------------- 501 (2102)
T PLN03200 442 LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS-------------------- 501 (2102)
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------------------
Confidence 999999999999999999999999999999999888889999999999999999997662
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..|+++|+|++..+++++..+.+.|+++.|+++
T Consensus 502 -------------------------------------------~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L 538 (2102)
T PLN03200 502 -------------------------------------------QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538 (2102)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence 1357889999999987555555556688999999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCC-------------HHHHHHhh---------------hcCChhhHHHHHHHHHHH
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESN-------------ADLRRAAF---------------KTNSPAAKAVVDQLLRVI 447 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~-------------~~~r~~~~---------------~~~~~~~~~~v~~Ll~lL 447 (594)
|++++.+.|.+|+|+|.||+...+.. +..+..++ ....-...++++.|..++
T Consensus 539 L~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred HhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 99999999999999999996322110 00000000 000000134889999999
Q ss_pred hcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcC
Q 040681 448 NDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFN 522 (594)
Q Consensus 448 ~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g 522 (594)
++++ +.+++.|+++|.+++...+.. ..|++++|+.+|.+++.+++++|+|+|.|+..+.+ .+++..+++.|
T Consensus 619 ~sgs-~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~---~~q~~~~v~~G 694 (2102)
T PLN03200 619 SSSK-EETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK---ENRKVSYAAED 694 (2102)
T ss_pred cCCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC---HHHHHHHHHcC
Confidence 9776 999999999999999755432 23899999999999999999999999999987444 46677889999
Q ss_pred ChHHHHHhccCCch-HhHhHH--------------HHHHHHHHHHHhhhccccccccchHHHHHHHHHHhcccccc
Q 040681 523 AVPPLMRLLRGNDR-TQLHGL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHA 583 (594)
Q Consensus 523 ~i~~Lv~lL~~~~~-vq~~Al--------------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~ 583 (594)
+|++|+++|..++. +...|+ ++...+++..|....+. ..++.|+-..+|+..|..-++
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~---G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE---GTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---CChHHHHHHHHHHHHHHhCCC
Confidence 99999999998876 655554 12223333333322221 257788888888887755443
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=240.26 Aligned_cols=351 Identities=17% Similarity=0.234 Sum_probs=278.3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHH
Q 040681 157 WVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~ 234 (594)
.|+.+|+++ .+...-.+.+|+|+|.|++.+.....+.+++.|+||.+++||.+++ .+++++++|||+|+++|.+ +|+
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchhHHH
Confidence 366678888 4556667899999999999998888999999999999999999998 9999999999999999655 688
Q ss_pred HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhc-CHH-hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 235 VIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEH-DAL-AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
.+.++|++.+++.+|.+. +..+..++.|+|+|||.. +|. .-..+.+ ++|.|.+|+.+.
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiys~---------------- 255 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIYSR---------------- 255 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHhhc----------------
Confidence 888999999999999877 568899999999999975 332 2333433 688888887554
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
|| ++...|++|+..|+.|..+..+.+.+.|.-+
T Consensus 256 -------------------------------------------D~----evlvDA~WAiSYlsDg~~E~i~avld~g~~~ 288 (526)
T COG5064 256 -------------------------------------------DP----EVLVDACWAISYLSDGPNEKIQAVLDVGIPG 288 (526)
T ss_pred -------------------------------------------CH----HHHHHHHHHHHHhccCcHHHHHHHHhcCCcH
Confidence 11 2356789999999888888888999999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.|+.+|.+++..+|..|+..+.||.. ++. .+.. +..+.| +++.+..+|.+.. ..++..||++|.|+....
T Consensus 289 RLvElLs~~sa~iqtPalR~vGNIVT---G~D-~QTq-viI~~G----~L~a~~~lLs~~k-e~irKEaCWTiSNITAGn 358 (526)
T COG5064 289 RLVELLSHESAKIQTPALRSVGNIVT---GSD-DQTQ-VIINCG----ALKAFRSLLSSPK-ENIRKEACWTISNITAGN 358 (526)
T ss_pred HHHHHhcCccccccCHHHHhhcCeee---cCc-ccee-hheecc----cHHHHHHHhcChh-hhhhhhhheeecccccCC
Confidence 99999999999999999999999973 332 2332 344555 5666666666554 799999999999998543
Q ss_pred hhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch----HhHhH
Q 040681 471 PAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR----TQLHG 541 (594)
Q Consensus 471 ~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~----vq~~A 541 (594)
... +...||+|+++|..-+..+++|||||+.|..++++. -++..+.+++.|.|+||+.+|...+. ++..|
T Consensus 359 teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~ 437 (526)
T COG5064 359 TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDA 437 (526)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHH
Confidence 221 237799999999999999999999999999886653 46888999999999999999995543 45555
Q ss_pred H-------HHHHHH------HHHH-Hh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 542 L-------ALEQAR------VLTA-LE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 542 l-------~l~~~~------~l~~-Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
+ +..+.. .-.+ .| +.+..+-+|+...+.++.+|+++|+.||+.
T Consensus 438 ~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 438 IENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHccc
Confidence 5 111110 1111 22 555566788999999999999999999964
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=221.59 Aligned_cols=298 Identities=23% Similarity=0.312 Sum_probs=256.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
|+..+.++..+++..|+.||.+++.. +.+|.-|...|++.||.+|-++.+ ..+|..+..+|.|+....++|+.++.+|
T Consensus 131 Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmThs~EnRr~LV~aG 208 (550)
T KOG4224|consen 131 LILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTHSRENRRVLVHAG 208 (550)
T ss_pred HHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhhhhhhhhhhhccC
Confidence 44455667778999999999999988 899999999999999999878777 9999999999999999999999999999
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC--ChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAREN--VIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
++|.||.+++++++++|..++.++++++. +...|..+++.+ .++.||+++.+++
T Consensus 209 ~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s----------------------- 264 (550)
T KOG4224|consen 209 GLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGS----------------------- 264 (550)
T ss_pred CchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCC-----------------------
Confidence 99999999999999999999999999998 567899999988 8999999997773
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK 398 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~ 398 (594)
.++|..|.-||++++. +.+.+..+++.|++|.+++||++
T Consensus 265 ----------------------------------------~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs 303 (550)
T KOG4224|consen 265 ----------------------------------------DKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQS 303 (550)
T ss_pred ----------------------------------------hHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhC
Confidence 1346678899999974 67789999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-----h
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA-----R 473 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~-----~ 473 (594)
+..........|+.||+ +...|. ..... .+++.+|+++|+..++.+++..|..+|+||+...+. .
T Consensus 304 ~~~plilasVaCIrnis-ihplNe-----~lI~d----agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 304 PMGPLILASVACIRNIS-IHPLNE-----VLIAD----AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred cchhHHHHHHHHHhhcc-cccCcc-----cceec----ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 88887788899999986 444553 12323 348899999999999899999999999999975432 2
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHh
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH 540 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~ 540 (594)
+.|+||.+..++-++...+|.+-..++.-++- ..+.+.++.+.|.++.|+.++.+... +|-+
T Consensus 374 esgAi~kl~eL~lD~pvsvqseisac~a~Lal-----~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN 436 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDGPVSVQSEISACIAQLAL-----NDNDKEALLDSGIIPILIPWTGSESEEVRGN 436 (550)
T ss_pred hcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-----ccccHHHHhhcCCcceeecccCccchhhccc
Confidence 34999999999999999999998888888776 23567889999999999999987765 7654
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=203.79 Aligned_cols=329 Identities=22% Similarity=0.284 Sum_probs=259.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC--C
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL--G 241 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g--~ 241 (594)
.-++.|..++..|..+|.++... .++|+.++..|++|.||.++++++ .++|+.++.+++|++.+.-.|+.+++.+ .
T Consensus 175 LakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d-~dvqyycttaisnIaVd~~~Rk~Laqaep~l 252 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGD-LDVQYYCTTAISNIAVDRRARKILAQAEPKL 252 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCC-hhHHHHHHHHhhhhhhhHHHHHHHHhcccch
Confidence 33678888999999999999865 899999999999999999999999 9999999999999999999999999988 9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcc
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEK 321 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~ 321 (594)
+|.||.+..+++++++-.|..+|.||++ +.+.+..+.+.|++|.||++|+++..
T Consensus 253 v~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~~------------------------- 306 (550)
T KOG4224|consen 253 VPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPMG------------------------- 306 (550)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcch-------------------------
Confidence 9999999999999999999999999998 45788889999999999999976621
Q ss_pred cccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCC-
Q 040681 322 NSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ- 400 (594)
Q Consensus 322 ~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~- 400 (594)
.+......+++|++ -++-+--.|++.|.+.+|+.+|..++
T Consensus 307 --------------------------------------plilasVaCIrnis-ihplNe~lI~dagfl~pLVrlL~~~dn 347 (550)
T KOG4224|consen 307 --------------------------------------PLILASVACIRNIS-IHPLNEVLIADAGFLRPLVRLLRAGDN 347 (550)
T ss_pred --------------------------------------hHHHHHHHHHhhcc-cccCcccceecccchhHHHHHHhcCCc
Confidence 11233456788986 46777888999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh----hc
Q 040681 401 GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE----TR 476 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~----~~ 476 (594)
+++|..|..+|.||+.-.++|. + +|. .+| .++.+..++..++ ..+|..-..++.-|+-+...++ .|
T Consensus 348 EeiqchAvstLrnLAasse~n~---~-~i~-esg----Ai~kl~eL~lD~p-vsvqseisac~a~Lal~d~~k~~lld~g 417 (550)
T KOG4224|consen 348 EEIQCHAVSTLRNLAASSEHNV---S-VIR-ESG----AIPKLIELLLDGP-VSVQSEISACIAQLALNDNDKEALLDSG 417 (550)
T ss_pred hhhhhhHHHHHHHHhhhhhhhh---H-HHh-hcC----chHHHHHHHhcCC-hhHHHHHHHHHHHHHhccccHHHHhhcC
Confidence 5699999999999986555543 4 344 333 6788888887766 8899888888888886655444 39
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHc-----CCh-HHHHHhccCCch-HhHhHHHHHHHHH
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF-----NAV-PPLMRLLRGNDR-TQLHGLALEQARV 549 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~-----g~i-~~Lv~lL~~~~~-vq~~Al~l~~~~~ 549 (594)
++|.|+..+.+.+.+|+.+|+.||.||++ .++|-..++++ +|| ..|++++.+++. ++.-|. -.+
T Consensus 418 i~~iLIp~t~s~s~Ev~gNaAaAL~Nlss-----~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~----wTI 488 (550)
T KOG4224|consen 418 IIPILIPWTGSESEEVRGNAAAALINLSS-----DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIAR----WTI 488 (550)
T ss_pred CcceeecccCccchhhcccHHHHHHhhhh-----hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHH----HHH
Confidence 99999999999999999999999999987 34665566654 455 458888887776 443332 223
Q ss_pred HHHHhhhcc---ccccccchHHHHHHHHHHhc
Q 040681 550 LTALEGADR---TVVAQHPELKELVSEALYHL 578 (594)
Q Consensus 550 l~~Le~~~~---~~~~q~~~~~~l~~~a~~~l 578 (594)
...+|...- .++-.++++.+++.+-..|.
T Consensus 489 ~qLle~h~~~~~~~i~~~ddii~~~~~~~~r~ 520 (550)
T KOG4224|consen 489 QQLLEDHDLPLTAFIQSSDDIIELLNDIVARD 520 (550)
T ss_pred HHHHHhCCccHHHHHhCchhHHHHHHHHHHHh
Confidence 334442111 11112456666666666655
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=185.93 Aligned_cols=336 Identities=22% Similarity=0.258 Sum_probs=259.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
|.-|+..|..++.+....++..|..++.. .+|+..+.+.|+|++|++++.+++ .+++..++++|.||+.|++.|..++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSfd~~~R~~mV 369 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSFDPELRSQMV 369 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45578889999999999999999999988 789999999999999999999988 9999999999999999999999999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+.|.+|.|+.+|.++ ..+..+..+|++||. +++++..|...++++.+++++-.++...
T Consensus 370 ~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~------------------- 427 (708)
T PF05804_consen 370 SLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEE------------------- 427 (708)
T ss_pred HCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCcc-------------------
Confidence 999999999999865 466779999999998 5589999999999999999876552100
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
+...+...+.|++ .++.+.+.+++.|+++.|++..-
T Consensus 428 -------------------------------------------v~~eliaL~iNLa-~~~rnaqlm~~g~gL~~L~~ra~ 463 (708)
T PF05804_consen 428 -------------------------------------------VQLELIALLINLA-LNKRNAQLMCEGNGLQSLMKRAL 463 (708)
T ss_pred -------------------------------------------ccHHHHHHHHHHh-cCHHHHHHHHhcCcHHHHHHHHH
Confidence 1223466778896 57888999999999999999876
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-----
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----- 472 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----- 472 (594)
+..+.+- ...|.||+ .++...+. .|. ..+..|++++.+.++++....|+++|+||......
T Consensus 464 ~~~D~lL---lKlIRNiS---~h~~~~k~-~f~-------~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll 529 (708)
T PF05804_consen 464 KTRDPLL---LKLIRNIS---QHDGPLKE-LFV-------DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLL 529 (708)
T ss_pred hcccHHH---HHHHHHHH---hcCchHHH-HHH-------HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHH
Confidence 6554432 35788887 55545555 344 37888999999888899999999999999854321
Q ss_pred hhhccHHHHHHhccCC--CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--c-h--HhHh-HH-H
Q 040681 473 RETRVIGPLVAHLSHR--NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--D-R--TQLH-GL-A 543 (594)
Q Consensus 473 ~~~~~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~-~--vq~~-Al-~ 543 (594)
.+.+++|.|..+|..+ ..++..+++..++.+++ +++....+.+.|.++.|+.+|... | + +|.- ++ .
T Consensus 530 ~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-----d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 530 QEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-----DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-----CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 1238899999999544 56899999999999988 356677888999999999999943 2 3 3442 22 1
Q ss_pred -----------HHHHHHHHHHhhhccccccccchHHHHHHHHHHhcccccc
Q 040681 544 -----------LEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHA 583 (594)
Q Consensus 544 -----------l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~ 583 (594)
+.+.++...|-..-+. .++++++....++.++--|..
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d---~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHD---KNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhCH
Confidence 1112222222111111 246888888888877755543
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=184.05 Aligned_cols=355 Identities=17% Similarity=0.161 Sum_probs=249.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC---ChhHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN---DQERV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~---~~~~~ 233 (594)
.+.+.|.+|.+.++..+..|+..|..+|+++.+.+..+.+.|+|+.||.+|.+.+ .++|.+|+++|.||.. +++++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcccc
Confidence 3567888999999999999999999999999999999999999999999999998 9999999999999985 34589
Q ss_pred HHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCc---CCCcc-Cccchhh
Q 040681 234 RVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETF---VDDPR-ANSGKQS 308 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~-~v~~~~s 308 (594)
-.|.+.++|+.++++|+. .|.++++.++.+|+||+++| ..+..+.. .++..|-..+-.+.. .++.. .+....-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCccccccccee
Confidence 999999999999999997 59999999999999999975 45555543 355555554332211 00000 0000000
Q ss_pred HH--HHHHHhhhhcc-----cccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-hh-
Q 040681 309 IH--TIVQINKEMEK-----NSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV-AN- 379 (594)
Q Consensus 309 i~--~l~l~~~~~~~-----~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~-~~- 379 (594)
+. .-|+.|++... .++...|.|..|+.+.++.- .....++ +..++|...|+||+---. ++
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i------~~~~~d~-----K~VENcvCilRNLSYrl~~Evp 459 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAI------QKSDLDS-----KSVENCVCILRNLSYRLEAEVP 459 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHH------Hhccccc-----hhHHHHHHHHhhcCchhhhhcC
Confidence 00 12555665422 33456788888875443110 0011222 224555555666531100 00
Q ss_pred -----------------------------HHH----------------------HHhhCcHHHHHHHhh-hCCHHHHHHH
Q 040681 380 -----------------------------SRR----------------------ISETKGLLCLAKLVE-KEQGELQFNC 407 (594)
Q Consensus 380 -----------------------------~~~----------------------i~e~g~l~~L~~LL~-~~~~~v~~~A 407 (594)
.+. ....-+|..-..||. +.+..+.+++
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEas 539 (717)
T KOG1048|consen 460 PKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEAS 539 (717)
T ss_pred HhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHh
Confidence 000 011112333334443 4567889999
Q ss_pred HHHHHHHHHHhcCCH-HHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh---ccHHHHHH
Q 040681 408 LMTIMEITAAAESNA-DLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET---RVIGPLVA 483 (594)
Q Consensus 408 ~~aL~nL~~~~~~~~-~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~---~~i~~Lv~ 483 (594)
+.+|.|+++...--+ .++. .+... +.+.+.|+++|+..+ +.+.+.++.+|+||+++..+++. ++|+.||+
T Consensus 540 aGaLQNltA~~~~~~~~~~~-~v~~k----ekgl~~l~~ll~~~~-~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~ 613 (717)
T KOG1048|consen 540 AGALQNLTAGLWTWSEYMRG-AVFRK----EKGLPPLVELLRNDD-SDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVR 613 (717)
T ss_pred hhhHhhhhccCCcchhHHHh-hhhhh----ccCccHHHHHHhcCC-chHHHHHHHHHhhhccCchhhhhhhcchHHHHHH
Confidence 999999996654333 3444 34322 347899999999877 89999999999999988776553 79999999
Q ss_pred hccCC------CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 484 HLSHR------NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 484 lL~~~------~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
.|.+. +.++...+|.+|.|++. +| .++.+.+.+.+|++.|+.+..+..
T Consensus 614 ~Lp~~~~~~~~sedtv~~vc~tl~niv~-~~---~~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 614 CLPGSGPSTSLSEDTVRAVCHTLNNIVR-KN---VLNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred hCcCCCCCcCchHHHHHHHHHhHHHHHH-Hh---HHHHHHHHhccChHHHHHHhcccC
Confidence 99432 46889999999999987 55 589999999999999999988643
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=177.23 Aligned_cols=277 Identities=18% Similarity=0.190 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhc
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLS 250 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~ 250 (594)
..-+.+...|.|++.+ +++...+++.|+|+.|+++|++++ .++...+++.|.+|+-..+++..+.+.|++++|++++.
T Consensus 264 qLlrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3344666779999976 899999999999999999999988 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCc
Q 040681 251 DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNY 330 (594)
Q Consensus 251 ~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~ 330 (594)
+++.+++..+.++|.||+. ++..|..+++.|++|.|+.+|.++.
T Consensus 342 s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~----------------------------------- 385 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN----------------------------------- 385 (708)
T ss_pred CCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc-----------------------------------
Confidence 9999999999999999998 5689999999999999999997652
Q ss_pred ccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-CCHHHHHHHHH
Q 040681 331 RPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-EQGELQFNCLM 409 (594)
Q Consensus 331 ~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-~~~~v~~~A~~ 409 (594)
.+..+...|.+++. +++.+..+...+++|.++++|-. +++.++...++
T Consensus 386 ------------------------------~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~elia 434 (708)
T PF05804_consen 386 ------------------------------FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIA 434 (708)
T ss_pred ------------------------------hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHH
Confidence 13346788999975 67888889999999999998755 45667778888
Q ss_pred HHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh---ccHHHHHHhcc
Q 040681 410 TIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET---RVIGPLVAHLS 486 (594)
Q Consensus 410 aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~---~~i~~Lv~lL~ 486 (594)
.+.|++ .++...+ .+. .. ++++.|++..-+..++ ..++.++|++...+..+. +++.+|+.++.
T Consensus 435 L~iNLa----~~~rnaq-lm~-~g----~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 435 LLINLA----LNKRNAQ-LMC-EG----NGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFVDFIGDLAKIVS 500 (708)
T ss_pred HHHHHh----cCHHHHH-HHH-hc----CcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 888887 3443444 233 22 2566666554433322 235899999987755554 56778888885
Q ss_pred C-CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 487 H-RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 487 ~-~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
. .+.+...++..+|+|+..+ + .+..+.+.+.+.+|.|.++|..+
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~-~---ld~~~ll~~~~llp~L~~~L~~g 545 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIP-D---LDWAQLLQEYNLLPWLKDLLKPG 545 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccC-C---cCHHHHHHhCCHHHHHHHHhCCC
Confidence 4 5778999999999999873 2 24455556789999999999855
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=148.58 Aligned_cols=352 Identities=16% Similarity=0.185 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHHHHHH----hccCCCceeeeeeecchhhHHHHHHHHHh-hcCcchhhhhccc-CCCCCCCCCcccccC
Q 040681 73 VVSEVSKNLERSLTLVR----KCKRQSVLRRVVTIVSAADFRKLLNLLDA-SVGDMRWLLSIFD-SENGGASGGIVLTLP 146 (594)
Q Consensus 73 ~~~~~~~~l~~~~~l~~----~c~~~g~~~r~~~~~~~~~~~~~~~~l~~-~~~d~~~ll~~~~-~~~~~~~~~~~~~l~ 146 (594)
|=..+.+.+++...|.+ .|+. ++..|+..-. +++++.++..++. +.++...+++... ... ..-+.|
T Consensus 68 i~e~i~~~~~E~s~ll~~l~d~ck~-~~A~r~la~~-~ga~~~~it~~~la~~~~~~~l~ksL~al~~------lt~~qp 139 (461)
T KOG4199|consen 68 IKEHIGQKLEETTELLEQLADECKK-SLAHRVLAGK-NGAHDALITLLELAESPNESVLKKSLEAINS------LTHKQP 139 (461)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhh-hHHHHHHhcc-CCCcchhhhHHHHhhCCchhHHHHHHHHHHH------hhcCCc
Confidence 33445566777776554 5555 6777766654 7888888877663 4566665554221 000 011345
Q ss_pred CcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh-ccCCCHHHHHHHHHHHHH
Q 040681 147 PIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL-KETASSEAQSAAATALYN 225 (594)
Q Consensus 147 ~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~ 225 (594)
.+...+.+ ..+.+++. ++.++.+.......+++.-|..++.||+.+++.+..+.+.+.| ..+. ..+..++.|+++.
T Consensus 140 dl~da~g~-~vvv~lL~-~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk-~~~VRel~~a~r~ 216 (461)
T KOG4199|consen 140 DLFDAEAM-AVVLKLLA-LKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK-TRTVRELYDAIRA 216 (461)
T ss_pred chhccccH-HHHHHHHh-cccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc-cHHHHHHHHHHHH
Confidence 55444433 34555543 3667778888889999999999999999999999999998655 5566 5788899999999
Q ss_pred hhCChhHH----------HHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 226 IANDQERV----------RVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 226 La~~~~~~----------~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
|..+++.| +.|+++|++..|+..|.-+ ++++......+|..|+.++ +....+.+.||+..|+.++.+.
T Consensus 217 l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~ 295 (461)
T KOG4199|consen 217 LLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDS 295 (461)
T ss_pred hcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhh
Confidence 99877654 7888999999999999988 8999999999999999977 5667778999999999999775
Q ss_pred CcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc
Q 040681 295 TFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR 374 (594)
Q Consensus 295 ~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~ 374 (594)
..++ . ..+...++..|+.|+
T Consensus 296 n~~~----------------------------------------------------------~-r~l~k~~lslLralA- 315 (461)
T KOG4199|consen 296 NEQG----------------------------------------------------------N-RTLAKTCLSLLRALA- 315 (461)
T ss_pred chhh----------------------------------------------------------H-HHHHHHHHHHHHHHh-
Confidence 3111 0 123455778889996
Q ss_pred CChhhHHHHHhhCcHHHHHHHhhh--CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC
Q 040681 375 GSVANSRRISETKGLLCLAKLVEK--EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS 452 (594)
Q Consensus 375 ~~~~~~~~i~e~g~l~~L~~LL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~ 452 (594)
|+++++..|++.|+.+.++.++.. .++.+...++.+++-|| -..|+.... |. ..| .-+..+..++.++-
T Consensus 316 G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~---LR~pdhsa~-~i-e~G----~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 316 GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC---LRSPDHSAK-AI-EAG----AADLAVQAMKAHPV 386 (461)
T ss_pred CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH---hcCcchHHH-HH-hcc----hHHHHHHHHHhCcH
Confidence 899999999999999999999864 45677777777887666 556665553 44 233 44556677777764
Q ss_pred -hhhHHHHHHHHHHhhcCChhhhh----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 453 -PTLQIPAIKSIGSLARTFPARET----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 453 -~~v~~~a~~aL~~La~~~~~~~~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..+|..++..++|++..+.+..+ .++..|++.-...++.....|-.||..+.+
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 67899999999999976554433 668888888888888888888889999988
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-14 Score=151.71 Aligned_cols=332 Identities=16% Similarity=0.130 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDR--NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~--~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
.|..+|+.|.+...+++.+|+++|+|+..++.. |+..|.+.+|||.|+++|+...+.+++++.+.+|+||+..+..+.
T Consensus 276 gI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~ 355 (717)
T KOG1048|consen 276 GIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM 355 (717)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH
Confidence 477799999999999999999999999997666 999999999999999999974339999999999999999977777
Q ss_pred HHHhcCCHHHHHHhhcCC--------------CHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChhhHHHhhhcCCcCCC
Q 040681 235 VIVSELGVPTIVNVLSDS--------------IMKVQIQVASLVARMAEHDALAQDDFARE-NVIRPLVTLLSFETFVDD 299 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--------------~~~v~~~aa~aL~~La~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~ 299 (594)
.|+.. +++.|..-+-.+ +.++-.+++.+|.|+++...+.|+.+.++ |.|..|+..+++.....+
T Consensus 356 ~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 356 LIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred HHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 77753 577776644211 25688899999999999777899999886 669999999874321111
Q ss_pred ccCccchhhHHHH-HHHhhhhccc--cc-------ccC----CCccc--ccchhc----c-------c--cCCCccccc-
Q 040681 300 PRANSGKQSIHTI-VQINKEMEKN--SF-------VGS----KNYRP--YLYSEY----C-------S--SRSGQNRKD- 349 (594)
Q Consensus 300 ~~~v~~~~si~~l-~l~~~~~~~~--~~-------~~~----g~~~~--L~~~~~----~-------~--s~~~~~~~~- 349 (594)
. .++..-..+ ++-|+++.-. +. .+. +.-+| ...++. . + ..-....|+
T Consensus 435 ~---d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 435 L---DSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred c---cchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 1 111100111 3344443210 00 000 00000 000000 0 0 000000001
Q ss_pred cccCChHH------------HHHHHHHHHHHHHHhccCC----hhhHHHH-HhhCcHHHHHHHhhhCCHHHHHHHHHHHH
Q 040681 350 RENEKPEV------------KIKLKIACAEALWMLARGS----VANSRRI-SETKGLLCLAKLVEKEQGELQFNCLMTIM 412 (594)
Q Consensus 350 ~~~~dp~~------------k~~l~~~a~~aL~~L~~~~----~~~~~~i-~e~g~l~~L~~LL~~~~~~v~~~A~~aL~ 412 (594)
.-...|++ +....+.+++||-||+.++ ..++..+ ..+.+++.++.||+.+++.+...++.+|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 00111221 2345678899999998776 3445555 78899999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-----hhhHHHHHHHHHHhhcCChhh-----hhccHHHHH
Q 040681 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS-----PTLQIPAIKSIGSLARTFPAR-----ETRVIGPLV 482 (594)
Q Consensus 413 nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~-----~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv 482 (594)
||+ .++.++.. +. +.+++.|++.|..+.. +++...++.+|.|+.+..... +.+.++.|+
T Consensus 592 Nls----~d~rnk~l-ig------k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~ 660 (717)
T KOG1048|consen 592 NLS----RDIRNKEL-IG------KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLR 660 (717)
T ss_pred hhc----cCchhhhh-hh------cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHH
Confidence 997 45555552 22 4588999999987665 788899999999999755432 338899999
Q ss_pred HhccC-CCHHHHHHHHHHHHHh
Q 040681 483 AHLSH-RNQEVATEAAIALQKF 503 (594)
Q Consensus 483 ~lL~~-~~~~v~~~Aa~aL~nl 503 (594)
.+..+ .++.+.+.|+..|..|
T Consensus 661 ~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 661 LISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred HHhcccCCHHHHHHHHHHHHHH
Confidence 98855 5668888888888887
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-12 Score=130.53 Aligned_cols=200 Identities=18% Similarity=0.191 Sum_probs=162.4
Q ss_pred HHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH
Q 040681 194 IVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL 273 (594)
Q Consensus 194 i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~ 273 (594)
+.+.+.+..|+.+|+..+++.+++.+..+++|.+.++.++..|.+.|+++.+..+|.++++.+++.|.++|.||+.+. +
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-E 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-h
Confidence 467788999999999875599999999999999999999999999999999999999999999999999999999854 6
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
++..+.. .++.+++.+.+... ++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~l--ns----------------------------------------------------- 109 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPL--NS----------------------------------------------------- 109 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCC--CC-----------------------------------------------------
Confidence 8888754 46666665443310 11
Q ss_pred ChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCC
Q 040681 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~ 433 (594)
.++..+.++|.+|+.. ++.+..+. +.++.|+.||.+|+..+|.+++.+|.||+ .++++.+..+..
T Consensus 110 ------~~Q~agLrlL~nLtv~-~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS----~np~~~~~Ll~~-- 174 (254)
T PF04826_consen 110 ------EVQLAGLRLLTNLTVT-NDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS----ENPDMTRELLSA-- 174 (254)
T ss_pred ------HHHHHHHHHHHccCCC-cchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc----cCHHHHHHHHhc--
Confidence 2466789999999754 44455554 47999999999999999999999999997 567665533321
Q ss_pred hhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 434 PAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 434 ~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++..++.+++...+.++...++..+.|+....
T Consensus 175 ----q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 175 ----QVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred ----cchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 267888999988877889999999999997543
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-11 Score=119.80 Aligned_cols=380 Identities=14% Similarity=0.167 Sum_probs=250.1
Q ss_pred eeecchhhHHHHHHHHHhhcCcchhhhhcccCCCCCCCCCcccccCCcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040681 101 VTIVSAADFRKLLNLLDASVGDMRWLLSIFDSENGGASGGIVLTLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIEL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~l~~~~~d~~~ll~~~~~~~~~~~~~~~~~l~~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L 180 (594)
|.+.|..+-+..+.++++..+++..+.+-++-+.. .+.|.+ .+.+.++-.-+. .-++. -...|
T Consensus 21 f~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~-------~~qp~i------~~~~~~i~e~i~-~~~~E---~s~ll 83 (461)
T KOG4199|consen 21 FSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQ-------TGQPVI------NETVDKIKEHIG-QKLEE---TTELL 83 (461)
T ss_pred HhcCccccchHHHHHHHhccCcccccccccCCCCC-------CCCccH------HHhHHHHHHHHH-hhhHH---HHHHH
Confidence 33447778889999999999999877654432111 122322 111111111111 11111 12222
Q ss_pred HHhh---ccCchhHHHHHhcCChHHHHHhhc---cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC--
Q 040681 181 ASLA---KDNDRNKKIIVEEGGVPPLLKLLK---ETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-- 252 (594)
Q Consensus 181 ~~la---~~~~~~~~~i~~~g~I~~Lv~LL~---~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-- 252 (594)
.+++ +.+...+-.-.+.|+.+.++.++. +++ ..+..+++.+|..+... ...+.++-++..++++|...
T Consensus 84 ~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~~~~~ 159 (461)
T KOG4199|consen 84 EQLADECKKSLAHRVLAGKNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLALKVE 159 (461)
T ss_pred HHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHhcccc
Confidence 2222 111111122224566676665543 344 66777788888777653 34566788999999999654
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCccc
Q 040681 253 IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRP 332 (594)
Q Consensus 253 ~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~ 332 (594)
+.++.......+..-|-.++.+|+.|.+.++++.+...|..+. +
T Consensus 160 ~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g---k--------------------------------- 203 (461)
T KOG4199|consen 160 SEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG---K--------------------------------- 203 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC---c---------------------------------
Confidence 7778888888888888888899999999999999988876552 1
Q ss_pred ccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh----------hHHHHHhhCcHHHHHHHhhhC-CH
Q 040681 333 YLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA----------NSRRISETKGLLCLAKLVEKE-QG 401 (594)
Q Consensus 333 L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~----------~~~~i~e~g~l~~L~~LL~~~-~~ 401 (594)
..+.+.+++|++.|.. +++ .-+.|+.+|++..|...+.-+ ++
T Consensus 204 --------------------------~~~VRel~~a~r~l~~-dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 204 --------------------------TRTVRELYDAIRALLT-DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred --------------------------cHHHHHHHHHHHHhcC-CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 1124556777877753 333 245678889999999999765 46
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhH---HHHHHHHHHhhcCChhhh----
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ---IPAIKSIGSLARTFPARE---- 474 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~---~~a~~aL~~La~~~~~~~---- 474 (594)
++-...+.+|..|+ - +.+++++ +. .+ |+++.|++++.+.+....+ ..|+..|+.|+.+...+.
T Consensus 257 ~~L~~l~~tl~~lA---V-r~E~C~~-I~-e~----GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~ 326 (461)
T KOG4199|consen 257 DSLVSLSTTLKALA---V-RDEICKS-IA-ES----GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE 326 (461)
T ss_pred cHHHHHHHHHHHHH---H-HHHHHHH-HH-Hc----cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 77777888887665 3 4567774 44 33 3899999999986655554 678899999998776543
Q ss_pred hccHHHHHHhc--cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch---HhHhHHHHHHHHH
Q 040681 475 TRVIGPLVAHL--SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR---TQLHGLALEQARV 549 (594)
Q Consensus 475 ~~~i~~Lv~lL--~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~---vq~~Al~l~~~~~ 549 (594)
.|+.+.++.++ ++.++.|..+++.+++-++- +. ++|...+++.|+-...++.++-++. +|+.|..+-+.-+
T Consensus 327 ~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~L-R~---pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 327 KGGLDKIITLALRHSDDPLVIQEVMAIISILCL-RS---PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHh-cC---cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 48999999988 77889999999999998876 55 5999999999999999999996654 8888872221111
Q ss_pred ------HHH-----HhhhccccccccchHHHHHHHHHHhc
Q 040681 550 ------LTA-----LEGADRTVVAQHPELKELVSEALYHL 578 (594)
Q Consensus 550 ------l~~-----Le~~~~~~~~q~~~~~~l~~~a~~~l 578 (594)
... .|...+.-+..++..+.....|+.-|
T Consensus 403 ~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 403 VRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 111 12222223345777777777776654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=132.58 Aligned_cols=247 Identities=14% Similarity=0.141 Sum_probs=184.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+.+|+..|.+.+..+|..|++.|..+-. ...++.+.+++++.+ +.++..|+++|+.|...+..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc-----
Confidence 4457788899999999999999987753 245788888998888 99999999999999763322
Q ss_pred hcCCHHHHHHh-hcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIVNV-LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv~l-L~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...+++.|..+ ++++++.|+..|+.+|++++...... ...++..|...+.+.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~---------------------- 140 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDK---------------------- 140 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCC----------------------
Confidence 12357788877 67779999999999999996532100 011233333333322
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
+ ..++..++.+|..+ ++++ +++.|+.+|
T Consensus 141 -------------------------------------~----~~VR~~a~~aLg~~--~~~~---------ai~~L~~~L 168 (280)
T PRK09687 141 -------------------------------------S----TNVRFAVAFALSVI--NDEA---------AIPLLINLL 168 (280)
T ss_pred -------------------------------------C----HHHHHHHHHHHhcc--CCHH---------HHHHHHHHh
Confidence 1 13477788888877 3444 799999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
.+++..++..|+.+|.++. .+++ .+++.|+..|.+.+ +.|+..|+.+|+.+- ...
T Consensus 169 ~d~~~~VR~~A~~aLg~~~---~~~~---------------~~~~~L~~~L~D~~-~~VR~~A~~aLg~~~------~~~ 223 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNK---YDNP---------------DIREAFVAMLQDKN-EEIRIEAIIGLALRK------DKR 223 (280)
T ss_pred cCCCHHHHHHHHHHHhcCC---CCCH---------------HHHHHHHHHhcCCC-hHHHHHHHHHHHccC------Chh
Confidence 9999999999999997662 2232 26677888887665 999999999999975 357
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc-CCch-HhHhHH
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDR-TQLHGL 542 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~-~~~~-vq~~Al 542 (594)
++++|++.|.+++ ++..|+.||+++.. .-++|.|.+++. +.|. ++..|.
T Consensus 224 av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 224 VLSVLIKELKKGT--VGDLIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred HHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHH
Confidence 9999999998876 67899999999965 247899999997 6676 776654
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=146.52 Aligned_cols=260 Identities=17% Similarity=0.204 Sum_probs=207.8
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-----------CCHHHHHHHHHHHHHhhC-ChhHHHHHH-hcCC
Q 040681 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-----------ASSEAQSAAATALYNIAN-DQERVRVIV-SELG 241 (594)
Q Consensus 175 ~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-----------~~~~v~e~A~~aL~~La~-~~~~~~~iv-~~g~ 241 (594)
.|+..|..+.++ +++|+.+-+.|++..+-.||... .+..++..|..+|.||.. |..++..++ .-|.
T Consensus 317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 566778888877 99999999999999888877431 124688999999999997 555787777 6789
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHh-hhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTL-LSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+..+|..|.+.+.++.+..+.+|.||+-+ |...+..+.+.|-+..|+.. +....
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k------------------------ 451 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK------------------------ 451 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc------------------------
Confidence 99999999999999999999999999976 43467777778888877764 22220
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHh-hCcHHHHHHHhhh
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISE-TKGLLCLAKLVEK 398 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e-~g~l~~L~~LL~~ 398 (594)
|+ .......|||||+....+|+..|+. .|++..|+.+|..
T Consensus 452 -------------------------------Es--------TLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY 492 (2195)
T KOG2122|consen 452 -------------------------------ES--------TLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSY 492 (2195)
T ss_pred -------------------------------cc--------hHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccc
Confidence 01 1234678999998777888888875 6889999999975
Q ss_pred C----CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 399 E----QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 399 ~----~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
. .-.+.+++-++|.|.+..-..+.+.|+ +...++ ++..|+..|+++. -.+...+|++||||+...+..|
T Consensus 493 ~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ-ILR~~N-----CLq~LLQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQ 565 (2195)
T KOG2122|consen 493 EGQSNTLAIIESAGGILRNVSSLIATCEDYRQ-ILRRHN-----CLQTLLQHLKSHS-LTIVSNACGTLWNLSARSPEDQ 565 (2195)
T ss_pred cCCcchhhhhhcCccHHHHHHhHhhccchHHH-HHHHhh-----HHHHHHHHhhhcc-eEEeecchhhhhhhhcCCHHHH
Confidence 4 246778899999998866556667777 344444 8999999999987 8899999999999997666544
Q ss_pred h-----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 475 T-----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 ~-----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
. |+++.|..++++++..+.+-++.||.|+..
T Consensus 566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 3 899999999999999999999999999865
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.7e-12 Score=126.10 Aligned_cols=252 Identities=14% Similarity=0.093 Sum_probs=185.0
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
-.++.|+.+|.+.+ ..++..|+++|+.+.. ..+++.+..+++++++.+|..++++|+.|-.... .
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 35889999999988 9999999999998865 3467888899999999999999999999954221 1
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
...+++.|..++.++. +
T Consensus 88 --~~~a~~~L~~l~~~D~---d---------------------------------------------------------- 104 (280)
T PRK09687 88 --QDNVFNILNNLALEDK---S---------------------------------------------------------- 104 (280)
T ss_pred --hHHHHHHHHHHHhcCC---C----------------------------------------------------------
Confidence 1225666766643331 1
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
..++..|+.+|++++...... ...++..+..++.+++..|+..++++|.++. ++
T Consensus 105 -~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----~~--------------- 158 (280)
T PRK09687 105 -ACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----DE--------------- 158 (280)
T ss_pred -HHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----CH---------------
Confidence 135788999999986433211 1225666777788889999999999996542 21
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHH
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKA 517 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~ 517 (594)
..++.|+.+|++.+ +.|+..|+.+||.+.. ....+++.|+.+|.+.+.+|+.+|+++|+++-.
T Consensus 159 ~ai~~L~~~L~d~~-~~VR~~A~~aLg~~~~----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~------------ 221 (280)
T PRK09687 159 AAIPLLINLLKDPN-GDVRNWAAFALNSNKY----DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD------------ 221 (280)
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCC----CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC------------
Confidence 26788999998766 8899999999999932 123688999999999999999999999999743
Q ss_pred HHHcCChHHHHHhccCCchHhHh---HH-HHHHHHHHHHHhhhcc-ccccccchHHHHHHHHHHh
Q 040681 518 IIEFNAVPPLMRLLRGNDRTQLH---GL-ALEQARVLTALEGADR-TVVAQHPELKELVSEALYH 577 (594)
Q Consensus 518 i~~~g~i~~Lv~lL~~~~~vq~~---Al-~l~~~~~l~~Le~~~~-~~~~q~~~~~~l~~~a~~~ 577 (594)
..++++|++.|..++. +.. || ++...+++..|....+ .. |+.++.-..+|++.
T Consensus 222 ---~~av~~Li~~L~~~~~-~~~a~~ALg~ig~~~a~p~L~~l~~~~~---d~~v~~~a~~a~~~ 279 (280)
T PRK09687 222 ---KRVLSVLIKELKKGTV-GDLIIEAAGELGDKTLLPVLDTLLYKFD---DNEIITKAIDKLKR 279 (280)
T ss_pred ---hhHHHHHHHHHcCCch-HHHHHHHHHhcCCHhHHHHHHHHHhhCC---ChhHHHHHHHHHhc
Confidence 3589999999998774 333 33 5555667777763322 22 67777666666553
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.1e-11 Score=120.66 Aligned_cols=300 Identities=13% Similarity=0.050 Sum_probs=218.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC------CHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA------SSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~------~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+...+.|.++..+..++|+|+|.+|+++|..+.+.||-..++..|+... +.+...-+...|.|-.. +++.+.
T Consensus 93 rq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~a 172 (604)
T KOG4500|consen 93 RQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRA 172 (604)
T ss_pred HhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 33446778899999999999999999999999999999888888886531 13455556678888776 556799
Q ss_pred HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 235 VIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
++++.|+++.|+..+.-+ +....+.......||.+.- +-....+.++.....|+.+|......
T Consensus 173 q~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~-------------- 238 (604)
T KOG4500|consen 173 QVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE-------------- 238 (604)
T ss_pred HHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc--------------
Confidence 999999999999988755 6677777776666665431 11234445566667777777544210
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
....++...|...+ .++.++-.+++.|.+.+
T Consensus 239 ------------------------------------------------d~~eM~feila~~a-end~Vkl~la~~gl~e~ 269 (604)
T KOG4500|consen 239 ------------------------------------------------DIDEMIFEILAKAA-ENDLVKLSLAQNGLLED 269 (604)
T ss_pred ------------------------------------------------chhhHHHHHHHHHh-cCcceeeehhhcchHHH
Confidence 12344566777775 68899999999999999
Q ss_pred HHHHhhhCCH-HHH-------HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 392 LAKLVEKEQG-ELQ-------FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 392 L~~LL~~~~~-~v~-------~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
+..+++.-.. .-+ ..++....-|. .++..++. .+. . +.+++.++..++|.+ .+.+..+.-+|
T Consensus 270 ~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll---tGDeSMq~-L~~--~---p~~l~~~~sw~~S~d-~~l~t~g~Lai 339 (604)
T KOG4500|consen 270 SIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL---TGDESMQK-LHA--D---PQFLDFLESWFRSDD-SNLITMGSLAI 339 (604)
T ss_pred HHHHHHhcccccchHHHHHHHHhhhhHhhhhh---cCchHHHH-Hhc--C---cHHHHHHHHHhcCCc-hhHHHHHHHHH
Confidence 9999986221 111 11222222222 45655666 232 1 348899999998776 88999999999
Q ss_pred HHhhcCChhh----hhccHHHHHHhc-----cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 464 GSLARTFPAR----ETRVIGPLVAHL-----SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 464 ~~La~~~~~~----~~~~i~~Lv~lL-----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
||++|+.... +.+++..|+.+| -+++.+++..++.||+|++. ++.++..++.+|..+.++..++..
T Consensus 340 gNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I-----Pv~nka~~~~aGvteaIL~~lk~~ 414 (604)
T KOG4500|consen 340 GNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI-----PVSNKAHFAPAGVTEAILLQLKLA 414 (604)
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc-----cCCchhhccccchHHHHHHHHHhc
Confidence 9999987754 448899999988 35788899999999999987 356788899999999999999976
Q ss_pred ch-HhH
Q 040681 535 DR-TQL 539 (594)
Q Consensus 535 ~~-vq~ 539 (594)
.+ ++.
T Consensus 415 ~ppv~f 420 (604)
T KOG4500|consen 415 SPPVTF 420 (604)
T ss_pred CCcchH
Confidence 55 543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-11 Score=118.17 Aligned_cols=187 Identities=20% Similarity=0.205 Sum_probs=159.8
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
+..++..|+ +.|+..+..|..++.+.+.. +.++..|.+.|+++.+..+|..++ +.+++.|+++|.|++.+.+++..|
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPN-PSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCC-hHHHHHHHHHHHhcCCChhhHHHH
Confidence 456788887 56899999999999998866 899999999999999999999998 999999999999999999998887
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
-. .++.+++...+. +.++|..+..+|.+|+..+ +.+..+.. .++.|+.+|..++
T Consensus 92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~~--~i~~ll~LL~~G~------------------- 147 (254)
T PF04826_consen 92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLAN--YIPDLLSLLSSGS------------------- 147 (254)
T ss_pred HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHHh--hHHHHHHHHHcCC-------------------
Confidence 43 577777765554 7899999999999998754 56777754 7999999998873
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
..++..+.++|.||+ .++...+.+...+++..|+.
T Consensus 148 --------------------------------------------~~~k~~vLk~L~nLS-~np~~~~~Ll~~q~~~~~~~ 182 (254)
T PF04826_consen 148 --------------------------------------------EKTKVQVLKVLVNLS-ENPDMTRELLSAQVLSSFLS 182 (254)
T ss_pred --------------------------------------------hHHHHHHHHHHHHhc-cCHHHHHHHHhccchhHHHH
Confidence 134677899999996 58888899999999999999
Q ss_pred HhhhC-CHHHHHHHHHHHHHHH
Q 040681 395 LVEKE-QGELQFNCLMTIMEIT 415 (594)
Q Consensus 395 LL~~~-~~~v~~~A~~aL~nL~ 415 (594)
|+.+. +.++...+.....||.
T Consensus 183 Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 183 LFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HHccCCccHHHHHHHHHHHHHH
Confidence 99875 5778888999999996
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.7e-10 Score=121.68 Aligned_cols=309 Identities=16% Similarity=0.201 Sum_probs=233.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
...+...|++.++.+|..+++.|++++.+++.....+.+.+.++.++.+|.+++ ..+...|+.+|.+|+.++..-..++
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD-LSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc-HHHHHHHHHHHHHHhCCchhHHHHh
Confidence 344667889999999999999999999988777888889999999999999998 9999999999999999888888898
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
..+.++.|..++...+..+|-++.+++.+++..+++....+.+.|.++.++..|.++ |.
T Consensus 158 ~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d----Di----------------- 216 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD----DI----------------- 216 (503)
T ss_pred CcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc----cH-----------------
Confidence 999999999999988888999999999999999999999999999999999988764 21
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
-++.+++..|..|+. .+...+.+.+.|+++.|..++.
T Consensus 217 ------------------------------------------Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~ 253 (503)
T PF10508_consen 217 ------------------------------------------LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQ 253 (503)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHh
Confidence 247788999999987 6777999999999999999997
Q ss_pred hCCHHH-----HH-HHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 398 KEQGEL-----QF-NCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 398 ~~~~~v-----~~-~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
..+.+. -. .......+++.. ....+.. ..+.+++.|...+.+.+ +..+..|.-++|.++.+..
T Consensus 254 ~~~~dp~~~~~~l~g~~~f~g~la~~--~~~~v~~--------~~p~~~~~l~~~~~s~d-~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 254 DSEEDPRLSSLLLPGRMKFFGNLARV--SPQEVLE--------LYPAFLERLFSMLESQD-PTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred ccccCCcccchhhhhHHHHHHHHHhc--ChHHHHH--------HHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHhCCHH
Confidence 543322 11 122344444422 2222222 13557778888887766 8899999999999997665
Q ss_pred hhhh----------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhh----HHHHH---HcCChH-HHHHhccC
Q 040681 472 ARET----------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEH----SKAII---EFNAVP-PLMRLLRG 533 (594)
Q Consensus 472 ~~~~----------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~----~~~i~---~~g~i~-~Lv~lL~~ 533 (594)
..+. .++..+-....++..+++..+..+|.++...++.-+.+. .+.+. ..+... .++.+++.
T Consensus 323 G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~q 402 (503)
T PF10508_consen 323 GKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQ 402 (503)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 4322 234444445577888999999999999943222101121 22222 223333 56677776
Q ss_pred C-chHhHhHH
Q 040681 534 N-DRTQLHGL 542 (594)
Q Consensus 534 ~-~~vq~~Al 542 (594)
+ +++|.+|+
T Consensus 403 PF~elr~a~~ 412 (503)
T PF10508_consen 403 PFPELRCAAY 412 (503)
T ss_pred CchHHHHHHH
Confidence 6 34888777
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-10 Score=130.89 Aligned_cols=236 Identities=19% Similarity=0.178 Sum_probs=146.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..|+..|.+.++.+|..|+..|..+.. .+.++.|+++|++++ +.++..|+.+|..+....
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc-------
Confidence 4457778888999999999999987642 356888999998887 999999999998875421
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
...+.|...|++.++.||..++.+|..+...+ ...|+..|.+..
T Consensus 684 --~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d---------------------- 727 (897)
T PRK13800 684 --PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPD---------------------- 727 (897)
T ss_pred --CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCC----------------------
Confidence 12357778888888999999988888764211 234556664441
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..++..|+.+|..+ +. .+.|..++.
T Consensus 728 -----------------------------------------~~VR~~Av~aL~~~--~~------------~~~l~~~l~ 752 (897)
T PRK13800 728 -----------------------------------------HRVRIEAVRALVSV--DD------------VESVAGAAT 752 (897)
T ss_pred -----------------------------------------HHHHHHHHHHHhcc--cC------------cHHHHHHhc
Confidence 02344455555543 11 123445566
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~ 477 (594)
+++.+++..++.+|..+. .... ..++.|+.++++.+ +.++..|+.+|+++.. ....
T Consensus 753 D~~~~VR~~aa~aL~~~~---~~~~---------------~~~~~L~~ll~D~d-~~VR~aA~~aLg~~g~-----~~~~ 808 (897)
T PRK13800 753 DENREVRIAVAKGLATLG---AGGA---------------PAGDAVRALTGDPD-PLVRAAALAALAELGC-----PPDD 808 (897)
T ss_pred CCCHHHHHHHHHHHHHhc---cccc---------------hhHHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----cchh
Confidence 666666666666665442 1110 02344555555444 6666666666666642 1123
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++.++..|.+.++.|+..|+.+|..+.. ...++.|+.+|...+. |++.|+
T Consensus 809 ~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 809 VAAATAALRASAWQVRQGAARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHH
Confidence 3556666666666666666666666533 1245666666666555 666554
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=132.06 Aligned_cols=304 Identities=16% Similarity=0.177 Sum_probs=221.6
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHh----------hccC------CCHHHHH-
Q 040681 158 VWSYIAAIQM---GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKL----------LKET------ASSEAQS- 217 (594)
Q Consensus 158 i~~lv~~L~~---~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~L----------L~~~------~~~~v~e- 217 (594)
+.-|+.+|+- ++.+.+..|-.+|.|+...+++-+..=.+.-+++.|=++ |... .+.+-+.
T Consensus 237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lc 316 (2195)
T KOG2122|consen 237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLC 316 (2195)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhH
Confidence 3346777764 356788889999999998777665544444444444321 2221 1234444
Q ss_pred HHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcC-----------C-CHHHHHHHHHHHHHHhhcCHHhHHHHHH-cCCh
Q 040681 218 AAATALYNIANDQERVRVIVSELGVPTIVNVLSD-----------S-IMKVQIQVASLVARMAEHDALAQDDFAR-ENVI 284 (594)
Q Consensus 218 ~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~-----------~-~~~v~~~aa~aL~~La~~~~~~~~~i~~-~g~i 284 (594)
.|+.+|..++.|+++|..+.+.|++..+..+|.- + .-.+|..+..+|.||...+..++..++. -|++
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 7888999999999999999999999999887732 1 3468999999999999887777766654 5789
Q ss_pred hhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHH
Q 040681 285 RPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIA 364 (594)
Q Consensus 285 ~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~ 364 (594)
+.+|..|.+.. +++...
T Consensus 397 eavVAQL~s~p---------------------------------------------------------------eeL~QV 413 (2195)
T KOG2122|consen 397 EAVVAQLISAP---------------------------------------------------------------EELLQV 413 (2195)
T ss_pred HHHHHHHhcCh---------------------------------------------------------------HHHHHH
Confidence 99999887652 123444
Q ss_pred HHHHHHHhc-cCChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHH
Q 040681 365 CAEALWMLA-RGSVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQ 442 (594)
Q Consensus 365 a~~aL~~L~-~~~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~ 442 (594)
.+.+|+||+ +.+...++.+-+.|-+..|+... +...+......+.||+||++=+..|. . .|.. +.+.+..
T Consensus 414 ~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK---A-~iCa----VDGALaF 485 (2195)
T KOG2122|consen 414 YASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK---A-EICA----VDGALAF 485 (2195)
T ss_pred HHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc---h-hhhc----ccchHHH
Confidence 578899987 33344466777889998888774 55555666778999999985444442 3 3443 2346677
Q ss_pred HHHHHhcCC---ChhhHHHHHHHHHHhhcCChhhh--------hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccc
Q 040681 443 LLRVINDLD---SPTLQIPAIKSIGSLARTFPARE--------TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLC 511 (594)
Q Consensus 443 Ll~lL~s~~---~~~v~~~a~~aL~~La~~~~~~~--------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~ 511 (594)
|+..|.... ...+.+.+-++|+|.+.....++ ...+..|++.|++.+..+..++|.+|+||.. .+
T Consensus 486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA-R~--- 561 (2195)
T KOG2122|consen 486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RS--- 561 (2195)
T ss_pred HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc-CC---
Confidence 777776442 25678899999999886433222 2678999999999999999999999999988 55
Q ss_pred hhhHHHHHHcCChHHHHHhccCCch
Q 040681 512 TEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 512 ~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
++.++.+.+.|+|+.|..|+++.+.
T Consensus 562 p~DQq~LwD~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 562 PEDQQMLWDDGAVPMLRNLIHSKHK 586 (2195)
T ss_pred HHHHHHHHhcccHHHHHHHHhhhhh
Confidence 5889999999999999999998765
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-09 Score=114.99 Aligned_cols=299 Identities=18% Similarity=0.228 Sum_probs=219.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH-HHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER-VRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~-~~~iv~~ 239 (594)
++..|++.+.+....+...|..+...- ....+ ..+..+.|...|.+++ +.++..+++.|++++.+.+. ...+.+.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 566777777777777777787776542 22222 4577888999999998 99999999999999986665 5666689
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+.++.++.+|.+++..+...|+.+|.+|+.+.+ ....+...+.+..|..++...+ +
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~---~-------------------- 174 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSS---D-------------------- 174 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccC---H--------------------
Confidence 999999999999999999999999999998764 4445657777888888876631 1
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
.++..+..++.+++..+++....+.+.|.++.+++.|.++
T Consensus 175 ----------------------------------------~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d 214 (503)
T PF10508_consen 175 ----------------------------------------IVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD 214 (503)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc
Confidence 1244467778889888889888999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCCh----hhHHHHH-HHHHHhhcCChhhh
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSP----TLQIPAI-KSIGSLARTFPARE 474 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~----~v~~~a~-~aL~~La~~~~~~~ 474 (594)
|.-+|.+++..|..|+ + .+.-.+ |..+.| +++.|..++.....+ .+..+.. +..++++...+..-
T Consensus 215 DiLvqlnalell~~La---~-~~~g~~--yL~~~g----i~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 215 DILVQLNALELLSELA---E-TPHGLQ--YLEQQG----IFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred cHHHHHHHHHHHHHHH---c-ChhHHH--HHHhCC----HHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 8889999999999887 3 333334 344443 888888888765432 2344444 88999997543322
Q ss_pred h----ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH-HHc-CChHHHHHh----ccCCch-HhHhHH
Q 040681 475 T----RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI-IEF-NAVPPLMRL----LRGNDR-TQLHGL 542 (594)
Q Consensus 475 ~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i-~~~-g~i~~Lv~l----L~~~~~-vq~~Al 542 (594)
. .++..|.+++.+.++..+.-|..+++.+++ +.+....+ ... +.+++.++. ...+.. +|..++
T Consensus 285 ~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-----t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 285 LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-----TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-----CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 2 345566666788999999999999999977 35666666 333 244444443 334443 666655
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=102.28 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=93.7
Q ss_pred HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 193 IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 193 ~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.+++.|+|+.|+++|++++ ..+++.++++|++++.+ ++.+..+++.|++|.++++|.+++++++..++|+|++|+.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3678999999999999998 99999999999999986 788999999999999999999999999999999999999988
Q ss_pred HHhHHHHHHcCChhhHHHhhhcC
Q 040681 272 ALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 272 ~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+..+..+.+.|+++.|++++..+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC
Confidence 77888888999999999999765
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=102.47 Aligned_cols=111 Identities=29% Similarity=0.418 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-hHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ-ERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~~~~~i 236 (594)
+..++..|+.++...+..|+++|.+++.+++.++..+++.|++|.|+++|.+++ +.++..++++|+||+.+. ..+..+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-HHHHHHHHHHHHHHccCcHHHHHHH
Confidence 455778889999999999999999999998999999999999999999999988 999999999999999865 567778
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
++.|+++.|+++|.+++.++++.++++|.+|++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 899999999999999999999999999999974
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.5e-09 Score=123.60 Aligned_cols=237 Identities=18% Similarity=0.169 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..|+..|..++..+|..|+.+|..+...- ...+.|...|++++ +.++..|+.+|+.+..
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d-~~VR~~A~~aL~~~~~--------- 713 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPD-PVVRAAALDVLRALRA--------- 713 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCC-HHHHHHHHHHHHhhcc---------
Confidence 344777888889999999999998774321 22467888999887 9999999999998753
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+....|++.|++.++.||..|+.+|..+- . .+.|..++.++.
T Consensus 714 --~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--~------------~~~l~~~l~D~~---------------------- 755 (897)
T PRK13800 714 --GDAALFAAALGDPDHRVRIEAVRALVSVD--D------------VESVAGAATDEN---------------------- 755 (897)
T ss_pred --CCHHHHHHHhcCCCHHHHHHHHHHHhccc--C------------cHHHHHHhcCCC----------------------
Confidence 22456788999999999999999998762 1 234555554431
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..++..++.+|..+..... ..++.|..++.
T Consensus 756 -----------------------------------------~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~ 785 (897)
T PRK13800 756 -----------------------------------------REVRIAVAKGLATLGAGGA---------PAGDAVRALTG 785 (897)
T ss_pred -----------------------------------------HHHHHHHHHHHHHhccccc---------hhHHHHHHHhc
Confidence 1357788999998843222 24788999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~ 477 (594)
++++.++..|+.+|.++. . .+ .++..++..|.+.+ +.|+..|+.+|+.+. ....
T Consensus 786 D~d~~VR~aA~~aLg~~g---~-~~---------------~~~~~l~~aL~d~d-~~VR~~Aa~aL~~l~------~~~a 839 (897)
T PRK13800 786 DPDPLVRAAALAALAELG---C-PP---------------DDVAAATAALRASA-WQVRQGAARALAGAA------ADVA 839 (897)
T ss_pred CCCHHHHHHHHHHHHhcC---C-cc---------------hhHHHHHHHhcCCC-hHHHHHHHHHHHhcc------ccch
Confidence 999999999999997653 1 11 13345667776654 899999999999886 2356
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++.|+.+|++.++.||++|+++|..+.. + ....+.|.++|...+. |+..|.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~~~--~------------~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRWPG--D------------PAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccCC--C------------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 8999999999999999999999999732 2 1246788888988887 887764
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.4e-09 Score=108.19 Aligned_cols=338 Identities=14% Similarity=0.094 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC--CCHHHHHHHHHHHHHhhCC-hhH-HHHHHhcCCHHHHH
Q 040681 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET--ASSEAQSAAATALYNIAND-QER-VRVIVSELGVPTIV 246 (594)
Q Consensus 171 ~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~-~~~-~~~iv~~g~i~~Lv 246 (594)
+.-.-+..-|.|...+++.++..+++.|.++.|..++.-+ + .+..+......+||... .+. .....+......++
T Consensus 151 ~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qN-aa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~ 229 (604)
T KOG4500|consen 151 EYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQN-AALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLL 229 (604)
T ss_pred HHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhccccc-HHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHH
Confidence 3344455678899999999999999999999999988654 4 66777777777777763 333 45555677788889
Q ss_pred HhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC-Cc--CCCccCccchhhHHHHHHHhhhhccc
Q 040681 247 NVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE-TF--VDDPRANSGKQSIHTIVQINKEMEKN 322 (594)
Q Consensus 247 ~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~--~~~~~~v~~~~si~~l~l~~~~~~~~ 322 (594)
++|.+. .+++.+.+..+|...+.++ ..+-.+++.|.+..++++++.- +. ..+..+....-+-+.+ +-. .+++
T Consensus 230 ~ll~~~v~~d~~eM~feila~~aend-~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~v-lll--tGDe 305 (604)
T KOG4500|consen 230 QLLPSMVREDIDEMIFEILAKAAEND-LVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDV-LLL--TGDE 305 (604)
T ss_pred HHHHHhhccchhhHHHHHHHHHhcCc-ceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhh-hhh--cCch
Confidence 999877 8899999999999999976 6888899999999999998762 11 1110000000000000 000 1110
Q ss_pred c--cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh--
Q 040681 323 S--FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-- 398 (594)
Q Consensus 323 ~--~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-- 398 (594)
. +-+.+. .++ +.-+.+-|++...+...+.-+++|+++ ++++|..+++.|.+..|+.+|..
T Consensus 306 SMq~L~~~p--~~l-------------~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~ 369 (604)
T KOG4500|consen 306 SMQKLHADP--QFL-------------DFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEK 369 (604)
T ss_pred HHHHHhcCc--HHH-------------HHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 000000 000 001111122224567888999999986 68889999999999999999964
Q ss_pred ---CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh--h
Q 040681 399 ---EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA--R 473 (594)
Q Consensus 399 ---~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~--~ 473 (594)
++-++|..++.+|.|+. ++..| ++.|.+ . |+++.++..++.+. +.++..-.++++.+-...+. .
T Consensus 370 ~vdgnV~~qhA~lsALRnl~-IPv~n----ka~~~~-a----GvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~ 438 (604)
T KOG4500|consen 370 DVDGNVERQHACLSALRNLM-IPVSN----KAHFAP-A----GVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIAC 438 (604)
T ss_pred CCCccchhHHHHHHHHHhcc-ccCCc----hhhccc-c----chHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHH
Confidence 44578999999999985 44444 323442 2 37788888888777 77887788888877754441 1
Q ss_pred hh----ccHHHHHHhccCCCH-HHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 474 ET----RVIGPLVAHLSHRNQ-EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 474 ~~----~~i~~Lv~lL~~~~~-~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+. ..+..||.--++++. +|..|.-+.|.-+.. ..+ ..+-..++.+.|||++++.++....- +|.+|+
T Consensus 439 eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk-Hs~-~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEal 511 (604)
T KOG4500|consen 439 ELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK-HSK-YKDVILTVPKSGGIKEKVSMFTKNHINMQNEAL 511 (604)
T ss_pred HHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH-hhH-hhhhHhhccccccHHHHHHHHHHhhHHHhHHHH
Confidence 22 335555555566555 499999999888876 211 13445667799999999999998777 888887
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-08 Score=104.52 Aligned_cols=289 Identities=18% Similarity=0.179 Sum_probs=212.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
|--||..|...+.+.-.-....|..++.. ++|+..+.+.|.|..|++++.... ++++......|.|++.|...|..++
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccccccccHHHh
Confidence 44467777777767666677778888877 789999999999999999999988 9999999999999999999999999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
..|.+|.|+.+|.+... ..-|...|+.|+.++ ..+..|+...+|+.|.+.+-.++... +
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~-------------v----- 442 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSE-------------V----- 442 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCce-------------e-----
Confidence 99999999999987632 344777888888855 79999999999999999776653111 0
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
. ....+- --|||. +..+.+.+++..++..|+..--
T Consensus 443 ------------------------------------------d-l~lia~-ciNl~l-nkRNaQlvceGqgL~~LM~ra~ 477 (791)
T KOG1222|consen 443 ------------------------------------------D-LALIAL-CINLCL-NKRNAQLVCEGQGLDLLMERAI 477 (791)
T ss_pred ------------------------------------------c-HHHHHH-HHHHHh-ccccceEEecCcchHHHHHHHh
Confidence 0 110111 136753 5666778888888988887654
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh----
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR---- 473 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~---- 473 (594)
...+.+.. ..+.||+ .+....+. .|.. -|..|.++++..++...-..|+++++||.-+.-.-
T Consensus 478 k~~D~lLm---K~vRniS---qHeg~tqn-~Fid-------yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~il 543 (791)
T KOG1222|consen 478 KSRDLLLM---KVVRNIS---QHEGATQN-MFID-------YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKIL 543 (791)
T ss_pred cccchHHH---HHHHHhh---hccchHHH-HHHH-------HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHH
Confidence 33333333 4455665 33333455 3442 56778888888777778889999999998643221
Q ss_pred -hhccHHHHHHhccC--CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC
Q 040681 474 -ETRVIGPLVAHLSH--RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533 (594)
Q Consensus 474 -~~~~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~ 533 (594)
....+|-+-..|.. ...+.+.+.+.+++.++++ ......+..+|.|+.|++||..
T Consensus 544 q~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-----~~cA~Lla~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 544 QSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-----LDCARLLAPAKLIDTLIELLQA 601 (791)
T ss_pred hhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-----hHHHHHhCccccHHHHHHHHHh
Confidence 12667877777754 4567888999999998882 2344555688999999999984
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.7e-08 Score=97.49 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=159.6
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHH
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPT 244 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~ 244 (594)
++.+++.+..|+..|..++.+ =.|...++..||..+|+.+|++++ ..+++.|+++|+..+. ++.....+++.|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~-~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSD-AELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 456889999999999999865 788899999999999999999998 9999999999999998 7889999999999999
Q ss_pred HHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccc
Q 040681 245 IVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNS 323 (594)
Q Consensus 245 Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~ 323 (594)
|+.+|.+. +..++.+|..+++.|-.+++..+..|...+|...|...+++++ ++
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~----------------------- 224 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TS----------------------- 224 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cc-----------------------
Confidence 99999866 7778999999999999999999999999999999999998863 11
Q ss_pred cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHH
Q 040681 324 FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGEL 403 (594)
Q Consensus 324 ~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v 403 (594)
..+++.++..+..+...+...+..+...+....+..+....+.++
T Consensus 225 -----------------------------------~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~ 269 (342)
T KOG2160|consen 225 -----------------------------------VKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEV 269 (342)
T ss_pred -----------------------------------hHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhh
Confidence 134566677788877666666776667777788888888888899
Q ss_pred HHHHHHHHHHHH
Q 040681 404 QFNCLMTIMEIT 415 (594)
Q Consensus 404 ~~~A~~aL~nL~ 415 (594)
.+.+..++..+.
T Consensus 270 ~e~~l~~~l~~l 281 (342)
T KOG2160|consen 270 NEAALTALLSLL 281 (342)
T ss_pred hHHHHHHHHHHH
Confidence 998888876543
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.87 E-value=6e-07 Score=95.22 Aligned_cols=278 Identities=19% Similarity=0.174 Sum_probs=189.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
++..|+.+|.-....|+..|..+..............-.+..|...|+++++...+.-++.+|..|...++.|..+.+.+
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 45577778888888999998888764333211111111234556666665447888889999999999999999999999
Q ss_pred CHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 241 GVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 241 ~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
++++|+.+|+.. +..++-.+.-+++-|+-+ +.....+...+.|+.|+++++...
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~----------------------- 241 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLKRLSLIQDLSDILKEST----------------------- 241 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhccccHHHHHHHHHHhhh-----------------------
Confidence 999999999864 567888999999999874 456667777889999999986541
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC------hhhHHHHHhhCcHHHH
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS------VANSRRISETKGLLCL 392 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~------~~~~~~i~e~g~l~~L 392 (594)
|.++.+.+..+|+|+...+ ......+++.|.++.+
T Consensus 242 ---------------------------------------KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l 282 (429)
T cd00256 242 ---------------------------------------KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTL 282 (429)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHH
Confidence 2355677888899986422 2234556666666655
Q ss_pred HHHhhh--CCHHHHHHHHHH--------HHHHHHHhcCCHHHHHH-------------------hhhcCChhhHHHHHHH
Q 040681 393 AKLVEK--EQGELQFNCLMT--------IMEITAAAESNADLRRA-------------------AFKTNSPAAKAVVDQL 443 (594)
Q Consensus 393 ~~LL~~--~~~~v~~~A~~a--------L~nL~~~~~~~~~~r~~-------------------~~~~~~~~~~~~v~~L 443 (594)
-.|... +|+++... ... +..+++..+.-.++... -|..+. -.++..|
T Consensus 283 ~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~---~~llk~L 358 (429)
T cd00256 283 QSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKN---YELLKIL 358 (429)
T ss_pred HHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcc---hHHHHHH
Confidence 444433 34444331 111 12222221111111110 022222 3578899
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 444 LRVINDLDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 444 l~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++|..++++.+..-||-=||.+++..|... .|+=..+.++|.+.+++|+.+|..++.++..
T Consensus 359 ~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 359 IHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999766668888999999999998765432 2777888999999999999999999998854
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-06 Score=88.28 Aligned_cols=142 Identities=14% Similarity=0.199 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 212 SSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 212 ~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
+.+-++.|..-|-.++.+-++-..++..||..+++..|++++..+|+.|+|+|+..++++|.+|..+.+.|+.+.|+..|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 37888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHH
Q 040681 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 292 ~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
.+..+. ..+..|..|+..
T Consensus 176 s~~~~~--------------------------------------------------------------~~r~kaL~Aiss 193 (342)
T KOG2160|consen 176 SSDDPN--------------------------------------------------------------TVRTKALFAISS 193 (342)
T ss_pred ccCCCc--------------------------------------------------------------hHHHHHHHHHHH
Confidence 855210 125567888888
Q ss_pred hccCChhhHHHHHhhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHH
Q 040681 372 LARGSVANSRRISETKGLLCLAKLVEKE--QGELQFNCLMTIMEIT 415 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~ 415 (594)
+-+.++..+..+...++..+|...|+++ +..+|..++..+.++.
T Consensus 194 LIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 194 LIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 8788888888898899999999999985 4567788888898887
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-06 Score=96.26 Aligned_cols=238 Identities=13% Similarity=0.174 Sum_probs=174.0
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHh-hccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 158 VWSYIAAIQMG-QLSDRIEAAIELASL-AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~-~~~~~~~Aa~~L~~l-a~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
+-+|+.-|+.. |+..+.+|+..|..+ ..+|++.-..+--.-.||.|+.||+...+.+++..|++||.+|+. -|.+..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 45577777765 888899999888754 445665555444556799999999987669999999999999998 788899
Q ss_pred HHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 235 VIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
.+|+.++||.|+.-|.. .-+++-|++..+|-.|+..++ .++.++|++-..+..|.+-+ +
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFS-------------i---- 308 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFS-------------I---- 308 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHH-------------H----
Confidence 99999999999986654 489999999999999998654 45668999998888886542 1
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETKGLLCL 392 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L 392 (594)
..++.|...-.|+|.. .++--..++| ++|.|
T Consensus 309 ----------------------------------------------~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL 340 (1051)
T KOG0168|consen 309 ----------------------------------------------HAQRVALAIAANCCKSIRSDEFHFVME--ALPLL 340 (1051)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHhcCCCccchHHHH--HHHHH
Confidence 1255566666676632 1222344444 79999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC---hhhHHHHHHHHHHhhcC
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS---PTLQIPAIKSIGSLART 469 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~---~~v~~~a~~aL~~La~~ 469 (594)
..+|...+....++++.+++.|+..+.+.++.-+. +. ..+++.....+|.-.+. ..+....++.|..+|..
T Consensus 341 ~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~-----s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 341 TPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LC-----SHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-Hh-----chhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 99999999999999999999998888777765552 22 23467766666654331 23344555666666644
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-06 Score=93.00 Aligned_cols=100 Identities=19% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
.+..+.+.+...|+-+--++..+...+++.... .+..|.+=|.+++ +.++..|+++|++++ +++-.+.+
T Consensus 47 vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~-~~~~~~~l---- 115 (526)
T PF01602_consen 47 VIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPN-PYIRGLALRTLSNIR-TPEMAEPL---- 115 (526)
T ss_dssp HHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSS-HHHHHHHHHHHHHH--SHHHHHHH----
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCC-HHHHHHHHhhhhhhc-ccchhhHH----
Confidence 333444555555555555555555444432111 2444555555555 666666666666655 22222222
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
++.+.++|.++++.||..|+.++.++...+|
T Consensus 116 -~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 116 -IPDVIKLLSDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHhcCCchHHHHHHHHHHHHHhccCH
Confidence 4555666666666666666666666655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-06 Score=85.06 Aligned_cols=274 Identities=16% Similarity=0.133 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS 252 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~ 252 (594)
-+.|..-|.|++.+ -..-..++....|..||+.|...+ .++.......|..|+-..+++..+.+.|.+..|+++....
T Consensus 280 Lrva~ylLlNlAed-~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 280 LRVAVYLLLNLAED-ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 34566778899865 555566778889999999999988 8898899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCccc
Q 040681 253 IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRP 332 (594)
Q Consensus 253 ~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~ 332 (594)
.++++......|.||+..+ ..+..+++.|.+|.|+.+|.+++ +
T Consensus 358 h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~---~--------------------------------- 400 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDT---K--------------------------------- 400 (791)
T ss_pred CHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcc---c---------------------------------
Confidence 9999999999999999854 78888889999999999998773 1
Q ss_pred ccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCC-HHHHHHHHHHH
Q 040681 333 YLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ-GELQFNCLMTI 411 (594)
Q Consensus 333 L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~-~~v~~~A~~aL 411 (594)
+..|...|..++ .++..+..++-..+++.+.+.+-++. .++-..-...-
T Consensus 401 -----------------------------~~iA~~~lYh~S-~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~c 450 (791)
T KOG1222|consen 401 -----------------------------HGIALNMLYHLS-CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALC 450 (791)
T ss_pred -----------------------------chhhhhhhhhhc-cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHH
Confidence 223566677885 46777777888889999998876554 34433322233
Q ss_pred HHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHH-HHhcCCChhhHHHHHHHHHHhhcCChhhhh---ccHHHHHHhccC
Q 040681 412 MEITAAAESNADLRRAAFKTNSPAAKAVVDQLLR-VINDLDSPTLQIPAIKSIGSLARTFPARET---RVIGPLVAHLSH 487 (594)
Q Consensus 412 ~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~-lL~s~~~~~v~~~a~~aL~~La~~~~~~~~---~~i~~Lv~lL~~ 487 (594)
.||| +...|. + ++... .+++.|++ .+++.+ . .-.+.++|++....+.+. ..++.|...++.
T Consensus 451 iNl~-lnkRNa---Q--lvceG----qgL~~LM~ra~k~~D-~----lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~n 515 (791)
T KOG1222|consen 451 INLC-LNKRNA---Q--LVCEG----QGLDLLMERAIKSRD-L----LLMKVVRNISQHEGATQNMFIDYVGDLAGIAKN 515 (791)
T ss_pred HHHH-hccccc---e--EEecC----cchHHHHHHHhcccc-h----HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhc
Confidence 4665 222332 2 33322 24455543 233222 1 245788999976665555 456778877754
Q ss_pred C-CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 488 R-NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 488 ~-~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
. +.....|....|+|+..++ -+..+-+.+..-||.+-+.|..+
T Consensus 516 d~~E~F~~EClGtlanL~v~d----ldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 516 DNSESFGLECLGTLANLKVTD----LDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred CchHHHHHHHHHHHhhcccCC----CCHHHHHhhccccHHHHHhhcCC
Confidence 4 4557788999999998743 36677777889999998888855
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-06 Score=88.81 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=96.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIAN-DQERVRVIV 237 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~-~~~~~~~iv 237 (594)
+++..+.+.+++....|..-..|+..+++.++..+++.|+++.|..++...+ +.+.+.+.+.+++.+.. +.+....+.
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence 3556777889999999999999999999999999999999999999987653 26666666667777665 677899999
Q ss_pred hcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCH
Q 040681 238 SELGVPTIVNVLSDSI-MKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~-~~v~~~aa~aL~~La~~~~ 272 (594)
+.+.++.|.++|.+.+ ..+++...+.+.++.+.++
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 9999999999999887 8899999999999988664
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-05 Score=82.68 Aligned_cols=307 Identities=12% Similarity=0.135 Sum_probs=199.5
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhc-----CChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhH
Q 040681 160 SYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEE-----GGVPPLLKLLKETASSEAQSAAATALYNIAND-QER 232 (594)
Q Consensus 160 ~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-----g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~ 232 (594)
-++..|+ ....+.....+.-+..+..+++.....+.+. +...+++.+|..++ .-++..|+..|..+... ...
T Consensus 57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~~~~~ 135 (429)
T cd00256 57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACFGLAK 135 (429)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhcCccc
Confidence 3444443 3455666666677777777766666666654 46788899998877 88999999999998752 221
Q ss_pred HHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
.......-....|...|+++ +...+..++.+|+.|...+ ..|..|.+.+++++|+.+|+.... .
T Consensus 136 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~---~----------- 200 (429)
T cd00256 136 MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATL---G----------- 200 (429)
T ss_pred cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccc---c-----------
Confidence 11111111234555666655 5778888899999998855 789999999999999999976420 0
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
.+++-.++-++|-|+- +++....+...+.++.
T Consensus 201 -----------------------------------------------~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~ 232 (429)
T cd00256 201 -----------------------------------------------FQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQD 232 (429)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHhc-cHHHHHhhccccHHHH
Confidence 1456677889999964 5556667777899999
Q ss_pred HHHHhhhC-CHHHHHHHHHHHHHHHHHhcCC---HHHHHHhhhcCChhhHHHHHHHHHHHhcCC--ChhhHHHHHHH---
Q 040681 392 LAKLVEKE-QGELQFNCLMTIMEITAAAESN---ADLRRAAFKTNSPAAKAVVDQLLRVINDLD--SPTLQIPAIKS--- 462 (594)
Q Consensus 392 L~~LL~~~-~~~v~~~A~~aL~nL~~~~~~~---~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~--~~~v~~~a~~a--- 462 (594)
|+.+++.. .+.+.+-+..++.|+...+... ..... .++ .. .+..++..|.... ++++.+.--..
T Consensus 233 l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~-~mv-~~-----~l~~~l~~L~~rk~~DedL~edl~~L~e~ 305 (429)
T cd00256 233 LSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAAL-QMV-QC-----KVLKTLQSLEQRKYDDEDLTDDLKFLTEE 305 (429)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHH-HHH-Hc-----ChHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 99999754 4677778999999998433111 01111 011 11 2334444444321 23333221111
Q ss_pred ----HHHhhcCChh---------------h----------------hhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCC
Q 040681 463 ----IGSLARTFPA---------------R----------------ETRVIGPLVAHL-SHRNQEVATEAAIALQKFASP 506 (594)
Q Consensus 463 ----L~~La~~~~~---------------~----------------~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~ 506 (594)
+..++ +++. . ...++..|+++| .+.++.+..=||.=|+.++.
T Consensus 306 L~~~~k~lt-sfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr- 383 (429)
T cd00256 306 LKNSVQDLS-SFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVR- 383 (429)
T ss_pred HHHHHHHcC-CHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHH-
Confidence 11121 1110 0 114578999999 45677777788888999986
Q ss_pred CCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 507 ENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 507 ~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+++.+.-+-+-||=..+++|+.+.++ |+.+||
T Consensus 384 ---~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL 417 (429)
T cd00256 384 ---HYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417 (429)
T ss_pred ---HCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 245666666678888889999999888 999998
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-06 Score=87.95 Aligned_cols=257 Identities=20% Similarity=0.252 Sum_probs=177.4
Q ss_pred HHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhh
Q 040681 192 KIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAE 269 (594)
Q Consensus 192 ~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~ 269 (594)
..|...|++..|++++..++ ...++.+|+..|-.+.. .++++.++.-| +..++.+-+.. .++.+..++.+|.+|..
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 45666799999999999986 13458889998887644 46788888766 55565555544 88999999999999999
Q ss_pred cCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccc
Q 040681 270 HDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKD 349 (594)
Q Consensus 270 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~ 349 (594)
++++...-++..|++...+--++...
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~------------------------------------------------------ 277 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTD------------------------------------------------------ 277 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCC------------------------------------------------------
Confidence 97776666667888887766654431
Q ss_pred cccCChHHHHHHHHHHHHHHHHhc-cCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 350 RENEKPEVKIKLKIACAEALWMLA-RGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 350 ~~~~dp~~k~~l~~~a~~aL~~L~-~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
| .+.+.|+-||.|++ .+.-++++.|++..+-+.|.-|-.+.++-.+..||.+++-|+.. .++-+.
T Consensus 278 -----P----~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~----KE~E~~- 343 (832)
T KOG3678|consen 278 -----P----ALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN----KEVERE- 343 (832)
T ss_pred -----H----HHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh----hhhhHH-
Confidence 1 24567888999865 34577899999999999999988888888899999999877633 333331
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-h---hccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-E---TRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~---~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+..++ ..++|+.++..++ + +..+++.... + ..-++.|+.+|++..-+.+.-++.-++-=+
T Consensus 344 -VrkS~-TlaLVEPlva~~D----P----------~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EA 407 (832)
T KOG3678|consen 344 -VRKSG-TLALVEPLVASLD----P----------GRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEA 407 (832)
T ss_pred -Hhhcc-chhhhhhhhhccC----c----------chhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHH
Confidence 22233 3457777776543 1 1122222111 1 145889999999887777777776666544
Q ss_pred CCCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 505 SPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
..... ....+-+-+-|+|..|-++..+.+.
T Consensus 408 aIKs~--Q~K~kVFseIGAIQaLKevaSS~d~ 437 (832)
T KOG3678|consen 408 AIKSL--QGKTKVFSEIGAIQALKEVASSPDE 437 (832)
T ss_pred HHHHh--ccchhHHHHHHHHHHHHHHhcCchH
Confidence 32210 1122345688999999999888776
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.4e-07 Score=79.79 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=111.9
Q ss_pred CcchHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh
Q 040681 152 DPMLSWVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 152 ~~i~~~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~ 230 (594)
-+.+.++..||..-+ ..+.+.|.+-...|.|.+.+ |.|+..+.+.+++..++.-|...+ ..+.+.+...|+|+|.|+
T Consensus 12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~d~ 89 (173)
T KOG4646|consen 12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCLDK 89 (173)
T ss_pred CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhccCh
Confidence 345567777777554 56889999999999999988 999999999999999999999998 999999999999999999
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 040681 231 ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 231 ~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~ 279 (594)
.++..|.+++++|.++..|.+++..+...++.++..|+......++.+.
T Consensus 90 ~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 90 TNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 9999999999999999999999999999999999999876545566554
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-05 Score=87.63 Aligned_cols=300 Identities=18% Similarity=0.160 Sum_probs=177.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~i 236 (594)
+-.+..-|.+.++..+..|+.+|.+++. ++.... .++.+.++|.+++ +.++..|+.++..+.. +++....
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~~- 151 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVED- 151 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHHH-
Confidence 4445567788999999999999999873 444333 4788899999988 9999999999999986 5543221
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh----cCCcCCCccCccchhhHHHH
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS----FETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~~v~~~~si~~l 312 (594)
. .++.+.++|.+.++.|+..|+.++..+ ..++.... ..++.++..|. ..+ + +..+
T Consensus 152 --~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~----~--------~~q~ 210 (526)
T PF01602_consen 152 --E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPD----P--------WLQI 210 (526)
T ss_dssp --G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCS----H--------HHHH
T ss_pred --H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccc----h--------HHHH
Confidence 2 488999999999999999999999999 32322111 23333333332 221 1 0000
Q ss_pred -HHHhhhh-ccccc-cc--CCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 313 -VQINKEM-EKNSF-VG--SKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 313 -~l~~~~~-~~~~~-~~--~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
++.-+.. ..... .. ...++++.+.+. .....+...++.++..+. .++. .-..
T Consensus 211 ~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------s~~~~V~~e~~~~i~~l~-~~~~-----~~~~ 267 (526)
T PF01602_consen 211 KILRLLRRYAPMEPEDADKNRIIEPLLNLLQ-----------------SSSPSVVYEAIRLIIKLS-PSPE-----LLQK 267 (526)
T ss_dssp HHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHS-SSHH-----HHHH
T ss_pred HHHHHHHhcccCChhhhhHHHHHHHHHHHhh-----------------ccccHHHHHHHHHHHHhh-cchH-----HHHh
Confidence 0000000 00000 00 011111111110 112355666777777664 2333 3345
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
+++.|..+|.+++++++..++.+|..|+ ..++ .. +. .....+..+...++..++..++..|.+++
T Consensus 268 ~~~~L~~lL~s~~~nvr~~~L~~L~~l~---~~~~---~~-v~--------~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 268 AINPLIKLLSSSDPNVRYIALDSLSQLA---QSNP---PA-VF--------NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHC---CHCH---HH-HG--------THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHhhcccchhehhHHHHHHHhh---cccc---hh-hh--------hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 7888888888888888888888887765 4342 11 11 11223445554555888888888888888
Q ss_pred cCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 468 RTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 468 ~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
... .-..+++.|.+.+ +..+.+++.+++.+|+.++.. . +... .-.+..+++++..+..
T Consensus 333 ~~~--n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~-~---~~~~-----~~~v~~l~~ll~~~~~ 391 (526)
T PF01602_consen 333 NES--NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEK-F---PPDA-----EWYVDTLLKLLEISGD 391 (526)
T ss_dssp -HH--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH-H---GSSH-----HHHHHHHHHHHHCTGG
T ss_pred ccc--chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhc-c---CchH-----HHHHHHHHHhhhhccc
Confidence 321 2235778888888 445778899999998888651 1 1111 1246778888885544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-05 Score=84.01 Aligned_cols=309 Identities=19% Similarity=0.188 Sum_probs=190.0
Q ss_pred CCcchHHHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-
Q 040681 151 NDPMLSWVWSYIA-AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN- 228 (594)
Q Consensus 151 ~~~i~~~i~~lv~-~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~- 228 (594)
.|.|...||.+|+ .+++.|-..|.-|+.+++++..+-+..+..-+-.+++|.++.++.++. -.++..++|+|+.++.
T Consensus 358 ~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 358 GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADF 436 (859)
T ss_pred cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhh
Confidence 5677778999988 788888888888999999999886666666667899999999999777 8899999999999997
Q ss_pred ChhHHH-HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-------CChhhHHHhhhcCCcCCCc
Q 040681 229 DQERVR-VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE-------NVIRPLVTLLSFETFVDDP 300 (594)
Q Consensus 229 ~~~~~~-~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~-------g~i~~Lv~lL~~~~~~~~~ 300 (594)
.++... ...-.+.++.++.-|.+ .|.+-.+++|++.+|+..-+ +..... ...+.+++-|-..+.+.+-
T Consensus 437 l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~---eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 437 LPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAY---EAAVSNGQTDPATPFYEAIIGSLLKVTDRADG 512 (859)
T ss_pred chhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHH---HhccCCCCCCccchhHHHHHHHHHhhcccccc
Confidence 343221 11123334444444433 78899999999999986422 111111 1122233322222211100
Q ss_pred cCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhH
Q 040681 301 RANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANS 380 (594)
Q Consensus 301 ~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~ 380 (594)
....++..|..||..+-...+.-+
T Consensus 513 --------------------------------------------------------nqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 513 --------------------------------------------------------NQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred --------------------------------------------------------chhhHHHHHHHHHHHHHHcCcHHH
Confidence 001356777788877654444333
Q ss_pred HHHHhhC---cHHHHHHHhh-----hCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 040681 381 RRISETK---GLLCLAKLVE-----KEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN 448 (594)
Q Consensus 381 ~~i~e~g---~l~~L~~LL~-----~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~ 448 (594)
--++..= .+..|-+.++ ..+ .++|..-|.+|..+.+.-.. +++. ....+...+++++.
T Consensus 537 y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~--~~~~--------~~d~iM~lflri~~ 606 (859)
T KOG1241|consen 537 YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS--DIRE--------VSDQIMGLFLRIFE 606 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc--cchh--------HHHHHHHHHHHHHc
Confidence 2222110 1111112222 112 25666777777776543322 2333 13557788889998
Q ss_pred cCCChhhHHHHHHHHHHhhcC----ChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCC
Q 040681 449 DLDSPTLQIPAIKSIGSLART----FPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523 (594)
Q Consensus 449 s~~~~~v~~~a~~aL~~La~~----~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~ 523 (594)
+..+..+.+.|..+++.|+.. |......+.|.|..-| .-.+..|...|+..++.++.. -+..-...-.+.
T Consensus 607 s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-----L~~~i~py~d~~ 681 (859)
T KOG1241|consen 607 SKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-----LEDDILPYCDEL 681 (859)
T ss_pred CCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-----HHhhhhhHHHHH
Confidence 867677889998888888742 2222235678888888 455667888888888887541 111111224456
Q ss_pred hHHHHHhccCCc
Q 040681 524 VPPLMRLLRGND 535 (594)
Q Consensus 524 i~~Lv~lL~~~~ 535 (594)
...|++.|.++.
T Consensus 682 mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 682 MTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHccCcc
Confidence 788999998764
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-05 Score=80.44 Aligned_cols=277 Identities=18% Similarity=0.182 Sum_probs=191.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC----hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG----VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~----I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..|..+|.-....+.+.+..++...... ++.+. ...|-.+++++++.+...-|+++|-.+...++.|..+
T Consensus 119 fl~ll~r~d~~iv~~~~~Ils~la~~g~~~----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~ 194 (442)
T KOG2759|consen 119 FLNLLNRQDTFIVEMSFRILSKLACFGNCK----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF 194 (442)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHhcccc----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee
Confidence 566777777766666777776665532221 11111 1234445666544788888999999999999999999
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
+.+.|+..++..|.+. +-.++-...-+++-|+-+ |...+.+...+.|+.|+++++..+
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~------------------- 254 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKEST------------------- 254 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 9999999999999433 778899999999999975 455566677788999999986552
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh------hhHHHHHhhCc
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV------ANSRRISETKG 388 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~------~~~~~i~e~g~ 388 (594)
|.++-+.++.++.|+....+ +....++..++
T Consensus 255 -------------------------------------------KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v 291 (442)
T KOG2759|consen 255 -------------------------------------------KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV 291 (442)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc
Confidence 34556677888899875543 34456677777
Q ss_pred HHHHHHHhhh--CCHHHHH-------HHHHHHHHHHHHhcCCHHHHHHhhhcCChh-----------------hHHHHHH
Q 040681 389 LLCLAKLVEK--EQGELQF-------NCLMTIMEITAAAESNADLRRAAFKTNSPA-----------------AKAVVDQ 442 (594)
Q Consensus 389 l~~L~~LL~~--~~~~v~~-------~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~-----------------~~~~v~~ 442 (594)
.+++-.|.+. .|+++.. .--.-...|++..+...+++.. ...-+|. --.++..
T Consensus 292 ~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG-~L~WSP~Hk~e~FW~eNa~rlnennyellki 370 (442)
T KOG2759|consen 292 LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSG-RLEWSPVHKSEKFWRENADRLNENNYELLKI 370 (442)
T ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhC-CcCCCccccccchHHHhHHHHhhccHHHHHH
Confidence 6666665543 2343322 1122223344333333333321 1111222 2358899
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 443 LLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 443 Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
|+++|..++++.+..-|+-=||...+..|.. +.|+=..+.++|++.+++|+.+|..|+..+..
T Consensus 371 L~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 371 LIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999999888999999999999999876643 33888999999999999999999999988755
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00011 Score=80.80 Aligned_cols=284 Identities=17% Similarity=0.251 Sum_probs=203.5
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCChh--
Q 040681 156 SWVWSYIAAIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIANDQE-- 231 (594)
Q Consensus 156 ~~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~~~-- 231 (594)
..|..|+.++.+ --.+.|+.|+..|..+++. ||.. +...|.+||++.|+.. .++++...++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 357778888854 4578999999999999854 5544 4567899999999775 348999999999999876442
Q ss_pred -----HH----------HHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHc-CChhhHHHhhhc
Q 040681 232 -----RV----------RVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARE-NVIRPLVTLLSF 293 (594)
Q Consensus 232 -----~~----------~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~-g~i~~Lv~lL~~ 293 (594)
.+ +.++ ..+-|..|+..+...+--||..+...|.++-++ .++.|+++... -||..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 22 3344 577899999999999999999999999998765 56678877654 579999999965
Q ss_pred CCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhc
Q 040681 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLA 373 (594)
Q Consensus 294 ~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~ 373 (594)
.. . .++-.+.-.|..|.
T Consensus 178 sr----E-----------------------------------------------------------~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 178 SR----E-----------------------------------------------------------PIRNEAILLLSELV 194 (970)
T ss_pred hh----h-----------------------------------------------------------hhchhHHHHHHHHH
Confidence 41 0 11334556677888
Q ss_pred cCChhhHHHHHhhCcHHHHHHHhhhCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc
Q 040681 374 RGSVANSRRISETKGLLCLAKLVEKEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND 449 (594)
Q Consensus 374 ~~~~~~~~~i~e~g~l~~L~~LL~~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s 449 (594)
++++.+++.++=+.++..|..+++.+. +-|...|+..|.||- ..|...+. .|...+ -++.|.++|.-
T Consensus 195 k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL---K~N~SNQ~-~FrE~~-----~i~rL~klL~~ 265 (970)
T KOG0946|consen 195 KDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL---KNNISNQN-FFREGS-----YIPRLLKLLSV 265 (970)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH---hhCcchhh-HHhccc-----cHHHHHhhcCc
Confidence 899999999999999999999997532 257788899998887 45555566 566544 67888877652
Q ss_pred C---C----ChhhH-----HHHHHHHHHhhcCChh------h-----hhccHHHHHHhccC--CCHHHHHHHHHHHHHhc
Q 040681 450 L---D----SPTLQ-----IPAIKSIGSLARTFPA------R-----ETRVIGPLVAHLSH--RNQEVATEAAIALQKFA 504 (594)
Q Consensus 450 ~---~----~~~v~-----~~a~~aL~~La~~~~~------~-----~~~~i~~Lv~lL~~--~~~~v~~~Aa~aL~nl~ 504 (594)
. + .+.-+ ..++.+++.|...+.. . +.+.+..|..++-+ -..+|+.++..++++.+
T Consensus 266 f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevV 345 (970)
T KOG0946|consen 266 FEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVV 345 (970)
T ss_pred ccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHH
Confidence 2 2 12211 3455555555542221 1 12667777777733 46789999999999998
Q ss_pred CCCCccchhhHHHHH
Q 040681 505 SPENFLCTEHSKAII 519 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~ 519 (594)
. +|+ .++..+.
T Consensus 346 R-gn~---~nQ~~F~ 356 (970)
T KOG0946|consen 346 R-GNA---RNQDEFA 356 (970)
T ss_pred H-hch---HHHHHHh
Confidence 8 553 5555554
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.2e-05 Score=80.29 Aligned_cols=226 Identities=13% Similarity=0.083 Sum_probs=138.5
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 161 YIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
++..|. .++.+++..|+..+... +++ .++..|++.|.+.+ +.++..++.+|+.+-. .
T Consensus 59 L~~aL~~d~~~ev~~~aa~al~~~--~~~---------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~----------~ 116 (410)
T TIGR02270 59 LVSALAEADEPGRVACAALALLAQ--EDA---------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG----------R 116 (410)
T ss_pred HHHHHhhCCChhHHHHHHHHHhcc--CCh---------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc----------h
Confidence 555663 45566666555555322 211 13778888887776 7788888888876554 3
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+..+.|+.+|++.++.++..+..++...- ....+.|..+|++.+
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d------------------------ 160 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHED------------------------ 160 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCC------------------------
Confidence 45677788888778888877776665521 123456777765431
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
..++..|+++|+.+. ..+ +++.|...+.+.
T Consensus 161 ---------------------------------------~~Vra~A~raLG~l~--~~~---------a~~~L~~al~d~ 190 (410)
T TIGR02270 161 ---------------------------------------ALVRAAALRALGELP--RRL---------SESTLRLYLRDS 190 (410)
T ss_pred ---------------------------------------HHHHHHHHHHHHhhc--ccc---------chHHHHHHHcCC
Confidence 124666777777763 222 466677777777
Q ss_pred CHHHHHHHHHHHHHHHH----------Hhc-CCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 400 QGELQFNCLMTIMEITA----------AAE-SNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~----------~~~-~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++.|+..|++++..+.. ... +.+.-++.+.....+.....++.|..++++ +.++..++.++|.+-
T Consensus 191 ~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d---~~vr~~a~~AlG~lg- 266 (410)
T TIGR02270 191 DPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA---AATRREALRAVGLVG- 266 (410)
T ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC---hhhHHHHHHHHHHcC-
Confidence 77888777777754420 000 000000000000000122456667777653 458899999999876
Q ss_pred CChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 469 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
....++.|++.+++.. ++..|..++.+++.
T Consensus 267 -----~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 267 -----DVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred -----CcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 4578999999997654 89999999999865
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-07 Score=63.63 Aligned_cols=41 Identities=51% Similarity=0.721 Sum_probs=38.4
Q ss_pred CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 187 NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 187 ~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
|+++++.+++.|+||+|+++|++++ ++++++|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~-~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPD-PEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSS-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence 4789999999999999999999888 9999999999999974
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.1e-06 Score=85.08 Aligned_cols=183 Identities=21% Similarity=0.222 Sum_probs=134.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC---CHHHHHHHHHHHHHhhCChhHHHH
Q 040681 159 WSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA---SSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 159 ~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~---~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
..++..+..+|.-.+..|+..|..++...+....... .+.++.+++.|++.. +.+.+.-++.+|.+|...++.|..
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~ 186 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV 186 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH
Confidence 3466678889999999999999999876555443322 566788888887631 156779999999999999999999
Q ss_pred HHhcCCHHHHHHhh------cCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 236 IVSELGVPTIVNVL------SDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 236 iv~~g~i~~Lv~lL------~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
+.+.|+++.|..+| .+. +..++-.+.-++|-|+- +++....+.+.+.|+.|+++++...
T Consensus 187 f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~------------- 252 (312)
T PF03224_consen 187 FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSI------------- 252 (312)
T ss_dssp HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---------------
T ss_pred HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcc-------------
Confidence 99999999999999 222 67789999999999997 5678888888899999999986652
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh-hHHHHHhhC
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA-NSRRISETK 387 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~-~~~~i~e~g 387 (594)
|.++.+.+..+|+|+....++ +...|+..|
T Consensus 253 -------------------------------------------------KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~ 283 (312)
T PF03224_consen 253 -------------------------------------------------KEKVVRVSLAILRNLLSKAPKSNIELMVLCG 283 (312)
T ss_dssp -------------------------------------------------SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred -------------------------------------------------cchHHHHHHHHHHHHHhccHHHHHHHHHHcc
Confidence 235677889999999754433 788888888
Q ss_pred cHHHHHHHhhh--CCHHHHH
Q 040681 388 GLLCLAKLVEK--EQGELQF 405 (594)
Q Consensus 388 ~l~~L~~LL~~--~~~~v~~ 405 (594)
+++.+-.|.+. +|+++..
T Consensus 284 ~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 284 LLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp HHHHHHHHHSS--SSHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHH
Confidence 88777776654 4566654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-05 Score=82.95 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=141.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh------cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE------EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~------~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
.++..+ +.+.+.....+..+.++..+++.....+.+ .....+|++++..++ .-++..|+..|..|......+
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTSTTT-
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCCcc
Confidence 455555 567888889999999999988877777766 235789999999888 999999999999998744433
Q ss_pred HHHHhcCCHHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLSDS----IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~----~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
..-...+.++.++..|.+. +.+++..++.+|.+|.. .+..|..|.+.|+++.|+.+|.........
T Consensus 140 ~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~--------- 209 (312)
T PF03224_consen 140 SEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNS--------- 209 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH-----------------
T ss_pred ccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCC---------
Confidence 3322255678888888753 55678999999999997 568999999999999999999422100000
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcH
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGL 389 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l 389 (594)
...+++-.++-++|.|+ -+++....+...+.+
T Consensus 210 -----------------------------------------------~~~Ql~Y~~ll~lWlLS-F~~~~~~~~~~~~~i 241 (312)
T PF03224_consen 210 -----------------------------------------------SGIQLQYQALLCLWLLS-FEPEIAEELNKKYLI 241 (312)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHH
T ss_pred -----------------------------------------------CchhHHHHHHHHHHHHh-cCHHHHHHHhccchH
Confidence 01356788899999996 578889999999999
Q ss_pred HHHHHHhhh-CCHHHHHHHHHHHHHHH
Q 040681 390 LCLAKLVEK-EQGELQFNCLMTIMEIT 415 (594)
Q Consensus 390 ~~L~~LL~~-~~~~v~~~A~~aL~nL~ 415 (594)
+.|+.+++. ..+.+.+-+.+++.|+.
T Consensus 242 ~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 242 PLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 999999975 45778888999999997
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0012 Score=75.56 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
+..+.+..+++.|.+.|+-.--+|.+.+..+++.... +|..|.+=+++++ +.++-.|+++|+++-.. +..+.
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~~-~i~e~- 140 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSS-PVVRALAVRTMMCIRVS-SVLEY- 140 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCcH-HHHHH-
Confidence 4445566667777777777777777777655543222 3566666677776 77777777777776441 12222
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
.++++.+.|.+.++-||..|+.++.++...+| +.+.+.|.++.|.++|.+.
T Consensus 141 ----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~ 191 (746)
T PTZ00429 141 ----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDN 191 (746)
T ss_pred ----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCC
Confidence 35566777777778888888888888766554 2333445666777766543
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.1e-05 Score=84.67 Aligned_cols=252 Identities=16% Similarity=0.142 Sum_probs=177.2
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHh-hC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 201 PPLLKLLKETASSEAQSAAATALYNI-AN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 201 ~~Lv~LL~~~~~~~v~e~A~~aL~~L-a~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
..|++=|+...++..|.+|+.=|+.+ +. +++.-.-+--.-.+|.|+.+|+.. +.+++-.|+++|.+||..-|..-..
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 34444444442278888888877754 43 555544333345799999999977 9999999999999999988888889
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
++++++||.|++-|..- ..+
T Consensus 250 vV~~~aIPvl~~kL~~I---------------eyi--------------------------------------------- 269 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTI---------------EYI--------------------------------------------- 269 (1051)
T ss_pred eecccchHHHHHhhhhh---------------hhh---------------------------------------------
Confidence 99999999999876332 001
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
.+-+.+..||-.+++.++ +.+..+|++-..+..|.--...+|..|+.+..|+|.--..+ .|. .+.
T Consensus 270 --DvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd------~f~----~v~ 334 (1051)
T KOG0168|consen 270 --DVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSD------EFH----FVM 334 (1051)
T ss_pred --HHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cch----HHH
Confidence 345667888999976544 56788999999999998778889999999999998322111 122 133
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--------hhccHHHHHHhccCC----CHHHHHHHHHHHHHhcC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--------ETRVIGPLVAHLSHR----NQEVATEAAIALQKFAS 505 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--------~~~~i~~Lv~lL~~~----~~~v~~~Aa~aL~nl~~ 505 (594)
..++.|..+|..++ ....+.++.++..++..+... ..+.|....+||.-. +..+-.-....|..+++
T Consensus 335 ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS 413 (1051)
T KOG0168|consen 335 EALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSS 413 (1051)
T ss_pred HHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHcc
Confidence 47888999998887 888889999999888655321 126777777777322 22344455666777766
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
+. +.....+.+.+....|-.+|.
T Consensus 414 -~~---pl~~~tl~k~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 414 -GS---PLLFRTLLKLDIADTLKRILQ 436 (1051)
T ss_pred -CC---hHHHHHHHHhhHHHHHHHHHh
Confidence 33 456666666666666666665
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00067 Score=77.56 Aligned_cols=283 Identities=13% Similarity=0.075 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh-hccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASL-AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~l-a~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
+.++-..|++.+...|.+|++.+... +.+. ... ...+-.++++.+.+ .+++.-.--.|.+.+. +++..-.
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelalL 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKALL 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHHH
Confidence 44566778888888899999876544 4443 221 34566778888887 8999888888888887 4433211
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
++..|.+=+.++++-+|..|.++|+++-. +..-+. .++++.+.|.+. +
T Consensus 106 -----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~----~---------------- 153 (746)
T PTZ00429 106 -----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADP----D---------------- 153 (746)
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCC----C----------------
Confidence 37788888899999999999999988843 222221 234444444332 1
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..|+-++.++...+++ .+.+.|.++.|..+
T Consensus 154 -------------------------------------------pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~L 187 (746)
T PTZ00429 154 -------------------------------------------PYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVEL 187 (746)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHH
Confidence 13577788888888655554 33466788999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~ 475 (594)
|.+.++.++.+|+.+|.+|. +.+++.-. . ....+..|+..|...+ +-.|...+..|....-.......
T Consensus 188 L~D~dp~Vv~nAl~aL~eI~---~~~~~~l~----l----~~~~~~~Ll~~L~e~~-EW~Qi~IL~lL~~y~P~~~~e~~ 255 (746)
T PTZ00429 188 LNDNNPVVASNAAAIVCEVN---DYGSEKIE----S----SNEWVNRLVYHLPECN-EWGQLYILELLAAQRPSDKESAE 255 (746)
T ss_pred hcCCCccHHHHHHHHHHHHH---HhCchhhH----H----HHHHHHHHHHHhhcCC-hHHHHHHHHHHHhcCCCCcHHHH
Confidence 99999999999999999887 33331111 0 1235566676665544 44455555555332211111123
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCchHhHhHH
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGL 542 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~vq~~Al 542 (594)
.++..+...|.+.++.|..+|+.++.++...-+ .+..+.+... ..++|+.|+.+...+|.-+|
T Consensus 256 ~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~---~~~~~~~~~r-l~~pLv~L~ss~~eiqyvaL 318 (746)
T PTZ00429 256 TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS---QELIERCTVR-VNTALLTLSRRDAETQYIVC 318 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC---HHHHHHHHHH-HHHHHHHhhCCCccHHHHHH
Confidence 678888889999999999999999999864111 2322222211 23677777654333666555
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-06 Score=60.76 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=38.5
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 229 ~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+++++..+++.|++|+|+++|++++.++++.|+|+|+|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00026 Score=74.09 Aligned_cols=227 Identities=23% Similarity=0.326 Sum_probs=165.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..++..+.+.+...|..|+..++.+... -.+|+|..+|.+.+ +.++..|+.+|+.+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDED-PRVRDAAADALGELGD-------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--------
Confidence 344566777888899999999997766432 57899999999998 9999999999998865
Q ss_pred HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 237 VSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 237 v~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
..++++|+.+|. +++..++..++++|..+-. ..++.+|+..+....... . ..
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~-a-----------~~-- 156 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGS-A-----------AA-- 156 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhh-h-----------hh--
Confidence 346899999999 5799999999999999843 224888888887652100 0 00
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..+++. ..++..+..+|..+ +++. .++.+..+
T Consensus 157 -----------------------------------~~~~~~--~~~r~~a~~~l~~~--~~~~---------~~~~l~~~ 188 (335)
T COG1413 157 -----------------------------------ALDAAL--LDVRAAAAEALGEL--GDPE---------AIPLLIEL 188 (335)
T ss_pred -----------------------------------hccchH--HHHHHHHHHHHHHc--CChh---------hhHHHHHH
Confidence 000000 13466777888877 4554 68899999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~ 475 (594)
+...+..++..|+.+|..+. ..+. .+++.+...+...+ ..++..++.+|+.+- ..
T Consensus 189 l~~~~~~vr~~Aa~aL~~~~---~~~~---------------~~~~~l~~~~~~~~-~~vr~~~~~~l~~~~------~~ 243 (335)
T COG1413 189 LEDEDADVRRAAASALGQLG---SENV---------------EAADLLVKALSDES-LEVRKAALLALGEIG------DE 243 (335)
T ss_pred HhCchHHHHHHHHHHHHHhh---cchh---------------hHHHHHHHHhcCCC-HHHHHHHHHHhcccC------cc
Confidence 99988999999999997665 2221 14455565655444 888888888888875 34
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..+..++..+.+.+..++..+..++..+
T Consensus 244 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 271 (335)
T COG1413 244 EAVDALAKALEDEDVILALLAAAALGAL 271 (335)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHhccc
Confidence 5688888899888888888887777633
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0015 Score=75.22 Aligned_cols=329 Identities=18% Similarity=0.209 Sum_probs=194.6
Q ss_pred ccccCCcccCCcchHHHHHHH----HHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhc----cCCC
Q 040681 142 VLTLPPIASNDPMLSWVWSYI----AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLK----ETAS 212 (594)
Q Consensus 142 ~~~l~~ia~~~~i~~~i~~lv----~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~----~~~~ 212 (594)
..++|.+..+... ..+.++. +.+...+..+|..|++++...+..++.++.....- ..+|.++..|. .++
T Consensus 142 l~s~~~~~~~~~~-~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d- 219 (1075)
T KOG2171|consen 142 LSSLPETFGNTLQ-PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD- 219 (1075)
T ss_pred HHhhhhhhccccc-hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-
Confidence 4456655544332 1233333 34455555599999999999888766555555443 45777777654 445
Q ss_pred HHHHHHHHHHHHHhhC-ChhH-HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC--Chhh
Q 040681 213 SEAQSAAATALYNIAN-DQER-VRVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFAREN--VIRP 286 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~-~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g--~i~~ 286 (594)
.+.-..+..+|-.|+. .+.. +..+.+ .|..-..+.++. +..+|..|...|..++++-|...+.-...| .++.
T Consensus 220 ~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 220 DDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred hHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 5666677778887776 3333 444433 455666666665 788999999999999886443322222211 2333
Q ss_pred HHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHH
Q 040681 287 LVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACA 366 (594)
Q Consensus 287 Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~ 366 (594)
++..+...... +. |. +.++... -+.++| ...|.
T Consensus 298 ~l~~mte~~~D-~e--------w~--------~~d~~de------------------------d~~~~~------~~~A~ 330 (1075)
T KOG2171|consen 298 LLAMMTEEEDD-DE--------WS--------NEDDLDE------------------------DDEETP------YRAAE 330 (1075)
T ss_pred HHHhcCCcccc-hh--------hc--------ccccccc------------------------ccccCc------HHHHH
Confidence 33333222110 00 00 0000000 011222 34567
Q ss_pred HHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHH
Q 040681 367 EALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRV 446 (594)
Q Consensus 367 ~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~l 446 (594)
++|-.++.+=+..+ +-.-.++.+-.+|.+.+..-+..++++|+.++ ++..+.-.. . ...+++.++..
T Consensus 331 ~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~---EGc~~~m~~-~------l~~Il~~Vl~~ 397 (1075)
T KOG2171|consen 331 QALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWKERHAALLALSVIA---EGCSDVMIG-N------LPKILPIVLNG 397 (1075)
T ss_pred HHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---cccHHHHHH-H------HHHHHHHHHhh
Confidence 77777764322211 00113556666778888888999999997666 665544332 1 24578888888
Q ss_pred HhcCCChhhHHHHHHHHHHhhcCChhh-h----hccHHHHHHhccC-CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHH
Q 040681 447 INDLDSPTLQIPAIKSIGSLARTFPAR-E----TRVIGPLVAHLSH-RNQEVATEAAIALQKFASPENFLCTEHSKAIIE 520 (594)
Q Consensus 447 L~s~~~~~v~~~a~~aL~~La~~~~~~-~----~~~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~ 520 (594)
|++.. +.||-.|+.++|.++.++... + ..+++.|+..+++ .++.|+..|+.||-|+.. + .-+.+++
T Consensus 398 l~Dph-prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E-~------~~~~~l~ 469 (1075)
T KOG2171|consen 398 LNDPH-PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSE-E------CDKSILE 469 (1075)
T ss_pred cCCCC-HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHH-h------CcHHHHH
Confidence 87655 999999999999999776431 2 2677888888855 677999999999999976 2 2333332
Q ss_pred ---cCChHHHHHhcc-CCch-HhHhHH
Q 040681 521 ---FNAVPPLMRLLR-GNDR-TQLHGL 542 (594)
Q Consensus 521 ---~g~i~~Lv~lL~-~~~~-vq~~Al 542 (594)
.+...+++.+|. ++.+ +|..++
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 234443444444 5555 777655
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=78.55 Aligned_cols=321 Identities=12% Similarity=0.098 Sum_probs=176.1
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-ChHHHHHhhccCCCHHHHHHHHHHHHHhhCC
Q 040681 151 NDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEG-GVPPLLKLLKETASSEAQSAAATALYNIAND 229 (594)
Q Consensus 151 ~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g-~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~ 229 (594)
+.|+...++.++...++.++..|..|+.++........ ...+...+ -+..|..+-.+.+ ++++.+.+.+|..|-..
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~-~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDED-PEVRKNVCRALVFLLEV 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHh
Confidence 56777889999999999999999999999977654322 22222222 3555666655566 99999999999998763
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 230 QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 230 ~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
...|-.=.=.+.++.+++.-.+.+.+|--.|+.....+|.. |-++..+.. -++.|+-+|-++-.-++.
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p--~l~kliPvLl~~M~Ysd~--------- 313 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQP--YLDKLIPVLLSGMVYSDD--------- 313 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHH--HHHHHHHHHHccCccccc---------
Confidence 22221111234567777777788999999999999999984 467777654 344444444333110110
Q ss_pred HHHHHHhhhhcccccc-cCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCc
Q 040681 310 HTIVQINKEMEKNSFV-GSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKG 388 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~-~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~ 388 (594)
.-+++.|-..+..... +.++- |-.. |.|+ ....+.+...++--...-+..+
T Consensus 314 D~~LL~~~eeD~~vpDreeDIk-PRfh------------ksk~---------------~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIK-PRFH------------KSKE---------------HGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred cHHHhcCccccccCCchhhhcc-chhh------------hchh---------------ccCccccccccccccccccccc
Confidence 0012221111111111 11111 1000 0000 0000000000000000000000
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
-++-.++..++.+|--|+.+- ++. +. ..+++.|-..|.+.+ +.+++.++-+||.+|.
T Consensus 366 ---------~~dWNLRkCSAAaLDVLanvf------~~e-lL------~~l~PlLk~~L~~~~-W~vrEagvLAlGAIAE 422 (885)
T KOG2023|consen 366 ---------FSDWNLRKCSAAALDVLANVF------GDE-LL------PILLPLLKEHLSSEE-WKVREAGVLALGAIAE 422 (885)
T ss_pred ---------cccccHhhccHHHHHHHHHhh------HHH-HH------HHHHHHHHHHcCcch-hhhhhhhHHHHHHHHH
Confidence 011257777777776665332 111 11 224455555555544 9999999999999994
Q ss_pred CChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhH-HHHHHcCChHHHHHhccCCc-hHhHhHH
Q 040681 469 TFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHS-KAIIEFNAVPPLMRLLRGND-RTQLHGL 542 (594)
Q Consensus 469 ~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~-~~i~~~g~i~~Lv~lL~~~~-~vq~~Al 542 (594)
..-.. -...||.|+++|+++.+-||.-.||+|+.++. ++..++. +.+.. ....|++.+-.++ .||.+|+
T Consensus 423 GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~---wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAc 497 (885)
T KOG2023|consen 423 GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK---WVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAAC 497 (885)
T ss_pred HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh---hHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHH
Confidence 21100 01357899999999999999999999999853 2212222 22211 2333333333444 4999887
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0018 Score=71.70 Aligned_cols=273 Identities=15% Similarity=0.192 Sum_probs=189.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHh-cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVE-EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~-~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
|.-++..+..-|-.+|..|..-|.++.+. ..+.+.++.. --||..|+.+|.+.. +.++-.+.-.|..|..+..+.+.
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~~IQK 202 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNSSIQK 202 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCchHHH
Confidence 33456666777888999999999887653 3566666664 478999999999988 88999999999999998777666
Q ss_pred HH-hcCCHHHHHHhhcCC---C-HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 236 IV-SELGVPTIVNVLSDS---I-MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 236 iv-~~g~i~~Lv~lL~~~---~-~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
++ =+++..-|..+++.. + .-|.+.|...|-||-.++..+|..|.+.+-|+.|.++|......+.. +
T Consensus 203 lVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~E--v------- 273 (970)
T KOG0946|consen 203 LVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGE--V------- 273 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcc--c-------
Confidence 66 578899999999753 2 35889999999999999888999999999999999999765332211 0
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc-CC-----hhhHHHHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR-GS-----VANSRRIS 384 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~-~~-----~~~~~~i~ 384 (594)
.++++.-... ...+..+++.+.. |+ ..+++.+.
T Consensus 274 ----------------------------------------~~W~~Qrv~N-v~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ 312 (970)
T KOG0946|consen 274 ----------------------------------------FGWSTQRVQN-VIEALQIVRSLVSPGNTSSITHQNQKALV 312 (970)
T ss_pred ----------------------------------------ccccHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 0122111001 1123344444432 22 23456778
Q ss_pred hhCcHHHHHHHhhhCC--HHHHHHHHHHHHHHHHHhcCCHHHHHHhhh----cCCh-hhHHHHHHHHHHHhcCCChhhHH
Q 040681 385 ETKGLLCLAKLVEKEQ--GELQFNCLMTIMEITAAAESNADLRRAAFK----TNSP-AAKAVVDQLLRVINDLDSPTLQI 457 (594)
Q Consensus 385 e~g~l~~L~~LL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~----~~~~-~~~~~v~~Ll~lL~s~~~~~v~~ 457 (594)
..+++..|..++-++. .+++..+..++++..++... .+. .|. +..| ....++-.++.+..+..+...|.
T Consensus 313 ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~---nQ~-~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRc 388 (970)
T KOG0946|consen 313 SSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR---NQD-EFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRC 388 (970)
T ss_pred HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH---HHH-HHhhccCCCCCCCccchhHHHHHHHhccCCchHHH
Confidence 8899999999887663 47888888999888755443 334 233 3333 23445555666666666688899
Q ss_pred HHHHHHHHhhcCChhhhhccHHHHHHhc
Q 040681 458 PAIKSIGSLARTFPARETRVIGPLVAHL 485 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~~~~i~~Lv~lL 485 (594)
++..++.+.-......+..++..++..-
T Consensus 389 Av~ycf~s~l~dN~~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 389 AVLYCFRSYLYDNDDGQRKFLKTLLPSS 416 (970)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHhhhh
Confidence 9999999887655555556666666655
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0007 Score=74.98 Aligned_cols=283 Identities=17% Similarity=0.173 Sum_probs=177.1
Q ss_pred ccCCcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHH
Q 040681 144 TLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATAL 223 (594)
Q Consensus 144 ~l~~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL 223 (594)
.+..|.+.|=++...++....|++.++-.|.+|+.|...+.+..|.....+ +++..++|.+.+ ..+...++..+
T Consensus 130 alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~-hGVL~~~l~l~ 203 (866)
T KOG1062|consen 130 ALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKH-HGVLIAGLHLI 203 (866)
T ss_pred HhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcC-CceeeeHHHHH
Confidence 355666666666677777778899999999999999988888777765554 677888898877 77777778888
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcC---------------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhH
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSD---------------SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~---------------~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~L 287 (594)
..++. +++.-..+-+ .++.||..|+. ++|-+|....++|+-|-+++++..+.+.+ .|
T Consensus 204 ~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iL 276 (866)
T KOG1062|consen 204 TELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----IL 276 (866)
T ss_pred HHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HH
Confidence 88876 5555444433 67788888753 27889999999999999988777776654 23
Q ss_pred HHhhhcCCcCCCccCccchh---hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHH
Q 040681 288 VTLLSFETFVDDPRANSGKQ---SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIA 364 (594)
Q Consensus 288 v~lL~~~~~~~~~~~v~~~~---si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~ 364 (594)
-+++.+. +-++++.+.- |++.+. ... . ...++..
T Consensus 277 aqvatnt---dsskN~GnAILYE~V~TI~---------------------~I~---------------~----~~~Lrvl 313 (866)
T KOG1062|consen 277 AQVATNT---DSSKNAGNAILYECVRTIM---------------------DIR---------------S----NSGLRVL 313 (866)
T ss_pred HHHHhcc---cccccchhHHHHHHHHHHH---------------------hcc---------------C----CchHHHH
Confidence 3333332 1122222211 233220 000 0 0135666
Q ss_pred HHHHHHHhccCChhhHHHHHhhCcHHHH------------------HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 365 CAEALWMLARGSVANSRRISETKGLLCL------------------AKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 365 a~~aL~~L~~~~~~~~~~i~e~g~l~~L------------------~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
|+.+|+.+-.+.+.|.+.+ ++..| +..|++.|..+|..|...+.-|+ +
T Consensus 314 ainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv----n------ 379 (866)
T KOG1062|consen 314 AINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV----N------ 379 (866)
T ss_pred HHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----c------
Confidence 7777777644444444433 23333 34445555666666665554443 1
Q ss_pred HhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 427 AAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 427 ~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
+.-+..+++.|+.+|.+.+ ++.+..++.-+..++..+.....=.|..+.+.|...-.-|...+...+..+
T Consensus 380 ------~~Nv~~mv~eLl~fL~~~d-~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~L 449 (866)
T KOG1062|consen 380 ------ESNVRVMVKELLEFLESSD-EDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRL 449 (866)
T ss_pred ------cccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 1113448899999999885 999999999999999877654333444444444433333444444444333
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00081 Score=71.87 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=100.2
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
..+++.|+..|....++++...++.++.. .++ ..++..|+..|.+.++.++..++.+|..+- +
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~----- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--G----- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--c-----
Confidence 35688899999654337777766655543 221 113888999999999999999999998762 2
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
..+.+.|+.+|.+. +.
T Consensus 116 ----~~a~~~L~~~L~~~----~p-------------------------------------------------------- 131 (410)
T TIGR02270 116 ----RQAEPWLEPLLAAS----EP-------------------------------------------------------- 131 (410)
T ss_pred ----hHHHHHHHHHhcCC----Ch--------------------------------------------------------
Confidence 23567788887554 11
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
.++..+..++... +. ...+.+..+|++.++.++..|+.+|..|. . .
T Consensus 132 ---~vR~aal~al~~r--~~----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~---~--~-------------- 177 (410)
T TIGR02270 132 ---PGRAIGLAALGAH--RH----------DPGPALEAALTHEDALVRAAALRALGELP---R--R-------------- 177 (410)
T ss_pred ---HHHHHHHHHHHhh--cc----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc---c--c--------------
Confidence 1244455555442 11 13678888899899999999999997663 1 0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
..++.|...+.+.+ +.|+..|+.+++.+-
T Consensus 178 -~a~~~L~~al~d~~-~~VR~aA~~al~~lG 206 (410)
T TIGR02270 178 -LSESTLRLYLRDSD-PEVRFAALEAGLLAG 206 (410)
T ss_pred -cchHHHHHHHcCCC-HHHHHHHHHHHHHcC
Confidence 03344555555444 777777777776553
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0012 Score=73.26 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=162.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchh---HHHHHhcCChHHHHHhhccCC------CHHHHHHHHHHHHHhh
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRN---KKIIVEEGGVPPLLKLLKETA------SSEAQSAAATALYNIA 227 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~---~~~i~~~g~I~~Lv~LL~~~~------~~~v~e~A~~aL~~La 227 (594)
.+.+.+..|+..+.+.|..++.-+..+...++.. ++.|.+.=|...|-+||+++. ....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3556778899988888888999999999876643 345778877889999998832 2567778999999999
Q ss_pred CChhHH--HHHHhcCCHHHHHHhhcCCCH-HHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCcc
Q 040681 228 NDQERV--RVIVSELGVPTIVNVLSDSIM-KVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANS 304 (594)
Q Consensus 228 ~~~~~~--~~iv~~g~i~~Lv~lL~~~~~-~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~ 304 (594)
.+++.. ..++ +-||.|+.++.+.+. .+...+..+|..++. +++.+..+.+.|+++.|++.+.++. .
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~~~---~----- 154 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPNQS---F----- 154 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHhCc---c-----
Confidence 987753 4554 359999999988866 999999999999996 6689999999999999999987742 1
Q ss_pred chhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-----hh
Q 040681 305 GKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV-----AN 379 (594)
Q Consensus 305 ~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~-----~~ 379 (594)
....+..+|.++..... +.
T Consensus 155 --------------------------------------------------------~~E~Al~lL~~Lls~~~~~~~~~~ 178 (543)
T PF05536_consen 155 --------------------------------------------------------QMEIALNLLLNLLSRLGQKSWAED 178 (543)
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHhcchhhhhhh
Confidence 13344555555433211 00
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHH
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPA 459 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a 459 (594)
.+.+ ...++.+...+.......+...+..|..+-.-....+ .+. ..+......+..-+..+|++...+.-+.++
T Consensus 179 ~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~--~~~--~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 179 SQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP--LES--PPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred HHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc--ccc--CChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1111 1245566666666666666777777766642110000 010 111122345666677788877767777788
Q ss_pred HHHHHHhhc
Q 040681 460 IKSIGSLAR 468 (594)
Q Consensus 460 ~~aL~~La~ 468 (594)
+....+|..
T Consensus 253 l~Laa~Ll~ 261 (543)
T PF05536_consen 253 LNLAASLLD 261 (543)
T ss_pred HHHHHHHHH
Confidence 877777764
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.001 Score=73.68 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=184.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~ 239 (594)
+..-|++.+.-+.--|+.+|++++.. +..+ +..|-..++|+..+ +-++..|+-+...+-+ .++..+.+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~--Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f--- 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSP--EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF--- 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCH--HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh---
Confidence 34467788888888999999999864 3322 23455667888888 9999999888887776 67666655
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
++...++|.+.+..|.......+..||..+++.-.-+.+ .++-||..|+.-+....+.
T Consensus 181 --~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~ysp------------------ 238 (866)
T KOG1062|consen 181 --VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSP------------------ 238 (866)
T ss_pred --hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCC------------------
Confidence 567788898888889889999999999988888788877 7888888886532111100
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
.+.-.|+ .||- ++....+.|+-|..++++..+.|.+ .|.++....
T Consensus 239 ---eydv~gi-----------------------~dPF----LQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatnt 283 (866)
T KOG1062|consen 239 ---EYDVHGI-----------------------SDPF----LQIRILRLLRILGQNDADASDLMND-----ILAQVATNT 283 (866)
T ss_pred ---ccCccCC-----------------------CchH----HHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcc
Confidence 0001122 3332 4666788888887777765655543 445555432
Q ss_pred C------HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 400 Q------GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 400 ~------~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
+ .-+-+.|..+|+.|- .++.+|-. .++.|-++|.+.+ ..++--|+.+|..+....+..
T Consensus 284 dsskN~GnAILYE~V~TI~~I~----~~~~Lrvl-----------ainiLgkFL~n~d-~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIR----SNSGLRVL-----------AINILGKFLLNRD-NNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred cccccchhHHHHHHHHHHHhcc----CCchHHHH-----------HHHHHHHHhcCCc-cceeeeehhhHHhhhcCCcHH
Confidence 2 246677888887663 45556553 6778888887666 888888888888888655544
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
-.+--..+++.|++.+..+++.|...+..++-
T Consensus 348 vqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 348 VQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 44556788999999999999999999988876
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0012 Score=71.77 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHHhhCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 213 SEAQSAAATALYNIAND-QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~-~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
......|+-.+.++++. ..-+.-.-...++.+||++|..|+..++..+.++|.|+.......|..|...|+|..|.+.+
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~ 470 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence 45555566666666663 22344455677899999999999999999999999999986546899999999999999998
Q ss_pred hcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHH
Q 040681 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 292 ~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
.+.. + .++..+.++|++
T Consensus 471 ~~~~---~------------------------------------------------------------n~r~~~~~~Lr~ 487 (678)
T KOG1293|consen 471 TDPD---F------------------------------------------------------------NSRANSLWVLRH 487 (678)
T ss_pred cCCC---c------------------------------------------------------------hHHHHHHHHHHH
Confidence 6652 1 125677899999
Q ss_pred hccCChhhHHHHHhhCcH-HHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 040681 372 LARGSVANSRRISETKGL-LCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL 450 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l-~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~ 450 (594)
+.-+.++..+.....+.- ..++.+.++++..||+.|...|.|+++.....- . |.... .+.+++.....++-.
T Consensus 488 l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~sv---d--fll~~--~~~~ld~i~l~lk~a 560 (678)
T KOG1293|consen 488 LMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSV---D--FLLEK--FKDVLDKIDLQLKIA 560 (678)
T ss_pred HHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHH---H--HHHHh--hhHHHHHHHHHHhhc
Confidence 865555544444433333 455566678889999999999999984433222 2 11111 122333333333322
Q ss_pred CChhhHHHHHHHHHHhhcCChhhhh----ccHHHHHHh---c-----cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 451 DSPTLQIPAIKSIGSLARTFPARET----RVIGPLVAH---L-----SHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 451 ~~~~v~~~a~~aL~~La~~~~~~~~----~~i~~Lv~l---L-----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
....+.+....-+.++....+..+. |..+.++.. + .+.......++.|.+.|+..++.. .+..+.+
T Consensus 561 ~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~--s~~dr~~ 638 (678)
T KOG1293|consen 561 IGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSS--SNFDRSN 638 (678)
T ss_pred cCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCC--cccchhh
Confidence 2233333333333333322221122 333333321 1 345667888999999999886553 3445555
Q ss_pred HH-cCChHHHH
Q 040681 519 IE-FNAVPPLM 528 (594)
Q Consensus 519 ~~-~g~i~~Lv 528 (594)
.- .++..+.+
T Consensus 639 ~~~n~i~e~~~ 649 (678)
T KOG1293|consen 639 LKLNCIWELNN 649 (678)
T ss_pred ccccceechhh
Confidence 43 33444333
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0031 Score=62.97 Aligned_cols=276 Identities=16% Similarity=0.146 Sum_probs=165.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
..+++.+|++.++.+|..|+..|..+... ..+.... +.-.++.|.+|++... + -+.|+++|.|++.++..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHhhHHHHHHH
Confidence 45688899999999999999998888755 2222221 2345788999998877 4 778999999999999999998
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH------cCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR------ENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
.+. .+..++..+.++....-.-.+..|.||+..+..+...... .|.++.....+..+.- .+
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n-~~----------- 146 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYN-AY----------- 146 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccc-cc-----------
Confidence 877 7777777777775566677888999999866444433322 1122222222221100 00
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.. ....+-.+.||++ .+.-++.+.+...++
T Consensus 147 ------------------------------------------------a~-f~ylA~vf~nls~-~~~gR~l~~~~k~~p 176 (353)
T KOG2973|consen 147 ------------------------------------------------AE-FHYLAPVFANLSQ-FEAGRKLLLEPKRFP 176 (353)
T ss_pred ------------------------------------------------cc-hhHHHHHHHHHhh-hhhhhhHhcchhhhh
Confidence 00 1223556677754 455577666665332
Q ss_pred --HHHHHhhhCCHHHH-HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 391 --CLAKLVEKEQGELQ-FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 391 --~L~~LL~~~~~~v~-~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+..+ .+.+..++ ...+++|.|+|.-+. .... ....+ -.+.+.++ .=||
T Consensus 177 ~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~----~h~~-lL~e~---~~lLp~iL-------------------lPla 228 (353)
T KOG2973|consen 177 DQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAK----LHEV-LLDES---INLLPAIL-------------------LPLA 228 (353)
T ss_pred Hhhhhcc-cccchhhhccchHHHHHhhhccch----hHHH-Hhcch---HHHHHHHH-------------------hhcC
Confidence 22222 23444554 367889999873322 2221 11110 11222222 2223
Q ss_pred cCChhhhh--ccHHHHHHhc-----cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 468 RTFPARET--RVIGPLVAHL-----SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 468 ~~~~~~~~--~~i~~Lv~lL-----~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+..+-.+. .-+|.=+++| .+.++.+++.-..+|.-+++ ..+.+.++..-|+.++++-++.+.
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca------T~~GRe~lR~kgvYpilRElhk~e 297 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA------TRAGREVLRSKGVYPILRELHKWE 297 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh------hhHhHHHHHhcCchHHHHHHhcCC
Confidence 22111121 2233333777 35688999999999998877 245566666677888888888553
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0014 Score=70.03 Aligned_cols=310 Identities=15% Similarity=0.135 Sum_probs=178.4
Q ss_pred CCcchHHHHHHHH-HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC
Q 040681 151 NDPMLSWVWSYIA-AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND 229 (594)
Q Consensus 151 ~~~i~~~i~~lv~-~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~ 229 (594)
.+.|...||.+|+ .+++++-.-|..|+.+++++..+-.+....-+=..++|.+..+..++. --++..++|+++.|+.+
T Consensus 360 gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 360 GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHH
Confidence 4556667888887 567777667777899999998764333333333578888888888776 88999999999999863
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHH--HcCChhhHHHhhhcCCcCCCccCcc
Q 040681 230 QERVRVIVSELGVPTIVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFA--RENVIRPLVTLLSFETFVDDPRANS 304 (594)
Q Consensus 230 ~~~~~~iv~~g~i~~Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~v~ 304 (594)
....|-.+|-+++.+.-+--| .|.+..++.|...||..+-++.-...- -..-.+.++.-|-.++.+..
T Consensus 439 --va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~----- 511 (858)
T COG5215 439 --VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL----- 511 (858)
T ss_pred --HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc-----
Confidence 222333466677777655444 788899999999999876432221100 01122333333222211000
Q ss_pred chhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHH
Q 040681 305 GKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRI 383 (594)
Q Consensus 305 ~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i 383 (594)
.|. .++..+..+|..|-.-. +.+...+
T Consensus 512 ---------------------------------------------Ne~-------n~R~s~fsaLgtli~~~~d~V~~~~ 539 (858)
T COG5215 512 ---------------------------------------------NES-------NLRVSLFSALGTLILICPDAVSDIL 539 (858)
T ss_pred ---------------------------------------------cch-------hHHHHHHHHHHHHHhhcchhHHHHH
Confidence 000 11233333333321111 1111111
Q ss_pred Hh---------hCcHHHHHHHhhhCC----HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC
Q 040681 384 SE---------TKGLLCLAKLVEKEQ----GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL 450 (594)
Q Consensus 384 ~e---------~g~l~~L~~LL~~~~----~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~ 450 (594)
+. ...+..+-+.+..++ +++|.|-+..|..+.+- ..++++ +....+++.++++|.+.
T Consensus 540 a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~--~~~~ie--------~v~D~lm~Lf~r~les~ 609 (858)
T COG5215 540 AGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT--RRRDIE--------DVEDQLMELFIRILEST 609 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh--cCCCcc--------cHHHHHHHHHHHHHhcc
Confidence 00 112333333333322 35666666666433211 111111 22334677788899888
Q ss_pred CChhhHHHHHHHHHHhhc----CChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHH
Q 040681 451 DSPTLQIPAIKSIGSLAR----TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPP 526 (594)
Q Consensus 451 ~~~~v~~~a~~aL~~La~----~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~ 526 (594)
++..+-.....++++|+. .|......++|.|.+.|...+..|.-.|+..++.++-. -+..-.+....-...
T Consensus 610 ~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlant-----l~~df~~y~d~~ms~ 684 (858)
T COG5215 610 KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANT-----LGTDFNIYADVLMSS 684 (858)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHH
Confidence 666777888889999986 33333447899999999888888999999998888641 111112222334567
Q ss_pred HHHhccCCc
Q 040681 527 LMRLLRGND 535 (594)
Q Consensus 527 Lv~lL~~~~ 535 (594)
|++.|.+..
T Consensus 685 LvQ~lss~~ 693 (858)
T COG5215 685 LVQCLSSEA 693 (858)
T ss_pred HHHHhcChh
Confidence 888888653
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0019 Score=67.62 Aligned_cols=204 Identities=26% Similarity=0.336 Sum_probs=149.4
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
..++.+++++.+.+ ..++..+++.++.+.. .-+++.+..+|.+.++.+|..++.+|+++- ++
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----- 104 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----- 104 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-----
Confidence 57889999999987 9999999999888765 346999999999999999999999888873 22
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
..+++|+.++..+. +
T Consensus 105 ----~a~~~li~~l~~d~---~---------------------------------------------------------- 119 (335)
T COG1413 105 ----EAVPPLVELLENDE---N---------------------------------------------------------- 119 (335)
T ss_pred ----hHHHHHHHHHHcCC---c----------------------------------------------------------
Confidence 36889999987521 1
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCH------------HHHHHHHHHHHHHHHHhcCCHHHH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG------------ELQFNCLMTIMEITAAAESNADLR 425 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~------------~v~~~A~~aL~nL~~~~~~~~~~r 425 (594)
..++..++++|..+ ++.. ++..++..+.+... .++..+..++.++- +
T Consensus 120 -~~vR~~aa~aL~~~--~~~~---------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-----~---- 178 (335)
T COG1413 120 -EGVRAAAARALGKL--GDER---------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-----D---- 178 (335)
T ss_pred -HhHHHHHHHHHHhc--Cchh---------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-----C----
Confidence 13467788888887 3333 47777777776542 24444555554331 1
Q ss_pred HHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 426 RAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 426 ~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..++.+...+.... ..++..|+.+|+.+.... ..+.+.++..+.+.+..++..++.+|+.+-.
T Consensus 179 -----------~~~~~~l~~~l~~~~-~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 179 -----------PEAIPLLIELLEDED-ADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred -----------hhhhHHHHHHHhCch-HHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 224566666776555 789999999999998422 2567889999999999999999999998854
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhccCCch
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~ 536 (594)
...+..++..+...+.
T Consensus 243 ---------------~~~~~~l~~~l~~~~~ 258 (335)
T COG1413 243 ---------------EEAVDALAKALEDEDV 258 (335)
T ss_pred ---------------chhHHHHHHHHhccch
Confidence 2345666676766655
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00038 Score=61.07 Aligned_cols=95 Identities=14% Similarity=0.031 Sum_probs=83.9
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
.+..||.-.....+.+.+++...-|.|++.|+.+-..+.+..++..++.-|...+..+.+.+...|+|+|- ++.+...|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHH
Confidence 34556665555545999999999999999999999999999999999999999999999999999999998 67899999
Q ss_pred HHcCChhhHHHhhhcC
Q 040681 279 ARENVIRPLVTLLSFE 294 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~ 294 (594)
.++++++..+..+.++
T Consensus 96 ~ea~g~plii~~lssp 111 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSP 111 (173)
T ss_pred HHhcCCceEEeecCCC
Confidence 9999999988887665
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.002 Score=74.26 Aligned_cols=194 Identities=19% Similarity=0.216 Sum_probs=130.8
Q ss_pred hHHHHH----hhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHH
Q 040681 200 VPPLLK----LLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DAL 273 (594)
Q Consensus 200 I~~Lv~----LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~ 273 (594)
.|+++. +|.+.+ ..-+..+..||+.++. ..+.-.... ...++..+..|+++++.||-.|+.+++.|+.+ .|+
T Consensus 346 ~p~~~~~l~~~l~S~~-w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~ 423 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTE-WKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE 423 (1075)
T ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH
Confidence 555544 567777 8899999999999987 444433333 34688888999999999999999999999875 455
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
.+....+ -.++.|+..+.+. ++
T Consensus 424 iqk~~~e-~l~~aL~~~ld~~---~~------------------------------------------------------ 445 (1075)
T KOG2171|consen 424 IQKKHHE-RLPPALIALLDST---QN------------------------------------------------------ 445 (1075)
T ss_pred HHHHHHH-hccHHHHHHhccc---Cc------------------------------------------------------
Confidence 5555533 3566777777544 11
Q ss_pred ChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH-HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcC
Q 040681 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL-CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTN 432 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~-~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~ 432 (594)
..++..|+.|+-|++...+...-.=.-.+.+. .|..|++++++.+|+.++.+|...+..++ . .|.
T Consensus 446 -----~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~------~-~F~-- 511 (1075)
T KOG2171|consen 446 -----VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ------E-KFI-- 511 (1075)
T ss_pred -----hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh------h-hhH--
Confidence 13467788889887543332111111123444 33334567889999999999988775443 2 244
Q ss_pred ChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 433 SPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 433 ~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
|....+++.|.++|.+.++.+.+.-..+++-+++.
T Consensus 512 -pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisl 546 (1075)
T KOG2171|consen 512 -PYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSL 546 (1075)
T ss_pred -hHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHH
Confidence 35678999999999988877766666665555553
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=9e-05 Score=61.14 Aligned_cols=86 Identities=26% Similarity=0.340 Sum_probs=69.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
|..|+..| .+.++.+|..|+.+|+.+... ..++.|++++++++ +.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDED-PMVRRAAARALGRIGD-------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC--------
Confidence 34577888 788999999999999955321 45999999998888 9999999999999853
Q ss_pred HhcCCHHHHHHhhcCC-CHHHHHHHHHHHH
Q 040681 237 VSELGVPTIVNVLSDS-IMKVQIQVASLVA 265 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~ 265 (594)
..+++.|.+++.++ +..++..|+.+|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34799999999886 6667999988874
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0012 Score=74.86 Aligned_cols=239 Identities=20% Similarity=0.184 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHH-HhhCChhHHHHHHhcCCHHHHHHhhcC
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALY-NIANDQERVRVIVSELGVPTIVNVLSD 251 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~-~La~~~~~~~~iv~~g~i~~Lv~lL~~ 251 (594)
|..|+.-|.....-.+-....-...|..|..++||+++. .+++---+..=. -|+-|+.+...+++++|-..++++|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 555666665444333444445556799999999999998 777765554333 356798899999999999999999987
Q ss_pred -C--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCC
Q 040681 252 -S--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSK 328 (594)
Q Consensus 252 -~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g 328 (594)
. +++-|..||-+|+-++.+.+..|....+.+.+..-+++|+++. +
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~---~----------------------------- 613 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP---E----------------------------- 613 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc---c-----------------------------
Confidence 3 6799999999999999987778888777776666666665531 1
Q ss_pred CcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHH
Q 040681 329 NYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCL 408 (594)
Q Consensus 329 ~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~ 408 (594)
| -++..++-+|+.|-...++.+-.-++.++.+.|..+|.++-++|+..|.
T Consensus 614 ---p---------------------------LLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAV 663 (1387)
T KOG1517|consen 614 ---P---------------------------LLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAV 663 (1387)
T ss_pred ---H---------------------------HHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHH
Confidence 1 1345566677777666777777778999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc---HHHHHHhc
Q 040681 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV---IGPLVAHL 485 (594)
Q Consensus 409 ~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~---i~~Lv~lL 485 (594)
.||.-+-.....+ |-.+ ..+++..+.+ . + ..+. .+.-+ .-.++.++
T Consensus 664 FALgtfl~~~~d~-------fde~----~~~~~~~~~l-~--~-~~~~----------------~E~~i~~~~~~ll~~v 712 (1387)
T KOG1517|consen 664 FALGTFLSNGSDN-------FDEQ----TLVVEEEIDL-D--D-ERTS----------------IEDLIIKGLMSLLALV 712 (1387)
T ss_pred HHHHHHhcccccc-------cchh----hhhhhhhhcc-h--h-hhhh----------------HHHHHHhhHHHHHHHH
Confidence 9998665322111 1111 1133333321 0 0 0000 01111 24777888
Q ss_pred cCCCHHHHHHHHHHHHHhcC
Q 040681 486 SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 486 ~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+++++-|+.|.+.+|..++.
T Consensus 713 sdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 713 SDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hccchHHHHHHHHHHHHHHH
Confidence 99999999999999999987
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=60.79 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII 519 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~ 519 (594)
++.|++.|.++.++.++..++.+|+.+. ...+++.|++++++.++.|+.+|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRIGD-------------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 4678888866666999999999999654 44789999999999999999999999999843
Q ss_pred HcCChHHHHHhccCCch--HhHhHH
Q 040681 520 EFNAVPPLMRLLRGNDR--TQLHGL 542 (594)
Q Consensus 520 ~~g~i~~Lv~lL~~~~~--vq~~Al 542 (594)
..+++.|.+++.+.+. ++..|.
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3488999999986543 666554
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=8.7e-05 Score=51.67 Aligned_cols=40 Identities=40% Similarity=0.640 Sum_probs=36.5
Q ss_pred chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 188 DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 188 ~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
+.++..+++.|+|++|+++|++++ +++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~-~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC
Confidence 458889999999999999999877 9999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0027 Score=65.92 Aligned_cols=242 Identities=12% Similarity=0.120 Sum_probs=155.0
Q ss_pred HHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC
Q 040681 164 AIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIANDQERVRVIVSELG 241 (594)
Q Consensus 164 ~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~ 241 (594)
.+++ .+.+...-|+.+|..+.+. +++|-.++.++|+..|+..|. ....-.+|-+...+++.|+.++.-.+.+-..+.
T Consensus 164 ~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~l 242 (442)
T KOG2759|consen 164 QLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDL 242 (442)
T ss_pred HHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccH
Confidence 4444 6677888899999999988 899999999999999999884 332378899999999999999888888888889
Q ss_pred HHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCH------HhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH--
Q 040681 242 VPTIVNVLSDS-IMKVQIQVASLVARMAEHDA------LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI-- 312 (594)
Q Consensus 242 i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l-- 312 (594)
|+.|+.++++. ..+|..-+..++.|+....+ +....+..++ +++-+++|...--.+.. +.. -+..+
T Consensus 243 i~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDED--L~~--di~~L~e 317 (442)
T KOG2759|consen 243 IQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDED--LVD--DIEFLTE 317 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHH--HHH--HHHHHHH
Confidence 99999999977 78899999999999998664 2334455444 55556666543111111 000 00000
Q ss_pred HHHhhhhc---ccccc---cCCCcccc-cchhcc-ccCCC--ccccc-----------cccCChHHHHHHHHHHHHHHHH
Q 040681 313 VQINKEME---KNSFV---GSKNYRPY-LYSEYC-SSRSG--QNRKD-----------RENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 313 ~l~~~~~~---~~~~~---~~g~~~~L-~~~~~~-~s~~~--~~~~~-----------~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
-+.+.... -+.+. .+|..+.- ++.... ++.+. .+-+. ....||.+ ...|+.=++.
T Consensus 318 ~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i----L~VAc~DIge 393 (442)
T KOG2759|consen 318 KLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII----LCVACHDIGE 393 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce----eehhhhhHHH
Confidence 00000000 01111 33443311 000000 00000 00000 12223322 3345555666
Q ss_pred hccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 372 LARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
..+..|+.+..+...||=..+++||.+++++|+.+|..|+.-|-
T Consensus 394 ~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 394 YVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 65666887888889999999999999999999999999997654
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.021 Score=63.53 Aligned_cols=325 Identities=17% Similarity=0.211 Sum_probs=169.6
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh
Q 040681 152 DPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE 231 (594)
Q Consensus 152 ~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~ 231 (594)
+.+-.+..+.|....+.+.++|.----+|...|..++...- =-|..+-+-|++++ +.++..|.++|..+=
T Consensus 67 ~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-----LSIntfQk~L~DpN-~LiRasALRvlSsIR---- 136 (968)
T KOG1060|consen 67 KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-----LSINTFQKALKDPN-QLIRASALRVLSSIR---- 136 (968)
T ss_pred CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-----eeHHHHHhhhcCCc-HHHHHHHHHHHHhcc----
Confidence 33334455566666677777777776777666665443211 13566677788888 888865555555432
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccc-hh-h-
Q 040681 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSG-KQ-S- 308 (594)
Q Consensus 232 ~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~-~~-s- 308 (594)
..++..=.+-.+-+...+.++-||..||.+|-+|-+-+++-+.++.+ +|. .||.+.++.--..++.. +. |
T Consensus 137 --vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e--~I~---~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 137 --VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE--VIK---KLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred --hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH--HHH---HHhcCCCCcchhHHHHHHHHhch
Confidence 12221111222333445668899999999999998877766665544 233 23333321100000000 00 0
Q ss_pred ---------HHHHHHHhhhhcc--ccc--------ccCCCccccc-chhcc-ccCC------CccccccccCChHHHH--
Q 040681 309 ---------IHTIVQINKEMEK--NSF--------VGSKNYRPYL-YSEYC-SSRS------GQNRKDRENEKPEVKI-- 359 (594)
Q Consensus 309 ---------i~~l~l~~~~~~~--~~~--------~~~g~~~~L~-~~~~~-~s~~------~~~~~~~~~~dp~~k~-- 359 (594)
.|.+|..-...++ +.+ ...+...|.. ...++ -+.+ +...+.....||..+.
T Consensus 210 erldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL 289 (968)
T KOG1060|consen 210 ERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLL 289 (968)
T ss_pred hHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHH
Confidence 0111100000000 000 0111111100 00000 0000 0001111122333321
Q ss_pred ------------HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH-
Q 040681 360 ------------KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR- 426 (594)
Q Consensus 360 ------------~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~- 426 (594)
.+.-.++++.|.++..+ ++ .+.+..|+.||.+. .++|+- .|+||+.++..++.+-.
T Consensus 290 ~stkpLl~S~n~sVVmA~aql~y~lAP~~-~~------~~i~kaLvrLLrs~-~~vqyv---vL~nIa~~s~~~~~lF~P 358 (968)
T KOG1060|consen 290 QSTKPLLQSRNPSVVMAVAQLFYHLAPKN-QV------TKIAKALVRLLRSN-REVQYV---VLQNIATISIKRPTLFEP 358 (968)
T ss_pred HhccHHHhcCCcHHHHHHHhHHHhhCCHH-HH------HHHHHHHHHHHhcC-Ccchhh---hHHHHHHHHhcchhhhhh
Confidence 23456788899986422 22 23478889988754 455553 33343433344432211
Q ss_pred ---Hhhhc-------------------CChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHh
Q 040681 427 ---AAFKT-------------------NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAH 484 (594)
Q Consensus 427 ---~~~~~-------------------~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~l 484 (594)
..|+. +..-...++..+..++++++ -.+...++++||..+..........+.-||.+
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d-~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~L 437 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD-RSFAAAAVKAIGRCASRIGSVTDTCLNGLVQL 437 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHhhCchhhHHHHHHHHH
Confidence 01111 11114456667777887777 46888999999999976555555778999999
Q ss_pred ccCCCHHHHHHHHHHHHHhcC
Q 040681 485 LSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 485 L~~~~~~v~~~Aa~aL~nl~~ 505 (594)
|.+.+..|..+|+..|..+..
T Consensus 438 lsshde~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 438 LSSHDELVVAEAVVVIKRLLQ 458 (968)
T ss_pred HhcccchhHHHHHHHHHHHHh
Confidence 999999999999999999976
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00019 Score=49.94 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=36.4
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 230 QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 230 ~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
++++..+++.|++++|+++|++++.+++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 457889999999999999999989999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.037 Score=63.25 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhccCchhHHHHH----hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHh
Q 040681 173 RIEAAIELASLAKDNDRNKKIIV----EEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNV 248 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~----~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~l 248 (594)
..-++.+|+|+...|++....+- -.|..+.+..+|.....+.++..|..++..+..+.++...++..|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 34578999999998886654433 23777888888887655899999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 249 L~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
|.+ -+..|+.+..+|+.|+++. +..+.-.++|++..+..++-..
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~ 1865 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLT 1865 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhcc
Confidence 976 4667899999999999854 6666667889988888776444
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.027 Score=56.70 Aligned_cols=281 Identities=16% Similarity=0.166 Sum_probs=170.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhH----HHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNK----KIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~----~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
|-.-|..+|..+|.-|+..++.+..+++.|. ..++..|..+.++..+...+ .++-..|...|..++..++.-..|
T Consensus 87 LQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrialfpaaleai 165 (524)
T KOG4413|consen 87 LQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIALFPAALEAI 165 (524)
T ss_pred HHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHHHHHHh
Confidence 3334556788899999999988888777443 34557788888999888877 899999999999999999998888
Q ss_pred HhcCCHHHHH--HhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIV--NVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv--~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
++.....++- .+--..+.-+|-++...+-.+.+-+|+.....-..|.+..|..-|... ++. +
T Consensus 166 FeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDt-----------L-- 229 (524)
T KOG4413|consen 166 FESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDT-----------L-- 229 (524)
T ss_pred cccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cce-----------e--
Confidence 8766554432 222223455677788888888888887777776667655555444322 111 0
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+..++......|+. ....++.+..+|.+..+..
T Consensus 230 ----------------------------------------------VianciElvteLae-teHgreflaQeglIdlicn 262 (524)
T KOG4413|consen 230 ----------------------------------------------VIANCIELVTELAE-TEHGREFLAQEGLIDLICN 262 (524)
T ss_pred ----------------------------------------------ehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHH
Confidence 12233333344432 2334666667777777777
Q ss_pred HhhhC--CHHHHHHHHHHHHHHH----HHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 395 LVEKE--QGELQFNCLMTIMEIT----AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 395 LL~~~--~~~v~~~A~~aL~nL~----~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++... ++--+..+.+....+- -+......+.++ ..-.++..+..+...| ++.++.|+-++|-|-.
T Consensus 263 IIsGadsdPfekfralmgfgkffgkeaimdvseeaicea--------liiaidgsfEmiEmnD-pdaieaAiDalGilGS 333 (524)
T KOG4413|consen 263 IISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEA--------LIIAIDGSFEMIEMND-PDAIEAAIDALGILGS 333 (524)
T ss_pred HhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHH--------HHHHHHhhHHhhhcCC-chHHHHHHHHHHhccC
Confidence 76532 2322333333322221 000011112221 1225566666666666 9999999999999987
Q ss_pred CChhhhh----c--cHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 469 TFPARET----R--VIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 469 ~~~~~~~----~--~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
+....+. | ....++.-. +.....-+..+..+|.+++. ..++.++++
T Consensus 334 nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag-elrlkpeqi 386 (524)
T KOG4413|consen 334 NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG-ELRLKPEQI 386 (524)
T ss_pred CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc-cccCChhhc
Confidence 6654332 2 233333333 33334456677789999876 555444443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=58.03 Aligned_cols=228 Identities=18% Similarity=0.242 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVN 247 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~ 247 (594)
+..-+.+.+.+|+.... +.+||.|+..|... ..+.++.+|+.+|+.+. ++ +.++.+-+
T Consensus 49 s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~---------~~~~~l~k 107 (289)
T KOG0567|consen 49 SALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP---------ESLEILTK 107 (289)
T ss_pred hhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch---------hhHHHHHH
Confidence 33455566777766653 36899999977653 23788999999999988 43 34667777
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccC
Q 040681 248 VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGS 327 (594)
Q Consensus 248 lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~ 327 (594)
..+++.+.|++.+..++.++-..+ .+...--..++.. . |+..-.+..+++.+-...+
T Consensus 108 ~~~dp~~~v~ETc~lAi~rle~~~-----~~~~~~~~~p~~S--v------dPa~p~~~ssv~~lr~~ll---------- 164 (289)
T KOG0567|consen 108 YIKDPCKEVRETCELAIKRLEWKD-----IIDKIANSSPYIS--V------DPAPPANLSSVHELRAELL---------- 164 (289)
T ss_pred HhcCCccccchHHHHHHHHHHHhh-----ccccccccCcccc--C------CCCCccccccHHHHHHHHH----------
Confidence 777778889998888888874322 1111000111111 0 1110011112222200000
Q ss_pred CCcccccchhccccCCCccccccccCChHHHH-HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHH
Q 040681 328 KNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI-KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFN 406 (594)
Q Consensus 328 g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~-~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~ 406 (594)
| +++. .-+..+..+|+|+ |.++ +|..|+.-+..++.-.|..
T Consensus 165 --------------------------d-~t~~l~~Ry~amF~LRn~--g~Ee---------aI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 165 --------------------------D-ETKPLFERYRAMFYLRNI--GTEE---------AINALIDGLADDSALFRHE 206 (289)
T ss_pred --------------------------h-cchhHHHHHhhhhHhhcc--CcHH---------HHHHHHHhcccchHHHHHH
Confidence 0 0000 0133455666666 4454 5777777777777778888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc
Q 040681 407 CLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS-PTLQIPAIKSIGSLARTFPARETRVIGPLVAHL 485 (594)
Q Consensus 407 A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~-~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL 485 (594)
++.++..|- . +..++.|.+.|..... +-|+..|+.+||.++ ....++.|.+.+
T Consensus 207 vAfVfGQl~-----s---------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa------~e~~~~vL~e~~ 260 (289)
T KOG0567|consen 207 VAFVFGQLQ-----S---------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIA------DEDCVEVLKEYL 260 (289)
T ss_pred HHHHHhhcc-----c---------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc------CHHHHHHHHHHc
Confidence 888886653 1 1245566666554432 789999999999998 346788999999
Q ss_pred cCCCHHHHHHHHHHHHHhc
Q 040681 486 SHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 486 ~~~~~~v~~~Aa~aL~nl~ 504 (594)
++.++-|++.+..+|.-.-
T Consensus 261 ~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 261 GDEERVVRESCEVALDMLE 279 (289)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 9999989988888887653
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=64.49 Aligned_cols=221 Identities=17% Similarity=0.207 Sum_probs=152.5
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
-+-++.||.++. +-++..|+.+|..+.. -++. + ..++|-|+.-|.++++.|+..|+.+++.|+..+|.+--.
T Consensus 146 a~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 345778899988 9999999999998875 3433 2 125799999999999999999999999999988844222
Q ss_pred HHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHH
Q 040681 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVK 358 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k 358 (594)
.-|.+.++|.+.+ +.
T Consensus 219 ----LAP~ffkllttSs---NN---------------------------------------------------------- 233 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSS---NN---------------------------------------------------------- 233 (877)
T ss_pred ----ccHHHHHHHhccC---CC----------------------------------------------------------
Confidence 3466677765442 10
Q ss_pred HHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCH-HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 359 IKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG-ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 359 ~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~-~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
++........++|+--.|-.. ...+++|..++++... .+.+.|..++..- .+.++.++.-. .++
T Consensus 234 -WmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~-s~s~g~~d~~a--------siq 298 (877)
T KOG1059|consen 234 -WVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAV-SMSSGMSDHSA--------SIQ 298 (877)
T ss_pred -eehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheee-hhccCCCCcHH--------HHH
Confidence 122233555666654444432 2368899999987653 5566666665321 11122111112 134
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.+|..|-.++.+.| +.++--++-+++.+..+.+..-...-..++++|++.+..++..|.-.|.-++..+|
T Consensus 299 LCvqKLr~fiedsD-qNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkN 368 (877)
T KOG1059|consen 299 LCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKN 368 (877)
T ss_pred HHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhh
Confidence 57888888887666 88888899999999877664434455778899999999999999999999987444
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.036 Score=58.61 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=171.3
Q ss_pred HHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC--CHH
Q 040681 178 IELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS--IMK 255 (594)
Q Consensus 178 ~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~--~~~ 255 (594)
..|..+.+.++..+..+.-....+.+..++-+++ .+++-.+.++++.+..+.+.-..+.+.+.--.++.-|..+ ...
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence 4455556666655555444344455554454555 8999999999999999999999999988777777777654 444
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccc
Q 040681 256 VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLY 335 (594)
Q Consensus 256 v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~ 335 (594)
=|++|...+..+.... .....+ -.|.++.+|.+.... +
T Consensus 84 ER~QALkliR~~l~~~-~~~~~~-~~~vvralvaiae~~---~------------------------------------- 121 (371)
T PF14664_consen 84 EREQALKLIRAFLEIK-KGPKEI-PRGVVRALVAIAEHE---D------------------------------------- 121 (371)
T ss_pred HHHHHHHHHHHHHHhc-CCcccC-CHHHHHHHHHHHhCC---c-------------------------------------
Confidence 5778999888887652 122222 235566677665443 1
Q ss_pred hhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 336 SEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 336 ~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
+.++..|..+|..++..+|+ .+++.||+..|.+.+-.+..++....+.++..+-
T Consensus 122 -----------------------D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 122 -----------------------DRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred -----------------------hHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 24577888999999877665 5678999999999998776667778888888775
Q ss_pred HHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC------CCh--hhHHHHHHHHHHhhcCChhhh------hccHHHH
Q 040681 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL------DSP--TLQIPAIKSIGSLARTFPARE------TRVIGPL 481 (594)
Q Consensus 416 ~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~------~~~--~v~~~a~~aL~~La~~~~~~~------~~~i~~L 481 (594)
++|..|+ -+.... -++.++....+. ++. +-...+..++..+-++++..- -..+..|
T Consensus 176 ----d~p~tR~-yl~~~~-----dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksL 245 (371)
T PF14664_consen 176 ----DSPRTRK-YLRPGF-----DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSL 245 (371)
T ss_pred ----CCcchhh-hhcCCc-----cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHH
Confidence 6677777 233211 244444444333 112 355678888888888776421 2678999
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcC
Q 040681 482 VAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 482 v~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+..|.-+++++++.....+..+-.
T Consensus 246 v~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 246 VDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHC
Confidence 999999999999988888877644
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.074 Score=58.08 Aligned_cols=288 Identities=18% Similarity=0.192 Sum_probs=170.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHH----HHHHHhhCChhHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAA----TALYNIANDQERV 233 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~----~aL~~La~~~~~~ 233 (594)
...+...+...+...+..|+..+..+..++ .-..+.+.+.+..|-+.+++.++...++.+. .+.++|..
T Consensus 136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----- 208 (569)
T KOG1242|consen 136 LELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----- 208 (569)
T ss_pred HHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-----
Confidence 344566777888899999999999988763 3355667788888888887765333333122 22233332
Q ss_pred HHHHhcCCHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 234 RVIVSELGVPTIVNVL---SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL---~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
-.+...+|.+-.+| .+...+||+.+..+...+-..- ...+++.++--+-..
T Consensus 209 --~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--------~~~aVK~llpsll~~---------------- 262 (569)
T KOG1242|consen 209 --PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--------SAYAVKLLLPSLLGS---------------- 262 (569)
T ss_pred --CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc--------CcchhhHhhhhhHHH----------------
Confidence 12334444444444 4557888888877766654321 123444333221111
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
+. + .|=..+..++..|+.++.. ...+-......++|
T Consensus 263 -l~---------------------------------------~---~kWrtK~aslellg~m~~~-ap~qLs~~lp~iiP 298 (569)
T KOG1242|consen 263 -LL---------------------------------------E---AKWRTKMASLELLGAMADC-APKQLSLCLPDLIP 298 (569)
T ss_pred -HH---------------------------------------H---HhhhhHHHHHHHHHHHHHh-chHHHHHHHhHhhH
Confidence 00 0 0001255567777777533 33355566778999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc-----------------------------CChhhHHHHH
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT-----------------------------NSPAAKAVVD 441 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~-----------------------------~~~~~~~~v~ 441 (594)
.+...|.+.+++++..+-.+|-.++..- .|+++.+ +.+ ..|...-+++
T Consensus 299 ~lsevl~DT~~evr~a~~~~l~~~~svi-dN~dI~~--~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvp 375 (569)
T KOG1242|consen 299 VLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPDIQK--IIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVP 375 (569)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHHHHH--HHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHH
Confidence 9999999999999999999999988765 5777766 221 1111122233
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh--cc----HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPARET--RV----IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~--~~----i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
.|-+-+... +......++..++|+|.-.+..+. .+ +|.|-..+.+..+++|..++.||+.+.- ..
T Consensus 376 iL~R~l~eR-st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e--------~~ 446 (569)
T KOG1242|consen 376 ILKRGLAER-STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE--------RL 446 (569)
T ss_pred HHHHHHhhc-cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH--------HH
Confidence 333333322 367778899999999975432221 22 3444444466689999999999988743 11
Q ss_pred HHHHHcCChHHHHHhccCC
Q 040681 516 KAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 516 ~~i~~~g~i~~Lv~lL~~~ 534 (594)
......+.+|.|...++..
T Consensus 447 g~~~f~d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 447 GEVSFDDLIPELSETLTSE 465 (569)
T ss_pred HhhcccccccHHHHhhccc
Confidence 1111256677777777644
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00041 Score=51.95 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARM 267 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~L 267 (594)
+.++..|+++|++++........-.....++.|+.+|++++.+||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987544433334556899999999999889999999999875
|
... |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.042 Score=59.80 Aligned_cols=276 Identities=13% Similarity=0.125 Sum_probs=170.6
Q ss_pred HHHHHHhhccCchhHHHHHhcCChHHHHHhh---------ccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHH
Q 040681 177 AIELASLAKDNDRNKKIIVEEGGVPPLLKLL---------KETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIV 246 (594)
Q Consensus 177 a~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL---------~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv 246 (594)
+.+|+-+.++ +.+...+....++..|+++= ....+.++..+|.++|+|+-. ++..|..+++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777766 66667777777777777754 223348999999999999987 677899999999999999
Q ss_pred HhhcCC-----CHHHHHHHHHHHHHHhhcCHHhHHHHH-HcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhc
Q 040681 247 NVLSDS-----IMKVQIQVASLVARMAEHDALAQDDFA-RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEME 320 (594)
Q Consensus 247 ~lL~~~-----~~~v~~~aa~aL~~La~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~ 320 (594)
..|+.. +.++.--..++|.=++...+..+..+. +++++..++..|.........
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~-------------------- 140 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK-------------------- 140 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc--------------------
Confidence 999887 788888899999888876666665554 458888888887654211000
Q ss_pred ccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC-
Q 040681 321 KNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE- 399 (594)
Q Consensus 321 ~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~- 399 (594)
.... .....|. .......+.+.+.|+....+.... -.+...++.++.++..-
T Consensus 141 ----------------------~~~~---~~~~~~~-~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l 193 (446)
T PF10165_consen 141 ----------------------SSQE---PTAPSPM-DEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLL 193 (446)
T ss_pred ----------------------cccc---cCCCCcc-hHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHh
Confidence 0000 0000000 123345567888887543222111 12344555555554321
Q ss_pred --------CHHHHHHHHHHHHHHHHHhcCCHHH-------HHHhhhcCChhhHHHHHHHHHHHhc----CC---ChhhHH
Q 040681 400 --------QGELQFNCLMTIMEITAAAESNADL-------RRAAFKTNSPAAKAVVDQLLRVIND----LD---SPTLQI 457 (594)
Q Consensus 400 --------~~~v~~~A~~aL~nL~~~~~~~~~~-------r~~~~~~~~~~~~~~v~~Ll~lL~s----~~---~~~v~~ 457 (594)
......++..+|.|+= -...+. ..+ .. ..+.-..++..|+.+|+. .. -++...
T Consensus 194 ~~~~~~~~l~~~~~~~in~L~nlp---l~~~~~l~~~~~~~~~-~~-~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~ 268 (446)
T PF10165_consen 194 PPPPSSPPLDPPHSHAINALLNLP---LECLDSLLSPKFQQSS-LF-PEGDNMDVVERLLDFLDKRLDKYEALKLDELLT 268 (446)
T ss_pred ccCCCCCcchhhHHHHHHHHhCCC---hHHHhhhhcccCCccc-cc-CCCCChHHHHHHHHHHHHHHHhcCcccchhhHh
Confidence 1356667778887651 111100 000 00 011123466666666653 21 135778
Q ss_pred HHHHHHHHhhcCChhhh---------------------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 458 PAIKSIGSLARTFPARE---------------------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~---------------------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
|.+.+|.++++...... ...-..|++++.+..+.++..++..|..++.
T Consensus 269 PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 269 PLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred hHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 89999999997543211 1346899999988888888888888888754
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00064 Score=50.89 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=42.3
Q ss_pred hhhHHHHHHHHHHhhcCChhhh----hccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 453 PTLQIPAIKSIGSLARTFPARE----TRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
+.++..|+.+||+++...+... ..+++.|+.+|.+++..|+..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999886554332 27889999999999999999999999985
|
... |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.089 Score=58.25 Aligned_cols=229 Identities=17% Similarity=0.248 Sum_probs=148.8
Q ss_pred ccCCcccCCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHH
Q 040681 144 TLPPIASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATAL 223 (594)
Q Consensus 144 ~l~~ia~~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL 223 (594)
||..+..-+=.+.+..+++.+|.+.-+-+|..|...|..+.- +|-.++. ..+|.|+.-|.+++ +.++-.|+.++
T Consensus 132 GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFL---kYPeAlr--~~FprL~EkLeDpD-p~V~SAAV~VI 205 (877)
T KOG1059|consen 132 GLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFL---KYPEALR--PCFPRLVEKLEDPD-PSVVSAAVSVI 205 (877)
T ss_pred ccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH---hhhHhHh--hhHHHHHHhccCCC-chHHHHHHHHH
Confidence 444444444445677888999999999999999999877764 3334443 56899999999999 99999999999
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCcc
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPR 301 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 301 (594)
|.||+ +|.+--.+ -|.+-++|.+. +-=+.-......++|+-..|.-. ...+++|.+++.+..
T Consensus 206 CELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~------ 269 (877)
T KOG1059|consen 206 CELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTV------ 269 (877)
T ss_pred HHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhH------
Confidence 99998 77654333 57788888765 43456667778888877665322 236889999987652
Q ss_pred CccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHH--HhccCChhh
Q 040681 302 ANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALW--MLARGSVAN 379 (594)
Q Consensus 302 ~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~--~L~~~~~~~ 379 (594)
.++ + ...|..++- ++..|.++.
T Consensus 270 ----AmS---L-------------------------------------------------lYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 270 ----AMS---L-------------------------------------------------LYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred ----HHH---H-------------------------------------------------HHHHHHHheeehhccCCCCc
Confidence 111 0 011111110 333343222
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHH
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPA 459 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a 459 (594)
-..+. =++..|-.++++.++++++-++.|+.-|. .-++..-. +--+.++++|...| +.++..|
T Consensus 294 ~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~---ktHp~~Vq-----------a~kdlIlrcL~DkD-~SIRlrA 356 (877)
T KOG1059|consen 294 SASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKIL---KTHPKAVQ-----------AHKDLILRCLDDKD-ESIRLRA 356 (877)
T ss_pred HHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHh---hhCHHHHH-----------HhHHHHHHHhccCC-chhHHHH
Confidence 22111 14666667778888888888887776665 44553222 24466777777666 7788777
Q ss_pred HHHHHHhh
Q 040681 460 IKSIGSLA 467 (594)
Q Consensus 460 ~~aL~~La 467 (594)
+-.|--+.
T Consensus 357 LdLl~gmV 364 (877)
T KOG1059|consen 357 LDLLYGMV 364 (877)
T ss_pred HHHHHHHh
Confidence 77776665
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.062 Score=56.55 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCHHH--HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 159 WSYIAAIQMGQLSD--RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 159 ~~lv~~L~~~~~~~--~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
..|+.+++..+.+. |.+|+..|..+.. .+|+..|+..| ...++.+-+....++.+...+..|.++-. +++....
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33677778777665 8999999988765 46777777766 55555655666558999999999999987 4567899
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHh
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTL 290 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~l 290 (594)
++..|++..++--.+..++.+...++-+|.|++-+. ...+.-+++..+-+-|.-+
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~L 315 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPL 315 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhh
Confidence 999999999988888889999999999999998763 3455555555554444433
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=54.14 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 040681 216 QSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLS--DSIMKVQIQVASLVARMAEHDALAQDDFARE 281 (594)
Q Consensus 216 ~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~--~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~ 281 (594)
+...+.+|+||+. ++..+..+.+.||||.++..-. ..+|-+++.|.++|.+|+..++++|..+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4456789999997 7788999999999999998764 3489999999999999999999999999863
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.23 Score=55.48 Aligned_cols=348 Identities=16% Similarity=0.140 Sum_probs=187.4
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc----cCCCHHHHHHHHHHHHHhhCChhHHHHHHh-c
Q 040681 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK----ETASSEAQSAAATALYNIANDQERVRVIVS-E 239 (594)
Q Consensus 165 L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~----~~~~~~v~e~A~~aL~~La~~~~~~~~iv~-~ 239 (594)
|.+.-+.....|+.++..++.-.- -.+.-|-|+..|. +..+..+++.++.+||.+|.+-+-....-. .
T Consensus 99 L~~~ep~~~s~Aaq~va~IA~~El-------P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN 171 (859)
T KOG1241|consen 99 LGSPEPRRPSSAAQCVAAIACIEL-------PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN 171 (859)
T ss_pred cCCCCCCccchHHHHHHHHHHhhC-------chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 333344445556666666554211 1234455555443 333246889999999999984332222222 2
Q ss_pred CCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 240 LGVPTIVNVLSD--SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 240 g~i~~Lv~lL~~--~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.++..++.-.+. ++..||-.|..+|.|--. ..+..|...+-...++...-..+
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe---f~~~nF~~E~ern~iMqvvcEat---------------------- 226 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLE---FTKANFNNEMERNYIMQVVCEAT---------------------- 226 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHH---HHHHhhccHhhhceeeeeeeecc----------------------
Confidence 345556655443 378899999999987533 12222211110111111100000
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
...| .+++..|..+|..+....-+..+.-.+...+..-+.-+.
T Consensus 227 ---------------------------------q~~d----~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk 269 (859)
T KOG1241|consen 227 ---------------------------------QSPD----EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK 269 (859)
T ss_pred ---------------------------------cCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0011 244666666776664333332222233334555556667
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHH----HHHhhhcCC---------hhhHHHHHHHHHHHhcCC------ChhhHHH
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADL----RRAAFKTNS---------PAAKAVVDQLLRVINDLD------SPTLQIP 458 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~----r~~~~~~~~---------~~~~~~v~~Ll~lL~s~~------~~~v~~~ 458 (594)
+.++++...+...=+++| +...|+ .. ++-... ++.+.++|.|+.+|...+ ++.+-..
T Consensus 270 s~~deValQaiEFWstic---eEEiD~~~e~~e-~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTIC---EEEIDLAIEYGE-AVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred CCcHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 888888887777766666 221221 11 111111 234578999999998732 3566677
Q ss_pred HHHHHHHhhcCChhhh-hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-
Q 040681 459 AIKSIGSLARTFPARE-TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR- 536 (594)
Q Consensus 459 a~~aL~~La~~~~~~~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~- 536 (594)
|-.+|.-++..-...- ..++|.+=+-+.++++.-+..|+.|++.+--+.. +...+.++ .+++|.++.++....-
T Consensus 346 Ag~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~---~~~Lt~iV-~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE---PDKLTPIV-IQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc---hhhhhHHH-hhhhHHHHHHhcCchhh
Confidence 7777777774221111 1344444446689999999999999999866333 34444444 4689999999984333
Q ss_pred HhHh-HHHHHH---------------HHHHHHHhhhccccccccchHHHHHHHHHHhcc--cccc-cCCCCCCCCC
Q 040681 537 TQLH-GLALEQ---------------ARVLTALEGADRTVVAQHPELKELVSEALYHLN--LYHA-GVHPQRQAYA 593 (594)
Q Consensus 537 vq~~-Al~l~~---------------~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~--~~~~-~~~~~~~~~~ 593 (594)
++.. |..+.+ ..++.+|- + .+.+.|.+-.-.+||+.-+- .|.+ -++++.+++-
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~---~-gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t 493 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALL---E-GLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT 493 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH---H-HhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc
Confidence 4422 222221 11111111 1 13347889999999998884 6666 3345665553
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.013 Score=65.29 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN 228 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~ 228 (594)
...+...++.+++.+|..|+.+...+-. .....+.+.|.++.|-.++.+.+ +.+..+|+.+|..+..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHE 189 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHH
Confidence 4446678889999999999999988754 34567778899999999999887 9999999999999986
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.033 Score=60.98 Aligned_cols=260 Identities=16% Similarity=0.210 Sum_probs=160.3
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH--Hh---cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI--VS---ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i--v~---~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
.++|.|..+|.+++ ...+|-|..||..++.|....-.- .. .-.+|.++++.+++++++|..|..++-..-...
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence 56889999999988 889999999999999865432111 01 125899999999999999999988775543321
Q ss_pred HhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccccc
Q 040681 273 LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDREN 352 (594)
Q Consensus 273 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~ 352 (594)
.+..+. .|..+++.|-.- ..-
T Consensus 206 -~qal~~---~iD~Fle~lFal-------------------------------------------------------anD 226 (885)
T KOG2023|consen 206 -TQALYV---HIDKFLEILFAL-------------------------------------------------------AND 226 (885)
T ss_pred -cHHHHH---HHHHHHHHHHHH-------------------------------------------------------ccC
Confidence 122221 123333322110 001
Q ss_pred CChHHHHHHHHHHHHHHHHhccCChhhHHHH-HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc
Q 040681 353 EKPEVKIKLKIACAEALWMLARGSVANSRRI-SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT 431 (594)
Q Consensus 353 ~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i-~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~ 431 (594)
++|+ ++.+.|++|..|-.-.++ +.+ --.++++.+++.-++.++++-..||.....++ ++ +..+. ...
T Consensus 227 ~~~e----VRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a---eq-pi~~~-~L~- 294 (885)
T KOG2023|consen 227 EDPE----VRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA---EQ-PICKE-VLQ- 294 (885)
T ss_pred CCHH----HHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh---cC-cCcHH-HHH-
Confidence 2333 466778888887432222 111 12356777777778888899889998887665 43 33333 222
Q ss_pred CChhhHHHHHHHHH----------HHhcCC---------------------------------------------ChhhH
Q 040681 432 NSPAAKAVVDQLLR----------VINDLD---------------------------------------------SPTLQ 456 (594)
Q Consensus 432 ~~~~~~~~v~~Ll~----------lL~s~~---------------------------------------------~~~v~ 456 (594)
|....+++.|+. +|++.+ ++.+|
T Consensus 295 --p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR 372 (885)
T KOG2023|consen 295 --PYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR 372 (885)
T ss_pred --HHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh
Confidence 223445665543 333111 14577
Q ss_pred HHHHHHHHHhhcCChhhhh-ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHc--CChHHHHHhccC
Q 040681 457 IPAIKSIGSLARTFPARET-RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF--NAVPPLMRLLRG 533 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~~~~-~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~--g~i~~Lv~lL~~ 533 (594)
...+.+|.-|+.-++..-. -++|.|-+.|.+..+-+++.++.||+.++-|.. +.++.. .-||.|+++|..
T Consensus 373 kCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM-------~g~~p~LpeLip~l~~~L~D 445 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM-------QGFVPHLPELIPFLLSLLDD 445 (885)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh-------hhcccchHHHHHHHHHHhcc
Confidence 7888888888865542222 445666677788999999999999999975322 112211 257778888887
Q ss_pred Cch-HhH
Q 040681 534 NDR-TQL 539 (594)
Q Consensus 534 ~~~-vq~ 539 (594)
..+ |+.
T Consensus 446 KkplVRs 452 (885)
T KOG2023|consen 446 KKPLVRS 452 (885)
T ss_pred Cccceee
Confidence 666 554
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.056 Score=58.24 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=56.7
Q ss_pred HHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHH
Q 040681 178 IELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQ 257 (594)
Q Consensus 178 ~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~ 257 (594)
++...+...|++....+ .|.|-.-|++.- +.++.+++++++.++...- -...++ ..+..|-.+|+++....|
T Consensus 249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k~-emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 249 RATVELLKENSQALLQL-----RPFLNSWLSDKF-EMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHhChHHHHHH-----HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhcchHHHH
Confidence 34444444444443332 234444555544 7899999999999886221 111221 246778888899999999
Q ss_pred HHHHHHHHHHhhcCHH
Q 040681 258 IQVASLVARMAEHDAL 273 (594)
Q Consensus 258 ~~aa~aL~~La~~~~~ 273 (594)
-.|.++|..|+...|+
T Consensus 321 FsA~Riln~lam~~P~ 336 (898)
T COG5240 321 FSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHHHhhCCc
Confidence 9999999999987763
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=52.73 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccc
Q 040681 256 VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLY 335 (594)
Q Consensus 256 v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~ 335 (594)
.+.....+|+|||..++.+|+.+++.|+++.++..+..+ ++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD---~~n----------------------------------- 43 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID---DHN----------------------------------- 43 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC---ccc-----------------------------------
Confidence 356788999999999999999999999999999987554 111
Q ss_pred hhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHh
Q 040681 336 SEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISE 385 (594)
Q Consensus 336 ~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e 385 (594)
..+++.|..|+++|+.+++++++.+.+
T Consensus 44 -----------------------P~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 44 -----------------------PFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred -----------------------HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 135888999999999999999987765
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.075 Score=58.05 Aligned_cols=260 Identities=15% Similarity=0.149 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchh-HHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRN-KKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~-~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
...+.++.........+|..|..+...+.+--+.+ .+. .+|+++.-+.... -..+..++..|+.++......-
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~k-WrtK~aslellg~m~~~ap~qL 289 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAK-WRTKMASLELLGAMADCAPKQL 289 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHh-hhhHHHHHHHHHHHHHhchHHH
Confidence 34444555555666777777777666655431221 111 2455555343334 5678889999999988666666
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
...-...+|.+.+.|-+..++++..+..+|.++++.- ++-+ |.. .+|.|++-+..++-.. ..|++++
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-dN~d-I~~--~ip~Lld~l~dp~~~~-------~e~~~~L-- 356 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-DNPD-IQK--IIPTLLDALADPSCYT-------PECLDSL-- 356 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-ccHH-HHH--HHHHHHHHhcCcccch-------HHHHHhh--
Confidence 6667789999999999999999999999999998743 2333 222 5677777776552000 0011111
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
.. ..... .++.-.+..++-
T Consensus 357 -------------------------------------------------------~~-----ttFV~-~V~~psLalmvp 375 (569)
T KOG1242|consen 357 -------------------------------------------------------GA-----TTFVA-EVDAPSLALMVP 375 (569)
T ss_pred -------------------------------------------------------cc-----eeeee-eecchhHHHHHH
Confidence 11 00000 011122334444
Q ss_pred Hh----hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 395 LV----EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 395 LL----~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
+| ...+.+++..++..+.|+|...+...++-. | .+.+++.|-..+..- .+++|.-+.++|+.+-..-
T Consensus 376 iL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap--f------l~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 376 ILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP--F------LPSLLPGLKENLDDA-VPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh--h------HHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHH
Confidence 44 344567788899999999988754333222 2 233555565665544 4899999999998887533
Q ss_pred hhhh-hccHHHHHHhccCCCHHH-HHHHHHHHHHhc
Q 040681 471 PARE-TRVIGPLVAHLSHRNQEV-ATEAAIALQKFA 504 (594)
Q Consensus 471 ~~~~-~~~i~~Lv~lL~~~~~~v-~~~Aa~aL~nl~ 504 (594)
.... ...+|.+.+.+.+....+ +..++..|+...
T Consensus 447 g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl 482 (569)
T KOG1242|consen 447 GEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVL 482 (569)
T ss_pred HhhcccccccHHHHhhccchhhhhhHHHhhhHHHHH
Confidence 3222 356777777774433322 233444444443
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.013 Score=63.84 Aligned_cols=269 Identities=14% Similarity=0.132 Sum_probs=162.1
Q ss_pred hHHHHH-HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-C---
Q 040681 155 LSWVWS-YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-D--- 229 (594)
Q Consensus 155 ~~~i~~-lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~--- 229 (594)
+..+|. ++..-+.+|..+|..|+..|..+..+ -+..+.+ ....++++++.. ..++..|+.+++-.+. .
T Consensus 196 ~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~-----Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKAC-----YSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHHH-----HHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCc
Confidence 346667 56566778999999999998877654 3333333 345678888887 8999988766655443 1
Q ss_pred --hh-HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC-CcCCCccCccc
Q 040681 230 --QE-RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE-TFVDDPRANSG 305 (594)
Q Consensus 230 --~~-~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~v~~ 305 (594)
.+ ....++ ..+...++..+.+.+..||..|+.+|+.+-..+++.-..-.+ ..+..-++.. +.....
T Consensus 269 ~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrp----- 338 (823)
T KOG2259|consen 269 LERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRP----- 338 (823)
T ss_pred ccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccch-----
Confidence 11 223333 246888999999999999999999999986544332111111 1122211111 000000
Q ss_pred hhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHh
Q 040681 306 KQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISE 385 (594)
Q Consensus 306 ~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e 385 (594)
..+..+|...++++..+...+.+ .++--..|+.
T Consensus 339 --------------------------------k~l~s~GewSsGk~~~advpsee---------------~d~~~~siI~ 371 (823)
T KOG2259|consen 339 --------------------------------KALYSSGEWSSGKEWNADVPSEE---------------DDEEEESIIP 371 (823)
T ss_pred --------------------------------HHHHhcCCcccCccccccCchhh---------------cccccccccc
Confidence 00001122222233322111111 1222445777
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.|+.-.++.-|+++--+|+.+|...++.|+ ...|.+- ...++-|+..+++.. ..|+..|+.+|..
T Consensus 372 sGACGA~VhGlEDEf~EVR~AAV~Sl~~La---~ssP~FA-----------~~aldfLvDMfNDE~-~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 372 SGACGALVHGLEDEFYEVRRAAVASLCSLA---TSSPGFA-----------VRALDFLVDMFNDEI-EVVRLKAIFALTM 436 (823)
T ss_pred ccccceeeeechHHHHHHHHHHHHHHHHHH---cCCCCcH-----------HHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 888888888888777788888888886665 4444221 226677777776554 7888889999888
Q ss_pred hhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 466 LARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
++.... .+...++.+...|.+.+.+++.+.-..|.+.
T Consensus 437 Is~~l~-i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 437 ISVHLA-IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHhe-ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 885422 2235577788888888888888777666654
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.12 Score=56.20 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhC-ChhHHHHHH-hc
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIAN-DQERVRVIV-SE 239 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~-~~~~~~~iv-~~ 239 (594)
...+..+..+|+++|.|+...++..+..+++.|+.+.+++.|+... +.++.--..+.|..++. ..+.+..++ +.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 3457889999999999999999999999999999999999998871 27888888888888775 666777777 45
Q ss_pred CCHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc
Q 040681 240 LGVPTIVNVLSDS-----------------IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 240 g~i~~Lv~lL~~~-----------------~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~ 293 (594)
+++..++..|... +......+..+++|+..+.+..... ...+.++.|+.+|..
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~-~~~~~~~~l~~il~~ 191 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE-EFSPSIPHLVSILRR 191 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch-hhhHHHHHHHHHHHH
Confidence 7888888876321 3345667888899998765433330 123467777777653
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.16 Score=56.63 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=132.6
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChh----HHHHHHhcCCHHHHHHhhcCC-------CHHHHHHHHHHHHHHh
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQE----RVRVIVSELGVPTIVNVLSDS-------IMKVQIQVASLVARMA 268 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~----~~~~iv~~g~i~~Lv~lL~~~-------~~~v~~~aa~aL~~La 268 (594)
+..-+++|+..+ .+-+-.+...+.++....+ .++.|.++=|.+.|-++|+++ ....+.-+..+|+.+|
T Consensus 7 l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 7 LEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 455678898887 7777778888888876333 255688888899999999883 3557888889999999
Q ss_pred hcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccc
Q 040681 269 EHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRK 348 (594)
Q Consensus 269 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~ 348 (594)
. +|+....-.-.+-||.|++.+...+.
T Consensus 86 ~-~~~~a~~~~~~~~IP~Lle~l~~~s~---------------------------------------------------- 112 (543)
T PF05536_consen 86 R-DPELASSPQMVSRIPLLLEILSSSSD---------------------------------------------------- 112 (543)
T ss_pred C-ChhhhcCHHHHHHHHHHHHHHHcCCc----------------------------------------------------
Confidence 8 55543221112379999999877631
Q ss_pred ccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 349 DRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 349 ~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
..+...|..+|..++ .+++-++.+.+.|+++.|...+.+ .+.....|...+.+++.......
T Consensus 113 ----------~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~------ 174 (543)
T PF05536_consen 113 ----------LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKS------ 174 (543)
T ss_pred ----------hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhh------
Confidence 023456788999997 577779999999999999999987 45566778888888874432110
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
..........++..+-+...... ...+...+..|.++-...
T Consensus 175 ~~~~~~~l~~il~~La~~fs~~~-~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 175 WAEDSQLLHSILPSLARDFSSFH-GEDKFELLEFLSAFLPRS 215 (543)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhcCcC
Confidence 00011112234445544444332 444556677777666544
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.15 Score=50.19 Aligned_cols=232 Identities=18% Similarity=0.231 Sum_probs=135.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcc
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEK 321 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~ 321 (594)
+..+.+...+++...+...+..|..+.. ..+++.|+..|...+..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~------------------------ 82 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQE------------------------ 82 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccc------------------------
Confidence 4555555556666667777777776643 33788898888665311
Q ss_pred cccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCH
Q 040681 322 NSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG 401 (594)
Q Consensus 322 ~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~ 401 (594)
..++-.|+.||.++. .++ .++.+-++.+++..
T Consensus 83 -------------------------------------pmvRhEAaealga~~--~~~---------~~~~l~k~~~dp~~ 114 (289)
T KOG0567|consen 83 -------------------------------------PMVRHEAAEALGAIG--DPE---------SLEILTKYIKDPCK 114 (289)
T ss_pred -------------------------------------hHHHHHHHHHHHhhc--chh---------hHHHHHHHhcCCcc
Confidence 123566888888873 444 46777777766667
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChh---hHHHHHHHHHHHhcCCChhhH-HHHHHHHHHhhcCChhhhhcc
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPA---AKAVVDQLLRVINDLDSPTLQ-IPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~---~~~~v~~Ll~lL~s~~~~~v~-~~a~~aL~~La~~~~~~~~~~ 477 (594)
++++-+..+|..+............+.+....|+ ...-|..|-..|...+.+... ..|.-.|+|+- -...
T Consensus 115 ~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g------~Eea 188 (289)
T KOG0567|consen 115 EVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG------TEEA 188 (289)
T ss_pred ccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC------cHHH
Confidence 7887778888777533221110001011112222 222345555444444323332 34445555543 1245
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--ch-HhHhHH----HHHHHHHH
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--DR-TQLHGL----ALEQARVL 550 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~-vq~~Al----~l~~~~~l 550 (594)
|..|+.=|..++.-.|.+++..++.+-+ .-+|+.|.+.|... .+ |+.+|. .++....+
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~s---------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~ 253 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQS---------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCV 253 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhccc---------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHH
Confidence 7778888887888888899998888855 23678888877733 33 565554 44556667
Q ss_pred HHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 551 TALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 551 ~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
.+|....... ++.++.-..-|+..++.
T Consensus 254 ~vL~e~~~D~---~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 254 EVLKEYLGDE---ERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHcCCc---HHHHHHHHHHHHHHHHH
Confidence 7776333322 45666666667776654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.048 Score=62.52 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=99.3
Q ss_pred HHHHHHHHHhhCChh-H---HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh
Q 040681 217 SAAATALYNIANDQE-R---VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292 (594)
Q Consensus 217 e~A~~aL~~La~~~~-~---~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~ 292 (594)
..-.+||..|++.-+ . ...-..-|..|..+++|.+...+++---+-+-.++-..|+.||..+.+.+|-..++..|.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 334567777776433 3 334447899999999999999999988888878887778899999999988888888775
Q ss_pred cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHh
Q 040681 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWML 372 (594)
Q Consensus 293 ~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L 372 (594)
.+. . + + .+-+.+|+.+|..+
T Consensus 565 ~~~--~----~--------------------------------------------------~----~EqrtmaAFVLAvi 584 (1387)
T KOG1517|consen 565 PSQ--A----I--------------------------------------------------P----PEQRTMAAFVLAVI 584 (1387)
T ss_pred CcC--C----C--------------------------------------------------C----HHHHHHHHHHHHHH
Confidence 531 0 0 0 13478899999999
Q ss_pred ccCChhhHHHHHhhCcHHHHHHHhhhC-CHHHHHHHHHHHHHH
Q 040681 373 ARGSVANSRRISETKGLLCLAKLVEKE-QGELQFNCLMTIMEI 414 (594)
Q Consensus 373 ~~~~~~~~~~i~e~g~l~~L~~LL~~~-~~~v~~~A~~aL~nL 414 (594)
+.+..--++...+.+.+......|.++ .+-++.-+|-+|..|
T Consensus 585 v~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 585 VRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 887776677777777777666777664 355555566666544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.082 Score=58.61 Aligned_cols=251 Identities=20% Similarity=0.172 Sum_probs=145.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccC--chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hhHHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDN--DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND---QERVR 234 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~--~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~~~~ 234 (594)
..+-+|++.++.+|.+|+..+..++.-= -.--+.+...|.| |...|.... +++.-..+.||..+... ..-..
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeey-pEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEY-PEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCccc-HHHHHHHHHHHHHHHHhccccccCC
Confidence 3556889999999999999988876420 0001223333433 566777766 88776555555554431 11111
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH---hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL---AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT 311 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~ 311 (594)
- -.+.+|.|.-+|++...+|++++...+..+|.+.++ .|+-++- ---|+++|...
T Consensus 880 P--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLkah----------------- 937 (1172)
T KOG0213|consen 880 P--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKAH----------------- 937 (1172)
T ss_pred C--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHH-----------------
Confidence 1 146789999999999999999999999999998765 2333321 22355555443
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
|..++++|...++.++.. |-=..++..
T Consensus 938 ----------------------------------------------kK~iRRaa~nTfG~Iaka-------IGPqdVLat 964 (1172)
T KOG0213|consen 938 ----------------------------------------------KKEIRRAAVNTFGYIAKA-------IGPQDVLAT 964 (1172)
T ss_pred ----------------------------------------------HHHHHHHHHhhhhHHHHh-------cCHHHHHHH
Confidence 124566777777776531 111123444
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|+.=|+..+...+....-+| +-+++.+ . -|- |++.|+.=.+... ..||--.+++|..+-....
T Consensus 965 LlnnLkvqeRq~RvcTtvaI---aIVaE~c----~-pFt--------VLPalmneYrtPe-~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 965 LLNNLKVQERQNRVCTTVAI---AIVAETC----G-PFT--------VLPALMNEYRTPE-ANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred HHhcchHHHHHhchhhhhhh---hhhhhhc----C-chh--------hhHHHHhhccCch-hHHHHhHHHHHHHHHHHHH
Confidence 44444443333333333333 2222222 1 122 6666664433222 5677667777766653222
Q ss_pred hhhh----ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 472 ARET----RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 472 ~~~~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.... -+.|.|-..|-+.+.--+.-|+.++..++-
T Consensus 1028 emskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1028 EMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1111 334666667888888888899999999876
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.5 Score=51.00 Aligned_cols=332 Identities=14% Similarity=0.108 Sum_probs=176.7
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHH
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIV 246 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv 246 (594)
.+++..+.-|+..+.-+. .|......++..|.+..|+.+|.+. |..++.+..+|+.|+.+++..+.-.+.|++..+.
T Consensus 1783 ~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil 1859 (2235)
T KOG1789|consen 1783 RKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALEHGGLMYIL 1859 (2235)
T ss_pred cCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhh
Confidence 466677777777665554 4577888899999999999999764 7889999999999999999877777889988888
Q ss_pred HhhcC-CCHHHHHHHHHHHHHHhhcC---HH------------hHHHHHHcCChhhHHHhhhcCCcCCCcc-CccchhhH
Q 040681 247 NVLSD-SIMKVQIQVASLVARMAEHD---AL------------AQDDFARENVIRPLVTLLSFETFVDDPR-ANSGKQSI 309 (594)
Q Consensus 247 ~lL~~-~~~~v~~~aa~aL~~La~~~---~~------------~~~~i~~~g~i~~Lv~lL~~~~~~~~~~-~v~~~~si 309 (594)
.++-. .++.+|..++..+++|.... |. ..+.+++ +-+..|..+...+...+-. +......+
T Consensus 1860 ~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD--~PEAaVH~fE~T~EnPELiWn~~~r~kv 1937 (2235)
T KOG1789|consen 1860 SILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRD--SPEAAVHMFESTSENPELIWNEVTRQKV 1937 (2235)
T ss_pred HHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhc--CHHHHHHHHhccCCCcccccCHhHHHHH
Confidence 77754 48889999999999997532 11 1122222 2244555554332111000 00000000
Q ss_pred HHHHHHhhhhcccccc--cCCC-cccccchhccccCCCccccccccCC-hHHHH-HHHHHHHHHHHHhccCChhhHHHHH
Q 040681 310 HTIVQINKEMEKNSFV--GSKN-YRPYLYSEYCSSRSGQNRKDRENEK-PEVKI-KLKIACAEALWMLARGSVANSRRIS 384 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~--~~g~-~~~L~~~~~~~s~~~~~~~~~~~~d-p~~k~-~l~~~a~~aL~~L~~~~~~~~~~i~ 384 (594)
...+.. +..+.+. +.|. +..=++ .-+. | ..|.++ +.+.. .++.-...-=|+| .+| +. .
T Consensus 1938 S~~i~t---M~~~~y~~QQk~p~~~W~~P---EqsA-g----~~Ea~~E~aVGG~~~R~Fi~~P~f~L--R~P--k~--F 2000 (2235)
T KOG1789|consen 1938 SGIIDT---MVGKLYEQQQKDPTVKWNTP---EQSA-G----TSEADKECAVGGSINREFVVGPGFNL--RHP--KL--F 2000 (2235)
T ss_pred HHHHHH---HHHHHHHHhccCCcccccCc---hhhc-c----hhhhccCcccchhhhHHHhhCCCCcc--cCH--HH--H
Confidence 000000 0001111 0010 000000 0000 0 011111 00000 0000000000111 111 11 1
Q ss_pred hhCcHHHHHHHhhhCCHHH--HHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHH
Q 040681 385 ETKGLLCLAKLVEKEQGEL--QFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKS 462 (594)
Q Consensus 385 e~g~l~~L~~LL~~~~~~v--~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~a 462 (594)
-.+.++.+..++...+++- ..--.+++..|. ..+|.+... ++.-| -++.++..+.-.+ ..+-..|+++
T Consensus 2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~---r~hP~LADq--ip~LG----ylPK~~~Am~~~n-~s~P~SaiRV 2070 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELV---RHHPNLADQ--LPSLG----YLPKFCTAMCLQN-TSAPRSAIRV 2070 (2235)
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHH---HhCcchhhh--CCCcc----chHHHHHHHHhcC-CcCcHHHHHH
Confidence 2356778888887655421 111222333232 455655552 33333 5666666665444 4444789999
Q ss_pred HHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 463 IGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 463 L~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
|..|+.+.--. +...+.+++..|...- +.-.-|+.+|..+.. .+ ..+-....+..|-||.|++||.+.
T Consensus 2071 lH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~-r~--~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2071 LHELSENQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMK-RN--TGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHhhccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHH-Hh--HHHHHHHHhccCcHHHHHHHhccc
Confidence 99998654211 1245667777775433 334478888888865 22 134445567889999999999854
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.046 Score=53.69 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred hcCCHHHHHHHHHHHHHhhccC--chhHHHHHhc--CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHHHHhcC
Q 040681 166 QMGQLSDRIEAAIELASLAKDN--DRNKKIIVEE--GGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRVIVSEL 240 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~--~~~~~~i~~~--g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~iv~~g 240 (594)
...+=+.|.+|+..|+.+..++ ......+.+. ..+..+...+.+.. ..+...|+.++..|+..-. .-... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 4567778899999999999886 3333443321 55677777887777 7888999999999986322 22222 234
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 241 GVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 241 ~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.+|+|++.+.++...+++.|..+|..++.+.
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 6899999999999999999999999998854
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.18 Score=57.44 Aligned_cols=268 Identities=13% Similarity=0.153 Sum_probs=143.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-Chh-HHHHHH
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQE-RVRVIV 237 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~-~~~~iv 237 (594)
.+++.+.+.|.+.|.-|..-|..-..++..+-+.=-+...+..|+++|.+.+ +++|..|+.+|+-|+. -++ ..+.++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~~v 87 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLETIV 87 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4566777777777877776665433221111111112356788999999988 9999999999999985 222 233332
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
+ .|+.-+-++....+.-+.-.|.-.-.+ .| .-..+....+.+.+...|.......
T Consensus 88 e-----~L~~~~~s~keq~rdissi~Lktvi~nl~P-~~~~~la~tV~~~~t~~l~~~i~~q------------------ 143 (1233)
T KOG1824|consen 88 E-----NLCSNMLSGKEQLRDISSIGLKTVIANLPP-SSSSFLAATVCKRITPKLKQAISKQ------------------ 143 (1233)
T ss_pred H-----HHhhhhccchhhhccHHHHHHHHHHhcCCC-ccccccccHHHHHHHHHHHHHhhhc------------------
Confidence 2 233332233333333333222222111 11 0011111222333333332221000
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
.++..++.+.....+..+.++..--++ ...+.+.+++--+
T Consensus 144 -----------------------------------e~~sai~~e~lDil~d~lsr~g~ll~~-----fh~~il~~l~~ql 183 (1233)
T KOG1824|consen 144 -----------------------------------EDVSAIKCEVLDILADVLSRFGTLLPN-----FHLSILKCLLPQL 183 (1233)
T ss_pred -----------------------------------ccchhhHHHHHHHHHHHHHhhcccCcc-----hHHHHHHHHhhcc
Confidence 011111222223333444444221122 2344566666667
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE-- 474 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-- 474 (594)
.+...-++..|+.+|..++....+ . +| ..+++.|++=|.....+....--+.+|+.+++....+-
T Consensus 184 ~s~R~aVrKkai~~l~~la~~~~~-----~-ly-------~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~ 250 (1233)
T KOG1824|consen 184 QSPRLAVRKKAITALGHLASSCNR-----D-LY-------VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS 250 (1233)
T ss_pred cChHHHHHHHHHHHHHHHHHhcCH-----H-HH-------HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc
Confidence 777788999999999988744321 1 22 34788888877766555555667778888886443221
Q ss_pred --hccHHHHHHhc---cCCCHHHHHHHHHHHHHhcC
Q 040681 475 --TRVIGPLVAHL---SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 --~~~i~~Lv~lL---~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++|.+.... ...+.+.++....++.-|..
T Consensus 251 h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 251 HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 15677777777 67778888888888777754
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.13 Score=57.14 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=98.1
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.+.+|.|.-+|++....+++|+...+.-|+.........|. . ..+-=.|+.+|+++. ..++..|..++|.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE-W--------MRIcfeLlelLkahk-K~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE-W--------MRICFELLELLKAHK-KEIRRAAVNTFGY 951 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH-H--------HHHHHHHHHHHHHHH-HHHHHHHHhhhhH
Confidence 45789999999999999999999999988844332222222 1 123345777888887 9999999999999
Q ss_pred hhcCChhhhhccHHHHHHhccCCCH-H----HHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhH
Q 040681 466 LARTFPARETRVIGPLVAHLSHRNQ-E----VATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQL 539 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~~~~~-~----v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~ 539 (594)
++. ..|--..|..||++-.. + |....+.++-.=.| +- ...+|.|+.=-+..+. ||.
T Consensus 952 Iak-----aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c-~p------------FtVLPalmneYrtPe~nVQn 1013 (1172)
T KOG0213|consen 952 IAK-----AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-GP------------FTVLPALMNEYRTPEANVQN 1013 (1172)
T ss_pred HHH-----hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhc-Cc------------hhhhHHHHhhccCchhHHHH
Confidence 994 33444455555543222 2 22222222211111 11 2356666665555555 665
Q ss_pred hHH-----------HHHHH---HHHHHHhhhccccccccchHHHHHHHHHHhccccccc
Q 040681 540 HGL-----------ALEQA---RVLTALEGADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 540 ~Al-----------~l~~~---~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
--| +.+.. .+...|| ...+-.|+.-|.+-..++.++-|--.|
T Consensus 1014 GVLkalsf~FeyigemskdYiyav~Plle---DAlmDrD~vhRqta~~~I~Hl~Lg~~g 1069 (1172)
T KOG0213|consen 1014 GVLKALSFMFEYIGEMSKDYIYAVTPLLE---DALMDRDLVHRQTAMNVIKHLALGVPG 1069 (1172)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhHHHH---HhhccccHHHHHHHHHHHHHHhcCCCC
Confidence 433 11111 1223334 122334777788888888888664334
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.47 Score=50.43 Aligned_cols=131 Identities=8% Similarity=0.118 Sum_probs=90.9
Q ss_pred HHHHHh-cCCHHHHHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh-cCCcCCCccCccchh
Q 040681 233 VRVIVS-ELGVPTIVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS-FETFVDDPRANSGKQ 307 (594)
Q Consensus 233 ~~~iv~-~g~i~~Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~v~~~~ 307 (594)
-+.+++ ...+..|..++++. .+.+-..|+.++..+-.++|.+-..+.+.|.++.+++.+. .+....
T Consensus 98 lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s--------- 168 (379)
T PF06025_consen 98 LRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPS--------- 168 (379)
T ss_pred cccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCc---------
Confidence 344555 44566677777765 6789999999999999999999999999999999999887 442110
Q ss_pred hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 308 si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
.++....-.+|..||- |..-.+.+.+.+
T Consensus 169 ---------------------------------------------------~e~l~~lP~~l~AicL-N~~Gl~~~~~~~ 196 (379)
T PF06025_consen 169 ---------------------------------------------------SEVLTSLPNVLSAICL-NNRGLEKVKSSN 196 (379)
T ss_pred ---------------------------------------------------HHHHHHHHHHHhHHhc-CHHHHHHHHhcC
Confidence 1223344567778874 677788899999
Q ss_pred cHHHHHHHhhhCCH--HHHH-HHHHH----HHHHHHHhcCCHHHHHH
Q 040681 388 GLLCLAKLVEKEQG--ELQF-NCLMT----IMEITAAAESNADLRRA 427 (594)
Q Consensus 388 ~l~~L~~LL~~~~~--~v~~-~A~~a----L~nL~~~~~~~~~~r~~ 427 (594)
.++.+++++.+.+- .++. ..+.. +-+|. .+++.+|..
T Consensus 197 ~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~---RH~p~Lk~~ 240 (379)
T PF06025_consen 197 PLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM---RHHPSLKPD 240 (379)
T ss_pred hHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH---ccCHHHHHH
Confidence 99999999976542 1211 22333 33333 677777763
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1.7 Score=44.28 Aligned_cols=293 Identities=15% Similarity=0.090 Sum_probs=175.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHH--HHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHh
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPL--LKLLKETASSEAQSAAATALYNIAN-DQERVRVIVS 238 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~L--v~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~ 238 (594)
+..+-.+|.++-..|..+|..++.. +..-..|.+.....++ ..+--..+ .-++......+-.+.. ++++-...-.
T Consensus 134 ldcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckk 211 (524)
T KOG4413|consen 134 LDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKK 211 (524)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhh
Confidence 4455567888888889999999987 5555666666655544 33322223 4555556666666655 7777777778
Q ss_pred cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 239 ELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 239 ~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.|.+..|..=|+. .+.-|+.++......|+.. ...++.+.+.|.|..+..++...+....+ .++.+
T Consensus 212 SGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfe-------kfral----- 278 (524)
T KOG4413|consen 212 SGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFE-------KFRAL----- 278 (524)
T ss_pred hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHH-------HHHHH-----
Confidence 8888888777765 4777899999999999874 36788888888888888877543210000 01111
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc---CChhhHHHHHhhCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR---GSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~---~~~~~~~~i~e~g~l~~L~~ 394 (594)
|. -.+-+.+.+. ....+|+...- ++..-..
T Consensus 279 ----------------mg-----------------------------fgkffgkeaimdvseeaicealii--aidgsfE 311 (524)
T KOG4413|consen 279 ----------------MG-----------------------------FGKFFGKEAIMDVSEEAICEALII--AIDGSFE 311 (524)
T ss_pred ----------------HH-----------------------------HHHHhcchHHhhcCHHHHHHHHHH--HHHhhHH
Confidence 00 0111111111 11233333221 3555566
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC---h
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF---P 471 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~---~ 471 (594)
+++..+++.+..|..++..+.+-.++.. + ..++..|+.+ ..+.+....+ ...-++.++.+|.+++.-. +
T Consensus 312 miEmnDpdaieaAiDalGilGSnteGad-l---llkTgppaae---hllarafdqn-ahakqeaaihaLaaIagelrlkp 383 (524)
T KOG4413|consen 312 MIEMNDPDAIEAAIDALGILGSNTEGAD-L---LLKTGPPAAE---HLLARAFDQN-AHAKQEAAIHALAAIAGELRLKP 383 (524)
T ss_pred hhhcCCchHHHHHHHHHHhccCCcchhH-H---HhccCChHHH---HHHHHHhccc-ccchHHHHHHHHHHhhccccCCh
Confidence 7788899999999999988764444332 1 1122223322 2334443322 2667888899999988522 1
Q ss_pred hhhh----------------------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHH-HcCChHHHH
Q 040681 472 ARET----------------------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII-EFNAVPPLM 528 (594)
Q Consensus 472 ~~~~----------------------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~-~~g~i~~Lv 528 (594)
...+ .-...+...+....+++.-.|...+..++. . +=..+.|. ..|.|...+
T Consensus 384 eqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa-q----PWalkeifakeefieiVt 458 (524)
T KOG4413|consen 384 EQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA-Q----PWALKEIFAKEEFIEIVT 458 (524)
T ss_pred hhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc-C----cHHHHHHhcCccceeeec
Confidence 1111 113445556677899999999999988876 2 33445554 444444443
Q ss_pred H
Q 040681 529 R 529 (594)
Q Consensus 529 ~ 529 (594)
+
T Consensus 459 D 459 (524)
T KOG4413|consen 459 D 459 (524)
T ss_pred c
Confidence 3
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.17 Score=57.70 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=52.4
Q ss_pred HHHHHH-HHHhcCCChhhHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 439 VVDQLL-RVINDLDSPTLQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 439 ~v~~Ll-~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.+..|+ .+.....++.++.-|.-.||.+-+..+.. +.+.-..+++.+++.+.+|+.+|+.||++++. ||
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v-gn 888 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV-GN 888 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc-Cc
Confidence 444444 34444455888999999999998755433 33566788899999999999999999999988 55
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.037 Score=59.23 Aligned_cols=119 Identities=8% Similarity=-0.002 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCC
Q 040681 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSI 253 (594)
Q Consensus 175 ~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~ 253 (594)
.++..|.++++.-...|.-+.+...+.+|+++|+.++ ..+.--+..+++|+.. ...-+..+.+.|.|..|+.++.+.+
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 3445566776654556667778889999999999877 6677778889999876 5556888889999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcCH-HhHHHHHHcCChhhHHHhhhcC
Q 040681 254 MKVQIQVASLVARMAEHDA-LAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 254 ~~v~~~aa~aL~~La~~~~-~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
..+|.+..|.++.+.-+.. ..+-.+....++..++++++++
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp 528 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP 528 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc
Confidence 8999999999999876543 2344555667889999988665
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.95 Score=47.98 Aligned_cols=126 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCChhHHHHHHhcCCH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIANDQERVRVIVSELGV 242 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i 242 (594)
.+-+++.++|..|.+.++.+..+ +..-+.+.+.+.=-.++.-|... ++..-+++|...++.+..-+..... +..|.+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHH
Confidence 44455688998899999988877 67777777777555555555443 3366788999988887764333222 256778
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 243 PTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 243 ~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
..+|.+.++.+...+..|..+|..++-.+| +.+..+||++.|+..+.++
T Consensus 111 ralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 111 RALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhc
Confidence 899999999999999999999999998776 6778899999999998765
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.16 Score=55.42 Aligned_cols=254 Identities=17% Similarity=0.132 Sum_probs=146.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hh
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKD--NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND---QE 231 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~--~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~ 231 (594)
.|-..+..|++..+.+|.+|+....+++.- +-.-.+.+...|.| |..-|.... +++.-....|++.+... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDY-PEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence 355567789999999999999888877642 00111333334433 455566656 88876666666666541 11
Q ss_pred HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH---hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL---AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 232 ~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
-..- -.|.+|.|.-+|++...+++.+....+..+|.+.|+ .|+-++- ---|++.|.+.
T Consensus 682 mqpP--i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~-------------- 742 (975)
T COG5181 682 MQPP--ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSW-------------- 742 (975)
T ss_pred cCCc--hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHh--------------
Confidence 1112 257899999999999999999999999999998775 2222221 12344444333
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCc
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKG 388 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~ 388 (594)
+.+++++|...++.++.. |--..+
T Consensus 743 -------------------------------------------------nKeiRR~A~~tfG~Is~a-------iGPqdv 766 (975)
T COG5181 743 -------------------------------------------------NKEIRRNATETFGCISRA-------IGPQDV 766 (975)
T ss_pred -------------------------------------------------hHHHHHhhhhhhhhHHhh-------cCHHHH
Confidence 124567777777766431 111124
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
+..|+.=|+..+...+....-+|.- +++.+ . -|- +++.|+.=..... ..||--.++++..+-.
T Consensus 767 L~~LlnnLkvqeRq~RvctsvaI~i---Vae~c----g-pfs--------VlP~lm~dY~TPe-~nVQnGvLkam~fmFe 829 (975)
T COG5181 767 LDILLNNLKVQERQQRVCTSVAISI---VAEYC----G-PFS--------VLPTLMSDYETPE-ANVQNGVLKAMCFMFE 829 (975)
T ss_pred HHHHHhcchHHHHHhhhhhhhhhhh---hHhhc----C-chh--------hHHHHHhcccCch-hHHHHhHHHHHHHHHH
Confidence 4555554544444444433333322 22211 1 121 6666664333222 5566666666655543
Q ss_pred CChhhhh---c-cHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 469 TFPARET---R-VIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 469 ~~~~~~~---~-~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
....... . +.|.|-..|.+.++--+.-|+..+..++-
T Consensus 830 yig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 830 YIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 2211111 2 33555567888888888889999998865
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.4 Score=45.16 Aligned_cols=289 Identities=13% Similarity=0.132 Sum_probs=160.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc----cCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK----ETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~----~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
.|.+..+.....|+..+..++.-. +-.+.-|-|+.-+. ++....++.+++.++++.+...+....+-..
T Consensus 102 aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s 174 (858)
T COG5215 102 ALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS 174 (858)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh
Confidence 445555566666777777666532 12355666655443 3344678889999999998743332222222
Q ss_pred CC--HHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 240 LG--VPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 240 g~--i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
+. +......++.+ +..+|-.+..+|.+-+. ..|..|...+-...+++..-.-+
T Consensus 175 N~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~mqvvceat--------------------- 230 (858)
T COG5215 175 NVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYFMQVVCEAT--------------------- 230 (858)
T ss_pred hHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchhheeeehhc---------------------
Confidence 22 23333345555 67788888888887433 34444443333333332211111
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..+| .+++..+..+|..+-.-.-...+...|.-......+.+
T Consensus 231 ----------------------------------q~~d----~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m 272 (858)
T COG5215 231 ----------------------------------QGND----EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM 272 (858)
T ss_pred ----------------------------------cCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112 23455666666665433333344444444445555667
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHH--HHHHhhhcCChh---------hHHHHHHHHHHHhcC------CChhhHHHH
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNAD--LRRAAFKTNSPA---------AKAVVDQLLRVINDL------DSPTLQIPA 459 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~--~r~~~~~~~~~~---------~~~~v~~Ll~lL~s~------~~~~v~~~a 459 (594)
.+.++++...|...=+-+| +...+ +-. ...+..|+ +..+++.|+++|... |++.+-..|
T Consensus 273 ks~nd~va~qavEfWstic---eEeid~~~e~-~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA 348 (858)
T COG5215 273 KSQNDEVAIQAVEFWSTIC---EEEIDGEMED-KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAA 348 (858)
T ss_pred cCcchHHHHHHHHHHHHHH---HHHhhhHHHH-hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhH
Confidence 7788888776665544444 22111 111 11222222 456899999999872 346677777
Q ss_pred HHHHHHhhcCChhhhhccHHHHHHh----ccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 460 IKSIGSLARTFPARETRVIGPLVAH----LSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 460 ~~aL~~La~~~~~~~~~~i~~Lv~l----L~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
..+|--.+..- ...++.+.... +.+.++.-+..|+.|++..-.+.+ ......++ ..++|.+..+..
T Consensus 349 ~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~---~~~lT~~V-~qalp~i~n~m~ 418 (858)
T COG5215 349 SSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPC---EDCLTKIV-PQALPGIENEMS 418 (858)
T ss_pred HHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCcc---HHHHHhhH-HhhhHHHHHhcc
Confidence 77776666321 12344554444 478899999999999999866333 44444444 346777777665
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=55.16 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=94.3
Q ss_pred HHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHH
Q 040681 365 CAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLL 444 (594)
Q Consensus 365 a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll 444 (594)
+..+++|+.......+..+.+.|.+..|++++.+.+..+|.++.|.+..+.-....+..++ |. ++-+++.++
T Consensus 451 ~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~---~L-----akig~~kvl 522 (743)
T COG5369 451 DTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK---FL-----AKIGVEKVL 522 (743)
T ss_pred chhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh---hH-----HhcCHHHHH
Confidence 3556677655555667788999999999999999899999999999998864444443221 22 344788889
Q ss_pred HHHhcCCChhhHHHHHHHHHHhhcCChhhhh------------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 445 RVINDLDSPTLQIPAIKSIGSLARTFPARET------------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 445 ~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~------------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+.+... ..+++.+...|+|+.-+....+. -....|+..+...++--..+.+..|-+++.
T Consensus 523 ~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa 594 (743)
T COG5369 523 SYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAA 594 (743)
T ss_pred HHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHh
Confidence 8887555 89999999999999863332211 235667777777777666666777777655
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.2 Score=45.14 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=86.9
Q ss_pred HHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hh-------HHHHHHhcCCHHHH
Q 040681 176 AAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND---QE-------RVRVIVSELGVPTI 245 (594)
Q Consensus 176 Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~-------~~~~iv~~g~i~~L 245 (594)
....+..++.. |..--.+++.++|+.|+.||.+.+ .++-...+..|..|... .+ -...+++.++++.|
T Consensus 104 ~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATM-PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 44556666766 777788999999999999999988 89998889999888752 12 14678889999999
Q ss_pred HHhhcCCCHH------HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 246 VNVLSDSIMK------VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 246 v~lL~~~~~~------v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
++-++.-+.. -..++...+-||....+.....+++.|.+..|+.-+
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl 233 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRL 233 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHH
Confidence 9988654333 445667778888888777777878877777766644
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.54 E-value=5.4 Score=44.71 Aligned_cols=327 Identities=15% Similarity=0.143 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.-.+-+.+|++.-...|.-.-..+.-+...|.+.-+.+ +..+.+=|.+.+ +.-+..|+.+++|+..- +.++.+
T Consensus 75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn-~~fv~LAL~~I~niG~r-e~~ea~ 147 (938)
T KOG1077|consen 75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRN-PTFVCLALHCIANIGSR-EMAEAF 147 (938)
T ss_pred chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCC-cHHHHHHHHHHHhhccH-hHHHHh
Confidence 33455666766665566555555554554443333333 233444455556 78888899999998762 344444
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccc-hh-hHHHH
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSG-KQ-SIHTI 312 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~-~~-si~~l 312 (594)
.. -|| ++|.++ ..-|+..+|-+|..|-..+|+ .+.-.+-...++.+|.+.. -. |.. .. -|..+
T Consensus 148 ~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~----~g-v~ta~~sLi~~l 214 (938)
T KOG1077|consen 148 AD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQH----MG-VVTAATSLIEAL 214 (938)
T ss_pred hh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccc----cc-eeeehHHHHHHH
Confidence 22 233 777777 345899999999999876653 3322345778888886552 11 111 01 12222
Q ss_pred HHHhhhhcccccccCCCcccccchh-ccccCCCcccccc-ccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSE-YCSSRSGQNRKDR-ENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGL 389 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~-~~~s~~~~~~~~~-~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l 389 (594)
+..+...-. +.+++-+.-+ +.....|+...+. .+--|. .++....++.|.+.-... +..+.. .+
T Consensus 215 vk~~p~~yk------~~~~~avs~L~riv~~~~t~~qdYTyy~vP~--PWL~vKl~rlLq~~p~~~D~~~r~~-----l~ 281 (938)
T KOG1077|consen 215 VKKNPESYK------TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPA--PWLQVKLLRLLQIYPTPEDPSTRAR-----LN 281 (938)
T ss_pred HHcCCHHHh------hhHHHHHHHHHHHHhhcccchhhceeecCCC--hHHHHHHHHHHHhCCCCCCchHHHH-----HH
Confidence 211111100 0000000000 0000000000000 000011 245666677776653211 222322 23
Q ss_pred HHHHHHhhhCC-----HHHH-HHHHHHHH----HHH-HHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHH
Q 040681 390 LCLAKLVEKEQ-----GELQ-FNCLMTIM----EIT-AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIP 458 (594)
Q Consensus 390 ~~L~~LL~~~~-----~~v~-~~A~~aL~----nL~-~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~ 458 (594)
++|-.+|...+ .+++ .+|-.++. ++. -+.+... .....+.+|-.+|.+.. ..++--
T Consensus 282 evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~------------ll~~~~~~Lg~fls~rE-~NiRYL 348 (938)
T KOG1077|consen 282 EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE------------LLSRAVNQLGQFLSHRE-TNIRYL 348 (938)
T ss_pred HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH------------HHHHHHHHHHHHhhccc-ccchhh
Confidence 44444443222 1233 23333321 111 1111111 12236677777777555 888888
Q ss_pred HHHHHHHhhcCChhhhh--ccHHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 459 AIKSIGSLARTFPARET--RVIGPLVAHLS-HRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 459 a~~aL~~La~~~~~~~~--~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
|...+..|+......+. .-...++..|+ +++..+++.|+-.|..|+- +++.+.|++ -|++-|...|
T Consensus 349 aLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD------~~Nak~IV~-----elLqYL~tAd 417 (938)
T KOG1077|consen 349 ALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD------VSNAKQIVA-----ELLQYLETAD 417 (938)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc------hhhHHHHHH-----HHHHHHhhcc
Confidence 88888888876543322 23677888887 8999999999999999965 566776654 4677777676
Q ss_pred h-HhHh
Q 040681 536 R-TQLH 540 (594)
Q Consensus 536 ~-vq~~ 540 (594)
. +|.+
T Consensus 418 ~siree 423 (938)
T KOG1077|consen 418 YSIREE 423 (938)
T ss_pred hHHHHH
Confidence 6 5543
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.15 Score=57.17 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 154 MLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 154 i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
+.....+.+...++.|.+.|.-.--+|.+.+...+.. ..++|..+++=.++++ +.++..|.+.++.+-.+ ...
T Consensus 47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~-~i~ 119 (734)
T KOG1061|consen 47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD-KIT 119 (734)
T ss_pred hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh-HHH
Confidence 3345567788888899888888888899999886654 2356777777777777 89998888877766442 222
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
.. .+.++.+.+++.++.+|..++-.+.++-. ...+.+.+.|.+..|-+++.+.
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC
Confidence 22 46789999999999999999999999854 3457777888899999988744
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=4.1 Score=43.24 Aligned_cols=255 Identities=12% Similarity=0.111 Sum_probs=157.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-----cCc----hhHHHHHhcCChHHHHHhhccCC-----CHHHHHHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAK-----DND----RNKKIIVEEGGVPPLLKLLKETA-----SSEAQSAAATA 222 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-----~~~----~~~~~i~~~g~I~~Lv~LL~~~~-----~~~v~e~A~~a 222 (594)
.|..++.+|.+++.+.-...+.-|..+.. ++. ..-..+++.+.++.|++-+..-+ ......++...
T Consensus 126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v 205 (536)
T KOG2734|consen 126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV 205 (536)
T ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence 35567777777777776666666666543 222 23456677788999988765432 24556677888
Q ss_pred HHHhhC-ChhHHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCC
Q 040681 223 LYNIAN-DQERVRVIVSELGVPTIVNVLSD--SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDD 299 (594)
Q Consensus 223 L~~La~-~~~~~~~iv~~g~i~~Lv~lL~~--~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 299 (594)
+-|+.. +++....+++.|.+..|++-+.. +-..-+..|..+|+-+-+++.+++......+|+..|+.-+.--.- .+
T Consensus 206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~-~d 284 (536)
T KOG2734|consen 206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR-HD 284 (536)
T ss_pred HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc-cC
Confidence 889887 77788888888888877774432 234457788899999988877788888888888888776532100 00
Q ss_pred ccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhh
Q 040681 300 PRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVAN 379 (594)
Q Consensus 300 ~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~ 379 (594)
+ ...+. .++-++...+|+.+- -.+++
T Consensus 285 P-------------------------------------------------~~~~E----~EmmeNLFdcLCs~l-m~~~n 310 (536)
T KOG2734|consen 285 P-------------------------------------------------ATVDE----EEMMENLFDCLCSLL-MAPAN 310 (536)
T ss_pred C-------------------------------------------------CCcCH----HHHHHHHHHHHHHHh-cChhh
Confidence 0 00000 234455555666553 46788
Q ss_pred HHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh-----cCCChh
Q 040681 380 SRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN-----DLDSPT 454 (594)
Q Consensus 380 ~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~-----s~~~~~ 454 (594)
+..+....++....-+++. ..-.+..+..+|-.+..+.++.+.+-+ |+. .++.+.+.+..++.=. .....+
T Consensus 311 r~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~k--fVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e 386 (536)
T KOG2734|consen 311 RERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNK--FVE-ILGLRTIFPLFMKTPLKRKKRKISADE 386 (536)
T ss_pred hhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHH--HHH-HHhHHHHHHHHhhCccchhcccCcHHH
Confidence 9999888888755555543 555667788888888866665554433 342 2222333333331100 011145
Q ss_pred hHHHHHHHHHHhhcCC
Q 040681 455 LQIPAIKSIGSLARTF 470 (594)
Q Consensus 455 v~~~a~~aL~~La~~~ 470 (594)
.-+..+..|++|-++-
T Consensus 387 ~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 387 HEEHVCSILASLLRNL 402 (536)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5677777777776533
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.34 Score=55.17 Aligned_cols=147 Identities=17% Similarity=0.158 Sum_probs=104.4
Q ss_pred HHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHH
Q 040681 365 CAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLL 444 (594)
Q Consensus 365 a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll 444 (594)
.-+.|..+..|++ ... .++-+++.+.+.+.+++.-.--=|.+. ++.+|+... . .++.+.
T Consensus 40 mK~iIa~M~~G~d-mss------Lf~dViK~~~trd~ElKrL~ylYl~~y---ak~~P~~~l---L--------avNti~ 98 (757)
T COG5096 40 MKKIIAQMSLGED-MSS------LFPDVIKNVATRDVELKRLLYLYLERY---AKLKPELAL---L--------AVNTIQ 98 (757)
T ss_pred HHHHHHHHhcCCC-hHH------HHHHHHHHHHhcCHHHHHHHHHHHHHH---hccCHHHHH---H--------HHHHHH
Confidence 3456777877765 121 356666777778888887554445444 477774433 1 667777
Q ss_pred HHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCCh
Q 040681 445 RVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524 (594)
Q Consensus 445 ~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i 524 (594)
+=+.+.+ +.+|..|+++++.|-. +..-..+++++.++++++++.||+.|+.|+.++=. -....+.+.|.+
T Consensus 99 kDl~d~N-~~iR~~AlR~ls~l~~--~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-------ld~~l~~~~g~~ 168 (757)
T COG5096 99 KDLQDPN-EEIRGFALRTLSLLRV--KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-------LDKDLYHELGLI 168 (757)
T ss_pred hhccCCC-HHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-------cCHhhhhcccHH
Confidence 7766554 9999999999998852 22223678999999999999999999999999843 123345577888
Q ss_pred HHHHHhccCCch-HhHhHH
Q 040681 525 PPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 525 ~~Lv~lL~~~~~-vq~~Al 542 (594)
.++..++...++ |..+|+
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl 187 (757)
T COG5096 169 DILKELVADSDPIVIANAL 187 (757)
T ss_pred HHHHHHhhCCCchHHHHHH
Confidence 899999988888 666666
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.8 Score=43.88 Aligned_cols=232 Identities=17% Similarity=0.150 Sum_probs=141.3
Q ss_pred hhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC-CHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHc-
Q 040681 206 LLKETASSEAQSAAATALYNIANDQERVRVIVSEL-GVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARE- 281 (594)
Q Consensus 206 LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g-~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~- 281 (594)
+++.-+ +-.+.-|+.+|.++..+++.|..+-.++ .-..++.+++.. +..+|-+..-+++-|+- ++++.+.+-..
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 444445 6688889999999999999988877555 445678888776 67889999999999986 55666444331
Q ss_pred CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHH
Q 040681 282 NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKL 361 (594)
Q Consensus 282 g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l 361 (594)
..+.-|+.+.+.. +|.++
T Consensus 235 dli~dli~iVk~~--------------------------------------------------------------~keKV 252 (432)
T COG5231 235 DLINDLIAIVKER--------------------------------------------------------------AKEKV 252 (432)
T ss_pred HHHHHHHHHHHHH--------------------------------------------------------------HHHHH
Confidence 2345555554332 12345
Q ss_pred HHHHHHHHHHhccCC-hhhHHHH-HhhCcHHHHHHHhhhC--CHHHHHHH---HHHHHH----HHHHh-------c----
Q 040681 362 KIACAEALWMLARGS-VANSRRI-SETKGLLCLAKLVEKE--QGELQFNC---LMTIME----ITAAA-------E---- 419 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~-~~~~~~i-~e~g~l~~L~~LL~~~--~~~v~~~A---~~aL~n----L~~~~-------~---- 419 (594)
-+.++..+.|++... ...-..+ ...++.++.-.|++.+ ++++...- -..|-+ +|... .
T Consensus 253 ~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~ 332 (432)
T COG5231 253 LRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLE 332 (432)
T ss_pred HHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCccc
Confidence 566777777776422 1222223 3333444444444432 33333211 111110 11000 0
Q ss_pred -CCH--------HHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhc
Q 040681 420 -SNA--------DLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHL 485 (594)
Q Consensus 420 -~~~--------~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL 485 (594)
..+ +.-+ .+..+ --.++..|.+++++..+.....-|+.-|+.+.+..|.. ..|+=..+..++
T Consensus 333 wSp~H~~~dFWs~N~d-~l~kd---ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~ 408 (432)
T COG5231 333 WSPYHHKKDFWSTNLD-MLIKD---NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLI 408 (432)
T ss_pred CCCcccccCchhhhHH-HHhhh---hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHh
Confidence 000 0001 01111 13578899999998875556778888899998876643 348889999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC
Q 040681 486 SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 486 ~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+++++|+.+|..|+..+.+
T Consensus 409 nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 409 NHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred cCCCchhhHHHHHHHHHHHh
Confidence 99999999999999877644
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1 Score=46.62 Aligned_cols=109 Identities=25% Similarity=0.144 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC---hhH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE--EGGVPPLLKLLKETASSEAQSAAATALYNIAND---QER 232 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~--~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~---~~~ 232 (594)
+.+.|..+.......|..|+..|.++..... ....+.+ .-.+..+.+.++.++ .+-+..|+.+++.++-. .+.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCcc
Confidence 5567778877788999999999998886532 2233322 234777888888888 66677788888887753 234
Q ss_pred HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhh
Q 040681 233 VRVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAE 269 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~ 269 (594)
...+++ ...|+|.+++.++ ++.+|..++.+|+-++.
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 455554 4688999999877 56677777777776654
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.20 E-value=3.9 Score=46.35 Aligned_cols=265 Identities=20% Similarity=0.199 Sum_probs=162.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-hccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHh
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASL-AKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVS 238 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~l-a~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~ 238 (594)
+|..+|.+.....+.+|+.-|..+ +++.+ . ....|..|+...+.+ .+++...---|...|..+.+-.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA---- 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA---- 106 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce----
Confidence 577889998889999999877554 55532 1 234678888888887 8998877666666665322211
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHh-hhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 239 ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL-LSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.=-|..+=+-|+++++.+|..|.++|+.+=. ..|.|++-+ ++..
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRv------------p~IaPI~llAIk~~----------------------- 151 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRV------------PMIAPIMLLAIKKA----------------------- 151 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch------------hhHHHHHHHHHHHH-----------------------
Confidence 1247788888999999999888877766522 123333322 1111
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..||+ ..++..|+.||-.|-+-+++.... .+.++-.||.
T Consensus 152 ----------------------------------~~D~s--~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLa 190 (968)
T KOG1060|consen 152 ----------------------------------VTDPS--PYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLA 190 (968)
T ss_pred ----------------------------------hcCCc--HHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhc
Confidence 01111 256788899998887666664443 3567778888
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh---
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--- 474 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--- 474 (594)
+.++-|.-.|++|.-++| -++-++-.- =-..|.++|...+.+ -|...+..|..-||..=...
T Consensus 191 D~splVvgsAv~AF~evC---PerldLIHk-----------nyrklC~ll~dvdeW-gQvvlI~mL~RYAR~~l~~P~~~ 255 (968)
T KOG1060|consen 191 DRSPLVVGSAVMAFEEVC---PERLDLIHK-----------NYRKLCRLLPDVDEW-GQVVLINMLTRYARHQLPDPTVV 255 (968)
T ss_pred CCCCcchhHHHHHHHHhc---hhHHHHhhH-----------HHHHHHhhccchhhh-hHHHHHHHHHHHHHhcCCCcccc
Confidence 888888888888887776 333322221 122344444333322 24445555555554220000
Q ss_pred ---------------------h---------ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCCh
Q 040681 475 ---------------------T---------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524 (594)
Q Consensus 475 ---------------------~---------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i 524 (594)
+ -.+...-.+|.+.++.|...+|.+...++- .+.. ...+
T Consensus 256 ~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP------~~~~-----~~i~ 324 (968)
T KOG1060|consen 256 DSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP------KNQV-----TKIA 324 (968)
T ss_pred ccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC------HHHH-----HHHH
Confidence 0 012222235578899999999999999876 2222 2347
Q ss_pred HHHHHhccCCchHh
Q 040681 525 PPLMRLLRGNDRTQ 538 (594)
Q Consensus 525 ~~Lv~lL~~~~~vq 538 (594)
++|+++|+++..+|
T Consensus 325 kaLvrLLrs~~~vq 338 (968)
T KOG1060|consen 325 KALVRLLRSNREVQ 338 (968)
T ss_pred HHHHHHHhcCCcch
Confidence 89999999876543
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.068 Score=56.54 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhccCChhhH---HHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhh-hcC
Q 040681 358 KIKLKIACAEALWMLARGSVANS---RRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAF-KTN 432 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~---~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~-~~~ 432 (594)
+.+++.++.++|.|+..--..+. -..++.+.+..+..-. -.+.-.+|.|+|.++.||. .|+ +| ..+
T Consensus 497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf----kn~-----a~~lq~ 567 (728)
T KOG4535|consen 497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF----KNP-----ALPLQT 567 (728)
T ss_pred hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh----cCc-----cccccC
Confidence 35678889999998742111111 1112233333222221 2244579999999999997 454 34 455
Q ss_pred ChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 433 SPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 433 ~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+.+..+.+.|..++.++.+-.++..|+.+|.--.
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 66777889999999998888889999988886655
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.46 Score=53.10 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
+..-.+++...+..-++ +.+.+++.|++.+.+.++..-...+..+.+.- +..|.+|.. .++
T Consensus 376 RqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~i---ek~p~Lr~~-----------ii~ 436 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAI---EKFPNLRAS-----------IIE 436 (948)
T ss_pred HHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---HhCchHHHH-----------HHH
Confidence 44556777777766676 34456899999998877765444444444433 677777774 444
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcC
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLART 469 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~ 469 (594)
.|+.-+..-.+..+-..|++.+|.-|..
T Consensus 437 ~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 437 KLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred HHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 4544443333345556666666666643
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.7 Score=45.25 Aligned_cols=169 Identities=16% Similarity=0.186 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccCC--hhhHHHHHh--hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 362 KIACAEALWMLARGS--VANSRRISE--TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~--~~~~~~i~e--~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
+..+..-|..+..++ ......+.+ ...+..+...+.+....+...|+.++..|+...... |. +...
T Consensus 24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-------~~---~~~~ 93 (228)
T PF12348_consen 24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-------FE---PYAD 93 (228)
T ss_dssp HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-------GH---HHHH
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-------HH---HHHH
Confidence 455666677766555 222222221 134566666676666678888999998887443221 21 1245
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhcc-HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV-IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~-i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
.+++.|++.+.+.. ..++..|..+|..++...+ ....+ .+.+...+.++++.++..++..|..+....+.-......
T Consensus 94 ~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 68888998887665 7889999999999996543 12234 677777889999999999999998886521100011111
Q ss_pred HHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 517 AIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 517 ~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
...-...++.+.+++..+++ |+..|-
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar 198 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAAR 198 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 11112356778888888888 887765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.13 Score=43.37 Aligned_cols=90 Identities=24% Similarity=0.274 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH--hcCCHHHHHHhhc
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV--SELGVPTIVNVLS 250 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv--~~g~i~~Lv~lL~ 250 (594)
|.-++.+|...+..-....... -.-.+||++..+.+.+ ..++..|+.+|.|++..- +..+. -......|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQD-SRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 4455666666655433321111 1346899999999998 999999999999998632 22332 2346788889999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 040681 251 DSIMKVQIQVASLVARM 267 (594)
Q Consensus 251 ~~~~~v~~~aa~aL~~L 267 (594)
+.++.|+. +++.|-+|
T Consensus 79 D~d~~Vr~-~a~~Ld~l 94 (97)
T PF12755_consen 79 DPDENVRS-AAELLDRL 94 (97)
T ss_pred CCchhHHH-HHHHHHHH
Confidence 99999887 44666655
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.36 Score=48.05 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh-CChhHHHHHHhcCCHHHHHHhhc
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNVLS 250 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La-~~~~~~~~iv~~g~i~~Lv~lL~ 250 (594)
....|+..|..++--++..+..+.+..++..|+.+|.....+.++..+..+|..+- .++.+.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888888889999999999999999999965544889988888777654 57889999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHHhh
Q 040681 251 DS--IMKVQIQVASLVARMAE 269 (594)
Q Consensus 251 ~~--~~~v~~~aa~aL~~La~ 269 (594)
+. +.+++-++...|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 76 67787777777765543
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.58 E-value=9.1 Score=43.97 Aligned_cols=129 Identities=19% Similarity=0.145 Sum_probs=97.2
Q ss_pred CCcchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh
Q 040681 151 NDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 151 ~~~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~ 230 (594)
.+++..+..+.+....+.|.+.|+--=-+|...++.+|.- ++. ++..+.+=|++++ +.+|-.|.++++.+-. +
T Consensus 50 G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kDl~d~N-~~iR~~AlR~ls~l~~-~ 122 (757)
T COG5096 50 GEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKDLQDPN-EEIRGFALRTLSLLRV-K 122 (757)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhhccCCC-HHHHHHHHHHHHhcCh-H
Confidence 3445456667777777889999988888899998887632 221 4677788888898 9999999888887643 2
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 231 ERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 231 ~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+--. ..++++.+++.++++.||..|+-++.++-+.+ .+.+.+.|.+..+..++.+.
T Consensus 123 el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 123 ELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCC
Confidence 2222 35889999999999999999999999997655 35666677777777777554
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1.2 Score=48.96 Aligned_cols=86 Identities=13% Similarity=0.167 Sum_probs=60.4
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.|.+|.|.-+|++....++.|....+.-||..+......|. . ..+-=.|+..|++.+ .+++..|..++|+
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rE-W--------MRIcfeLvd~Lks~n-KeiRR~A~~tfG~ 756 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE-W--------MRICFELVDSLKSWN-KEIRRNATETFGC 756 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHH-H--------HHHHHHHHHHHHHhh-HHHHHhhhhhhhh
Confidence 56899999999999999999999999888855443333333 1 123334666777666 9999999999999
Q ss_pred hhcCChhhhhccHHHHHHhcc
Q 040681 466 LARTFPARETRVIGPLVAHLS 486 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~ 486 (594)
+++. .|--..|.-+|+
T Consensus 757 Is~a-----iGPqdvL~~Lln 772 (975)
T COG5181 757 ISRA-----IGPQDVLDILLN 772 (975)
T ss_pred HHhh-----cCHHHHHHHHHh
Confidence 9953 333344444553
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2.5 Score=46.09 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=125.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE-EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~-~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
|..+|...+.++|..+=.+|.+.... -++.-...+ ...++.|+.=+.+++ +.+|..|..-|..+..-+...-...-.
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s 290 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLS 290 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 56677778888886655544443221 001111112 245788888899998 999999988888776633322222245
Q ss_pred CCHHHHHHhhcCCCH-HHHHHHHH---HHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 240 LGVPTIVNVLSDSIM-KVQIQVAS---LVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~-~v~~~aa~---aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
|.+..+..++.+.++ .+++.+.. .|..+++ .+.....+.-...+..|...+.++.
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~-------------------- 349 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDR-------------------- 349 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcch--------------------
Confidence 666666667766533 34444333 3444443 2222222211112334444443321
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
.+.+..+..=+..|-. +..++-........+.|++-
T Consensus 350 -------------------------------------------~~tri~~L~Wi~~l~~-~~p~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 350 -------------------------------------------EETRIAVLNWIILLYH-KAPGQLLVHNDSIFLTLLKT 385 (675)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHh-hCcchhhhhccHHHHHHHHh
Confidence 0113333333333322 22223334455678999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
|.+.++++...++..+++||.-. +.+..++ ++..|+.+..... .-+...+.-.++.||.
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~-~~~~~~~------------fl~sLL~~f~e~~-~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSS-NSPNLRK------------FLLSLLEMFKEDT-KLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCc-ccccHHH------------HHHHHHHHHhhhh-HHHHhhhhHHHHHHHH
Confidence 99999999999999999998222 2222333 5666776665433 5555677777777774
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=94.34 E-value=1.6 Score=40.22 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=88.9
Q ss_pred HHHHhhCcHHHHHHHhhhCC------HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC-Ch
Q 040681 381 RRISETKGLLCLAKLVEKEQ------GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD-SP 453 (594)
Q Consensus 381 ~~i~e~g~l~~L~~LL~~~~------~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~-~~ 453 (594)
..++..+|+..|+++++++. +++...++.+..+|- ++...--. -....+|..+..++.... +.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLM---eHg~vsWd-------~l~~~FI~Kia~~Vn~~~~d~ 74 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELM---EHGIVSWD-------TLSDSFIKKIASYVNSSAMDA 74 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHH---hcCcCchh-------hccHHHHHHHHHHHccccccc
Confidence 45678899999999999877 355666777777765 43321111 013458888898888665 47
Q ss_pred hhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHH
Q 040681 454 TLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII 519 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~ 519 (594)
.+...|+..|-++..+.+..- .=-++.|+..|...+++++..|...+..+-...+ .+.++.+.
T Consensus 75 ~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~---~~~r~~i~ 142 (160)
T PF11841_consen 75 SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD---DSKRKEIA 142 (160)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC---hHHHHHHH
Confidence 889999999999998766421 1247999999999999999999887777655222 34444443
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.1 Score=43.34 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cC--CCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ET--ASSEAQSAAATALYNIANDQERVRVIVSELGVPTI 245 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~--~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~L 245 (594)
.+..-..|+..+..+..++|..-..+.+.|.++.+++-+. .+ .+.++....-.+|+.||.+.+..+.+.+.+.++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 4567788899999999998999899999999999999887 33 23788888888999999999999999999999999
Q ss_pred HHhhcCCC-------HHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 246 VNVLSDSI-------MKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 246 v~lL~~~~-------~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
.+++.+++ .+.-...-..+-.|..|+|.-|..+.+
T Consensus 202 f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 202 FEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99998751 134445556778888999988887765
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.3 Score=44.72 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=62.7
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH
Q 040681 201 PPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280 (594)
Q Consensus 201 ~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~ 280 (594)
.-|+.+|.+.+ |.++..|+.-|..++..+.....--+.-.++.+.++++...+ -+.|+.+|.|++.. +..+..+.+
T Consensus 6 ~elv~ll~~~s-P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLS-PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCC-hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 35788999998 999999998888887652211111134468888999987766 67799999999984 456666655
Q ss_pred cCChhhHHHhhhcC
Q 040681 281 ENVIRPLVTLLSFE 294 (594)
Q Consensus 281 ~g~i~~Lv~lL~~~ 294 (594)
. .+..+++.+-++
T Consensus 82 ~-~~k~l~~~~~~p 94 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDP 94 (353)
T ss_pred H-HHHHHHHHhcCc
Confidence 4 566666665444
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.27 E-value=1 Score=50.81 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=50.7
Q ss_pred CChHHHHHhh----ccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 198 GGVPPLLKLL----KETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 198 g~I~~Lv~LL----~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
.+..++..+| ++.. ..+..+|+.++.++..-.. +.+ ..++..|--++.++...+|-.|.++|..+++.+|
T Consensus 241 ~~~s~~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~--r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHKS-EMVIYEAARAIVSLPNTNS--REL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred cchhhHHHHHHHHHhchh-HHHHHHHHHHHhhccccCH--hhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 4455555554 4444 7899999999999876211 111 1167777778888899999999999999998766
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.9 Score=42.22 Aligned_cols=158 Identities=14% Similarity=0.090 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCccccc
Q 040681 255 KVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYL 334 (594)
Q Consensus 255 ~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~ 334 (594)
.-.-+|...|..+++ +|+.+..|.++..---|--+|...+. +
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~-~------------------------------------ 135 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSK-S------------------------------------ 135 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhcccc-C------------------------------------
Confidence 344567888888888 45899999886654444445544321 0
Q ss_pred chhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHH
Q 040681 335 YSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIME 413 (594)
Q Consensus 335 ~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~n 413 (594)
|.+ ..++-.+.++++.|.. ++.++-..+...++||..++.++.|++..|.-|...+..
T Consensus 136 ---------------r~f------EyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqK 194 (293)
T KOG3036|consen 136 ---------------RPF------EYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQK 194 (293)
T ss_pred ---------------Cch------HHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 111 2456667788887764 456778888899999999999999999999888888776
Q ss_pred HHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 414 ITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 414 L~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
|---..+-.-++. .+- .--++..++..++..+.+..+..+...++++.-+|+.+..++
T Consensus 195 IlldD~GL~YiCq-t~e-RF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 195 ILLDDVGLYYICQ-TAE-RFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HhhccccHHHHHH-hHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 5311000000111 000 001123355555555555666778888888888888655433
|
|
| >PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.23 Score=45.35 Aligned_cols=93 Identities=18% Similarity=0.332 Sum_probs=74.4
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhhhcCCCCcccchhHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 040681 19 LLAERVRSAVDESESFKAECAEVGKQVDRLSQMLRTVVRFTTPAQSLYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLR 98 (594)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~l~~~c~~~g~~~ 98 (594)
.|.+.|..+++.+..|+.-...+.+-++.+.+...+.-... +..++|-+..+..+.++|+++..|+.+|.+.+..
T Consensus 17 eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~----~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~- 91 (147)
T PF05659_consen 17 ELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLN----VELDRPRQEEIERLKELLEKGKELVEKCSKVRRW- 91 (147)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh----hhcCCchhHHHHHHHHHHHHHHHHHHHhccccHH-
Confidence 37788999999999999999999999999999999987775 6788888999999999999999999999864421
Q ss_pred eeeeecchhhHHHHHHHHHhh
Q 040681 99 RVVTIVSAADFRKLLNLLDAS 119 (594)
Q Consensus 99 r~~~~~~~~~~~~~~~~l~~~ 119 (594)
.+.-..-|.+-+..++.+
T Consensus 92 ---n~~kk~~y~~Ki~~le~~ 109 (147)
T PF05659_consen 92 ---NLYKKPRYARKIEELEES 109 (147)
T ss_pred ---HHHhhHhHHHHHHHHHHH
Confidence 000134555566666643
|
Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif []. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.04 E-value=3.6 Score=46.01 Aligned_cols=140 Identities=10% Similarity=0.193 Sum_probs=82.8
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
.++..|.++|.+.+..+++-|...++.|+..... .. ++ +.-.+.++..|+...+..++..|+-.|..+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s----~d-av-------K~h~d~Ii~sLkterDvSirrravDLLY~m 396 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFS----ID-AV-------KKHQDTIINSLKTERDVSIRRRAVDLLYAM 396 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccch----HH-HH-------HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3677788888888888888777777766633211 12 11 223567777777666688888888888888
Q ss_pred hcCChhhhhccHHHHHHhccCCCHHHHHHHHHHH----HHhcCCCCccchhhHH-------HHHHcCChHHHHHhccCCc
Q 040681 467 ARTFPARETRVIGPLVAHLSHRNQEVATEAAIAL----QKFASPENFLCTEHSK-------AIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL----~nl~~~~~~l~~~~~~-------~i~~~g~i~~Lv~lL~~~~ 535 (594)
|.... ...++..|++.|..-+..++++-+.=+ -+++.+=++ =++-.- ..++.+..-.+++....++
T Consensus 397 cD~~N--ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W-yVdviLqLiriagd~vsdeVW~RvvQiVvNne 473 (938)
T KOG1077|consen 397 CDVSN--AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSW-YVDVILQLIRIAGDYVSDEVWYRVVQIVVNNE 473 (938)
T ss_pred hchhh--HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHhcccccHHHHHHhheeEecch
Confidence 85443 335677777777777776666543322 233332221 011110 1223445566777766666
Q ss_pred hHhHhH
Q 040681 536 RTQLHG 541 (594)
Q Consensus 536 ~vq~~A 541 (594)
.+|.-|
T Consensus 474 dlq~ya 479 (938)
T KOG1077|consen 474 DLQGYA 479 (938)
T ss_pred hhhHHH
Confidence 555433
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.9 Score=47.85 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 453 PTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+|+++|+..++.|+.+.+.-....+..|+.++.+...+|+..|..+|..++.
T Consensus 387 ~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~ 439 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISV 439 (823)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999988777777889999999999999999999999999865
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.5 Score=40.40 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=83.3
Q ss_pred HHHHHhcCChHHHHHhhccCCC-----HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHH
Q 040681 191 KKIIVEEGGVPPLLKLLKETAS-----SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS--IMKVQIQVASL 263 (594)
Q Consensus 191 ~~~i~~~g~I~~Lv~LL~~~~~-----~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~a 263 (594)
...++..||+..|++++.++.. .++...+..++..|-.+.-.-+...+...|..++..+... +..+.+.+..+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567889999999999998762 4677778888888877766566777777788888888765 68899999999
Q ss_pred HHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 264 VARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 264 L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
|-++..+++.....+.+.=-++.|+.+|+..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~ 114 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVS 114 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcC
Confidence 9999998877667776655688888888764
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.48 Score=44.73 Aligned_cols=91 Identities=13% Similarity=0.215 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH-
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI- 478 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i- 478 (594)
++.++.|+..++..|+ ...+.+ ....++.+...|++.+ +.||..|+.+|..|....-.+-.|-+
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~~-----------ve~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPNL-----------VEPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcHH-----------HHhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceeehhhhh
Confidence 4678899999998776 333322 2337788889998776 99999999999999965544434544
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 479 GPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 479 ~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++.+|.+.+++|+..|...+..+..
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999876
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.22 Score=43.43 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 040681 152 DPMLSWVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227 (594)
Q Consensus 152 ~~i~~~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La 227 (594)
+.-...+..|+..| .+.|+....-|+.-|+.+++..|.-+..+-+.|+=..+++|+.+++ ++++.+|+.++..+-
T Consensus 39 ~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d-~eVr~eAL~avQklm 114 (119)
T PF11698_consen 39 ENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHED-PEVRYEALLAVQKLM 114 (119)
T ss_dssp SGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SS-HHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 33445677788888 4557778888889999999998888888878899999999999998 999999999987663
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.11 Score=33.75 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+|.+++++++++++||..|+.+|.++++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999986
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=93.82 E-value=5.1 Score=41.40 Aligned_cols=109 Identities=16% Similarity=0.241 Sum_probs=67.7
Q ss_pred CcHHHHHHHhhhCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH--HHHHhc---------CCCh
Q 040681 387 KGLLCLAKLVEKEQG--ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL--LRVIND---------LDSP 453 (594)
Q Consensus 387 g~l~~L~~LL~~~~~--~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L--l~lL~s---------~~~~ 453 (594)
...|.|.+.+..+.. .++..++.||.-++.++..+.+--... ...++.+ ..+++. .+++
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--------~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--------MESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--------HHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 367888888876654 455667778877766554443211100 0123311 112222 1224
Q ss_pred hhHHHHHHHHHHhhcCChhh---h--hccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 454 TLQIPAIKSIGSLARTFPAR---E--TRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~---~--~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
.+...|+.+-+-|...-+.. . ...++.|+.+|++.+.+||..|..+|.-+
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 67788888877777544431 1 25789999999999999999999988765
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.26 Score=52.34 Aligned_cols=169 Identities=15% Similarity=0.132 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhccCChhhHH-HHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHhhhcCChhhHH
Q 040681 361 LKIACAEALWMLARGSVANSR-RISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAE-SNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~-~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~r~~~~~~~~~~~~~ 438 (594)
++..|.+++..+. -++..+. .+.-..+.......|.+..-..|..++|++.||++.-- +-|..+. ...+.
T Consensus 407 v~~aA~Ra~~VyV-LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s-------~~eR~ 478 (728)
T KOG4535|consen 407 VKAAASRALGVYV-LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS-------FQERF 478 (728)
T ss_pred HHHHHHhhceeEE-eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH-------HHHHH
Confidence 3445555555443 2343322 23333444555555555566889999999999984321 1111111 11111
Q ss_pred HHHHHHHHHh-----cCCChhhHHHHHHHHHHhhcCChhhhh--------ccHHHHH-HhccCCCHHHHHHHHHHHHHhc
Q 040681 439 VVDQLLRVIN-----DLDSPTLQIPAIKSIGSLARTFPARET--------RVIGPLV-AHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 439 ~v~~Ll~lL~-----s~~~~~v~~~a~~aL~~La~~~~~~~~--------~~i~~Lv-~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
.-..|.+.+. +.+.+.|+..+.++|+|+..--...+. +.+..+. ..+-.+...|+-+||.+++|+.
T Consensus 479 sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf 558 (728)
T KOG4535|consen 479 SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF 558 (728)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh
Confidence 1122333333 334478999999999999863332221 2222222 2234567889999999999997
Q ss_pred CCCCccchhhHHHHHHcCChHHHHHhccCCch--HhHh
Q 040681 505 SPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR--TQLH 540 (594)
Q Consensus 505 ~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~--vq~~ 540 (594)
..+.. ..+..=...-..+.|+.|+.+... ++..
T Consensus 559 kn~a~---~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 559 KNPAL---PLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred cCccc---cccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 62221 011111112256778888885543 5544
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.091 Score=34.14 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.3
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++|.+++++.+.+++||..|+.+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36889999999999999999999998853
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=93.63 E-value=4.9 Score=41.96 Aligned_cols=204 Identities=13% Similarity=0.166 Sum_probs=135.2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC-CcCCCccCccchhhHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE-TFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~v~~~~si~~l~ 313 (594)
.+...+.+..|+..|..-+-+.+..++.+..++-...... ...|.++.|... . + .+..++
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~--------~~~p~v~yl~~~~p---e--------il~~L~ 131 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGS--------RSPPTVDYLERHRP---E--------ILDILL 131 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTT--------B--HHHHHHHT--T---H--------HHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCC--------CCCchHHHHHhCCH---H--------HHHHHH
Confidence 4556788999999999999999999999999987653211 111223333222 1 0 011111
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLA 393 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~ 393 (594)
.+ +++|++ --.+-..|+.. ...+..++.+.....+-.+.
T Consensus 132 ~g------------------------------------y~~~di----al~~g~mlRec-~k~e~l~~~iL~~~~f~~ff 170 (335)
T PF08569_consen 132 RG------------------------------------YENPDI----ALNCGDMLREC-IKHESLAKIILYSECFWKFF 170 (335)
T ss_dssp HG------------------------------------GGSTTT----HHHHHHHHHHH-TTSHHHHHHHHTSGGGGGHH
T ss_pred HH------------------------------------hcCccc----cchHHHHHHHH-HhhHHHHHHHhCcHHHHHHH
Confidence 11 111111 12233334444 45788888898888999999
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 394 KLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 394 ~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
+.++.++=++...|..++..+- ..+..+.. .|..++ ...++....++|.+.+ .-.+..+++.||.|-.+....
T Consensus 171 ~~~~~~~Fdiasdaf~t~~~ll---t~hk~~~a-~fl~~n--~d~ff~~~~~Ll~s~N-YvtkrqslkLL~ellldr~n~ 243 (335)
T PF08569_consen 171 KYVQLPNFDIASDAFSTFKELL---TRHKKLVA-EFLSNN--YDRFFQKYNKLLESSN-YVTKRQSLKLLGELLLDRSNF 243 (335)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHH---HSSHHHHH-HHHHHT--HHHHHHHHHHHCT-SS-HHHHHHHHHHHHHHHHSGGGH
T ss_pred HHhcCCccHhHHHHHHHHHHHH---hccHHHHH-HHHHHH--HHHHHHHHHHHccCCC-eEeehhhHHHHHHHHHchhHH
Confidence 9999999899888888888764 45666655 355444 4668888889998766 888999999999998654433
Q ss_pred hh--------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 474 ET--------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 474 ~~--------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+. .-+..+..+|.+.+..+|.+|-...-=|++
T Consensus 244 ~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 244 NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 21 346788889999999999999998887776
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.73 Score=43.60 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=78.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccC--------CCHHHHHHHHHHHHHhhCCh
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKET--------ASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~--------~~~~v~e~A~~aL~~La~~~ 230 (594)
.++..+..+.... +.+..|.-..+.++ ...+.+++.||+..|+.+|..- .....+.+++.+|..|..+.
T Consensus 70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 3566776654332 44555544444433 4567888999999999988541 22578889999999999988
Q ss_pred hHHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 231 ERVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 231 ~~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
.....++ ..+++..|+..|.+++..++..+..+|..+|
T Consensus 148 ~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 148 YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8888888 5789999999999999999999999999887
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=8.9 Score=42.01 Aligned_cols=265 Identities=13% Similarity=0.119 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhh----CChhH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIA----NDQER 232 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La----~~~~~ 232 (594)
|+-+-.++..-++..|..-+..|..+-.- |.. +.+. -....+.|..+|.+++ ++++..+-.+|+++- .++++
T Consensus 169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 169 IPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcCccc
Confidence 33344466777889999888888877544 222 2221 1234667888898888 999987777777653 33332
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
- --...++.++..+.++++.++..|..-|.....-.+ ..-..--.|++..++..+.+.. . +++.
T Consensus 246 ~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc~s~~e---~-------~~i~-- 309 (675)
T KOG0212|consen 246 M---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPCLSDTE---E-------MSIK-- 309 (675)
T ss_pred c---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccCCCCCc---c-------ccHH--
Confidence 1 113468899999999999999988777777655332 1111111223333333322210 0 0000
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC-cHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK-GLLC 391 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g-~l~~ 391 (594)
....+.-.-|..++. .+..... ++.| .+..
T Consensus 310 -----------------------------------------------~~a~~~n~~l~~l~s-~~~~~~~-id~~~ii~v 340 (675)
T KOG0212|consen 310 -----------------------------------------------EYAQMVNGLLLKLVS-SERLKEE-IDYGSIIEV 340 (675)
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHh-hhhhccc-cchHHHHHH
Confidence 111111222333332 1111111 3333 4688
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|.+.+.++..+.+..++.-+.-|-.-+ .+. .++-+.+ +...|++-|.+.+ +.|...++..+.++|.+..
T Consensus 341 l~~~l~~~~~~tri~~L~Wi~~l~~~~-p~q-----l~~h~~~----if~tLL~tLsd~s-d~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 341 LTKYLSDDREETRIAVLNWIILLYHKA-PGQ-----LLVHNDS----IFLTLLKTLSDRS-DEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHhhC-cch-----hhhhccH----HHHHHHHhhcCch-hHHHHHHHHHHHHHhcCcc
Confidence 888888888889888877776554222 121 2333332 6777888776554 8899999999999997665
Q ss_pred hhhhccHHHHHHhc---cCCCHHHHHHHHHHHHHh
Q 040681 472 ARETRVIGPLVAHL---SHRNQEVATEAAIALQKF 503 (594)
Q Consensus 472 ~~~~~~i~~Lv~lL---~~~~~~v~~~Aa~aL~nl 503 (594)
.. +.++.+..+| .....-+...+...+..+
T Consensus 410 ~~--~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 410 SP--NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred cc--cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 42 3333333333 443333444444444444
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.5 Score=49.25 Aligned_cols=127 Identities=11% Similarity=0.200 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
+.....-+...|..++.- +...+.++..+|.+.++.+...|+++|..++ .++..-+ +...
T Consensus 223 qlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS----~~p~alk-----------~Aa~ 282 (948)
T KOG1058|consen 223 QLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLS----NDPTALK-----------AAAS 282 (948)
T ss_pred HHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEcc----CCHHHHH-----------HHHH
Confidence 334455666666555552 2345899999999999999999999998876 4553222 2556
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.++.++.+.++-.+..-..--|..+.......-.|.+-.++++|++.+.+|++.+......++..+|
T Consensus 283 ~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN 349 (948)
T KOG1058|consen 283 TYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN 349 (948)
T ss_pred HHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence 6666666555445543333333333322111122667778889999999999999988888887565
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.45 Score=37.79 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC
Q 040681 216 QSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFAREN 282 (594)
Q Consensus 216 ~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g 282 (594)
.+.|.||+++++..+..-..+-+.+.++.++++.++. ...+|..+..+|.-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4679999999999888888888889999999999854 88899999999999987 556777776654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.54 Score=44.38 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC-HHHHHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG-VPTIVN 247 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~-i~~Lv~ 247 (594)
++.+|..++.+++.++..-+... +..+|.+...|++++ +.++++|+.+|.+|...+-.+. .|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDED-PLVRKTALLVLSHLILEDMIKV----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHcCceee----hhhhhHHHHH
Confidence 56789999999999997654332 245788999999998 9999999999999986432211 122 377888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 248 VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 248 lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+|.+++++++..|...+..+.... ....+. ..++.++..|+..
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~--~~~~i~--~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKR--NPNIIY--NNFPELISSLNNC 113 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhc--cchHHH--HHHHHHHHHHhCc
Confidence 899999999999999999998751 222332 2455555555443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.75 Score=53.99 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=100.9
Q ss_pred cHHHHHHHhh----hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 388 GLLCLAKLVE----KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 388 ~l~~L~~LL~----~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
..|.++.+.+ .+++++|..|.-||..+..+. ..++. .-.+.|..++..++++.++..++-++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fce-----------s~l~llftimeksp~p~IRsN~Vval 985 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCE-----------SHLPLLFTIMEKSPSPRIRSNLVVAL 985 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHH-----------HHHHHHHHHHhcCCCceeeecchhec
Confidence 4566666663 356899999999998877553 22333 25788999999888899999999999
Q ss_pred HHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-Hh
Q 040681 464 GSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQ 538 (594)
Q Consensus 464 ~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq 538 (594)
|.|+-.+++.-...-+.|.+.|.+.++.||+.|...|.++.. ...|--.|-++.+..+|..+++ +.
T Consensus 986 gDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL---------ndmiKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 986 GDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL---------NDMIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred cchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH---------hhhhHhcccHHHHHHHhcCCcHHHH
Confidence 999988887766778899999999999999999999999976 1223346888888888887776 43
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.87 E-value=23 Score=41.12 Aligned_cols=111 Identities=21% Similarity=0.287 Sum_probs=80.1
Q ss_pred CcchHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--
Q 040681 152 DPMLSWVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-- 228 (594)
Q Consensus 152 ~~i~~~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-- 228 (594)
+++..-+..+...+ +..++.+|.-++..++++++. ..+.....+.+|.+++|+.+.. ..+++.|...+.++..
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLL 307 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhc
Confidence 44544555566655 456777888888889988865 3347777889999999998887 8999999998888875
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 229 ~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+.+. ... .-..+.+++..++++..++...+.....|+.
T Consensus 308 ~~~~--d~~-~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~ 345 (759)
T KOG0211|consen 308 DDDD--DVV-KSLTESLVQAVEDGSWRVSYMVADKFSELSS 345 (759)
T ss_pred CCch--hhh-hhhhHHHHHHhcChhHHHHHHHhhhhhhHHH
Confidence 2221 111 2357888888888888888877777666653
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.27 Score=42.86 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=57.7
Q ss_pred ChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 199 GVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
.+..|+++|..++++.+..-|+-=|+.+++ .|..|..+-+.|+=..+..++.+++++|+..|..+++.|-.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 367788999544337777788888999988 677788887899999999999999999999999999988653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.82 E-value=6.1 Score=40.30 Aligned_cols=247 Identities=15% Similarity=0.189 Sum_probs=144.1
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-ChHHHHHhhccC--CCHHHHHHHHHHHHHhhCChhH
Q 040681 157 WVWSYIAAI-QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEG-GVPPLLKLLKET--ASSEAQSAAATALYNIANDQER 232 (594)
Q Consensus 157 ~i~~lv~~L-~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g-~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~~~~ 232 (594)
++.+++..| +.=++-.+.-|+.+|.++... ++.|..+..+. .-..++.+++.. . .++|-...-.++.|+.+++.
T Consensus 149 LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~-~qlQY~SL~~iw~lTf~~~~ 226 (432)
T COG5231 149 LFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGV-KQLQYNSLIIIWILTFSKEC 226 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHhcCHHH
Confidence 444555533 455666899999999999987 78888776554 345688888774 4 68899999999999988877
Q ss_pred HHHHHh-cCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHH--hHHHHHHcCChhhHHHhhhcCCcCCCccCccc-hh
Q 040681 233 VRVIVS-ELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDAL--AQDDFARENVIRPLVTLLSFETFVDDPRANSG-KQ 307 (594)
Q Consensus 233 ~~~iv~-~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~-~~ 307 (594)
.+.|-+ ..-+.-|+++.+.. ..+|-.-++.++.|++...|. ....+. .|-+.+-|++|....-.++. +.. -.
T Consensus 227 aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEe--l~~di~ 303 (432)
T COG5231 227 AQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEE--LVIDIE 303 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHH--HHHHHH
Confidence 633332 33577788888876 778888999999999874432 233332 34455566666544111111 000 00
Q ss_pred hHHHHHHH-hhhhc-cccc-c--cCCCcccccchhccccCC--Cccc----cc-----------cccCChHHHHHHHHHH
Q 040681 308 SIHTIVQI-NKEME-KNSF-V--GSKNYRPYLYSEYCSSRS--GQNR----KD-----------RENEKPEVKIKLKIAC 365 (594)
Q Consensus 308 si~~l~l~-~~~~~-~~~~-~--~~g~~~~L~~~~~~~s~~--~~~~----~~-----------~~~~dp~~k~~l~~~a 365 (594)
.|++.+-. +.... -+.+ . .+|..+.--+ +.+.+ ..+. ++ -....|.+ ....|
T Consensus 304 ~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~---H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt---~i~vA 377 (432)
T COG5231 304 RIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPY---HHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT---WICVA 377 (432)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCc---ccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc---eEeee
Confidence 11111100 00000 0111 1 3344331100 00000 0000 00 00000000 01234
Q ss_pred HHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHH
Q 040681 366 AEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEI 414 (594)
Q Consensus 366 ~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL 414 (594)
+.=+..+.+..|+....+...|+=..++.|+.+++++++..|..++.-+
T Consensus 378 c~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 378 CSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 5556666666788888899999999999999999999999999998754
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=92.80 E-value=13 Score=38.85 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=130.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHH-----HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKK-----IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~-----~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~ 232 (594)
+..++..|..-+-+.|.+++....++.+.....+. .+. ...-..|..|++..+++++-..+...|+.+..++..
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHH
Confidence 34467777888999999999888888776444432 222 222223333343333367878888899999999888
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCC---hhhHHHhhhcCCcCCCccCccchhhH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENV---IRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
.+.|.....+..+.+....++-++...|..++..+-..++..-..+...+- +.....+|.+++
T Consensus 157 ~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~N-------------- 222 (335)
T PF08569_consen 157 AKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSN-------------- 222 (335)
T ss_dssp HHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SS--------------
T ss_pred HHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCC--------------
Confidence 888888888888999999999999999999999976656544333333221 233344444431
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhH----HHHHh
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANS----RRISE 385 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~----~~i~e 385 (594)
-..++.+...|+.+- .+..+. +.+.+
T Consensus 223 -------------------------------------------------YvtkrqslkLL~ell-ldr~n~~vm~~yi~~ 252 (335)
T PF08569_consen 223 -------------------------------------------------YVTKRQSLKLLGELL-LDRSNFNVMTRYISS 252 (335)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHH-HSGGGHHHHHHHTT-
T ss_pred -------------------------------------------------eEeehhhHHHHHHHH-HchhHHHHHHHHHCC
Confidence 123566677777763 244443 33445
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
..-+..++.||++....+|..|-...--..+.+...+.++.
T Consensus 253 ~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~ 293 (335)
T PF08569_consen 253 PENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVD 293 (335)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHH
Confidence 56788899999999999999998888766655555555555
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.71 E-value=3.3 Score=42.57 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=79.4
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-Ch-hHH
Q 040681 157 WVWSYI-AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQ-ERV 233 (594)
Q Consensus 157 ~i~~lv-~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~-~~~ 233 (594)
.+..+| ..+++.++.+|..|+.+|+-.+--+.+... ..++.+.+.++.++ ..++..|+.++..+.. ++ +..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDD-EEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCchhc
Confidence 344454 577889999999999999988876543322 33677888887666 9999999999998864 22 211
Q ss_pred HH-------HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 234 RV-------IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 234 ~~-------iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
.. .-....+..+.+.|.+.+++++..++..+++|--++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 11 122345777888888889999999999999987644
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=92.60 E-value=25 Score=41.02 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=55.9
Q ss_pred HHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhc----CCC----HHHHHHHH
Q 040681 194 IVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLS----DSI----MKVQIQVA 261 (594)
Q Consensus 194 i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~----~~~----~~v~~~aa 261 (594)
+.+.||+..|+.+|.+.. ..+........|..++.-+.+|+.+++.|+++.|+..|. .+. +++-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 345699999999987632 135555677788888889999999999999999999885 323 56666666
Q ss_pred HHHHHHhh
Q 040681 262 SLVARMAE 269 (594)
Q Consensus 262 ~aL~~La~ 269 (594)
.++..|..
T Consensus 193 ~IiE~ll~ 200 (802)
T PF13764_consen 193 EIIESLLS 200 (802)
T ss_pred HHHHHHHH
Confidence 66666543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.52 E-value=17 Score=43.37 Aligned_cols=269 Identities=19% Similarity=0.203 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC----ChhHHHHHHhcCCHH
Q 040681 169 QLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN----DQERVRVIVSELGVP 243 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~----~~~~~~~iv~~g~i~ 243 (594)
..+.|.+|+.-|..++..- ++.+- .-.+|.++.|+.++. ..||..|+.+|..+-. -+..-..|.-+=.+|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP 510 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPPSDANIFPEYLFP 510 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhh
Confidence 4568899999999888642 22211 246899999999998 9999999998887642 122233444455688
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhccc
Q 040681 244 TIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKN 322 (594)
Q Consensus 244 ~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~ 322 (594)
.|-.++.+. ..-+|-.-|..|..||..- .+ |.+.+--.....++++...+...
T Consensus 511 ~L~~l~~d~~~~~vRiayAsnla~LA~tA--~r--Fle~~q~~~~~g~~n~~nset~~---------------------- 564 (1431)
T KOG1240|consen 511 HLNHLLNDSSAQIVRIAYASNLAQLAKTA--YR--FLELTQELRQAGMLNDPNSETAP---------------------- 564 (1431)
T ss_pred hhHhhhccCccceehhhHHhhHHHHHHHH--HH--HHHHHHHHHhcccccCccccccc----------------------
Confidence 888888884 5667877888888887521 11 10100000111122222100000
Q ss_pred ccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-hhHHHHHhhCcHHHHHHHhhhC-C
Q 040681 323 SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV-ANSRRISETKGLLCLAKLVEKE-Q 400 (594)
Q Consensus 323 ~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~-~~~~~i~e~g~l~~L~~LL~~~-~ 400 (594)
. ..-+.+ ...+..........|..+++ -+++.+.+. |-.|....... .
T Consensus 565 --------~-------------------~~~~~~-~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~--i~~LC~FFGk~ks 614 (1431)
T KOG1240|consen 565 --------E-------------------QNYNTE-LQALHHTVEQMVSSLLSDSPPIVKRALLES--IIPLCVFFGKEKS 614 (1431)
T ss_pred --------c-------------------cccchH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHH--HHHHHHHhhhccc
Confidence 0 000000 01122222233333333333 334444444 33333333221 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh----------hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 401 GELQFNCLMTIMEITAAAESNADLRRAAFKTNSP----------AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~----------~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++...=+. +.+...+..+|- +|..+-. ..+.+++.|..-|.+.. +.|.+.|+++|..|+..+
T Consensus 615 ND~iLshLi-----TfLNDkDw~LR~-aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E-E~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 615 NDVILSHLI-----TFLNDKDWRLRG-AFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE-EAVIVSALGSLSILIKLG 687 (1431)
T ss_pred ccchHHHHH-----HHhcCccHHHHH-HHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc-hhhHHHHHHHHHHHHHhc
Confidence 111111011 112223444444 2433222 24557777777776655 788899999999999654
Q ss_pred hhhhh---ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 471 PARET---RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 471 ~~~~~---~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
--.+. .++....-+|-+.+.-+|..++..|...+.
T Consensus 688 ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 688 LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 33332 445566667778888999999998887654
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.93 Score=45.17 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHh
Q 040681 213 SEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL 290 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~l 290 (594)
......|+.+|--++. ++.+|..+.+..++..|+.+|.. .++.++..+..+|..+...+|.+.+.|.+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 3445567778877776 89999999999999999999954 489999999999999988899999999999999999999
Q ss_pred hhcCC
Q 040681 291 LSFET 295 (594)
Q Consensus 291 L~~~~ 295 (594)
+++..
T Consensus 185 lk~~~ 189 (257)
T PF08045_consen 185 LKSKS 189 (257)
T ss_pred Hcccc
Confidence 98774
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.36 E-value=6.5 Score=46.15 Aligned_cols=243 Identities=14% Similarity=0.093 Sum_probs=129.2
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~ 275 (594)
+.|..|+.-|++.+ ..++.-|+.-++.++. .+ ..+++ -+|...+.++.-. +...-..++-+|+.|+...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 56667777777777 7888888888888876 44 22221 2455556655443 45566678888888875431111
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
..+. .++|.+++-|..+.... ....
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G----------------------------------------------~~s~------- 440 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRG----------------------------------------------QHSV------- 440 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhc----------------------------------------------cccc-------
Confidence 1111 13344443333221000 0000
Q ss_pred HHHHHHHHHHHHHHHHhccCChhh-HHHHHhhCcHHH-HHHHhhhCCHHHHHHHHHHHHHHH-HHh--------------
Q 040681 356 EVKIKLKIACAEALWMLARGSVAN-SRRISETKGLLC-LAKLVEKEQGELQFNCLMTIMEIT-AAA-------------- 418 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~-~~~i~e~g~l~~-L~~LL~~~~~~v~~~A~~aL~nL~-~~~-------------- 418 (594)
...++..|+.++|.++++.... -+-+. ....+. |...+-+.+-..+..|..|+.+.. +-.
T Consensus 441 --G~~VRDaAcY~~WAf~Rays~~~l~p~l-~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy 517 (1133)
T KOG1943|consen 441 --GQHVRDAACYVCWAFARAYSPSDLKPVL-QSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDY 517 (1133)
T ss_pred --ccchHHHHHHHHHHHHhcCChhhhhHHH-HHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcch
Confidence 0135777888888887654331 01111 111111 122223444567777777776542 000
Q ss_pred -------cCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh-ccHHHHHHhccCCCH
Q 040681 419 -------ESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET-RVIGPLVAHLSHRNQ 490 (594)
Q Consensus 419 -------~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~-~~i~~Lv~lL~~~~~ 490 (594)
....++... +...++....+++.|+.-=-.|-+..+++.++.+|.+|+...+..-. +..++|+.-..+.+.
T Consensus 518 ~sV~~rsNcy~~l~~~-ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~ 596 (1133)
T KOG1943|consen 518 FSVTNRSNCYLDLCVS-IAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDA 596 (1133)
T ss_pred hhhhhhhhHHHHHhHH-HHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCCh
Confidence 001122221 22333334456666553211244588999999999999976664433 778999988877777
Q ss_pred HHHHHHHHHHHHhc
Q 040681 491 EVATEAAIALQKFA 504 (594)
Q Consensus 491 ~v~~~Aa~aL~nl~ 504 (594)
..+.-...+.+.++
T Consensus 597 ~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 597 SMRHGVFLAAGEVI 610 (1133)
T ss_pred HHhhhhHHHHHHHH
Confidence 76655444444443
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.7 Score=49.24 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=113.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-HhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHh
Q 040681 161 YIAAIQMGQLSDRIEAAIELA-SLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVS 238 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~-~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~ 238 (594)
++.+.+.+..+.+..+..+|. .+.....+. ...++++..++.......-.-++..++.||+. ++..|..|++
T Consensus 509 Llrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~k 582 (748)
T KOG4151|consen 509 LLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILK 582 (748)
T ss_pred HHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHH
Confidence 333334445566666666665 222221111 24566776666554323344578899999998 5556888998
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 239 ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE-NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+-+++.+-.++-..++-.|..++..+.||..+.--....+.+. ..++.....+... .
T Consensus 583 e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~----~------------------ 640 (748)
T KOG4151|consen 583 EKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA----D------------------ 640 (748)
T ss_pred HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh----h------------------
Confidence 8888877667777789999999999999988543344444442 2344333333221 0
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHH-HHHhhCcHHHHHHHh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSR-RISETKGLLCLAKLV 396 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~-~i~e~g~l~~L~~LL 396 (594)
......+++++..++.-....|. ..........++.++
T Consensus 641 -----------------------------------------E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i 679 (748)
T KOG4151|consen 641 -----------------------------------------EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAI 679 (748)
T ss_pred -----------------------------------------hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhh
Confidence 01233445555545433333344 223345678888889
Q ss_pred hhCCHHHHHHHHHHHHHHH
Q 040681 397 EKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~ 415 (594)
.+++.++|...+..+.|+.
T Consensus 680 ~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 680 QDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred cCchhhhhhhhhhhhhhHH
Confidence 9999999998888887754
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.5 Score=49.51 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=124.4
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH-HHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchh
Q 040681 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVA-RMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQ 307 (594)
Q Consensus 229 ~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~-~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~ 307 (594)
...-+...|+.|+...|.++.....+..+-....+|. .+.-.. .. ....++++...+....
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~---~~---~~~v~~~~~s~~~~d~------------ 554 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG---ER---SYEVVKPLDSALHNDE------------ 554 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC---Cc---hhhhhhhhcchhhhhH------------
Confidence 4556788889999999999998888887777777776 222111 11 1224555544443320
Q ss_pred hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 308 si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
+..-...+..++.||+..+...++.++...
T Consensus 555 --------------------------------------------------~~~en~E~L~altnLas~s~s~r~~i~ke~ 584 (748)
T KOG4151|consen 555 --------------------------------------------------KGLENFEALEALTNLASISESDRQKILKEK 584 (748)
T ss_pred --------------------------------------------------HHHHHHHHHHHhhcccCcchhhHHHHHHHh
Confidence 011134567889999887778888899888
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc-CChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT-NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~-~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
+++.+-.++..+++..|..++..+.||. .+.--+-+. +.. +. .++.....+...+ .....++++++..+
T Consensus 585 ~~~~ie~~~~ee~~~lqraa~e~~~NLl---~~~~~~e~s-i~e~~~-----~l~~w~~~~e~~~-E~~~lA~a~a~a~I 654 (748)
T KOG4151|consen 585 ALGKIEELMTEENPALQRAALESIINLL---WSPLLYERS-IVEYKD-----RLKLWNLNLEVAD-EKFELAGAGALAAI 654 (748)
T ss_pred cchhhHHHhhcccHHHHHHHHHHHHHHH---hhHHHHHHH-hhcccc-----CchHHHHHHHhhh-hHHhhhccccccch
Confidence 8888777787788899999999999997 333323332 222 22 2333333333322 34444555555534
Q ss_pred hcCChhhh------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPARE------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~~------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
........ ......++.++.+.+.++|.-....+.|+..
T Consensus 655 ~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 655 TSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred hhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 43222211 1445677888889999999988888888543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=22 Score=43.48 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=52.9
Q ss_pred CcccccCCccc--CCcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHH
Q 040681 140 GIVLTLPPIAS--NDPMLSWVWSYIAAIQ---MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSE 214 (594)
Q Consensus 140 ~~~~~l~~ia~--~~~i~~~i~~lv~~L~---~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~ 214 (594)
++.+|+..|+. .+.+......+|.+|. .+.......|+..+.+....+......-.-.....-|+.-|.+.. -.
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ke-wR 1054 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKE-WR 1054 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchh-HH
Confidence 56677777765 3445555566666662 332233456888888776653322111111223344555455555 78
Q ss_pred HHHHHHHHHHHhhCChh
Q 040681 215 AQSAAATALYNIANDQE 231 (594)
Q Consensus 215 v~e~A~~aL~~La~~~~ 231 (594)
++|.++-||..|-...+
T Consensus 1055 VReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRP 1071 (1702)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999986433
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.63 Score=39.25 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=46.8
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHH--cCChHHHHHhccCCch-HhHhH
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIE--FNAVPPLMRLLRGNDR-TQLHG 541 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~--~g~i~~Lv~lL~~~~~-vq~~A 541 (594)
.++++++..+.+.++.||..||.+|.|++- ..+..++. ......|.+++...++ ||..|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k-------~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISK-------VARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 679999999999999999999999999965 33344432 2466778888888887 88766
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.2 Score=42.60 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=69.1
Q ss_pred CChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhCChhHHHHHHhcC--C--HHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 040681 198 GGVPPLLKLLKE-----TASSEAQSAAATALYNIANDQERVRVIVSEL--G--VPTIVNVLSDSIMKVQIQVASLVARMA 268 (594)
Q Consensus 198 g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g--~--i~~Lv~lL~~~~~~v~~~aa~aL~~La 268 (594)
..+..|+.++.. .+...-....+.++.|++..++.|+.+.+.. . +..|+.+..+.+..-|.-++.+|.|+|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc 131 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC 131 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence 457788887655 1224556778899999999999999999543 3 566666677778888999999999999
Q ss_pred hcCHHhHHHHHH--cCChhhHHHhhh
Q 040681 269 EHDALAQDDFAR--ENVIRPLVTLLS 292 (594)
Q Consensus 269 ~~~~~~~~~i~~--~g~i~~Lv~lL~ 292 (594)
-..+...+.+.. .+.++.|+--|.
T Consensus 132 Fd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 132 FDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred ccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 866555555543 355666666554
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=91.38 E-value=17 Score=36.34 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhhC-ChhHHHHHH-hcCCHHHHHHh-------hcCC--CH---HHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 213 SEAQSAAATALYNIAN-DQERVRVIV-SELGVPTIVNV-------LSDS--IM---KVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~-~~~~~~~iv-~~g~i~~Lv~l-------L~~~--~~---~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
++.++.|..-|+.--. .++-.-.+- ..|.+..|++= |..+ +. .-..+|...|..+|+ +|+.|..|
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~F 87 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMPF 87 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHH
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHHH
Confidence 7778877666654433 233333333 45555555442 2222 22 234456667778888 55899999
Q ss_pred HHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHH
Q 040681 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVK 358 (594)
Q Consensus 279 ~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k 358 (594)
.+++..--|.-.|+..+ .. |++
T Consensus 88 l~a~iplyLyPfL~tt~---k~-------------------------------------------------r~~------ 109 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTS---KT-------------------------------------------------RPF------ 109 (262)
T ss_dssp HHTTGGGGGHHHHH-------S-------------------------------------------------HHH------
T ss_pred HHcCchhhehhhhhccc---cc-------------------------------------------------ccc------
Confidence 99887766666775542 10 111
Q ss_pred HHHHHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh---
Q 040681 359 IKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP--- 434 (594)
Q Consensus 359 ~~l~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~--- 434 (594)
..++-...++++.|.. ++.++...+.+...+|..++.|+.|++-.|.-|...+..|- ..+..+. +....+
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL---~dd~GL~---yiC~t~eRf 183 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL---LDDVGLN---YICQTAERF 183 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH---HSHHHHH---HHTSSHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH---cchhHHH---HHhcCHHHH
Confidence 2456667777887764 34677888889999999999999999988988888887765 2221111 111111
Q ss_pred -hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 435 -AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 435 -~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
+...++..++..+....++.+....+++.-.|+.+..+++
T Consensus 184 ~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~ 224 (262)
T PF04078_consen 184 FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRARE 224 (262)
T ss_dssp HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHH
Confidence 1334566666666667778888899999999987665544
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=91.01 E-value=3.8 Score=47.23 Aligned_cols=107 Identities=21% Similarity=0.264 Sum_probs=78.7
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC--hhhHHHHHHHHH
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS--PTLQIPAIKSIG 464 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~--~~v~~~a~~aL~ 464 (594)
..+|.|++-|.-++..+|..+..++.-+.... ..+... . ...+|+.++.+=.++++ ..|++.|+.+|.
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~---~tL~t~-~------~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~ 978 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTES---ETLQTE-H------LSTLVPYLLSLSSDNDNNMMVVREDALQCLN 978 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhc---cccchH-H------HhHHHHHHHhcCCCCCcchhHHHHHHHHHHH
Confidence 35788888888899999998888887665222 222221 1 23488888877666653 679999999999
Q ss_pred HhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 465 SLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 465 ~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
.|.+..+.+ +..++..|...|+++..-||++|+.+=.+.
T Consensus 979 aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 979 ALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 999844322 237889999999999999999999875544
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.79 E-value=15 Score=43.93 Aligned_cols=272 Identities=15% Similarity=0.103 Sum_probs=146.5
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc----CHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIAN--DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH----DAL 273 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~----~~~ 273 (594)
|+.+...++.-...+.+.+|...|..|+. +++.+-. -++|.++.++.++..+||..|..+|..+-.. .+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34444455544447789999999999987 4444322 3589999999999999999999999887542 122
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
....|.+ -.+|.|-.++.+.+. ...+ ++-..+|..+ .... ..|+
T Consensus 500 daniF~e-YlfP~L~~l~~d~~~-~~vR-iayAsnla~L-----A~tA------------~rFl---------------- 543 (1431)
T KOG1240|consen 500 DANIFPE-YLFPHLNHLLNDSSA-QIVR-IAYASNLAQL-----AKTA------------YRFL---------------- 543 (1431)
T ss_pred cchhhHh-hhhhhhHhhhccCcc-ceeh-hhHHhhHHHH-----HHHH------------HHHH----------------
Confidence 2333332 245555555544211 1100 0000011111 0000 0000
Q ss_pred ChHHHHHHHHHHHHHHHHhc-------------cCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcC
Q 040681 354 KPEVKIKLKIACAEALWMLA-------------RGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAES 420 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~-------------~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~ 420 (594)
+....+.+-. ..+.+..+.. .++=.....||.++++-|+..-+..|..||....
T Consensus 544 ----------e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG- 610 (1431)
T KOG1240|consen 544 ----------ELTQELRQAGMLNDPNSETAPEQNYNTELQALH--HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG- 610 (1431)
T ss_pred ----------HHHHHHHhcccccCcccccccccccchHHHHHH--HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh-
Confidence 0011111100 1112211111 1122344556666666788766666766663321
Q ss_pred CHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh--hhhhccHHHHHHhccCCCHHHHHHHHH
Q 040681 421 NADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP--ARETRVIGPLVAHLSHRNQEVATEAAI 498 (594)
Q Consensus 421 ~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~--~~~~~~i~~Lv~lL~~~~~~v~~~Aa~ 498 (594)
.. +.+ .-++..|..+|+..| +.++..-...|.-+|.-.. ..+.+++|.|.+-|.++++.|...|..
T Consensus 611 k~-------ksN----D~iLshLiTfLNDkD-w~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~ 678 (1431)
T KOG1240|consen 611 KE-------KSN----DVILSHLITFLNDKD-WRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALG 678 (1431)
T ss_pred hc-------ccc----cchHHHHHHHhcCcc-HHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHH
Confidence 10 111 226788899998775 7777666666555543222 124578899999999999999999999
Q ss_pred HHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 499 ALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 499 aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+|.-|+-.+. +..-....|++ -...+|-.++. ++..++
T Consensus 679 ~ls~Lik~~l-l~K~~v~~i~~-----~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 679 SLSILIKLGL-LRKPAVKDILQ-----DVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred HHHHHHHhcc-cchHHHHHHHH-----hhhhheeCchHHHHHHHH
Confidence 9988865333 12222233332 23334555555 777766
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.31 E-value=11 Score=43.24 Aligned_cols=182 Identities=14% Similarity=0.120 Sum_probs=112.9
Q ss_pred hccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhh
Q 040681 207 LKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRP 286 (594)
Q Consensus 207 L~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~ 286 (594)
+.++. +.++-.+...|..+....+....+...+++......|++.+.-|--+|...+..||...| ...+|.
T Consensus 736 l~d~q-vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d 806 (982)
T KOG4653|consen 736 LHDDQ-VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD 806 (982)
T ss_pred hcCCc-ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence 33444 667788888888888755566666678888889999998888888888888888877654 335666
Q ss_pred HHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHH
Q 040681 287 LVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACA 366 (594)
Q Consensus 287 Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~ 366 (594)
|.+--.+.+.+. + .| ..++ .-
T Consensus 807 L~e~Y~s~k~k~---------------------------------------------------~--~d----~~lk--VG 827 (982)
T KOG4653|consen 807 LSEEYLSEKKKL---------------------------------------------------Q--TD----YRLK--VG 827 (982)
T ss_pred HHHHHHhcccCC---------------------------------------------------C--cc----ceeh--HH
Confidence 665322221000 0 00 0011 11
Q ss_pred HHHHHhccC-ChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHH
Q 040681 367 EALWMLARG-SVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLR 445 (594)
Q Consensus 367 ~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~ 445 (594)
.|+.++... ++-+.+.. +-.+.++++.++.++...+..++..+.++|..... .... ..-.++..++.
T Consensus 828 Eai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~---------~vsd-~~~ev~~~Il~ 895 (982)
T KOG4653|consen 828 EAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF---------QVSD-FFHEVLQLILS 895 (982)
T ss_pred HHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh---------hhhH-HHHHHHHHHHH
Confidence 333332211 11111111 13567888888877778899999999998854421 1111 12236677777
Q ss_pred HHhcCCChhhHHHHHHHHHHhhc
Q 040681 446 VINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 446 lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
+.+..++..++..|+-.+..+-.
T Consensus 896 l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 896 LETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHccCCchhhHHHHHHHHHHHHh
Confidence 77777778899999999988874
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.10 E-value=6.2 Score=44.52 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=67.0
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
++=+.+-+++.+.++-++.....++.---+++.+|. +|..|+.+--+..+++|+..|+.+||-+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----------------air~lLh~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----------------AIRRLLHVAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----------------hHHHhhcccccccchHHHHHHHHHheee
Confidence 344555566677777788877666642212222222 5566666633344499999999999998
Q ss_pred hcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+-..+ ...+..|++| .+-++.||--|+.||+=.++
T Consensus 583 l~~dp----~~~~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 583 LFRDP----EQLPSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred EecCh----hhchHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 85433 3467777777 56789999999999997665
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.93 E-value=18 Score=41.03 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
.+++.|.-||+-++..+++ .++..+.+| ++.++.|+..++++|.--|+++ ++. . ++-
T Consensus 570 DVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~---e-Ai~-------- 627 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLK---E-AIN-------- 627 (929)
T ss_pred HHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcH---H-HHH--------
Confidence 5788899999887766676 456667777 5678999999999998666554 332 2 121
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----hhhccHHHHHHhccCCCHHH
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----RETRVIGPLVAHLSHRNQEV 492 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----~~~~~i~~Lv~lL~~~~~~v 492 (594)
+++.|+. ....-||.-|+.+++.+...... +-.++...+.+...++..+.
T Consensus 628 lLepl~~----D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 628 LLEPLTS----DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHhhhhc----ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 4444442 22256788888888877642221 12367788888887766653
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=89.92 E-value=9.3 Score=35.22 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHH-hhCcHHHHHHHhh--hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 362 KIACAEALWMLARGSVANSRRIS-ETKGLLCLAKLVE--KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~-e~g~l~~L~~LL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
...+..++..+-.+.++++..+. .+|.++.+..++. ..+..++..++.+|.- +..+...|. .+. +.
T Consensus 60 ~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~a----Ac~d~~~r~-~I~------~~ 128 (157)
T PF11701_consen 60 LIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSA----ACIDKSCRT-FIS------KN 128 (157)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHH----HTTSHHHHH-CCH------HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHH----HHccHHHHH-HHH------HH
Confidence 34567778887778888887775 6788899999998 6778888888888842 235666666 233 44
Q ss_pred HHHHHHHHHhcCCChh-hHHHHHHHHHH
Q 040681 439 VVDQLLRVINDLDSPT-LQIPAIKSIGS 465 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~-v~~~a~~aL~~ 465 (594)
+++.|-++++..+++. ++..|+-.|..
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7788888886555454 66666655543
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.86 E-value=22 Score=35.16 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC----CCHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHH
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET----ASSEAQSAAATALYNIAN--DQERVRVIVSELGVPTI 245 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~----~~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~L 245 (594)
-...|+.-|..++.+ ++.+..+.++..--.|-.+|..+ ..+-++..+.++++.|.. +++.-..+...+++|..
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345667777777876 88899999887655555566432 236788899999999987 34456677789999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
++.++.|+...+..|+.++..+-.++
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999987654
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=89.75 E-value=14 Score=42.01 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC---CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE---QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~---~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
+..+.+||+|+ |.+. .++.|..++... +..++..|+++|..+. ...++ .
T Consensus 507 ~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~---~~~~~--------------~ 558 (618)
T PF01347_consen 507 KIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLA---KHCPE--------------K 558 (618)
T ss_dssp HHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG---GT-HH--------------H
T ss_pred HHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHHHHHHHHHHHh---hcCcH--------------H
Confidence 45678999998 5555 688888888766 4678888999996553 33331 1
Q ss_pred HHHHHHHHHhcCC-ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc-CCCHHHHH
Q 040681 439 VVDQLLRVINDLD-SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS-HRNQEVAT 494 (594)
Q Consensus 439 ~v~~Ll~lL~s~~-~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~-~~~~~v~~ 494 (594)
+.+.|+.++.+.. +.++|..|...|..-- + ....+..++..|. +.+.+|..
T Consensus 559 v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P--~~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 559 VREILLPIFMNTTEDPEVRIAAYLILMRCN---P--SPSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHT--------HHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcC---C--CHHHHHHHHHHHhhCchHHHHH
Confidence 4456666666543 3778877776665531 1 2356677777774 44455543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.85 E-value=39 Score=36.69 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH---HHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER---VRVIV 237 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~---~~~iv 237 (594)
+..+....+...|..|+..|++.+.+-|.-++.... -.+..++.-|.++.+.+|+.++..+|..+...-.+ ..-++
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 444566677788999999999999884433322221 23445555444544489999999988877652222 22222
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
+ +.-.+..+.++.+++++.++...+..|+.
T Consensus 342 ~--ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 342 N--IALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred h--HHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 1 22345556778899999988888777764
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.35 E-value=10 Score=41.51 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=93.6
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCH----HHHHHHHHHHHHHhhcCHHhH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIM----KVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~----~v~~~aa~aL~~La~~~~~~~ 275 (594)
...+.+++.+++ ...|..|..-|..++.|......++...++..|.++..++.. ++......++..|-.+.- .-
T Consensus 85 a~~i~e~l~~~~-~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGN-NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS 162 (713)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence 445677888888 777777999999999999999999999999999999998843 333333333333322110 00
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
+......+|.....+.+.. + .+
T Consensus 163 W~~~~~~fV~~~a~~V~~~-------------------------------------------------------~--~~- 184 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAK-------------------------------------------------------R--ED- 184 (713)
T ss_pred eeecccHHHHHHHHHHhhh-------------------------------------------------------h--hc-
Confidence 0000000111111110000 0 00
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
......|...|-++..+++...+.+.++--+..|+..|+..+..++..|...+..+.
T Consensus 185 ---a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 185 ---ANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ---ccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 001234555566666677777888888889999999999999988887544444343
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=88.16 E-value=42 Score=36.30 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=94.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCChHHHHHhhccCC-----CHHH-HHHHHHHHHHhhCChh
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDND---RNKKIIVEEGGVPPLLKLLKETA-----SSEA-QSAAATALYNIANDQE 231 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~---~~~~~i~~~g~I~~Lv~LL~~~~-----~~~v-~e~A~~aL~~La~~~~ 231 (594)
+...+...+.+.|..|+--...+++++| .+|+.+.++=|.+.+-+||.+.+ .+.+ +.-+...|.-++++++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455666677788888887888887644 46788999999999999997642 1233 3446677778888887
Q ss_pred H--HHHHHhcCCHHHHHHhhcCC-CHH------HHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 232 R--VRVIVSELGVPTIVNVLSDS-IMK------VQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 232 ~--~~~iv~~g~i~~Lv~lL~~~-~~~------v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
- -..+++ .||.|..++..+ +++ +.+.+-.+|...+.+ +.....+...|+++.+.+.-
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHH
Confidence 3 455654 599999999765 555 788888999888886 45677777889999988764
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=87.90 E-value=2.7 Score=33.41 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcC
Q 040681 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL 240 (594)
Q Consensus 173 ~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g 240 (594)
.+.|++++++++.. +.--..+.+.+.|+.++++....+...++=.+..+|+.++...+..+.+-+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 56789999999875 44445555678999999998876557889999999999999988877776654
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.9 Score=48.36 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=96.5
Q ss_pred cCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhh
Q 040681 352 NEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE-KEQGELQFNCLMTIMEITAAAESNADLRRAAFK 430 (594)
Q Consensus 352 ~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~ 430 (594)
+.||+ ++..|.-||+.+..-+.+.|.. .+|.|+..|+ ++++-++.|+.-+++.++ -.-+.+ .
T Consensus 934 ~sdp~----Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDla---v~fpnl-----i 996 (1251)
T KOG0414|consen 934 FSDPE----LQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLA---VRFPNL-----I 996 (1251)
T ss_pred CCCHH----HHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchh---hhcccc-----c
Confidence 45554 5788888999876666666654 5899999998 667889999999997765 222211 1
Q ss_pred cCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 431 TNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 431 ~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
...-+.|.+-|.+.+ +.++..|..+|.+|-.+.-.+-.|.++.+..+|.+++.+++.-|=.-.-.+
T Consensus 997 ------e~~T~~Ly~rL~D~~-~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 997 ------EPWTEHLYRRLRDES-PSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ------chhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 225577888887666 999999999999999877666679999999999999999888777333333
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=87.60 E-value=37 Score=38.27 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh-hC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 363 IACAEALWMLARGSVANSRRISETKGLLCLAKLVE-KE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 363 ~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~-~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
....+||+|+ |.+. .++.|..++. .. +..++..|+++|..++ ...+. .+
T Consensus 464 ~~~LkaLGN~--g~~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a---~~~p~--------------~v 515 (574)
T smart00638 464 QLYLKALGNA--GHPS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLA---KRDPR--------------KV 515 (574)
T ss_pred eeHHHhhhcc--CChh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH---HhCch--------------HH
Confidence 3467888888 5565 4666666665 21 3478889999998765 32221 13
Q ss_pred HHHHHHHHhcC-CChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc-CCCHHHH
Q 040681 440 VDQLLRVINDL-DSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS-HRNQEVA 493 (594)
Q Consensus 440 v~~Ll~lL~s~-~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~-~~~~~v~ 493 (594)
-+.|+.+..+. .++++|..|.-.|...- + ....+..++..+. +.+.+|.
T Consensus 516 ~~~l~~i~~n~~e~~EvRiaA~~~lm~t~---P--~~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 516 QEVLLPIYLNRAEPPEVRMAAVLVLMETK---P--SVALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcC---C--CHHHHHHHHHHHhhcCcHHHH
Confidence 34455555543 33778877766655431 1 2345666666663 4445553
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=87.58 E-value=5.1 Score=38.31 Aligned_cols=127 Identities=13% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh----------hhHHHHHHHHHHHhc-----CCChhhHHHHHHHHHH
Q 040681 401 GELQFNCLMTIMEITAAAESNADLRRAAFKTNSP----------AAKAVVDQLLRVIND-----LDSPTLQIPAIKSIGS 465 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~----------~~~~~v~~Ll~lL~s-----~~~~~v~~~a~~aL~~ 465 (594)
......+++.|+|||+..+. .++ .+....+ .....++.|+.++.. .+..+-....+..+.|
T Consensus 9 ~~~adl~~MLLsNlT~~~~~---~~~-ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSG---CEK-LLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cchHHHHHHHHHHhccchHH---HHH-HHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 33445678999998833222 221 1221111 134567888887776 2225567789999999
Q ss_pred hhcCChhhhh------cc--HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHH---cCChHHHHHhccCC
Q 040681 466 LARTFPARET------RV--IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIE---FNAVPPLMRLLRGN 534 (594)
Q Consensus 466 La~~~~~~~~------~~--i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~---~g~i~~Lv~lL~~~ 534 (594)
+++....++. +. +..|+..+.+.+..-+.-++.+|.|.+. + .+....++. .+.+|.|+--|..+
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF-d----~~~H~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF-D----TDSHEWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc-c----HhHHHHhcCchhhhhHHHHHhhccCC
Confidence 9986655442 34 6777777788877667778889999987 2 233455554 35667776666654
Q ss_pred ch
Q 040681 535 DR 536 (594)
Q Consensus 535 ~~ 536 (594)
+.
T Consensus 160 Ee 161 (192)
T PF04063_consen 160 EE 161 (192)
T ss_pred Cc
Confidence 43
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.42 E-value=62 Score=37.66 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhh
Q 040681 172 DRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVL 249 (594)
Q Consensus 172 ~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL 249 (594)
.+..++.....++. .+......+.....+|.+-.+..+.+ ..++...+..+..++. .+ +..-+ .--.|.+...+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l 446 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPILP--KERTI-SELLPLLIGNL 446 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccCC--cCcCc-cccChhhhhhc
Confidence 34444433333332 23333344555555666666666666 7777666665555543 22 11111 22467777778
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCC
Q 040681 250 SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKN 329 (594)
Q Consensus 250 ~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~ 329 (594)
++..++|+.+..+.+..+=...+..........-++.++.+-...
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~----------------------------------- 491 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL----------------------------------- 491 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-----------------------------------
Confidence 888999999988877665433321111111222233333321110
Q ss_pred cccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHH
Q 040681 330 YRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLM 409 (594)
Q Consensus 330 ~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~ 409 (594)
+-.++....+.++.++.. . ...+.+...-+.+..-+.+...+++..|+.
T Consensus 492 ----------------------------~wRvr~ail~~ip~la~q-~--~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 492 ----------------------------LWRVRLAILEYIPQLALQ-L--GVEFFDEKLAELLRTWLPDHVYSIREAAAR 540 (759)
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHh-h--hhHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 001223334444444321 1 122332222222222233344567777777
Q ss_pred HHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC--hhhhhccHHHHHHhccC
Q 040681 410 TIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF--PARETRVIGPLVAHLSH 487 (594)
Q Consensus 410 aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~--~~~~~~~i~~Lv~lL~~ 487 (594)
.+..++-. |..++. ....++.++...... +.-.+...+-++.-|+... +.....+.|.+..+..+
T Consensus 541 ~l~~l~~~-----------~G~~w~-~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D 607 (759)
T KOG0211|consen 541 NLPALVET-----------FGSEWA-RLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKD 607 (759)
T ss_pred HhHHHHHH-----------hCcchh-HHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccC
Confidence 77655422 221111 223556665544322 2555666666666555422 22334788999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 488 RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 488 ~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
..+.|+..+|..|-.+... ++. ...+.-..|.+..+....+. ++..|.
T Consensus 608 ~vanVR~nvak~L~~i~~~---L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 608 PVANVRINVAKHLPKILKL---LDE----SVRDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred CchhhhhhHHHHHHHHHhh---cch----HHHHHHHHHHHHHhccCcccchhHHHH
Confidence 9999999999999998651 222 23333344555555555555 776665
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.29 E-value=4.7 Score=43.92 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC---CHHHHHHHHHHHHHhhCChhHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA---SSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~---~~~v~e~A~~aL~~La~~~~~~ 233 (594)
....+...+.+|+...+..|...|.+++.+ ....+.++...|+..|.+++.+++ +.++.....+++..+-.+.-.-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 455677889999999999999999999987 888899999999999999999875 2455555566665554332222
Q ss_pred HHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC
Q 040681 234 RVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~ 294 (594)
+..+...+|...+.+.+-. +..+-..|...|-++...++..++.+.+.--+..|+.+++..
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~ 225 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS 225 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc
Confidence 2223333333444444322 666778888899998888777777887777788888888765
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.73 E-value=77 Score=37.75 Aligned_cols=223 Identities=19% Similarity=0.219 Sum_probs=122.6
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 239 ELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 239 ~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
++++..|...|++.+..|+..||.-+..++...| ..+++ .+|...++++.... +++ +||.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e--~~~-------aWHg------- 399 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAE--DDS-------AWHG------- 399 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCC--chh-------HHHH-------
Confidence 3578888888888899999999999999998876 22222 24555566443321 111 2332
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK 398 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~ 398 (594)
++-+|+.|+...--.-..+ ..++|.+++-|.-
T Consensus 400 ----------------------------------------------acLaLAELA~rGlLlps~l--~dVvplI~kaL~Y 431 (1133)
T KOG1943|consen 400 ----------------------------------------------ACLALAELALRGLLLPSLL--EDVVPLILKALHY 431 (1133)
T ss_pred ----------------------------------------------HHHHHHHHHhcCCcchHHH--HHHHHHHHHHhhh
Confidence 3455666553221000011 1246666665542
Q ss_pred C--------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH-----HHHHhcCCChhhHHHHHHHHHH
Q 040681 399 E--------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL-----LRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 399 ~--------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L-----l~lL~s~~~~~v~~~a~~aL~~ 465 (594)
+ ...++..||..++.+++..+.+ ++. +++..| ...+-+. ....+..|..|+--
T Consensus 432 d~~~G~~s~G~~VRDaAcY~~WAf~Rays~~-~l~------------p~l~~L~s~LL~~AlFDr-evncRRAAsAAlqE 497 (1133)
T KOG1943|consen 432 DVRRGQHSVGQHVRDAACYVCWAFARAYSPS-DLK------------PVLQSLASALLIVALFDR-EVNCRRAASAALQE 497 (1133)
T ss_pred hhhhcccccccchHHHHHHHHHHHHhcCChh-hhh------------HHHHHHHHHHHHHHhcCc-hhhHhHHHHHHHHH
Confidence 2 1357777877777666444322 111 133322 2222222 26677788777766
Q ss_pred hhcCChhh------------------hh-------------ccHHHHHHh-----ccCCCHHHHHHHHHHHHHhcCCCCc
Q 040681 466 LARTFPAR------------------ET-------------RVIGPLVAH-----LSHRNQEVATEAAIALQKFASPENF 509 (594)
Q Consensus 466 La~~~~~~------------------~~-------------~~i~~Lv~l-----L~~~~~~v~~~Aa~aL~nl~~~~~~ 509 (594)
..+...+. +. +...++++- +.+-+..++..|+++|.+++-.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~--- 574 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT--- 574 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh---
Confidence 55432211 00 223444443 3567889999999999997541
Q ss_pred cchhhHHHHHHcCChHHHHHhccCCchHhHhHHHHHHHHHHH
Q 040681 510 LCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLT 551 (594)
Q Consensus 510 l~~~~~~~i~~~g~i~~Lv~lL~~~~~vq~~Al~l~~~~~l~ 551 (594)
.-.-...+..++|++...+++.--.++.-++..++..
T Consensus 575 -----~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 575 -----EPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred -----hHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 1122334678888888877776333444344444433
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.29 E-value=61 Score=37.19 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCC
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
++.++...+.+-+ ++-+.-.+.++..||..++-..++.+..|.++| .++..+-++...-++..++. +|
T Consensus 355 Lm~qI~~fv~dis-DeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie-~~ 423 (865)
T KOG1078|consen 355 LMKQISSFVSDIS-DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIE-EN 423 (865)
T ss_pred HHHHHHHHHHhcc-ccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH-hC
Confidence 3334443443322 666667778888888888888889999999988 45667777777778877765 44
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=85.93 E-value=5 Score=44.51 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
+.|..|+.-|.......|+.. ..++.+++.|.++++..++..|...|-.+| ..+++. +..+
T Consensus 37 k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~c---k~~~~~-----------v~kv 97 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLC---KDNPEH-----------VSKV 97 (556)
T ss_dssp HHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG-----T--T------------HHHH
T ss_pred HHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHH---HhHHHH-----------HhHH
Confidence 457778888888877777744 447999999999999999999999998887 444422 2348
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc---CCCHHHHHHHHHHHH
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS---HRNQEVATEAAIALQ 501 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~---~~~~~v~~~Aa~aL~ 501 (594)
++.|+++|.+.+ +.....+-.+|..|-...+ .+.+..|...+. +++..++..+...|.
T Consensus 98 aDvL~QlL~tdd-~~E~~~v~~sL~~ll~~d~---k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 98 ADVLVQLLQTDD-PVELDAVKNSLMSLLKQDP---KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-HHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 899999998766 5555566677766664332 233444444332 566677887776663
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.13 E-value=74 Score=35.31 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
++..|.+.|..|+...|+- ..+ +=+-+-.|+.+.+..+-..|.-+|.. .++.+.- ..++
T Consensus 319 ~rFsA~Riln~lam~~P~k--v~v---cN~evEsLIsd~Nr~IstyAITtLLK-----TGt~e~i-----------drLv 377 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQK--VSV---CNKEVESLISDENRTISTYAITTLLK-----TGTEETI-----------DRLV 377 (898)
T ss_pred HHHHHHHHHHHHHhhCCce--eee---cChhHHHHhhcccccchHHHHHHHHH-----cCchhhH-----------HHHH
Confidence 3667788888877544431 000 11233345556666665655555532 2332111 1244
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcC
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++...+..-. ++.+.-++-+++.|+..++..+.-++..|...| +.+..+-++.++-||..+..
T Consensus 378 ~~I~sfvhD~S-D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 378 NLIPSFVHDMS-DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred HHHHHHHHhhc-cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 55555554333 677788889999999999987777888888766 67778888888888888765
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=83.91 E-value=3 Score=38.50 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=74.6
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhc--cCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 158 VWSYIA-AIQMGQLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLK--ETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 158 i~~lv~-~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~--~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
+-+.+. ++..++.+....+...+..+-..-+.....+. .+|..+.++.+.. ..+ ..++..++.+|..=+.+...|
T Consensus 44 ~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~-~~~~~~~lell~aAc~d~~~r 122 (157)
T PF11701_consen 44 ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKD-RKVQKAALELLSAACIDKSCR 122 (157)
T ss_dssp HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHccHHHH
Confidence 334443 33344445777888888887776666666666 5677888888888 445 888888888888777777777
Q ss_pred HHHHhcCCHHHHHHhhcCC-CHH-HHHHHHHHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDS-IMK-VQIQVASLVAR 266 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~-~~~-v~~~aa~aL~~ 266 (594)
..|.+. +++.|-+.++.+ +.. ++..|+-.|.+
T Consensus 123 ~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 123 TFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 777664 689999999655 555 78888777765
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=83.88 E-value=4.1 Score=45.20 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI 478 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i 478 (594)
++...+.-|+..|.. ....-|+++.. .++.++.+..+.+ ..||..|++.|..+|...+..-.+++
T Consensus 34 g~~k~K~Laaq~I~k---ffk~FP~l~~~-----------Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPK---FFKHFPDLQEE-----------AINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp S-HHHHHHHHHHHHH---HHCC-GGGHHH-----------HHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred CCHHHHHHHHHHHHH---HHhhChhhHHH-----------HHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 566677766666643 33555555553 6777888877665 88999999999999987655556889
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 479 GPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 479 ~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..|+++|.+.++.....+-.+|..+
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSL 123 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999877765444444444433
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=83.12 E-value=11 Score=35.13 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC--hHHHHHhhccCCCHHHHHHHHHHHHHhhC---
Q 040681 154 MLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG--VPPLLKLLKETASSEAQSAAATALYNIAN--- 228 (594)
Q Consensus 154 i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~--I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--- 228 (594)
...++-.+...|++.++..|-.++.-+.-.+..++ +..+.+.|. +..|++.|+.++++.+.+.++.+|..|-.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34566667778889898888888887777775532 455655554 77889999998768888888888887753
Q ss_pred -ChhHHHHHHhcC---CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 229 -DQERVRVIVSEL---GVPTIVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 229 -~~~~~~~iv~~g---~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
.++-.+.+.... .++.++++++. ....+.+..+|..+-.++|
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 445444444322 23444444443 3455556666666555443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.36 E-value=62 Score=34.96 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 157 WVWSYIAAIQM-GQLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
.|.+++..+.. +..+.+..|...|..+..++ -..|..-. ...+..+++.|....+...++.|.+.|..++.+...|-
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 45556655543 36677888888887776654 22222111 11245567778775448889999999999988654331
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHH-HHHHHHhhcCH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVA-SLVARMAEHDA 272 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa-~aL~~La~~~~ 272 (594)
.=-.+-+|..++..-++...++...|. .++.-+++++|
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P 404 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP 404 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc
Confidence 111122344444444455444444444 44556677776
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=82.31 E-value=1.1e+02 Score=35.92 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=64.7
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCChHHHHHhhcc---CC----CHHHHHHHHHHHHHhhCChhH--H---HHHHhcCC-
Q 040681 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE---TA----SSEAQSAAATALYNIANDQER--V---RVIVSELG- 241 (594)
Q Consensus 175 ~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~---~~----~~~v~e~A~~aL~~La~~~~~--~---~~iv~~g~- 241 (594)
..+.-|...++- ..||+.+++.|+|+.|++.|.. .+ .+++-++...++..|..+... . .......+
T Consensus 141 ~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~ 219 (802)
T PF13764_consen 141 VLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGS 219 (802)
T ss_pred HHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccccccccc
Confidence 344445555554 8999999999999999997741 11 146666666666665542211 1 01011222
Q ss_pred -------HHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCHHhHHHH
Q 040681 242 -------VPTIVNVLSDS----IMKVQIQVASLVARMAEHDALAQDDF 278 (594)
Q Consensus 242 -------i~~Lv~lL~~~----~~~v~~~aa~aL~~La~~~~~~~~~i 278 (594)
+..|++.+.++ ++.+....+++|-+|+..+++.-+.+
T Consensus 220 ~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 220 EEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred ccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 66666666654 68889999999999998765444433
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.42 E-value=3.9 Score=44.68 Aligned_cols=89 Identities=19% Similarity=0.177 Sum_probs=59.7
Q ss_pred HHHHHHHHH-HhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhH
Q 040681 438 AVVDQLLRV-INDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHS 515 (594)
Q Consensus 438 ~~v~~Ll~l-L~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~ 515 (594)
++|..|+.+ +... +++|+.+|+.+||-+|-.. ...++..|++| ++.++.|+.-.+.+|+-.++ ++- .
T Consensus 551 ~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiaca-g~G---~-- 619 (926)
T COG5116 551 GVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACA-GTG---D-- 619 (926)
T ss_pred hhHhhhheeecccC-chHHHHHHHHheeeeEecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhc-CCc---c--
Confidence 367777777 4444 4999999999999988533 24566667777 57889999999999987666 321 0
Q ss_pred HHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 516 KAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 516 ~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.-++..|-.|.+.... |++.|+
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~Am 642 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAM 642 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHH
Confidence 1134445555555555 766654
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=80.13 E-value=85 Score=33.21 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=66.0
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhcc-CCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 158 VWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE-TASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~-~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
|-.++..|. ......|+.++..|..-+.+ +..+..+...|.+..+++.+.. ++++..--.++.++.-++.+...-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 444555555 44567888999999999876 9999999999999999998844 44234444555666666666655555
Q ss_pred HHhcCCHHHHHHhhc
Q 040681 236 IVSELGVPTIVNVLS 250 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~ 250 (594)
+-+.+....++++|+
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556666777788887
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 6e-28
Identities = 66/407 (16%), Positives = 138/407 (33%), Gaps = 43/407 (10%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+AA+ + L+K I+ V +++ ++ T E A L+N+++ +E
Sbjct: 31 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+ I G+P +V +L + V + + + H A+ ++ +V LL+
Sbjct: 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150
Query: 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDREN 352
A + + + N+E K + S + + +
Sbjct: 151 KTN--VKFLAITTD-CLQILAYGNQES-KLIILASGGPQALVNIMRTYTYEK-------- 198
Query: 353 EKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIM 412
L + L +L+ S +N I E G+ L + L NCL T+
Sbjct: 199 --------LLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249
Query: 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472
++ AA + ++ L++++ D + A + +L
Sbjct: 250 NLSDAAT------------KQEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYK 296
Query: 473 -----RETRVIGPLVAHL--SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVP 525
+ I LV + + +++ A AL+ S + A+ +P
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS-RHQEAEMAQNAVRLHYGLP 355
Query: 526 PLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVS 572
+++LL L A AL A+ + + + LV
Sbjct: 356 VVVKLLHPPSHWPLI-KATVGLIRNLALCPANHAPLREQGAIPRLVQ 401
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 65/428 (15%), Positives = 141/428 (32%), Gaps = 71/428 (16%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
A L +L + K + GG+ ++ LL +T + + + L +A +QE
Sbjct: 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQE 173
Query: 232 RVRVIVSELGVPTIVNVL-SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL 290
+I++ G +VN++ + + K+ + ++ ++ + ++ L
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLH 232
Query: 291 LSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350
L+ DP + + T+ ++ K G + L + S
Sbjct: 233 LT------DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLV-QLLGSDD------- 276
Query: 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK--EQGELQFNCL 408
I + A L L + N + + G+ L + V + ++ ++ +
Sbjct: 277 --------INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328
Query: 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468
+ +T+ + + A + ++++++ L + I +LA
Sbjct: 329 CALRHLTSRHQEAEMAQNAVRLHY------GLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382
Query: 469 T----FPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE----------------N 508
P RE I LV L +Q+ ++ + E
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442
Query: 509 FLCTEHSKAII-EFNAVPPLMRLLR-GNDRTQLHGLALEQARVLTALEGADRTVVAQHPE 566
H++ +I N +P ++LL + Q A VL L AQ E
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA-----AGVLCEL--------AQDKE 489
Query: 567 LKELVSEA 574
E +
Sbjct: 490 AAEAIEAE 497
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 61/389 (15%), Positives = 108/389 (27%), Gaps = 53/389 (13%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
L LA N +K II+ GG L+ +++ + + L ++
Sbjct: 157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
IV G+ + L+D ++ + +++ A E ++ LV LL
Sbjct: 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLG 273
Query: 293 FETFVDDPRANSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDRE 351
N + + + KN V L +
Sbjct: 274 ------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-------- 319
Query: 352 NEKPEVKIKLKIACAEALWMLARGSVANSR---RISETKGLLCLAKLVEKEQGELQFNCL 408
+ + AL L + GL + KL+
Sbjct: 320 ------REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373
Query: 409 MTIMEITAAAESNAD--------------LRRAAFKTNSPAAKAVVDQLLRVINDLDSPT 454
+ ++ A +N L RA T + Q + +
Sbjct: 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF--VEGVRMEE 431
Query: 455 LQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL 510
+ ++ LAR R I V L + + AA L + A +
Sbjct: 432 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--- 488
Query: 511 CTEHSKAIIEFNAVPPLMRLLR-GNDRTQ 538
E ++AI A PL LL N+
Sbjct: 489 --EAAEAIEAEGATAPLTELLHSRNEGVA 515
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 3e-22
Identities = 62/414 (14%), Positives = 135/414 (32%), Gaps = 56/414 (13%)
Query: 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234
A L +L+ + I + GG+P L+K+L + A T L+N+ QE +
Sbjct: 76 CTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 235 VIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293
+ V G + +V +L+ + +K + +A + ++ + LV ++
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193
Query: 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353
T+ S + ++ + + + L + + S
Sbjct: 194 YTYEKLLWTTSR---VLKVLSVCSSNKP--AIVEAGGMQAL-GLHLTDPS---------- 237
Query: 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIME 413
++ L L+ +++ L L +L+ + + +
Sbjct: 238 ---QRLVQNCLWT--LRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289
Query: 414 ITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVI-NDLDSPTLQIPAIKSIGSLARTFPA 472
+T +N + + ++ L+R + D + PAI ++ L
Sbjct: 290 LTC---NNYKNKMMVCQVG------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQE 340
Query: 473 --------RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524
R + +V L + +A + L + + LC + + E A+
Sbjct: 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA----LCPANHAPLREQGAI 396
Query: 525 PPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEALYHL 578
P L++LL Q R + E+ E + AL+ L
Sbjct: 397 PRLVQLLV-------RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 443
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 92.3 bits (229), Expect = 8e-20
Identities = 52/356 (14%), Positives = 111/356 (31%), Gaps = 54/356 (15%)
Query: 187 NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG-VPTI 245
N ++ + +P L KLL + AA ++ ++ + I+ V I
Sbjct: 4 NYQDDAE-LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61
Query: 246 VNVLSDSI-MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANS 304
V + ++ ++ A + ++ H + I LV +L P +
Sbjct: 62 VRTMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLG------SPVDSV 114
Query: 305 GKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKI 363
+I T+ + E V + + + +K
Sbjct: 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKM-VALLNKTN---------------VKFLA 158
Query: 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNAD 423
+ L +LA G+ + I + G L + ++ ++ T+
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNI-------MRTYTYEKLLWTTSRVLKV-- 209
Query: 424 LRRAAFKTNSPAAKAVVDQ-----LLRVINDLDSPTLQIPAIKSIGSLARTFPARETR-- 476
S A+V+ L + D S L + ++ +L+ +E
Sbjct: 210 -----LSVCSSNKPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQEGMEG 263
Query: 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532
++G LV L + V T AA L ++ + + + L+R +
Sbjct: 264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALVRTVL 315
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 4e-15
Identities = 66/429 (15%), Positives = 115/429 (26%), Gaps = 106/429 (24%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSE-AQSAAATALYNIA---- 227
AA L++L +N +NK ++ + GG+ L++ + E A AL ++
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339
Query: 228 NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287
+ + G+P +V +L I+ + R + I L
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 399
Query: 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNR 347
V LL R + G + + E
Sbjct: 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE---------------------------- 431
Query: 348 KDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNC 407
+ C AL +LAR V N I + +L+ +Q
Sbjct: 432 -------------IVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 477
Query: 408 LMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467
+ E+ E AI++ G
Sbjct: 478 AGVLCELAQDKE------------------------------------AAEAIEAEG--- 498
Query: 468 RTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPL 527
PL L RN+ VAT AA L + + + + + +V
Sbjct: 499 ---------ATAPLTELLHSRNEGVATYAAAVLFR-------MSEDKPQDYKKRLSVELT 542
Query: 528 MRLLR----GNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHA 583
L R + T GL + D + + H + + + +
Sbjct: 543 SSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMDPMMEHEM 602
Query: 584 GVHPQRQAY 592
G H Y
Sbjct: 603 GGHHPGADY 611
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 2e-14
Identities = 47/352 (13%), Positives = 105/352 (29%), Gaps = 46/352 (13%)
Query: 225 NIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVI 284
N+ N Q+ ++ +P + +L+D V + A +V ++++ +A ++
Sbjct: 1 NLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 58
Query: 285 RPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSG 344
+V + V+ R + T+ ++ E + P L + S
Sbjct: 59 SAIVRTMQNTNDVETARC-----TAGTLHNLSHHREGLLAIFKSGGIPAL-VKMLGSPV- 111
Query: 345 QNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQ 404
+ L L + GL + L+ K +
Sbjct: 112 --------------DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 157
Query: 405 FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIG 464
+ + A N + + + L+ ++ L + +
Sbjct: 158 AITTDCLQIL---AYGNQESKLIILASG------GPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 465 SLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIE 520
L+ + E + L HL+ +Q + L+ L +K
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN-------LSDAATKQEGM 261
Query: 521 FNAVPPLMRLLR-GNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELV 571
+ L++LL + A LT ++ +V Q ++ LV
Sbjct: 262 EGLLGTLVQLLGSDDINVVTC--AAGILSNLTCNNYKNKMMVCQVGGIEALV 311
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 5e-11
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 4/150 (2%)
Query: 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEA 215
S + ++ ++ + +E + + N+ +I +P ++LL +
Sbjct: 415 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENI 473
Query: 216 QSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ 275
Q AA L +A D+E I +E + +L V A+++ RM+E
Sbjct: 474 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK---P 530
Query: 276 DDFARENVIRPLVTLLSFETFVDDPRANSG 305
D+ + + +L E + A+ G
Sbjct: 531 QDYKKRLSVELTSSLFRTEPMAWNETADLG 560
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 7e-08
Identities = 31/221 (14%), Positives = 72/221 (32%), Gaps = 32/221 (14%)
Query: 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ-GELQFNCLMTIMEITAAA 418
+ A + L++ + + + + + + ++ E T+ ++
Sbjct: 29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS--- 85
Query: 419 ESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA-----R 473
+ + A FK+ + L++++ ++ AI ++ +L R
Sbjct: 86 -HHREGLLAIFKSG------GIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVR 137
Query: 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533
+ +VA L+ N + LQ A + E I+ L+ ++R
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILA----YGNQESKLIILASGGPQALVNIMRT 193
Query: 534 NDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEA 574
+L +RVL L + K + EA
Sbjct: 194 YTYEKLLWTT---SRVLKVL--------SVCSSNKPAIVEA 223
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 5/99 (5%)
Query: 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533
TR I L L+ +Q V +AA+ + + + E + V ++R ++
Sbjct: 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA----SRHAIMRSPQMVSAIVRTMQN 67
Query: 534 NDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVS 572
+ + L + + + + LV
Sbjct: 68 TNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVK 105
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 66/406 (16%), Positives = 138/406 (33%), Gaps = 43/406 (10%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+AA+ + L+K I+ V +++ ++ T E A L+N+++ +E
Sbjct: 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+ I G+P +V +L + V + + + H A+ ++ +V LL+
Sbjct: 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153
Query: 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDREN 352
A + + + N+E K + S + + +
Sbjct: 154 KTN--VKFLAITTD-CLQILAYGNQES-KLIILASGGPQALVNIMRTYTYEK-------- 201
Query: 353 EKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIM 412
L + L +L+ S +N I E G+ L + L NCL T+
Sbjct: 202 --------LLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472
++ AA + ++ L++++ D + A + +L
Sbjct: 253 NLSDAAT------------KQEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYK 299
Query: 473 R-----ETRVIGPLVAHL--SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVP 525
+ I LV + + +++ A AL+ S + A+ +P
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS-RHQEAEMAQNAVRLHYGLP 358
Query: 526 PLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELV 571
+++LL L A AL A+ + + + LV
Sbjct: 359 VVVKLLHPPSHWPLI-KATVGLIRNLALCPANHAPLREQGAIPRLV 403
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 63/415 (15%), Positives = 134/415 (32%), Gaps = 58/415 (13%)
Query: 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234
A L +L+ + I + GG+P L+K+L + A T L+N+ QE +
Sbjct: 79 CTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 235 VIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293
+ V G + +V +L+ + +K + +A + ++ + LV ++
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR- 195
Query: 294 ETFVDDPRANSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDREN 352
+ ++++ N + L + + S
Sbjct: 196 -----TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL-GLHLTDPS--------- 240
Query: 353 EKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIM 412
+L C L L+ +++ L L +L+ + + +
Sbjct: 241 ------QRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS 291
Query: 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVI-NDLDSPTLQIPAIKSIGSLARTFP 471
+T +N + + ++ L+R + D + PAI ++ L
Sbjct: 292 NLTC---NNYKNKMMVCQVG------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342
Query: 472 ARET--------RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523
E + +V L + +A + L + + LC + + E A
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA----LCPANHAPLREQGA 398
Query: 524 VPPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEALYHL 578
+P L++LL Q R + E+ E + AL+ L
Sbjct: 399 IPRLVQLLV-------RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 6e-22
Identities = 60/450 (13%), Positives = 147/450 (32%), Gaps = 83/450 (18%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
A L +L + K + GG+ ++ LL +T + + + L +A +QE
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQE 176
Query: 232 RVRVIVSELGVPTIVNVL-SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL 290
+I++ G +VN++ + + K+ + ++ ++ + + ++ L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLH 235
Query: 291 LSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350
L+ DP + + T+ + S + ++
Sbjct: 236 LT------DPSQRLVQNCLWTLRNL-------------------------SDAATKQEGM 264
Query: 351 ENEKPEV-------KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK--EQG 401
E + I + A L L + N + + G+ L + V + ++
Sbjct: 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIK 461
++ + + +T+ + + A + ++++++ L +
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHY------GLPVVVKLLHPPSHWPLIKATVG 378
Query: 462 SIGSLAR----TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE---------- 507
I +LA P RE I LV L +Q+ ++ + E
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438
Query: 508 ------NFLCTEHSKAII-EFNAVPPLMRLLR-GNDRTQLHGLAL-------EQARVLTA 552
H++ +I N +P ++LL + Q + ++A
Sbjct: 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 498
Query: 553 LEGADRTVVA----QHPELKELVSEALYHL 578
EGA + ++ + + L+ +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-18
Identities = 51/359 (14%), Positives = 113/359 (31%), Gaps = 48/359 (13%)
Query: 180 LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239
+ +L D + +P L KLL + AA ++ ++ + I+
Sbjct: 2 VVNLINYQD---DAELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 240 LG-VPTIVNVL-SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFV 297
V IV + + + ++ A + ++ H + I LV +L
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLG----- 111
Query: 298 DDPRANSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356
P + +I T+ + E V + + +
Sbjct: 112 -SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM-VALLNKTN------------- 156
Query: 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEIT 415
+K + L +LA G+ + I + G L ++ +L + + ++
Sbjct: 157 --VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214
Query: 416 AAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET 475
+ + + A + L + D S L + ++ +L+ +E
Sbjct: 215 VCSSNKPAIVEA----------GGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQEG 263
Query: 476 R--VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532
++G LV L + V T AA L ++ + + + L+R +
Sbjct: 264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY----KNKMMVCQVGGIEALVRTVL 318
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 50/389 (12%), Positives = 113/389 (29%), Gaps = 58/389 (14%)
Query: 222 ALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE 281
A+ N+ N Q+ ++ +P + +L+D V + A +V ++++ +A
Sbjct: 1 AVVNLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 282 NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSS 341
++ +V + V+ R + T+ ++ E + P L + S
Sbjct: 59 QMVSAIVRTMQNTNDVETARC-----TAGTLHNLSHHREGLLAIFKSGGIPAL-VKMLGS 112
Query: 342 RSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQG 401
+ L L + GL + L+ K
Sbjct: 113 PV---------------DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157
Query: 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIK 461
+ + + A N + + + L+ ++ L +
Sbjct: 158 KFLAITTDCLQIL---AYGNQESKLIILASG------GPQALVNIMRTYTYEKLLWTTSR 208
Query: 462 SIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKA 517
+ L+ + E + L HL+ +Q + L+ L +K
Sbjct: 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN-------LSDAATKQ 261
Query: 518 IIEFNAVPPLMRLLR-GNDRTQLHGLAL--------EQARVLTALEGADRTVVA------ 562
+ L++LL + + + +++ G +V
Sbjct: 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321
Query: 563 QHPELKELVSEALYHLNLYHAGVHPQRQA 591
++ E AL HL H + A
Sbjct: 322 DREDITEPAICALRHLTSRHQEAEMAQNA 350
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 156 SWVWSYIAAIQMGQLSDRIEAAIE-LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSE 214
S + ++ ++ + +E L LA+D N+ +I +P ++LL +
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLL-YSPIEN 475
Query: 215 AQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMA 268
Q AA L +A D+E I +E + +L V A+++ RM+
Sbjct: 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 112 bits (280), Expect = 5e-26
Identities = 73/454 (16%), Positives = 152/454 (33%), Gaps = 80/454 (17%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+AA+ + L+K I+ V +++ ++ T E + L+N+++ +E
Sbjct: 167 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+ I G+P +VN+L + V + + + H A+ ++ +V LL+
Sbjct: 227 LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286
Query: 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRP---YLYSEYCSSRSGQNRKD 349
A + + + N+E K + S + + +
Sbjct: 287 KTN--VKFLAITTD-CLQILAYGNQES-KLIILASGGPQALVNIMRT------------- 329
Query: 350 RENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLM 409
+ L L +L+ S +N I E G+ L + L NCL
Sbjct: 330 -----YTYEKLLWTTSR-VLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 382
Query: 410 TIMEITAAAE------------------SNADLRRAA------FKTNSPAAKA------V 439
T+ ++ AA + ++ A N+ K
Sbjct: 383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 442
Query: 440 VDQLLRVI-NDLDSPTLQIPAIKSIGSLARTFP--------ARETRVIGPLVAHLSHRNQ 490
++ L+R + D + PAI ++ L R + +V L +
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502
Query: 491 EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDRTQLHGLA------ 543
+A + L + + LC + + E A+P L++LL + TQ
Sbjct: 503 WPLIKATVGLIRNLA----LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 558
Query: 544 -LEQARVLTALEGADRT--VVAQHPELKELVSEA 574
+E R+ +E ++A+ + ++
Sbjct: 559 FVEGVRMEEIVEACTGALHILARDIHNRIVIRGL 592
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 65/428 (15%), Positives = 140/428 (32%), Gaps = 71/428 (16%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
A L +L + K + GG+ ++ LL +T + + + L +A +QE
Sbjct: 251 LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQE 309
Query: 232 RVRVIVSELGVPTIVNVL-SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTL 290
+I++ G +VN++ + + K+ + ++ ++ + ++ L
Sbjct: 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLH 368
Query: 291 LSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350
L+ DP + + T+ ++ K G + L + S
Sbjct: 369 LT------DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLV-QLLGSDD------- 412
Query: 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK--EQGELQFNCL 408
I + A L L + N + + G+ L + V + ++ ++ +
Sbjct: 413 --------INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464
Query: 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468
+ +T+ + + A + ++++++ L + I +LA
Sbjct: 465 CALRHLTSRHQDAEMAQNAVRLHY------GLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518
Query: 469 ----TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE----------------N 508
P RE I LV L +Q+ ++ + E
Sbjct: 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHI 578
Query: 509 FLCTEHSK-AIIEFNAVPPLMRLLR-GNDRTQLHGLALEQARVLTALEGADRTVVAQHPE 566
H++ I N +P ++LL + Q A VL L AQ E
Sbjct: 579 LARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA-----AGVLCEL--------AQDKE 625
Query: 567 LKELVSEA 574
E +
Sbjct: 626 AAEAIEAE 633
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 61/400 (15%), Positives = 114/400 (28%), Gaps = 53/400 (13%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+A + + L LA N +K II+ GG L+ +++ + +
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 222 ALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE 281
L ++ IV G+ + L+D ++ + +++ A E
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA---ATKQEGME 398
Query: 282 NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCS 340
++ LV LL N + + + KN V L
Sbjct: 399 GLLGTLVQLLG------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 452
Query: 341 SRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANS---RRISETKGLLCLAKLVE 397
+ ++ ++ AL L + GL + KL+
Sbjct: 453 A----------GDREDITEP----AICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH 498
Query: 398 KEQGELQFNCLMTIMEITAAAESNAD--------------LRRAAFKTNSPAAKAVVDQL 443
+ ++ A +N L RA T +
Sbjct: 499 PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG--TQ 556
Query: 444 LRVINDLDSPTLQIPAIKSIGSLARTFPARET----RVIGPLVAHLSHRNQEVATEAAIA 499
+ + + + ++ LAR R I V L + + AA
Sbjct: 557 QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616
Query: 500 LQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDRTQ 538
L + A + E ++AI A PL LL N+
Sbjct: 617 LCELAQDK-----EAAEAIEAEGATAPLTELLHSRNEGVA 651
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 7e-20
Identities = 50/364 (13%), Positives = 114/364 (31%), Gaps = 44/364 (12%)
Query: 175 EAAIELASLAKD-NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233
E + L + + + +P L KLL + + AA ++ ++ +
Sbjct: 126 EPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASR 184
Query: 234 RVIVSELG-VPTIVNVL-SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
I+ V IV + + + ++ + + ++ H + I LV +L
Sbjct: 185 HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNML 243
Query: 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDR 350
P + +I T+ + E V + + +
Sbjct: 244 G------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM-VALLNKTN------- 289
Query: 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMT 410
+K + L +LA G+ + I + G L ++ E
Sbjct: 290 --------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 411 IMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR-- 468
++++ + + + A + + L + D S L + ++ +L+
Sbjct: 342 VLKVLS---VCSSNKPAIVEAG------GMQALGLHLTD-PSQRLVQNCLWTLRNLSDAA 391
Query: 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLM 528
T ++G LV L + V T AA L ++ + + + L+
Sbjct: 392 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN----YKNKMMVCQVGGIEALV 447
Query: 529 RLLR 532
R +
Sbjct: 448 RTVL 451
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 9e-19
Identities = 55/410 (13%), Positives = 119/410 (29%), Gaps = 57/410 (13%)
Query: 194 IVEEGGVPPLLKLLKETAS-----SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNV 248
++EG P + + +E A+ N+ N Q+ ++ +P + +
Sbjct: 101 TLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKL 158
Query: 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308
L+D V + A +V ++++ +A ++ +V + V+ R +
Sbjct: 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC-----T 213
Query: 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEA 368
T+ ++ E + P L S +
Sbjct: 214 SGTLHNLSHHREGLLAIFKSGGIPAL-VNMLGSPV---------------DSVLFHAITT 257
Query: 369 LWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAA 428
L L + GL + L+ K + + + A N + +
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL---AYGNQESKLII 314
Query: 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAH 484
+ L+ ++ L + + L+ + E + L H
Sbjct: 315 LASG------GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 368
Query: 485 LSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDRTQLHGLA 543
L+ +Q + L+ L +K + L++LL + A
Sbjct: 369 LTDPSQRLVQNCLWTLRN-------LSDAATKQEGMEGLLGTLVQLLGSDDINVVTC--A 419
Query: 544 LEQARVLTALEGADRTVVAQHPELKELVSEALYHLNLYHAGVHPQRQAYA 593
LT ++ +V Q ++ LV + AG A
Sbjct: 420 AGILSNLTCNNYKNKMMVCQVGGIEALVR------TVLRAGDREDITEPA 463
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 88.9 bits (220), Expect = 1e-18
Identities = 57/389 (14%), Positives = 116/389 (29%), Gaps = 50/389 (12%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+ ++ + + + NK IVE GG+ L L S
Sbjct: 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLW 382
Query: 222 ALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARE 281
L N+++ + + E + T+V +L + V A +++ + ++ + +
Sbjct: 383 TLRNLSDAATKQEGM--EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 440
Query: 282 NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI-----NKEMEKNSFVGSKNYRPYLYS 336
I LV + R + + +I + + + EM +N+ +
Sbjct: 441 GGIEALVRTVLRAG----DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL 496
Query: 337 EYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396
+ S I L AN + E + L +L+
Sbjct: 497 LHPPSH-----------------WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 539
Query: 397 EKEQGELQFNCLMTIMEITAAAE-SNADLRRAAFKT-----NSPAAKA------VVDQLL 444
+ + Q M + ++ A + + +
Sbjct: 540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV 599
Query: 445 RVINDLDSPTLQIPAIKSIGSLARTFPARET----RVIGPLVAHLSHRNQEVATEAAIAL 500
+++ +Q A + LA+ A E PL L RN+ VAT AA L
Sbjct: 600 QLLYS-PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
Query: 501 QKFASPENFLCTEHSKAIIEFNAVPPLMR 529
+ + + + K + L R
Sbjct: 659 FRMSEDKP----QDYKKRLSVELTSSLFR 683
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 6e-12
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 156 SWVWSYIAAIQMGQLSDRIEAAIE-LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSE 214
S + ++ ++ + +EA L LA+D N+ +I +P ++LL +
Sbjct: 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-NRIVIRGLNTIPLFVQLL-YSPIEN 608
Query: 215 AQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA 274
Q AA L +A D+E I +E + +L V A+++ RM+E
Sbjct: 609 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED---- 664
Query: 275 QDDFARENVIRPLVTLLS 292
+ ++ + L + L
Sbjct: 665 KPQDYKKRLSVELTSSLF 682
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 47/424 (11%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAK--DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAA 219
I I ++ A + L N ++I G V ++ LK + Q +
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFES 85
Query: 220 ATALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDF 278
A L NIA + + R+++ VP + +LS VQ Q + +A + +D
Sbjct: 86 AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYV 145
Query: 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK-EMEKNSFVGSKNYRPYLYSE 337
N++ PL+ L S + + R ++ + + + + F L
Sbjct: 146 LDCNILPPLLQLFSKQNRLTMTRN-----AVWALSNLCRGKSPPPEFAKVSPCLNVL--- 197
Query: 338 YCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397
+V AL L+ G + + + L +L+
Sbjct: 198 ---------SWLLFVSDTDV----LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244
Query: 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQI 457
++ L + I + + + + LL +++ +++
Sbjct: 245 HNDYKVVSPALRAVGNI---VTGDDIQTQVILNCS------ALQSLLHLLSS-PKESIKK 294
Query: 458 PAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCT 512
A +I ++ A+ + + L++ L EAA A+ S +
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS---A 351
Query: 513 EHSKAIIEFNAVPPLMRLLRGND-RTQLHGL-ALEQARVLTALEGADRTVVAQHPELKEL 570
E K ++E + PL LL D + L LE +L E + L
Sbjct: 352 EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLEN--ILRLGEQEAKRNGTGINPYCAL 409
Query: 571 VSEA 574
+ EA
Sbjct: 410 IEEA 413
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 3e-18
Identities = 46/366 (12%), Positives = 117/366 (31%), Gaps = 46/366 (12%)
Query: 181 ASLAKDN--DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA---NDQERVRV 235
++ N ++ +++++ + S E Q +A + + V
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEV 59
Query: 236 IVSELGVPTIVNVLSDSI-MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294
I + V V L +Q + A ++ +A ++L + + + LLS
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS-- 117
Query: 295 TFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEK 354
+ +Q++ + I + S R Y+ +
Sbjct: 118 ----SEFEDVQEQAVWALGNIAGD--------STMCRDYVLDC------NILPPLLQLFS 159
Query: 355 PEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEI 414
+ ++ + AL L RG + L L+ L+ ++ + + +
Sbjct: 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL 219
Query: 415 TAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR- 473
+ A V +L+ ++ + + PA++++G++ +
Sbjct: 220 SDGPNDKIQAVIDA---------GVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQT 269
Query: 474 ----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMR 529
+ L+ LS + + EA + + + +I+ N P L+
Sbjct: 270 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR----AQIQTVIDANIFPALIS 325
Query: 530 LLRGND 535
+L+ +
Sbjct: 326 ILQTAE 331
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 8e-16
Identities = 49/353 (13%), Positives = 106/353 (30%), Gaps = 49/353 (13%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
+ +A L ++A D+ + +++ +PPLL+L + A AL N+
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
+ + +L S V ++ +++ V R LV LL
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243
Query: 292 -SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350
+ V P +++ IV + + + + + L S
Sbjct: 244 MHNDYKVVSPAL----RAVGNIVTGDDIQTQ--VILNCSALQSLLHLLSSP--------- 288
Query: 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMT 410
K +K + + G+ A + + + L +++ + +
Sbjct: 289 -------KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341
Query: 411 IMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470
I T S + + K + D L + + A+ + ++ R
Sbjct: 342 ITNAT----SGGSAEQIKYLVELGCIKPLCDLL-----TVMDSKIVQVALNGLENILRLG 392
Query: 471 PARETRVIG----------------PLVAHLSHRNQEVATEAAIALQKFASPE 507
R + SH NQE+ +A ++ + E
Sbjct: 393 EQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 19/179 (10%)
Query: 368 ALWMLARGSVANSRRISETKGLLC-LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426
A+ + N+ ++ + + +++ + E Q + ++ + E N +
Sbjct: 2 AMGFHE--AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKL-LSKEPNPPIDE 58
Query: 427 AAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV-----IGPL 481
VV + + + ++ TLQ + + ++A + V +
Sbjct: 59 VISTPG------VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF 112
Query: 482 VAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLH 540
+ LS ++V +A AL A T +++ N +PPL++L +R +
Sbjct: 113 IELLSSEFEDVQEQAVWALGNIAG----DSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 2e-22
Identities = 59/381 (15%), Positives = 117/381 (30%), Gaps = 36/381 (9%)
Query: 162 IAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAA 220
+ I L +++A L ++ I+ G +P + L +T S Q +A
Sbjct: 63 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESA 122
Query: 221 TALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279
AL NIA E+ + +V +P +++L+ + Q + +A + +D
Sbjct: 123 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVI 182
Query: 280 RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYC 339
+ I PL+ LL+ + + + P L
Sbjct: 183 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL-VRLL 241
Query: 340 SSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399
++ A+ L G + + + L KL+
Sbjct: 242 HHND---------------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 286
Query: 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPA 459
+ + L I I + A + ++ + +Q A
Sbjct: 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDA---------GALAVFPSLLTN-PKTNIQKEA 336
Query: 460 IKSIGSLARTFPA-----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEH 514
++ ++ ++ LV LS + + EAA A+ + S E
Sbjct: 337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---VEQ 393
Query: 515 SKAIIEFNAVPPLMRLLRGND 535
++ + PLM LL D
Sbjct: 394 IVYLVHCGIIEPLMNLLSAKD 414
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 3e-14
Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 28/257 (10%)
Query: 176 AAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVR 234
L++L ++ + + E +P L++LL E + + A+ + ER+
Sbjct: 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIE 268
Query: 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE 294
++V + VP +V +L + + + + + + +LL+
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-- 326
Query: 295 TFVDDPRANSGKQSIHTIVQI--NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDREN 352
+P+ N K++ T+ I ++ + V + +
Sbjct: 327 ----NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD----------- 371
Query: 353 EKPEVKIKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTI 411
K + A A+ G+V + + L L+ + ++ L I
Sbjct: 372 ------FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 425
Query: 412 MEITAAAESNADLRRAA 428
I AAE + + +
Sbjct: 426 SNIFQAAEKLGETEKLS 442
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 6e-10
Identities = 47/353 (13%), Positives = 96/353 (27%), Gaps = 36/353 (10%)
Query: 189 RNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNV 248
+ ++ G+ E T + A V IV
Sbjct: 7 HSSGLVPRGSGMKETAAAKFE-RQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKG 65
Query: 249 LSDSIMKVQIQVASLVARMAEHDA-LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQ 307
++ + ++ Q+Q ++ + D+ R +I V+ L ++
Sbjct: 66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAW-- 123
Query: 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAE 367
++ I E K V P S S +
Sbjct: 124 ALTNIASGTSEQTKA--VVDGGAIPAFISLLASP----------------HAHISEQAVW 165
Query: 368 ALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRA 427
AL +A A + + + L L+ + + T +
Sbjct: 166 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225
Query: 428 AFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLV 482
+ L+R+++ D P + + +I L R + V+ LV
Sbjct: 226 PLDAVEQI----LPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 483 AHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535
L + T A A+ + + E ++ +I+ A+ LL
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGALAVFPSLLTNPK 329
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 27/180 (15%)
Query: 378 ANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437
S + + + + K + E Q R+ + P
Sbjct: 48 IGSNQGTVNWSVEDIVKGINSNNLESQLQATQA-------------ARKLLSREKQPPID 94
Query: 438 AVVD-----QLLRVINDLDSPTLQIPAIKSIGSLA-----RTFPARETRVIGPLVAHLSH 487
++ + + + D +Q + ++ ++A +T + I ++ L+
Sbjct: 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS 154
Query: 488 RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQA 547
+ ++ +A AL A + +I+ A+ PL+ LL D + L L
Sbjct: 155 PHAHISEQAVWALGNIAGD----GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533
+ +V ++ N E +A A +K S E II +P + L
Sbjct: 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREK---QPPIDNIIRAGLIPKFVSFLGK 111
Query: 534 NDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVS 572
D + + + + + V + +S
Sbjct: 112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 4e-20
Identities = 73/505 (14%), Positives = 164/505 (32%), Gaps = 85/505 (16%)
Query: 88 VRKCKRQSVLRRVVTIVSAADFRKLLNLLDASVGDMRWLLSIFDSENGGASGGIVLTLPP 147
+RK KR L + R+ S ++ S + LP
Sbjct: 43 LRKAKRDEALAK----------RRNFIPPTDGADSDEEDESSVSADQQFYSQ-LQQELPQ 91
Query: 148 IASNDPMLSWVWSYIAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKL 206
+ + + +++ A ++ + +++ ++++ G VP L++
Sbjct: 92 M-------------TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF 138
Query: 207 LKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVA 265
++E Q AA AL NIA + +V+V VP + +L ++V+ Q +
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALG 198
Query: 266 RMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFV 325
+A +D + N + P++ L + + + + + T+ +
Sbjct: 199 NVAGDSTDYRDYVLQCNAMEPILGLFNS------NKPSLIRTATWTLSNL---------- 242
Query: 326 GSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI----------KLKIACAEALWMLARG 375
R + + D + + + A+ L+ G
Sbjct: 243 ---------------CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287
Query: 376 SVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPA 435
+ + + + L +L+ E +Q L + I + +
Sbjct: 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQV----------V 337
Query: 436 AKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQ 490
A V LR++ ++ A +I ++ + + +I PLV L
Sbjct: 338 INAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397
Query: 491 EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQ-ARV 549
+ EA A+ +S + + ++ + PL LL D ++ + L+ +
Sbjct: 398 KTKKEACWAISNASSGGL-QRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEVTLDALENI 455
Query: 550 LTALEGADRTVVAQHPELKELVSEA 574
L E E + + +A
Sbjct: 456 LKMGEADKEARGLNINENADFIEKA 480
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 90.1 bits (223), Expect = 3e-19
Identities = 40/354 (11%), Positives = 111/354 (31%), Gaps = 48/354 (13%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
+ +A L ++A D+ + +++ + P+L L A L N+ +
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKP 248
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
+ V +PT+ ++ + + ++ +++ A + + LV LL
Sbjct: 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 308
Query: 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNS-FVGSKNYRPYLYSEYCSSRSGQNRKDR 350
S ++ + I + + V + P L S
Sbjct: 309 S------HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--------- 353
Query: 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMT 410
K +K + + G+ + + + + L KL+E + + +
Sbjct: 354 -------KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA 406
Query: 411 IMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470
I ++ D+ R + L ++ D+ +++ + ++ ++ +
Sbjct: 407 ISNASSGGLQRPDIIRYLVSQG------CIKPLCDLLEIADNRIIEV-TLDALENILKMG 459
Query: 471 PAR----------------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508
A + + + + N ++ +A ++ + E
Sbjct: 460 EADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 8e-15
Identities = 56/380 (14%), Positives = 118/380 (31%), Gaps = 56/380 (14%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
++EAA L ++A K++V+ VP ++LL S E + A AL N+A D
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTD 206
Query: 233 VRVIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
R V + + I+ + + + + ++ + D + L L+
Sbjct: 207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 292 SFETFVDDPRANS----GKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNR 347
+ ++ S I ++ L E S S
Sbjct: 267 YSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIP-------KRLV-ELLSHEST--- 313
Query: 348 KDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNC 407
++ A+ + G+ ++ + L L L+ + ++
Sbjct: 314 ------------LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
Query: 408 LMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467
TI ITA N + +A N ++ L++++ + A +I + +
Sbjct: 362 CWTISNITA---GNTEQIQAVIDAN------LIPPLVKLLEV-AEYKTKKEACWAISNAS 411
Query: 468 RTFPARETRV--------IGPLVAHLSHRNQEVATEAAIALQKFAS-------PENFLCT 512
R + I PL L + + AL+
Sbjct: 412 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN 471
Query: 513 EHSKAIIEFNAVPPLMRLLR 532
E++ I + + + +
Sbjct: 472 ENADFIEKAGGMEKIFNCQQ 491
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 91.2 bits (225), Expect = 2e-19
Identities = 70/427 (16%), Positives = 145/427 (33%), Gaps = 50/427 (11%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
IA + + + AA L L ND+ K + + G+P L+ LL E A
Sbjct: 54 IAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACG 112
Query: 222 ALYNIA--NDQERVRVIVSELGVPTIVNVLSDSI-MKVQIQVASLVARMAEHDALAQDDF 278
AL NI+ DQ+ I + GVP +V +L + M + + + ++ HD++ +
Sbjct: 113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME-- 170
Query: 279 ARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEY 338
++ + L + + N + H +
Sbjct: 171 IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGC------------LRN 218
Query: 339 CSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET--KGLLCLAKLV 396
SS + R+ V +AL + + + S+ + L L
Sbjct: 219 VSSERSEARRKLRECDGLV---------DALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269
Query: 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ 456
+ E+ A +N A VV + ++ + +P +
Sbjct: 270 YQVHREIPQAERYQEA---APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326
Query: 457 IPAIKSIGSLARTFPA---------RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE 507
+ +I +L R+ + + + L++ ++ V A+ AL
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL------R 380
Query: 508 NFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPEL 567
N +K +I +A+P L++ L G + + + + ++ V+A++ E
Sbjct: 381 NLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSED---TVISILNTINEVIAENLEA 437
Query: 568 KELVSEA 574
+ + E
Sbjct: 438 AKKLRET 444
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 69.6 bits (169), Expect = 1e-12
Identities = 48/379 (12%), Positives = 116/379 (30%), Gaps = 37/379 (9%)
Query: 173 RIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE 231
+ A L +++ + NK I GVP L++LL++ + L+N+++
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
IV + + + + + + + A V+
Sbjct: 167 IKMEIVDH-ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG---CLRNVSSE 222
Query: 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRE 351
E + ++ IVQ + + +N L +N +
Sbjct: 223 RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL----------RNLSYQV 272
Query: 352 NEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-EQGELQFNCLMT 410
+ + + + A + + + + L+++ + +
Sbjct: 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA 332
Query: 411 IMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470
I + A + R+A + A A+ D L + + A ++ +LA
Sbjct: 333 IQNLCAGRWTYGRYIRSALRQEK-ALSAIADLL-----TNEHERVVKAASGALRNLAVDA 386
Query: 471 PARETR---VIGPLVAHLSHRNQ--------EVATEAAIALQKFASPENFLCTEHSKAII 519
+E I LV +L Q + + + + E +K +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL----EAAKKLR 442
Query: 520 EFNAVPPLMRLLRGNDRTQ 538
E + L+ + + +R++
Sbjct: 443 ETQGIEKLVLINKSGNRSE 461
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 1e-05
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 176 AAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIANDQERVR 234
+ + +N K + E G+ L+ + K S + AAA L I +E +
Sbjct: 423 ILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRK 482
Query: 235 VIVSE 239
+ E
Sbjct: 483 PLEKE 487
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 2e-04
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 19/136 (13%)
Query: 458 PAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKA 517
++ S+ P + ++A L R V + AA LQ + +
Sbjct: 30 ASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND----KVKTD 85
Query: 518 IIEFNAVPPLMRLLR-GNDRTQ------LHGLAL---EQARVLTALEGADRTVVAQ---- 563
+ + +P L+ LL L ++ + ++ +V
Sbjct: 86 VRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA 145
Query: 564 -HPELKELVSEALYHL 578
+L E+++ L++L
Sbjct: 146 RDMDLTEVITGTLWNL 161
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 7e-19
Identities = 24/136 (17%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+ + +++ A + + + D + + +++ G +P L++LL + + A
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALW 76
Query: 222 ALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280
AL NIA E+++ ++ +P +V +LS ++ + ++ +A
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 281 ENVIRPLVTLLSFETF 296
+ LV LLS
Sbjct: 137 AGALPALVQLLSSPNE 152
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERV 233
EA L+++A + + +++ G +P L++LL + + A AL NIA E++
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQI 173
Query: 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293
+ ++ +P +V +LS ++ + ++ +A + + L L S
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233
Query: 294 ET 295
E
Sbjct: 234 EN 235
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
EA L+++A + + +++ G +P L++LL + + A AL NIA+
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 129
Query: 233 VRVIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
V + G +P +V +LS ++ + ++ +A + LV LL
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 292 S 292
S
Sbjct: 190 S 190
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 8e-11
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 175 EAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234
EA L+++A + + +++ G +P L++LL + + + A AL NIA+ +
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 215
Query: 235 VIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEH 270
V E G + + + S K+Q + + ++ H
Sbjct: 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 38/280 (13%), Positives = 89/280 (31%), Gaps = 35/280 (12%)
Query: 190 NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG-VPTIVNV 248
+ +P + + L + Q +A I +D V + G +P +V +
Sbjct: 4 SHHHHHHGSELPQMTQQLNSD-DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62
Query: 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308
LS ++ + ++ +A + LV LLS P +++
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEA 116
Query: 309 IHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAE 367
+ + I + V P L + ++ + A
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPALVQL------------LSSPNEQIL---QEALW- 160
Query: 368 ALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRA 427
AL +A G + + + L L +L+ ++ L + I + +
Sbjct: 161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 220
Query: 428 AFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467
A +++L ++ + ++ +Q A +++ L
Sbjct: 221 A---------GALEKLEQLQSH-ENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 20/191 (10%)
Query: 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAE 419
++ AL +A G + + + L L +L+ ++ L + I +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--- 125
Query: 420 SNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV-- 477
+ +A + L+++++ + + A+ ++ ++A + V
Sbjct: 126 GGNEQIQAVIDAG------ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 478 ---IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-G 533
+ LV LS N+++ EA AL AS E +A+ E A+ L +L
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHE 234
Query: 534 NDRTQLHGLAL 544
N++ Q
Sbjct: 235 NEKIQKEAQEA 245
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 7e-09
Identities = 37/221 (16%), Positives = 80/221 (36%), Gaps = 30/221 (13%)
Query: 359 IKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAA 418
++ +++ + + + + L L +L+ ++ L + I +
Sbjct: 26 MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85
Query: 419 ESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRV- 477
A + L+++++ + + A+ ++ ++A + V
Sbjct: 86 NEQIQAVIDA---------GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 478 ----IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533
+ LV LS N+++ EA AL AS E +A+I+ A+P L++LL
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSS 191
Query: 534 NDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEA 574
+ L AL + + E K+ V EA
Sbjct: 192 PNEQI-------LQEALWAL----SNIASGGNEQKQAVKEA 221
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227
EA L+++A + K+ + E G + L +L + + Q A AL +
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 6e-05
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR 536
+ + L+ + + A + S N E +A+I+ A+P L++LL +
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGN----EQIQAVIDAGALPALVQLLSSPNE 68
Query: 537 TQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEA 574
L AL + + E + V +A
Sbjct: 69 QI-------LQEALWAL----SNIASGGNEQIQAVIDA 95
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-17
Identities = 25/132 (18%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+ + + A +L+ +A + + +++ G +P L++LL + + A
Sbjct: 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALW 76
Query: 222 ALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280
AL NIA E+++ ++ +P +V +LS ++ + ++ +A
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 281 ENVIRPLVTLLS 292
+ LV LLS
Sbjct: 137 AGALPALVQLLS 148
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-15
Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
EA L+++A + + +++ G +P L++LL + + + A AL NIA E
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNE 129
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
+++ ++ +P +V +LS ++ + ++ +A + + L L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 292 S 292
S
Sbjct: 190 S 190
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
EA L+++A + + +++ G +P L++LL + + + A AL NIA+
Sbjct: 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNE 171
Query: 233 VRVIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEH 270
+ V E G + + + S K+Q + + ++ H
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-11
Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 25/229 (10%)
Query: 190 NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNV 248
+ +P +++ L + +A L IA E+++ ++ +P +V +
Sbjct: 4 SHHHHHHGSELPQMVQQLNSP-DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308
LS ++ + ++ +A + LV LLS P +++
Sbjct: 63 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS------SPNEQILQEA 116
Query: 309 IHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAE 367
+ + I + V P L + SS + Q ++
Sbjct: 117 LWALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQE---------------ALW 160
Query: 368 ALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITA 416
AL +A G + + E L L +L E ++Q + ++ +
Sbjct: 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 29/182 (15%), Positives = 67/182 (36%), Gaps = 19/182 (10%)
Query: 359 IKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAA 418
+ + L +A G + + + L L +L+ ++ L + I +
Sbjct: 26 QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-- 83
Query: 419 ESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR----- 473
+ +A + L+++++ + + A+ ++ ++A +
Sbjct: 84 -GGNEQIQAVIDAG------ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533
+ + LV LS N+++ EA AL AS E +A+ E A+ L +L
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSH 191
Query: 534 ND 535
+
Sbjct: 192 EN 193
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 19/163 (11%)
Query: 378 ANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437
+ L + + + + + L + +I A + +A
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQI---ASGGNEQIQAVIDAG----- 54
Query: 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLAR-----TFPARETRVIGPLVAHLSHRNQEV 492
+ L+++++ + + A+ ++ ++A + + LV LS N+++
Sbjct: 55 -ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 112
Query: 493 ATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND 535
EA AL AS E +A+I+ A+P L++LL +
Sbjct: 113 LQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPN 151
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 15/153 (9%)
Query: 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAA 417
++ AL +A G + + + L L +L+ ++ L + I +
Sbjct: 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS- 125
Query: 418 AESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----- 472
+ +A A A+V LL + + A+ ++ ++A
Sbjct: 126 --GGNEQIQAVIDAG--ALPALVQ-LLSS----PNEQILQEALWALSNIASGGNEQKQAV 176
Query: 473 RETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505
+E + L SH N+++ EA AL+K S
Sbjct: 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 81.8 bits (201), Expect = 1e-16
Identities = 41/424 (9%), Positives = 123/424 (29%), Gaps = 52/424 (12%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+ AA L +L + NK + G+ + LL+ T ++E Q L+N+++ E
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA----------LAQDDFAR-- 280
++++ +P + + + +++ + + + L+ D R
Sbjct: 121 KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179
Query: 281 ----ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYS 336
+I L+ + S + + + ++ ++ Y
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR------YRQL 233
Query: 337 EYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396
EY + + + + + L + L +
Sbjct: 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293
Query: 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ 456
+ ++ C + +TA+ + + L + +
Sbjct: 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-----QSGNSDVV 348
Query: 457 IPAIKSIGSLARTFPARETRV---IGPLVAHLSHRNQ------EVATEAAIALQKFASPE 507
+ +++R + L+ ++ + A ++ + +
Sbjct: 349 RSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408
Query: 508 NFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPEL 567
+ +K + + ++ L R + + A +L+ + EL
Sbjct: 409 P----QLAKQYFSSSMLNNIINLCRSSASPKAAEAA---RLLLSDM--------WSSKEL 453
Query: 568 KELV 571
+ ++
Sbjct: 454 QGVL 457
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 2e-16
Identities = 57/426 (13%), Positives = 121/426 (28%), Gaps = 28/426 (6%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+ + + A + ++ K+ + + GG+ L+ LL+ + Q AAA
Sbjct: 8 VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAG 66
Query: 222 ALYNIA-NDQERVRVIVSELGVPTIVNVLSDSI-MKVQIQVASLVARMAEHDALAQDDFA 279
AL N+ + G+ V++L + ++Q Q+ L+ ++ D L ++
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE--L 124
Query: 280 RENVIRPLVTLLSFETF-VDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEY 338
+ + L + D +N ++ + V N + + R + +
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184
Query: 339 CSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK 398
S K C L L+ A EK
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244
Query: 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIP 458
N +M + + + L ++
Sbjct: 245 SSTGCFSNKSDKMMNNNYDC-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303
Query: 459 AIKSIGSLA----------RTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508
++ +L + + + + L N +V A L N
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL------SN 357
Query: 509 FLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELK 568
++ P + RLL T G +L++ R ++A P+L
Sbjct: 358 MSRHPLLHRVMGNQVFPEVTRLL-----TSHTGNTSNSEDILSSACYTVRNLMASQPQLA 412
Query: 569 ELVSEA 574
+ +
Sbjct: 413 KQYFSS 418
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDR 536
I V +LS ++++ A +Q + + + + + L+ LLR N
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE----SAKQQVYQLGGICKLVDLLRSPNQN 59
Query: 537 TQ------LHGLAL--EQARVLTALEGADRTVVAQ-----HPELKELVSEALYHL 578
Q L L ++ T + R V+ + E+++ ++ L++L
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 6e-04
Identities = 23/230 (10%), Positives = 65/230 (28%), Gaps = 20/230 (8%)
Query: 359 IKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAA 418
K + A + + +++ + G+ L L+ +Q + + +
Sbjct: 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75
Query: 419 ESNADLRRAA----------FKTNSPAAKAVVDQLLRVINDLDSPTLQI--PAIKSIGSL 466
+N R +T + + + LL ++ D ++ A+ +
Sbjct: 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADR 135
Query: 467 ARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFN-AVP 525
+ + + + EV A L+ +S + + ++ +
Sbjct: 136 VIIPFSGWCDGNSNMSREVV--DPEVFFNATGCLRNLSS-----ADAGRQTMRNYSGLID 188
Query: 526 PLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEAL 575
LM ++ + + + R ++L A
Sbjct: 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 59/432 (13%), Positives = 135/432 (31%), Gaps = 79/432 (18%)
Query: 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE-----------TASS 213
+ M D+ + + L +++ + + + + G +P L++LL S
Sbjct: 38 LSMLGTHDKDDMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSK 96
Query: 214 EAQSAAATALYNIANDQERVRVIVSELGV-------------------------PTIVNV 248
EA++ A+ AL+NI + Q + E+ V N
Sbjct: 97 EARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNP 156
Query: 249 LSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308
+ + ++ +++ + + ++ + LL + + + +
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215
Query: 309 IH-------TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKL 361
+ T + K + K L S S L
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRAL-VAQLKSES---------------EDL 259
Query: 362 KIACAEALWMLA-RGSVANSRRISETKGLLCLAKLVEK-EQGELQFNCLMTIMEITAAAE 419
+ A L L+ R V + + + E + L + + ++ + L + ++A
Sbjct: 260 QQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319
Query: 420 SNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ--IPAIKSIGSLARTFPA----- 472
N +A A +V L ++ ++++ SL T
Sbjct: 320 EN----KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 375
Query: 473 RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532
RE + L+ HL + + + A L ++ + +A+ + AV L L+
Sbjct: 376 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR----NPKDQEALWDMGAVSMLKNLIH 431
Query: 533 -GNDRTQLHGLA 543
+ + A
Sbjct: 432 SKHKMIAMGSAA 443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 7e-12
Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 24/256 (9%)
Query: 173 RIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIA--ND 229
R A + L +L + NK + +G + L+ LK + S + Q A+ L N++ D
Sbjct: 217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRAD 275
Query: 230 QERVRVIVSELGVPTIVNVL-SDSIMKVQIQVASLVARMAEHDALAQDDFAREN-VIRPL 287
+ + V ++ V S + ++ H + D + + L
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335
Query: 288 VTLLSFET-FVDDPRANSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQ 345
V L++ + SG + + + E + + N L ++ S S
Sbjct: 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL-LQHLKSHS-- 392
Query: 346 NRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQF 405
+ + LW L+ + + + + + L L+ + +
Sbjct: 393 -------------LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 439
Query: 406 NCLMTIMEITAAAESN 421
+ + A +
Sbjct: 440 GSAAALRNLMANRPAK 455
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 162 IAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAA 220
+A ++ + A L +L+ + + +KK + E G V L++ E +
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308
Query: 221 TALYNIAND-QERVRVIVSELG-VPTIVNVLSDSIMKVQIQVA-------SLVARMAEHD 271
+AL+N++ E I + G + +V L+ + + V+ + +
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368
Query: 272 ALAQDDFARENVIRPLVTLLS 292
+ N ++ L+ L
Sbjct: 369 EDHRQILRENNCLQTLLQHLK 389
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 43/348 (12%), Positives = 101/348 (29%), Gaps = 48/348 (13%)
Query: 180 LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239
L + + + K A L ++ D+E +
Sbjct: 129 LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNEL 188
Query: 240 LGVPTIVNVLSDSI-----------MKVQIQVASLVARMAEHDALAQDDF-ARENVIRPL 287
G+ I +L + ++ + + D + + + +R L
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248
Query: 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNR 347
V L + + + + S+ N + L +
Sbjct: 249 VAQLK------SESEDLQQVIASVLRNL-------SWRADVNSKKTLREVGSVKALMECA 295
Query: 348 KDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL-----CLAKLVEKEQGE 402
+ + E + ALW L+ N I G L L +
Sbjct: 296 LEVKKE------STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349
Query: 403 LQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKS 462
+ + + +++ +N D R+ + N + LL+ + S T+ A +
Sbjct: 350 IIESGGGILRNVSSLIATNEDHRQILRENN------CLQTLLQHLKS-HSLTIVSNACGT 402
Query: 463 IGSLARTFPARETRV-----IGPLVAHLSHRNQEVATEAAIALQKFAS 505
+ +L+ P + + + L + +++ +A +A AL+ +
Sbjct: 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+ ++ L+ A L +L+ N ++++ + + G V L L+ + +A
Sbjct: 385 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAA 443
Query: 222 ALYNIANDQE 231
AL N+ ++
Sbjct: 444 ALRNLMANRP 453
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 2e-14
Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
R AA + + +++ ++ ++ G + LL+LL A + A A+ + +
Sbjct: 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
+ + G ++ + + K++++ A L+ + + +++ LV L+
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218
Query: 292 SFE 294
E
Sbjct: 219 RTE 221
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 5e-13
Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 3/129 (2%)
Query: 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYN 225
Q +R A LA L ++ D N + G+ L+ E ++ + AA +
Sbjct: 50 QAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108
Query: 226 IANDQERVRVIVSELGV--PTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENV 283
+ + ++ V LG + + D+ V+++ ++ + F R +
Sbjct: 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG 168
Query: 284 IRPLVTLLS 292
L+ +
Sbjct: 169 FSVLMRAMQ 177
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 3e-10
Identities = 12/112 (10%), Positives = 38/112 (33%), Gaps = 2/112 (1%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
R++A ++ L ++ + + G L++ ++ + + +A L N+
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPE 200
Query: 233 VRVIVSELG-VPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENV 283
+ + +G V +V ++ V + + + +
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL 252
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 22/231 (9%)
Query: 350 RENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGL-LCLAKLVEKEQGELQFNCL 408
+ + + E L L ++ N+ + G+ L + + +E L++
Sbjct: 45 AGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 103
Query: 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468
I +++ A ++ + +LLR+++ T+++ A+ +I L R
Sbjct: 104 QLI---GTCSQNVAAIQEQVLGLG------ALRKLLRLLDRDACDTVRVKALFAISCLVR 154
Query: 469 TFPA-----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523
A L+ + + Q++ ++A LQ EH +
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP----EHKGTLCSMGM 210
Query: 524 VPPLMRLLRGNDRTQLHGLALEQ-ARVLTALEGADRTVVAQHPELKELVSE 573
V L+ L+R + + H L ++T R L+EL+
Sbjct: 211 VQQLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH 260
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 1e-12
Identities = 51/284 (17%), Positives = 93/284 (32%), Gaps = 26/284 (9%)
Query: 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALY 224
I++ + + + ++ ++ EG L L K T S +Q A L
Sbjct: 462 IELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK-TESHNSQELIARVLN 520
Query: 225 NIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMA--EHDALAQDDFAREN 282
+ +E +V E GV ++ + + K + +AR+ + ++ +
Sbjct: 521 AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580
Query: 283 VIRPLVTLLSFETFVDDPR------ANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYS 336
VIRPL+ LL + + N + +I KE + +
Sbjct: 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640
Query: 337 EYCS------SRSGQNRKDRENEKPEVKI----------KLKIACAEALWMLARGSVANS 380
+ S K E VK + ACA AL ++ SV
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700
Query: 381 RRISETKGLL-CLAKLVEKEQGELQFNCLMTIMEITAAAESNAD 423
+I L L L+ +Q ++ I+ + A E A
Sbjct: 701 EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAK 744
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 55/452 (12%), Positives = 139/452 (30%), Gaps = 83/452 (18%)
Query: 171 SDRIEAAIE-LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND 229
D A + LA L D + +K+I ++ + L+ L + + T N+ N
Sbjct: 393 KDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR-GGNQSCLYGVVTTFVNLCNA 451
Query: 230 QE---------------------------------RVRVIVSELGVPTIVNVLSDSIMKV 256
E R+ V+ +E + +
Sbjct: 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNS 511
Query: 257 QIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316
Q +A ++ + L + +E ++ L+ + T + + ++ + + IN
Sbjct: 512 QELIARVLNAVCGLKEL-RGKVVQEGGVKALLRMALEGT--EKGKRHATQALARIGITIN 568
Query: 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS 376
E+ + RP L + + AL LA +
Sbjct: 569 PEVSFSGQRSLDVIRPLL----------------NLLQQDCTALENFESLMALTNLASMN 612
Query: 377 VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436
+ +RI + +G+ + + ++ L + + + + F+ N+
Sbjct: 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV-----IKMFEGNNDRV 667
Query: 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA------RETRVIGPLVAHLSHRNQ 490
K + + + ++ + + L +++ +
Sbjct: 668 KFLALLC-----EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP 722
Query: 491 EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLA------- 543
V + + + E +K + E + + L L + D T+
Sbjct: 723 AVQHRGIVIILNMINAGE----EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLA 778
Query: 544 -LEQARVLTALEGADR-TVVAQHPELKELVSE 573
E+ R++ + A+ V A++ ++ E++ +
Sbjct: 779 AAERYRIIERSDNAEIPDVFAENSKISEIIDD 810
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 53/427 (12%), Positives = 124/427 (29%), Gaps = 44/427 (10%)
Query: 170 LSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-N 228
+ R AA L LAK+ +++ ++ + + L K + + + N
Sbjct: 22 IDKRRAAANNLVVLAKEQT-GAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCEN 80
Query: 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLV 288
ER + +++ELGVP + VL + + +AL+ ++ +
Sbjct: 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTIL--NALSGLKNKPDSKPDKEL 138
Query: 289 TLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRK 348
+ I T++ + + S R + + +
Sbjct: 139 CT-------------RNNREIDTLLTCLVYSITDRTI-SGAARDGVIELITRNVHYTALE 184
Query: 349 DRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK---EQGELQF 405
E + + L S + S T +CLA++ E ++ + +F
Sbjct: 185 WAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244
Query: 406 NCLMTIMEITAAAESNADLRRAAFKT---------NSPAAKAVVDQLLRVINDL---DSP 453
+ + + + + + +L++I + D
Sbjct: 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE 304
Query: 454 TLQIPAIKSIGSLARTFPARE---TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL 510
Q A + + + + + + + L +N + A + L K S +
Sbjct: 305 LQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGS---YG 361
Query: 511 CTEHSKAIIEFNAVPPLMRLLRG-----NDRTQLHGLALEQARVLTALEGADRTVVAQHP 565
+ + A L R + A + LT ++
Sbjct: 362 GQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKA 421
Query: 566 ELKELVS 572
+ L+
Sbjct: 422 SIHALMD 428
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 45/373 (12%), Positives = 100/373 (26%), Gaps = 39/373 (10%)
Query: 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNI--AN 228
S A++ LA + ++ ++ + +K E++ A+ +
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGP 278
Query: 229 DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLV 288
+V+ E + I+ + + Q + + A E + L
Sbjct: 279 LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKA--KALCEQGVDILK 336
Query: 289 TLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRK 348
L + RA G + + + + ++
Sbjct: 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDG--------------AALKLAEAC 382
Query: 349 DRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCL 408
R KP ++ A+ L L + + I + + L L + +
Sbjct: 383 RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVV 442
Query: 409 MTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468
T + + A E L Q + ++LD I +
Sbjct: 443 TTFVNLCNAYEKQEMLPEMI------ELAKFAKQHIPEEHELDDVDFINKRITVL----- 491
Query: 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLM 528
+ L A + A L + E +++ V L+
Sbjct: 492 ----ANEGITTALCALAKTESHNSQELIARVLNAVCGLK-----ELRGKVVQEGGVKALL 542
Query: 529 RLLR-GNDRTQLH 540
R+ G ++ + H
Sbjct: 543 RMALEGTEKGKRH 555
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 37/266 (13%), Positives = 86/266 (32%), Gaps = 24/266 (9%)
Query: 175 EAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIA--NDQE 231
A + L +L + NK + +G + L+ LK + S + Q A+ L N++ D
Sbjct: 103 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVN 161
Query: 232 RVRVIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFAREN-VIRPLVT 289
+ + V ++ + V S + ++ H + D + + LV
Sbjct: 162 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 221
Query: 290 LLSFETFVDDPRA-NSGKQSIHTIVQINKEMEKN-SFVGSKNYRPYLYSEYCSSRSGQNR 347
L++ + + SG + + + E + + N L ++ S S
Sbjct: 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL-QHLKSHS---- 276
Query: 348 KDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNC 407
+ + LW L+ + + + + + L L+ + +
Sbjct: 277 -----------LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 325
Query: 408 LMTIMEITAAAESNADLRRAAFKTNS 433
+ + A + +S
Sbjct: 326 AAALRNLMANRPAKYKDANIMSPGSS 351
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 17/128 (13%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLK---ETASSEAQSAAATALYNI-- 226
L +L+ NK I G + L+ L +T + + L N+
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247
Query: 227 --ANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVI 284
A +++ +++ + T++ L + + + ++ + Q+ +
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAV 307
Query: 285 RPLVTLLS 292
L L+
Sbjct: 308 SMLKNLIH 315
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 162 IAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAA 220
+A ++ + A L +L+ + + +KK + E G V L++ E +
Sbjct: 133 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192
Query: 221 TALYNIANDQERVRV-IVSELG-VPTIVNVLSDSIMKVQIQVA-------SLVARMAEHD 271
+AL+N++ + I + G + +V L+ + + V+ + +
Sbjct: 193 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252
Query: 272 ALAQDDFARENVIRPLVTLLS 292
+ N ++ L+ L
Sbjct: 253 EDHRQILRENNCLQTLLQHLK 273
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 48/395 (12%), Positives = 112/395 (28%), Gaps = 94/395 (23%)
Query: 228 NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287
+ E G+ N + + ++ +++ + + ++ +
Sbjct: 20 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAI 78
Query: 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNR 347
LL + + + ++
Sbjct: 79 AELLQVDCEMYGLTNDHYSITL-------------------------------------- 100
Query: 348 KDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL-CLAKLVEKEQGELQFN 406
R A AL L G VAN + KG + L ++ E +LQ
Sbjct: 101 --RRY-----------AGM-ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 146
Query: 407 CLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQ-----LLRVINDLDSPTLQIPAIK 461
LR +++ + + K + + L+ ++ + +
Sbjct: 147 IASV-------------LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLS 193
Query: 462 SIGSLARTFP------ARETRVIGPLVAHLSHRNQEV---ATEAAIALQKFASPENFLCT 512
++ +L+ + LV L++R+Q E+ + + S
Sbjct: 194 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 253
Query: 513 EHSKAIIEFNAVPPLMRLLR-GNDRTQ------LHGLALEQARVLTAL--EGADRTVVA- 562
+H + + E N + L++ L+ + L L+ + AL GA +
Sbjct: 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313
Query: 563 ---QHPELKELVSEALYHLNLYHAGVHPQRQAYAP 594
+H + + AL +L + +P
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSP 348
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAAT 221
+ ++ L+ A L +L+ N ++++ + + G V L L+ + +A
Sbjct: 269 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH-SKHKMIAMGSAA 327
Query: 222 ALYNIAND---QERVRVIVSELG 241
AL N+ + + + I+S
Sbjct: 328 ALRNLMANRPAKYKDANIMSPGS 350
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/144 (14%), Positives = 43/144 (29%), Gaps = 30/144 (20%)
Query: 460 IKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII 519
I++ + + + + A L K + EH A+
Sbjct: 16 IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-----DEEHRHAMN 70
Query: 520 EFNAVPPLMRLLR------GNDRTQLHGLALEQA---------------RVLTALEGADR 558
E + + LL+ G A L +++G R
Sbjct: 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130
Query: 559 TVVAQ----HPELKELVSEALYHL 578
+VAQ +L+++++ L +L
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNL 154
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-11
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 171 SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ 230
S AA + +K + + G+ LL+LLK + + Q A AL N+ +
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLK-VQNEDVQRAVCGALRNLVFED 83
Query: 231 ERVRVIVSELG-VPTIVNVLSDSI-MKVQIQVASLVARMAEHDALAQDDFARENVIRPLV 288
++ V+EL VP ++ VL + ++ + Q+ L+ ++ +D L + L
Sbjct: 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL--MITEALLTLT 141
Query: 289 TLL 291
+
Sbjct: 142 ENI 144
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 5e-11
Identities = 18/78 (23%), Positives = 41/78 (52%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+ L +L +++ NK + E GVP LL++LK+T E + L+N++++ +
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128
Query: 233 VRVIVSELGVPTIVNVLS 250
++++E + N++
Sbjct: 129 KNLMITEALLTLTENIII 146
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
Query: 442 QLLRVINDLDS----PTLQIPAIKSIGSLARTFPA-----RETRVIGPLVAHLSHRNQEV 492
L R ++ L++ P+ A I + R I L+ L +N++V
Sbjct: 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68
Query: 493 ATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLTA 552
AL+ F ++ + E N VP L+++L+ + L++
Sbjct: 69 QRAVCGALRNLV----FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124
Query: 553 LEGADRTVVAQH 564
+ ++ +
Sbjct: 125 NDKLKNLMITEA 136
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 4e-08
Identities = 78/505 (15%), Positives = 136/505 (26%), Gaps = 155/505 (30%)
Query: 189 RNKKII-------VEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSEL- 240
+ K I+ V+ + + K S E + + + L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE----IDHIIMSKDAVSGTLRLFWTLL 72
Query: 241 -----GVPTIV--------NVLSDSIMKVQIQVASLVARM--AEHDALAQDD--FARENV 283
V V L I Q Q S++ RM + D L D+ FA+ NV
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 284 IRP-LVTLLSFETFVDDPRAN--------SGKQSIHTIV----QINKEMEKNSF---VGS 327
R L P N SGK + V ++ +M+ F + +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 328 KNYRPY--------LY----SEYCS-SRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR 374
N P L + S S N K R + ++ +L+ L
Sbjct: 192 CN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS---IQAELRR-----LLKSKP 242
Query: 375 GSVANSRRISETKGLLCL-----AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAF 429
LL L AK +C I+ +T + D AA
Sbjct: 243 Y----------ENCLLVLLNVQNAKAWNA----FNLSC--KIL-LTTRFKQVTDFLSAAT 285
Query: 430 KTNSPAAKA--------VVDQLLRVIN----DLDSPTLQI-P-AIKSIGSLARTFPAR-- 473
T+ V LL+ ++ DL L P + I R A
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 474 ---------ETRVIGPLVAHLS---HRN--QEVA--------TEAAIAL----QKFASPE 507
T +I + L +R ++ ++L +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 508 NFLCTEHSKAIIEFNAVPPLMRL--------LRGNDRTQLHGLALEQARVLTALEGADRT 559
+ H +++E + + ++ + LH ++ + + D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 560 V------VAQHPELKELVSEALYHL 578
H + +HL
Sbjct: 466 PPYLDQYFYSH-----IG----HHL 481
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 8e-06
Identities = 70/490 (14%), Positives = 136/490 (27%), Gaps = 149/490 (30%)
Query: 8 KRIEDELSYPILLAERVRSAVDESESFKAECAEVGKQVDRLSQMLR-----------TVV 56
K ++D +S + K E + D +S LR V
Sbjct: 36 KDVQDMP----------KSILS-----KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 57 RF------------TTPAQSLYERPIRRVVSEVSKNLERSLTLVRKCKRQSVLRRVVTIV 104
+F +P ++ +P + + +R + + +V R
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRL----- 134
Query: 105 SAADFRKLLNLLDASVGDMRWLLSIFDSEN------GGASGGIVLTLPPIASNDPMLS-- 156
+ L L + LL + ++N G SG + L + + +
Sbjct: 135 -----QPYLKL-------RQALLELRPAKNVLIDGVLG-SGKTWVAL-DVCLSYKVQCKM 180
Query: 157 -----WVWSYIAAIQMGQLSDRIEAAIE-LASLAKDNDRNKKIIVEEGGVPP-------- 202
W + + + E +E L L D N +
Sbjct: 181 DFKIFW-------LNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 203 -LLKLLKETASSEA-------QSAAATALYNIANDQERVRVIV--------SELGVPTIV 246
L +LLK Q+A A +N+ ++++ L T
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTT 287
Query: 247 NVLSDSIMKV--QIQVASLVARMAEHDALAQDDFARENV-IRPLVTLLSFETFVDDP-RA 302
++ D +V SL+ + + D RE + P + E+ D
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 303 NSGKQSIHTIVQINK--EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKD----RENEKPE 356
++ K V +K + ++S P Y + +
Sbjct: 345 DNWKH-----VNCDKLTTIIESSL---NVLEPAEYRKM--------FDRLSVFPPS---- 384
Query: 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITA 416
I + +W ++ + L LVEK+ E + +E+
Sbjct: 385 AHIPTILLS--LIW--FDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 417 AAESNADLRR 426
E+ L R
Sbjct: 438 KLENEYALHR 447
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 49/312 (15%), Positives = 90/312 (28%), Gaps = 55/312 (17%)
Query: 188 DRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVN 247
N+K I+ + L + + S + +YNI + + + + V I+
Sbjct: 447 LFNEKYILRTELISFLKREMH-NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILE 505
Query: 248 VL---SDSIMKVQIQVASLVARMA--EHDALAQDDFARENVIRPLVTLLSFETFVDDPRA 302
L D ++I + RM + L ++ N I L LL T VDD
Sbjct: 506 YLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPL 565
Query: 303 NSGKQ-----------SIHTIVQINKEMEKN---SFVGSKNYRP----YLYSEY------ 338
++ +Q ++ + + V +K Y + E
Sbjct: 566 HNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625
Query: 339 --------CSSRSGQNRKDRENEKPEVKIKLKI--------------ACAEALWMLARGS 376
S K E P+ I A A +A
Sbjct: 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685
Query: 377 VANSRRISETKGLLCLAKLV---EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433
++ + K L+ A V + + EL+ LM + N +
Sbjct: 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQEN 745
Query: 434 PAAKAVVDQLLR 445
K ++ L+
Sbjct: 746 QKLKDALNMSLK 757
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 193 IIVEEGGVPPLLKLLKETASSEAQSAAATALYNI-ANDQERVR--VIVSELGVPTIVNVL 249
I ++ V LL LL+E + L ++ +V+ ++VS +GV ++++L
Sbjct: 117 FIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175
Query: 250 SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRA 302
+DS ++ L+ + + Q A EN L+ +++ E D
Sbjct: 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIV 228
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 22/123 (17%)
Query: 414 ITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473
+ A+ N +RR S + LL +++ + ++ A IG+ +
Sbjct: 18 GSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSN-EDWRIRGAAAWIIGNF------Q 70
Query: 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533
+ R + PL+ L + V + AA +L++ + +L
Sbjct: 71 DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGER---------------VRAAMEKLAET 115
Query: 534 NDR 536
Sbjct: 116 GTG 118
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 45/310 (14%), Positives = 116/310 (37%), Gaps = 30/310 (9%)
Query: 200 VPPLLKLLKETASSE---AQSAAATALYNIAN--DQERVRVIVSELGVPTIVNVLSDSIM 254
+ P+L+ +++ +++ + AA A +I + D+ + V + +P+I+N+++D +
Sbjct: 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQA-LPSILNLMNDQSL 425
Query: 255 KVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314
+V+ A + R+A+ + + + +V D P+ TI+
Sbjct: 426 QVKETTAWCIGRIADS---VAESIDPQQHLPGVVQAC-LIGLQDHPK--VATNCSWTIIN 479
Query: 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR 374
+ +++ + + N+ P L + + + + + + AL +
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGA----------ANRIDNEFNARASAFSALTTMVE 529
Query: 375 GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP 434
+ S + + KL + + L + + + A + +
Sbjct: 530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS 589
Query: 435 AAKAVVDQLL----RVINDLDSPTLQIPAIKSIGSLART----FPARETRVIGPLVAHLS 486
+ + V D L+ R++ DS ++ +I +LA + F L+ L+
Sbjct: 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN 649
Query: 487 HRNQEVATEA 496
+ V+ A
Sbjct: 650 QVDSPVSITA 659
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.97 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.97 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.97 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.97 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.96 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.95 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.95 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.95 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.95 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.94 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.94 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.91 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.91 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.89 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.89 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.89 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.88 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.87 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.87 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.58 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.55 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.55 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.48 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.35 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.33 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.32 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.29 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.27 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.26 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.23 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.21 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.16 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.15 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.12 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.08 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.06 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.03 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.01 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.91 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.7 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.58 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.52 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.51 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.47 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.44 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.35 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.34 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.16 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.06 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.01 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.01 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.95 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.84 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.81 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.76 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.75 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.74 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.69 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.63 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.4 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.34 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.23 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.06 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.89 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.49 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.41 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.84 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 94.03 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 93.96 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 93.77 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 93.33 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 92.92 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 92.43 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 92.34 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 91.6 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 91.59 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 91.37 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 91.31 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 91.2 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 91.17 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 89.82 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 89.04 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 87.09 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 86.18 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 84.53 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 84.12 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 83.97 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 83.27 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 82.22 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 80.99 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 80.94 |
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=346.35 Aligned_cols=404 Identities=18% Similarity=0.214 Sum_probs=310.8
Q ss_pred CCcccCCcchH-HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHH
Q 040681 146 PPIASNDPMLS-WVWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATAL 223 (594)
Q Consensus 146 ~~ia~~~~i~~-~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL 223 (594)
+.+.++.+... .|.++|..++++|++.+.+|+..++.+.. +...-...|++.|+||+||++|+.++++++|.+|+|+|
T Consensus 46 ~~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL 125 (510)
T 3ul1_B 46 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125 (510)
T ss_dssp -------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 33444433322 38889999999999999999999998653 33344588999999999999998765599999999999
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccC
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRA 302 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 302 (594)
+||+. +++++..+++.|++|.|+++|+++++++++.|+|+|+||+.+++.++..+.+.|++++|+.+|.........
T Consensus 126 ~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~-- 203 (510)
T 3ul1_B 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA-- 203 (510)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC--
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh--
Confidence 99986 778899999999999999999999999999999999999998899999999999999999999876321110
Q ss_pred ccchhhHHH--HHHHhhhhccccc----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC
Q 040681 303 NSGKQSIHT--IVQINKEMEKNSF----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS 376 (594)
Q Consensus 303 v~~~~si~~--l~l~~~~~~~~~~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~ 376 (594)
...++. ..+.|+....... ...++++.|+.++. .+++ .++..++++|++|+.++
T Consensus 204 ---~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-------------~~~~----~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 204 ---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-------------HNDP----EVLADSCWAISYLTDGP 263 (510)
T ss_dssp ---HHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-------------CSCH----HHHHHHHHHHHHHTSSC
T ss_pred ---HHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-------------cCCH----HHHHHHHHHHHHHhhch
Confidence 001111 1333433322111 12344444443331 1232 46788999999999877
Q ss_pred hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhH
Q 040681 377 VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ 456 (594)
Q Consensus 377 ~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~ 456 (594)
++..+.+.+.|+++.|+.+|.+++..++..++++|.||+ .+++..+.. +. +. ++++.|+.+|.+.+ +.++
T Consensus 264 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~---~~~~~~~~~-i~-~~----g~l~~L~~LL~~~~-~~v~ 333 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQK-VI-DA----GALAVFPSLLTNPK-TNIQ 333 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-HT----TGGGGCC-CTTCSS-HHHH
T ss_pred hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh---cCCHHHHHH-Hh-hc----cchHHHHHHhcCCC-HHHH
Confidence 887888899999999999999999999999999999997 556655553 33 22 37788888888665 8999
Q ss_pred HHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhc
Q 040681 457 IPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLL 531 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL 531 (594)
..|+++|+||+...+.. +.|++++|+.+|.+++.+++++|+|+|+|++..++ .++...+++.|++++|+++|
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~---~~~~~~L~~~g~i~~L~~LL 410 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLL 410 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC---HHHHHHHHHCCCHHHHHHHh
Confidence 99999999999755432 23899999999999999999999999999988555 58888999999999999999
Q ss_pred cCCch-HhHhHH----HHHH--------HHHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 532 RGNDR-TQLHGL----ALEQ--------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 532 ~~~~~-vq~~Al----~l~~--------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+.|+ ++..++ .+.+ ..+...++ +.+....+|+++..+++.+|..+|+.||+.
T Consensus 411 ~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99888 766655 1211 11222233 566667789999999999999999999983
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=335.57 Aligned_cols=393 Identities=18% Similarity=0.209 Sum_probs=309.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhh-ccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la-~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+.+++..++++|++.+..|+..++.+. .++......|++.|+||+|+++|+.++++.+|.+|+|+|+||+. +++.+.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4667889999999999999999998764 44445568889999999999999876659999999999999997 567789
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH--H
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT--I 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~--l 312 (594)
.+++.|++|+|+.+|.+++.++++.|+|+|+||+.+++.++..+.+.|++++|+.+|......... ...++. .
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~-----~~~~~~a~~ 231 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLA-----CGYLRNLTW 231 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSC-----HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhH-----HHHHHHHHH
Confidence 999999999999999999999999999999999998999999999999999999999876321110 001111 1
Q ss_pred HHHhhhhccccc----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCc
Q 040681 313 VQINKEMEKNSF----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKG 388 (594)
Q Consensus 313 ~l~~~~~~~~~~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~ 388 (594)
++.++..+.... ...++++.|+.+++ ..++ .++..++++|++++.++++..+.+++.|+
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~-------------~~~~----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~ 294 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLH-------------HNDP----EVLADSCWAISYLTDGPNERIEMVVKKGV 294 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTT-------------SSCH----HHHHHHHHHHHHHHSSCHHHHHHHHTTTC
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhc-------------CCcH----HHHHHHHHHHHHhhhhhhhhHHHHHhccc
Confidence 233333222111 12344554443331 1333 45778999999999888888888999999
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++.|+.+|.+++..++..++++|.||+ .+++..+.. +. .. ++++.|+.+|.+.+ +.++..|+++|+||+.
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~---~~~~~~~~~-i~-~~----g~l~~L~~LL~~~~-~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQK-VI-DA----GALAVFPSLLTNPK-TNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-HT----TGGGGHHHHTTCSS-HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHH---ccchHHHHH-Hh-hc----ccHHHHHHHHcCCC-HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999997 566666663 33 22 37888999998665 9999999999999997
Q ss_pred CChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 469 TFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 469 ~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
..+.. +.|++++|+.+|.+++.+++++|+|+|+|++..++ .++...+++.|+|++|+++|.+.|+ ++..++
T Consensus 365 ~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~---~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L 441 (529)
T 3tpo_A 365 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441 (529)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence 65432 34899999999999999999999999999987555 5888999999999999999999888 666555
Q ss_pred ----HHHH--------HHHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 ----ALEQ--------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 ----~l~~--------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+.+ ..+...++ +.+....+|+++..+++.+|..+|+.||+.
T Consensus 442 ~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 442 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 1211 11222233 666667789999999999999999999983
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=307.31 Aligned_cols=362 Identities=13% Similarity=0.130 Sum_probs=275.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~~i 236 (594)
+..++..|++++++.+..|+++|++++.+++.++..|++.|+||+|+++|++++ +++++.|+++|+||+.+ ++++..|
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 566889999999999999999999999988888989999999999999999988 99999999999999985 8999999
Q ss_pred HhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCc-CCCccCccchhhHHHHHH
Q 040681 237 VSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETF-VDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 v~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~v~~~~si~~l~l 314 (594)
++.|++|+|+++|+ ++++++++.++|+|+||+.+ +.++..+.+ |++++|+.+|..+.. ...+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~-------------- 146 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDG-------------- 146 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----------------
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccC--------------
Confidence 99999999999999 78999999999999999997 579998988 999999999943100 0000
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhh-CcHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET-KGLLCLA 393 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~-g~l~~L~ 393 (594)
...+.++..++ .+...|+++|+||+.+ +++++.+.+. |+++.|+
T Consensus 147 ------------------------------~~~~~~e~~~~----~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv 191 (457)
T 1xm9_A 147 ------------------------------NSNMSREVVDP----EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLM 191 (457)
T ss_dssp -------------------------------------CCCH----HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHH
T ss_pred ------------------------------ccchhcccccH----HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHH
Confidence 00011222232 4577899999999865 8889999997 9999999
Q ss_pred HHhhh------CCHHHHHHHHHHHHHHHHHhc---CCHH---------------HHHHhhhc------------------
Q 040681 394 KLVEK------EQGELQFNCLMTIMEITAAAE---SNAD---------------LRRAAFKT------------------ 431 (594)
Q Consensus 394 ~LL~~------~~~~v~~~A~~aL~nL~~~~~---~~~~---------------~r~~~~~~------------------ 431 (594)
.+|.+ .+..++.+|+++|.||+...+ .... ... .|..
T Consensus 192 ~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 270 (457)
T 1xm9_A 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG-CFSNKSDKMMNNNYDCPLPEEE 270 (457)
T ss_dssp HHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------------------------CCCCC
T ss_pred HHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccc-hhhccchhhhhccccCCccccc
Confidence 99986 345678899999999861100 0000 000 0000
Q ss_pred --CCh----hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----------hhhccHHHHHHhccCCCHHHHHH
Q 040681 432 --NSP----AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----------RETRVIGPLVAHLSHRNQEVATE 495 (594)
Q Consensus 432 --~~~----~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----------~~~~~i~~Lv~lL~~~~~~v~~~ 495 (594)
..+ ...++++.|+.+|.+..++.+++.|+++|+||+..... .+.+++|.|+++|.+++.+++++
T Consensus 271 ~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~ 350 (457)
T 1xm9_A 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350 (457)
T ss_dssp SSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHH
T ss_pred cCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHH
Confidence 000 12457889999999887799999999999999964321 12489999999999999999999
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-------HhHhHH---------------HHHHHHHHHHH
Q 040681 496 AAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-------TQLHGL---------------ALEQARVLTAL 553 (594)
Q Consensus 496 Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-------vq~~Al---------------~l~~~~~l~~L 553 (594)
|+|+|+|++. + ...+.++..|++++|+++|..+++ ++..++ .+.+.+++..|
T Consensus 351 A~~aL~nls~-----~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 351 GASLLSNMSR-----H-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp HHHHHHHHHT-----S-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHhc-----C-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 9999999987 2 234456667899999999997632 343443 12223444444
Q ss_pred hhhccccccccch-HHHHHHHHHHhccccccc
Q 040681 554 EGADRTVVAQHPE-LKELVSEALYHLNLYHAG 584 (594)
Q Consensus 554 e~~~~~~~~q~~~-~~~l~~~a~~~l~~~~~~ 584 (594)
. .++.+. ..+++.+|...|+.||..
T Consensus 425 ~------~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 425 I------NLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp H------HHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred H------HHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 3 222233 568999999999988863
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=305.39 Aligned_cols=361 Identities=16% Similarity=0.159 Sum_probs=272.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN--DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~ 234 (594)
.|..+|..|++++++.+..|+++|.+++.+++.++..|++.|+||+||++|++++ +++|++|+++|+||+. ++++|.
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHHHH
Confidence 3677899999999999999999999999988999999999999999999999998 9999999999999997 488999
Q ss_pred HHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc---CCcCC-----CccCccc
Q 040681 235 VIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF---ETFVD-----DPRANSG 305 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~-----~~~~v~~ 305 (594)
.|++.|+||+|+++|++ ++.+++++++++|++|+. ++.++..|.+ +++++|+.++.. +.... ..+....
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999997 488999999999999998 4578888885 579999998732 11000 0000000
Q ss_pred hhhHH--HHHHHhhhhcccc-c----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh-
Q 040681 306 KQSIH--TIVQINKEMEKNS-F----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV- 377 (594)
Q Consensus 306 ~~si~--~l~l~~~~~~~~~-~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~- 377 (594)
..... .-++.|++..+.. + ...|.+++|+.++...... ...+ ...+.+|+++|+||+....
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~------~~~~-----~~~~enav~aL~NLs~~~~~ 274 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ------KDSD-----SKLVENCVCLLRNLSYQVHR 274 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT------TCCS-----CHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc------cCcc-----HHHHHHHHHHHHHhhccccc
Confidence 00011 1266777754322 2 3567788888765321000 0011 1467889999999985411
Q ss_pred h------------------------hHHHHHhhCcHHHHHHHhh-hCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHhhhc
Q 040681 378 A------------------------NSRRISETKGLLCLAKLVE-KEQGELQFNCLMTIMEITAAAES-NADLRRAAFKT 431 (594)
Q Consensus 378 ~------------------------~~~~i~e~g~l~~L~~LL~-~~~~~v~~~A~~aL~nL~~~~~~-~~~~r~~~~~~ 431 (594)
+ -...+.+.++++.|+.+|. +.++.++++|+++|.|||+.... ...++. .+.
T Consensus 275 e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~-~v~- 352 (584)
T 3l6x_A 275 EIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS-ALR- 352 (584)
T ss_dssp HSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH-HHT-
T ss_pred cccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH-HHH-
Confidence 0 1122334567889999996 45789999999999999832211 123444 222
Q ss_pred CChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh---hccHHHHHHhccCC--------CHHHHHHHHHHH
Q 040681 432 NSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE---TRVIGPLVAHLSHR--------NQEVATEAAIAL 500 (594)
Q Consensus 432 ~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~---~~~i~~Lv~lL~~~--------~~~v~~~Aa~aL 500 (594)
. .++++.|+++|.+.+ ..+++.|+++|+||+....... .+++|+||++|.++ +.++...|+++|
T Consensus 353 ~----~~glp~Lv~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL 427 (584)
T 3l6x_A 353 Q----EKALSAIADLLTNEH-ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427 (584)
T ss_dssp S----HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred H----cCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence 2 347999999998776 8999999999999998665433 38999999999765 578999999999
Q ss_pred HHhcCCCCccchhhHHHHHHcCChHHHHHhccCC--ch-HhHhHH
Q 040681 501 QKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN--DR-TQLHGL 542 (594)
Q Consensus 501 ~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~--~~-vq~~Al 542 (594)
.|++. ++ .++.+.|++.|||++|+++|+++ .+ +++.|.
T Consensus 428 ~NL~a-~~---~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 428 NEVIA-EN---LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHT-TC---HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHhc-CC---HHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 99987 44 58999999999999999999976 44 666554
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=298.36 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=254.9
Q ss_pred HHHHHHHHhc------------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCh----------HHHHHhhccCC-CHH
Q 040681 158 VWSYIAAIQM------------GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGV----------PPLLKLLKETA-SSE 214 (594)
Q Consensus 158 i~~lv~~L~~------------~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I----------~~Lv~LL~~~~-~~~ 214 (594)
++-+|++|+. ++++.+.+|+|+|.|++.++++.....++.|.+ +.+++++.+.. +.+
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMD 151 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSC
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Confidence 4557888875 457999999999999999999999998898888 67777777642 122
Q ss_pred -----HHH-------HHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcC
Q 040681 215 -----AQS-------AAATALYNIANDQERVRVIVSELGVPTIVNVLSD-----------SIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 215 -----v~e-------~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~-----------~~~~v~~~aa~aL~~La~~~ 271 (594)
+++ +|+|+|+|++.++++|..|++.|++++|+.+|.. .++.++.+|+|+|.|||.++
T Consensus 152 ~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~ 231 (458)
T 3nmz_A 152 QDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 231 (458)
T ss_dssp CCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence 444 9999999999999999999999999999999952 25779999999999999988
Q ss_pred HHhHHHHHHc-CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccc
Q 040681 272 ALAQDDFARE-NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350 (594)
Q Consensus 272 ~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~ 350 (594)
+.++..+... |+|++||.+|.+++
T Consensus 232 ~~~k~~i~~~~GaIp~LV~LL~s~~------------------------------------------------------- 256 (458)
T 3nmz_A 232 VANKATLCSMKGCMRALVAQLKSES------------------------------------------------------- 256 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGCSC-------------------------------------------------------
T ss_pred cccHHHHHHcCCcHHHHHHHHhCCC-------------------------------------------------------
Confidence 7788888654 55999999998652
Q ss_pred ccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 351 ENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 351 ~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
..++..|+++|++|+.+ +++++..+++.|+++.|+.+| .+++.+++++|+.+|.||+. ++.+.+. .
T Consensus 257 --------~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~---~~~~nk~-~ 324 (458)
T 3nmz_A 257 --------EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA---HCTENKA-D 324 (458)
T ss_dssp --------HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH---HCHHHHH-H
T ss_pred --------HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc---CCHHHHH-H
Confidence 13578899999999864 578899999999999999975 56788999999999999983 2445555 3
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCCh---hhHHHHHHHHHHhhc---CCh-hh----hhccHHHHHHhccCCCHHHHHHHH
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSP---TLQIPAIKSIGSLAR---TFP-AR----ETRVIGPLVAHLSHRNQEVATEAA 497 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~---~v~~~a~~aL~~La~---~~~-~~----~~~~i~~Lv~lL~~~~~~v~~~Aa 497 (594)
+.... ++++.|+++|.+.++. .+++.|+++|+||+. ..+ .+ +.|++++|+.+|.+++.+++++|+
T Consensus 325 I~~~~----Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 325 ICAVD----GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHST----THHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHhc----CcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence 44333 3899999999876533 589999999999995 233 22 238999999999999999999999
Q ss_pred HHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 498 IALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 498 ~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
|+|+|++. ++ .+++..+++.|+|++|+++|.+++. +++.|+
T Consensus 401 ~aL~nLa~-~~---~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa 442 (458)
T 3nmz_A 401 GTLWNLSA-RN---PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442 (458)
T ss_dssp HHHHHHHS-SC---HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHc-CC---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 99999986 34 5889999999999999999998887 777664
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=291.04 Aligned_cols=392 Identities=18% Similarity=0.181 Sum_probs=310.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|.+++++.+..|+++|++++..++ .....+++.|+||.|+++|++++++.++..|+++|++|+.+ ++.+.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 47778999999999999999999999976544 77888999999999999999875589999999999999984 78899
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|++|+|+.+|.++++++++.|+|+|++|+..++.++..+.+.|++++|+.+|.... +. .....+. -++
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~--~v~~~a~--~~L 227 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT---KL--SMLRNAT--WTL 227 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC---CH--HHHHHHH--HHH
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC---CH--HHHHHHH--HHH
Confidence 9999999999999999999999999999999999988889999999999999999995431 11 0000011 134
Q ss_pred Hhhhhccccc---ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 315 INKEMEKNSF---VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 315 ~~~~~~~~~~---~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
.++....... ...|+++.|+..++. .|+ .++..++++|++++.+.++..+.+.+.|+++.
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~-------------~~~----~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHS-------------NDE----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTC-------------CCH----HHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCC-------------CCH----HHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 4554332111 145666666554421 232 45788999999999877777788899999999
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 392 LAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 392 L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
|+.+|.++++.++..|+++|.||+ .+++..++. +. +. ++++.|+.+|.+..++.++..|+++|+||+...+
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~---~~~~~~~~~-~~-~~----~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~ 361 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIV---TGDDAQTQC-II-DH----QALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-TT----THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHH---cCCHHHHHH-HH-Hh----hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999998 556666653 33 22 3889999999877359999999999999997543
Q ss_pred hh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH---
Q 040681 472 AR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL--- 542 (594)
Q Consensus 472 ~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al--- 542 (594)
.. +.++++.|+.+|.++++.++.+|+++|+|++..++ +++...+++.|++++|+++|..+++ ++..++
T Consensus 362 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 362 DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS---HDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 23899999999999999999999999999987434 5888899999999999999998887 777666
Q ss_pred -HHHHHH-------------HHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 -ALEQAR-------------VLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 -~l~~~~-------------~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+.+.+ ....++ +......++++...+++..|..+++.||+.
T Consensus 439 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 439 ENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 222211 233333 334444567777888999999999999884
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=301.71 Aligned_cols=299 Identities=16% Similarity=0.167 Sum_probs=255.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCc-----------------------------hhH---HHHHhcCChHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDND-----------------------------RNK---KIIVEEGGVPPLL 204 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~-----------------------------~~~---~~i~~~g~I~~Lv 204 (594)
.|+.||.+|.+++...+..|++.|.|++.+.+ .++ +.|++.|+||+|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 57778999999999999999999999998653 123 7889999999999
Q ss_pred HhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHH---HH
Q 040681 205 KLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDF---AR 280 (594)
Q Consensus 205 ~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i---~~ 280 (594)
++|++++ +.+|++|+|+|+||+.++++|..+++.|++|+|+.+|+++++.+++.|+|+|+||+.+ ++. ..| ..
T Consensus 502 ~LL~s~s-~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~--~~~~~~~~ 578 (810)
T 3now_A 502 ALAKTES-HNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE--VSFSGQRS 578 (810)
T ss_dssp HHHTCCC-HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH--HHTTTHHH
T ss_pred HHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh--hhhcchhh
Confidence 9999998 9999999999999999999999999999999999999999999999999999999975 332 211 12
Q ss_pred cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHH
Q 040681 281 ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIK 360 (594)
Q Consensus 281 ~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~ 360 (594)
.|++++|+.+|.++. . ..
T Consensus 579 ~~aIppLv~LL~~~~---~-----------------------------------------------------------~l 596 (810)
T 3now_A 579 LDVIRPLLNLLQQDC---T-----------------------------------------------------------AL 596 (810)
T ss_dssp HHTHHHHHHTTSTTS---C-----------------------------------------------------------HH
T ss_pred hcHHHHHHHHhCCCC---c-----------------------------------------------------------HH
Confidence 469999999996441 1 01
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
.+..|++||.||+.+++++++.+++.|+++.|+.+|.++++.+|.+|+++|+||+ .+++.+. .|..+.+ ++
T Consensus 597 ~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa----~~~~~~~-~~v~~~g----~l 667 (810)
T 3now_A 597 ENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV----MSEDVIK-MFEGNND----RV 667 (810)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT----TSHHHHH-HHHSSSS----HH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh----CChHHHH-HHHhccC----cH
Confidence 2457899999999888899999999999999999999999999999999999997 3445666 3553333 78
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCh-hh----h-hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhh
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFP-AR----E-TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEH 514 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~-~~----~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~ 514 (594)
+.|+.++.+.+ ..++..|+++|+||+...+ .. + .|++++|+++|.+++.++++.|+|+|.|+++ ++ .++
T Consensus 668 ~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~-~s---~e~ 742 (810)
T 3now_A 668 KFLALLCEDED-EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN-AG---EEI 742 (810)
T ss_dssp HHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT-TC---HHH
T ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh-CC---HHH
Confidence 99999998765 9999999999999997332 21 2 4899999999999999999999999999987 33 588
Q ss_pred HHHHHHcCChHHHHHhccCC
Q 040681 515 SKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 515 ~~~i~~~g~i~~Lv~lL~~~ 534 (594)
.+.+++.|++++|+++|...
T Consensus 743 ~~~l~e~G~i~~L~~LL~~~ 762 (810)
T 3now_A 743 AKKLFETDIMELLSGLGQLP 762 (810)
T ss_dssp HHHHHTSTHHHHHTTSCCCT
T ss_pred HHHHHHCCCHHHHHHHHhCc
Confidence 99999999999999999865
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=302.02 Aligned_cols=350 Identities=16% Similarity=0.136 Sum_probs=275.3
Q ss_pred cchHHHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCchhHHHHH-hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC
Q 040681 153 PMLSWVWSYIAAIQMG--QLSDRIEAAIELASLAKDNDRNKKIIV-EEGGVPPLLKLLKETASSEAQSAAATALYNIAND 229 (594)
Q Consensus 153 ~i~~~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~ 229 (594)
.+...+..++..|.++ |.+.+..|++.|..++.+ +..+..++ +.|+||+|+.+|++++ ..++..|+++|+||+.+
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~ 451 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNA 451 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCC
Confidence 3445567788888887 889999999999999987 56666665 6799999999999988 99999999999999974
Q ss_pred hh------------------------------HH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 230 QE------------------------------RV---RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 230 ~~------------------------------~~---~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
.+ .+ +.+++.|++|+|+.+|+++++++++.|+|+|+||+. +++++.
T Consensus 452 ~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~ 530 (810)
T 3now_A 452 YEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRG 530 (810)
T ss_dssp SCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHH
T ss_pred chhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHH
Confidence 31 22 788899999999999999999999999999999997 567999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.++|++++|+.+|.+++
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~------------------------------------------------------------- 549 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGT------------------------------------------------------------- 549 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSC-------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHccCC-------------------------------------------------------------
Confidence 9999999999999998763
Q ss_pred HHHHHHHHHHHHHHHhccC-ChhhHHH-HHhhCcHHHHHHHhhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCC
Q 040681 357 VKIKLKIACAEALWMLARG-SVANSRR-ISETKGLLCLAKLVEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~-~~~~~~~-i~e~g~l~~L~~LL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~ 433 (594)
...+..|++||.+|+.+ +++..-. ....|++|+|+.||.++. ...+..|+++|.||+ ..+++.++. +.. .
T Consensus 550 --~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa---~~~d~~~~~-Ii~-a 622 (810)
T 3now_A 550 --EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA---SMNESVRQR-IIK-E 622 (810)
T ss_dssp --HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-T
T ss_pred --HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh---cCCHHHHHH-HHH-c
Confidence 12478899999999853 3432110 012469999999998653 345678999999998 555677773 443 2
Q ss_pred hhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 434 PAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 434 ~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
++++.|+.+|.+.+ +.++.+|+++|+||+...+... .|.++.|+.+|++.+..++++|+|+|+|+++ ++
T Consensus 623 ----G~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~-~s 696 (810)
T 3now_A 623 ----QGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS-VS 696 (810)
T ss_dssp ----THHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-HC
T ss_pred ----CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CC
Confidence 37899999998665 8999999999999996543221 3789999999999999999999999999987 33
Q ss_pred ccchhhHHHHHH-cCChHHHHHhccCCch-HhHhHH---------------HHHHHHHHHHHhhhccccccccchHHHHH
Q 040681 509 FLCTEHSKAIIE-FNAVPPLMRLLRGNDR-TQLHGL---------------ALEQARVLTALEGADRTVVAQHPELKELV 571 (594)
Q Consensus 509 ~l~~~~~~~i~~-~g~i~~Lv~lL~~~~~-vq~~Al---------------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~ 571 (594)
.+.++.+++ .|++++|+++|.+++. +|..|+ .+.+++++..|....+..-..++++.+..
T Consensus 697 ---~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 697 ---VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp ---HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 478889998 8999999999999988 888877 23334555555533221112356777777
Q ss_pred HHHHHhccccc
Q 040681 572 SEALYHLNLYH 582 (594)
Q Consensus 572 ~~a~~~l~~~~ 582 (594)
.+|+..+..|.
T Consensus 774 l~aL~~ll~~g 784 (810)
T 3now_A 774 TQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCC
Confidence 77777765543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=277.32 Aligned_cols=392 Identities=17% Similarity=0.190 Sum_probs=305.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+..++..|++++++.+..|+..|+.++.. ++.....+++.|+||.|+++|++++++.++..|+++|++++. +++.+.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 477789999999999999999999998654 345667888999999999999997339999999999999998 567888
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|++|.|+.+|+++++++++.|+|+|++|+..++.++..+...|++++|+.+|.+.. .. + ...++ -++
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~--v-~~~a~--~~L 239 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK---PS--L-IRTAT--WTL 239 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC---HH--H-HHHHH--HHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC---HH--H-HHHHH--HHH
Confidence 9999999999999999999999999999999999988889999999999999999997642 10 0 00011 134
Q ss_pred Hhhhhcc-ccc---ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 315 INKEMEK-NSF---VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 315 ~~~~~~~-~~~---~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.++.... ... ...+++++|+..+.. +|+ .++..++++|.+|+.+.++..+.+.+.|+++
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~-------------~d~----~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYS-------------MDT----ETLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTC-------------CCH----HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcC-------------CCH----HHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 4554332 111 134566666544411 232 4678899999999987788888889999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.|+.+|.+++..++..|+++|.||+ .+++...+. +.. .++++.|+.+|.+.+ +.++..|+++|++|+...
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~~-----~~~l~~L~~lL~~~~-~~vr~~A~~aL~~l~~~~ 372 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIV---TGNDLQTQV-VIN-----AGVLPALRLLLSSPK-ENIKKEACWTISNITAGN 372 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHH---cCCHHHHHH-HHH-----cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999997 555655552 332 248899999998775 999999999999999754
Q ss_pred hhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH--
Q 040681 471 PAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL-- 542 (594)
Q Consensus 471 ~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al-- 542 (594)
+.. +.++++.|+.+|.++++.++.+|+|+|+|++..+++ .+++.+.+++.|++++|+.+|...++ ++..|+
T Consensus 373 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~a 451 (530)
T 1wa5_B 373 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 321 248999999999999999999999999999874331 12678888999999999999998887 877766
Q ss_pred --HHHHH-------------HHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 --ALEQA-------------RVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 --~l~~~-------------~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+... .....++ +......++++....++..|...|+.||+.
T Consensus 452 L~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 452 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 22211 1222232 333334456666778889999999999874
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=284.22 Aligned_cols=351 Identities=11% Similarity=0.148 Sum_probs=247.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..++..|++++++.+..|+++|++++.++++++..|++.|+||+|+++|+ +++ ++++++|+|+|+||+.++++|..
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~~~~~~~~ 123 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-AEIQKQLTGLLWNLSSTDELKEE 123 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSSSTHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhcCHHhHHH
Confidence 4677899999999999999999999999998999999999999999999999 677 99999999999999999889999
Q ss_pred HHhcCCHHHHHHhh--------cCC--------CHHHHHHHHHHHHHHhhcCHHhHHHHHHc-CChhhHHHhhhcCCcCC
Q 040681 236 IVSELGVPTIVNVL--------SDS--------IMKVQIQVASLVARMAEHDALAQDDFARE-NVIRPLVTLLSFETFVD 298 (594)
Q Consensus 236 iv~~g~i~~Lv~lL--------~~~--------~~~v~~~aa~aL~~La~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~ 298 (594)
|++ |++|+|+++| +++ +.+++.+|+|+|+|||.+ ++++..+.+. |++++|+.+|.++....
T Consensus 124 i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 201 (457)
T 1xm9_A 124 LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAAS 201 (457)
T ss_dssp HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHT
T ss_pred HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhcccc
Confidence 999 9999999999 333 456667999999999986 7899999998 99999999998631100
Q ss_pred CccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhc-----
Q 040681 299 DPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLA----- 373 (594)
Q Consensus 299 ~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~----- 373 (594)
+...-....++. ++.|+++........+. ..+.+.. +. +. . ......++++..
T Consensus 202 ~~~~~~~e~a~~--~L~nLs~~~~~~~~~~~-~~~~~~~------------~~---~~---~-~~~~~~~~~~~~~~~~~ 259 (457)
T 1xm9_A 202 RCDDKSVENCMC--VLHNLSYRLDAEVPTRY-RQLEYNA------------RN---AY---T-EKSSTGCFSNKSDKMMN 259 (457)
T ss_dssp CTTCTTHHHHHH--HHHHHTTTHHHHSCCHH-HHHHHTC-----------------------------------------
T ss_pred CCchHHHHHHHH--HHHhcccchhccCcchh-hhccccc------------cc---cc---c-cccccchhhccchhhhh
Confidence 000000000110 12232211000000000 0000000 00 00 0 000011111110
Q ss_pred ----------cCChhhHHHHHhhCcHHHHHHHhhhC-CHHHHHHHHHHHHHHHHHhcCC-HHHHHHhhhcCChhhHHHHH
Q 040681 374 ----------RGSVANSRRISETKGLLCLAKLVEKE-QGELQFNCLMTIMEITAAAESN-ADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 374 ----------~~~~~~~~~i~e~g~l~~L~~LL~~~-~~~v~~~A~~aL~nL~~~~~~~-~~~r~~~~~~~~~~~~~~v~ 441 (594)
..+++..+.+.+.|+++.|+.+|.++ ++.++++|+|+|.|||+..... ..+.+.. +... ++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~-v~~~----~~l~ 334 (457)
T 1xm9_A 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI-GLKE----KGLP 334 (457)
T ss_dssp ------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH-HTTS----CCHH
T ss_pred ccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHH-HHHc----CCch
Confidence 01233455677889999999999865 5899999999999998433221 1342322 3222 2789
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh---hhccHHHHHHhccCCC------HHHHHHHHHHHHHhcCCCCccch
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR---ETRVIGPLVAHLSHRN------QEVATEAAIALQKFASPENFLCT 512 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~---~~~~i~~Lv~lL~~~~------~~v~~~Aa~aL~nl~~~~~~l~~ 512 (594)
.|+++|.+.+ ..++..|+++|+||+...... ..+++++|+++|.+.+ .++...++++|.|+.. ++ .
T Consensus 335 ~Lv~LL~~~~-~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~-~~---~ 409 (457)
T 1xm9_A 335 QIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA-SQ---P 409 (457)
T ss_dssp HHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT-TC---T
T ss_pred HHHHHHhCCC-HhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh-cC---H
Confidence 9999999876 899999999999999865443 2389999999997653 4788999999999987 33 3
Q ss_pred hhHHHHHHcCChHHHHHhccCC-ch-HhHhHH
Q 040681 513 EHSKAIIEFNAVPPLMRLLRGN-DR-TQLHGL 542 (594)
Q Consensus 513 ~~~~~i~~~g~i~~Lv~lL~~~-~~-vq~~Al 542 (594)
++.+.+.+.||+++|++++.++ +. +++.|.
T Consensus 410 ~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 8889999999999999999988 66 776664
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=267.34 Aligned_cols=266 Identities=17% Similarity=0.188 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC----------CCHHHHHHHHHHHHHhhCC-hhHHHHHHhc-
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET----------ASSEAQSAAATALYNIAND-QERVRVIVSE- 239 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~----------~~~~v~e~A~~aL~~La~~-~~~~~~iv~~- 239 (594)
.+.+|+++|.+++.+ +++|+.|++.|++++|+.+|... .++.+|++|+|+|.||+.+ ++++..|...
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 455899999999987 89999999999999999999521 1278999999999999985 4578877654
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~ 318 (594)
|+||+|+++|+++++++++.|+|+|+||+.. ++.++..+.+.|+|++||.+|.... +
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~------------------- 184 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---K------------------- 184 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---C-------------------
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---C-------------------
Confidence 5599999999999999999999999999985 6789999999999999999864331 1
Q ss_pred hcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHH-hhCcHHHHHHHhh
Q 040681 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRIS-ETKGLLCLAKLVE 397 (594)
Q Consensus 319 ~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~-e~g~l~~L~~LL~ 397 (594)
..++..++.+||+|+..+++++..++ ..|+++.|+++|.
T Consensus 185 ----------------------------------------~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~ 224 (354)
T 3nmw_A 185 ----------------------------------------ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 224 (354)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhc
Confidence 13467889999999876788888888 7999999999998
Q ss_pred hCCH----HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-
Q 040681 398 KEQG----ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA- 472 (594)
Q Consensus 398 ~~~~----~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~- 472 (594)
++++ +++++|+++|.||+.....+++.+.. +. +.| +++.|+.+|++.+ ..+++.|+++|+||+...+.
T Consensus 225 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~-i~-~~g----~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 297 (354)
T 3nmw_A 225 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI-LR-ENN----CLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKD 297 (354)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH-HH-TTT----HHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH-HH-HcC----CHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHH
Confidence 7654 58999999999998532356677773 44 333 8899999999766 89999999999999954332
Q ss_pred h----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 473 R----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 473 ~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
. +.|++++|+++|.+++..++++|+++|.|++. ++
T Consensus 298 ~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~-~~ 336 (354)
T 3nmw_A 298 QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA-NR 336 (354)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CC
Confidence 2 23999999999999999999999999999998 44
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=274.21 Aligned_cols=348 Identities=17% Similarity=0.177 Sum_probs=269.7
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.|+.||..|+ .++++.+.+|+|+|.+++.+++++++.|++.|+||+|+++|++++ +++++.|+|+|+||+.+ ++.|.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHH
Confidence 4777999996 456899999999999999999999999999999999999999998 99999999999999985 66799
Q ss_pred HHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh--hcCCcCCCccCccchh
Q 040681 235 VIVSELGVPTIVNVLSDSI-----MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL--SFETFVDDPRANSGKQ 307 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~-----~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~v~~~~ 307 (594)
.+++.|++++|+.+|.+++ ..++..++|+|++++.+...........++++.|+.+| .+...+.+
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~-------- 251 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD-------- 251 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHH--------
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHH--------
Confidence 9999999999999998653 45788899999999976433333333456788887765 22221110
Q ss_pred hHHHHHHHhhhhcccc----cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 040681 308 SIHTIVQINKEMEKNS----FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRI 383 (594)
Q Consensus 308 si~~l~l~~~~~~~~~----~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i 383 (594)
+. .++.++...... ..+.|+++.|+.++.. .+ ..++..++++|++++.+++..+..+
T Consensus 252 A~--~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-------------~~----~~v~~~al~aL~nl~~~~~~~~~~i 312 (510)
T 3ul1_B 252 SC--WAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------TE----LPIVTPALRAIGNIVTGTDEQTQKV 312 (510)
T ss_dssp HH--HHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-------------SC----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHHhhchhhhHHHHHhcccchhhhhhhcC-------------CC----hhhhhHHHHHHHHhhcCCHHHHHHH
Confidence 01 234444433221 2367788777765522 12 2467889999999998999999999
Q ss_pred HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
++.|+++.|+.+|.+++.+++..|+|+|+||+ .++++.+.. +.. .++++.|+.++.+.+ ..++..|+++|
T Consensus 313 ~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~---a~~~~~~~~-v~~-----~g~i~~Lv~lL~~~~-~~v~~~Aa~aL 382 (510)
T 3ul1_B 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNIT---AGRQDQIQQ-VVN-----HGLVPFLVGVLSKAD-FKTQKEAAWAI 382 (510)
T ss_dssp HHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTHHHHHHHHHHSSC-HHHHHHHHHHH
T ss_pred hhccchHHHHHHhcCCCHHHHHHHHHHHHHHH---cCcHHHHHH-HHh-----cCCHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 99999999999999999999999999999998 566666663 332 238999999999876 99999999999
Q ss_pred HHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc--chhhHHHHHHcCChHHHHHhccCCc
Q 040681 464 GSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL--CTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 464 ~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l--~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+|++...... +.|++++|+.+|++.+++++..+.++|.|+..-+..+ ....+..|.+.||+..|-.|..+.+
T Consensus 383 ~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 462 (510)
T 3ul1_B 383 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 462 (510)
T ss_dssp HHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred HHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC
Confidence 9999754432 3499999999999999999999999999985311000 1233455678999999998887776
Q ss_pred h-HhHhHH
Q 040681 536 R-TQLHGL 542 (594)
Q Consensus 536 ~-vq~~Al 542 (594)
. +.+.|.
T Consensus 463 ~~i~~~A~ 470 (510)
T 3ul1_B 463 ESVYKASL 470 (510)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6 776665
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=271.66 Aligned_cols=348 Identities=17% Similarity=0.174 Sum_probs=272.4
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQ-MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~-~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.|+.||..|. +.+++.+.+|+++|.+++.+++.+++.+++.|+||+|+++|++++ +++++.|+|+|+||+. +++.|.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHHHHH
Confidence 4677888886 456899999999999999999999999999999999999999998 9999999999999998 467899
Q ss_pred HHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh--hcCCcCCCccCccchh
Q 040681 235 VIVSELGVPTIVNVLSDSI-----MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL--SFETFVDDPRANSGKQ 307 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~-----~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~v~~~~ 307 (594)
.+++.|++++|+.+|..++ ..++..++|+|++++.+...........++++.|+.+| .....+.+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~-------- 270 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD-------- 270 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHH--------
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHH--------
Confidence 9999999999999998653 45788999999999986533333344456788888775 32221111
Q ss_pred hHHHHHHHhhhhcccc----cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 040681 308 SIHTIVQINKEMEKNS----FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRI 383 (594)
Q Consensus 308 si~~l~l~~~~~~~~~----~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i 383 (594)
+. .++.++...... ..+.|++++|+.++.+ .+ ..++..++++|++++.+++..+..+
T Consensus 271 a~--~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-------------~~----~~v~~~a~~aL~nl~~~~~~~~~~i 331 (529)
T 3tpo_A 271 SC--WAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------TE----LPIVTPALRAIGNIVTGTDEQTQKV 331 (529)
T ss_dssp HH--HHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-------------SC----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HH--HHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-------------CC----hhHHHHHHHHHHHHHccchHHHHHH
Confidence 11 233444433221 2367888888765522 12 2467889999999998899999999
Q ss_pred HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
++.|+++.|+.+|.+++++++..|+|+|+||+ .++++.+.. +. . .++++.|+.++.+.+ ..++..|+++|
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~---~~~~~~~~~-v~-~----~g~i~~Lv~lL~~~~-~~v~~~A~~aL 401 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNIT---AGRQDQIQQ-VV-N----HGLVPFLVGVLSKAD-FKTQKAAAWAI 401 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH---TSCHHHHHH-HH-H----TTHHHHHHHHHHSSC-HHHHHHHHHHH
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHh---cccHHHHHH-HH-h----cCcHHHHHHHhcCCC-HHHHHHHHHHH
Confidence 99999999999999999999999999999998 566666663 33 2 238999999998776 89999999999
Q ss_pred HHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCccc-hhhHHHHHHcCChHHHHHhccCCc
Q 040681 464 GSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASP-ENFLC-TEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 464 ~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~-~~~l~-~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+|++...... +.|+|++|+.+|++.++++...+.++|.|+..- +..-+ ...+..|.+.||+..|-.|..+.+
T Consensus 402 ~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n 481 (529)
T 3tpo_A 402 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 481 (529)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS
T ss_pred HHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999654322 349999999999999999999999999998531 11001 223455679999999999888776
Q ss_pred h-HhHhHH
Q 040681 536 R-TQLHGL 542 (594)
Q Consensus 536 ~-vq~~Al 542 (594)
. +.+.|.
T Consensus 482 ~~i~~~A~ 489 (529)
T 3tpo_A 482 ESVYKASL 489 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6 877765
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=268.12 Aligned_cols=354 Identities=16% Similarity=0.195 Sum_probs=259.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCC-----------HHHHHHHHHHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETAS-----------SEAQSAAATALY 224 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~-----------~~v~e~A~~aL~ 224 (594)
..+..++..+.+.+.+ +..+.|..+... +..+..+++.|+||.||++|+..+. ++++.+|+|+|.
T Consensus 32 ~~~~~l~~~~~~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -------------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 3455677777777766 367788888865 6788899999999999999997432 799999999999
Q ss_pred HhhC-ChhHHHHHHhcCCH----------HHHHHhhcCC--CHH-----HHH-------HHHHHHHHHhhcCHHhHHHHH
Q 040681 225 NIAN-DQERVRVIVSELGV----------PTIVNVLSDS--IMK-----VQI-------QVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 225 ~La~-~~~~~~~iv~~g~i----------~~Lv~lL~~~--~~~-----v~~-------~aa~aL~~La~~~~~~~~~i~ 279 (594)
||+. .++......+.|++ +.+++++.+. +.+ +++ +|+|+|.|++. ++++|+.|.
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 9997 66777777777777 7777878765 223 555 99999999987 589999999
Q ss_pred HcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHH
Q 040681 280 RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI 359 (594)
Q Consensus 280 ~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~ 359 (594)
+.|++++|+.+|..+...... ..+ ....
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~---------------------------------------------------~~~-~~~~ 214 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGL---------------------------------------------------TND-HYSI 214 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTT---------------------------------------------------CCC-HHHH
T ss_pred HCCCHHHHHHHHhhhhccccc---------------------------------------------------ccC-CCCH
Confidence 999999999999643100000 000 0112
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHh-hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHhhhcCChhhH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISE-TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAES-NADLRRAAFKTNSPAAK 437 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e-~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~r~~~~~~~~~~~~ 437 (594)
.++..|+++|.||+.+++.++..+.. .|+||.|+.+|.+++++++.+|+|+|.||+ .. +++.+. .+. ..
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs---~~~~~~~k~-~I~-~~---- 285 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS---WRADVNSKK-TLR-EV---- 285 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT---SSCCHHHHH-HHH-HT----
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh---cCCCHHHHH-HHH-Hc----
Confidence 46889999999999888777777754 566999999999999999999999999997 33 456666 344 22
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC-hhh-----hhccHHHHHHhccCCCH----HHHHHHHHHHHHhcC--
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF-PAR-----ETRVIGPLVAHLSHRNQ----EVATEAAIALQKFAS-- 505 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~-~~~-----~~~~i~~Lv~lL~~~~~----~v~~~Aa~aL~nl~~-- 505 (594)
++++.|+++|.+..+..+++.|+.+|+||+... ..+ ..|++++|+++|.+++. +++++|+|+|.|++.
T Consensus 286 GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 388999998765555899999999999999733 221 34899999999976654 599999999999974
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH---------------HHHHHHHHHHHhhhccccccccchHHH
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL---------------ALEQARVLTALEGADRTVVAQHPELKE 569 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al---------------~l~~~~~l~~Le~~~~~~~~q~~~~~~ 569 (594)
.++ .+++..+++.|++++|+++|.+++. +|++|+ .+.+.+++..|....+. .++.+++
T Consensus 366 a~~---~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s---~~~~v~~ 439 (458)
T 3nmz_A 366 ATN---EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAM 439 (458)
T ss_dssp TTC---HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC---SSHHHHH
T ss_pred cCC---HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC---CCHHHHH
Confidence 123 5888899999999999999998887 888766 23345555555433222 3678888
Q ss_pred HHHHHHHhcccc
Q 040681 570 LVSEALYHLNLY 581 (594)
Q Consensus 570 l~~~a~~~l~~~ 581 (594)
-..+|+..|-.+
T Consensus 440 ~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 440 GSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 888888877443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=263.22 Aligned_cols=350 Identities=18% Similarity=0.223 Sum_probs=285.0
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|+++ ++..+..|+++|.+++.+++++.+.+++.|++|.|+++|++++ +++++.|+++|++|+.+ ++.+.
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHH
Confidence 456678888888 8999999999999999988888889999999999999999988 99999999999999985 56889
Q ss_pred HHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 235 VIVSELGVPTIVNVLSD-SIMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~-~~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
.+++.|+++.|+++|++ .+.+++..++|+|++|+.+. +..+..+. .++++.|+.++.++ +
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~----~------------- 205 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS----D------------- 205 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC----C-------------
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC----C-------------
Confidence 99999999999999996 58999999999999999754 33333333 67899999998654 1
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCL 392 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L 392 (594)
..++..++++|.+++...++....+.+.|+++.|
T Consensus 206 ----------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 239 (450)
T 2jdq_A 206 ----------------------------------------------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239 (450)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence 1346788999999987777888888999999999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
+.+|.+++..++..|+++|.+|+ .+++..++. +. +. ++++.|+.++.+.+ +.++..|+++|++++...+.
T Consensus 240 ~~ll~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~-~~----~~l~~L~~ll~~~~-~~vr~~a~~~L~~l~~~~~~ 309 (450)
T 2jdq_A 240 VELLMHNDYKVVSPALRAVGNIV---TGDDIQTQV-IL-NC----SALQSLLHLLSSPK-ESIKKEACWTISNITAGNRA 309 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-TT----THHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHCCCchhHHHHHHHHHHHHh---hCChHHHHH-HH-HC----ccHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999997 556655552 33 22 38899999998754 89999999999999964432
Q ss_pred h-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH----
Q 040681 473 R-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL---- 542 (594)
Q Consensus 473 ~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al---- 542 (594)
. +.++++.|+++|.+++++++.+|+|+|+|++..++ +++.+.+++.|++++|+++|..+++ ++..|+
T Consensus 310 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 386 (450)
T 2jdq_A 310 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS---AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLE 386 (450)
T ss_dssp HHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 24899999999999999999999999999987333 4778888899999999999998877 887766
Q ss_pred HHHHH-------------HHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 ALEQA-------------RVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 ~l~~~-------------~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+... .....++ +......++++....+...|...|+.||+.
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 387 NILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 22211 1122332 233333455667778999999999999863
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=274.77 Aligned_cols=332 Identities=15% Similarity=0.149 Sum_probs=252.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..||.+|.+++.+++..|+++|++++.+ +++++..|++.|+||+|+++|+++.+.+++++|+++|+||+.+++++..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~ 170 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 477799999999999999999999999985 7999999999999999999999854389999999999999999999999
Q ss_pred HHhcCCHHHHHHhhc------------------CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCC-hhhHHHhhhcCCc
Q 040681 236 IVSELGVPTIVNVLS------------------DSIMKVQIQVASLVARMAEHDALAQDDFARENV-IRPLVTLLSFETF 296 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~------------------~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~ 296 (594)
|++ +++|+|+++|. ..+.+++++|+++|+||+.+++++|..+.+++| +++||.+|.....
T Consensus 171 I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~ 249 (584)
T 3l6x_A 171 IVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG 249 (584)
T ss_dssp HHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhc
Confidence 996 57999999871 125799999999999999988888999998765 6799999975310
Q ss_pred CCCccCccchhhHHHHHHHhhhhccc--c------------------cccCCCcccc---------cchhccccCCCccc
Q 040681 297 VDDPRANSGKQSIHTIVQINKEMEKN--S------------------FVGSKNYRPY---------LYSEYCSSRSGQNR 347 (594)
Q Consensus 297 ~~~~~~v~~~~si~~l~l~~~~~~~~--~------------------~~~~g~~~~L---------~~~~~~~s~~~~~~ 347 (594)
..+...-....+++ ++.|++.... . ....+.++.| +.++.
T Consensus 250 ~~~~~~~~~enav~--aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~--------- 318 (584)
T 3l6x_A 250 QKDSDSKLVENCVC--LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK--------- 318 (584)
T ss_dssp TTCCSCHHHHHHHH--HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH---------
T ss_pred ccCccHHHHHHHHH--HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc---------
Confidence 00000000011211 3455553310 0 0122233322 22221
Q ss_pred cccccCChHHHHHHHHHHHHHHHHhccCC----hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHH
Q 040681 348 KDRENEKPEVKIKLKIACAEALWMLARGS----VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNAD 423 (594)
Q Consensus 348 ~~~~~~dp~~k~~l~~~a~~aL~~L~~~~----~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 423 (594)
+..+ ..+++.|++||+|||.++ ..++..+.+.++++.|+.||.+++..++..|+++|.||+... .
T Consensus 319 ---~s~~----~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~----~ 387 (584)
T 3l6x_A 319 ---ESKT----PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA----R 387 (584)
T ss_dssp ---HCCC----HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC----S
T ss_pred ---cCCC----HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----h
Confidence 1122 346889999999998776 344556677899999999999999999999999999998433 2
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHhcCC-------ChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCC--C
Q 040681 424 LRRAAFKTNSPAAKAVVDQLLRVINDLD-------SPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHR--N 489 (594)
Q Consensus 424 ~r~~~~~~~~~~~~~~v~~Ll~lL~s~~-------~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~--~ 489 (594)
++. .|. .++++.|+.+|.+.+ +.+++.+|+++|+||+...+.. +.|+|++|+.+|.++ +
T Consensus 388 ~~~-~I~------~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~ 460 (584)
T 3l6x_A 388 NKE-LIG------KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460 (584)
T ss_dssp CHH-HHH------HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSC
T ss_pred HHH-HHH------hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCC
Confidence 344 231 458999999998763 3678999999999998544322 238999999999876 8
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCC
Q 040681 490 QEVATEAAIALQKFASPENFLCTEHSKAIIEFNA 523 (594)
Q Consensus 490 ~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~ 523 (594)
+.+++.|+++|+|+.. +.+.++.+.+.|.
T Consensus 461 ~~v~k~Aa~vL~nl~~-----~~elr~~~kk~G~ 489 (584)
T 3l6x_A 461 EKEVRAAALVLQTIWG-----YKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHHHHHHHHHHHT-----SHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHc-----CHHHHHHHHHcCC
Confidence 8999999999999987 5788888877654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=270.32 Aligned_cols=365 Identities=15% Similarity=0.130 Sum_probs=268.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|..+ +++.+..|+.+|.+++.+ +.++..+.+.|+||+|+++|++++ +.++..|+++|++|+.+ +..+.
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHH
Confidence 456678888755 899999999999999987 679999999999999999999998 99999999999999985 56788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH--H
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT--I 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~--l 312 (594)
.+++.|++|.|+++|++++.+++..++.+|.+++..+++++..+.+.|+++.|+.+|.++.... ..+. -
T Consensus 138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~---------~~~~a~~ 208 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK---------LLWTTSR 208 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH---------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHH---------HHHHHHH
Confidence 8889999999999999999999999999999999988899999999999999999998763110 0111 1
Q ss_pred HHHhhhhccccc---ccCCCcccccchhcc---------------ccCCCccccc-----------cccCChHHHHHHHH
Q 040681 313 VQINKEMEKNSF---VGSKNYRPYLYSEYC---------------SSRSGQNRKD-----------RENEKPEVKIKLKI 363 (594)
Q Consensus 313 ~l~~~~~~~~~~---~~~g~~~~L~~~~~~---------------~s~~~~~~~~-----------~~~~dp~~k~~l~~ 363 (594)
++.+++...... .+.|++++|+.++.. ++........ -..+++ .++.
T Consensus 209 ~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~----~v~~ 284 (529)
T 1jdh_A 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVT 284 (529)
T ss_dssp HHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCH----HHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCH----HHHH
Confidence 334444332222 145555555433211 1100000000 012343 4578
Q ss_pred HHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 364 ~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
.++++|++|+.+++++++.+.+.|+++.|+.+|.+. +++++..|+++|.||+.....+...+.. +.. .++++
T Consensus 285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-i~~-----~~~i~ 358 (529)
T 1jdh_A 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNA-VRL-----HYGLP 358 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHH-HHH-----TTCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHH-HHH-----cCChh
Confidence 899999999987788999999999999999999763 3789999999999997221112224542 332 23789
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHH--hcCCCCc------
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQK--FASPENF------ 509 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~n--l~~~~~~------ 509 (594)
.|+++|.+..++.++..++++|+|++...... +.|++++|+.+|.+++++++++|+|++.| +..++++
T Consensus 359 ~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~ 438 (529)
T 1jdh_A 359 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438 (529)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHH
Confidence 99999987765699999999999999754433 23889999999998889999988888877 2221110
Q ss_pred ---------cchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 510 ---------LCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 510 ---------l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
-+++++..+.+.|++++|++++.++++ ++..|.
T Consensus 439 ~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~ 481 (529)
T 1jdh_A 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHH
Confidence 024666778999999999999998887 877665
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=252.39 Aligned_cols=255 Identities=14% Similarity=0.189 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHc
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSD-----------SIMKVQIQVASLVARMAEHDALAQDDFARE 281 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~-----------~~~~v~~~aa~aL~~La~~~~~~~~~i~~~ 281 (594)
.+.+.+|+|+|+|++.++++|..|++.|++++|+.+|.. .+++++..|+|+|.|||.+++.++..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456678999999999999999999999999999999952 257899999999999999887788888655
Q ss_pred -CChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHH
Q 040681 282 -NVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIK 360 (594)
Q Consensus 282 -g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~ 360 (594)
|+|++||.+|.+++ ..
T Consensus 126 ~GaIp~LV~LL~s~~---------------------------------------------------------------~~ 142 (354)
T 3nmw_A 126 KGCMRALVAQLKSES---------------------------------------------------------------ED 142 (354)
T ss_dssp HHHHHHHHHGGGCSC---------------------------------------------------------------HH
T ss_pred CCcHHHHHHHHCCCC---------------------------------------------------------------HH
Confidence 45999999997652 13
Q ss_pred HHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHHHHHh-hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 361 LKIACAEALWMLARG-SVANSRRISETKGLLCLAKLV-EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 361 l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
++..|+++|+||+.+ +++++..+++.|+|+.|+++| ++++.+++++|+++|.||+ ..+++.+. .+.... +
T Consensus 143 v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs---~~~~~nk~-~i~~~~----G 214 (354)
T 3nmw_A 143 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS---AHCTENKA-DICAVD----G 214 (354)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---TTCHHHHH-HHHHST----T
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH---ccChhhhH-HHHHhc----C
Confidence 578899999999864 578899999999999999975 5678899999999999998 43555665 344333 3
Q ss_pred HHHHHHHHHhcCCCh---hhHHHHHHHHHHhhc----CChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCC
Q 040681 439 VVDQLLRVINDLDSP---TLQIPAIKSIGSLAR----TFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE 507 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~---~v~~~a~~aL~~La~----~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~ 507 (594)
+++.|+++|.+.++. .+++.|+++|+||+. ....+ +.|++++|+++|.+++..++++|+++|.|++. +
T Consensus 215 ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~-~ 293 (354)
T 3nmw_A 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-R 293 (354)
T ss_dssp HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-S
T ss_pred cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC-C
Confidence 899999999876533 589999999999996 33322 23899999999999999999999999999986 3
Q ss_pred CccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 508 NFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 508 ~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+ .+++..+++.|+|++|+++|.+++. +++.|.
T Consensus 294 ~---~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 294 N---PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp C---HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred C---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 4 5889999999999999999999887 777664
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=248.98 Aligned_cols=307 Identities=19% Similarity=0.262 Sum_probs=256.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhc--cCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAK--DNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERV 233 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~--~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~ 233 (594)
+..++..|++++++.|..|+.+|+.+.. .++.. ..+++. |++|.|+++|++++++.++..|+++|++++. +++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 5567888899999999999999999764 33444 556676 9999999999998339999999999999998 56778
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
..+++.|++|.|+++|+++++++++.|+++|++++..++..+..+.+.|+++.|+.++.++. +
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~-------------- 163 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---R-------------- 163 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---C--------------
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---C--------------
Confidence 88889999999999999999999999999999999988889999999999999999997531 1
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGLLCL 392 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~~L 392 (594)
..++..++++|++++.+. +.....++ .++++.|
T Consensus 164 ---------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L 197 (450)
T 2jdq_A 164 ---------------------------------------------LTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVL 197 (450)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHH
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHH
Confidence 135778999999998655 33333333 7899999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
+.++.++++.++..++|+|.+|+ ...++.+.. +.. .++++.|+.+|.+.+ +.++..|+++|++|+...+.
T Consensus 198 ~~~l~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~~-----~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 198 SWLLFVSDTDVLADACWALSYLS---DGPNDKIQA-VID-----AGVCRRLVELLMHND-YKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHT---SSSHHHHHH-HHH-----TTTHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHH---CCCcHHHHH-HHH-----cCcHHHHHHHHCCCc-hhHHHHHHHHHHHHhhCChH
Confidence 99999999999999999999997 444444442 332 237899999998655 99999999999999976543
Q ss_pred h-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 473 R-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 473 ~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
. +.|+++.|+.+|.+.++.++++|+++|+|++. ++ .++.+.+++.|+++.|+++|..+++ +|..|+
T Consensus 268 ~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~-~~---~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 268 QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA-GN---RAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT-SC---HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CC---HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 2 23899999999999999999999999999987 33 4777888899999999999998877 888766
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=260.82 Aligned_cols=360 Identities=16% Similarity=0.138 Sum_probs=270.9
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|..+ +++.+..|+.+|.+++.+ +.++..+.+.|+|++|+++|++++ +.++..|+++|+||+.+ +..+.
T Consensus 57 ~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 57 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHH
Confidence 466678888765 899999999999999987 669999999999999999999998 99999999999999984 56788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHH--H
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHT--I 312 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~--l 312 (594)
.+++.|++|.|+++|++++++++..++.+|.+|+..+++++..+.+.|+++.|+.+|.+... . ...+. -
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~---~------~~~~~a~~ 205 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY---E------KLLWTTSR 205 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---H------HHHHHHHH
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---H------HHHHHHHH
Confidence 88899999999999999999999999999999998778899999999999999999987631 0 00111 1
Q ss_pred HHHhhhhccccc---ccCCCcccccchhc---------------cccCCCcccc---c--------cccCChHHHHHHHH
Q 040681 313 VQINKEMEKNSF---VGSKNYRPYLYSEY---------------CSSRSGQNRK---D--------RENEKPEVKIKLKI 363 (594)
Q Consensus 313 ~l~~~~~~~~~~---~~~g~~~~L~~~~~---------------~~s~~~~~~~---~--------~~~~dp~~k~~l~~ 363 (594)
++.|++.....+ .+.|++++|+.++. +++....... + -..+|+ .++.
T Consensus 206 ~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~----~v~~ 281 (644)
T 2z6h_A 206 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVT 281 (644)
T ss_dssp HHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCH----HHHH
T ss_pred HHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCH----HHHH
Confidence 344444333222 14555655543321 1111100000 0 012333 4578
Q ss_pred HHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC-C-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 364 ACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE-Q-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 364 ~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~-~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
.++++|++|+.+++++++.+.+.|+++.|+.+|.+. + ++++..|+++|.||+.....+...+. .+.. .++++
T Consensus 282 ~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~-~v~~-----~~~l~ 355 (644)
T 2z6h_A 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN-AVRL-----HYGLP 355 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH-HHHH-----TTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH-HHHH-----ccChH
Confidence 899999999988888999999999999999999863 3 79999999999999722111112333 2332 23789
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHH----------------------HHHH
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQE----------------------VATE 495 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~----------------------v~~~ 495 (594)
.|+++|.+.+++.++..|+++|+||+...... +.++++.|+++|.+.+.+ ++..
T Consensus 356 ~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~ 435 (644)
T 2z6h_A 356 VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 435 (644)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHH
T ss_pred HHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHH
Confidence 99999987765799999999999999755433 338999999999765444 4555
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 496 AAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 496 Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
|+.+|.+++. +.+++..+.+.|++++|+++|.++++ +|+.|+
T Consensus 436 a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 478 (644)
T 2z6h_A 436 CTGALHILAR-----DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478 (644)
T ss_dssp HHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhc-----CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHH
Confidence 6666666655 34666788899999999999998877 887765
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=253.57 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.+..++..|+++++.++..|+..|.+++.+ +.++..+++. |++++|+++|+++++++++..|+++|++|+.+++++..
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 467788899999999999999999999987 5677777754 89999999998763399999999999999999899999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|++|.|+++|++++++++..++++|.+|+.+++..+..+.+.|+++.|+++|.+++
T Consensus 97 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~-------------------- 156 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 156 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCC--------------------
Confidence 999999999999999999999999999999999987778999999999999999997652
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++.+|++++.++++++..+.+.|+++.|+.+
T Consensus 157 -------------------------------------------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~l 193 (529)
T 1jdh_A 157 -------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193 (529)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 1236677889999998889999999999999999999
Q ss_pred hhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 396 VEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 396 L~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
|++++ ...+..++.+|.+++ .+++.+.. +.. .++++.|+.++.+.+ +.++..++++|++|++..+...
T Consensus 194 l~~~~~~~~~~~a~~~L~~l~----~~~~~~~~-~~~-----~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~ 262 (529)
T 1jdh_A 194 MRTYTYEKLLWTTSRVLKVLS----VCSSNKPA-IVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE 262 (529)
T ss_dssp HHHCCCHHHHHHHHHHHHHHT----TSTTHHHH-HHH-----TTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTCS
T ss_pred HHhCChHHHHHHHHHHHHHHh----cCcccHHH-HHH-----CCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcCChhhH
Confidence 98776 456778899999987 24455563 442 238999999998765 8999999999999997654322
Q ss_pred --hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC-Cc-h-HhHhHH
Q 040681 475 --TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-ND-R-TQLHGL 542 (594)
Q Consensus 475 --~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~-~-vq~~Al 542 (594)
.++++.|+++|.+.+++++..|+++|+|++. ++ .+++..+.+.|+++.|+++|.. ++ + ++..|+
T Consensus 263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~-~~---~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~ 331 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-TC---HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CC---HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHH
Confidence 3789999999999999999999999999977 33 4788999999999999999984 32 4 777766
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=248.09 Aligned_cols=313 Identities=16% Similarity=0.189 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..++..|.++++.++..|+++|.+++.+++.++..+.+.|++++|+++|....++.++..++|+|++|+.+.......
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 46668889999999999999999999999989999999999999999999954333999999999999999864444445
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...|++|.|+.+|.+++++++..++|+|++|+..++.....+.+.|+++.|+.+|.++.
T Consensus 241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--------------------- 299 (528)
T 4b8j_A 241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS--------------------- 299 (528)
T ss_dssp HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---------------------
Confidence 56899999999999999999999999999999887777778889999999999997652
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..|+++|++++.+++..++.+.+.|+++.|+.+|
T Consensus 300 ------------------------------------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 300 ------------------------------------------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH
T ss_pred ------------------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH
Confidence 13477899999999988888889999999999999999
Q ss_pred hhC-CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC-hhh-
Q 040681 397 EKE-QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF-PAR- 473 (594)
Q Consensus 397 ~~~-~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~-~~~- 473 (594)
.++ ++.++..|+|+|.||+ .++++.... +.. .++++.|+.+|.+.+ +.++..|+++|+|++... +..
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~---~~~~~~~~~-~~~-----~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~ 407 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNIT---AGNKDQIQA-VIN-----AGIIGPLVNLLQTAE-FDIKKEAAWAISNATSGGSHDQI 407 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHH---TSCHHHHHH-HHH-----TTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHH---CCCHHHHHH-HHH-----CCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHH
Confidence 998 8999999999999998 455555552 332 247899999998875 999999999999999763 221
Q ss_pred ----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCc-------cchhhHHHHHHcCChHHHHHhccCCch-HhHhH
Q 040681 474 ----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENF-------LCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHG 541 (594)
Q Consensus 474 ----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~-------l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~A 541 (594)
+.|++++|+.+|.+.+++++..|+++|.++...+.. -.......+.+.||++.|..+..+.++ ++..|
T Consensus 408 ~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a 487 (528)
T 4b8j_A 408 KYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487 (528)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 238999999999999999999999999999751100 001245677899999999999987776 77766
Q ss_pred H
Q 040681 542 L 542 (594)
Q Consensus 542 l 542 (594)
.
T Consensus 488 ~ 488 (528)
T 4b8j_A 488 V 488 (528)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=260.95 Aligned_cols=362 Identities=15% Similarity=0.124 Sum_probs=270.2
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.+..++..|..+ +++.+..|+.+|.+++.. +.++..+.+.|+|+.|+++|++++ +.++..|+++|.||+.+ ++.+.
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHH
Confidence 466678888755 899999999999999877 778899999999999999999998 99999999999999985 56788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|+++.|+.+|++++.+++..++.+|.+|+..+++++..+.+.|+++.|+.+|+.+.... ......-++
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~-------~~~~a~~aL 343 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK-------LLWTTSRVL 343 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH-------HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHH-------HHHHHHHHH
Confidence 8889999999999999999999999999999999878889999999999999999998763110 000001133
Q ss_pred Hhhhhccccc---ccCCCcccccchhcc---------------ccCCCccccc-----------cccCChHHHHHHHHHH
Q 040681 315 INKEMEKNSF---VGSKNYRPYLYSEYC---------------SSRSGQNRKD-----------RENEKPEVKIKLKIAC 365 (594)
Q Consensus 315 ~~~~~~~~~~---~~~g~~~~L~~~~~~---------------~s~~~~~~~~-----------~~~~dp~~k~~l~~~a 365 (594)
.+++.....+ .+.|++++|+.++.. ++........ -..+++ .++..|
T Consensus 344 ~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~----~vr~~A 419 (780)
T 2z6g_A 344 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI----NVVTCA 419 (780)
T ss_dssp HHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCH----HHHHHH
T ss_pred HHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCH----HHHHHH
Confidence 3333322221 144555555433321 1110000000 012333 457889
Q ss_pred HHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-CC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH
Q 040681 366 AEALWMLARGSVANSRRISETKGLLCLAKLVEK-EQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL 443 (594)
Q Consensus 366 ~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L 443 (594)
+++|++|+.+++++++.+.+.|+++.|+.+|.+ ++ ++++..|+++|.||+.........+.. +.. .++++.|
T Consensus 420 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~-v~~-----~~~l~~L 493 (780)
T 2z6g_A 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA-VRL-----HYGLPVV 493 (780)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH-HHH-----TTCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH-HHH-----cCCHHHH
Confidence 999999998888899999999999999999986 33 489999999999997221111113332 332 2378999
Q ss_pred HHHHhcCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCH----------------------HHHHHHH
Q 040681 444 LRVINDLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQ----------------------EVATEAA 497 (594)
Q Consensus 444 l~lL~s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~----------------------~v~~~Aa 497 (594)
+++|.+.+.+.++..|+++|+||+...... +.++++.|+++|.++++ +++..++
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~ 573 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHH
Confidence 999987775699999999999999754433 34889999999976544 4555667
Q ss_pred HHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 498 IALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 498 ~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+|++++. +.+++..+.+.|++++|+++|.++++ ++..|+
T Consensus 574 ~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~ 614 (780)
T 2z6g_A 574 GALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614 (780)
T ss_dssp HHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH
Confidence 77777765 35677778899999999999998887 887655
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=246.64 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=261.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCCh-hHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQ-ERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~-~~~~~i 236 (594)
+..++..|.+++++++..|+++|.+++.+++.++..+++.|++++|+++|++++ +.++..|+|+|++|+.+. ......
T Consensus 175 i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~ 253 (530)
T 1wa5_B 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWS 253 (530)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHhCCCCCCCcHH
Confidence 556788888899999999999999999988899999999999999999999977 999999999999999754 444455
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...|++|.|+.+|.+++++++..++|+|.+|+..++.....+.+.|+++.|+.+|.++.
T Consensus 254 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~--------------------- 312 (530)
T 1wa5_B 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--------------------- 312 (530)
T ss_dssp HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC---------------------
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCC---------------------
Confidence 66899999999999999999999999999999887777888888999999999997541
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..|+++|++++.+++...+.+.+.|+++.|+.+|
T Consensus 313 ------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 350 (530)
T 1wa5_B 313 ------------------------------------------TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 350 (530)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred ------------------------------------------hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH
Confidence 13467889999999988888888889999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA---- 472 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~---- 472 (594)
.+++..++..|+|+|.||+ .++++..+. +.. .++++.|+.+|.+.+ +.++..|+++|++++..+..
T Consensus 351 ~~~~~~vr~~A~~aL~~l~---~~~~~~~~~-~~~-----~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~ 420 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNIT---AGNTEQIQA-VID-----ANLIPPLVKLLEVAE-YKTKKEACWAISNASSGGLQRPDI 420 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTTTCTHH
T ss_pred cCCCHHHHHHHHHHHHHHH---cCCHHHHHH-HHH-----CCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999999999997 455555552 332 237899999998765 89999999999999975421
Q ss_pred ----hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCc-------cchhhHHHHHHcCChHHHHHhccCCch-HhHh
Q 040681 473 ----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENF-------LCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH 540 (594)
Q Consensus 473 ----~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~-------l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~ 540 (594)
.+.|++++|+.+|.+.++.++..|+++|.++...... ........+.+.||++.|..|+.+.+. ++..
T Consensus 421 ~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~ 500 (530)
T 1wa5_B 421 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEK 500 (530)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 1348999999999999999999999999999752110 001245667899999999999998877 8776
Q ss_pred HH
Q 040681 541 GL 542 (594)
Q Consensus 541 Al 542 (594)
|.
T Consensus 501 a~ 502 (530)
T 1wa5_B 501 AY 502 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=253.43 Aligned_cols=307 Identities=17% Similarity=0.211 Sum_probs=262.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..++..|+++++.+|..|+.+|.+++.++ .++..++.. |++++|+++|+++++++++..|+.+|.+|+.+++++..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence 4667888999999999999999999999874 577777754 88999999998874499999999999999999889999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|+++.|+++|+++++.++..|+++|.+|+..++..+..+.+.|+++.|+.+|.+++
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-------------------- 153 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 153 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--------------------
Confidence 999999999999999999999999999999999987678888999999999999997652
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++.+|++++.++++++..+.+.|+++.|+.+
T Consensus 154 -------------------------------------------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~l 190 (644)
T 2z6h_A 154 -------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190 (644)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHH
Confidence 0236667889999998889999999999999999999
Q ss_pred hhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 396 VEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 396 L~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
|++++ +.+++.++.+|.||+ .++..+.. +.. .++++.|+.++.+.+ ..++..++++|+||++..+...
T Consensus 191 L~~~~~~~~~~~a~~~L~nLs----~~~~~~~~-l~~-----~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~ 259 (644)
T 2z6h_A 191 MRTYTYEKLLWTTSRVLKVLS----VCSSNKPA-IVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE 259 (644)
T ss_dssp HTTCCCHHHHHHHHHHHHHHT----TCTTHHHH-HHH-----TTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTCC
T ss_pred HHcCChHHHHHHHHHHHHHHh----cCcccHHH-HHH-----CCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhhh
Confidence 98765 577889999999997 34456663 442 238899999998765 8999999999999997553322
Q ss_pred --hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC-Cc-h-HhHhHH
Q 040681 475 --TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-ND-R-TQLHGL 542 (594)
Q Consensus 475 --~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~-~-vq~~Al 542 (594)
.++++.|+++|.+.+++++..|+++|++++. ++ .+++..+.+.|+++.|+++|.. ++ + ++..|+
T Consensus 260 ~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~-~~---~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~ 328 (644)
T 2z6h_A 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328 (644)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-TC---HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CC---HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHH
Confidence 3789999999999999999999999999987 33 4778889999999999999985 33 4 777666
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.6e-25 Score=217.32 Aligned_cols=240 Identities=27% Similarity=0.306 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~~ 235 (594)
.|..++..|++++++.+..|+++|.+++.+++.++..+++.|+|++|+++|++++ +++++.|+++|++|+.+ ++.+..
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHHH
Confidence 3667889999999999999999999999998889999999999999999999998 99999999999999986 889999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|+++.|+.+|++++++++..++++|.+|+..++..+..+.+.|+++.|+.+|.++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-------------------- 141 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-------------------- 141 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--------------------
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--------------------
Confidence 999999999999999999999999999999999878899999999999999999997652
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++++|++++.++++.++.+.+.|+++.|+.+
T Consensus 142 -------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 142 -------------------------------------------SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 1347789999999998888888899999999999999
Q ss_pred hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 396 VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 396 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
|.++++.++..|+++|.+|+ ..++..++. +.. .++++.|++++.+.+ +.+++.|+++|+||+...
T Consensus 179 l~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-l~~-----~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 179 LTSTDSEVQKEAARALANIA---SGPTSAIKA-IVD-----AGGVEVLQKLLTSTD-SEVQKEAQRALENIKSGG 243 (252)
T ss_dssp TTCSCHHHHHHHHHHHHHHT---TSBHHHHHH-HHH-----TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTC
T ss_pred HCCCCHHHHHHHHHHHHHHH---cCCHHHHHH-HHH-----CCCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998 456666662 332 237788888887655 788888888888887544
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=220.39 Aligned_cols=237 Identities=19% Similarity=0.299 Sum_probs=202.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~i 236 (594)
...++..|++++++.+..|+++|+++...++.++..+++.|+||+|+++|++++ +++++.|+++|++|+. +++++..+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 345778899999999999999998876667889999999999999999999998 9999999999999997 78899999
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
++.|++|.|+.+|+++++++++.|+++|++|+.+++.....+.+.|+++.|+.+|.++.
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~--------------------- 151 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--------------------- 151 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC---------------------
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC---------------------
Confidence 99999999999999999999999999999999977544488899999999999996651
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++++|++++.++++.++.+.+.|+++.|+.+|
T Consensus 152 ------------------------------------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 189 (252)
T 4db8_A 152 ------------------------------------------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189 (252)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 13477899999999988888888999999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
.++++.++..|+++|.||+ ..+++.+.. +. +.|
T Consensus 190 ~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~~-------------------------------------------~~g 222 (252)
T 4db8_A 190 SSPNEQILQEALWALSNIA---SGGNEQKQA-VK-------------------------------------------EAG 222 (252)
T ss_dssp GCSSHHHHHHHHHHHHHHT---TSCHHHHHH-HH-------------------------------------------HTT
T ss_pred CCCCHHHHHHHHHHHHHHh---cCCHHHHHH-HH-------------------------------------------HCC
Confidence 9999999999999999997 455544441 11 335
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+++.|+++|.+++++++++|+++|.|++.
T Consensus 223 ~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 223 ALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 66777777777777777777777777653
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=247.31 Aligned_cols=307 Identities=16% Similarity=0.209 Sum_probs=260.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
.|..|+..|.++++.+|..|+.+|.+++.+ +.++..+.+. |+|+.|+++|++++++++++.|+++|.+|+.+++++..
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 567788889999999999999999999987 5677777754 89999999998773399999999999999999899999
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
+++.|+++.|+.+|+++++.++..|+++|.+|+..++..+..+.+.|+++.|+.+|.++.
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~-------------------- 289 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------- 289 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--------------------
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCC--------------------
Confidence 999999999999999999999999999999999987788899989999999999997641
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKL 395 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~L 395 (594)
..++..++.+|++++.++++++..+.+.|+++.|+.+
T Consensus 290 -------------------------------------------~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~l 326 (780)
T 2z6g_A 290 -------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326 (780)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 1235678889999988889999999999999999999
Q ss_pred hhhCCH-HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-
Q 040681 396 VEKEQG-ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR- 473 (594)
Q Consensus 396 L~~~~~-~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~- 473 (594)
|++++. ..+..++.+|.+|+. ++..+. .+.. .++++.|+.++.+.+ ..++..|+++|++|+......
T Consensus 327 L~~~~~~~~~~~a~~aL~~Ls~----~~~~~~-~i~~-----~g~l~~Ll~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~ 395 (780)
T 2z6g_A 327 MRTYTYEKLLWTTSRVLKVLSV----CSSNKP-AIVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE 395 (780)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHT----STTHHH-HHHH-----TTHHHHHGGGTTCSC-HHHHHHHHHHHHHHHTTCTTCS
T ss_pred HhcCCHHHHHHHHHHHHHHhhc----ChHHHH-HHHH-----hchHHHHHHHHcCCc-hHHHHHHHHHHHHHhccchhhh
Confidence 987764 566788999999982 233445 2332 248899999998765 889999999999999765432
Q ss_pred -hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC-Cc--hHhHhHH
Q 040681 474 -ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG-ND--RTQLHGL 542 (594)
Q Consensus 474 -~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~-~~--~vq~~Al 542 (594)
..++++.|+++|++.+++++..|+++|++++. ++ .+.+..+++.|+++.|+++|.. ++ .++..|+
T Consensus 396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~-~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al 464 (780)
T 2z6g_A 396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464 (780)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS-SC---HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-CC---HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHH
Confidence 23789999999999999999999999999987 33 4788889999999999999984 33 3776665
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-24 Score=210.61 Aligned_cols=234 Identities=25% Similarity=0.308 Sum_probs=207.5
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
|+||.|+++|++++ ++++..|+++|++++. +++++..+++.|+++.|+++|++++.+++..++++|.+|+.+++.++.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 67999999999998 9999999999999997 455899999999999999999999999999999999999998789999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.+.|+++.|+.+|.++.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~------------------------------------------------------------- 99 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTD------------------------------------------------------------- 99 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSS-------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999997641
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..++++|++++..+++.+..+.+.|+++.|+++|.++++.++..++++|.||+ ..+++.++. +..
T Consensus 100 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~---~~~~~~~~~-~~~----- 168 (252)
T 4hxt_A 100 --SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA---SGPDEAIKA-IVD----- 168 (252)
T ss_dssp --HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH---cCCHHHHHH-HHH-----
Confidence 135788999999998778999999999999999999999999999999999999998 556655552 332
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++++.|+.++.+.+ +.++..|+.+|++|+...+.. +.|+++.|++++.+++++++++|+++|.|++.
T Consensus 169 ~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 169 AGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp TTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 348999999998655 899999999999999754432 24899999999999999999999999999986
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=209.92 Aligned_cols=206 Identities=15% Similarity=0.171 Sum_probs=172.6
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHH
Q 040681 157 WVWSYIAAIQMGQL--SDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~--~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~ 233 (594)
.+..+|..|+++++ +.+..|+++|.+++.+++.++..|++.|+||+|+++|++++ +++|+.|+|+|+||+. +++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence 46778999999988 88999999999999998999999999999999999999988 9999999999999997 68899
Q ss_pred HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc---CCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF---ETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~~v~~~~si 309 (594)
..|++.|+||+|+++|+ +++.+++++++.+|+||+.++ .++..|.+ +++++|+.++.. +....
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~----------- 154 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEG----------- 154 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGG-----------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCccc-----------
Confidence 99999999999999998 569999999999999999854 67888876 479999987642 21000
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhh-Cc
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET-KG 388 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~-g~ 388 (594)
...|.....++ .++.+|+.+|+||+..+++.++.|.+. |+
T Consensus 155 -----------------------------------~~~~~~~~~~~----~v~~na~~~L~nLss~~~~~R~~~r~~~Gl 195 (233)
T 3tt9_A 155 -----------------------------------DYPKANGLLDF----DIFYNVTGCLRNMSSAGADGRKAMRRCDGL 195 (233)
T ss_dssp -----------------------------------GCCCCCTTCCH----HHHHHHHHHHHHHTTSCHHHHHHHHTSTTH
T ss_pred -----------------------------------ccccccccchH----HHHHHHHHHHHHHhcCCHHHHHHHHHCCCc
Confidence 00111112332 468899999999988788999999976 66
Q ss_pred HHHHHHHhhhC------CHHHHHHHHHHHHHHH
Q 040681 389 LLCLAKLVEKE------QGELQFNCLMTIMEIT 415 (594)
Q Consensus 389 l~~L~~LL~~~------~~~v~~~A~~aL~nL~ 415 (594)
|+.|+.+++.+ +...+++|+.+|.||+
T Consensus 196 i~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 196 IDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 79999999863 4578999999999996
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-22 Score=195.34 Aligned_cols=193 Identities=18% Similarity=0.249 Sum_probs=178.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 040681 159 WSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIV 237 (594)
Q Consensus 159 ~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv 237 (594)
+.++.+|++++++.+..|+++|.+++.+++.++..+++.|+||.|+++|++++ +++++.|+++|+||+. +++.+..++
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 34677889999999999999999999888999999999999999999999998 9999999999999995 778899999
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+.|++|.|+.+|+++++.++..|+|+|++|+.+++..+..+.+.|+++.|+.+|.++.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---------------------- 151 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---------------------- 151 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC----------------------
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCC----------------------
Confidence 9999999999999999999999999999999888888888999999999999997651
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..++..|+++|++++..+++.+..+.+.|+++.|+.++.
T Consensus 152 -----------------------------------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 152 -----------------------------------------EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190 (210)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHh
Confidence 135788999999999877899999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHH
Q 040681 398 KEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~ 415 (594)
+++++++..|+++|.+|+
T Consensus 191 ~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 191 HENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999886
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=200.10 Aligned_cols=230 Identities=19% Similarity=0.249 Sum_probs=198.7
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhh-CChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La-~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
...+.++++|++++ ++++..|+++|+++. .+++.+..+++.|++|.|+++|++++++++..++++|.+|+..+++.+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46899999999998 999999999997755 4677899999999999999999999999999999999999998889999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.+.|+++.|+.+|.++.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~------------------------------------------------------------- 109 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPN------------------------------------------------------------- 109 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSC-------------------------------------------------------------
T ss_pred HHHHcCCHHHHHHHHcCCC-------------------------------------------------------------
Confidence 9999999999999997752
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..|+++|++++.+.+.....+.+.|+++.|+.+|.+++..++..|+++|.||+ ..+++.+.. +
T Consensus 110 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-~------- 176 (252)
T 4db8_A 110 --EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQIQA-V------- 176 (252)
T ss_dssp --HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT---TSCHHHHHH-H-------
T ss_pred --HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCChHHHHH-H-------
Confidence 135788999999998655543488999999999999999999999999999999997 444433221 0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
.+.|+++.|+++|.++++.++..|+++|+|++. ++ ++.+.
T Consensus 177 ------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~---~~~~~ 216 (252)
T 4db8_A 177 ------------------------------------IDAGALPALVQLLSSPNEQILQEALWALSNIAS-GG---NEQKQ 216 (252)
T ss_dssp ------------------------------------HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT-SC---HHHHH
T ss_pred ------------------------------------HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc-CC---HHHHH
Confidence 135789999999999999999999999999986 33 57888
Q ss_pred HHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 517 AIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 517 ~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+.+.|+++.|++++.++++ +|..|+
T Consensus 217 ~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 217 AVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 89999999999999998877 888775
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=196.65 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=167.0
Q ss_pred ChHHHHHhhccCCCH--HHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH
Q 040681 199 GVPPLLKLLKETASS--EAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 199 ~I~~Lv~LL~~~~~~--~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~ 275 (594)
.+|+|+++|++++ + ++|..|+++|.+|+. +++++..|++.|+||+||++|+++++++++.|+|+|.||+..+++++
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999987 6 899999999999996 88899999999999999999999999999999999999998788999
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
..|.++|+|++|+++|.+.. +
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~---~-------------------------------------------------------- 108 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR---D-------------------------------------------------------- 108 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC---C--------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHHHccCC---C--------------------------------------------------------
Confidence 99999999999999997531 1
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh---h-------------CCHHHHHHHHHHHHHHHHHhc
Q 040681 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE---K-------------EQGELQFNCLMTIMEITAAAE 419 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~---~-------------~~~~v~~~A~~aL~nL~~~~~ 419 (594)
..++..++.+||+|+ ..++++..|++. +++.|+.++. + .+.+++++|+++|.||+ .
T Consensus 109 ---~~~~e~a~~aL~nLS-~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLs---s 180 (233)
T 3tt9_A 109 ---LETKKQITGLLWNLS-SNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMS---S 180 (233)
T ss_dssp ---HHHHHHHHHHHHHHH-TSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHT---T
T ss_pred ---HHHHHHHHHHHHHHH-cChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHh---c
Confidence 135788999999997 467888888874 7999998763 1 24589999999999998 5
Q ss_pred CCHHHHHHhhhcCChhhHHHHHHHHHHHhcC-----CChhhHHHHHHHHHHhhc
Q 040681 420 SNADLRRAAFKTNSPAAKAVVDQLLRVINDL-----DSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 420 ~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~-----~~~~v~~~a~~aL~~La~ 468 (594)
.+++.|+. +... .++|+.|+.+++.. .+...++.|+++|+||+-
T Consensus 181 ~~~~~R~~-~r~~----~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 181 AGADGRKA-MRRC----DGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp SCHHHHHH-HHTS----TTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHH-HHHC----CCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 56778884 5433 34889999998863 135788999999999984
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=199.59 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHH-hhccCCCHHHHHHHHHHH
Q 040681 157 WVWSYIAAIQMG------------QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLK-LLKETASSEAQSAAATAL 223 (594)
Q Consensus 157 ~i~~lv~~L~~~------------~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~-LL~~~~~~~v~e~A~~aL 223 (594)
.+.+.+..|.+. +.+.|..|+..|.+++.+ .++...+.+.|++|+|+. +|++++ +++++.|+|+|
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~-~~vr~~Aa~~L 106 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 455566666653 446899999999999975 678899999999999999 999998 99999999999
Q ss_pred HHhhC-ChhHHHHHHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCcc
Q 040681 224 YNIAN-DQERVRVIVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPR 301 (594)
Q Consensus 224 ~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 301 (594)
++++. ++..+..+++.|++|+|+++|+++ +..+++.|+|+|++|+.+++..++.|.+.|++++|+.+|.++.
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d------ 180 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV------ 180 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC------
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC------
Confidence 99998 567899999999999999999965 8999999999999999988888889999999999999997751
Q ss_pred CccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHH
Q 040681 302 ANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSR 381 (594)
Q Consensus 302 ~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~ 381 (594)
..++..|+++|.+++.++++.++
T Consensus 181 ---------------------------------------------------------~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 181 ---------------------------------------------------------QKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHhCChHHHH
Confidence 13578899999999988899999
Q ss_pred HHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 382 RISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 382 ~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
.+++.|+++.|+.+|.+++..+++.|+++|.||+
T Consensus 204 ~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=185.96 Aligned_cols=199 Identities=16% Similarity=0.245 Sum_probs=170.9
Q ss_pred hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh
Q 040681 196 EEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA 274 (594)
Q Consensus 196 ~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~ 274 (594)
..|+.++|+.+|++++ ++++..|+++|++|+. +++.+..+++.|++|.|+.+|+++++++++.|+++|++|+..++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3578999999999998 9999999999999995 7788999999999999999999999999999999999999888889
Q ss_pred HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCC
Q 040681 275 QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEK 354 (594)
Q Consensus 275 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~d 354 (594)
+..+.+.|+++.|+.+|.++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~----------------------------------------------------------- 109 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPN----------------------------------------------------------- 109 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSC-----------------------------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHcCCc-----------------------------------------------------------
Confidence 999999999999999997662
Q ss_pred hHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh
Q 040681 355 PEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP 434 (594)
Q Consensus 355 p~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~ 434 (594)
..++..|+++|++++.++++.++.+.+.|+++.|+.+|.+++..++..|+++|.||+ ..++..+.. +..
T Consensus 110 ----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~---~~~~~~~~~-~~~--- 178 (210)
T 4db6_A 110 ----EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA---SGGNEQKQA-VKE--- 178 (210)
T ss_dssp ----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH---TSCHHHHHH-HHH---
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH---cCCcHHHHH-HHH---
Confidence 135778999999999888888889999999999999999999999999999999998 555666662 332
Q ss_pred hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 435 AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 435 ~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
.++++.|++++.+.+ +.+++.|+.+|++|+.
T Consensus 179 --~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 179 --AGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp --TTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred --CCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 237788888887554 7788888888888763
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-22 Score=200.43 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVN-VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~-lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL 291 (594)
.+-+..|+..|.+++.+.++...+++.|++|+|+. +|+++++++++.|+|+|++++.+++.+|+.+.+.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 56788899999999999899999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHH
Q 040681 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWM 371 (594)
Q Consensus 292 ~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~ 371 (594)
.+++ + ..++..|++||++
T Consensus 134 ~~~~---~-----------------------------------------------------------~~v~~~A~~ALsn 151 (296)
T 1xqr_A 134 DRDA---C-----------------------------------------------------------DTVRVKALFAISC 151 (296)
T ss_dssp HHCS---C-----------------------------------------------------------HHHHHHHHHHHHH
T ss_pred ccCC---C-----------------------------------------------------------HHHHHHHHHHHHH
Confidence 7641 1 1347889999999
Q ss_pred hccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC
Q 040681 372 LARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD 451 (594)
Q Consensus 372 L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~ 451 (594)
++.+++...+.+.+.|+++.|+.+|.+++..++..|+|+|.+|+.. +++.++. +
T Consensus 152 l~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~---~~~~~~~-v---------------------- 205 (296)
T 1xqr_A 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHKGT-L---------------------- 205 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHH-H----------------------
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---ChHHHHH-H----------------------
Confidence 9988888888899999999999999999999999999999999843 3333331 1
Q ss_pred ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhc
Q 040681 452 SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLL 531 (594)
Q Consensus 452 ~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL 531 (594)
.+.|++++|+.+|.+++..++..|+++|.|++.+ . ....+.. .. +-..|.++|
T Consensus 206 ---------------------v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~-~---~~~~~~~-~~-~~~~l~~lL 258 (296)
T 1xqr_A 206 ---------------------CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD-F---PQGVREC-RE-PELGLEELL 258 (296)
T ss_dssp ---------------------HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT-C---HHHHHHH-HC-GGGCHHHHH
T ss_pred ---------------------HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC-C---hhHHHHH-hc-cHHHHHHHH
Confidence 1468899999999999999999999999999872 2 1221211 11 112344443
Q ss_pred cCCchHhHhHHHHHHHHHHHHHhhhccccccc-cchHHHHHHHHHHhccccccc
Q 040681 532 RGNDRTQLHGLALEQARVLTALEGADRTVVAQ-HPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 532 ~~~~~vq~~Al~l~~~~~l~~Le~~~~~~~~q-~~~~~~l~~~a~~~l~~~~~~ 584 (594)
+. . + ..+| +++.++.|..|..+|+.||+.
T Consensus 259 ~~---------------~---~------~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 259 RH---------------R---C------QLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HH---------------H---H------HHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HH---------------H---H------HHccchHHHHHHHHHHHHHHHHHcCC
Confidence 21 0 1 1234 345899999999999999973
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-21 Score=211.76 Aligned_cols=292 Identities=17% Similarity=0.164 Sum_probs=221.2
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCch--------------------------------------hHHHHHhc
Q 040681 157 WVWSYIAAIQM-GQLSDRIEAAIELASLAKDNDR--------------------------------------NKKIIVEE 197 (594)
Q Consensus 157 ~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~--------------------------------------~~~~i~~~ 197 (594)
.+..|+..+.. ++......++..|.|++...+. +++.+++.
T Consensus 377 ~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea 456 (778)
T 3opb_A 377 FTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT 456 (778)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC
Confidence 35567777774 6777888888888888773221 56788899
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHH---HHHHHHHHHHHHhhc-CHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMK---VQIQVASLVARMAEH-DAL 273 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~---v~~~aa~aL~~La~~-~~~ 273 (594)
|+||+|+.++++++ +.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. +++.|+.+|++|+.. +|.
T Consensus 457 GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLS-PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp THHHHHHHHGGGSC-HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999998 9999999999999999999999999999999999999988544 899999999999854 432
Q ss_pred hHHHHHH---cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccc
Q 040681 274 AQDDFAR---ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350 (594)
Q Consensus 274 ~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~ 350 (594)
..|.. .|+|++|+.+|..++..... +++
T Consensus 536 --~~f~~~~~~~aI~pLv~LL~~~~~~~~~-------~l~---------------------------------------- 566 (778)
T 3opb_A 536 --LIFKKYSALNAIPFLFELLPRSTPVDDN-------PLH---------------------------------------- 566 (778)
T ss_dssp --HHSSSSCSTTHHHHHHHTSCCSSSCSSC-------C------------------------------------------
T ss_pred --HHcCCCccccchHHHHHHcCCCCCcccc-------ccc----------------------------------------
Confidence 23321 38899999999742111000 000
Q ss_pred ccCChHHHHHHHHHHHHHHHHhccCC----hhhHHHHHhh-CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHH
Q 040681 351 ENEKPEVKIKLKIACAEALWMLARGS----VANSRRISET-KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLR 425 (594)
Q Consensus 351 ~~~dp~~k~~l~~~a~~aL~~L~~~~----~~~~~~i~e~-g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r 425 (594)
.+++.. ...+..|+.||.||+..+ ++.++.|+.+ |+++.|..+|.+++..+|..|+++|+||+. +++.+
T Consensus 567 -~~~~~~-~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~----~~e~i 640 (778)
T 3opb_A 567 -NDEQIK-LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS----HPLTI 640 (778)
T ss_dssp --CCCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT----SGGGT
T ss_pred -cccccc-HHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC----CcHHH
Confidence 000000 012567899999999765 3568888885 999999999999999999999999999983 33321
Q ss_pred -HHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-h-----hccHHHHHHhccC--CCHHHHHHH
Q 040681 426 -RAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-E-----TRVIGPLVAHLSH--RNQEVATEA 496 (594)
Q Consensus 426 -~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~-----~~~i~~Lv~lL~~--~~~~v~~~A 496 (594)
+..|....|...+.++.|+.++++.+ .+++..|+++|.|++...+.. + .++++.++.+|.+ .+.+++..+
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~ 719 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRL 719 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence 11222233333445899999998765 999999999999997544432 2 2789999999988 899999999
Q ss_pred HHHHHHhcC
Q 040681 497 AIALQKFAS 505 (594)
Q Consensus 497 a~aL~nl~~ 505 (594)
+.++.|++.
T Consensus 720 ~~~l~NL~~ 728 (778)
T 3opb_A 720 LMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999985
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=209.60 Aligned_cols=315 Identities=13% Similarity=0.136 Sum_probs=243.9
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CChHHHHHhhcc-CCCHHHHHHHHHHHHHhhCCh
Q 040681 153 PMLSWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE-GGVPPLLKLLKE-TASSEAQSAAATALYNIANDQ 230 (594)
Q Consensus 153 ~i~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~-g~I~~Lv~LL~~-~~~~~v~e~A~~aL~~La~~~ 230 (594)
.+..++..++..|..++.+.+..|++.|..++.+ +..|..+++. |.+..|+++++. .+ ..+...++.+|.||+.+.
T Consensus 331 si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~ 408 (778)
T 3opb_A 331 NLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLP 408 (778)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCC
Confidence 3444555667778777777899999999999987 7888888765 559999999996 45 789999999999998722
Q ss_pred h---------------------------------------HHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 231 E---------------------------------------RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 231 ~---------------------------------------~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
+ ++..+++.|++|+|+.+++++++.+++.++|+|.+|+. +
T Consensus 409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d 487 (778)
T 3opb_A 409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-S 487 (778)
T ss_dssp CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-S
T ss_pred cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-C
Confidence 1 45677799999999999999999999999999999997 5
Q ss_pred HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccc
Q 040681 272 ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRE 351 (594)
Q Consensus 272 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~ 351 (594)
+.+|..+++.|++++|+.+|.+++..++
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~---------------------------------------------------- 515 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGE---------------------------------------------------- 515 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CC----------------------------------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcch----------------------------------------------------
Confidence 7899999999999999999987731110
Q ss_pred cCChHHHHHHHHHHHHHHHHhcc-CChhhHHHHH---hhCcHHHHHHHhhh--CCH------------HHHHHHHHHHHH
Q 040681 352 NEKPEVKIKLKIACAEALWMLAR-GSVANSRRIS---ETKGLLCLAKLVEK--EQG------------ELQFNCLMTIME 413 (594)
Q Consensus 352 ~~dp~~k~~l~~~a~~aL~~L~~-~~~~~~~~i~---e~g~l~~L~~LL~~--~~~------------~v~~~A~~aL~n 413 (594)
..+..|+.||.++.. .++.. .+- -.|++++|+.||.. +.. -.+.+|+.||.|
T Consensus 516 --------~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTN 585 (778)
T 3opb_A 516 --------PIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTN 585 (778)
T ss_dssp --------HHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHH
Confidence 237789999999873 34443 221 13899999999983 211 127799999999
Q ss_pred HHHHhcCC-HHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-hh----------ccHHHH
Q 040681 414 ITAAAESN-ADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-ET----------RVIGPL 481 (594)
Q Consensus 414 L~~~~~~~-~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~~----------~~i~~L 481 (594)
|+....+. .++|+. +... .++++.|..+|.+.+ ..++..|+.++.||+...... +. +-+++|
T Consensus 586 LAs~~~n~~E~~r~~-Ii~~----~ga~~~L~~LL~s~n-~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lL 659 (778)
T 3opb_A 586 LASSETSDGEEVCKH-IVST----KVYWSTIENLMLDEN-VPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNIL 659 (778)
T ss_dssp HHHCCSHHHHHHHHH-HHHS----HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHH
T ss_pred HhcCCcccchHHHHH-HHHh----cCHHHHHHHHHhCCC-HHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHH
Confidence 98443110 356663 3321 248899999998755 899999999999999755432 11 237899
Q ss_pred HHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHc-CChHHHHHhccC--Cch-HhHhHH
Q 040681 482 VAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF-NAVPPLMRLLRG--NDR-TQLHGL 542 (594)
Q Consensus 482 v~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~-g~i~~Lv~lL~~--~~~-vq~~Al 542 (594)
|.++++++.++|++|+|||+|+++ .+ +..++.+++. +|++.|+.++.. +++ +|..++
T Consensus 660 V~Ll~s~D~~~r~AAagALAnLts-~~---~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~ 720 (778)
T 3opb_A 660 VKLLQLSDVESQRAVAAIFANIAT-TI---PLIAKELLTKKELIENAIQVFADQIDDIELRQRLL 720 (778)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHH-HC---HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcC-CC---hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHH
Confidence 999999999999999999999965 22 4567888876 899999999997 666 877765
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-13 Score=143.37 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=230.3
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhC-Chh-
Q 040681 156 SWVWSYIAAIQMG-QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIAN-DQE- 231 (594)
Q Consensus 156 ~~i~~lv~~L~~~-~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~-~~~- 231 (594)
..|..|+.+|++. -.+.|+.|+..|+.++++ ++ .-+..+|+++|+..|+.. ++.++...+..+|.++-. +++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YR-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TT-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hH-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4577788888754 678999999999999865 33 345578999999999875 348899999999988654 322
Q ss_pred ----------------HHHHHH-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-hHHHHHHc-CChhhHHHhhh
Q 040681 232 ----------------RVRVIV-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL-AQDDFARE-NVIRPLVTLLS 292 (594)
Q Consensus 232 ----------------~~~~iv-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~-~~~~i~~~-g~i~~Lv~lL~ 292 (594)
..+.++ +.+.|+.|+.+|++.+-.+|..+...|..|+.+.+. .++.|... +||+.||.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 122343 578899999999999999999999999999998877 89989865 89999999997
Q ss_pred cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHh
Q 040681 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWML 372 (594)
Q Consensus 293 ~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L 372 (594)
+.. ..++..+...|.+|
T Consensus 177 d~r---------------------------------------------------------------E~iRneallLL~~L 193 (651)
T 3grl_A 177 DSR---------------------------------------------------------------EVIRNDGVLLLQAL 193 (651)
T ss_dssp CSS---------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred Cch---------------------------------------------------------------HHHHHHHHHHHHHH
Confidence 651 13467788999999
Q ss_pred ccCChhhHHHHHhhCcHHHHHHHhhhCCH----HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 040681 373 ARGSVANSRRISETKGLLCLAKLVEKEQG----ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN 448 (594)
Q Consensus 373 ~~~~~~~~~~i~e~g~l~~L~~LL~~~~~----~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~ 448 (594)
+.++.++++.++-+|+++.|+.+++.+.. .+...|+..|.||. ..|+..+. .|...+ +++.|..+++
T Consensus 194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL---r~N~sNQ~-~FrEt~-----~i~~L~~LL~ 264 (651)
T 3grl_A 194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL---KNNNSNQN-FFKEGS-----YIQRMKPWFE 264 (651)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH---TTCHHHHH-HHHHTT-----CGGGGGGGGC
T ss_pred hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH---hcCHHHHH-HHHHcC-----CHHHHHHHhC
Confidence 99999999999999999999999986543 67788999999888 77887888 577544 5677777776
Q ss_pred cCCCh---h--hHHH---HHHHHHHhhcCCh------hh-----hhccHHHHHHhccCC--CHHHHHHHHHHHHHhcCCC
Q 040681 449 DLDSP---T--LQIP---AIKSIGSLARTFP------AR-----ETRVIGPLVAHLSHR--NQEVATEAAIALQKFASPE 507 (594)
Q Consensus 449 s~~~~---~--v~~~---a~~aL~~La~~~~------~~-----~~~~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~~~ 507 (594)
..+.. . .... +..+++-|..... .. +.|+++.|++++... ...++.+|..+++.+.. +
T Consensus 265 ~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir-g 343 (651)
T 3grl_A 265 VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR-G 343 (651)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT-T
T ss_pred CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh-C
Confidence 43311 1 1222 5566666665422 11 238899999998654 67899999999999988 6
Q ss_pred CccchhhHHHHHHcC-----ChHHHHHh----ccCCch--HhHhHH
Q 040681 508 NFLCTEHSKAIIEFN-----AVPPLMRL----LRGNDR--TQLHGL 542 (594)
Q Consensus 508 ~~l~~~~~~~i~~~g-----~i~~Lv~l----L~~~~~--vq~~Al 542 (594)
| +..+..+.+.. ..|.++.+ +.+... +|.+|+
T Consensus 344 N---~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~ 386 (651)
T 3grl_A 344 C---QVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386 (651)
T ss_dssp C---HHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred C---HHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHH
Confidence 6 47777776543 34455554 544443 565555
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-13 Score=132.35 Aligned_cols=239 Identities=14% Similarity=0.110 Sum_probs=182.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..++..|.++++.+|..|+++|..+.. .+.++.|+++|++++ +.++..|+++|+.+...+.....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~~~~~-- 90 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDN-- 90 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccchH--
Confidence 5567888999999999999999998862 246899999999988 99999999999999864332211
Q ss_pred hcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIV-NVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv-~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
.++.|. .+++++++.++..++++|.++...++... ...++.|+.+|.++.
T Consensus 91 ---l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~--------------------- 141 (280)
T 1oyz_A 91 ---VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS--------------------- 141 (280)
T ss_dssp ---HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC---------------------
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC---------------------
Confidence 233344 24567899999999999999985443221 124677888776541
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|+++. ++ ++++.|+.++
T Consensus 142 ------------------------------------------~~vR~~a~~aL~~~~--~~---------~~~~~L~~~l 168 (280)
T 1oyz_A 142 ------------------------------------------TNVRRATAFAISVIN--DK---------ATIPLLINLL 168 (280)
T ss_dssp ------------------------------------------HHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred ------------------------------------------HHHHHHHHHHHHhcC--CH---------HHHHHHHHHH
Confidence 134677888888873 32 4899999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
.++++.++..|+++|.++. ..++ .+++.|+.++.+.+ +.++..|+.+|+++. ...
T Consensus 169 ~d~~~~vr~~a~~aL~~~~---~~~~---------------~~~~~L~~~l~d~~-~~vR~~A~~aL~~~~------~~~ 223 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININK---YDNS---------------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK------DKR 223 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHT---CCCH---------------HHHHHHHHHTTCSC-HHHHHHHHHHHHHTT------CGG
T ss_pred cCCCHHHHHHHHHHHHhhc---cCcH---------------HHHHHHHHHhcCCC-HHHHHHHHHHHHHhC------CHh
Confidence 9999999999999997663 2222 26677888887655 899999999999987 357
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
+++.|+.+|.+.+ ++..|+++|+++.. ...++.|.+++...
T Consensus 224 ~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 224 VLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLPVLDTMLYKF 264 (280)
T ss_dssp GHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHHHHHHHHTTS
T ss_pred hHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhHHHHHHHhcC
Confidence 8999999998755 89999999999844 25788999998743
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-12 Score=138.18 Aligned_cols=292 Identities=14% Similarity=0.141 Sum_probs=219.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCch-hHHHHHhc-CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH-H
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDR-NKKIIVEE-GGVPPLLKLLKETASSEAQSAAATALYNIANDQER-V 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~-~~~~i~~~-g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~-~ 233 (594)
.|.-++.+|.+.+...|..++..|..++..++. ++++|... +||+.|+.+|++.. +.+|.+++..|.+|+.+... +
T Consensus 123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCCHHHH
Confidence 355578899999999999999999999988777 89999965 99999999999988 99999999999999985555 5
Q ss_pred HHHHhcCCHHHHHHhhcCC----CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLSDS----IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~----~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
+.+.-+|+++.|+.+++.. ...+.+.+..+|.||..+++.+|..|.+.|+++.|..+|..+.. ..
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~--~~--------- 270 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE--NS--------- 270 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC--SS---------
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc--cc---------
Confidence 5555679999999999864 34788999999999999999999999999999999999875421 10
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC------ChhhHHHH
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG------SVANSRRI 383 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~------~~~~~~~i 383 (594)
.+++.. ..-...+...+..|..+ ...++..+
T Consensus 271 ------------------------------------------~W~~Qk-~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~ 307 (651)
T 3grl_A 271 ------------------------------------------GWSAQK-VTNLHLMLQLVRVLVSPNNPPGATSSCQKAM 307 (651)
T ss_dssp ------------------------------------------CCCHHH-HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred ------------------------------------------ccHHHH-HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 011110 00011244555556544 24578899
Q ss_pred HhhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcC----ChhhHHHHHHHHHHHhcCCChhhHH
Q 040681 384 SETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTN----SPAAKAVVDQLLRVINDLDSPTLQI 457 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~----~~~~~~~v~~Ll~lL~s~~~~~v~~ 457 (594)
.+.|++.+|++++... ...++..|..++..+. .+|+.++. .|..- .|..+.++..|+.++.+.....+|.
T Consensus 308 ~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~i---rgN~~~Q~-~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~ 383 (651)
T 3grl_A 308 FQCGLLQQLCTILMATGVPADILTETINTVSEVI---RGCQVNQD-YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRC 383 (651)
T ss_dssp HHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH---TTCHHHHH-HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHH
T ss_pred HHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHH---hCCHHHHH-HHhhccCCCCCCcChHHHHHHHHhcccccHHHHH
Confidence 9999999999999765 4678888999998766 78888888 45421 2233557777888887777788999
Q ss_pred HHHHHHHHhhcCChhhhhccH------------------HHHHHhccCCCHHHHHHHHHHHHHhcCCCC
Q 040681 458 PAIKSIGSLARTFPARETRVI------------------GPLVAHLSHRNQEVATEAAIALQKFASPEN 508 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~~~~i------------------~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~ 508 (594)
.|+.++.+.....+..+..++ ..|...|-+.++.-.--|+.+|..+.. +|
T Consensus 384 Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~-~n 451 (651)
T 3grl_A 384 AVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ-EN 451 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc-CC
Confidence 999999998866553332111 123444555666555558888888877 55
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=130.54 Aligned_cols=231 Identities=15% Similarity=0.101 Sum_probs=171.8
Q ss_pred HhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh
Q 040681 195 VEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA 274 (594)
Q Consensus 195 ~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~ 274 (594)
.+.+.++.|+++|++++ +.++..|+++|+++.. .++++.|+.+|+++++.++..++++|.++.....
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--
Confidence 34578999999999988 9999999999999873 2468999999999999999999999999864221
Q ss_pred HHHHHHcCChhhHHHhhh----cCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCcccccc
Q 040681 275 QDDFARENVIRPLVTLLS----FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDR 350 (594)
Q Consensus 275 ~~~i~~~g~i~~Lv~lL~----~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~ 350 (594)
.++.++.+|. .+. +
T Consensus 87 --------~~~~l~~~L~~~~~~d~---~--------------------------------------------------- 104 (280)
T 1oyz_A 87 --------CEDNVFNILNNMALNDK---S--------------------------------------------------- 104 (280)
T ss_dssp --------THHHHHHHHHHHHHHCS---C---------------------------------------------------
T ss_pred --------cchHHHHHHHHHHhcCC---C---------------------------------------------------
Confidence 2333443332 210 1
Q ss_pred ccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhh
Q 040681 351 ENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFK 430 (594)
Q Consensus 351 ~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~ 430 (594)
..++..++.+|.+++.+++.. ...+++.|..++.++++.++..|+++|.++. ++
T Consensus 105 --------~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~-----~~-------- 158 (280)
T 1oyz_A 105 --------ACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN-----DK-------- 158 (280)
T ss_dssp --------HHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------------
T ss_pred --------HHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-----CH--------
Confidence 135778899999986433321 2246899999999999999999999997653 11
Q ss_pred cCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc
Q 040681 431 TNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFL 510 (594)
Q Consensus 431 ~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l 510 (594)
..++.|+.++.+.+ +.++..|+.+|+.+... ...+++.|+.+|++.++.|+..|+++|+++..
T Consensus 159 -------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----- 221 (280)
T 1oyz_A 159 -------ATIPLLINLLKDPN-GDVRNWAAFAININKYD----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----- 221 (280)
T ss_dssp -------CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC-----
T ss_pred -------HHHHHHHHHHcCCC-HHHHHHHHHHHHhhccC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----
Confidence 15677888887655 88999999999998532 23678999999999999999999999999853
Q ss_pred chhhHHHHHHcCChHHHHHhccCCchHhHhHH----HHHHHHHHHHHh
Q 040681 511 CTEHSKAIIEFNAVPPLMRLLRGNDRTQLHGL----ALEQARVLTALE 554 (594)
Q Consensus 511 ~~~~~~~i~~~g~i~~Lv~lL~~~~~vq~~Al----~l~~~~~l~~Le 554 (594)
..+++.|+.+|..++ ++..|. .+...+++..|.
T Consensus 222 ----------~~~~~~L~~~l~d~~-vr~~a~~aL~~i~~~~~~~~L~ 258 (280)
T 1oyz_A 222 ----------KRVLSVLCDELKKNT-VYDDIIEAAGELGDKTLLPVLD 258 (280)
T ss_dssp ----------GGGHHHHHHHHTSSS-CCHHHHHHHHHHCCGGGHHHHH
T ss_pred ----------HhhHHHHHHHhcCcc-HHHHHHHHHHhcCchhhhHHHH
Confidence 357899999998654 555544 333334455554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-10 Score=128.91 Aligned_cols=322 Identities=16% Similarity=0.165 Sum_probs=216.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhc
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSE 239 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~ 239 (594)
...+...+..+|..|+.+|..++..-+. .......+|.|++++++++ ++++..|+++|+.++.. ++.+....-.
T Consensus 248 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 248 RQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 3455667788899999999888753111 1223456899999999888 99999999999999862 2222222334
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
..+|.+..++++.+..+|..++++|..++..-. ...+ ....++.|..+++++ +
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~-~~~l~p~l~~~l~d~----~-------------------- 376 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILG--KDNT-IEHLLPLFLAQLKDE----C-------------------- 376 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHHH-HHHTHHHHHHHHTCS----C--------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--HhHH-HHHHHHHHHHHhCCC----c--------------------
Confidence 568889999999999999999999999986311 1111 223677777777543 1
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
..++..++.+|..+...... .......+|.|..++.+.
T Consensus 377 ---------------------------------------~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~ 414 (588)
T 1b3u_A 377 ---------------------------------------PEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDA 414 (588)
T ss_dssp ---------------------------------------HHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCS
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCC
Confidence 12355556666655421110 011234678888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--hhcc
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--ETRV 477 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--~~~~ 477 (594)
+..++..++.+|..++..... .+. .+.+++.+++++.+.+ ..+++.|+.+++.++...... ...+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~-------~~~-----~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~l 481 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGV-------EFF-----DEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHATI 481 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCG-------GGC-----CHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHcCH-------HHH-----HHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 889999999999887632211 011 1347788888887654 889999999999998654322 2367
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH----HHH-------
Q 040681 478 IGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL----ALE------- 545 (594)
Q Consensus 478 i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al----~l~------- 545 (594)
+|.|+.++.+.+..++..++++++.++. ...........++.|++++...++ ++..++ .+.
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~-------~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSE-------VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 8888888889999999999999999864 112222334578999999988777 887665 221
Q ss_pred -HHHHHHHHhhhccccccccchHHHHHHHHHHhcc
Q 040681 546 -QARVLTALEGADRTVVAQHPELKELVSEALYHLN 579 (594)
Q Consensus 546 -~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~ 579 (594)
...++..|...... .|++++....+|+..++
T Consensus 555 ~~~~~~p~l~~l~~d---~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 555 LQSEVKPILEKLTQD---QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCC---CchhHHHHHHHHHHHhh
Confidence 12344444432222 37888998888887764
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-11 Score=114.45 Aligned_cols=186 Identities=22% Similarity=0.244 Sum_probs=152.5
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
.+.++.|+++|++++ +.++..|+.+|+.+.. ..+++.|+.+|+++++.++..++++|.++..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 467999999999888 9999999999998765 3579999999999999999999999999853
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.++++.|+.+|.++.
T Consensus 80 ----~~~~~~L~~~l~~~~------------------------------------------------------------- 94 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDED------------------------------------------------------------- 94 (211)
T ss_dssp ----GGGHHHHHHHTTCSS-------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHcCCC-------------------------------------------------------------
Confidence 246888888886541
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..++.+|..+ +++ ++++.|+.+|.++++.++..|+++|.++. ++
T Consensus 95 --~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~-------------- 142 (211)
T 3ltm_A 95 --GWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDWFVRIAAAFALGEIG-----DE-------------- 142 (211)
T ss_dssp --HHHHHHHHHHHHHH--CCG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----CG--------------
T ss_pred --HHHHHHHHHHHHHh--CcH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CH--------------
Confidence 13477888999988 333 37899999999999999999999997663 11
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
..++.|..++++.+ +.++..|+.+|+.+. ...+++.|..++++.++.|+..|..+|.++..
T Consensus 143 -~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 143 -RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp -GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 15677888886554 899999999999996 35688999999999999999999999999865
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-11 Score=112.68 Aligned_cols=185 Identities=21% Similarity=0.235 Sum_probs=153.1
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
.+..+.++++|++++ +.++..|+++|+.+.. .++++.|+++|+++++.++..++++|.++..
T Consensus 13 ~~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 356889999999998 9999999999998865 3578999999999999999999999998843
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
..+++.|+.+|.+..
T Consensus 75 ----~~~~~~L~~~l~d~~------------------------------------------------------------- 89 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDED------------------------------------------------------------- 89 (201)
T ss_dssp ----GGGHHHHHHHTTCSS-------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHcCCC-------------------------------------------------------------
Confidence 246888888886541
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
..++..|+++|+.+ ++++ +++.|..+|.++++.++..|+++|.++. ++
T Consensus 90 --~~vr~~a~~aL~~~--~~~~---------~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----~~-------------- 137 (201)
T 3ltj_A 90 --GWVRQSAAVALGQI--GDER---------AVEPLIKALKDEDWFVRIAAAFALGEIG-----DE-------------- 137 (201)
T ss_dssp --HHHHHHHHHHHHHH--CCGG---------GHHHHHHHTTCSSHHHHHHHHHHHHHHT-----CG--------------
T ss_pred --HHHHHHHHHHHHHh--CcHH---------HHHHHHHHHcCCCHHHHHHHHHHHHHhC-----CH--------------
Confidence 13477889999988 3443 7899999999999999999999997663 11
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
..++.|..++.+.+ +.++..|+.+|+.+. ...+++.|..++.+.++.|+..|..+|.++-
T Consensus 138 -~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 -RAVEPLIKALKDED-GWVRQSAADALGEIG------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 15677888887654 899999999999995 3468899999999999999999999999874
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-10 Score=124.11 Aligned_cols=195 Identities=13% Similarity=0.151 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 361 LKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
++..++.+|..++..-. ........+|.|..++.+++++++..++.++..+..... .... .+.++
T Consensus 340 vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~-----------~~~~l 404 (588)
T 1b3u_A 340 VKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-IRQL-----------SQSLL 404 (588)
T ss_dssp HHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-HHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-HHHH-----------HHHHH
Confidence 46667777777642111 111223478999999998889999999999988774321 1111 13377
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh--hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR--ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~--~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
+.+..++.+.+ +.++..++.+|+.++...... ...+++.+..+|.+.+..|+..|+.+|..++.. .....
T Consensus 405 p~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-------~~~~~ 476 (588)
T 1b3u_A 405 PAIVELAEDAK-WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK-------FGKEW 476 (588)
T ss_dssp HHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHH
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-------hCchh
Confidence 78888876544 899999999999998532211 225789999999999999999999999999751 11112
Q ss_pred HHcCChHHHHHhccCCch-HhHhHH----HHHH--------HHHHHHHhhhccccccccchHHHHHHHHHHhcccc
Q 040681 519 IEFNAVPPLMRLLRGNDR-TQLHGL----ALEQ--------ARVLTALEGADRTVVAQHPELKELVSEALYHLNLY 581 (594)
Q Consensus 519 ~~~g~i~~Lv~lL~~~~~-vq~~Al----~l~~--------~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~~ 581 (594)
.....+|.|.+++...+. ++..++ .++. ..++..|....+ -.++.+|.-..+++..+-.+
T Consensus 477 ~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 477 AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHH
Confidence 234577888888876666 776665 2221 122222221111 12477888888888777543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-10 Score=108.84 Aligned_cols=186 Identities=25% Similarity=0.249 Sum_probs=149.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+..++..|.++++.+|..|+..|..+.. .++++.|+++|++++ +.++..|+++|+.+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--------
Confidence 46678889999999999999999998753 267999999999988 9999999999999864
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
.++++.|+.+|+++++.++..++++|.++.. ...++.|+.+|.++.
T Consensus 80 --~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~--------------------- 125 (211)
T 3ltm_A 80 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDED--------------------- 125 (211)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS---------------------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCC---------------------
Confidence 3578999999999999999999999999853 236788888885541
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|..+ +.+ .+++.|..++
T Consensus 126 ------------------------------------------~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l 152 (211)
T 3ltm_A 126 ------------------------------------------WFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152 (211)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHH--CCG---------GGHHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHHHHHc--CCH---------HHHHHHHHHH
Confidence 13477889999998 333 3789999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++++.++..|+.+|..+. .+ ..++.|..++++.+ +.++..|..+|+++....
T Consensus 153 ~d~~~~vr~~a~~aL~~~~-----~~---------------~~~~~L~~~l~d~~-~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIG-----GE---------------RVRAAMEKLAETGT-GFARKVAVNYLETHKSFN 205 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC-----SH---------------HHHHHHHHHHHHCC-HHHHHHHHHHHHC-----
T ss_pred cCCCHHHHHHHHHHHHHhC-----ch---------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCC
Confidence 9999999999999997763 22 15667777887665 899999999999988543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.6e-10 Score=104.81 Aligned_cols=183 Identities=25% Similarity=0.263 Sum_probs=149.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
....++..|.++++.+|..|+..|..+.. .+.++.|+++|++++ +.++..|+++|+.+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--------
Confidence 45668899999999999999999997753 257899999999888 9999999999999864
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
..+++.|+.+|.++++.++..|+++|.++.. ..+++.|+.+|.++.
T Consensus 75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~--------------------- 120 (201)
T 3ltj_A 75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDED--------------------- 120 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS---------------------
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCC---------------------
Confidence 3578999999999999999999999999843 236788888885441
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|..+ +.+ .+++.|..++
T Consensus 121 ------------------------------------------~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l 147 (201)
T 3ltj_A 121 ------------------------------------------WFVRIAAAFALGEI--GDE---------RAVEPLIKAL 147 (201)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHH--TCG---------GGHHHHHHHT
T ss_pred ------------------------------------------HHHHHHHHHHHHHh--CCH---------HHHHHHHHHH
Confidence 13477889999988 333 3789999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.++++.++..|+++|..+. ++ ..++.|..++.+.+ +.++..|..+|+++.
T Consensus 148 ~d~~~~vr~~A~~aL~~~~-----~~---------------~~~~~L~~~l~d~~-~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 148 KDEDGWVRQSAADALGEIG-----GE---------------RVRAAMEKLAETGT-GFARKVAVNYLETHK 197 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC-----SH---------------HHHHHHHHHHHHCC-HHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhC-----ch---------------hHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence 9999999999999997662 22 15667777887655 899999999999875
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-10 Score=131.13 Aligned_cols=302 Identities=11% Similarity=0.081 Sum_probs=197.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHH-H---HhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKI-I---VEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~-i---~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~ 232 (594)
++..++..+.+++...+..|+.+|..++.+.+..-.. . .-...+|.|++++++++ +.++..|+++|.++......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccH
Confidence 5667888889999999999999999998754332110 0 01235788888888887 99999999999988763221
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
...-.-...++.+..++.+++.+++..++++|.+++...++.-.... .+.++.++.++.+.
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~------------------ 268 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ------------------ 268 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS------------------
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC------------------
Confidence 11000124578888889999999999999999999987653211110 12344444444332
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHH--hhCcHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRIS--ETKGLL 390 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~--e~g~l~ 390 (594)
+ ..++..|+..+..++.. ...++.+. -...++
T Consensus 269 -----------------------------------------~----~~vr~~a~e~l~~l~~~-~~~~~~~~~~~~~l~p 302 (852)
T 4fdd_A 269 -----------------------------------------D----ENVALEACEFWLTLAEQ-PICKDVLVRHLPKLIP 302 (852)
T ss_dssp -----------------------------------------S----HHHHHHHHHHHHHHTTS-TTHHHHHTTTHHHHHH
T ss_pred -----------------------------------------c----HHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHH
Confidence 1 12456677777777532 22222111 123566
Q ss_pred HHHHHhh----------hC------------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh
Q 040681 391 CLAKLVE----------KE------------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN 448 (594)
Q Consensus 391 ~L~~LL~----------~~------------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~ 448 (594)
.++..+. .+ +..++..|+.+|..++.... .. ..+.+++.+...+.
T Consensus 303 ~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~------------~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DE------------LLPHILPLLKELLF 369 (852)
T ss_dssp HHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GG------------GHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HH------------HHHHHHHHHHHHhc
Confidence 7766662 11 12468888899988874332 11 12347778888887
Q ss_pred cCCChhhHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCCh
Q 040681 449 DLDSPTLQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAV 524 (594)
Q Consensus 449 s~~~~~v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i 524 (594)
+.+ +.+++.|+.+|++++...... -..+++.|+.+|++.++.|+..|+|+|++++.. . ........-.+.+
T Consensus 370 ~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~-~---~~~~~~~~~~~ll 444 (852)
T 4fdd_A 370 HHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW-V---VSQPPDTYLKPLM 444 (852)
T ss_dssp CSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH-H---HHSCTTTTHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-h---ccchHHHHHHHHH
Confidence 654 999999999999999755421 126789999999999999999999999998751 0 0000001112467
Q ss_pred HHHHHhccCCch-HhHhHH
Q 040681 525 PPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 525 ~~Lv~lL~~~~~-vq~~Al 542 (594)
+.|++.|..+++ +|..|+
T Consensus 445 ~~L~~~L~d~~~~vr~~a~ 463 (852)
T 4fdd_A 445 TELLKRILDSNKRVQEAAC 463 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 888888877776 888766
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-09 Score=122.37 Aligned_cols=302 Identities=14% Similarity=0.146 Sum_probs=201.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~ 235 (594)
.+..+...|.+.++.+|..|+.+|..+...+++.. .+.+.++.|.++|.+++ +.++..|+++|+.++.+.. ....
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence 35557778889999999999999999998766532 33577899999999888 9999999999999987432 1000
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQI 315 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~ 315 (594)
-...+.++.|++.+.+.++-.+.....+|.+++..++.... ..++.+..+|++.+ .
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~---~---------------- 253 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHAN---S---------------- 253 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSST---T----------------
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCC---h----------------
Confidence 00122366777777777888888888888888754432211 23555555554331 0
Q ss_pred hhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC---ChhhHHHHHhhCcHHHH
Q 040681 316 NKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG---SVANSRRISETKGLLCL 392 (594)
Q Consensus 316 ~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~---~~~~~~~i~e~g~l~~L 392 (594)
.+...|++++..+... +++..+.+ -.++.+.|
T Consensus 254 --------------------------------------------~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L 288 (591)
T 2vgl_B 254 --------------------------------------------AVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPL 288 (591)
T ss_dssp --------------------------------------------HHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHH
Confidence 2355677777777421 23322222 23455667
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHh---------------cCCHHHHHHhhh-----cCChhhHHHHHHHHHHHhcCCC
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAA---------------ESNADLRRAAFK-----TNSPAAKAVVDQLLRVINDLDS 452 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~---------------~~~~~~r~~~~~-----~~~~~~~~~v~~Ll~lL~s~~~ 452 (594)
+.++. +++++|..++.+|..+.... ..+..+|+.++. .+......+++.|..++++.+
T Consensus 289 ~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d- 366 (591)
T 2vgl_B 289 VTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVD- 366 (591)
T ss_dssp HHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSC-
T ss_pred HHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCC-
Confidence 76654 67788888888887776421 111223332211 122224567888888887665
Q ss_pred hhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 453 PTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 453 ~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
++++..++++|++++..++......++.|+.+|.+....+..++..++.++.. .++ +. ...+++.|++.+.
T Consensus 367 ~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~-~~p---~~-----~~~~v~~L~~~l~ 437 (591)
T 2vgl_B 367 VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR-KYP---NK-----YESIIATLCENLD 437 (591)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH-HSC---SS-----CCTTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HCc---ch-----HHHHHHHHHHHHH
Confidence 89999999999999988876666889999999999999999999999998865 221 11 1457788888886
Q ss_pred C-Cch-HhHhHH
Q 040681 533 G-NDR-TQLHGL 542 (594)
Q Consensus 533 ~-~~~-vq~~Al 542 (594)
. .++ ++..++
T Consensus 438 ~~~~~~~~~~~~ 449 (591)
T 2vgl_B 438 SLDEPDARAAMI 449 (591)
T ss_dssp TCCSHHHHHHHH
T ss_pred hccCHHHHHHHH
Confidence 3 334 544433
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=130.51 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=157.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHH-hhccCCCHHHHHHHHHHHHHhhC--ChhHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLK-LLKETASSEAQSAAATALYNIAN--DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~-LL~~~~~~~v~e~A~~aL~~La~--~~~~~~ 234 (594)
|..++..|++.+++.|..|+.+|.+++. ++..++.+..+|+|.+++. +|.+++ .+++++|+++|+||+. ..+.+.
T Consensus 36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNN-IDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSC-HHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhhcCchHHH
Confidence 4567888999999999999999999997 5899999999999998765 787777 9999999999999996 467789
Q ss_pred HHHhcCCHHHHHHhhcCCC---------------------HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhc
Q 040681 235 VIVSELGVPTIVNVLSDSI---------------------MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~---------------------~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~ 293 (594)
.++..|++++|..+|+... .++.+++..+|++||..+.+....+...++++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999985310 2356678899999999888888888888999999998855
Q ss_pred CCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhc
Q 040681 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLA 373 (594)
Q Consensus 294 ~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~ 373 (594)
..... ..+...++.+|..++
T Consensus 194 ~~~~~------------------------------------------------------------~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 194 ADIAP------------------------------------------------------------QDIYEEAISCLTTLS 213 (684)
T ss_dssp HCCSC------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCc------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence 41100 134677899999999
Q ss_pred cCChhhHHHHHhhCcHHHHHHHh--hhCCHHHHHHHHHHHHHHH
Q 040681 374 RGSVANSRRISETKGLLCLAKLV--EKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 374 ~~~~~~~~~i~e~g~l~~L~~LL--~~~~~~v~~~A~~aL~nL~ 415 (594)
..+++..+.+.+.+....+..++ ..++...+..+++.|.|+.
T Consensus 214 ~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 214 EDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp TTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 98999888888877544333333 3444556777899999985
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=124.06 Aligned_cols=217 Identities=15% Similarity=0.139 Sum_probs=158.8
Q ss_pred cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhc-CHHh
Q 040681 197 EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIV-NVLSDSIMKVQIQVASLVARMAEH-DALA 274 (594)
Q Consensus 197 ~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv-~lL~~~~~~v~~~aa~aL~~La~~-~~~~ 274 (594)
...|.|+++.|++++ ++.|..|+++|+||+.+++.+..+...|++.+++ .+|.+++.+|++.|+++|+||+.. .++.
T Consensus 33 ~~~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKDLKSPD-AKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 356788999999998 9999999999999999999999999999998765 568888999999999999999975 4677
Q ss_pred HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCC
Q 040681 275 QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEK 354 (594)
Q Consensus 275 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~d 354 (594)
...+.+.|++++|..+|............. .....
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~---------------------------------------------~~~~~ 146 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPP---------------------------------------------FSKLL 146 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTB---------------------------------------------GGGSC
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccc---------------------------------------------ccccc
Confidence 888889999999999986541000000000 00000
Q ss_pred hH---HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCC---HHHHHHHHHHHHHHHHHhcCCHHHHHHh
Q 040681 355 PE---VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ---GELQFNCLMTIMEITAAAESNADLRRAA 428 (594)
Q Consensus 355 p~---~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~r~~~ 428 (594)
.. ....+..+++.+||+||.++.+....+...++++.|+.+|.+.+ .+++..|+.+|.+++ +.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls---~dn~~~~~~- 222 (684)
T 4gmo_A 147 KAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLS---EDNLKVGQA- 222 (684)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH---TTCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh---ccCHHHHHH-
Confidence 00 00123456788999999888888889999999999999985433 578999999999887 888887773
Q ss_pred hhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 429 FKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 429 ~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
+..+ +. ..+...++.+.+ ++ ...+..+++.|.|+.
T Consensus 223 i~~~-~~-~~~~~~ll~~~~-~~-~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 223 ITDD-QE-THVYDVLLKLAT-GT-DPRAVMACGVLHNVF 257 (684)
T ss_dssp HHTC-CS-SCHHHHHHHHHH-SS-CTTHHHHHHHHHHHH
T ss_pred HHhc-ch-HHHHHHHHHHhc-CC-cHHHHHHHHHHHhHh
Confidence 4433 21 123445554443 33 455677889999875
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-09 Score=123.86 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=201.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHH-H--
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRV-I-- 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~-i-- 236 (594)
++..|...++.+|..++.++..+++.+... .-.+.++.|++++.+++ +.+++.++.+|+.++.+.. .... .
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~ 169 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLD 169 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence 445567788899999999999998753211 01356889999999888 9999999999999986322 1110 0
Q ss_pred -HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 237 -VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA-QDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 237 -v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.-...+|.|++.+++++.++|..|+++|.++....+.. ...+ ...++.|+.++.++
T Consensus 170 ~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~--~~~l~~l~~~~~d~-------------------- 227 (852)
T 4fdd_A 170 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI--DSFIENLFALAGDE-------------------- 227 (852)
T ss_dssp SCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH--HHHHHHHHHHHTCC--------------------
T ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH--HHHHHHHHHHcCCC--------------------
Confidence 01235788888899889999999999999887643211 0111 12345555544332
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+ ..++..++++|..++...++.-.... .+.++.+..
T Consensus 228 ---------------------------------------~----~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~ 263 (852)
T 4fdd_A 228 ---------------------------------------E----PEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQ 263 (852)
T ss_dssp ---------------------------------------C----HHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHH
T ss_pred ---------------------------------------C----HHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHH
Confidence 1 13467788999988765544222111 247888888
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHh----------cC-----------CCh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIN----------DL-----------DSP 453 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~----------s~-----------~~~ 453 (594)
++.+.+++++..|+.++..++ +. ...++ .+ .|....+++.++..+. .. +.+
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~---~~-~~~~~-~~---~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLA---EQ-PICKD-VL---VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHT---TS-TTHHH-HH---TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HccCCcHHHHHHHHHHHHHHh---cc-hhHHH-HH---HHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 888888999999999998776 32 22333 12 2345667888887772 22 225
Q ss_pred hhHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 454 TLQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
.++..|+.+|+.|+...+.. -..+++.+...+.+.++.++..|+++|++++. +. .+..... -.+.++.|+.++.
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~-~~---~~~~~~~-l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE-GC---MQGMIPY-LPELIPHLIQCLS 410 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT-TT---HHHHGGG-HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cc---hHHHHHH-HHHHHHHHHHHcC
Confidence 67999999999999654321 12567788888889999999999999999976 22 2222222 2357899999998
Q ss_pred CCch-HhHhHH
Q 040681 533 GNDR-TQLHGL 542 (594)
Q Consensus 533 ~~~~-vq~~Al 542 (594)
..++ |+..|+
T Consensus 411 d~~~~Vr~~a~ 421 (852)
T 4fdd_A 411 DKKALVRSITC 421 (852)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 8777 887665
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=9e-09 Score=115.31 Aligned_cols=287 Identities=17% Similarity=0.139 Sum_probs=199.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
.+-.+..-|++.++..|..|+++|.++.. ++. . ...++.+.++|++.+ +.++..|+.+++++.. +++...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEM----C-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHH----H-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHH----H-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH-
Confidence 34456667889999999999999999973 322 1 356788999999988 9999999999999987 555332
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcC----CcCCCccCccchhhHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFE----TFVDDPRANSGKQSIHT 311 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~~~~v~~~~si~~ 311 (594)
+.++.+..+|.+.++.|+..|+++|..++.++++....+. ..++.|+.+|..- ...++.
T Consensus 179 ----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~----------- 241 (618)
T 1w63_A 179 ----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHD----------- 241 (618)
T ss_dssp ----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTC-----------
T ss_pred ----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCcccc-----------
Confidence 5678888899999999999999999999987665434443 4788888877542 100000
Q ss_pred HHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHH
Q 040681 312 IVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLC 391 (594)
Q Consensus 312 l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~ 391 (594)
..| ..+ ..++....++|..++..+++.. ...++.
T Consensus 242 --------------~~~-----------------------~~~----~~~q~~il~~L~~l~~~~~~~~-----~~~~~~ 275 (618)
T 1w63_A 242 --------------VSG-----------------------ISD----PFLQVRILRLLRILGRNDDDSS-----EAMNDI 275 (618)
T ss_dssp --------------SSS-----------------------SSC----HHHHHHHHHHHHHHTTTCHHHH-----HTTHHH
T ss_pred --------------ccC-----------------------CCC----ChHHHHHHHHHHHhCCCCHHHH-----HHHHHH
Confidence 000 112 2346667888999977665533 234566
Q ss_pred HHHHhhh------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 392 LAKLVEK------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 392 L~~LL~~------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
|..++.. .+..+...|+.++.++. .++.++. .+++.|.+++.+.+ +.++..|+.+|+.
T Consensus 276 L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~----~~~~l~~-----------~a~~~L~~~L~~~d-~~vr~~aL~~L~~ 339 (618)
T 1w63_A 276 LAQVATNTETSKNVGNAILYETVLTIMDIK----SESGLRV-----------LAINILGRFLLNND-KNIRYVALTSLLK 339 (618)
T ss_dssp HHHHHHTSCCSSTHHHHHHHHHHHHHHHSC----CCHHHHH-----------HHHHHHHHHHTCSS-TTTHHHHHHHHHH
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhcC----CCHHHHH-----------HHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 6666642 23467888888887653 3443333 26678888887665 8999999999999
Q ss_pred hhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 466 LARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 466 La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++...+..-......++.+|.+.+..+++.|...|.+++...| ...+ ++.|...+...+. ++..++
T Consensus 340 i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n------v~~i-----v~eL~~~l~~~d~e~r~~~v 406 (618)
T 1w63_A 340 TVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN------IRGM-----MKELLYFLDSCEPEFKADCA 406 (618)
T ss_dssp HHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS------THHH-----HHHHHHHHHHCCHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc------HHHH-----HHHHHHHHHhCCHHHHHHHH
Confidence 9965443333566788889999999999999999999987433 2222 3556666654444 554443
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=119.95 Aligned_cols=285 Identities=14% Similarity=0.141 Sum_probs=180.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhc
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSE 239 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~ 239 (594)
+...|++.++..|..|+.+|.++. +++.... .++.+.++|.+++ +.++..|+.+|.++.. +++.. .+.
T Consensus 91 l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~---~~~ 159 (591)
T 2vgl_B 91 FVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMV---EDQ 159 (591)
T ss_dssp HGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCH---HHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhc---ccc
Confidence 444567889999999999999886 3444333 3678999999888 9999999999999986 44422 234
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
+.++.|..+|.+.++.|+..|+++|.+++.+++.....-...+.++.|+..+...+
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~------------------------ 215 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT------------------------ 215 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC------------------------
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC------------------------
Confidence 67899999999999999999999999999876422100000122444555543321
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~ 399 (594)
...+....++|..++..++... ...++.+..++++.
T Consensus 216 ---------------------------------------~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~ 251 (591)
T 2vgl_B 216 ---------------------------------------EWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHA 251 (591)
T ss_dssp ---------------------------------------HHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSS
T ss_pred ---------------------------------------chHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCC
Confidence 1234455677777764333211 23577888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-------
Q 040681 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA------- 472 (594)
Q Consensus 400 ~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~------- 472 (594)
++.++..|++++.++......+++..+. + ...+.+.|+.++. +++.++..|+.+|+.++...+.
T Consensus 252 ~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~------~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~p~~~~~~~~ 322 (591)
T 2vgl_B 252 NSAVVLSAVKVLMKFLELLPKDSDYYNM-L------LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKRPEILKQEIK 322 (591)
T ss_dssp TTHHHHHHHHHHHHSCCSCCBTTBSHHH-H------HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHCCSTTTTCTT
T ss_pred ChHHHHHHHHHHHHHhhccCCCHHHHHH-H------HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 8899999999998764110012211110 0 1223444554442 2366666666666666532110
Q ss_pred ---------------------------hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChH
Q 040681 473 ---------------------------RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVP 525 (594)
Q Consensus 473 ---------------------------~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~ 525 (594)
.-..+++.|...+.+.+.+++++++++|++++. .. +... ...++
T Consensus 323 ~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~-~~---~~~~-----~~~v~ 393 (591)
T 2vgl_B 323 VFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAI-KV---EQSA-----ERCVS 393 (591)
T ss_dssp TTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHT-TC---HHHH-----HHHHH
T ss_pred hheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hC---hhHH-----HHHHH
Confidence 001345666677778888899999999998876 21 1111 23568
Q ss_pred HHHHhccCCch-HhHhHH
Q 040681 526 PLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 526 ~Lv~lL~~~~~-vq~~Al 542 (594)
.|++++..... +..+++
T Consensus 394 ~Ll~ll~~~~~~v~~e~i 411 (591)
T 2vgl_B 394 TLLDLIQTKVNYVVQEAI 411 (591)
T ss_dssp HHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcccchHHHHHHH
Confidence 88888886655 555544
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-08 Score=109.51 Aligned_cols=314 Identities=13% Similarity=0.077 Sum_probs=213.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
..+.+..+++.+.+.|+-+--++..++..+++.... .+..|.+-|++++ +.++..|+++|+++.. ++. +
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n-~~vr~lAL~~L~~i~~-~~~----~ 140 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHST-QFVQGLALCTLGCMGS-SEM----C 140 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSS-SHHHHHHHHHHHHHCC-HHH----H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCC-HhHHHHHHHHHHhcCC-HHH----H
Confidence 345566778899999999888999998776553222 4677888899888 9999999999999985 322 2
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
...++.+.++|++.++.||..|+.++.++...+|+.. .+.++.+..+|.+.
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~----------------------- 191 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK----------------------- 191 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC-----------------------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC-----------------------
Confidence 2457889999999999999999999999998766321 13455555555432
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
|| .++..|+.+|..++..+++....+ ...++.|+.+|.
T Consensus 192 ------------------------------------d~----~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~ 229 (618)
T 1w63_A 192 ------------------------------------NH----GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILK 229 (618)
T ss_dssp ------------------------------------CH----HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHH
T ss_pred ------------------------------------CH----hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHH
Confidence 11 246678899999976545432233 257888888876
Q ss_pred h---------------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcC-----CChhhHH
Q 040681 398 K---------------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDL-----DSPTLQI 457 (594)
Q Consensus 398 ~---------------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~-----~~~~v~~ 457 (594)
. .++..|...+.+|..++ ..+++..+. +.+.|..++... .+..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~---~~~~~~~~~-----------~~~~L~~l~~~~~~~~~~~~aV~~ 295 (618)
T 1w63_A 230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILG---RNDDDSSEA-----------MNDILAQVATNTETSKNVGNAILY 295 (618)
T ss_dssp HHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT---TTCHHHHHT-----------THHHHHHHHHTSCCSSTHHHHHHH
T ss_pred HHHcCCCCccccccCCCCChHHHHHHHHHHHhC---CCCHHHHHH-----------HHHHHHHHHhccccccchHHHHHH
Confidence 4 36778888888887665 556644431 344555554321 1257888
Q ss_pred HHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-
Q 040681 458 PAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR- 536 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~- 536 (594)
.|++++..+... +.....+++.|..+|.+.++.++.-|..+|..++. .+-. +++ .....++.+|+..+.
T Consensus 296 ea~~~i~~l~~~-~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~-------~~p~-~~~-~~~~~i~~~l~d~d~~ 365 (618)
T 1w63_A 296 ETVLTIMDIKSE-SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQ-------TDHN-AVQ-RHRSTIVDCLKDLDVS 365 (618)
T ss_dssp HHHHHHHHSCCC-HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHH-------HHHH-HHG-GGHHHHHHGGGSSCHH
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh-------hCHH-HHH-HHHHHHHHHccCCChh
Confidence 999999998642 22223578899999999999999999999999975 2222 222 245678888998777
Q ss_pred HhHhHHHHHH--------HHHHHHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 537 TQLHGLALEQ--------ARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 537 vq~~Al~l~~--------~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
++..|+++-. ..++..|..... -.|++++..+..++.++-.
T Consensus 366 Ir~~alelL~~l~~~~nv~~iv~eL~~~l~---~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 366 IKRRAMELSFALVNGNNIRGMMKELLYFLD---SCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHHHHHHCCSSSTHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHH
Confidence 8888883211 112222221111 1367787777777777733
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6.9e-09 Score=110.83 Aligned_cols=271 Identities=9% Similarity=0.058 Sum_probs=171.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHhhccC-chhHHHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCC-h
Q 040681 156 SWVWSYIAAIQMG--QLSDRIEAAIELASLAKDN-DRNKKIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIAND-Q 230 (594)
Q Consensus 156 ~~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~-~~~~~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~-~ 230 (594)
..+..++..+.++ ++..+..|+.+|..++.+. +..-.... ...++.++++|++.+ ++.++..|+++++++... .
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888 8999999999999998643 11111111 235778888998872 399999999999997642 2
Q ss_pred hHH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 231 ERV-RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA-QDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 231 ~~~-~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
+.- ......-.++.+...+.+++.+++..++++|..++...+.. ...+. .+.++.++..+....
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~------------- 272 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDI------------- 272 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSS-------------
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc-------------
Confidence 111 01111113666777778889999999999999998765321 11110 023343443332220
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh----------
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA---------- 378 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~---------- 378 (594)
..++..+...+..++.....
T Consensus 273 --------------------------------------------------~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 273 --------------------------------------------------DEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 01233344444444321000
Q ss_pred -------hHHHHHh---hCcHHHHHHHhhhC-------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHH
Q 040681 379 -------NSRRISE---TKGLLCLAKLVEKE-------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVD 441 (594)
Q Consensus 379 -------~~~~i~e---~g~l~~L~~LL~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~ 441 (594)
....+.+ ...+|.++..|... +..++..|+.+|..++.... .. ....+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~------------~~~~~~~ 369 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD------------IVPHVLP 369 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT------------HHHHHHH
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH------------HHHHHHH
Confidence 0000111 23567777777532 23688899999998874432 11 1233677
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 442 QLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 442 ~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+...+.+.+ +.++..|+.+|++++...... -..++|.|+.+|.+.++.|+..|+++|++++.
T Consensus 370 ~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 370 FIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777887654 999999999999999643311 13689999999999999999999999999975
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-08 Score=105.15 Aligned_cols=330 Identities=11% Similarity=0.094 Sum_probs=202.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccC-ch-hHHHHHhcCChHHHHHhhccC--CCHHHHHHHHHHHHHhhCC--hhHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDN-DR-NKKIIVEEGGVPPLLKLLKET--ASSEAQSAAATALYNIAND--QERVR 234 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~-~~~~i~~~g~I~~Lv~LL~~~--~~~~v~e~A~~aL~~La~~--~~~~~ 234 (594)
++..|.+.+... ..++.+|..++... +. .+ .+.+|.|+..+.++ + +.+++.++.+|+.++.+ ++.-.
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~~~~~~-~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVTNPNST-EHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHHhCCchhhH
Confidence 556666666666 77888888887642 11 11 35788999999888 6 99999999999999862 22111
Q ss_pred HHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhH--HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 235 VIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQ--DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
... ...++.++..|++. +.++|..|++++.++...-...- +.+.. -.++.|...+.+
T Consensus 168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~----------------- 228 (462)
T 1ibr_B 168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-FIMQVVCEATQC----------------- 228 (462)
T ss_dssp GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH-HHHHHHHHHTTC-----------------
T ss_pred hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhcCC-----------------
Confidence 111 23578889999888 79999999999999764321110 00100 012222222211
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.++ .++..++.+|..++...++.-......+.++
T Consensus 229 ------------------------------------------~~~----~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (462)
T 1ibr_B 229 ------------------------------------------PDT----RVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (462)
T ss_dssp ------------------------------------------SSH----HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHH
T ss_pred ------------------------------------------CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 3466678888887643332111111115678
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhc------------C----ChhhHHHHHHHHHHHhcC----
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKT------------N----SPAAKAVVDQLLRVINDL---- 450 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~------------~----~~~~~~~v~~Ll~lL~s~---- 450 (594)
.++..+.+.+++++..|+..+..++.... +... +.. . .+..+.+++.+++.+...
T Consensus 263 ~~~~~~~~~~~~v~~~a~~~l~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~ 337 (462)
T 1ibr_B 263 ITIEAMKSDIDEVALQGIEFWSNVCDEEM---DLAI--EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND 337 (462)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHH---HHHH--HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHH---HHHH--hcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc
Confidence 88888888889999999999988874320 0000 000 0 011245777888887643
Q ss_pred --CChhhHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHH
Q 040681 451 --DSPTLQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPL 527 (594)
Q Consensus 451 --~~~~v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~L 527 (594)
+++.++..|+.+|+.|+...+.. -..+++.+...|.+.++.++..|+.+|+.++.+.. .+..+..+ ...++.|
T Consensus 338 ~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~l-~~~~~~l 413 (462)
T 1ibr_B 338 DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPLV-IQAMPTL 413 (462)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTTT-TTHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHHH-HHHHHHH
Confidence 23578999999999999765421 12567777888899999999999999999986321 11111111 4578899
Q ss_pred HHhccCCch-HhHhHH-HHHHHHHHHHHhhhccccccccchHHHHHHHHHHh
Q 040681 528 MRLLRGNDR-TQLHGL-ALEQARVLTALEGADRTVVAQHPELKELVSEALYH 577 (594)
Q Consensus 528 v~lL~~~~~-vq~~Al-~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~ 577 (594)
+++|...++ +|..|+ .+. .+...+. ..+.+.+.+..+++..+..
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~--~~~~~~~----~~~~~~~~l~~ll~~Ll~~ 459 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVG--RICELLP----EAAINDVYLAPLLQCLIEG 459 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHH--HHHHHGG----GGCCSTTTHHHHHHHHHCC
T ss_pred HHHhcCCCHHHHHHHHHHHH--HHHHhcc----cccccHHHHHHHHHHHHHH
Confidence 999998877 887775 222 1111111 1122345667777655443
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-06 Score=101.80 Aligned_cols=297 Identities=15% Similarity=0.146 Sum_probs=186.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH----HHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDND-RNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER----VRV 235 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~-~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~----~~~ 235 (594)
+...+++.+...|..|+.+|+.++.... ..-...+ ...++.|++.+++++ +.++..++++|+.++..-.. ...
T Consensus 374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 3445677888899999999999997642 2112222 246888999998887 99999999999999863110 111
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCH-----HhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDA-----LAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
-...+|.++..|++. +.++..++++|.+++..-. .....+ ...++.|+.++.+...
T Consensus 452 --~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~-------------- 512 (861)
T 2bpt_A 452 --LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDN-------------- 512 (861)
T ss_dssp --HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCC--------------
T ss_pred --HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCc--------------
Confidence 123478888888776 8999999999999986310 011111 1124444454433210
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
++ .++..++.+|..+............ ...++
T Consensus 513 -------------------------------------------~~----~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~ 544 (861)
T 2bpt_A 513 -------------------------------------------EF----NARASAFSALTTMVEYATDTVAETS-ASIST 544 (861)
T ss_dssp -------------------------------------------GG----GHHHHHHHHHHHHHHHCCGGGHHHH-HHHHH
T ss_pred -------------------------------------------ch----HHHHHHHHHHHHHHHHcchhhHHHH-HHHHH
Confidence 00 2355667777776543222121111 13567
Q ss_pred HHHHHhhhC---------------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCCh-h
Q 040681 391 CLAKLVEKE---------------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSP-T 454 (594)
Q Consensus 391 ~L~~LL~~~---------------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~-~ 454 (594)
.++..+... ...++..++.+|.+++..... + +. |....+++.++.++.+.+ . .
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~-----~~---~~~~~l~~~l~~~l~~~~-~~~ 613 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--S-----VE---PVADMLMGLFFRLLEKKD-SAF 613 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--G-----TG---GGHHHHHHHHHHHHHSTT-GGG
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--h-----hH---HHHHHHHHHHHHHHccCC-CCc
Confidence 777776532 245777889999888744321 1 11 234568888888888765 5 8
Q ss_pred hHHHHHHHHHHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHh
Q 040681 455 LQIPAIKSIGSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRL 530 (594)
Q Consensus 455 v~~~a~~aL~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~l 530 (594)
+++.++.+++.++...... -..++|.|...|.+.++.++..|+.++..++..-. +...... ...++.+++.
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~-~~l~~~l~~~ 688 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE----EDFRRYS-DAMMNVLAQM 688 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGGHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhccchH-HHHHHHHHHH
Confidence 9999999999998543221 12567888888888888999999999998864111 1111111 2356677777
Q ss_pred ccCCc--h-HhHhHH
Q 040681 531 LRGND--R-TQLHGL 542 (594)
Q Consensus 531 L~~~~--~-vq~~Al 542 (594)
+...+ . ++..++
T Consensus 689 l~~~~~~~~vr~~~~ 703 (861)
T 2bpt_A 689 ISNPNARRELKPAVL 703 (861)
T ss_dssp HHCTTCCTTHHHHHH
T ss_pred hCCccccHhhhHHHH
Confidence 77543 4 665554
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-06 Score=97.64 Aligned_cols=268 Identities=9% Similarity=0.073 Sum_probs=169.2
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCchhHHHHHh--cCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCC-h
Q 040681 157 WVWSYIAAIQMG--QLSDRIEAAIELASLAKDNDRNKKIIVE--EGGVPPLLKLLKETA-SSEAQSAAATALYNIAND-Q 230 (594)
Q Consensus 157 ~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~~~~i~~--~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~-~ 230 (594)
.+..++..+.++ ++..|..|+.+|..++..-.. ..+.. ...++.|++.+++++ +..++..|+.+|+++... +
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466677788888 899999999999998864211 11111 234677788887762 389999999999998752 2
Q ss_pred hHH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh-HHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 231 ERV-RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA-QDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 231 ~~~-~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
.+- ........++.+...+.+.+.+++..++.+|..++...+.. ...+ ....++.++..+.+.. +
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~---~--------- 273 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDI---D--------- 273 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSS---H---------
T ss_pred HHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCCc---h---------
Confidence 211 11111124677777888889999999999999998765432 1221 1134444444432220 0
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC------------
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS------------ 376 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~------------ 376 (594)
.++..++..+..++...
T Consensus 274 ---------------------------------------------------~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 274 ---------------------------------------------------EVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 11222333333332100
Q ss_pred ---------hhhHHHHHhhCcHHHHHHHhhh-------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHH
Q 040681 377 ---------VANSRRISETKGLLCLAKLVEK-------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVV 440 (594)
Q Consensus 377 ---------~~~~~~i~e~g~l~~L~~LL~~-------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v 440 (594)
....+.. -...++.++..|.. ++..++..|+.+|..++.... . . + ...++
T Consensus 303 ~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~----~--~------~~~~l 368 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D----D--I------VPHVL 368 (876)
T ss_dssp HSSCCSSCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-G----G--G------HHHHH
T ss_pred cCCCccchhHHHHHHH-HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-H----h--h------HHHHH
Confidence 0000000 12356777777753 234688889999988874332 1 1 1 23467
Q ss_pred HHHHHHHhcCCChhhHHHHHHHHHHhhcCCh-h-h---hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 441 DQLLRVINDLDSPTLQIPAIKSIGSLARTFP-A-R---ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 441 ~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~-~-~---~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+.+...+.+.+ +.++..|+.+|++++.... . . -..+++.|+..|.+.++.|+..|+++|.+++.
T Consensus 369 ~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 369 PFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCC-hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77777777654 9999999999999996543 1 1 12578899999999999999999999999975
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=9e-05 Score=85.38 Aligned_cols=305 Identities=12% Similarity=0.041 Sum_probs=188.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccC-ch-hHHHHHhcCChHHHHHhhccC-CCHHHHHHHHHHHHHhhCC--hhHH--
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDN-DR-NKKIIVEEGGVPPLLKLLKET-ASSEAQSAAATALYNIAND--QERV-- 233 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~-~~~~i~~~g~I~~Lv~LL~~~-~~~~v~e~A~~aL~~La~~--~~~~-- 233 (594)
++..|..++...|..++.+|..++... +. .+. ..+|.|++.++++ + +.+++.++.+|+.++.. ++.+
T Consensus 100 ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~-----~ll~~L~~~l~~~~~-~~~r~~al~~l~~l~~~~~~~~~~~ 173 (861)
T 2bpt_A 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQP-ENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSC-HHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH-----HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHcCChhhhHH
Confidence 566778888899999999999887652 21 221 3468888888887 6 99999999999999862 2210
Q ss_pred HHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhH--HHHHHcCChhhHHHhhhcCCcCCCccCccchhhH
Q 040681 234 RVIVSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQ--DDFARENVIRPLVTLLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si 309 (594)
... ....++.+...+.++ +.++|..++.+|.++...-...- +.. ....++.|...+.++
T Consensus 174 ~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~~ll~~l~~~~~~~--------------- 236 (861)
T 2bpt_A 174 VSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE-RNYLMQVVCEATQAE--------------- 236 (861)
T ss_dssp GGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH-HHHHHHHHHHHHTCS---------------
T ss_pred HHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhH-HHHHHHHHHHHhcCC---------------
Confidence 000 112467777888877 89999999999998754221110 000 011233333333221
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcH
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGL 389 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l 389 (594)
+ ..++..++.+|..++...++.-........+
T Consensus 237 --------------------------------------------~----~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 268 (861)
T 2bpt_A 237 --------------------------------------------D----IEVQAAAFGCLCKIMSKYYTFMKPYMEQALY 268 (861)
T ss_dssp --------------------------------------------C----HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHH
T ss_pred --------------------------------------------C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1345667777777754322211111112566
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHH---------hhhcCChhhHHHHHHHHHHHhcC------CChh
Q 040681 390 LCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRA---------AFKTNSPAAKAVVDQLLRVINDL------DSPT 454 (594)
Q Consensus 390 ~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~---------~~~~~~~~~~~~v~~Ll~lL~s~------~~~~ 454 (594)
+.+...+.+.++.++..|+.++..++............ .+. .+....+++.++..+... +++.
T Consensus 269 ~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~ll~~l~~~~~d~~d~~~~ 346 (861)
T 2bpt_A 269 ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA--LSSIKDVVPNLLNLLTRQNEDPEDDDWN 346 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH--HHHHHHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH--HHHHHHHHHHHHHHHHhcccccccccCc
Confidence 77777788888999999999998876332100000000 000 011245788888888753 2257
Q ss_pred hHHHHHHHHHHhhcCChhh-hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC
Q 040681 455 LQIPAIKSIGSLARTFPAR-ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533 (594)
Q Consensus 455 v~~~a~~aL~~La~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~ 533 (594)
++..+..+|+.++...+.. -..+++.+.+.+.+.++.++..|+++|+.++.+ . .++.....++ ..++.|++.+..
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~-~--~~~~~~~~l~-~il~~l~~~l~d 422 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-P--DKVQRTYYVH-QALPSILNLMND 422 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-S--CHHHHHHHHH-HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC-C--CHHHHHHHHH-HHHHHHHHHcCC
Confidence 8899999999999644311 124567777778889999999999999999752 1 1132223333 367888888887
Q ss_pred Cch-HhHhHH
Q 040681 534 NDR-TQLHGL 542 (594)
Q Consensus 534 ~~~-vq~~Al 542 (594)
.++ ++..++
T Consensus 423 ~~~~vr~~a~ 432 (861)
T 2bpt_A 423 QSLQVKETTA 432 (861)
T ss_dssp SCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 777 777665
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-06 Score=95.80 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=171.6
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhhccCchh-HHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 160 SYIAAIQMG--QLSDRIEAAIELASLAKDNDRN-KKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 160 ~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~-~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
.++..+..+ +..+|..|+.+|.+++..-+.+ .........++.+..++.+.+ .+++..++.+|..++. .++.-..
T Consensus 176 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~ 254 (876)
T 1qgr_A 176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMET 254 (876)
T ss_dssp HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345566665 6889999999999877531111 000111124666777777777 9999999999999986 3333222
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH----HHHHH----------------cCChhhHHHhhhcCC
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ----DDFAR----------------ENVIRPLVTLLSFET 295 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~----~~i~~----------------~g~i~~Lv~lL~~~~ 295 (594)
.+....++.++..+.+.+.+++..+.+.+..++....... ....+ ...++.++..+....
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 2333678888888888899999999999999986421100 00000 011222222222110
Q ss_pred cCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC
Q 040681 296 FVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG 375 (594)
Q Consensus 296 ~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~ 375 (594)
. + -+.++. .++..+..+|..++..
T Consensus 335 ~--d--------------------------------------------------~~~~~~----~~r~~a~~~l~~l~~~ 358 (876)
T 1qgr_A 335 E--N--------------------------------------------------DDDDDW----NPCKAAGVCLMLLATC 358 (876)
T ss_dssp S--S--------------------------------------------------CCTTCC----CHHHHHHHHHHHHHHH
T ss_pred c--c--------------------------------------------------cccccc----HHHHHHHHHHHHHHHH
Confidence 0 0 000111 2355667777777532
Q ss_pred ChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCC-HH-HHHHhhhcCChhhHHHHHHHHHHHhcCCCh
Q 040681 376 SVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESN-AD-LRRAAFKTNSPAAKAVVDQLLRVINDLDSP 453 (594)
Q Consensus 376 ~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~-~~-~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~ 453 (594)
..+ .+ -...++.+...+.+.+..++..|++++.+++ ++. ++ +.. + ...+++.++..+.+.. +
T Consensus 359 ~~~---~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~---~~~~~~~~~~--~------~~~~l~~l~~~l~d~~-~ 422 (876)
T 1qgr_A 359 CED---DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL---EGPEPSQLKP--L------VIQAMPTLIELMKDPS-V 422 (876)
T ss_dssp HGG---GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS---SSSCHHHHHH--H------HHHHHHHHHHHHTCSS-H
T ss_pred CcH---hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHH---cCCCHHHHHH--H------HHHHHHHHHHHhCCCC-H
Confidence 211 11 1235667777777888999999999998776 332 12 221 1 2457888888887654 8
Q ss_pred hhHHHHHHHHHHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 454 TLQIPAIKSIGSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 454 ~v~~~a~~aL~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++..|+.+|++++...+.. -..+++.|+..|.+. +.|+..|+++|.+++.
T Consensus 423 ~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999754421 126788888888775 8899999999999875
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-05 Score=85.32 Aligned_cols=281 Identities=13% Similarity=0.132 Sum_probs=187.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 160 SYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 160 ~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
+.+..+++.+.+.|+-+--++..++..+++.... .+..+.+=|++++ +.++-.|+++|+++.. ++..+
T Consensus 78 ~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n-~~ir~lALr~L~~i~~-~e~~~----- 145 (621)
T 2vgl_A 78 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRN-PTFMGLALHCIANVGS-REMAE----- 145 (621)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC-HHHHH-----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCC-HHHHHHHHHHhhccCC-HHHHH-----
Confidence 4566778999999999999999999876654322 2567777788888 9999999999999954 33322
Q ss_pred CCHHHHHHhh--cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 240 LGVPTIVNVL--SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 240 g~i~~Lv~lL--~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
..++.+.++| .+.++.||..|+-++.++...+|+. +...+.++.|.++|.+. +.
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~----d~----------------- 201 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQ----HL----------------- 201 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCS----CH-----------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCC----Cc-----------------
Confidence 3478889999 7889999999999999999876632 22236788888888543 11
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH---
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK--- 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~--- 394 (594)
.++..|..+|..++..+++.. ...++.++.
T Consensus 202 ------------------------------------------~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~ 234 (621)
T 2vgl_A 202 ------------------------------------------GVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLS 234 (621)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHH
T ss_pred ------------------------------------------cHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHH
Confidence 235667778888875454321 123444444
Q ss_pred -HhhhC-------------CHHHHHHHHHHHHHHHHHhc-CCHHHHHHhhhcCChhhHHHHHHHHHHHhcC---------
Q 040681 395 -LVEKE-------------QGELQFNCLMTIMEITAAAE-SNADLRRAAFKTNSPAAKAVVDQLLRVINDL--------- 450 (594)
Q Consensus 395 -LL~~~-------------~~~v~~~A~~aL~nL~~~~~-~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~--------- 450 (594)
++..+ ++-.|......|..++ . .+++.+.. +. .+++.++..+...
T Consensus 235 ~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~---~~~d~~~~~~-l~-------~~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 235 RIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP---PPEDPAVRGR-LT-------ECLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp HHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS---SCSSHHHHHH-HH-------HHHHHHHHHHHSCCSCSSHHHH
T ss_pred HHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC---CCCCHHHHHH-HH-------HHHHHHHHhhccCccccccccc
Confidence 43322 4567776666665443 3 24544442 11 1344444322111
Q ss_pred C-ChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHH
Q 040681 451 D-SPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMR 529 (594)
Q Consensus 451 ~-~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~ 529 (594)
+ ...|.-.|++++..+. ..+.....++..|..+|.+.+++++.-|..+|..++. .+ +. .. +++ .-...++.
T Consensus 304 n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~-~~---~~-~~-~~~-~~~~~i~~ 375 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLAS-SE---FS-HE-AVK-THIETVIN 375 (621)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTT-CT---TT-HH-HHH-TTHHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHh-cc---Cc-HH-HHH-HHHHHHHH
Confidence 1 2378888999999986 3333334678899999999999999999999999986 22 11 12 222 34667778
Q ss_pred hcc-CCch-HhHhHH
Q 040681 530 LLR-GNDR-TQLHGL 542 (594)
Q Consensus 530 lL~-~~~~-vq~~Al 542 (594)
+|. ..|. ++..|+
T Consensus 376 ~L~~d~d~~Ir~~aL 390 (621)
T 2vgl_A 376 ALKTERDVSVRQRAV 390 (621)
T ss_dssp HHTTCCCHHHHHHHH
T ss_pred HhccCCCHhHHHHHH
Confidence 888 7777 888888
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-05 Score=86.26 Aligned_cols=262 Identities=18% Similarity=0.135 Sum_probs=171.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh--ccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL--KETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL--~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
+-.+..-|++.++-.+.-|+.+|.++.. ++.. ...++++.++| .+.+ +-++..|+-++.++.. +++...
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~-----~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~~~ 184 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMA-----EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDLVP 184 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH-----HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH-----HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhhcC
Confidence 3345557788999999999999999853 3332 24578899999 7777 9999999999999987 544321
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh----cC-Cc-CCCccCccchhh
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS----FE-TF-VDDPRANSGKQS 308 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~----~~-~~-~~~~~~v~~~~s 308 (594)
..+.++.+.++|.+.++.|+..|..+|..++..++. .+ ...++.++..|. .+ .+ .++.
T Consensus 185 ---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~-------- 248 (621)
T 2vgl_A 185 ---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE---EF--KTSVSLAVSRLSRIVTSASTDLQDYT-------- 248 (621)
T ss_dssp ---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH---HH--TTHHHHHHHHHHHHHHCCSSSCSTTE--------
T ss_pred ---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHHHHHhCCCCCccchh--------
Confidence 247899999999988999999999999999987753 12 124555555443 11 10 0100
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhC
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETK 387 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g 387 (594)
..|.. + .+++....+.|..++.. +++....+.+
T Consensus 249 -----------------~~~~~-----------------------~----~w~qi~il~ll~~~~~~~d~~~~~~l~~-- 282 (621)
T 2vgl_A 249 -----------------YYFVP-----------------------A----PWLSVKLLRLLQCYPPPEDPAVRGRLTE-- 282 (621)
T ss_dssp -----------------ETTEE-----------------------S----HHHHHHHHHHGGGSSSCSSHHHHHHHHH--
T ss_pred -----------------hcCCC-----------------------C----chHHHHHHHHHHHhCCCCCHHHHHHHHH--
Confidence 00101 1 13455556666666542 3444443332
Q ss_pred cHHHHHHHhh---------hCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhH
Q 040681 388 GLLCLAKLVE---------KEQG--ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQ 456 (594)
Q Consensus 388 ~l~~L~~LL~---------~~~~--~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~ 456 (594)
.+..++..+. +.+. .+...|+.++..+. .++++++ .+++.|.++|.+.+ +.++
T Consensus 283 ~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~~~~~~~-----------~~~~~L~~~L~~~~-~nir 346 (621)
T 2vgl_A 283 CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----SEPNLLV-----------RACNQLGQFLQHRE-TNLR 346 (621)
T ss_dssp HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----CCHHHHH-----------HHHHHHHHHSSCSC-HHHH
T ss_pred HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----CcHHHHH-----------HHHHHHHHHhcCCC-cchH
Confidence 2333332221 1122 56677777776653 3444433 26677888887554 8899
Q ss_pred HHHHHHHHHhhcCChh--hhhccHHHHHHhcc-CCCHHHHHHHHHHHHHhcC
Q 040681 457 IPAIKSIGSLARTFPA--RETRVIGPLVAHLS-HRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 457 ~~a~~aL~~La~~~~~--~~~~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~ 505 (594)
-.++.+|..++...+. .-......++..|. +.+..++..|...|..++.
T Consensus 347 y~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 347 YLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 9999999999876542 11245677778888 8889999999999999876
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=102.41 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hh-HHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~-~~~ 234 (594)
.+..++..+.+.|.+.|..|...|.+....+......-.....++.|++.|.+.+ +.+|..|+.+|+.++.. ++ ...
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4667888899999999999999998876542110000011235778999998777 99999999999999862 22 222
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHh------HHHHHHcCChhhHHHhhhcCCcCCCccCccchhh
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALA------QDDFARENVIRPLVTLLSFETFVDDPRANSGKQS 308 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~------~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s 308 (594)
. .++.|+..|.+++..+|..++.+|..++...... .... -...++.|+..+.+. .+
T Consensus 86 ~-----i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~---~~--------- 147 (1230)
T 1u6g_C 86 T-----IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQ---ED--------- 147 (1230)
T ss_dssp H-----HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCC---SC---------
T ss_pred H-----HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCC---Cc---------
Confidence 2 4678888888888899999999999998653211 0111 123566666666421 00
Q ss_pred HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhC
Q 040681 309 IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETK 387 (594)
Q Consensus 309 i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g 387 (594)
...+..|..+|..++... ...... -..
T Consensus 148 --------------------------------------------------~~~~~~al~~l~~~~~~~~~~l~~~--~~~ 175 (1230)
T 1u6g_C 148 --------------------------------------------------VSVQLEALDIMADMLSRQGGLLVNF--HPS 175 (1230)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHTCSSCTTT--HHH
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHHHHhHhHHHHH--HHH
Confidence 123566777777775311 111111 133
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.++.|...|.+++..++..|+.+|..++ .... . .+. ..+++.++..|...++..++..++.+++.++
T Consensus 176 ll~~l~~~L~~~~~~vR~~a~~al~~l~---~~~~---~-~~~------~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 176 ILTCLLPQLTSPRLAVRKRTIIALGHLV---MSCG---N-IVF------VDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HHHHHGGGGGCSSHHHHHHHHHHHHHHT---TTC--------C------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHH---HhcC---H-HHH------HHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 6788888888888899999999998776 2221 1 121 2378888888877654577888999999998
Q ss_pred cCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 468 RTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 468 ~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
...+.. -..+++.+++.+.+.+++++..|..++..++.
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 644321 13678999999988889999999999888754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-05 Score=91.33 Aligned_cols=253 Identities=14% Similarity=0.027 Sum_probs=166.8
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC-------CHHHHHHHHHHHHHhhCChhHHHHHHhc
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA-------SSEAQSAAATALYNIANDQERVRVIVSE 239 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~-------~~~v~e~A~~aL~~La~~~~~~~~iv~~ 239 (594)
++++..+.-|+..|+-+..++.. .++..|...|.+.+ .+.++..|+-.||....... + .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~-----e 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N-----I 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C-----H
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C-----H
Confidence 34556666666666666544211 13566666676543 25678888888888643111 1 1
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
.+++.|..+|.+.+..+++.|+.+|+-+...+ .+ ..++..|+..+... ++
T Consensus 472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn------~~ai~~LL~~~~e~---~~-------------------- 521 (963)
T 4ady_A 472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GK------PEAIHDMFTYSQET---QH-------------------- 521 (963)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CC------HHHHHHHHHHHHHC---SC--------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CC------HHHHHHHHHHHhcc---Cc--------------------
Confidence 23667788888777777888888888764322 11 12355566655432 11
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh-h
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE-K 398 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~-~ 398 (594)
..+++.++.+|+.+..|+++ .++.++.+|. +
T Consensus 522 ---------------------------------------e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~ 553 (963)
T 4ady_A 522 ---------------------------------------GNITRGLAVGLALINYGRQE---------LADDLITKMLAS 553 (963)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHC
T ss_pred ---------------------------------------HHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhC
Confidence 13466678888888777776 5677777776 4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccH
Q 040681 399 EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVI 478 (594)
Q Consensus 399 ~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i 478 (594)
.++.++..++.++.--.+ ..+|. ..|+.|+..+.+..++.++..|+.+|+.++...+ ..+
T Consensus 554 ~dp~vRygaa~alglAya-GTGn~---------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----e~v 613 (963)
T 4ady_A 554 DESLLRYGGAFTIALAYA-GTGNN---------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----TTV 613 (963)
T ss_dssp SCHHHHHHHHHHHHHHTT-TSCCH---------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----SSH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCCH---------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----HHH
Confidence 667888888887753222 23443 2567788887777778999999999999874332 468
Q ss_pred HHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 479 GPLVAHL-SHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 479 ~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+.++.+| ++.++.||..|++||+.+.. +|+ . ..++..|.+++...+. |+..|+
T Consensus 614 ~rlv~~L~~~~d~~VR~gAalALGli~a-Gn~-----~-----~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 614 PRIVQLLSKSHNAHVRCGTAFALGIACA-GKG-----L-----QSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp HHHTTTGGGCSCHHHHHHHHHHHHHHTS-SSC-----C-----HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcc-CCC-----c-----HHHHHHHHHHccCCCHHHHHHHH
Confidence 8888855 67899999999999999876 552 0 1256677888877777 887766
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0001 Score=67.31 Aligned_cols=193 Identities=16% Similarity=0.198 Sum_probs=142.3
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
...+...+..++.+|.++-..|+.+|...+.+++...|+..+-+ +..|+-+++.. .. +
T Consensus 27 a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ks----Ea-----------I-- 84 (253)
T 2db0_A 27 AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKS----EA-----------I-- 84 (253)
T ss_dssp HHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHC----CS-----------H--
T ss_pred HHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhc----cc-----------C--
Confidence 33345568889999999888999999999999998776443332 34455555443 11 0
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
.+-...+++++.++.-+|+..+ +.+|.+..
T Consensus 85 ---------------------------------------------pltqeIa~a~G~la~i~Pe~v~-----~vVp~lfa 114 (253)
T 2db0_A 85 ---------------------------------------------PLTQEIAKAFGQMAKEKPELVK-----SMIPVLFA 114 (253)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHH
T ss_pred ---------------------------------------------chHHHHHHHHhHHHHhCHHHHH-----hhHHHHHH
Confidence 1223457888888877787443 34677777
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
=..-+++.++.|-..+|.+|. ..||.+.. .++.-+..++.+.+ ..-+..|+..++.+..++...-
T Consensus 115 nyrigd~kikIn~~yaLeeIa---ranP~l~~-----------~v~rdi~smltskd-~~Dkl~aLnFi~alGen~~~yv 179 (253)
T 2db0_A 115 NYRIGDEKTKINVSYALEEIA---KANPMLMA-----------SIVRDFMSMLSSKN-REDKLTALNFIEAMGENSFKYV 179 (253)
T ss_dssp HSCCCSHHHHHHHHHHHHHHH---HHCHHHHH-----------HHHHHHHHHTSCSS-HHHHHHHHHHHHTCCTTTHHHH
T ss_pred HHhcCCccceecHHHHHHHHH---HhChHHHH-----------HHHHHHHHHhcCCC-hHHHHHHHHHHHHHhccCcccc
Confidence 677789999999999999887 55774443 37788888888555 6667788888888887776666
Q ss_pred hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHH
Q 040681 475 TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAI 518 (594)
Q Consensus 475 ~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i 518 (594)
.-++|.|..+|++++.-|+..|+.+|.+++. -| +..++.+
T Consensus 180 ~PfLprL~aLL~D~deiVRaSaVEtL~~lA~-~n---pklRkii 219 (253)
T 2db0_A 180 NPFLPRIINLLHDGDEIVRASAVEALVHLAT-LN---DKLRKVV 219 (253)
T ss_dssp GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHT-SC---HHHHHHH
T ss_pred CcchHHHHHHHcCcchhhhHHHHHHHHHHHH-cC---HHHHHHH
Confidence 6889999999999999999999999999988 44 3444443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00021 Score=65.23 Aligned_cols=215 Identities=15% Similarity=0.202 Sum_probs=151.2
Q ss_pred hcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCHH
Q 040681 196 EEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVL-SDSIMKVQIQVASLVARMAEHDAL 273 (594)
Q Consensus 196 ~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL-~~~~~~v~~~aa~aL~~La~~~~~ 273 (594)
+...+..++++|.+.- -.+|.+|...+.+++. -++-...+ +..|..++ ++......+..+.+++.++.-.|+
T Consensus 30 d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 3456778899998876 8899999999999997 44444333 23344454 455778878899999999987763
Q ss_pred hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccC
Q 040681 274 AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENE 353 (594)
Q Consensus 274 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~ 353 (594)
. +.++|..+.... |-+
T Consensus 104 ~---------v~~vVp~lfany------------------------------------------------------rig- 119 (253)
T 2db0_A 104 L---------VKSMIPVLFANY------------------------------------------------------RIG- 119 (253)
T ss_dssp H---------HHHHHHHHHHHS------------------------------------------------------CCC-
T ss_pred H---------HHhhHHHHHHHH------------------------------------------------------hcC-
Confidence 2 334444443221 011
Q ss_pred ChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCC
Q 040681 354 KPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNS 433 (594)
Q Consensus 354 dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~ 433 (594)
|| +.+.+...+|..++..||+.-. +++.-+..++.+.+..-+..|+..| .+++++.. +- +
T Consensus 120 d~----kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi---~alGen~~--~y---v--- 179 (253)
T 2db0_A 120 DE----KTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFI---EAMGENSF--KY---V--- 179 (253)
T ss_dssp SH----HHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHH---HTCCTTTH--HH---H---
T ss_pred Cc----cceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHH---HHHhccCc--cc---c---
Confidence 22 4466778899998888887443 3467788889888766565555555 55556554 22 1
Q ss_pred hhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 434 PAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 434 ~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
-..++.|..+|...+ .-|+..|+.+|++|+...+. -..+|..-++-+++.+..|++....+|++++.
T Consensus 180 ---~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 180 ---NPFLPRIINLLHDGD-EIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp ---GGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ---CcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 238899999998766 88999999999999976654 22566666777899999999999999999865
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-05 Score=89.95 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=185.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhH---
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QER--- 232 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~--- 232 (594)
.+..++..|.+.+..+|..|+.+|..++...+.. .+ ...++.|+..|.+++ +.++..|+.+|+.++.. ...
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCcccc
Confidence 4555777788889999999999999998653331 11 234677888888877 88999999999998852 111
Q ss_pred ---HHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHH-hHHHHHHcCChhhHHHhhhcCCcCCCccCccchh
Q 040681 233 ---VRVIVSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDAL-AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQ 307 (594)
Q Consensus 233 ---~~~iv~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~ 307 (594)
.... -...+|.|...+. +++..++..+..+|.+++...+. ....+ ...++.|+..|.+.
T Consensus 124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~------------- 187 (1230)
T 1u6g_C 124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSP------------- 187 (1230)
T ss_dssp CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCS-------------
T ss_pred cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCC-------------
Confidence 1111 2346899999998 47899999999999999853211 00000 01223333333221
Q ss_pred hHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhC
Q 040681 308 SIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETK 387 (594)
Q Consensus 308 si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g 387 (594)
+ ..++..|+.+|..++...++ .+ -..
T Consensus 188 ----------------------------------------------~----~~vR~~a~~al~~l~~~~~~---~~-~~~ 213 (1230)
T 1u6g_C 188 ----------------------------------------------R----LAVRKRTIIALGHLVMSCGN---IV-FVD 213 (1230)
T ss_dssp ----------------------------------------------S----HHHHHHHHHHHHHHTTTC--------CTT
T ss_pred ----------------------------------------------c----HHHHHHHHHHHHHHHHhcCH---HH-HHH
Confidence 1 13577788999998643322 11 234
Q ss_pred cHHHHHHHhhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHh
Q 040681 388 GLLCLAKLVEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSL 466 (594)
Q Consensus 388 ~l~~L~~LL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~L 466 (594)
.++.|+..|...+ ..++..++.++..++.... . .|.+ ....+++.++..+.+.+ +.+++.++.+++.+
T Consensus 214 ~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~------~~~~---~l~~l~~~ll~~l~d~~-~~vR~~a~~~l~~l 282 (1230)
T 1u6g_C 214 LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H------RIGE---YLEKIIPLVVKFCNVDD-DELREYCIQAFESF 282 (1230)
T ss_dssp HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G------GGTT---SCTTHHHHHHHHHSSCC-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H------HHHH---HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 5788888887654 3566678888887764321 1 1222 23458899999887554 88999999999999
Q ss_pred hcCChhh----hhccHHHHHHhccC-------------------------------------CCHHHHHHHHHHHHHhcC
Q 040681 467 ARTFPAR----ETRVIGPLVAHLSH-------------------------------------RNQEVATEAAIALQKFAS 505 (594)
Q Consensus 467 a~~~~~~----~~~~i~~Lv~lL~~-------------------------------------~~~~v~~~Aa~aL~nl~~ 505 (594)
+...+.. -..+++.+++.+.. ..+.+++.|+.+|..++.
T Consensus 283 ~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~ 362 (1230)
T 1u6g_C 283 VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVS 362 (1230)
T ss_dssp HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHT
T ss_pred HHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHH
Confidence 9754321 12455666655531 123578889999998876
Q ss_pred CCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 506 PENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 506 ~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
. . .+.-..++ ...++.|+..+...+. ++..++
T Consensus 363 ~-~---~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 363 T-R---HEMLPEFY-KTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp T-C---CTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHH
T ss_pred h-c---hhHHHHHH-HHHHHHHHHHcCCCchHHHHHHH
Confidence 2 1 12222222 3356778777765555 776665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00025 Score=81.16 Aligned_cols=278 Identities=10% Similarity=0.039 Sum_probs=161.8
Q ss_pred cchHHHHHHHHHHh--cCC---HHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 040681 153 PMLSWVWSYIAAIQ--MGQ---LSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA 227 (594)
Q Consensus 153 ~i~~~i~~lv~~L~--~~~---~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La 227 (594)
++...+.+.+..=. .|+ +..+.-|+..|+-..-++.. +.+++.|..+|.+.+ ..+.+.|+.+|+.+-
T Consensus 429 ~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~-~~~~~~AalALGli~ 500 (963)
T 4ady_A 429 DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDS-ATSGEAAALGMGLCM 500 (963)
T ss_dssp HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 56788888777554 343 55777788888887554311 134677888888776 777888999999773
Q ss_pred CChhHHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccch
Q 040681 228 NDQERVRVIVSELGVPTIVNVLS-DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGK 306 (594)
Q Consensus 228 ~~~~~~~~iv~~g~i~~Lv~lL~-~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~ 306 (594)
....+. .++..|+..+. +.+.+++..++..|+.+...++ ..++.++..|.... ++ +..-
T Consensus 501 vGTgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~---------e~~~~li~~L~~~~---dp--~vRy 560 (963)
T 4ady_A 501 LGTGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ---------ELADDLITKMLASD---ES--LLRY 560 (963)
T ss_dssp TTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG---------GGGHHHHHHHHHCS---CH--HHHH
T ss_pred cccCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh---------HHHHHHHHHHHhCC---CH--HHHH
Confidence 211111 12445555443 4478899999999998876543 35666777665431 11 0000
Q ss_pred hhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhh
Q 040681 307 QSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISET 386 (594)
Q Consensus 307 ~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~ 386 (594)
.....+.+++...++ ..++..|+... .+-.+ ..++..|+-+|+.+..++++
T Consensus 561 gaa~alglAyaGTGn-----~~aIq~LL~~~------------~~d~~----d~VRraAViaLGlI~~g~~e-------- 611 (963)
T 4ady_A 561 GGAFTIALAYAGTGN-----NSAVKRLLHVA------------VSDSN----DDVRRAAVIALGFVLLRDYT-------- 611 (963)
T ss_dssp HHHHHHHHHTTTSCC-----HHHHHHHHHHH------------HHCSC----HHHHHHHHHHHHHHTSSSCS--------
T ss_pred HHHHHHHHHhcCCCC-----HHHHHHHHHHh------------ccCCc----HHHHHHHHHHHHhhccCCHH--------
Confidence 000001111111110 00111111100 00011 23567788888887666653
Q ss_pred CcHHHHHHH-hhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 387 KGLLCLAKL-VEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 387 g~l~~L~~L-L~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
.++.++.+ ++++++.++..++++|..++ .+++ .+.+++.|..+..+.+ ..|+..|+.+||.
T Consensus 612 -~v~rlv~~L~~~~d~~VR~gAalALGli~---aGn~-------------~~~aid~L~~L~~D~d-~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 612 -TVPRIVQLLSKSHNAHVRCGTAFALGIAC---AGKG-------------LQSAIDVLDPLTKDPV-DFVRQAAMIALSM 673 (963)
T ss_dssp -SHHHHTTTGGGCSCHHHHHHHHHHHHHHT---SSSC-------------CHHHHHHHHHHHTCSS-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHhc---cCCC-------------cHHHHHHHHHHccCCC-HHHHHHHHHHHHH
Confidence 46666664 45788899999999998876 2332 0226676777765554 8899999999998
Q ss_pred hhcCChhh----hhccHHHHHHhcc--CCCHHHHHHHHHHHHHhcC
Q 040681 466 LARTFPAR----ETRVIGPLVAHLS--HRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 466 La~~~~~~----~~~~i~~Lv~lL~--~~~~~v~~~Aa~aL~nl~~ 505 (594)
+.....+. -..+...|.+... +.++..+.-|..|.+-+-.
T Consensus 674 Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 674 ILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 88543322 1234444555553 4567788888888877644
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.5e-05 Score=78.55 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
-.+-.+..-+++.++-.|..|+++|.++... +... ...+++.+.|.+.+ +-++..|+-+..+|.. +++.
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~-- 173 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDV-- 173 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHH--
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHH--
Confidence 3455566778889999999999999998754 3322 23566777888888 9999999999988876 4443
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
++ +.++.+-.++.+.++-|+-+|..+|..++.++.. ++..|+..+..+.... +
T Consensus 174 --v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~-~-------------- 226 (355)
T 3tjz_B 174 --VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKS-P-------------- 226 (355)
T ss_dssp --HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSC-H--------------
T ss_pred --HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcC-h--------------
Confidence 22 5788888999888999999999999999876531 3445555554431100 0
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGLLCLA 393 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~~L~ 393 (594)
..+....+.+..++.++ ++ .....++.+.
T Consensus 227 ---------------------------------------------~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~ 256 (355)
T 3tjz_B 227 ---------------------------------------------FAYCMMIRVASRQLEDEDGS-----RDSPLFDFIE 256 (355)
T ss_dssp ---------------------------------------------HHHHHHHHHHTCC----------------------
T ss_pred ---------------------------------------------HHHHHHHHHHHHhccccchh-----hHHHHHHHHH
Confidence 11222234444444333 22 1234567777
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 394 KLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 394 ~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
..|++.++.|...|+.+|..+... ....+. .++..|..++.+.+ +.++-.|++.|..++...+..
T Consensus 257 ~~L~~~~~aVvyEa~k~I~~l~~~---~~~~~~-----------~a~~~L~~fLss~d-~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 257 SCLRNKHEMVVYEAASAIVNLPGC---SAKELA-----------PAVSVLQLFCSSPK-AALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp CCCCCSSHHHHHHHHHHHTC-------------------------CCCTHHHHHHSSS-SSSHHHHHHCC----------
T ss_pred HHHcCCChHHHHHHHHHHHhccCC---CHHHHH-----------HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHCcHH
Confidence 888888899999999999887631 121111 13344555666555 899999999999999766644
Q ss_pred hhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 474 ETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 474 ~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
-...-..+.+++.+.+..++.-|...|.+-
T Consensus 322 v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 322 VTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 445667788889999988888877777654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.3e-05 Score=74.47 Aligned_cols=181 Identities=13% Similarity=0.097 Sum_probs=124.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc-cCCCHHHHHHHHHHHHHhhCC--hhHHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK-ETASSEAQSAAATALYNIAND--QERVRVIV 237 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~-~~~~~~v~e~A~~aL~~La~~--~~~~~~iv 237 (594)
+...+++.+-..|..|+..|..+..+++.....-. ...++.|.++|. +.+ ..++..|+.+|+.|+.. +.....+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 55678889999999999999998876433210000 123667888884 777 99999999999999952 2211211
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
...+|+|+..+++.+..+|+.+..+|..++...+ . . ..++.|...|.+.+
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~----~--~ll~~l~~~l~~~~---------------------- 146 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L----E--AQQESIVESLSNKN---------------------- 146 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H----H--HHHHHHHHHTTCSC----------------------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H----H--HHHHHHHHHHcCCC----------------------
Confidence 2368999999999999999999999999987431 1 0 13445555554331
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccC-Chh--hHHHHHhhCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVA--NSRRISETKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~--~~~~i~e~g~l~~L~~ 394 (594)
| .++..++..|..+... .++ ....+ ...+|.|..
T Consensus 147 -------------------------------------~----~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~ 183 (242)
T 2qk2_A 147 -------------------------------------P----SVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVK 183 (242)
T ss_dssp -------------------------------------H----HHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHH
T ss_pred -------------------------------------h----HHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHH
Confidence 1 3466777788874322 232 12222 247899999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHH
Q 040681 395 LVEKEQGELQFNCLMTIMEITAA 417 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~ 417 (594)
+|.+.+.+++..|..++..|+..
T Consensus 184 ~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 184 TLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999888733
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00037 Score=73.63 Aligned_cols=261 Identities=16% Similarity=0.130 Sum_probs=161.5
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCC--hHHHHHhhccC---------------C-CHHHHHHHHH
Q 040681 161 YIAAIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGG--VPPLLKLLKET---------------A-SSEAQSAAAT 221 (594)
Q Consensus 161 lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~--I~~Lv~LL~~~---------------~-~~~v~e~A~~ 221 (594)
++..|.. ++.+.+.-++.+|..+.+. +++|..+.+.++ +|+++.+++.. . ...++.+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 5556655 3455566789999999987 899999987644 78887655421 0 2567889999
Q ss_pred HHHHhhCChhHHHHHHhcCCH--HHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHH-----hHHHHHHcCChhhHHHhhhc
Q 040681 222 ALYNIANDQERVRVIVSELGV--PTIVNVLSDS-IMKVQIQVASLVARMAEHDAL-----AQDDFARENVIRPLVTLLSF 293 (594)
Q Consensus 222 aL~~La~~~~~~~~iv~~g~i--~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~-----~~~~i~~~g~i~~Lv~lL~~ 293 (594)
++|.|+.+++..+.+...+.. +.|+.+++.. ..++..-+..+|.||...++. ..+.+...++ .+++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999998888888877643 6777888865 788999999999999876521 1223333344 456665543
Q ss_pred CCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHH---HHHHHHH
Q 040681 294 ETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKI---ACAEALW 370 (594)
Q Consensus 294 ~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~---~a~~aL~ 370 (594)
. .++|++....+.. .--....
T Consensus 330 r--------------------------------------------------------k~~Dedl~edl~~L~e~L~~~~~ 353 (480)
T 1ho8_A 330 R--------------------------------------------------------KYSDEELRQDISNLKEILENEYQ 353 (480)
T ss_dssp S--------------------------------------------------------CCSSHHHHHHHHHHHHHHHHHHH
T ss_pred C--------------------------------------------------------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 3 3344444333221 1111122
Q ss_pred HhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc-
Q 040681 371 MLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND- 449 (594)
Q Consensus 371 ~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s- 449 (594)
.+++ -++.+.. +..|-+.- .-..+.+.--++|+-. |..+. -.++..|.++|++
T Consensus 354 ~lts-fDeY~~E-l~sG~L~W--SP~H~se~FW~ENa~k-------------------f~e~~---~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 354 ELTS-FDEYVAE-LDSKLLCW--SPPHVDNGFWSDNIDE-------------------FKKDN---YKIFRQLIELLQAK 407 (480)
T ss_dssp TCCH-HHHHHHH-HHHTCCCC--CGGGGCHHHHHHHSGG-------------------GSSGG---GHHHHHHHHHHHHH
T ss_pred hccc-HHHHHHH-HhcCCccc--CCCccchhHHHHHHHH-------------------HHhcc---hHHHHHHHHHHhhh
Confidence 2211 1221111 11222110 0000111122333311 11111 1277888999974
Q ss_pred --------CCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 450 --------LDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 450 --------~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++++.+..-||-=||.+++..|... .|+=..+.++|.+.+++|+.+|..|+.++..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2347788899999999998766432 2677888899999999999999999998864
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.84 E-value=1.5e-05 Score=69.99 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..++..|.+.++.+|..|+++|..+... .++++|+++|++++ +.++..|+++|+++..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~-----------~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~--------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG--------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCH-----------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc---------
Confidence 45677888999999999999999988531 35899999999988 9999999999999863
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVAR 266 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~ 266 (594)
..+++.|+.+|++++..|+..|+++|.+
T Consensus 103 -~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 -ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2358999999998899999999998865
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0002 Score=69.58 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhccCC-hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 361 LKIACAEALWMLARGS-VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
++..|+.+|..|+.+- +.....+ ...++.++..+.+.+..++..|..+|.++. ... . ...+
T Consensus 73 V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~---~~~-~------------~~~l 134 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKRFSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIY---AST-S------------LEAQ 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHH---TTS-C------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HcC-C------------HHHH
Confidence 3566778888876321 1221211 236899999999889999999999998876 211 1 2347
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++.++..+++.+ +.++..++..|+.+........ ..++|.|+.+|.+.+++||..|..+|..++.
T Consensus 135 l~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 135 QESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 888899888654 9999999999999765432111 2678999999999999999999999999864
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0018 Score=61.58 Aligned_cols=213 Identities=14% Similarity=0.127 Sum_probs=150.9
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAND--QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ 275 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~ 275 (594)
+.+..|+.||.+.+ +.++.++..+|..+-.. +.-+..+++ ..++.++.++++.+..+.-.|..+|..|-.+.|-..
T Consensus 33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 35778889998888 99999999999998763 444555554 469999999999999999999999999988766555
Q ss_pred HHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCCh
Q 040681 276 DDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKP 355 (594)
Q Consensus 276 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp 355 (594)
..+.. .+..|.+++.++.
T Consensus 111 ~~y~K--l~~aL~dlik~~~------------------------------------------------------------ 128 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPD------------------------------------------------------------ 128 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCC------------------------------------------------------------
T ss_pred HHHHH--HHHHHHHHhcCCC------------------------------------------------------------
Confidence 56655 5667777766441
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChh
Q 040681 356 EVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPA 435 (594)
Q Consensus 356 ~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~ 435 (594)
..+...++..+..+....+. .+.+..+..|+.+.+..+|..+..++-|++...+ ++.+
T Consensus 129 ---~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~-D~~i----------- 186 (265)
T 3b2a_A 129 ---DMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA-DSGH----------- 186 (265)
T ss_dssp ---HHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS-SCCC-----------
T ss_pred ---chHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC-CHHH-----------
Confidence 12466788888887322211 2357888899999999999999999988874432 2211
Q ss_pred hHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc--------cCCCHHHHHHHHHH
Q 040681 436 AKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL--------SHRNQEVATEAAIA 499 (594)
Q Consensus 436 ~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL--------~~~~~~v~~~Aa~a 499 (594)
...+++.+-.+|++.| +.+++-|+.++-.+... +.. ..+++.+..++ -.+.+.++..|-..
T Consensus 187 ~~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~-pi~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDN-EFIVELALDVLEKALSF-PLL-ENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp GGGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTS-CCC-SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcC-ccc-HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 2336666777888775 99999999999998853 222 13333333322 45677777665443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0018 Score=66.58 Aligned_cols=235 Identities=11% Similarity=0.092 Sum_probs=146.3
Q ss_pred hHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 040681 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 200 I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~ 279 (594)
.+..++++.+.+ ...+.-.--.+.+++..++. .| =++..|.+=+.++++-+|..|.++|+++...+ .-+.
T Consensus 70 f~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-- 139 (355)
T 3tjz_B 70 FFAMTKLFQSND-PTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-- 139 (355)
T ss_dssp HHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH--
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH--
Confidence 455678999988 89988888888888875322 12 25778888899999999999999999996522 2111
Q ss_pred HcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHH
Q 040681 280 RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKI 359 (594)
Q Consensus 280 ~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~ 359 (594)
..+++-..|.+. + .
T Consensus 140 ---l~~~lk~~L~d~----~-----------------------------------------------------------p 153 (355)
T 3tjz_B 140 ---IERYMKQAIVDK----V-----------------------------------------------------------P 153 (355)
T ss_dssp ---HHHHHHHHHTCS----S-----------------------------------------------------------H
T ss_pred ---HHHHHHHHcCCC----C-----------------------------------------------------------H
Confidence 223333334332 1 1
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
.++..|+-+..+|...+++.. .+.+..+-.++.+.++.++.+|..+|.+|. ..+. . .
T Consensus 154 yVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~---~~d~---~------------a 210 (355)
T 3tjz_B 154 SVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVR---KNDR---L------------A 210 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH---TTCH---H------------H
T ss_pred HHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHH---hhch---H------------H
Confidence 346667777778877777743 267889999999999999999999998887 4332 1 2
Q ss_pred HHHHHHHHhcCC--ChhhHHHHHHHHHHhhcCC-hhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 440 VDQLLRVINDLD--SPTLQIPAIKSIGSLARTF-PARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 440 v~~Ll~lL~s~~--~~~v~~~a~~aL~~La~~~-~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
+..|+.-+.... ++-.+..-++.++.++... +.....+++.|...|++.++.|..||+.+|..+.. . ..
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~--~------~~ 282 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG--C------SA 282 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--C------CH
Confidence 233333333321 2444445555555555433 22234788888899999999999999999999843 1 01
Q ss_pred HHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 517 AIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 517 ~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
.+. ..++..|..+|.+.++ +|..||
T Consensus 283 ~~~-~~a~~~L~~fLss~d~niryvaL 308 (355)
T 3tjz_B 283 KEL-APAVSVLQLFCSSPKAALRYAAV 308 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHH
T ss_pred HHH-HHHHHHHHHHHcCCCchHHHHHH
Confidence 111 3467888888988887 888887
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.74 E-value=6.7e-05 Score=65.75 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhc
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLAR 468 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~ 468 (594)
++.|+.+|.++++.++..|+++|.++. ++ ..++.|++++++.+ +.|+..|+.+|+++.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~-----~~---------------~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~- 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ-----DE---------------RAVEPLIKLLEDDS-GFVRSGAARSLEQIG- 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC-----SH---------------HHHHHHHHHHHHCC-THHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC-----CH---------------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhC-
Confidence 689999999999999999999996653 21 15677888887655 999999999999986
Q ss_pred CChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 469 TFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 469 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
....++.|+.+|++.++.|+..|+++|.++
T Consensus 102 -----~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 102 -----GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 346799999999999999999999998764
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0014 Score=62.31 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=133.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc--CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEH--DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
+.+..|..+|.+.+..++.++..+|.++-.. +......+ ...++.++.++.+..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~d---------------------- 88 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQEN---------------------- 88 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCSTT----------------------
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhccc----------------------
Confidence 3578899999999999999999999999875 22233333 347888888886551
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhh
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
..+...|.++|..|-.+.|--...+. .....|..++.
T Consensus 89 -----------------------------------------Ekval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik 125 (265)
T 3b2a_A 89 -----------------------------------------EKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLE 125 (265)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTT
T ss_pred -----------------------------------------hhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhc
Confidence 12344567888887544432222222 25788888999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--h
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--T 475 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--~ 475 (594)
++++-+...++..+.-+ ..+ ++ .+.+++.+.+++.|. +..++..+++++.+++......+ .
T Consensus 126 ~~~~il~~eaae~Lgkl-kv~--------------~~-~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 126 SPDDMMRIETIDVLSKL-QPL--------------ED-SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp SCCHHHHHHHHHHHHHC-CBS--------------CC-CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred CCCchHHHHHHHHhCcC-Ccc--------------cc-hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 99999999999999654 111 11 355889999999544 49999999999999997554332 3
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++.-+-.+|++.++.+++.|..+|-++.+
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 677778889999999999999999999976
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0029 Score=63.76 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
.+.+++..|++++...++.++..|..+-.++......++..+|+..|++....++ .+.+-.+++||++|-.+.+.-..+
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccch
Confidence 5777889999999999999999999955566899999999999999999999988 999999999999998888887777
Q ss_pred H-hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHH-------cC---ChhhHHHhhh
Q 040681 237 V-SELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR-------EN---VIRPLVTLLS 292 (594)
Q Consensus 237 v-~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~-------~g---~i~~Lv~lL~ 292 (594)
+ ....|..+..++.+.+..|...|..+|..++.+++.+...+.+ .. -...|+.+|+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 7 4557888888999888999999999999999887654444332 11 1556667765
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00054 Score=67.17 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=120.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-hhccCchhHHHHHh-cCChHHHHHhh-ccCCCHHHHHHHHHHHHHhhCCh---hHH-H
Q 040681 162 IAAIQMGQLSDRIEAAIELAS-LAKDNDRNKKIIVE-EGGVPPLLKLL-KETASSEAQSAAATALYNIANDQ---ERV-R 234 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~-la~~~~~~~~~i~~-~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~La~~~---~~~-~ 234 (594)
-..+++.+-..|..|+..|.. ++.++++......+ ...+..|.+.| ++.+ ..++..|+.+|+.|+..- ... .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n-~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN-IQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhcccccccHH
Confidence 356789999999999999999 87654443200001 12366777788 5667 999999999999998521 111 2
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC----ChhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAREN----VIRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g----~i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
.. .-.+|+++..+++....|++.+..+|..++.+-+.. ...+ .++.|+..|.+..
T Consensus 101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~--------------- 159 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKT--------------- 159 (249)
T ss_dssp HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSS---------------
T ss_pred HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCC---------------
Confidence 22 125899999999989999999999999988742100 0011 2334444443321
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhh-HH--HHHhhC
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVAN-SR--RISETK 387 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~-~~--~i~e~g 387 (594)
| .++..++..|..+....... .. ......
T Consensus 160 --------------------------------------------~----~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~ 191 (249)
T 2qk1_A 160 --------------------------------------------P----QIRMECTQLFNASMKEEKDGYSTLQRYLKDE 191 (249)
T ss_dssp --------------------------------------------H----HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTT
T ss_pred --------------------------------------------h----HHHHHHHHHHHHHHHHcCCcchhHHHHHHHH
Confidence 1 23566666666654322210 11 111245
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHH
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAA 417 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~ 417 (594)
.+|.|.+++.+.+.+++..|..++..++..
T Consensus 192 iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 192 VVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999877633
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.013 Score=62.01 Aligned_cols=249 Identities=14% Similarity=0.191 Sum_probs=147.4
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC--HHHHHHhhcC---------------C--CHHHHHHHHH
Q 040681 202 PLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG--VPTIVNVLSD---------------S--IMKVQIQVAS 262 (594)
Q Consensus 202 ~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~--i~~Lv~lL~~---------------~--~~~v~~~aa~ 262 (594)
.++..|....+...+.-++.+|..|...++.|..+.+.++ +|+++.+++. + ...++-.+.-
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 3555565532256677899999999999999999987554 6777665441 1 3456778888
Q ss_pred HHHHHhhcCHHhHHHHHHcCCh--hhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccc
Q 040681 263 LVARMAEHDALAQDDFARENVI--RPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCS 340 (594)
Q Consensus 263 aL~~La~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~ 340 (594)
++|-|+- +++..+.+...+.. +.|+.+++...
T Consensus 251 ~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~--------------------------------------------- 284 (480)
T 1ho8_A 251 LIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITI--------------------------------------------- 284 (480)
T ss_dssp HHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred HHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhc---------------------------------------------
Confidence 9999987 44566666655532 45555554431
Q ss_pred cCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh----hh-HHHHHhhCcHHHHHHHhhh---CCHHHHHHHHHHHH
Q 040681 341 SRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV----AN-SRRISETKGLLCLAKLVEK---EQGELQFNCLMTIM 412 (594)
Q Consensus 341 s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~----~~-~~~i~e~g~l~~L~~LL~~---~~~~v~~~A~~aL~ 412 (594)
|.++.+.+..+|+|+....+ .. .+.++..+++ .+++.|.. .|+++... ...|.
T Consensus 285 -----------------KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~ed-l~~L~ 345 (480)
T 1ho8_A 285 -----------------KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQD-ISNLK 345 (480)
T ss_dssp -----------------SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHH-HHHHH
T ss_pred -----------------cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHH-HHHHH
Confidence 23566778889999865432 11 2233344554 45555543 35665542 22222
Q ss_pred HHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC--------C-hhhHHHHHHHHHHhhcCChhhhhccHHHHHH
Q 040681 413 EITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD--------S-PTLQIPAIKSIGSLARTFPARETRVIGPLVA 483 (594)
Q Consensus 413 nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~--------~-~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~ 483 (594)
+.- +.+ +..-+ -.+....=+.++. + .-.++.+ ..+......++..|++
T Consensus 346 e~L---~~~-------~~~lt-----sfDeY~~El~sG~L~WSP~H~se~FW~ENa--------~kf~e~~~~llk~L~~ 402 (480)
T 1ho8_A 346 EIL---ENE-------YQELT-----SFDEYVAELDSKLLCWSPPHVDNGFWSDNI--------DEFKKDNYKIFRQLIE 402 (480)
T ss_dssp HHH---HHH-------HHTCC-----HHHHHHHHHHHTCCCCCGGGGCHHHHHHHS--------GGGSSGGGHHHHHHHH
T ss_pred HHH---HHH-------HHhcc-----cHHHHHHHHhcCCcccCCCccchhHHHHHH--------HHHHhcchHHHHHHHH
Confidence 211 100 01000 1122222222111 0 1122221 1222233367899999
Q ss_pred hccC----------CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 484 HLSH----------RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 484 lL~~----------~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+|++ .++.+..=||.=|+.++. .+++.+..+-+-||=..+++|+.+.|+ |+.+||
T Consensus 403 iL~~~~~~~~~~~s~d~~~laVAc~Digefvr----~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL 468 (480)
T 1ho8_A 403 LLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTGGKADIMELLNHSDSRVKYEAL 468 (480)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHH
T ss_pred HHhhhccccccccCCCcceEEeecccHHHHHH----HCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence 9963 356777788999999987 246777766788888889999998888 999998
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0015 Score=63.94 Aligned_cols=132 Identities=7% Similarity=0.057 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhccCC--hhhH-HHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 361 LKIACAEALWMLARGS--VANS-RRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 361 l~~~a~~aL~~L~~~~--~~~~-~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
++..|+.+|..|+.+- +.+. .... -.+|.++..+......++..+..++..++... ++ . ... +...
T Consensus 77 v~~~A~~al~~la~~l~~~~f~~~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~--~~---~---~~~-~~l~ 145 (249)
T 2qk1_A 77 AVALAAQSVELICDKLKTPGFSKDYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYY--DP---L---ASS-GRNE 145 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCHHHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS--CT---T---CTT-CTTH
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--cc---c---ccC-CcHH
Confidence 3566788888876421 2222 2222 26888888888888899998888888777322 11 0 000 0023
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh-------hh-hccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA-------RE-TRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~-------~~-~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
.+++.|+..|++.+ +.+++.++.+|+.++...+. .- ..++|.|.++|.+.+.+||..|..+|..++
T Consensus 146 ~ll~~l~~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 146 DMLKDILEHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 48889999998764 99999999999999976542 12 578999999999999999999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.012 Score=68.13 Aligned_cols=256 Identities=17% Similarity=0.181 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh---HH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE---RV 233 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~---~~ 233 (594)
.+-+++..+...+...+..|+..|.++..++... ..+..+.+..|.+.+++.+ .. |.|+.++..|+.... ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCCc
Confidence 3445667777766677788888888887653111 1112356777888887765 23 999999999995321 11
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEH-DALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
+..+ .+.+|.+...+.+....|+..|..++..+... +|+.. ...+|.|+..|.+.. + |
T Consensus 90 e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~---k---------w--- 148 (986)
T 2iw3_A 90 EPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETN---K---------W--- 148 (986)
T ss_dssp HHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCC---C---------H---
T ss_pred ccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcccc---c---------h---
Confidence 2221 25788888888888889999888888887754 43222 225778887775441 0 0
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCL 392 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L 392 (594)
+.+..|...+..|+...++ +-...-...+|.+
T Consensus 149 -----------------------------------------------~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~ 180 (986)
T 2iw3_A 149 -----------------------------------------------QEKIAILAAFSAMVDAAKD-QVALRMPELIPVL 180 (986)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHhHH-HHHHhccchhcch
Confidence 2356677777777643332 2222223478999
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
...+.+..++++..|..++..+|.+- .|.|+ ..+++.|++.+.+.+ . .-.++..|+.+.=.
T Consensus 181 ~~~~~d~k~~v~~~~~~~~~~~~~~~-~n~d~------------~~~~~~~~~~~~~p~--~----~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 181 SETMWDTKKEVKAAATAAMTKATETV-DNKDI------------ERFIPSLIQCIADPT--E----VPETVHLLGATTFV 241 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHGGGC-CCTTT------------GGGHHHHHHHHHCTT--H----HHHHHHHHTTCCCC
T ss_pred HhhcccCcHHHHHHHHHHHHHHHhcC-CCcch------------hhhHHHHHHHhcChh--h----hHHHHHHhhcCeeE
Confidence 99998889999999999998887544 34433 337888998887532 2 34556666653211
Q ss_pred hh------hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 473 RE------TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 473 ~~------~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.+ .=++|.|.+-|..++..++++++..+.|++.
T Consensus 242 ~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 242 AEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred eeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 11 1346777888899999999999999999875
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.031 Score=56.25 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=68.7
Q ss_pred HHHhhccCCCHHHHHHHHHHHHH-hhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH-H
Q 040681 203 LLKLLKETASSEAQSAAATALYN-IANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA-R 280 (594)
Q Consensus 203 Lv~LL~~~~~~~v~e~A~~aL~~-La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~-~ 280 (594)
++.-|.+++ .+.+..+..-|.. +..|.+-...+++.+|+..|+++...++.+.+..+..++.+|-.+. ..-..+. .
T Consensus 123 iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHC
T ss_pred HHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCC
Confidence 344455666 7778888888887 6778899999999999999999999999999999999999998753 3333333 3
Q ss_pred cCChhhHHHhhhc
Q 040681 281 ENVIRPLVTLLSF 293 (594)
Q Consensus 281 ~g~i~~Lv~lL~~ 293 (594)
...|..+..++.+
T Consensus 201 ~~fI~~lyslv~s 213 (339)
T 3dad_A 201 SDTIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHcC
Confidence 3456666666653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.18 Score=58.29 Aligned_cols=237 Identities=17% Similarity=0.190 Sum_probs=151.6
Q ss_pred HHHHHHHHHhhccCch--hHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHHHHhh
Q 040681 174 IEAAIELASLAKDNDR--NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN--DQERVRVIVSELGVPTIVNVL 249 (594)
Q Consensus 174 ~~Aa~~L~~la~~~~~--~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~Lv~lL 249 (594)
..|+..+..++..... -...+ =.+.+|.++..+.+.. ..++..|..++..+.. .++.... .+|.|+..|
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~~~a~~~-----~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVNPVAIKA-----LLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSCGGGHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHh
Confidence 7788888888854321 11111 1256788888887777 8899988888888765 4444433 489999999
Q ss_pred cCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHH--cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhccccccc
Q 040681 250 SDS-IMKVQIQVASLVARMAEHDALAQDDFAR--ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVG 326 (594)
Q Consensus 250 ~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~ 326 (594)
.+. ....+..|..++..|+...+ ..+.. ...||.+-+.+-+.
T Consensus 143 ~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-------------------------------- 187 (986)
T 2iw3_A 143 VETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-------------------------------- 187 (986)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS--------------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC--------------------------------
Confidence 766 68899999999999987543 33332 12333333332111
Q ss_pred CCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc--CChhhHHHHHhhCcHHHHHHHhhhCCHHHH
Q 040681 327 SKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR--GSVANSRRISETKGLLCLAKLVEKEQGELQ 404 (594)
Q Consensus 327 ~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~--~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~ 404 (594)
|.+++..|..++-.+|. +|.++. ..+|.|++.+.+++ ++.
T Consensus 188 -------------------------------k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p~-~~~ 229 (986)
T 2iw3_A 188 -------------------------------KKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADPT-EVP 229 (986)
T ss_dssp -------------------------------SHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCTT-HHH
T ss_pred -------------------------------cHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcChh-hhH
Confidence 23456667777777663 455532 36899999998774 344
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhh--ccHHHHH
Q 040681 405 FNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARET--RVIGPLV 482 (594)
Q Consensus 405 ~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~--~~i~~Lv 482 (594)
+ |...|+.-|.+++ .++|...-+++.|.+-|.... ..++..++-.+.|+|.-.+.... -++|.|+
T Consensus 230 ~-~~~~l~~~tfv~~-----------v~~~~l~~~~p~l~r~l~~~~-~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~ 296 (986)
T 2iw3_A 230 E-TVHLLGATTFVAE-----------VTPATLSIMVPLLSRGLNERE-TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLL 296 (986)
T ss_dssp H-HHHHHTTCCCCSC-----------CCHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTH
T ss_pred H-HHHHhhcCeeEee-----------ecchhHHHHHHHHHhhhccCc-chhheeeEEEEcchhhhcCCHHHHhhhhhhhh
Confidence 3 4555543332222 223444457888888887554 88889999999999975443332 4555555
Q ss_pred Hhc-----cCCCHHHHHHHHHHHHHh
Q 040681 483 AHL-----SHRNQEVATEAAIALQKF 503 (594)
Q Consensus 483 ~lL-----~~~~~~v~~~Aa~aL~nl 503 (594)
.-| .-.+|++|.-|..|+..+
T Consensus 297 p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 297 PGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 444 346888888887777766
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0066 Score=59.11 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=42.6
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVP 243 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~ 243 (594)
++.+.++++|..|+..| ....|..++++++ +.++..++..| . .+
T Consensus 58 ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~-~~VR~~aA~~L---~--------------~~ 101 (244)
T 1lrv_A 58 YLADPFWERRAIAVRYS------------------PVEALTPLIRDSD-EVVRRAVAYRL---P--------------RE 101 (244)
T ss_dssp GTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSS-HHHHHHHHTTS---C--------------SG
T ss_pred HhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcC-HHHHHHHHHHC---C--------------HH
Confidence 45778888888888753 1233566777777 88888777642 1 13
Q ss_pred HHHHhhcCCCHHHHHHHHH
Q 040681 244 TIVNVLSDSIMKVQIQVAS 262 (594)
Q Consensus 244 ~Lv~lL~~~~~~v~~~aa~ 262 (594)
.|..++++++..||..++.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVAD 120 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 5666777777888877776
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.84 E-value=3.6 Score=47.77 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc-----CCChhhHHHHHHHHHHhhcCChhhh--
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND-----LDSPTLQIPAIKSIGSLARTFPARE-- 474 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s-----~~~~~v~~~a~~aL~~La~~~~~~~-- 474 (594)
..+..|..+|..++.. .. +. + .+.+++.+...+.. +.++..++.|+.+++.++.......
T Consensus 376 s~R~aa~~~L~~l~~~---~~---~~-v------~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~ 442 (960)
T 1wa5_C 376 TRRRACTDFLKELKEK---NE---VL-V------TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG 442 (960)
T ss_dssp CHHHHHHHHHHHHHHH---CH---HH-H------HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB
T ss_pred CcHHHHHHHHHHHHHH---cc---hh-H------HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC
Confidence 5677777778766622 21 10 1 12244444444542 2347889999999999985431111
Q ss_pred -h------ccHHHHH----HhccCC---CHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhH
Q 040681 475 -T------RVIGPLV----AHLSHR---NQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQL 539 (594)
Q Consensus 475 -~------~~i~~Lv----~lL~~~---~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~ 539 (594)
. .+.+.++ ..|.+. ++-++..|+|+|+.++.. +++++-. ..++.+++.|...+. ||.
T Consensus 443 ~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~---~~~~~l~-----~~l~~l~~~L~d~~~~V~~ 514 (960)
T 1wa5_C 443 VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ---LTKAQLI-----ELMPILATFLQTDEYVVYT 514 (960)
T ss_dssp CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG---SCHHHHH-----HHHHHHHHHTTCSCHHHHH
T ss_pred cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh---CCHHHHH-----HHHHHHHHHhCCCChhHHH
Confidence 1 3333333 334555 889999999999999751 2233222 245677777776655 777
Q ss_pred hHH
Q 040681 540 HGL 542 (594)
Q Consensus 540 ~Al 542 (594)
.|.
T Consensus 515 ~A~ 517 (960)
T 1wa5_C 515 YAA 517 (960)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.77 Score=53.44 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh---c--cCCCHHHHHHHHHHHHHhhCC-hhHHHHHHhcCC
Q 040681 168 GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL---K--ETASSEAQSAAATALYNIAND-QERVRVIVSELG 241 (594)
Q Consensus 168 ~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL---~--~~~~~~v~e~A~~aL~~La~~-~~~~~~iv~~g~ 241 (594)
.+-..+..|+.+++.++.+-.... ...++.++.++ . +++ +.++..++++|+.++.. ..+...+ ...
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~-~~vr~~a~~~l~~~~~~l~~~~~~l--~~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLN-VKLLGTALETMGSYCNWLMENPAYI--PPA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSC-HHHHHHHHHHHHHTHHHHC----CH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccC-HHHHHHHHHHHHHHHHHHhcCHHHH--HHH
Confidence 344577778888998886533221 13345455443 2 235 99999999999999862 1111111 124
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 242 VPTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 242 i~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
++.|+..|. +.++..|++++.+++..
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRD 573 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHH
Confidence 666777772 78999999999999963
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=93.96 E-value=1.7 Score=50.51 Aligned_cols=250 Identities=12% Similarity=0.100 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhc------cCCCHHHHHHHHHHHHHhhCChhHHHHHHhc-----C
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLK------ETASSEAQSAAATALYNIANDQERVRVIVSE-----L 240 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~------~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~-----g 240 (594)
.|..|...|..++.... +.+.. -.++.+-+.|. +.+ ...++.|..+++.++........-... .
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~-w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKN-WKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----C-HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchh-HHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 45566677777775422 22211 11222333344 334 678899999999997421100000000 1
Q ss_pred CHHH----HHHhhcCC---CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 241 GVPT----IVNVLSDS---IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 241 ~i~~----Lv~lL~~~---~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
..+. ++..|.++ .+-+|..++|+|+.++..- ....+. ..++.++..|.+. +
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~--~~l~~l~~~L~d~----~-------------- 509 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLI--ELMPILATFLQTD----E-------------- 509 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHH--HHHHHHHHHTTCS----C--------------
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHH--HHHHHHHHHhCCC----C--------------
Confidence 1122 22234555 8899999999999998742 122222 2466666666432 1
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-------hhh-HHHHH-
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-------VAN-SRRIS- 384 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-------~~~-~~~i~- 384 (594)
..++..|+.||.+++... ++. +..+.
T Consensus 510 ---------------------------------------------~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 510 ---------------------------------------------YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 134778999999987521 111 11121
Q ss_pred -hhCcHHHHHHHhhhCC---HH--HHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc----CCChh
Q 040681 385 -ETKGLLCLAKLVEKEQ---GE--LQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND----LDSPT 454 (594)
Q Consensus 385 -e~g~l~~L~~LL~~~~---~~--v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s----~~~~~ 454 (594)
-...+..|..++.... .. ....+..+|+.+...... .+. |....+++.|...+.. .++..
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~-------~~~---p~~~~l~~~L~~~l~~~~~~~~~~~ 614 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED-------SIQ---PLFPQLLAQFIEIVTIMAKNPSNPR 614 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT-------TTG---GGHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHH-------hhh---hHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 1335667777777641 11 224556666665533221 122 2344566666666653 33356
Q ss_pred hHHHHHHHHHHhhcCC-hhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 455 LQIPAIKSIGSLARTF-PAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 455 v~~~a~~aL~~La~~~-~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
....++.+|+.+++.. +.. ...++|.+...|.....+....+...+..+
T Consensus 615 ~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 615 FTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 6677889999988762 211 125678888888665555555555554444
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.77 E-value=3.4 Score=40.21 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhccCchhH--H-HHHhcCC-hHHHHHhhccCCCHHHHHHHHHHHHHhhCC--hh----H
Q 040681 163 AAIQMGQLSDRIEAAIELASLAKDNDRNK--K-IIVEEGG-VPPLLKLLKETASSEAQSAAATALYNIAND--QE----R 232 (594)
Q Consensus 163 ~~L~~~~~~~~~~Aa~~L~~la~~~~~~~--~-~i~~~g~-I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~--~~----~ 232 (594)
.+|.+.+=..|.+|...|..+....+... . .+...+. ++.+-+.+++.+ ..++..++.+|..++.. .. .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 57888888899999999988765432211 1 1111233 445556888888 99999999999988742 11 1
Q ss_pred HHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhc
Q 040681 233 VRVIVSELGVPTIVN-VLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 233 ~~~iv~~g~i~~Lv~-lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
.....-...+|.|+. .|.+....++..+..++..++..
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 112222345777775 57888899999998888877653
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.33 E-value=2.9 Score=48.50 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh---c--CCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL---S--DSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL---~--~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~L 287 (594)
...++.++.+++.++....... ...++.++.++ . +.++.++..++|+|+.++..-......+. .+++.|
T Consensus 478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l 551 (971)
T 2x1g_F 478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLL 551 (971)
T ss_dssp CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHH
Confidence 6789999999999987322111 12334444333 2 34889999999999999853111111111 123333
Q ss_pred HHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHH
Q 040681 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAE 367 (594)
Q Consensus 288 v~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~ 367 (594)
+..|. . .++..|+.
T Consensus 552 ~~~l~-~-----------------------------------------------------------------~v~~~A~~ 565 (971)
T 2x1g_F 552 VRGLN-S-----------------------------------------------------------------SMSAQATL 565 (971)
T ss_dssp HHHHH-S-----------------------------------------------------------------SCHHHHHH
T ss_pred HHHhC-h-----------------------------------------------------------------HHHHHHHH
Confidence 33331 1 12567888
Q ss_pred HHHHhccCChhhHHHHH--hhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHH
Q 040681 368 ALWMLARGSVANSRRIS--ETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL 443 (594)
Q Consensus 368 aL~~L~~~~~~~~~~i~--e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~L 443 (594)
|+.+++... +..+. -...+..|..++.++ +.+.+.....+++.+..... ..+... ....+++.+
T Consensus 566 al~~l~~~~---~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~--------~~~~ll~~l 633 (971)
T 2x1g_F 566 GLKELCRDC---QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPK--------YLDIIVSPC 633 (971)
T ss_dssp HHHHHHHHC---HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHH---HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHH--------HHHHHHHHH
Confidence 999987422 22222 123456666777763 46778888888887763221 111111 112244444
Q ss_pred HH----HHhcCC-ChhhHHHHHHHHHHhhcCChh--------------------hhhccHHHHHHhcc--CCCHHHHHHH
Q 040681 444 LR----VINDLD-SPTLQIPAIKSIGSLARTFPA--------------------RETRVIGPLVAHLS--HRNQEVATEA 496 (594)
Q Consensus 444 l~----lL~s~~-~~~v~~~a~~aL~~La~~~~~--------------------~~~~~i~~Lv~lL~--~~~~~v~~~A 496 (594)
+. ++.... +++.+.....++..|+..... ....+++.+..++. ..+.++.+.+
T Consensus 634 ~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~ 713 (971)
T 2x1g_F 634 FEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAA 713 (971)
T ss_dssp HHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 43 333321 232333344444444321110 01246677777764 3477999999
Q ss_pred HHHHHHhcC
Q 040681 497 AIALQKFAS 505 (594)
Q Consensus 497 a~aL~nl~~ 505 (594)
++++.+++.
T Consensus 714 ~~~~~~~~~ 722 (971)
T 2x1g_F 714 CSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=92.92 E-value=5 Score=46.39 Aligned_cols=94 Identities=13% Similarity=0.184 Sum_probs=64.0
Q ss_pred cCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh---ccCCCHHHHHHHHHHHHHhhCC-hhHHHHHHhcCCH
Q 040681 167 MGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL---KETASSEAQSAAATALYNIAND-QERVRVIVSELGV 242 (594)
Q Consensus 167 ~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL---~~~~~~~v~e~A~~aL~~La~~-~~~~~~iv~~g~i 242 (594)
..+...+..|+.+++.++.+-.... ...++.++..| .+++ +.++..++++++.++.. .++. ... ...+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~-~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISN-VQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCS-HHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 3455667778888888886533211 12234444433 2334 88999999999999863 2222 222 4688
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 243 PTIVNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 243 ~~Lv~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
+.|+..|.+ +.|+..|+++|.++|..
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~ 557 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE 557 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH
Confidence 999988865 78999999999999963
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=9.8 Score=38.15 Aligned_cols=203 Identities=11% Similarity=0.109 Sum_probs=141.6
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+...+.+..|+..|..=+-+.|..++.+..++-.... |.=.+.|+.+.... + -+..++.
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~---------~~~~p~v~Yl~~~p---e--------il~~L~~ 132 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQI---------GTRTPTVEYICTQQ---N--------ILFMLLK 132 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCB---------TTBCHHHHHHHTCT---H--------HHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhccc---------CCCCchhHHHHcCH---H--------HHHHHHH
Confidence 44557889999999998899999999999999876442 23334444443321 0 1111221
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+ +++|+ .+.-++.+..-|..++..++.+...+.+-.+.+
T Consensus 133 g------------------------------------Ye~~d-----iAl~~G~mLRecir~e~la~~iL~~~~f~~fF~ 171 (341)
T 1upk_A 133 G------------------------------------YESPE-----IALNCGIMLRECIRHEPLAKIILWSEQFYDFFR 171 (341)
T ss_dssp G------------------------------------GGSTT-----THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHH
T ss_pred h------------------------------------hccch-----hHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 1 11111 112234443434467888999999889999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
.++.++=++-..|..++..|- ..+..+.. .|..++ ...+....-++|.+.+ .-.+..+++.||.|-.+..+..
T Consensus 172 yv~~~~FdiasDAf~TfkelL---t~Hk~lva-efL~~n--yd~Ff~~y~~Ll~S~N-YVTkRQSlKLLgelLldr~N~~ 244 (341)
T 1upk_A 172 YVEMSTFDIASDAFATFKDLL---TRHKLLSA-EFLEQH--YDRFFSEYEKLLHSEN-YVTKRQSLKLLGELLLDRHNFT 244 (341)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH---HSSHHHHH-HHHHHT--HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHSGGGHH
T ss_pred HhcCCCchHHHHHHHHHHHHH---hccHHHHH-HHHHHh--HHHHHHHHHHHhcCCc-chhHHHHHHHHHHHHhCchHHH
Confidence 999999899888888888774 45555555 366544 4568888899888766 8889999999999986543322
Q ss_pred h--------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 475 T--------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 ~--------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
. .-+..+..+|.+.+..+|.+|-...-=|++
T Consensus 245 vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 245 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 1 346788889999999999999998887876
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.34 E-value=8.3 Score=37.12 Aligned_cols=153 Identities=12% Similarity=0.083 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccch
Q 040681 257 QIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYS 336 (594)
Q Consensus 257 ~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~ 336 (594)
..+|...|..+|+ +|+.|..|.+++..--|--.|+..+ ..
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~s---k~------------------------------------ 112 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVS---KT------------------------------------ 112 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCC---CS------------------------------------
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhcccc---CC------------------------------------
Confidence 3566677788888 5589999999887666666666552 11
Q ss_pred hccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc-CChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 040681 337 EYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR-GSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEIT 415 (594)
Q Consensus 337 ~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~-~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~ 415 (594)
|.+ ..++-.+.++++.|.. +++++...+.+...+|..++.++.|++-.|.-|...+..|-
T Consensus 113 -------------r~f------E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 113 -------------RPF------EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp -------------HHH------HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred -------------Ccc------hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 000 2456667777777764 45777788888999999999999999999998988888765
Q ss_pred HHhcCCHHHHHHhhhcCCh----hhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 416 AAAESNADLRRAAFKTNSP----AAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 416 ~~~~~~~~~r~~~~~~~~~----~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
..+..+.- ....+ ++..++..++.-+...+++.+....+++--.|+.+..+++
T Consensus 174 ---~dd~GL~Y---iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~ 230 (268)
T 2fv2_A 174 ---LDDTGLAY---ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRARE 230 (268)
T ss_dssp ---HSHHHHHH---HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred ---ccchhHHH---HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHH
Confidence 22222111 11111 1233555566666666678888999999999986655443
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.8 Score=44.76 Aligned_cols=99 Identities=7% Similarity=0.049 Sum_probs=75.9
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
.+|.|+.-+.+..+.++..+-.++..++.+. .+ ..+.+.++.-+++.+ +.+++.|+..++++-
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~--~~--------------~~v~~~l~~g~ksKN-~R~R~e~l~~l~~li 195 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV--GP--------------LKMTPMLLDALKSKN-ARQRSECLLVIEYYI 195 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--CH--------------HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--CH--------------HHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 5788888887778889888877776665332 11 236777888887665 999999999999988
Q ss_pred cCChhhhhccH---HHHHHhccCCCHHHHHHHHHHHHHh
Q 040681 468 RTFPARETRVI---GPLVAHLSHRNQEVATEAAIALQKF 503 (594)
Q Consensus 468 ~~~~~~~~~~i---~~Lv~lL~~~~~~v~~~Aa~aL~nl 503 (594)
..+.......+ +.+.+++.+.+..|+..|..++..+
T Consensus 196 ~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 196 TNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 64433344678 9999999999999999998887654
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=91.59 E-value=6.2 Score=45.56 Aligned_cols=209 Identities=12% Similarity=0.118 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhh---cCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHH
Q 040681 213 SEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVL---SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVT 289 (594)
Q Consensus 213 ~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL---~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~ 289 (594)
...++.++++++.++...... ....++.++..+ .++++.++..++|+++.++..-......+ ...++.|+.
T Consensus 463 w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~ 536 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLH 536 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHH
Confidence 788999999999998631110 011233344333 33578899999999999986311111222 235555555
Q ss_pred hhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHH
Q 040681 290 LLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEAL 369 (594)
Q Consensus 290 lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL 369 (594)
.|.+. .++..|+.+|
T Consensus 537 ~l~~~-----------------------------------------------------------------~V~~~A~~al 551 (963)
T 2x19_B 537 ALGNP-----------------------------------------------------------------ELSVSSVSTL 551 (963)
T ss_dssp HTTCG-----------------------------------------------------------------GGHHHHHHHH
T ss_pred HhCCc-----------------------------------------------------------------hHHHHHHHHH
Confidence 55321 1356788889
Q ss_pred HHhccCChhhHHHHH--hhCcHHHHHHHhhhC--CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHH
Q 040681 370 WMLARGSVANSRRIS--ETKGLLCLAKLVEKE--QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLR 445 (594)
Q Consensus 370 ~~L~~~~~~~~~~i~--e~g~l~~L~~LL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~ 445 (594)
.+++... ...+. -...+..|..++..+ +.+.+.....+++.+.... .++-+. +....+++.+..
T Consensus 552 ~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~--~~~~~~-------~~~~~l~~~l~~ 619 (963)
T 2x19_B 552 KKICREC---KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL--QVEEIL-------KNLHSLISPYIQ 619 (963)
T ss_dssp HHHHHHT---GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS--CHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC--CHHHHH-------HHHHHHHHHHHH
Confidence 9887421 11121 122445555666653 4567777778887765221 111111 112335555554
Q ss_pred HHh----cCCChhhHH---HHHHHHHHhhcCChh--------------------------hhhccHHHHHHhcc--CCCH
Q 040681 446 VIN----DLDSPTLQI---PAIKSIGSLARTFPA--------------------------RETRVIGPLVAHLS--HRNQ 490 (594)
Q Consensus 446 lL~----s~~~~~v~~---~a~~aL~~La~~~~~--------------------------~~~~~i~~Lv~lL~--~~~~ 490 (594)
.+. ...+++.+. ....+|+.+.+.... ....+++.+.++|. ..+.
T Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 699 (963)
T 2x19_B 620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDA 699 (963)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCch
Confidence 443 222343333 344445444432210 00134555555552 4567
Q ss_pred HHHHHHHHHHHHhc
Q 040681 491 EVATEAAIALQKFA 504 (594)
Q Consensus 491 ~v~~~Aa~aL~nl~ 504 (594)
++.+.++.++..++
T Consensus 700 ~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 700 QVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988864
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=13 Score=37.29 Aligned_cols=203 Identities=14% Similarity=0.158 Sum_probs=133.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHH----HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKK----IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERV 233 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~----~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~ 233 (594)
+..++..|..=+-+.|.+++....++.+.....+- .+.. --..|.-|++..+++++-..+-..|+.+..++...
T Consensus 80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 44466677777889999999888888776443222 2221 23333334444333667777888899999998888
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCC---hhhHHHhhhcCCcCCCccCccchhhHH
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENV---IRPLVTLLSFETFVDDPRANSGKQSIH 310 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~~~~~v~~~~si~ 310 (594)
..|...+.+..+.+....++-++-..|..++..|-..+......+...+- ....-+||.+++
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~N--------------- 222 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN--------------- 222 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS---------------
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCc---------------
Confidence 88888888888999999999999999999999886655433223322221 223333443331
Q ss_pred HHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhh----HHHHHhh
Q 040681 311 TIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVAN----SRRISET 386 (594)
Q Consensus 311 ~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~----~~~i~e~ 386 (594)
-..++.+...|+.+-. +..+ .+.+.+.
T Consensus 223 ------------------------------------------------YVTkRQSlKLLgelLl-dr~N~~vM~~Yis~~ 253 (341)
T 1upk_A 223 ------------------------------------------------YVTKRQSLKLLGELLL-DRHNFTIMTKYISKP 253 (341)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCH
T ss_pred ------------------------------------------------chhHHHHHHHHHHHHh-CchHHHHHHHHhCCH
Confidence 1235666777777632 3333 2334455
Q ss_pred CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 387 g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
.-+..++.||++....+|..|-...--..+-....+.+.+
T Consensus 254 ~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~ 293 (341)
T 1upk_A 254 ENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 293 (341)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHH
Confidence 6789999999999999999998887665555555555555
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=91.31 E-value=4.5 Score=47.55 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP 434 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~ 434 (594)
+..+.+||+|+ |.+. .++.|.+++.. ....++..|+++|..+. ...+..
T Consensus 457 ~~~~LkaLGN~--g~p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~---~~~p~~---------- 512 (1056)
T 1lsh_A 457 IVLALKALGNA--GQPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---KRDPRK---------- 512 (1056)
T ss_dssp HHHHHHHHHHH--TCGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---GTCHHH----------
T ss_pred HHHHHHHhhcc--CChh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhh---hhchHH----------
Confidence 45678999998 6665 57788887752 12467888999997765 444421
Q ss_pred hhHHHHHHHHHHHhc-CCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhcc-CCCHHHHHHHHHHHHHhcCCCCc
Q 040681 435 AAKAVVDQLLRVIND-LDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLS-HRNQEVATEAAIALQKFASPENF 509 (594)
Q Consensus 435 ~~~~~v~~Ll~lL~s-~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~Aa~aL~nl~~~~~~ 509 (594)
+-+.++.+..+ ..++++|..|+..|..-. + ....+..+...|. +.+.+|..-....|.+++...+|
T Consensus 513 ----v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P--~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 513 ----VQEIVLPIFLNVAIKSELRIRSCIVFFESK---P--SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp ----HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---C--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred ----HHHHHHHHhcCCCCChHHHHHHHHHHHHHC---c--CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 33445666643 233888988888775432 1 2356777777774 47888888888888888875553
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.20 E-value=3.8 Score=39.83 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=68.5
Q ss_pred CcHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 387 KGLLCLAK-LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 387 g~l~~L~~-LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
..++.|+. .|.+....++..+..++..++...... ..+++.++..+.+.+ +.++..++..|..
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---------------~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~ 165 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---------------TQSVELVIPFFEKKL-PKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---------------HHHHHHHGGGGGCSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhccC-HHHHHHHHHHHHH
Confidence 34566654 356667788888888886655222111 225566666666544 8999999999988
Q ss_pred hhcCChhhh---h----ccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 466 LARTFPARE---T----RVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 466 La~~~~~~~---~----~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+-..+.... . .+++.+..+|.+.++.||.+|..++..+-
T Consensus 166 ~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 876432211 1 24567778889999999999999887763
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.91 Score=44.34 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC-hHHHHHhhccCCCHHHHHHHHHHHHHhhC---ChhHHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGG-VPPLLKLLKETASSEAQSAAATALYNIAN---DQERVRVI 236 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~-I~~Lv~LL~~~~~~~v~e~A~~aL~~La~---~~~~~~~i 236 (594)
+...|.+.|...+..|+..|......+++ ..+...+. ++.+.--+.+.+ ..+...+..+|..+.. +.+.+-.-
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N-~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETN-PAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCC-HHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhccccchH
Confidence 55677788888899999998877654332 12211122 222221233556 8888888888777632 11111000
Q ss_pred Hh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhh
Q 040681 237 VS-ELGVPTIVNVLSDSIMKVQIQVASLVARMAE 269 (594)
Q Consensus 237 v~-~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~ 269 (594)
.+ .-.+|.|+.=++++...+|+.+-.++..|+.
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~ 161 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD 161 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 00 1258999999999999999999998888765
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=89.82 E-value=15 Score=42.72 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc----CCChhhHHHHHHHHHHhhcCChhhhhcc
Q 040681 402 ELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND----LDSPTLQIPAIKSIGSLARTFPARETRV 477 (594)
Q Consensus 402 ~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s----~~~~~v~~~a~~aL~~La~~~~~~~~~~ 477 (594)
...+.++.+|..++ ++-..... .+...++..+.+++.|..++.+ .+.+.|+..++.+++..+.-+.. ....
T Consensus 458 ~~~EaaL~~l~~ia---E~i~~~~~-~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-~~~~ 532 (980)
T 3ibv_A 458 QLIEFALYETYIFG---EGLRGPDA-FFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-ESAA 532 (980)
T ss_dssp HHHHHHHHHHHHTT---TTCCSGGG-TBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-CCTT
T ss_pred HHHHHHHHHHHHHH---hhcccccc-ccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-Cchh
Confidence 44567777776655 43211001 0011122334577777777652 22378999999999999965442 2345
Q ss_pred HHHHHHhc------cCCCHHHHHHHHHHHHHhcC
Q 040681 478 IGPLVAHL------SHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 478 i~~Lv~lL------~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+++++..+ .+.+..|+..|+.++.+|+.
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 55555544 45678899999999999965
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.04 E-value=19 Score=35.66 Aligned_cols=98 Identities=4% Similarity=0.085 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhh--CcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHH
Q 040681 362 KIACAEALWMLARGSVANSRRISET--KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAV 439 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~--g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~ 439 (594)
+-.+++++.|+.. ++..++.+... .++..+...+.+.+..++..++..+.|++.......+. .....+
T Consensus 165 ~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~---------~~~~~l 234 (304)
T 3ebb_A 165 QLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI---------EGKAQC 234 (304)
T ss_dssp HHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH---------HHHHHH
T ss_pred HHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc---------hHHHHH
Confidence 4457899999974 55556655532 24455555555567899999999999998543221111 012235
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHhhcC
Q 040681 440 VDQLLRVINDLDSPTLQIPAIKSIGSLART 469 (594)
Q Consensus 440 v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~ 469 (594)
+..+..++....+.+..-.++-+||+|...
T Consensus 235 l~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 235 LSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 566667776666688899999999999954
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=87.09 E-value=5 Score=47.03 Aligned_cols=132 Identities=8% Similarity=0.024 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhh-----CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhh
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEK-----EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAA 436 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~ 436 (594)
.+.++.|++.++.+-.+....-.-..+++.|+.+++. ...-++..++|+|...+.....+++. .
T Consensus 470 ~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-----------L 538 (1023)
T 4hat_C 470 INTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-----------L 538 (1023)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-----------H
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-----------H
Confidence 5667888888764433221212223467788888764 12234556789997766444444422 2
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh--------hccHHHHHH----hccCCCHHHHHHHHHHHHHhc
Q 040681 437 KAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE--------TRVIGPLVA----HLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 437 ~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~--------~~~i~~Lv~----lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
+.++..|+..+.... +.++..|+.++.+||..-...- ...++.++. ....-+..-...+..+++.++
T Consensus 539 ~~vl~~L~~~l~~~~-~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 539 RTVILKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 336777777664333 7899999999999996422111 113454444 334456666777888888887
Q ss_pred C
Q 040681 505 S 505 (594)
Q Consensus 505 ~ 505 (594)
.
T Consensus 618 ~ 618 (1023)
T 4hat_C 618 S 618 (1023)
T ss_dssp T
T ss_pred H
Confidence 6
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=86.18 E-value=46 Score=38.95 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=68.3
Q ss_pred cHHHHHHHhhh----CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 388 GLLCLAKLVEK----EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 388 ~l~~L~~LL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
.+..+..|+++ .++.++..+..++..|..-...+.. . ......+.+.+.|...+.+.+ ..-+..++++|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~-----~-c~~~~v~~i~~~l~~~~~~~~-~~~~~~~LkaL 464 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTV-----S-CPDELLQPLHDLLSQSSDRAK-EEEIVLALKAL 464 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCS-----S-CCGGGTHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCC-----C-CCHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHh
Confidence 45666666654 3456777777777666522211100 0 011123456677777777665 67778999999
Q ss_pred HHhhcCChhhhhccHHHHHHhcc-------CCCHHHHHHHHHHHHHhcC
Q 040681 464 GSLARTFPARETRVIGPLVAHLS-------HRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 464 ~~La~~~~~~~~~~i~~Lv~lL~-------~~~~~v~~~Aa~aL~nl~~ 505 (594)
||+.. ...++.|.+++. +....++.+|++||.++++
T Consensus 465 GN~g~------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 465 GNAGQ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp HHHTC------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred hccCC------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 99973 356888888873 2356799999999999987
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=84.53 E-value=3.9 Score=43.99 Aligned_cols=103 Identities=9% Similarity=0.107 Sum_probs=70.6
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCC-hhhHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDS-PTLQIPAIKSIG 464 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~-~~v~~~a~~aL~ 464 (594)
.++++.++..|.+.+++|+.-|+.+|.-++ ... ....++..+-..|.+.++ ....-.....|.
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA----~p~------------~l~~LL~iLWd~L~~LDDLSASTgSVMdLLA 361 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP----ITD------------SLDLVLEKCWKNIESEELISVSKTSNLSLLT 361 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----CSS------------THHHHHHHHHHHHHTCCSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhc----chh------------hHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 456788888889899999999999996554 111 123366677777766554 223344555666
Q ss_pred HhhcCChh--hhhccHHHHHHhccCCCHHHHHHHHHHHHHhc
Q 040681 465 SLARTFPA--RETRVIGPLVAHLSHRNQEVATEAAIALQKFA 504 (594)
Q Consensus 465 ~La~~~~~--~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~ 504 (594)
.|+..... .....+|.|...|.+.-..||..+..+|..|.
T Consensus 362 kL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 362 KIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 66643321 11267888889999999999999999888775
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=84.12 E-value=2.2 Score=50.05 Aligned_cols=106 Identities=8% Similarity=0.022 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhcc-----CCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHH
Q 040681 169 QLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKE-----TASSEAQSAAATALYNIANDQERVRVIVSELGVP 243 (594)
Q Consensus 169 ~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~-----~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~ 243 (594)
+=..+..++++++.++..-......-.=...++.|+.++.. +. ..++..++|+||..+.--....... ...+.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 45566777899999986533321211123567888888864 22 4455567799998775211111111 12345
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHH
Q 040681 244 TIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279 (594)
Q Consensus 244 ~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~ 279 (594)
.|+..+.+.++.+++.|++++.+||. .|+..+.
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~ 576 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFV 576 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 55666666678999999999999997 5666664
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.97 E-value=16 Score=36.15 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChH----HHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhc--CCHHHH
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVP----PLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSE--LGVPTI 245 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~----~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~--g~i~~L 245 (594)
.+.-++.-|+-++.+ +.....+.+.+.-. .++..+.+...+..+.-++++++|+-.++..+..+... ..++.+
T Consensus 118 ~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 118 IVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 344444444444433 44333333332222 23344443333777899999999999988888877742 244555
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhc
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEH 270 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~ 270 (594)
...+.+.+..++..++..+.|++..
T Consensus 197 ~~~~~~~nknl~iA~ATl~~NlAv~ 221 (304)
T 3ebb_A 197 IELKSGSNKNIHIALATLALNYSVC 221 (304)
T ss_dssp HGGGSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHH
Confidence 5555566889999999999999874
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=83.27 E-value=21 Score=33.98 Aligned_cols=131 Identities=9% Similarity=0.052 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 360 KLKIACAEALWMLARGSVANSRRISETKGLLCLAK-LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~-LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
.++..|+..|..+ .... ..++.+.. +-....=.|++.++.++.+++... ++ ..
T Consensus 86 eVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~--~p--------------e~ 139 (240)
T 3l9t_A 86 QVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI--EY--------------KK 139 (240)
T ss_dssp HHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH--CT--------------TT
T ss_pred HHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc--CH--------------HH
Confidence 4566777777766 3111 14555555 334455689999999998877311 11 01
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHhhcC--ChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHH
Q 040681 439 VVDQLLRVINDLDSPTLQIPAIKSIGSLART--FPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSK 516 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~--~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~ 516 (594)
.++.+.....+.+ ..++..|+..+.--+.. +...-..+++.|-.+..+.+..||+..+++|..++- .+ ++-..
T Consensus 140 ~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK-~~---Pd~V~ 214 (240)
T 3l9t_A 140 ALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK-KF---PDLVK 214 (240)
T ss_dssp THHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT-TC---HHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh-hC---HHHHH
Confidence 3455666666555 88998888776433321 111112456777777789999999999999999976 44 46666
Q ss_pred HHHHc
Q 040681 517 AIIEF 521 (594)
Q Consensus 517 ~i~~~ 521 (594)
.+++.
T Consensus 215 ~~~~~ 219 (240)
T 3l9t_A 215 IELKN 219 (240)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=82.22 E-value=9.8 Score=40.05 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=77.4
Q ss_pred HhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHH
Q 040681 165 IQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPT 244 (594)
Q Consensus 165 L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~ 244 (594)
...|+...|.-|+.-|....+.-|.... .+|..++.|..+.+ ..++.+|...|..+|.+ +....+ ...
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~-~~i~ki-----aDv 104 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDED-VSIRRQAIKELPQFATG-ENLPRV-----ADI 104 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT-TCHHHH-----HHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh-hhhhhH-----HHH
Confidence 3567899999999999888887777644 46788999999988 99999999999999998 665555 457
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhhcCH
Q 040681 245 IVNVLSDSIMKVQIQVASLVARMAEHDA 272 (594)
Q Consensus 245 Lv~lL~~~~~~v~~~aa~aL~~La~~~~ 272 (594)
|+++|...++.-...+-++|..|-..++
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dp 132 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDA 132 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcCh
Confidence 8999998877777777777777766665
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.99 E-value=5.5 Score=38.35 Aligned_cols=99 Identities=9% Similarity=0.097 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC----CHHHHHHHHHHHHHhhC--ChhHHHHHHhcCCHHHH
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA----SSEAQSAAATALYNIAN--DQERVRVIVSELGVPTI 245 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~----~~~v~e~A~~aL~~La~--~~~~~~~iv~~g~i~~L 245 (594)
-...|+.-|..+|.+ ++.|..+++++..-.|-.+|...+ .+.++..+.++++.|.. |++....+.+.+.+|..
T Consensus 72 RVcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 345677777888875 899999999988777777776543 14678889999999986 55667777789999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhhcC
Q 040681 246 VNVLSDSIMKVQIQVASLVARMAEHD 271 (594)
Q Consensus 246 v~lL~~~~~~v~~~aa~aL~~La~~~ 271 (594)
++.++.|+.-.+..|+.++.++-.++
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999997643
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=80.94 E-value=20 Score=41.76 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhccCchhHHHHH-hcCCh----HHHHHhhc-----cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCC
Q 040681 172 DRIEAAIELASLAKDNDRNKKIIV-EEGGV----PPLLKLLK-----ETASSEAQSAAATALYNIANDQERVRVIVSELG 241 (594)
Q Consensus 172 ~~~~Aa~~L~~la~~~~~~~~~i~-~~g~I----~~Lv~LL~-----~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~ 241 (594)
....|+.+|..++..-..+...+. +...+ +.|..+++ .+. +.++..+.++++..+..-.. +...
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~h-p~V~~~~~~~l~rys~~~~~-----~~~~ 532 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPH-PLVQLLYMEILVRYASFFDY-----ESAA 532 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCC-HHHHHHHHHHHHHTGGGGGT-----CCTT
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhc-----Cchh
Confidence 344456677766654222111110 11233 34444544 344 99999999999998863221 2345
Q ss_pred HHHHHHhhcC------CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhh
Q 040681 242 VPTIVNVLSD------SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292 (594)
Q Consensus 242 i~~Lv~lL~~------~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~ 292 (594)
+++++..+-+ ++..|+..|+.++.++|.. ++..+ .+-++.++..+.
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~---~~~~L--~~~~~~il~~l~ 584 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS---IKKQV--VNYTESSLAMLG 584 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH---TTTTC--SSSHHHHHHHTT
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH---hhHHh--hhHHHHHHHHHH
Confidence 6666665544 4678999999999999973 44333 234555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 594 | ||||
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-17 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-10 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-16 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-06 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 7e-12 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 8e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-10 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 2e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 7e-06 |
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.0 bits (198), Expect = 7e-17
Identities = 47/413 (11%), Positives = 114/413 (27%), Gaps = 24/413 (5%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQE 231
+ A + ++ K+ + + GG+ L+ LL+ + Q AAA AL N+
Sbjct: 19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTT 77
Query: 232 RVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL 291
+ G+ V++L + + + + +++ + + ++
Sbjct: 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVI 137
Query: 292 SFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRE 351
+ D +N ++ + V N + + R + + S
Sbjct: 138 IPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197
Query: 352 NEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTI 411
K C L L+ A + ++ F+
Sbjct: 198 VAASRCDDKSVENCMCVLHNLSYRLDAEVPT-RYRQLEYNARNAYTEKSSTGCFSNKSDK 256
Query: 412 MEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA---- 467
M + + + L ++ ++ +L
Sbjct: 257 MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316
Query: 468 ------RTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEF 521
+ + + + L N +V A L N ++
Sbjct: 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS------NMSRHPLLHRVMGN 370
Query: 522 NAVPPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELVSEA 574
P + RLL + + +L++ R ++A P+L + +
Sbjct: 371 QVFPEVTRLLTSHTGNTSN-----SEDILSSACYTVRNLMASQPQLAKQYFSS 418
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 3e-15
Identities = 43/419 (10%), Positives = 117/419 (27%), Gaps = 42/419 (10%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+ AA L +L + NK + G+ + LL+ T ++E Q L+N+++ E
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 233 VRVIVSELGVPTIVNVLSD---------------SIMKVQIQVASLVARMAEHDALAQDD 277
++++ V+ +V + ++ DA Q
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSE 337
+I L+ + ++ + S+
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCD-------DKSVENCMCVLHNLSYRLDAEVPTRYRQL 233
Query: 338 YCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVE 397
++R+ K K+ + + S + + + L+
Sbjct: 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293
Query: 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQI 457
K + + ++ A++ + K + + + +
Sbjct: 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLI----GLKEKGLPQIARLLQSGNSDVVR 349
Query: 458 PAIKSIGSLARTFPARE---TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLC--T 512
+ +++R +V + L+ + I + N +
Sbjct: 350 SGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
Query: 513 EHSKAIIEFNAVPPLMRLLRGNDRTQLHGLALEQARVLTALEGADRTVVAQHPELKELV 571
+ +K + + ++ L R + + A +L+ + EL+ ++
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAA---RLLLSDM--------WSSKELQGVL 457
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 42/342 (12%), Positives = 98/342 (28%), Gaps = 19/342 (5%)
Query: 200 VPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELG-VPTIVNVLSDSIMKVQI 258
+P ++ L + Q+ A + + E + V +LG + +V++L VQ
Sbjct: 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 259 QVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKE 318
A + + + + R+N IR V+LL + + + ++
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAE--IQKQLTGLLWNLSSTDEL 120
Query: 319 MEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA 378
E+ + + G + RE PEV L L+
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN----ATGCLRNLSSADAG 176
Query: 379 NSRRISETKGLLCLAKLVEKEQGELQ---------FNCLMTIMEITAAAESNADLRRAAF 429
+ + + L V+ + L + A +
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236
Query: 430 KTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRN 489
N+ K+ + + + P + + + + I + +
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296
Query: 490 QEVATEAAIALQKFASPENFLCTEH--SKAIIEFNAVPPLMR 529
++ EA + + L + ++ +P + R
Sbjct: 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR 338
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.5 bits (194), Expect = 2e-16
Identities = 69/454 (15%), Positives = 136/454 (29%), Gaps = 43/454 (9%)
Query: 147 PIASNDPMLSW-VWSYIAAIQMGQLSDRIEAAIELASLA-KDNDRNKKIIVEEGGVPPLL 204
I SN ++W V + I L +++A L ++ I+ G +P +
Sbjct: 3 DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62
Query: 205 KLLKETASSEAQSAAATALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASL 263
L +T S Q +A AL NIA E+ + +V +P +++L+ + Q
Sbjct: 63 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 122
Query: 264 VARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNS 323
+ +A + +D + I PL+ LL D G T N KN
Sbjct: 123 LGNIAGDGSAFRDLVIKHGAIDPLLALL---AVPDLSTLACGYLRNLTWTLSNLCRNKNP 179
Query: 324 FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRI 383
L + ++ + + + + +
Sbjct: 180 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 239
Query: 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQL 443
T+ + L + + ++ A L
Sbjct: 240 GATELPIVTPALRAIGNIVTGTDEQTQKV------------------IDAGALAVFPSLL 281
Query: 444 LRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKF 503
++ + + G + ++ LV LS + + EAA A+ +
Sbjct: 282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 341
Query: 504 ASPENFLCTEHSKAIIEFNAVPPLMRLLR-GNDRTQLHGL-ALEQ--------------A 547
S E ++ + PLM LL + + L A+ +
Sbjct: 342 TSGGT---VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS 398
Query: 548 RVLTALEGADRTVVAQHPELKELVSEALYHLNLY 581
++ G D+ Q E + + +L + Y
Sbjct: 399 IMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 40/370 (10%), Positives = 109/370 (29%), Gaps = 46/370 (12%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+ E+A L ++A K +V+ G +P + LL + ++ A +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 233 VRVIVSELGVPTIVNVL-----SDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287
+++ + ++ +L S + ++ + + A A E ++ L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKE-------------MEKNSFVGSKNYRPYL 334
V LL + + E + + +
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 335 YSEYCSSRSGQNRKDRENEKPEVKIK--------LKIACAEALWMLARGSVANSRRISET 386
+ Q +K + V ++ + + G +++
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313
Query: 387 KGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRV 446
+ L ++ K + Q I + + +++ L+ +
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNY--TSGGTVEQIVYLVHCG------IIEPLMNL 365
Query: 447 INDLDSPTLQIPAIKSIGSLARTFPA-----------RETRVIGPLVAHLSHRNQEVATE 495
++ D+ +Q+ + +I ++ + E + + A H N+ V
Sbjct: 366 LSAKDTKIIQV-ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKA 424
Query: 496 AAIALQKFAS 505
+ ++K+ S
Sbjct: 425 SLNLIEKYFS 434
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 4e-13
Identities = 23/121 (19%), Positives = 51/121 (42%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
+AA+ + L+K I+ V +++ ++ T E A L+N+++ +E
Sbjct: 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+ I G+P +V +L + V + + + H A+ ++ +V LL+
Sbjct: 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153
Query: 293 F 293
Sbjct: 154 K 154
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.7 bits (158), Expect = 7e-12
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 155 LSWVWSYIAAIQMGQLSDRIEAAIE-LASLAKDNDRNKKIIVEEGGVPPLLKLLKETASS 213
S + ++ ++ + +E L LA+D N+ +I +P ++LL +
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLY-SPIE 474
Query: 214 EAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMA 268
Q AA L +A D+E I +E + +L V A+++ RM+
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 4e-10
Identities = 58/453 (12%), Positives = 121/453 (26%), Gaps = 48/453 (10%)
Query: 173 RIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER 232
A L +L+ + I + GG+P L+K+L S A T + + +
Sbjct: 77 ARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135
Query: 233 VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
+ G+ +V +L+ + +K + +A + ++ + LV ++
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195
Query: 293 FETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSK------------NYRPYLYSEYCS 340
T+ S + ++ NK + S
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255
Query: 341 SRSGQNRKDRENEKPEVKI------KLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394
+ + V++ + A L L + N + + G+ L +
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Query: 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPT 454
V + + VV L +
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
Query: 455 LQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTE- 513
A P RE I LV L +Q+ ++ + E E
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 514 ----------------HSKAIIEFNAVPPLMRLLR-GNDRTQLHGLAL-------EQARV 549
+ I N +P ++LL + Q + ++A
Sbjct: 436 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 495
Query: 550 LTALEGADRTVVA----QHPELKELVSEALYHL 578
EGA + ++ + + L+ +
Sbjct: 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 22/156 (14%)
Query: 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKET------- 210
+ + + I+A + L N + E+G +P L++LL
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416
Query: 211 --------------ASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKV 256
E AL+ +A D VI +P V +L I +
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI 476
Query: 257 QIQVASLVARMAEHDALAQDDFARENVIRPLVTLLS 292
Q A ++ +A+ A + E PL LL
Sbjct: 477 QRVAAGVLCELAQDKE-AAEAIEAEGATAPLTELLH 511
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 8e-07
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 176 AAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIA-NDQERVR 234
A + L + D + + +P L KLL + + AA ++ ++ + R
Sbjct: 1 AVVNLINYQDDAE------LATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHA 53
Query: 235 VIVSELGVPTIVNVLSDSI-MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSF 293
++ S V IV + ++ ++ A + ++ H + I LV +L
Sbjct: 54 IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGS 112
Query: 294 E 294
Sbjct: 113 P 113
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.1 bits (144), Expect = 3e-10
Identities = 63/416 (15%), Positives = 136/416 (32%), Gaps = 31/416 (7%)
Query: 162 IAAIQMGQLSDRIEAAIELAS-LAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAA 220
+ + +++ A ++ L++++ ++++ G VP L++ ++E Q AA
Sbjct: 82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAA 141
Query: 221 TALYNIA-NDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFA 279
AL NIA + +V+V VP + +L ++V+ Q + +A +D
Sbjct: 142 WALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 201
Query: 280 RENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYC 339
+ N + P++ L + ++++ N G K +
Sbjct: 202 QCNAMEPILGLFNSNK--------------PSLIRTATWTLSNLCRGKKPQPDWSVVSQA 247
Query: 340 SSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE 399
+ + E ++ + + + L + LV+
Sbjct: 248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307
Query: 400 QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPA 459
N + T + L +SP + + N T QI A
Sbjct: 308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 367
Query: 460 IKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAII 519
+ + +I PLV L + EA A+ +S + + ++
Sbjct: 368 V------------IDANLIPPLVKLLEVAEYKTKKEACWAISNASS-GGLQRPDIIRYLV 414
Query: 520 EFNAVPPLMRLLRGNDRTQLHGLALEQ-ARVLTALEGADRTVVAQHPELKELVSEA 574
+ PL LL D ++ + L+ +L E E + + +A
Sbjct: 415 SQGCIKPLCDLLEIAD-NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA 469
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 26/244 (10%)
Query: 163 AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATA 222
A Q +R A LA L ++ D N + G+ L+ E ++ + AA
Sbjct: 24 EAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 82
Query: 223 LYNIANDQERVRVIVSELGV--PTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAR 280
+ + + ++ V LG + + D+ V+++ ++ + F R
Sbjct: 83 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR 142
Query: 281 ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCS 340
+ L+ + + + + + +N VG ++ L S
Sbjct: 143 LDGFSVLMRAMQQQV--------------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188
Query: 341 SRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQ 400
+ + + AL L R E + L L +L+
Sbjct: 189 QQLVALVRTEHSP-------FHEHVLGALCSLVTDFPQGVRECREPE--LGLEELLRHRC 239
Query: 401 GELQ 404
LQ
Sbjct: 240 QLLQ 243
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 594 | |||
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.97 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.92 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.9 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.84 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.77 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.19 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.17 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.12 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.84 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.77 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.66 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.25 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.22 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.14 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.06 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.89 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.83 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.8 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.71 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.59 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.32 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.1 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.94 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.97 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 94.24 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.82 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.02 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.0 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 91.4 |
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-31 Score=281.42 Aligned_cols=402 Identities=18% Similarity=0.211 Sum_probs=305.4
Q ss_pred CcccCCcc-hHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHH
Q 040681 147 PIASNDPM-LSWVWSYIAAIQMGQLSDRIEAAIELASLAKD-NDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALY 224 (594)
Q Consensus 147 ~ia~~~~i-~~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~-~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~ 224 (594)
++.++++. ...|.++|..|++++++.+.+|+.+|+++... .......+++.|+||+|+++|++.+++++|..|+++|+
T Consensus 3 ~~~~~~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~ 82 (434)
T d1q1sc_ 3 DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 82 (434)
T ss_dssp CCCSTTSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 44454443 34599999999999999999999999988653 22234678899999999999976554899999999999
Q ss_pred HhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCc
Q 040681 225 NIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRAN 303 (594)
Q Consensus 225 ~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v 303 (594)
+++. +++.+..+++.|++|.|+.+|.++++++++.++++|+|++..++.++..+.+.|+++.|+.++.........
T Consensus 83 ~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~--- 159 (434)
T d1q1sc_ 83 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA--- 159 (434)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC---
T ss_pred HHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccch---
Confidence 9987 567899999999999999999999999999999999999998889999999999999999999876321110
Q ss_pred cchhhHHHH--HHHhhhhccccc----ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCCh
Q 040681 304 SGKQSIHTI--VQINKEMEKNSF----VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSV 377 (594)
Q Consensus 304 ~~~~si~~l--~l~~~~~~~~~~----~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~ 377 (594)
...++.. .+.+........ ...+.++.++.++ ..+|+ .++..++++|.+++..++
T Consensus 160 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-------------~~~~~----~~~~~a~~~l~~l~~~~~ 220 (434)
T d1q1sc_ 160 --CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-------------HHNDP----EVLADSCWAISYLTDGPN 220 (434)
T ss_dssp --HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-------------TCSCH----HHHHHHHHHHHHHTSSCH
T ss_pred --HHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-------------hcccc----chhhhHHhhhcccchhhh
Confidence 0111111 222222211110 0122233332222 12333 357788999999987777
Q ss_pred hhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHH
Q 040681 378 ANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQI 457 (594)
Q Consensus 378 ~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~ 457 (594)
+....+.+.|+++.|+.++.+++.+++..++.+|.+++ .+++..+.. +.. .++++.|..++.+.+ +.++.
T Consensus 221 ~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~---~~~~~~~~~-~~~-----~~~~~~l~~ll~~~~-~~v~~ 290 (434)
T d1q1sc_ 221 ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV---TGTDEQTQK-VID-----AGALAVFPSLLTNPK-TNIQK 290 (434)
T ss_dssp HHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTGGGGHHHHTTCSS-HHHHH
T ss_pred hhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH---hhhhHHHHH-HHh-----ccccchHHHhhcccc-hhhhH
Confidence 77888889999999999999999999999999999887 566655552 332 237788888888665 89999
Q ss_pred HHHHHHHHhhcCChhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc
Q 040681 458 PAIKSIGSLARTFPAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR 532 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~ 532 (594)
.++.+|++|+...... +.|+++.++.++.+.+++++.+|+++|.|++...+ .+....+.+.|++++|+++|.
T Consensus 291 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~---~~~~~~l~~~~~i~~L~~ll~ 367 (434)
T d1q1sc_ 291 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT---VEQIVYLVHCGIIEPLMNLLS 367 (434)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCcHHHHHHHhc
Confidence 9999999999766543 34899999999999999999999999999987444 477788999999999999999
Q ss_pred CCch-HhHhHH----HHHH--------HHHHHHHh---hhccccccccchHHHHHHHHHHhcccccc
Q 040681 533 GNDR-TQLHGL----ALEQ--------ARVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHA 583 (594)
Q Consensus 533 ~~~~-vq~~Al----~l~~--------~~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~ 583 (594)
++++ ++..++ .+.+ ......++ +......+|+++..+++..|..+|+.||+
T Consensus 368 ~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~ 434 (434)
T d1q1sc_ 368 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 8887 766665 1211 11222233 23333446888999999999999999996
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-27 Score=259.09 Aligned_cols=392 Identities=17% Similarity=0.191 Sum_probs=300.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhc-cCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAK-DNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~-~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~ 234 (594)
.+.+++..+.+++.+.+..|+..++.+.. .+......+++.|+||+|+++|+.+.+++++..|+++|+||+. ++....
T Consensus 77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35667888899999999999999998754 4445567889999999999999876558899999999999997 566788
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|+++.++.+|.+++.++++.++|+|+||+..++.++..+.+.|++++|+.++.+..... .....+ ++
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~------~~~~~~--~l 228 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL------IRTATW--TL 228 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHH------HHHHHH--HH
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHH------HHHHHH--HH
Confidence 8889999999999999999999999999999999988899999999999999999997652100 000111 33
Q ss_pred Hhhhhcccc-c---ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHH
Q 040681 315 INKEMEKNS-F---VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLL 390 (594)
Q Consensus 315 ~~~~~~~~~-~---~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~ 390 (594)
.++...... . ...++++.++.++ ..+|+ .+...++++|.+++.++++....+.+.|+++
T Consensus 229 ~nl~~~~~~~~~~~~~~~~l~~l~~~l-------------~~~d~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 291 (503)
T d1wa5b_ 229 SNLCRGKKPQPDWSVVSQALPTLAKLI-------------YSMDT----ETLVDACWAISYLSDGPQEAIQAVIDVRIPK 291 (503)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHT-------------TCCCH----HHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HHHhcCCccchHHHHHHHHHHHHHHHh-------------ccccH----HHHHHHHHHHHhhccCCchhhhhhhhhhhhh
Confidence 444432211 1 1334444444332 12343 3467789999999887788788899999999
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCC
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTF 470 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~ 470 (594)
.++.++.+++..++..++.+|.||+ .++...... +. +. ++++.|..++.+.+ +.++..++++|+|++...
T Consensus 292 ~l~~ll~~~~~~v~~~al~~l~nl~---~~~~~~~~~-~~-~~----~~l~~l~~ll~~~~-~~i~~~~~~~l~nl~~~~ 361 (503)
T d1wa5b_ 292 RLVELLSHESTLVQTPALRAVGNIV---TGNDLQTQV-VI-NA----GVLPALRLLLSSPK-ENIKKEACWTISNITAGN 361 (503)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HH-HT----THHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSC
T ss_pred hhhhcccCCchhhhhhHHHHHHHHH---HHHHHHHHh-hh-cc----chHHHHHHHhcCCC-HHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999997 555555442 23 22 37888999988665 899999999999999755
Q ss_pred hhh-----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH--
Q 040681 471 PAR-----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL-- 542 (594)
Q Consensus 471 ~~~-----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al-- 542 (594)
+.. +.++++.++.+|.+.+++++.+|+|+|+|++..++. ..+....+++.|++++|+.+|...+. +...+|
T Consensus 362 ~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~-~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~ 440 (503)
T d1wa5b_ 362 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 440 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccc-cHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 432 348999999999999999999999999999863321 24667888999999999999998877 555444
Q ss_pred --HH---HHH----------HHHHHHh---hhccccccccchHHHHHHHHHHhccccccc
Q 040681 543 --AL---EQA----------RVLTALE---GADRTVVAQHPELKELVSEALYHLNLYHAG 584 (594)
Q Consensus 543 --~l---~~~----------~~l~~Le---~~~~~~~~q~~~~~~l~~~a~~~l~~~~~~ 584 (594)
.+ ++. .+...++ +.+....+|++..++++..|..+|+.||+.
T Consensus 441 l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~ 500 (503)
T d1wa5b_ 441 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 500 (503)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 11 110 1112232 333445578888899999999999999974
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.6e-26 Score=251.48 Aligned_cols=308 Identities=17% Similarity=0.216 Sum_probs=261.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHH
Q 040681 156 SWVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVE-EGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVR 234 (594)
Q Consensus 156 ~~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~-~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~ 234 (594)
..|+.|+..|.++|..++..|+..|.++++. +..+..++. .|+|+.|+++|+..+++++++.|+++|++|+.+++.+.
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~ 95 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence 3588899999999999999999999999977 566666655 46799999999876559999999999999999999999
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+++.|++|+|+++|++++++++..|+++|++|+.+++..+..+.+.|++++|+.+|.+++
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------------------- 156 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN------------------- 156 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-------------------
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC-------------------
Confidence 9999999999999999999999999999999999988889999999999999999997652
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
..++..++.+|++++..+++.+..+.+.|+++.|+.
T Consensus 157 --------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 192 (529)
T d1jdha_ 157 --------------------------------------------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192 (529)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred --------------------------------------------hHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHH
Confidence 134677899999999888888888999999999999
Q ss_pred HhhhCC-HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh
Q 040681 395 LVEKEQ-GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR 473 (594)
Q Consensus 395 LL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~ 473 (594)
++..++ +.++..+++++.+++ .+++.+.. +.. .++++.|..++.+.+ ..++..+++++.+++......
T Consensus 193 ll~~~~~~~~~~~~~~~l~~ls----~~~~~~~~-~~~-----~g~~~~L~~ll~~~~-~~~~~~a~~~l~~ls~~~~~~ 261 (529)
T d1jdha_ 193 IMRTYTYEKLLWTTSRVLKVLS----VCSSNKPA-IVE-----AGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQ 261 (529)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHT----TSTTHHHH-HHH-----TTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHhhhhHHHHHHHHHHHhhhh----ccccccch-hhh-----hhhhhhHHHHhcccc-hhhhhhhhhHHHhccccccch
Confidence 997655 678889999999886 34456663 443 237889999998665 889999999999998654432
Q ss_pred h--hccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhcc--CCch-HhHhHH
Q 040681 474 E--TRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLR--GNDR-TQLHGL 542 (594)
Q Consensus 474 ~--~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~--~~~~-vq~~Al 542 (594)
. .++++.|++++.+++.+++..|+++|.|+++ ++ .+++..+.+.||++.|+.++. ++.+ +|..|+
T Consensus 262 ~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~-~~---~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~ 331 (529)
T d1jdha_ 262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NN---YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331 (529)
T ss_dssp SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-TC---HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc-ch---hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHH
Confidence 2 3889999999999999999999999999987 44 478888899999999999885 3334 666554
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-25 Score=244.32 Aligned_cols=381 Identities=14% Similarity=0.119 Sum_probs=286.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRV 235 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~ 235 (594)
.+..++..|++++++.+..|+++|.+++.+++..++.+.+.|+||+|+++|++++ ++++..++++|.+++. +++.+..
T Consensus 102 ~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~ 180 (529)
T d1jdha_ 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3667888999999999999999999999998999999999999999999999998 9999999999999997 6677888
Q ss_pred HHhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 236 IVSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
+.+.|++++|+.+|..+ ...++..+++++.+++. +++++..+.+.|++++|+.++.+++... ...+.. .+
T Consensus 181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~------~~~a~~--~l 251 (529)
T d1jdha_ 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRL------VQNCLW--TL 251 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHH------HHHHHH--HH
T ss_pred HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhh------hhhhhh--HH
Confidence 99999999999999766 67899999999999997 4578999999999999999997663110 000111 22
Q ss_pred Hhhhhccccc-ccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHH
Q 040681 315 INKEMEKNSF-VGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLA 393 (594)
Q Consensus 315 ~~~~~~~~~~-~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~ 393 (594)
.+++...... ...|.+++|+.++ ..+|+ .++..++++|++++.++++++..+.+.|+++.|+
T Consensus 252 ~~ls~~~~~~~~~~~~i~~Lv~ll-------------~~~~~----~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li 314 (529)
T d1jdha_ 252 RNLSDAATKQEGMEGLLGTLVQLL-------------GSDDI----NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp HHHHTTCTTCSCCHHHHHHHHHHT-------------TCSCH----HHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred Hhccccccchhhhhhcchhhhhhc-------------ccccH----HHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHH
Confidence 3333222111 1335555555433 12333 3577889999999988899999999999999999
Q ss_pred HHhh--hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCCh
Q 040681 394 KLVE--KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 394 ~LL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
.++. ++.++++.+++++|.+|+.........+. .+.. .++++.|+.++...++..++..++.+|++++....
T Consensus 315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~i~~-----~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~ 388 (529)
T d1jdha_ 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN-AVRL-----HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH-HHHH-----TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred HHHHhhhcchhHHHHHHHHhhcccchhhcchhhhh-hHHh-----cccchhHHHHHhccchHHHHHHHHHHHhhcchhhh
Confidence 9885 35578999999999999844333333444 2332 23688899999877767888999999999997654
Q ss_pred hh----hhccHHHHHHhccCCCH----------------------HHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChH
Q 040681 472 AR----ETRVIGPLVAHLSHRNQ----------------------EVATEAAIALQKFASPENFLCTEHSKAIIEFNAVP 525 (594)
Q Consensus 472 ~~----~~~~i~~Lv~lL~~~~~----------------------~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~ 525 (594)
.. +.|+++.|+++|.+... ++...++.+|.+++. ..+++..+.+.|+++
T Consensus 389 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~-----~~~~r~~~~~~~~i~ 463 (529)
T d1jdha_ 389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-----DVHNRIVIRGLNTIP 463 (529)
T ss_dssp GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHH
T ss_pred hhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc-----CHHHHHHHHHCCCHH
Confidence 43 24899999999965433 456667778888865 346677788999999
Q ss_pred HHHHhccCCch-HhHhHH--------------HHHHHHHHHHHhhhccccccccchHHHHHHHHHHhc
Q 040681 526 PLMRLLRGNDR-TQLHGL--------------ALEQARVLTALEGADRTVVAQHPELKELVSEALYHL 578 (594)
Q Consensus 526 ~Lv~lL~~~~~-vq~~Al--------------~l~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l 578 (594)
+|+++|+++++ +|..|+ .+...+++..|....+ -+++.++.-...|+.+|
T Consensus 464 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~---s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH---SRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhC---CCCHHHHHHHHHHHHHh
Confidence 99999998888 887765 1222333444432222 14677777777777664
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=4.8e-23 Score=216.97 Aligned_cols=348 Identities=17% Similarity=0.168 Sum_probs=258.5
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hhHHH
Q 040681 157 WVWSYIAAIQM-GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QERVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~-~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~~~~ 234 (594)
.++.|+..|+. ++++++..|+++|.+++.+++..+..+++.|++|+|+++|++++ .++++.|+++|+||+.+ ++.+.
T Consensus 57 ~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~~~~ 135 (434)
T d1q1sc_ 57 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRD 135 (434)
T ss_dssp CHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchHHHH
Confidence 36668888854 56789999999999999988899999999999999999999988 99999999999999984 56788
Q ss_pred HHHhcCCHHHHHHhhcCCC-----HHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhh--hcCCcCCCccCccchh
Q 040681 235 VIVSELGVPTIVNVLSDSI-----MKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLL--SFETFVDDPRANSGKQ 307 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~-----~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~v~~~~ 307 (594)
.+.+.|+++.|+.++..++ ......+++++.+++.+.+.........++++.|+.++ .+...+.+
T Consensus 136 ~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~-------- 207 (434)
T d1q1sc_ 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD-------- 207 (434)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHH--------
T ss_pred HHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhh--------
Confidence 8889999999999997652 34567788888888876543333333445666666654 33221111
Q ss_pred hHHHHHHHhhhhcccc----cccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHH
Q 040681 308 SIHTIVQINKEMEKNS----FVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRI 383 (594)
Q Consensus 308 si~~l~l~~~~~~~~~----~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i 383 (594)
+++ ++.++...... ..+.|++++++.+... .+ ..++..++.+|.+++.++++.+..+
T Consensus 208 a~~--~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~-------------~~----~~~~~~al~~l~~l~~~~~~~~~~~ 268 (434)
T d1q1sc_ 208 SCW--AISYLTDGPNERIEMVVKKGVVPQLVKLLGA-------------TE----LPIVTPALRAIGNIVTGTDEQTQKV 268 (434)
T ss_dssp HHH--HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-------------SC----HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHh--hhcccchhhhhhHHHHhhcccchhccccccc-------------ch----hhhhhchhhhhhhHHhhhhHHHHHH
Confidence 111 22333322211 1256677766654321 22 2457888999999998888888999
Q ss_pred HhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 384 SETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
.+.|+++.|+.++++.+++++..++++|.+++ ..+.+.... +.. .++++.++.++.+.+ ..++..|+++|
T Consensus 269 ~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~---~~~~~~~~~-i~~-----~~~i~~li~~l~~~~-~~v~~~a~~~l 338 (434)
T d1q1sc_ 269 IDAGALAVFPSLLTNPKTNIQKEATWTMSNIT---AGRQDQIQQ-VVN-----HGLVPFLVGVLSKAD-FKTQKEAAWAI 338 (434)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTCHHHHHHHHHSSC-HHHHHHHHHHH
T ss_pred HhccccchHHHhhcccchhhhHHHHHHHhhhc---cccchhHHH-Hhh-----hhhHHHHHHHHhccC-hHHHHHHHHHH
Confidence 99999999999999999999999999999997 556665552 332 237889999998766 89999999999
Q ss_pred HHhhcCChhh------hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCC-C-CccchhhHHHHHHcCChHHHHHhccCCc
Q 040681 464 GSLARTFPAR------ETRVIGPLVAHLSHRNQEVATEAAIALQKFASP-E-NFLCTEHSKAIIEFNAVPPLMRLLRGND 535 (594)
Q Consensus 464 ~~La~~~~~~------~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~-~-~~l~~~~~~~i~~~g~i~~Lv~lL~~~~ 535 (594)
+|++...+.. +.|++++|+.+|+++++++...+.++|.++..- + ..-+...+..+.+.||++.|-.|..+.+
T Consensus 339 ~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n 418 (434)
T d1q1sc_ 339 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN 418 (434)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSS
T ss_pred HHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCC
Confidence 9999755432 348899999999999999999999999988521 0 1001233455668899998877766666
Q ss_pred h-HhHhHH
Q 040681 536 R-TQLHGL 542 (594)
Q Consensus 536 ~-vq~~Al 542 (594)
+ ++..|.
T Consensus 419 ~~i~~~a~ 426 (434)
T d1q1sc_ 419 ESVYKASL 426 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 6 776665
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1e-23 Score=220.01 Aligned_cols=349 Identities=13% Similarity=0.142 Sum_probs=230.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~i 236 (594)
|+.+|..|++++++++..|+++|.++|.+++++++.|++.||||+|+++|++++ +++++.|+++|++|+. +++++..+
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 677999999999999999999999999999999999999999999999999988 9999999999999995 77889999
Q ss_pred HhcCCHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCcc--Ccc---chhhHH
Q 040681 237 VSELGVPTIVNVLSDS-IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPR--ANS---GKQSIH 310 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~--~v~---~~~si~ 310 (594)
++.|+++.|++++.+. +++++..++++|.+++..+ ..+..+... +++.++..+.......... ... ....+.
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 9999999999999765 8899999999999999865 455555443 4555555543221000000 000 000000
Q ss_pred HH---HHHhhhhcccccccCCCcccccchhccccCCCccccccccCC---hHHHHHHH-------------HHHHHHHHH
Q 040681 311 TI---VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEK---PEVKIKLK-------------IACAEALWM 371 (594)
Q Consensus 311 ~l---~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~d---p~~k~~l~-------------~~a~~aL~~ 371 (594)
.. ++.+....++ ..+...... |.....+. ..+...+..
T Consensus 161 ~~a~~~l~~~~~~~~-----------------------~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~ 217 (457)
T d1xm9a1 161 FNATGCLRNLSSADA-----------------------GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217 (457)
T ss_dssp HHHHHHHHHHTTSHH-----------------------HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCch-----------------------HHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 00 0000000000 000000000 00000000 000000100
Q ss_pred h--------------------------------------------------ccCChhhHHHHHhhCcHHHHHHHhhhC-C
Q 040681 372 L--------------------------------------------------ARGSVANSRRISETKGLLCLAKLVEKE-Q 400 (594)
Q Consensus 372 L--------------------------------------------------~~~~~~~~~~i~e~g~l~~L~~LL~~~-~ 400 (594)
. ...+......+.+.++++.++.++... +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~ 297 (457)
T d1xm9a1 218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297 (457)
T ss_dssp HTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccc
Confidence 0 000111122334456677777777554 4
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh---hc
Q 040681 401 GELQFNCLMTIMEITAAAES-NADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE---TR 476 (594)
Q Consensus 401 ~~v~~~A~~aL~nL~~~~~~-~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~---~~ 476 (594)
+.++..+.+++.+++..... ....++. ..... ++++.|+.++.+.+ +.++..++.+|++|+.+....+ .+
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~~~~----~~l~~L~~~l~~~~-~~v~~~a~~~l~~La~~~~~~~~i~~~ 371 (457)
T d1xm9a1 298 DATLEACAGALQNLTASKGLMSSGMSQL-IGLKE----KGLPQIARLLQSGN-SDVVRSGASLLSNMSRHPLLHRVMGNQ 371 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHH-HHTTS----CCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhccccchHHHHHH-HHHHc----CChHHHHhhhcCcc-HHHHHHHHHHHHHHhhChhHHHHHHHh
Confidence 67777888888877622211 1122221 22222 37889999998766 9999999999999998765433 27
Q ss_pred cHHHHHHhccC------CCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCc-h-HhHhHH
Q 040681 477 VIGPLVAHLSH------RNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGND-R-TQLHGL 542 (594)
Q Consensus 477 ~i~~Lv~lL~~------~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~-~-vq~~Al 542 (594)
+++.|+.+|.. .+.+++..|+.+|.|++. ++ +++++.+.+.||+++|++++.+.+ + ++..|.
T Consensus 372 ~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~-~~---~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~ 441 (457)
T d1xm9a1 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA-SQ---PQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT-TC---THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhc-CC---HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHH
Confidence 89999999943 346799999999999987 44 488999999999999999998654 4 666654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=7.8e-22 Score=212.84 Aligned_cols=311 Identities=14% Similarity=0.174 Sum_probs=255.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChh-HHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQE-RVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~-~~~~i 236 (594)
+.-++..|.+++.+.+..|+++|++++.+++.++..+.+.|++++|+.++.+.+ ..++..++|+|.+++.... .....
T Consensus 164 i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~~~~~~~~~~ 242 (503)
T d1wa5b_ 164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWS 242 (503)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC-HHHHHHHHHHHHHHhcCCccchHHH
Confidence 344667888999999999999999999998999999999999999999999988 9999999999999997543 33444
Q ss_pred HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 237 VSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
...+++|.|+.++.+.+++++..++|+|.+|+.++++....+.+.|+++.|+.++.++.
T Consensus 243 ~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--------------------- 301 (503)
T d1wa5b_ 243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--------------------- 301 (503)
T ss_dssp HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSC---------------------
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCc---------------------
Confidence 45789999999999999999999999999999988888888899999999999997652
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.+|++++.+++.....+.+.|+++.|..++
T Consensus 302 ------------------------------------------~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll 339 (503)
T d1wa5b_ 302 ------------------------------------------TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL 339 (503)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred ------------------------------------------hhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHh
Confidence 13466789999999988888888889999999999999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA---- 472 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~---- 472 (594)
.++++.++..++|+|.|++ .++++.... +.. .++++.++.++.+.+ ..++..|+++|.|++.....
T Consensus 340 ~~~~~~i~~~~~~~l~nl~---~~~~~~~~~-i~~-----~~~l~~li~~l~~~~-~~v~~~a~~~l~nl~~~~~~~~~~ 409 (503)
T d1wa5b_ 340 SSPKENIKKEACWTISNIT---AGNTEQIQA-VID-----ANLIPPLVKLLEVAE-YKTKKEACWAISNASSGGLQRPDI 409 (503)
T ss_dssp TCSCHHHHHHHHHHHHHHT---TSCHHHHHH-HHH-----TTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTTTCTHH
T ss_pred cCCCHHHHHHHHHHHHHHh---hccHHHHHH-HHH-----ccccchhHHhcccCC-hhHHHHHHHHHHHHHhcccccHHH
Confidence 9999999999999999997 566666663 432 237889999998776 89999999999999964432
Q ss_pred ----hhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCC-------CccchhhHHHHHHcCChHHHHHhccCCch-HhHh
Q 040681 473 ----RETRVIGPLVAHLSHRNQEVATEAAIALQKFASPE-------NFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLH 540 (594)
Q Consensus 473 ----~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~-------~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~ 540 (594)
.+.|++++|+.+|+..+.++...+..+|.++..-+ +.-.......+.+.||+..|-.|..+.+. ++..
T Consensus 410 ~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~ 489 (503)
T d1wa5b_ 410 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEK 489 (503)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHH
T ss_pred HHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 13489999999999999999999999988874200 00001234456788999998777766665 7665
Q ss_pred HH
Q 040681 541 GL 542 (594)
Q Consensus 541 Al 542 (594)
|.
T Consensus 490 A~ 491 (503)
T d1wa5b_ 490 AY 491 (503)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.2e-19 Score=186.71 Aligned_cols=261 Identities=16% Similarity=0.186 Sum_probs=195.9
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQD 276 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~ 276 (594)
+.||.||++|++++ +++|..|+++|+||+. ++++|..|++.|+||+|+++|++++++++..|+++|.+|+..+++++.
T Consensus 2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46999999999999 9999999999999996 678999999999999999999999999999999999999988889999
Q ss_pred HHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChH
Q 040681 277 DFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPE 356 (594)
Q Consensus 277 ~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~ 356 (594)
.+.+.|+++.|+.++.... +
T Consensus 81 ~i~~~g~v~~li~~l~~~~---~--------------------------------------------------------- 100 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTG---N--------------------------------------------------------- 100 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCC---C---------------------------------------------------------
T ss_pred HHHHCCChHHHHHHHhccC---c---------------------------------------------------------
Confidence 9999999999999986541 1
Q ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh----------------hhCCHHHHHHHHHHHHHHHHHhcC
Q 040681 357 VKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV----------------EKEQGELQFNCLMTIMEITAAAES 420 (594)
Q Consensus 357 ~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL----------------~~~~~~v~~~A~~aL~nL~~~~~~ 420 (594)
..++..++++|++++.. +.........| ++.++..+ ...+..++.+++++|.+++ .
T Consensus 101 --~~~~~~a~~~l~~l~~~-~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~----~ 172 (457)
T d1xm9a1 101 --AEIQKQLTGLLWNLSST-DELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS----S 172 (457)
T ss_dssp --HHHHHHHHHHHHHHHTS-SSTHHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHT----T
T ss_pred --HHHHHHHHHHHHHHHhh-hhhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHh----c
Confidence 13466788899999754 34344444443 33333332 2234677778888877654 1
Q ss_pred CHHHHHHhhhcCChh-----------------------------------------------------------------
Q 040681 421 NADLRRAAFKTNSPA----------------------------------------------------------------- 435 (594)
Q Consensus 421 ~~~~r~~~~~~~~~~----------------------------------------------------------------- 435 (594)
+.+.++. +....+.
T Consensus 173 ~~~~~~~-~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (457)
T d1xm9a1 173 ADAGRQT-MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251 (457)
T ss_dssp SHHHHHH-HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------
T ss_pred CchHHHH-HHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhh
Confidence 2222221 1111110
Q ss_pred -----------------------------hHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh----------hhhc
Q 040681 436 -----------------------------AKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA----------RETR 476 (594)
Q Consensus 436 -----------------------------~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~----------~~~~ 476 (594)
..++++.++.++....++.+++.+..++.+++..... .+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 331 (457)
T d1xm9a1 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331 (457)
T ss_dssp --------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSC
T ss_pred hhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcC
Confidence 1245566667776666678888899999999864321 1237
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
+++.|+++|.+.+++++.+++++|+|++. +.+.+..+. .+++++|+.+|...
T Consensus 332 ~l~~L~~~l~~~~~~v~~~a~~~l~~La~-----~~~~~~~i~-~~~i~~li~~L~~~ 383 (457)
T d1xm9a1 332 GLPQIARLLQSGNSDVVRSGASLLSNMSR-----HPLLHRVMG-NQVFPEVTRLLTSH 383 (457)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHT-----SGGGHHHHH-HHTHHHHHHTTTSC
T ss_pred ChHHHHhhhcCccHHHHHHHHHHHHHHhh-----ChhHHHHHH-HhhHHHHHHHHhcc
Confidence 89999999999999999999999999986 345555555 47899999999743
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.1e-19 Score=179.75 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=171.2
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHH-hhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcCCHH
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLK-LLKETASSEAQSAAATALYNIAN-DQERVRVIVSELGVP 243 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~-LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g~i~ 243 (594)
+..+.+.+..|+..|.+++.+ ..++..+...||+++|+. +|++++ ++++..|+++|++++. ++..+..+++.|++|
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~-~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~ 104 (264)
T d1xqra1 27 QAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 104 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 456778899999999999955 788999999999999986 677777 9999999999999998 566788999999999
Q ss_pred HHHHhhcC-CCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhccc
Q 040681 244 TIVNVLSD-SIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKN 322 (594)
Q Consensus 244 ~Lv~lL~~-~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~ 322 (594)
+|+++|.+ .++.++..++++|++|+.+++.++..+...|+++.|+.+|.++.
T Consensus 105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~--------------------------- 157 (264)
T d1xqra1 105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV--------------------------- 157 (264)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC---------------------------
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCc---------------------------
Confidence 99999975 48899999999999999999999999999999999999997762
Q ss_pred ccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHH
Q 040681 323 SFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGE 402 (594)
Q Consensus 323 ~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~ 402 (594)
..++..++.+|++++.++++.+..+.+.|+++.|+.+|++++++
T Consensus 158 ------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~ 201 (264)
T d1xqra1 158 ------------------------------------QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSP 201 (264)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCST
T ss_pred ------------------------------------hHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHH
Confidence 13467789999999888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 403 LQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 403 v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
++..|+++|.+|+ ..++..++
T Consensus 202 ~~~~a~~aL~~L~---~~~~~~~~ 222 (264)
T d1xqra1 202 FHEHVLGALCSLV---TDFPQGVR 222 (264)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHHH---hcCHHHHH
Confidence 9999999999997 55655544
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.1e-17 Score=165.24 Aligned_cols=190 Identities=14% Similarity=0.235 Sum_probs=164.3
Q ss_pred cCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhH
Q 040681 209 ETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVN-VLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPL 287 (594)
Q Consensus 209 ~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~-lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~L 287 (594)
..+ .+.++.|+.+|.+|+.+.+++..++..||+++++. +|++++++++..|+++|++++.+++.++..+...|++++|
T Consensus 28 ~~~-~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AAD-QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHH-HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 334 78899999999999999999999999999999986 7788899999999999999999999999999999999999
Q ss_pred HHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHH
Q 040681 288 VTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAE 367 (594)
Q Consensus 288 v~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~ 367 (594)
+.+|.+.. + ..++..+++
T Consensus 107 v~lL~~~~---~-----------------------------------------------------------~~v~~~a~~ 124 (264)
T d1xqra1 107 LRLLDRDA---C-----------------------------------------------------------DTVRVKALF 124 (264)
T ss_dssp HHHHHHCS---C-----------------------------------------------------------HHHHHHHHH
T ss_pred HHHhhcCC---C-----------------------------------------------------------HHHHHHHHH
Confidence 99997652 1 134778999
Q ss_pred HHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHH
Q 040681 368 ALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVI 447 (594)
Q Consensus 368 aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL 447 (594)
+|++++..++..+..+.+.|+++.|+.+|.+++..++.+++++|.+++.. +++.+. .+.. .++++.|+.+|
T Consensus 125 aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~---~~~~~~-~~~~-----~~~v~~L~~lL 195 (264)
T d1xqra1 125 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG---HPEHKG-TLCS-----MGMVQQLVALV 195 (264)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHH-HHHH-----TTHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc---cHHHHH-HHHH-----hhhHHHHHHHH
Confidence 99999998999999999999999999999999999999999999999843 444445 2432 23789999999
Q ss_pred hcCCChhhHHHHHHHHHHhhcCCh
Q 040681 448 NDLDSPTLQIPAIKSIGSLARTFP 471 (594)
Q Consensus 448 ~s~~~~~v~~~a~~aL~~La~~~~ 471 (594)
++.+ +.+++.|+.+|++|+...+
T Consensus 196 ~~~~-~~~~~~a~~aL~~L~~~~~ 218 (264)
T d1xqra1 196 RTEH-SPFHEHVLGALCSLVTDFP 218 (264)
T ss_dssp TSCC-STHHHHHHHHHHHHHTTCH
T ss_pred cCCC-HHHHHHHHHHHHHHHhcCH
Confidence 8765 9999999999999997554
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.3e-09 Score=117.75 Aligned_cols=321 Identities=17% Similarity=0.188 Sum_probs=215.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC--ChhHHHHHHhc
Q 040681 162 IAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN--DQERVRVIVSE 239 (594)
Q Consensus 162 v~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~--~~~~~~~iv~~ 239 (594)
...++..+..+|..++.+|..++..-. ..+.....+|.+..++++++ ++++..|+.+|..++. ..+......-.
T Consensus 248 ~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~~~~~l~~~~~~~~~~~ 323 (588)
T d1b3ua_ 248 RQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCE-AEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 334566778889888888888764311 22334467889999999988 9999999999998875 33344444445
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhh
Q 040681 240 LGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEM 319 (594)
Q Consensus 240 g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~ 319 (594)
..+|.+...+.+.+..++..++.++..++..- ..... ....++.+..++.+..
T Consensus 324 ~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~--~~~~~-~~~l~p~l~~~l~d~~------------------------ 376 (588)
T d1b3ua_ 324 QILPCIKELVSDANQHVKSALASVIMGLSPIL--GKDNT-IEHLLPLFLAQLKDEC------------------------ 376 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH--CHHHH-HHHTHHHHHHHHTCSC------------------------
T ss_pred HHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc--chhHH-HHHHHHHHHHHHHhhh------------------------
Confidence 67888899999999999999999888876421 11111 1235777777776541
Q ss_pred cccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhcc--CChhhHHHHHhhCcHHHHHHHhh
Q 040681 320 EKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLAR--GSVANSRRISETKGLLCLAKLVE 397 (594)
Q Consensus 320 ~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~--~~~~~~~~i~e~g~l~~L~~LL~ 397 (594)
+ .++..+..++..+.. +.... ....++.+..+++
T Consensus 377 -----------------------------------~----~v~~~~~~~l~~~~~~~~~~~~-----~~~ll~~l~~~~~ 412 (588)
T d1b3ua_ 377 -----------------------------------P----EVRLNIISNLDCVNEVIGIRQL-----SQSLLPAIVELAE 412 (588)
T ss_dssp -----------------------------------H----HHHHHHHTTCHHHHHHSCHHHH-----HHHHHHHHHHHHT
T ss_pred -----------------------------------h----hhhhHHHHHHHHHHhhcchhhh-----hhHHHHHHHHHHh
Confidence 0 122223333333221 11221 1235788889999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh--hhh
Q 040681 398 KEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA--RET 475 (594)
Q Consensus 398 ~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~--~~~ 475 (594)
+.+..++..++.++..++.... .. +. ...+.+.+..++.+.. ..++..|+++|+.|+..... ...
T Consensus 413 d~~~~~r~~~~~~l~~l~~~~~-~~------~~-----~~~l~~~l~~~l~D~~-~~VR~~A~~~L~~l~~~~~~~~~~~ 479 (588)
T d1b3ua_ 413 DAKWRVRLAIIEYMPLLAGQLG-VE------FF-----DEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHA 479 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHC-GG------GC-----CHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcC-hH------hH-----HHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHhCcHHHHH
Confidence 8999999999999988763321 11 11 1236667777777655 89999999999999864432 223
Q ss_pred ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH-HH---------
Q 040681 476 RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL-AL--------- 544 (594)
Q Consensus 476 ~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al-~l--------- 544 (594)
.+++.+.+++.+.++.+|..++.++..+.. ...........+|.|.+++....+ ||..++ .+
T Consensus 480 ~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~-------~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~ 552 (588)
T d1b3ua_ 480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSE-------VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HTHHHHHHTTTCSCHHHHHHHHHHHHHHHH-------HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-------HcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 678999999999999999999999988753 222233444588999999998877 887765 11
Q ss_pred --HHHHHHHHHhhhccccccccchHHHHHHHHHHhccc
Q 040681 545 --EQARVLTALEGADRTVVAQHPELKELVSEALYHLNL 580 (594)
Q Consensus 545 --~~~~~l~~Le~~~~~~~~q~~~~~~l~~~a~~~l~~ 580 (594)
-+..+..+|+...+. .|.+|+....+|+..|++
T Consensus 553 ~~~~~~i~~~l~~L~~D---~d~dVr~~A~~al~~l~~ 587 (588)
T d1b3ua_ 553 STLQSEVKPILEKLTQD---QDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHhc
Confidence 122344445533222 378899999999998875
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3.5e-09 Score=102.35 Aligned_cols=247 Identities=14% Similarity=0.121 Sum_probs=171.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
..+++..|.++++.+|..|+..|..+.. ..+++.|+++|++++ +.++..|+.+|+.+.........+
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~~~~- 87 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCEDNV- 87 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccccch-
Confidence 3457889999999999999999987742 145899999999998 999999999999997643332222
Q ss_pred hcCCHHHHH-HhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHh
Q 040681 238 SELGVPTIV-NVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQIN 316 (594)
Q Consensus 238 ~~g~i~~Lv-~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~ 316 (594)
++.+. .++++.++.++..++.+|.+++...+..... .++.+...+.+. +
T Consensus 88 ----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~~d~----~----------------- 137 (276)
T d1oyza_ 88 ----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDK----S----------------- 137 (276)
T ss_dssp ----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCS----C-----------------
T ss_pred ----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHhcCc----c-----------------
Confidence 23333 3567789999999999999998755322111 234444444332 1
Q ss_pred hhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHh
Q 040681 317 KEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLV 396 (594)
Q Consensus 317 ~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL 396 (594)
..++..++.++... ++ ...++.+..++
T Consensus 138 ------------------------------------------~~vr~~a~~~l~~~--~~---------~~~~~~l~~l~ 164 (276)
T d1oyza_ 138 ------------------------------------------TNVRRATAFAISVI--ND---------KATIPLLINLL 164 (276)
T ss_dssp ------------------------------------------HHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred ------------------------------------------hHHHHHHHHHHhhc--ch---------HHHHHHHHHhc
Confidence 12344556666554 22 34688888999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhc
Q 040681 397 EKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETR 476 (594)
Q Consensus 397 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~ 476 (594)
...+..++..+..++..+. .... ..++.++..+...+ ..++..+..+++.+. ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~---~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~al~~~~------~~~ 219 (276)
T d1oyza_ 165 KDPNGDVRNWAAFAININK---YDNS---------------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK------DKR 219 (276)
T ss_dssp TCSSHHHHHHHHHHHHHHT---CCCH---------------HHHHHHHHHTTCSC-HHHHHHHHHHHHHTT------CGG
T ss_pred ccccchhhhhHHHHHHhhh---cccc---------------ccchhhhhhhhhhh-hhhhhhhccccchhh------hhh
Confidence 8888888887777776543 3332 13344555555444 888888888888775 356
Q ss_pred cHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC-ch-HhHhHH
Q 040681 477 VIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN-DR-TQLHGL 542 (594)
Q Consensus 477 ~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~-~~-vq~~Al 542 (594)
+++.|++.|.+. .|+..|+++|+.+.. .++++.|.++|... +. ++..|+
T Consensus 220 ~~~~L~~~l~d~--~vr~~a~~aL~~ig~---------------~~~~~~L~~~l~~~~d~~vr~~A~ 270 (276)
T d1oyza_ 220 VLSVLCDELKKN--TVYDDIIEAAGELGD---------------KTLLPVLDTMLYKFDDNEIITSAI 270 (276)
T ss_dssp GHHHHHHHHTSS--SCCHHHHHHHHHHCC---------------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred hHHHHHHHhCCh--HHHHHHHHHHHHcCC---------------HHHHHHHHHHHccCCCHHHHHHHH
Confidence 899999999754 488999999999843 35789999988854 44 777765
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.9e-09 Score=112.53 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=115.4
Q ss_pred hCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 040681 386 TKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGS 465 (594)
Q Consensus 386 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~ 465 (594)
...+|.+..++.+++++++..+..++..+.... +...+ .+.+++.+..++.+.+ +.++..++.+++.
T Consensus 362 ~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~-~~~~~-----------~~~ll~~l~~~~~d~~-~~~r~~~~~~l~~ 428 (588)
T d1b3ua_ 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI-GIRQL-----------SQSLLPAIVELAEDAK-WRVRLAIIEYMPL 428 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS-CHHHH-----------HHHHHHHHHHHHTCSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc-chhhh-----------hhHHHHHHHHHHhccc-HHHHHHHHHHHHH
Confidence 346899999999999999998888887765322 11111 1337788888887665 8999999999999
Q ss_pred hhcCChhh--hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-HhHhHH
Q 040681 466 LARTFPAR--ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 466 La~~~~~~--~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-vq~~Al 542 (594)
++...... ...+.+.+..+|.+....|+..|+.+|+.++. ...........++.+.+++.+.+. .|..++
T Consensus 429 l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~-------~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~ 501 (588)
T d1b3ua_ 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE-------KFGKEWAHATIIPKVLAMSGDPNYLHRMTTL 501 (588)
T ss_dssp HHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHHHHTHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH-------HhCcHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 98543221 22567888889999999999999999999965 222222233467888888887776 665555
Q ss_pred ----HHHH--------HHHHHHHh-hhccccccccchHHHHHHHHHHhcccc
Q 040681 543 ----ALEQ--------ARVLTALE-GADRTVVAQHPELKELVSEALYHLNLY 581 (594)
Q Consensus 543 ----~l~~--------~~~l~~Le-~~~~~~~~q~~~~~~l~~~a~~~l~~~ 581 (594)
.+.. ..++..|. ..... .|.+|....+++..+-.+
T Consensus 502 ~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~----v~nVR~~a~~~l~~i~~~ 549 (588)
T d1b3ua_ 502 FCINVLSEVCGQDITTKHMLPTVLRMAGDP----VANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHGGGCS----CHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHH
Confidence 1111 12222222 22222 367888888888777443
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=7.6e-08 Score=92.61 Aligned_cols=232 Identities=16% Similarity=0.101 Sum_probs=160.5
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDD 277 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~ 277 (594)
.....|+++|++++ +.++..|+.+|+.+.. ..+++.|+++|++.++.++..|+.+|..+..... ....
T Consensus 19 ~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~-~~~~ 86 (276)
T d1oyza_ 19 LNDDELFRLLDDHN-SLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CEDN 86 (276)
T ss_dssp SCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THHH
T ss_pred CCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cccc
Confidence 55778999999998 9999999999998864 2358999999999999999999999999865321 1111
Q ss_pred HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHH
Q 040681 278 FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEV 357 (594)
Q Consensus 278 i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~ 357 (594)
.++.|...+-++. +
T Consensus 87 -----~~~~l~~~~l~d~---~---------------------------------------------------------- 100 (276)
T d1oyza_ 87 -----VFNILNNMALNDK---S---------------------------------------------------------- 100 (276)
T ss_dssp -----HHHHHHHHHHHCS---C----------------------------------------------------------
T ss_pred -----hHHHHHHHHhcCC---C----------------------------------------------------------
Confidence 2334444433321 1
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhH
Q 040681 358 KIKLKIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAK 437 (594)
Q Consensus 358 k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~ 437 (594)
..++..++.+|++++...+.. ....++.+...+.+.+..++..++.++..+. ++
T Consensus 101 -~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-----~~--------------- 154 (276)
T d1oyza_ 101 -ACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIN-----DK--------------- 154 (276)
T ss_dssp -HHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------------------
T ss_pred -hhHHHHHHHHHHHHccccchh-----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-----hH---------------
Confidence 134677888999886544321 2235778888888888899988887775432 11
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHH
Q 040681 438 AVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKA 517 (594)
Q Consensus 438 ~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~ 517 (594)
..++.+..++...+ ..++..+..+++...... ....+.++..+.+.+..++..+..++..+..
T Consensus 155 ~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~------------ 217 (276)
T d1oyza_ 155 ATIPLLINLLKDPN-GDVRNWAAFAININKYDN----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------ 217 (276)
T ss_dssp CCHHHHHHHHTCSS-HHHHHHHHHHHHHHTCCC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHhccccc-chhhhhHHHHHHhhhccc----cccchhhhhhhhhhhhhhhhhhccccchhhh------------
Confidence 13456666666544 778888888888776432 3567788889999999999999999998743
Q ss_pred HHHcCChHHHHHhccCCchHhHhHH----HHHHHHHHHHHh
Q 040681 518 IIEFNAVPPLMRLLRGNDRTQLHGL----ALEQARVLTALE 554 (594)
Q Consensus 518 i~~~g~i~~Lv~lL~~~~~vq~~Al----~l~~~~~l~~Le 554 (594)
..+++.|++.+...+ ++..++ .++..+++..|.
T Consensus 218 ---~~~~~~L~~~l~d~~-vr~~a~~aL~~ig~~~~~~~L~ 254 (276)
T d1oyza_ 218 ---KRVLSVLCDELKKNT-VYDDIIEAAGELGDKTLLPVLD 254 (276)
T ss_dssp ---GGGHHHHHHHHTSSS-CCHHHHHHHHHHCCGGGHHHHH
T ss_pred ---hhhHHHHHHHhCChH-HHHHHHHHHHHcCCHHHHHHHH
Confidence 346888999887533 554444 333344555554
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.1e-05 Score=82.17 Aligned_cols=270 Identities=9% Similarity=0.053 Sum_probs=153.5
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCChh-H
Q 040681 157 WVWSYIAAIQM--GQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETA-SSEAQSAAATALYNIANDQE-R 232 (594)
Q Consensus 157 ~i~~lv~~L~~--~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~~~-~ 232 (594)
.+..++..+.+ .+...+..++.++..++...+.....-.-...++.++..+.+++ +.+++..+..+++++..... .
T Consensus 128 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~ 207 (458)
T d1ibrb_ 128 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN 207 (458)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHH
T ss_pred hhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhh
Confidence 34456666654 45566777778887766432222111111234677777776542 37899999999999876322 1
Q ss_pred -HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhH-HHHHHcCChhhHHH-hhhcCCcCCCccCccchhhH
Q 040681 233 -VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQ-DDFARENVIRPLVT-LLSFETFVDDPRANSGKQSI 309 (594)
Q Consensus 233 -~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~-~~i~~~g~i~~Lv~-lL~~~~~~~~~~~v~~~~si 309 (594)
..........+.+..++.+++++++..+..+|..++...+..- ..+ ...+..++. .+.+. +.
T Consensus 208 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l--~~~~~~~~~~~~~~~----~~--------- 272 (458)
T d1ibrb_ 208 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM--GPALFAITIEAMKSD----ID--------- 272 (458)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT--TTTHHHHHHHHHHCS----SH---------
T ss_pred hhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHhccc----cH---------
Confidence 1122223346777888888899999999999999987654210 000 011122211 11111 00
Q ss_pred HHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-------------
Q 040681 310 HTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS------------- 376 (594)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~------------- 376 (594)
.++..++..+..++...
T Consensus 273 --------------------------------------------------~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 302 (458)
T d1ibrb_ 273 --------------------------------------------------EVALQGIEFWSNVCDEEMDLAIEASEAAEQ 302 (458)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 01111222222221000
Q ss_pred -------hhhHHHHHhhCcHHHHHHHhhh-------CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHH
Q 040681 377 -------VANSRRISETKGLLCLAKLVEK-------EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQ 442 (594)
Q Consensus 377 -------~~~~~~i~e~g~l~~L~~LL~~-------~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~ 442 (594)
............++.+...+.. ++..++..+..++..++.... +. + .+.+++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-~~-~-----------~~~l~~~ 369 (458)
T d1ibrb_ 303 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD-I-----------VPHVLPF 369 (458)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT-H-----------HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc-Hh-h-----------hhHHHHH
Confidence 0000000111234455555432 123577788888877764332 11 1 2336667
Q ss_pred HHHHHhcCCChhhHHHHHHHHHHhhcCC-hh-h---hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 443 LLRVINDLDSPTLQIPAIKSIGSLARTF-PA-R---ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 443 Ll~lL~s~~~~~v~~~a~~aL~~La~~~-~~-~---~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
+...+.+.+ +.+++.|+.+|+.++... .. . -..+++.|+..+.+.++.||..|+++|++++.
T Consensus 370 i~~~l~s~~-~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 370 IKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp HHHHTTCSS-HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 777777655 999999999999998532 11 1 12678999999999999999999999999864
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.6e-06 Score=99.03 Aligned_cols=270 Identities=14% Similarity=0.142 Sum_probs=168.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-hh-HHH
Q 040681 157 WVWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND-QE-RVR 234 (594)
Q Consensus 157 ~i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~-~~-~~~ 234 (594)
.|-.++..+.+.|++.|..|+..|.+....+......-.....++.|+++|.+.+ ++||..|+.+|+.|+.. ++ ...
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~~ 82 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQVE 82 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhHH
Confidence 3567888999999999999998887754331111000011235788999999988 99999999999999863 22 222
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHH-hHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDAL-AQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIV 313 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~ 313 (594)
. .++.|+..+.+++..++..++.+|..+...-+. ....-......+.++..+.....
T Consensus 83 ~-----l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~----------------- 140 (1207)
T d1u6gc_ 83 T-----IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIA----------------- 140 (1207)
T ss_dssp H-----HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHS-----------------
T ss_pred H-----HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhc-----------------
Confidence 2 367788888888888888888888776542110 00000000012222222221100
Q ss_pred HHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh-hHHHHHhhCcHHHH
Q 040681 314 QINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA-NSRRISETKGLLCL 392 (594)
Q Consensus 314 l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~-~~~~i~e~g~l~~L 392 (594)
..+++ .++..+..+|..+...... ... .....++.|
T Consensus 141 -------------------------------------~~~~~----~v~~~al~~l~~l~~~~g~~l~~--~~~~il~~l 177 (1207)
T d1u6gc_ 141 -------------------------------------KQEDV----SVQLEALDIMADMLSRQGGLLVN--FHPSILTCL 177 (1207)
T ss_dssp -------------------------------------CCSCH----HHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHH
T ss_pred -------------------------------------CCCCH----HHHHHHHHHHHHHHHHhhHhhHH--HHHHHHHHH
Confidence 00111 2244455555554321110 000 012357778
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChh
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPA 472 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~ 472 (594)
+..+.+.+..++..|+.+|..+..... . . .+ ..+++.++..+..+.+...+..++.+++.+++..+.
T Consensus 178 ~~~l~~~~~~vR~~A~~~l~~l~~~~~--~---~-~~-------~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~ 244 (1207)
T d1u6gc_ 178 LPQLTSPRLAVRKRTIIALGHLVMSCG--N---I-VF-------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244 (1207)
T ss_dssp GGGGGCSSHHHHHHHHHHHHHHTTTC----------C-------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHCC--H---H-HH-------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch
Confidence 888888889999999999988762221 1 1 11 226778887777676677788889999999875432
Q ss_pred h----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 473 R----ETRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 473 ~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
. -..+++.+++.+.+.+.+++..+..++..++.
T Consensus 245 ~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~ 281 (1207)
T d1u6gc_ 245 RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 281 (1207)
T ss_dssp GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 2 12678999999999999999999999888864
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5.9e-05 Score=84.72 Aligned_cols=356 Identities=15% Similarity=0.132 Sum_probs=189.1
Q ss_pred CcchHHHHHHH-HHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCC-
Q 040681 152 DPMLSWVWSYI-AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAND- 229 (594)
Q Consensus 152 ~~i~~~i~~lv-~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~- 229 (594)
+.+...+...+ ..+++.+...|..|+.+|+.++.+..+.....+ ...+|.|+..|++++ +.++..++|+|+.++..
T Consensus 390 ~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~ 467 (888)
T d1qbkb_ 390 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWV 467 (888)
T ss_dssp SSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Confidence 34444454544 356788888999999999998865433221111 235788888998888 99999999999998851
Q ss_pred -hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-HHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchh
Q 040681 230 -QERVRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHD-ALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQ 307 (594)
Q Consensus 230 -~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~ 307 (594)
+...... -...++.++..+.++++.|++.|+++|.+++... +.....+ ...++.|+..+..... ....+ ...
T Consensus 468 ~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~--~~~~~-~~~ 541 (888)
T d1qbkb_ 468 VSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQH--KNLLI-LYD 541 (888)
T ss_dssp HSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCH--HHHHH-HHH
T ss_pred hhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhH--HHHHH-HHH
Confidence 1112222 2457888999999999999999999999998631 1100000 0122333333322210 00000 000
Q ss_pred hHHHHHH----------------Hhhhhc-ccccccCCCcccccchh--------------------------cc-ccCC
Q 040681 308 SIHTIVQ----------------INKEME-KNSFVGSKNYRPYLYSE--------------------------YC-SSRS 343 (594)
Q Consensus 308 si~~l~l----------------~~~~~~-~~~~~~~g~~~~L~~~~--------------------------~~-~s~~ 343 (594)
++..++. ..+... .....+.....+++.++ .. +...
T Consensus 542 al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 621 (888)
T d1qbkb_ 542 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 621 (888)
T ss_dssp HHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 0000000 000000 00000000000000000 00 0000
Q ss_pred -CccccccccCChHHHHHHHHHHHHHHHHhccC-ChhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCC
Q 040681 344 -GQNRKDRENEKPEVKIKLKIACAEALWMLARG-SVANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESN 421 (594)
Q Consensus 344 -~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~-~~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~ 421 (594)
.........+.+. ......+..++..+..+ .......+.....++.+...+++.+.+++..|..++..|+......
T Consensus 622 ~~~~~~~~~~~~~~--~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~ 699 (888)
T d1qbkb_ 622 MLNNAQPDQYEAPD--KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699 (888)
T ss_dssp HHHHHCTTTSCCCC--THHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHhcccccccchh--HHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHH
Confidence 0000000011111 01222233334433221 1222333444556788888888889999999988888776332211
Q ss_pred HHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhh-h---hccHHHHHHhccCC--CHHHHHH
Q 040681 422 ADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPAR-E---TRVIGPLVAHLSHR--NQEVATE 495 (594)
Q Consensus 422 ~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~-~---~~~i~~Lv~lL~~~--~~~v~~~ 495 (594)
+. |....+++.++..|++.. ..++..|++++|.++...... . ..+++.|+++|.+. ...+...
T Consensus 700 -------~~---~~l~~~~~~l~~~L~~~~-~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n 768 (888)
T d1qbkb_ 700 -------VK---PCIADFMPILGTNLNPEF-ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLEN 768 (888)
T ss_dssp -------TG---GGHHHHHHHHHHTCCGGG-HHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHH
T ss_pred -------HH---HHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHH
Confidence 11 234457777777776544 789999999999999754322 1 25688888888653 4568999
Q ss_pred HHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccC
Q 040681 496 AAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRG 533 (594)
Q Consensus 496 Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~ 533 (594)
+|.+|+.++. . +++.....+ ...+++++..|..
T Consensus 769 ~~~~lgrl~~-~---~p~~~~~~l-~~~~~~~~~~l~~ 801 (888)
T d1qbkb_ 769 TAITIGRLGY-V---CPQEVAPML-QQFIRPWCTSLRN 801 (888)
T ss_dssp HHHHHHHHHH-H---CHHHHGGGG-GGTHHHHHHHHTT
T ss_pred HHHHHHHHHH-H---CHHHHHhhH-HHHHHHHHHHhcc
Confidence 9999999975 1 223221111 2356777777664
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.00051 Score=76.82 Aligned_cols=134 Identities=21% Similarity=0.212 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHhccCChh-hHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHH
Q 040681 360 KLKIACAEALWMLARGSVA-NSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKA 438 (594)
Q Consensus 360 ~l~~~a~~aL~~L~~~~~~-~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~ 438 (594)
.++..+..++..++..... ....+ ...++.+..-|.++..+++.+|+|++..|+.... . .|. |....
T Consensus 680 ~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~--~-----~~~---py~~~ 747 (888)
T d1qbkb_ 680 EVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMG--I-----EMQ---PYIPM 747 (888)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG--G-----GGG---GGSHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH--H-----Hhh---hhHHH
Confidence 3466677777766543222 11211 1256777777777778899999999999873321 1 122 34567
Q ss_pred HHHHHHHHHhcCCC-hhhHHHHHHHHHHhhcCChhhh----hccHHHHHHhccC-CCHHHHHHHHHHHHHhcC
Q 040681 439 VVDQLLRVINDLDS-PTLQIPAIKSIGSLARTFPARE----TRVIGPLVAHLSH-RNQEVATEAAIALQKFAS 505 (594)
Q Consensus 439 ~v~~Ll~lL~s~~~-~~v~~~a~~aL~~La~~~~~~~----~~~i~~Lv~lL~~-~~~~v~~~Aa~aL~nl~~ 505 (594)
+++.|++++++.+. ..+++.++.+||.|+...+..- ..++++++..|.. ++.+-+..|...++.+..
T Consensus 748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~ 820 (888)
T d1qbkb_ 748 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS 820 (888)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 99999999986543 5688999999999997665432 2578888888854 344557788889999877
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.83 E-value=1e-05 Score=66.71 Aligned_cols=86 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIV 237 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv 237 (594)
+..++..|.++++.+|..|+++|+.+... +.++.|+++|++.+ +.++..|+++|+.+..
T Consensus 24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~-~~VR~~a~~aL~~i~~--------- 82 (111)
T d1te4a_ 24 FEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG--------- 82 (111)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHHHHhhhccch-hHHHHHHHHHHHHhCc---------
Confidence 45678889999999999999999876422 45899999999998 9999999999999854
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 040681 238 SELGVPTIVNVLSDSIMKVQIQVASLVA 265 (594)
Q Consensus 238 ~~g~i~~Lv~lL~~~~~~v~~~aa~aL~ 265 (594)
.+.++.|..+++++++.++..|..+|.
T Consensus 83 -~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 -ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 235888899999999999999988763
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=0.00037 Score=71.06 Aligned_cols=256 Identities=15% Similarity=0.128 Sum_probs=160.7
Q ss_pred hcCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCChHHHHHhhccC----------------CCHHHHHHHHHHHHHhh
Q 040681 166 QMGQLSDRIEAAIELASLAKDNDRNKKIIVE--EGGVPPLLKLLKET----------------ASSEAQSAAATALYNIA 227 (594)
Q Consensus 166 ~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~--~g~I~~Lv~LL~~~----------------~~~~v~e~A~~aL~~La 227 (594)
..++.+...-|+.+|..+.+. +++|..+.. ...+++|+..|+.. ....++.+++-+++.|+
T Consensus 175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 667888888899999999877 899998864 45688888888541 01467889999999999
Q ss_pred CChhHHHHHHhcC--CHHHHHHhhcCC-CHHHHHHHHHHHHHHhhcCH-----HhHHHHHHcCChhhHHHhhhcCCcCCC
Q 040681 228 NDQERVRVIVSEL--GVPTIVNVLSDS-IMKVQIQVASLVARMAEHDA-----LAQDDFARENVIRPLVTLLSFETFVDD 299 (594)
Q Consensus 228 ~~~~~~~~iv~~g--~i~~Lv~lL~~~-~~~v~~~aa~aL~~La~~~~-----~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 299 (594)
.+++....+.+.. .++.|+.+++.. ..++..-+..+|.|++.... .+...+..++++ +++..|...
T Consensus 254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r----- 327 (477)
T d1ho8a_ 254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSER----- 327 (477)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSS-----
T ss_pred cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcC-----
Confidence 9998888888764 499999999755 78899999999999986421 123334444444 455555433
Q ss_pred ccCccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHH---HHHHHHHHhccCC
Q 040681 300 PRANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKI---ACAEALWMLARGS 376 (594)
Q Consensus 300 ~~~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~---~a~~aL~~L~~~~ 376 (594)
.+.||+....+.. .--.-+..+++ -
T Consensus 328 ---------------------------------------------------~~~Dedl~edl~~L~~~L~~~~k~lTs-f 355 (477)
T d1ho8a_ 328 ---------------------------------------------------KYSDEELRQDISNLKEILENEYQELTS-F 355 (477)
T ss_dssp ---------------------------------------------------CCSSHHHHHHHHHHHHHHHHHHHTCCH-H
T ss_pred ---------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhcCc-H
Confidence 3345444333221 01111111211 1
Q ss_pred hhhHHHHHhhCcHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhc-------
Q 040681 377 VANSRRISETKGLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVIND------- 449 (594)
Q Consensus 377 ~~~~~~i~e~g~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s------- 449 (594)
++.+ .-++.|-+.- .-....+.--++|+.. + +.+ . -.++..|.++|++
T Consensus 356 d~Y~-~Ev~Sg~L~W--SP~H~se~FW~EN~~k-f-------~e~-----------~---~~llk~L~~lL~~~~~~~~~ 410 (477)
T d1ho8a_ 356 DEYV-AELDSKLLCW--SPPHVDNGFWSDNIDE-F-------KKD-----------N---YKIFRQLIELLQAKVRNGDV 410 (477)
T ss_dssp HHHH-HHHHHTCCCC--CGGGGCHHHHHHHSGG-G-------SSG-----------G---GHHHHHHHHHHHHHHHTTCC
T ss_pred HHHH-HHHhcCCCCC--CCCcCChhHHHHHHHh-h-------ccc-----------c---hHHHHHHHHHHhhccccccc
Confidence 1111 1111221100 0000001122333211 1 111 1 1277888888863
Q ss_pred --CCChhhHHHHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 450 --LDSPTLQIPAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 450 --~~~~~v~~~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
++++.+..-||-=||.+++..|... .|+=..+.++|.+.+++|+.+|..++.++..
T Consensus 411 ~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 411 NAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2347778889999999998776432 2666788899999999999999999998854
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.71 E-value=4.7e-05 Score=62.58 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=72.7
Q ss_pred cHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 040681 388 GLLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLA 467 (594)
Q Consensus 388 ~l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La 467 (594)
+++.|+.+|.++++.++..|+++|.++. + ...++.|..+|++.+ +.|+..|+.+|+.+.
T Consensus 23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----~---------------~~~~~~L~~~l~d~~-~~VR~~a~~aL~~i~ 81 (111)
T d1te4a_ 23 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----D---------------ERAVEPLIKLLEDDS-GFVRSGAARSLEQIG 81 (111)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC-----S---------------HHHHHHHHHHHHHCC-THHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcc-----h---------------hhhHHHHHhhhccch-hHHHHHHHHHHHHhC
Confidence 5788999999999999999999996442 1 125677888888765 999999999999985
Q ss_pred cCChhhhhccHHHHHHhccCCCHHHHHHHHHHHH
Q 040681 468 RTFPARETRVIGPLVAHLSHRNQEVATEAAIALQ 501 (594)
Q Consensus 468 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~ 501 (594)
..+.++.|..++++.++.|+..|+.+|.
T Consensus 82 ------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 ------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp ------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3467899999999999999999998874
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00073 Score=77.69 Aligned_cols=345 Identities=11% Similarity=0.077 Sum_probs=176.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDR-NKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVI 236 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~-~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~i 236 (594)
+..+...+...+...|..++.+|..+...... ...... ...++.|..++.+.+ ..++..+..+|..+.........-
T Consensus 649 ~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~-~~~l~~l~~ll~~~d-~~v~~~~l~~l~~l~~~~~~~~~~ 726 (1207)
T d1u6gc_ 649 VPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI-DAVLDELPPLISESD-MHVSQMAISFLTTLAKVYPSSLSK 726 (1207)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHH-HHHHTTCGGGSCTTC-HHHHHHHHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHH-hhHHHhhcccccccc-HHHHHHHHHHHHHHHhhcchhhhh
Confidence 44456677888888999999999887654221 111111 122333445666667 889999999999998743332223
Q ss_pred HhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH--
Q 040681 237 VSELGVPTIVNVLSDS--IMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI-- 312 (594)
Q Consensus 237 v~~g~i~~Lv~lL~~~--~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l-- 312 (594)
+....++.++.++.++ ...........+..+..... .......++..|......... .......++.+
T Consensus 727 ~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~ 798 (1207)
T d1u6gc_ 727 ISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT-------NNLGYMDLLRMLTGPVYSQST-ALTHKQSYYSIAK 798 (1207)
T ss_dssp TTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC-------TTCSHHHHHHHHSTTTTTC-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccc-------cccchHHHHHHHHHhhccccc-hhhHHHHHHHHHH
Confidence 3456789999998876 23333333333333332211 112234445544332111000 01111122221
Q ss_pred HHHhhhhcccccccCCCccccc-chhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYL-YSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGLL 390 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~-~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l~ 390 (594)
+.+...... . ....+.+ .+. .+..++......+..+..+|+.+.... .. .......
T Consensus 799 ~i~~l~~~~----~-~~~~~~l~~~l------------~~~~~~~~~~~~~~~al~~Lge~~~~~~~~-----~~~~l~~ 856 (1207)
T d1u6gc_ 799 CVAALTRAC----P-KEGPAVVGQFI------------QDVKNSRSTDSIRLLALLSLGEVGHHIDLS-----GQLELKS 856 (1207)
T ss_dssp HHHHHHHHS----C-CCSHHHHTTTT------------TTTTTTTCCHHHHHHHHHHHHHHHHHSCCC-----SCTHHHH
T ss_pred HHHHHHHhh----h-hhHHHHHHHHH------------HHHhcccchHHHHHHHHHHHHHHHHhcccc-----chHHHHH
Confidence 111110000 0 0000000 000 000000000122334455555543110 00 0011346
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhc------------CCHHHHHH---h---hhcCCh--hhHHHHHHHHHHHhc-
Q 040681 391 CLAKLVEKEQGELQFNCLMTIMEITAAAE------------SNADLRRA---A---FKTNSP--AAKAVVDQLLRVIND- 449 (594)
Q Consensus 391 ~L~~LL~~~~~~v~~~A~~aL~nL~~~~~------------~~~~~r~~---~---~~~~~~--~~~~~v~~Ll~lL~s- 449 (594)
.++..+.+++++++..|+.+|.+++...- ..+..+.. + +....+ .....++.++..|..
T Consensus 857 ~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~ 936 (1207)
T d1u6gc_ 857 VILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKH 936 (1207)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 66777788888888888888877753211 00000000 0 010110 112234444444321
Q ss_pred --CCChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHH
Q 040681 450 --LDSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPL 527 (594)
Q Consensus 450 --~~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~L 527 (594)
.....++..++.+||.|+...+ ...+|.|...|.++++.++..++.++..+.. +.+ +.....+. ..++++
T Consensus 937 ~~~~~~~vr~~~a~~lg~L~~~~~---~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~-~~~---~~~~~~l~-~li~~l 1008 (1207)
T d1u6gc_ 937 CECAEEGTRNVVAECLGKLTLIDP---ETLLPRLKGYLISGSSYARSSVVTAVKFTIS-DHP---QPIDPLLK-NCIGDF 1008 (1207)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHSSG---GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCC-SSC---CTHHHHHH-HHSTTT
T ss_pred hCCCcHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-hcc---hhhHHHHH-HHHHHH
Confidence 1237789999999999986443 3679999999999999999999999988876 331 22222222 257788
Q ss_pred HHhccCCch-HhHhHH
Q 040681 528 MRLLRGNDR-TQLHGL 542 (594)
Q Consensus 528 v~lL~~~~~-vq~~Al 542 (594)
+..|..++. ++..|+
T Consensus 1009 l~~l~d~~~~vR~~al 1024 (1207)
T d1u6gc_ 1009 LKTLEDPDLNVRRVAL 1024 (1207)
T ss_dssp HHHHSSSSTHHHHHHH
T ss_pred HHHhCCCCHHHHHHHH
Confidence 888888777 888877
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0036 Score=62.62 Aligned_cols=273 Identities=11% Similarity=0.099 Sum_probs=145.0
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhhccCchhHH-HHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHH
Q 040681 158 VWSYIAAIQM--GQLSDRIEAAIELASLAKDNDRNKK-IIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERV 233 (594)
Q Consensus 158 i~~lv~~L~~--~~~~~~~~Aa~~L~~la~~~~~~~~-~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~ 233 (594)
+..++..+.+ .+.+++..|+.++..+......... ........+.+..++.+++ ++++..+..+|..++. .++.-
T Consensus 173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~ 251 (458)
T d1ibrb_ 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYM 251 (458)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC-HHHHHHHHHHHHHHHHHhHHHH
Confidence 4445556654 3577899999999888754322211 1112234556667777777 9999999999999875 33321
Q ss_pred HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH-
Q 040681 234 RVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI- 312 (594)
Q Consensus 234 ~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l- 312 (594)
...+.....+.+...+++.+.+++..+...+..++.... ...+....... ................+..+
T Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~ 322 (458)
T d1ibrb_ 252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM--DLAIEASEAAE-------QGRPPEHTSKFYAKGALQYLV 322 (458)
T ss_dssp TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH--HHHHHHCCTTC-------SSSCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHH-------hhhHHHHHHHHHHHHHHHHHh
Confidence 111122223445556677788999999999998876321 11111111100 00000000000000000000
Q ss_pred --HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHhhCcH
Q 040681 313 --VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISETKGL 389 (594)
Q Consensus 313 --~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e~g~l 389 (594)
+.......... .+.++. ..+..+..++..++... ++.. ...+
T Consensus 323 ~~l~~~~~~~~~~--------------------------~~~~~~----~~~~~a~~~l~~l~~~~~~~~~-----~~l~ 367 (458)
T d1ibrb_ 323 PILTQTLTKQDEN--------------------------DDDDDW----NPCKAAGVCLMLLATCCEDDIV-----PHVL 367 (458)
T ss_dssp HHHHHHTTCCCSS--------------------------CCTTCC----SHHHHHHHHHHHHHHHTTTTHH-----HHHH
T ss_pred hhHHhhhhcchhh--------------------------hccccc----cHHHHHHHHHHHHHHhccHhhh-----hHHH
Confidence 00000000000 000000 12445566666654311 2211 1246
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcC
Q 040681 390 LCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLART 469 (594)
Q Consensus 390 ~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~ 469 (594)
+.+...+.+++..++..|+.+|..++...... .+. +....+++.++..+++.. +.||..|+.+|++++..
T Consensus 368 ~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~------~~~---~~l~~i~~~l~~~l~d~~-~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 368 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS------QLK---PLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT------TTC---TTTTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHh------HHH---HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH
Confidence 67777788888899999999997765221111 111 123448899999998655 89999999999999865
Q ss_pred Chhhh--hccHHHHHHhc
Q 040681 470 FPARE--TRVIGPLVAHL 485 (594)
Q Consensus 470 ~~~~~--~~~i~~Lv~lL 485 (594)
.+... ...+++++..|
T Consensus 438 ~~~~~~~~~~l~~ll~~l 455 (458)
T d1ibrb_ 438 LPEAAINDVYLAPLLQCL 455 (458)
T ss_dssp GGGGCCSTTTHHHHHHHH
T ss_pred hhcccchhhHHHHHHHHH
Confidence 43222 24577777655
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.32 E-value=0.0048 Score=62.61 Aligned_cols=294 Identities=14% Similarity=0.142 Sum_probs=166.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhh-ccCCCHHHHHHHHHHHHHhhCChhHHHHHHh--cC
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLL-KETASSEAQSAAATALYNIANDQERVRVIVS--EL 240 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL-~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~--~g 240 (594)
.+..++.-....+...+..++..........-..--...++..| ..++ .+.+.-++..|..+...++.|..+.+ ..
T Consensus 130 ~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr~~~~R~~fw~~~~~ 208 (477)
T d1ho8a_ 130 SLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAVIPEYRDVIWLHEKK 208 (477)
T ss_dssp CSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHTSHHHHHHHHTTHHH
T ss_pred hccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhcCccHHHHHHHcccc
Confidence 34445544545555555556554333322211111122333333 4455 88888899999999999999998864 44
Q ss_pred CHHHHHHhhcCC-----------------CHHHHHHHHHHHHHHhhcCHHhHHHHHHcC--ChhhHHHhhhcCCcCCCcc
Q 040681 241 GVPTIVNVLSDS-----------------IMKVQIQVASLVARMAEHDALAQDDFAREN--VIRPLVTLLSFETFVDDPR 301 (594)
Q Consensus 241 ~i~~Lv~lL~~~-----------------~~~v~~~aa~aL~~La~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~ 301 (594)
.+++|+++|+.. ...++-.+.-+++-|+- +++....+.+.. .|+.|+.+++...
T Consensus 209 ~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~------ 281 (477)
T d1ho8a_ 209 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITI------ 281 (477)
T ss_dssp HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhh------
Confidence 578888887531 24567788888998886 556666665543 3777777765431
Q ss_pred CccchhhHHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChh---
Q 040681 302 ANSGKQSIHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVA--- 378 (594)
Q Consensus 302 ~v~~~~si~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~--- 378 (594)
|.++.+.+..+|.|+......
T Consensus 282 --------------------------------------------------------KEKvvRv~l~~l~Nll~~~~~~~~ 305 (477)
T d1ho8a_ 282 --------------------------------------------------------KEKVSRLCISIILQCCSTRVKQHK 305 (477)
T ss_dssp --------------------------------------------------------SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHhhhhhhhhh
Confidence 134566778889998643211
Q ss_pred --hHHHHHhhCcHHHHHHHhhh--CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCC-Ch
Q 040681 379 --NSRRISETKGLLCLAKLVEK--EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLD-SP 453 (594)
Q Consensus 379 --~~~~i~e~g~l~~L~~LL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~-~~ 453 (594)
....++..++++.+-.|... .|+++.. ....|.++- +.+ + + .-+ -.+....=+.++. .+
T Consensus 306 ~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~e-dl~~L~~~L---~~~--~-k----~lT-----sfd~Y~~Ev~Sg~L~W 369 (477)
T d1ho8a_ 306 KVIKQLLLLGNALPTVQSLSERKYSDEELRQ-DISNLKEIL---ENE--Y-Q----ELT-----SFDEYVAELDSKLLCW 369 (477)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSSCCSSHHHHH-HHHHHHHHH---HHH--H-H----TCC-----HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHcchhHHHHHHhcCCCCCHHHHH-HHHHHHHHH---HHH--H-H----hcC-----cHHHHHHHHhcCCCCC
Confidence 23345566666554444332 3566543 333333222 111 1 1 001 1122222222211 00
Q ss_pred h-hHHHHHHHHHHhhcCChhhhhccHHHHHHhcc----------CCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcC
Q 040681 454 T-LQIPAIKSIGSLARTFPARETRVIGPLVAHLS----------HRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFN 522 (594)
Q Consensus 454 ~-v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g 522 (594)
. +...-.-=--| +..+......++..|+++|. +.++.+..=||.=|+.|+. .+++.+..+-+-|
T Consensus 370 SP~H~se~FW~EN-~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr----~~P~gr~il~~lg 444 (477)
T d1ho8a_ 370 SPPHVDNGFWSDN-IDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVE----LLPESIDVLDKTG 444 (477)
T ss_dssp CGGGGCHHHHHHH-SGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHH----HCTTHHHHHHHHS
T ss_pred CCCcCChhHHHHH-HHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHH----HCcchhHHHHHcC
Confidence 0 00000000011 11233333467899999995 3456677778889999987 2466666666778
Q ss_pred ChHHHHHhccCCch-HhHhHH
Q 040681 523 AVPPLMRLLRGNDR-TQLHGL 542 (594)
Q Consensus 523 ~i~~Lv~lL~~~~~-vq~~Al 542 (594)
+=..+++|+.+.|+ |+.+||
T Consensus 445 ~K~~vM~Lm~h~d~~Vr~eAL 465 (477)
T d1ho8a_ 445 GKADIMELLNHSDSRVKYEAL 465 (477)
T ss_dssp HHHHHHHHTSCSSHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHH
Confidence 87889999998888 999998
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.011 Score=64.31 Aligned_cols=285 Identities=10% Similarity=0.073 Sum_probs=150.7
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHhhccCchhHHHHHh--cCChHHHHHhhccCC-CHHHHHHHHHHHHHhhCC-h
Q 040681 157 WVWSYIAAIQMG--QLSDRIEAAIELASLAKDNDRNKKIIVE--EGGVPPLLKLLKETA-SSEAQSAAATALYNIAND-Q 230 (594)
Q Consensus 157 ~i~~lv~~L~~~--~~~~~~~Aa~~L~~la~~~~~~~~~i~~--~g~I~~Lv~LL~~~~-~~~v~e~A~~aL~~La~~-~ 230 (594)
.+..++..+.++ +...+..++.+|..++.+-.. ..+.. ...++.++..+.+.+ +.+++..+..++.++... .
T Consensus 129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~ 206 (876)
T d1qgra_ 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence 455666777554 356777788888888753211 11111 234677888776542 378999999999887642 1
Q ss_pred hH-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhh-
Q 040681 231 ER-VRVIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQS- 308 (594)
Q Consensus 231 ~~-~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~s- 308 (594)
.. .......-.++.+...+.+++++++..+..+|..++...+..-...........+...+.... .. + ....
T Consensus 207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~--~-~~~~~ 280 (876)
T d1qgra_ 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI---DE--V-ALQGI 280 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS---HH--H-HHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc---HH--H-HHHHH
Confidence 11 011111123567777888889999999999999998765432111111111222222222221 00 0 0000
Q ss_pred --HHHHHHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC--hhhHHHHH
Q 040681 309 --IHTIVQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS--VANSRRIS 384 (594)
Q Consensus 309 --i~~l~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~--~~~~~~i~ 384 (594)
+..++... ..+............... ...-....
T Consensus 281 ~~~~~i~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (876)
T d1qgra_ 281 EFWSNVCDEE------------------------------------------MDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (876)
T ss_dssp HHHHHHHHHH------------------------------------------HHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred HHHHHHHHHH------------------------------------------HHHHHHhhHHHHhhhhHHHHHHHHHHHH
Confidence 00000000 000000001111100000 00000111
Q ss_pred hhCcHHHHHHHhhhC-------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHH
Q 040681 385 ETKGLLCLAKLVEKE-------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQI 457 (594)
Q Consensus 385 e~g~l~~L~~LL~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~ 457 (594)
....++.+...+... +..++..|..++..++..... ...+.+++.+...+.+.+ +..++
T Consensus 319 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-------------~~~~~~~~~i~~~l~~~~-~~~r~ 384 (876)
T d1qgra_ 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------------DIVPHVLPFIKEHIKNPD-WRYRD 384 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHTTCSS-HHHHH
T ss_pred HHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh-------------hhhhhhHHHHHHhhccch-HHHHH
Confidence 122345555555322 124677777888776633211 012335555666665544 88999
Q ss_pred HHHHHHHHhhcCChhhh-----hccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 458 PAIKSIGSLARTFPARE-----TRVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 458 ~a~~aL~~La~~~~~~~-----~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
.++.+++.++....... ..+++.++..+.+.++.|+..|+++++.++.
T Consensus 385 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T d1qgra_ 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence 99999999885433221 2567888889999999999999999999864
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.044 Score=58.98 Aligned_cols=310 Identities=12% Similarity=0.050 Sum_probs=168.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhccC-chh-HHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhH-HHHHH
Q 040681 161 YIAAIQMGQLSDRIEAAIELASLAKDN-DRN-KKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQER-VRVIV 237 (594)
Q Consensus 161 lv~~L~~~~~~~~~~Aa~~L~~la~~~-~~~-~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~-~~~iv 237 (594)
++..+.+.+...|..++.++..++... +.+ |- ..++.|+..+.++++..++..+..+|..++..-.. -..+.
T Consensus 100 ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~ 174 (861)
T d2bpta1 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV 174 (861)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455677888999999999998887531 111 11 23567777777766477888899999988742111 11111
Q ss_pred h--cCCHHHHHHhhc--CCCHHHHHHHHHHHHHHhhcCHHhHHH-HHHcCChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 238 S--ELGVPTIVNVLS--DSIMKVQIQVASLVARMAEHDALAQDD-FARENVIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 238 ~--~g~i~~Lv~lL~--~~~~~v~~~aa~aL~~La~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
. ...++.+++.+. ..+..++..+..++.++...-+..... ......++.|...+..+
T Consensus 175 ~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 236 (861)
T d2bpta1 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE------------------ 236 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS------------------
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC------------------
Confidence 0 112333444443 337889999999999987653321110 00111233344443332
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHH
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCL 392 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L 392 (594)
++ .++..+..++..++...++.-......-....+
T Consensus 237 -----------------------------------------~~----~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~ 271 (861)
T d2bpta1 237 -----------------------------------------DI----EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALT 271 (861)
T ss_dssp -----------------------------------------CH----HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHH
T ss_pred -----------------------------------------CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 235556677776653222211111111112223
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHHHhcCCHH-HHHH--hhhcCC----hhhHHHHHHHHHHHhcCC------ChhhHHHH
Q 040681 393 AKLVEKEQGELQFNCLMTIMEITAAAESNAD-LRRA--AFKTNS----PAAKAVVDQLLRVINDLD------SPTLQIPA 459 (594)
Q Consensus 393 ~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~-~r~~--~~~~~~----~~~~~~v~~Ll~lL~s~~------~~~v~~~a 459 (594)
....++.+++++..+...+..++........ .... ...... +....+++.+...+...+ +...+..+
T Consensus 272 ~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 351 (861)
T d2bpta1 272 IATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA 351 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3444566788888888888766532211000 0000 000000 112335556666665332 24577778
Q ss_pred HHHHHHhhcCChhhhh-ccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCCch-H
Q 040681 460 IKSIGSLARTFPARET-RVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGNDR-T 537 (594)
Q Consensus 460 ~~aL~~La~~~~~~~~-~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~~~-v 537 (594)
..++..++...+..-. ...+.+...+.+.++..+..|+.++..++.... .......++ ..++.+++.+...++ +
T Consensus 352 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~---~~~~~~~l~-~~l~~l~~~l~d~~~~v 427 (861)
T d2bpta1 352 GACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD---KVQRTYYVH-QALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC---HHHHHHHHH-HHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcc---hhhHHHHHH-HHHHHHHHHhcCcchhh
Confidence 8888888754332111 233444556688899999999999999875221 233333333 367889999987777 8
Q ss_pred hHhHH
Q 040681 538 QLHGL 542 (594)
Q Consensus 538 q~~Al 542 (594)
+..++
T Consensus 428 r~~a~ 432 (861)
T d2bpta1 428 KETTA 432 (861)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 77666
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.0069 Score=65.69 Aligned_cols=292 Identities=15% Similarity=0.177 Sum_probs=154.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHH
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVP 243 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~ 243 (594)
.+.+.+...+..|...+..++.........-.-...++.++.++.+++ +.++..++++++.++..-. ..+.....++
T Consensus 377 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~ 453 (861)
T d2bpta1 377 NITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVA--ESIDPQQHLP 453 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHG--GGSCTTTTHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhc--hhhhhHHhhh
Confidence 446677788888889999888754433222222346888999999888 9999999999999875211 1111123344
Q ss_pred HHHHhh---cCCCHHHHHHHHHHHHHHhhcCHH-hHHHHHH--cCChhhHHHhhhcCCcCCCccCccchhhHHHHHHHhh
Q 040681 244 TIVNVL---SDSIMKVQIQVASLVARMAEHDAL-AQDDFAR--ENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQINK 317 (594)
Q Consensus 244 ~Lv~lL---~~~~~~v~~~aa~aL~~La~~~~~-~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l~~~ 317 (594)
.++..+ ...++.++..+++++..++..-.. ....+.. ...+..|+.......
T Consensus 454 ~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------- 511 (861)
T d2bpta1 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID---------------------- 511 (861)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC----------------------
T ss_pred hhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhh----------------------
Confidence 444433 234678888888888888653100 0000000 001112222221110
Q ss_pred hhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHHHh--hCcHHHHHH
Q 040681 318 EMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRISE--TKGLLCLAK 394 (594)
Q Consensus 318 ~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i~e--~g~l~~L~~ 394 (594)
.+. .++..+..++..+.... ......+.. ......+..
T Consensus 512 -----------------------------------~~~----~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~ 552 (861)
T d2bpta1 512 -----------------------------------NEF----NARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp -----------------------------------CGG----GHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------hhH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 000 12333444555443211 221111111 111222333
Q ss_pred HhhhCC-----------HHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 395 LVEKEQ-----------GELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 395 LL~~~~-----------~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
.+.... ..++..+..++..+...... .-.+....+++.++..+...++..+++.++.++
T Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~----------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l 622 (861)
T d2bpta1 553 TMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS----------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622 (861)
T ss_dssp HTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG----------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchh----------hHHHHHHHHHHHHhhhcccCCchhHHHHHHHHH
Confidence 222111 12333334444443311110 011234557788888888777788999999999
Q ss_pred HHhhcCChhh----hhccHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCccchhhHHHHHHcCChHHHHHhccCC
Q 040681 464 GSLARTFPAR----ETRVIGPLVAHLSHRNQEVATEAAIALQKFASPENFLCTEHSKAIIEFNAVPPLMRLLRGN 534 (594)
Q Consensus 464 ~~La~~~~~~----~~~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~~~~l~~~~~~~i~~~g~i~~Lv~lL~~~ 534 (594)
++++...... -..++|.|...|.+.+..++..|+.+++.++..- .+.-..... ..++.|++.+...
T Consensus 623 ~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~----~~~~~~~~~-~i~~~L~~~l~~~ 692 (861)
T d2bpta1 623 SALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL----EEDFRRYSD-AMMNVLAQMISNP 692 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT----GGGGHHHHH-HHHHHHHHHHHCT
T ss_pred HHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHh----HHHhHhhHH-HHHHHHHHHhCCC
Confidence 9998643221 1256788888899999999999999998876411 121111111 2456677777643
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.034 Score=60.29 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHHHHHhhC-ChhHHHHHHhcC--
Q 040681 164 AIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATALYNIAN-DQERVRVIVSEL-- 240 (594)
Q Consensus 164 ~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~-~~~~~~~iv~~g-- 240 (594)
.+.+++...|..++..+..+..........-.-...++.++..+.+++ +.++..++++++.++. .+.. +....
T Consensus 374 ~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~---~~~~~~~ 449 (876)
T d1qgra_ 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEA---AINDVYL 449 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGG---TSSTTTH
T ss_pred hhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHHcchh---hhhHHHh
Confidence 556778888888888888887653222211122346788899999888 9999999999999885 2211 11112
Q ss_pred --CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHH-----------HHH--cCChhhHHHhhhcCCcCCCccCccc
Q 040681 241 --GVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDD-----------FAR--ENVIRPLVTLLSFETFVDDPRANSG 305 (594)
Q Consensus 241 --~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~-----------i~~--~g~i~~Lv~lL~~~~~~~~~~~v~~ 305 (594)
.++.+...+. .++.++..+++++.+++......... +.. ...++.|...+......... ..
T Consensus 450 ~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~---~~ 525 (876)
T d1qgra_ 450 APLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNN---LR 525 (876)
T ss_dssp HHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTT---HH
T ss_pred hhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHh---HH
Confidence 2444454444 37889999999999997532110000 000 01223344444332111100 00
Q ss_pred hhhHHHHHHHhhhhcccccc-cCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCC-hhhHHHH
Q 040681 306 KQSIHTIVQINKEMEKNSFV-GSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGS-VANSRRI 383 (594)
Q Consensus 306 ~~si~~l~l~~~~~~~~~~~-~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~-~~~~~~i 383 (594)
..++..+............. -......++..+...... ........++.....++...+.++..+.... .+....
T Consensus 526 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~- 602 (876)
T d1qgra_ 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM--ESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ- 602 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT--TTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT-
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--hhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhh-
Confidence 11122221100000000000 000000000000000000 0000011111112233445556666654321 111111
Q ss_pred HhhCcHHHHHHHhhh--CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHH
Q 040681 384 SETKGLLCLAKLVEK--EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIK 461 (594)
Q Consensus 384 ~e~g~l~~L~~LL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~ 461 (594)
.....++.+..++.. ++..++..+..++..++..... .|. +....+++.++..+.+..++.++..|+.
T Consensus 603 ~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~-------~~~---~~l~~ii~~l~~~l~~~~~~~v~~~a~~ 672 (876)
T d1qgra_ 603 ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG-------EFL---KYMEAFKPFLGIGLKNYAEYQVCLAAVG 672 (876)
T ss_dssp THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG-------GGG---GGHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcch-------hhH---HHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 112356677777654 3457888888888777633211 122 2345688999999988877889999999
Q ss_pred HHHHhhcCChhh----hhccHHHHHHhccCC--CHHHHHHHHHHHHHhcC
Q 040681 462 SIGSLARTFPAR----ETRVIGPLVAHLSHR--NQEVATEAAIALQKFAS 505 (594)
Q Consensus 462 aL~~La~~~~~~----~~~~i~~Lv~lL~~~--~~~v~~~Aa~aL~nl~~ 505 (594)
+++.+++..... -..+++.++..|.+. +..++..++++++.++.
T Consensus 673 ~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~ 722 (876)
T d1qgra_ 673 LVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence 999998643321 125678888888654 45788889999887753
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.97 E-value=0.0019 Score=60.12 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=33.4
Q ss_pred CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHH
Q 040681 198 GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRVIVSELGVPTIVNVLSDSIMKVQIQVAS 262 (594)
Q Consensus 198 g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~iv~~g~i~~Lv~lL~~~~~~v~~~aa~ 262 (594)
-.+..|..|+++++ ++|+..|+..|. .+.|..++++++.+|+..++.
T Consensus 66 a~~~~L~~Ll~D~d-~~VR~~AA~~Lp-----------------~~~L~~L~~D~d~~VR~~aa~ 112 (233)
T d1lrva_ 66 SPVEALTPLIRDSD-EVVRRAVAYRLP-----------------REQLSALMFDEDREVRITVAD 112 (233)
T ss_dssp SCGGGGGGGTTCSS-HHHHHHHHTTSC-----------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCC-HHHHHHHHHHcC-----------------HHHHHHHhcCCChhHHHHHHh
Confidence 45777888999988 999988876432 244666677777777766654
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=94.24 E-value=1.7 Score=41.62 Aligned_cols=115 Identities=14% Similarity=0.188 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhhCcHHHHHHHhhhC-------CHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCCh
Q 040681 362 KIACAEALWMLARGSVANSRRISETKGLLCLAKLVEKE-------QGELQFNCLMTIMEITAAAESNADLRRAAFKTNSP 434 (594)
Q Consensus 362 ~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~LL~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~ 434 (594)
+..+.+||+|+ |.++ .++.|..++... +..++..|.+++..+. ..++.
T Consensus 189 ~~~~LkaLGN~--g~p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~---~~~p~----------- 243 (336)
T d1lsha1 189 IVLALKALGNA--GQPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIA---KRDPR----------- 243 (336)
T ss_dssp HHHHHHHHHHH--TCGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGG---GTCHH-----------
T ss_pred HHHHHHHHhcc--CCHh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhh---hcCcH-----------
Confidence 44578999998 5665 578888888542 3578999999997664 44441
Q ss_pred hhHHHHHHHHHHHhcC-CChhhHHHHHHHHHHhhcCChhhhhccHHHHHHhc-cCCCHHHHHHHHHHHHHhcCCCCc
Q 040681 435 AAKAVVDQLLRVINDL-DSPTLQIPAIKSIGSLARTFPARETRVIGPLVAHL-SHRNQEVATEAAIALQKFASPENF 509 (594)
Q Consensus 435 ~~~~~v~~Ll~lL~s~-~~~~v~~~a~~aL~~La~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~Aa~aL~nl~~~~~~ 509 (594)
.+-+.++.++.+. .+.++|..|...|..- .+ ....+..+...| .+.+.+|..-....|.+++...+|
T Consensus 244 ---~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P--~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P 312 (336)
T d1lsha1 244 ---KVQEIVLPIFLNVAIKSELRIRSCIVFFES---KP--SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 312 (336)
T ss_dssp ---HHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CC--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred ---HHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CC--CHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence 1334455555443 3378888887777552 11 234677777777 567888888888889998875553
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=2.7 Score=39.43 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=137.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CChHHHHHhhccCCCHHHHHHHHHHHHHhhCChhHHHH
Q 040681 158 VWSYIAAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEE--GGVPPLLKLLKETASSEAQSAAATALYNIANDQERVRV 235 (594)
Q Consensus 158 i~~lv~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~--g~I~~Lv~LL~~~~~~~v~e~A~~aL~~La~~~~~~~~ 235 (594)
+..++..|..=+-+.|.+++....++.+.....+...++. .--..|..|++..+++++-..+-..|+.+..++.-...
T Consensus 71 l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~ 150 (330)
T d1upka_ 71 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKI 150 (330)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHH
Confidence 4456777777788999999988888877544443222211 12233444444433467778888899999999888888
Q ss_pred HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcC---ChhhHHHhhhcCCcCCCccCccchhhHHHH
Q 040681 236 IVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFAREN---VIRPLVTLLSFETFVDDPRANSGKQSIHTI 312 (594)
Q Consensus 236 iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g---~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l 312 (594)
|.....+..+.+....++-++...|..++..|-..++.....+...+ .....-++|.+++
T Consensus 151 iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~N----------------- 213 (330)
T d1upka_ 151 ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSEN----------------- 213 (330)
T ss_dssp HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSS-----------------
T ss_pred HHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCc-----------------
Confidence 88888899999999999999999999999998776655444443333 1233344444431
Q ss_pred HHHhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHH----HHHhhCc
Q 040681 313 VQINKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSR----RISETKG 388 (594)
Q Consensus 313 ~l~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~----~i~e~g~ 388 (594)
-..++.+...|+.+- .+..+.. .+.+..-
T Consensus 214 ----------------------------------------------YVtrRqSlKLLgelL-ldr~N~~vm~~Yvs~~~n 246 (330)
T d1upka_ 214 ----------------------------------------------YVTKRQSLKLLGELL-LDRHNFTIMTKYISKPEN 246 (330)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHH-HSGGGHHHHHHHTTCHHH
T ss_pred ----------------------------------------------hHHHHHHHHHHHHHH-hhhhHHHHHHHHhCCHHH
Confidence 023556677777753 2344333 3334556
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 040681 389 LLCLAKLVEKEQGELQFNCLMTIMEITAAAESNADLRR 426 (594)
Q Consensus 389 l~~L~~LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~ 426 (594)
+..++.||++....+|..|-...--..+.....+.+..
T Consensus 247 Lkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~ 284 (330)
T d1upka_ 247 LKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 284 (330)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHH
Confidence 88999999999999999998887666555544555555
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.02 E-value=0.15 Score=46.62 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhccCchhHHHHHhcCChHHHHHhhccCCCHHHHHHHHHH
Q 040681 163 AAIQMGQLSDRIEAAIELASLAKDNDRNKKIIVEEGGVPPLLKLLKETASSEAQSAAATA 222 (594)
Q Consensus 163 ~~L~~~~~~~~~~Aa~~L~~la~~~~~~~~~i~~~g~I~~Lv~LL~~~~~~~v~e~A~~a 222 (594)
.+++..++.+|..|+..| +.+.|..++++++ .+++..++..
T Consensus 73 ~Ll~D~d~~VR~~AA~~L------------------p~~~L~~L~~D~d-~~VR~~aa~~ 113 (233)
T d1lrva_ 73 PLIRDSDEVVRRAVAYRL------------------PREQLSALMFDED-REVRITVADR 113 (233)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSC-HHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHc------------------CHHHHHHHhcCCC-hhHHHHHHhc
Confidence 344556666666655432 2456777777777 8888776653
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=3.7 Score=38.50 Aligned_cols=203 Identities=11% Similarity=0.106 Sum_probs=144.7
Q ss_pred HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCHHhHHHHHHcCChhhHHHhhhcCCcCCCccCccchhhHHHHHH
Q 040681 235 VIVSELGVPTIVNVLSDSIMKVQIQVASLVARMAEHDALAQDDFARENVIRPLVTLLSFETFVDDPRANSGKQSIHTIVQ 314 (594)
Q Consensus 235 ~iv~~g~i~~Lv~lL~~~~~~v~~~aa~aL~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~v~~~~si~~l~l 314 (594)
.+...+.+..|+..|..=+-+.|..++.+..++-... .|.=.|.|+.|.... + -+..++.
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~---------~~~~~p~v~Yl~~~~---e--------il~~L~~ 123 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQ---------IGTRTPTVEYICTQQ---N--------ILFMLLK 123 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCC---------BTTBCHHHHHHHTCT---H--------HHHHHHH
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcC---------CCCCCccHHHHHcCH---H--------HHHHHHh
Confidence 4455678899999999889999999999999987643 233344455554331 0 1122221
Q ss_pred HhhhhcccccccCCCcccccchhccccCCCccccccccCChHHHHHHHHHHHHHHHHhccCChhhHHHHHhhCcHHHHHH
Q 040681 315 INKEMEKNSFVGSKNYRPYLYSEYCSSRSGQNRKDRENEKPEVKIKLKIACAEALWMLARGSVANSRRISETKGLLCLAK 394 (594)
Q Consensus 315 ~~~~~~~~~~~~~g~~~~L~~~~~~~s~~~~~~~~~~~~dp~~k~~l~~~a~~aL~~L~~~~~~~~~~i~e~g~l~~L~~ 394 (594)
+ +++|+ .+.-++.+..-|..++..++.+.....+..+.+
T Consensus 124 g------------------------------------ye~~e-----iAl~~G~mLREcik~e~lak~iL~s~~f~~fF~ 162 (330)
T d1upka_ 124 G------------------------------------YESPE-----IALNCGIMLRECIRHEPLAKIILWSEQFYDFFR 162 (330)
T ss_dssp G------------------------------------GGSTT-----THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHH
T ss_pred h------------------------------------cCCcc-----hhhhhhHHHHHHHhhHHHHHHHHccHHHHHHHH
Confidence 1 12222 122344444444568889999999999999999
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHHHHhhcCChhhh
Q 040681 395 LVEKEQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSIGSLARTFPARE 474 (594)
Q Consensus 395 LL~~~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL~~La~~~~~~~ 474 (594)
.++.++=++...|..++..+- ..++.+.. .|..++ ...+.....++|.+.+ --.+..+++.||.+-....+..
T Consensus 163 yv~~~~FdiasDAf~TfkelL---t~hk~~~a-efl~~N--yd~Ff~~~~~LL~s~N-YVtrRqSlKLLgelLldr~N~~ 235 (330)
T d1upka_ 163 YVEMSTFDIASDAFATFKDLL---TRHKLLSA-EFLEQH--YDRFFSEYEKLLHSEN-YVTKRQSLKLLGELLLDRHNFT 235 (330)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH---HSSHHHHH-HHHHHT--HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHcCCchHHHHHHHHHHHHHH---HhCHHHHH-HHHHHh--HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999988775 45666655 355444 4668888889887665 8889999999999985443322
Q ss_pred h--------ccHHHHHHhccCCCHHHHHHHHHHHHHhcC
Q 040681 475 T--------RVIGPLVAHLSHRNQEVATEAAIALQKFAS 505 (594)
Q Consensus 475 ~--------~~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~ 505 (594)
. .-+..+..+|.+.+..+|.+|-...-=|++
T Consensus 236 vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 236 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 1 336788889999999999999988888877
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=91.40 E-value=6.1 Score=37.41 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=67.6
Q ss_pred cHHHHHHHhhh----CCHHHHHHHHHHHHHHHHHhcCCHHHHHHhhhcCChhhHHHHHHHHHHHhcCCChhhHHHHHHHH
Q 040681 388 GLLCLAKLVEK----EQGELQFNCLMTIMEITAAAESNADLRRAAFKTNSPAAKAVVDQLLRVINDLDSPTLQIPAIKSI 463 (594)
Q Consensus 388 ~l~~L~~LL~~----~~~~v~~~A~~aL~nL~~~~~~~~~~r~~~~~~~~~~~~~~v~~Ll~lL~s~~~~~v~~~a~~aL 463 (594)
.+..+..++++ .++.++..+.-++.++..-...+. -.......+.+.+.+.+.....+ .+-...++++|
T Consensus 124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~------~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~LkaL 196 (336)
T d1lsha1 124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT------VSCPDELLQPLHDLLSQSSDRAK-EEEIVLALKAL 196 (336)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC------SSCCGGGTHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHHHHHhhcccc-hHHHHHHHHHH
Confidence 35566666653 456777777777776652221110 01111223445566666666555 56667889999
Q ss_pred HHhhcCChhhhhccHHHHHHhccC-------CCHHHHHHHHHHHHHhcC
Q 040681 464 GSLARTFPARETRVIGPLVAHLSH-------RNQEVATEAAIALQKFAS 505 (594)
Q Consensus 464 ~~La~~~~~~~~~~i~~Lv~lL~~-------~~~~v~~~Aa~aL~nl~~ 505 (594)
||+. ....++.|...+.+ .+..++..|.+||.++++
T Consensus 197 GN~g------~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~ 239 (336)
T d1lsha1 197 GNAG------QPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 239 (336)
T ss_dssp HHHT------CGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred hccC------CHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhh
Confidence 9986 24678888888843 367899999999999987
|