Citrus Sinensis ID: 040691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
Protein Sequence
MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKNSD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHccccccccccccHHHHHHcccccccccccEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHEEccHHHcccccccccccccccccEEEcccccEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHcccccEEEcccHHHHHHHHHHHHccccHHHHHHHHHccHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHcccccHHcHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEcccHcccHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHcHHHHHHHHHHcccHHHHHHHHHHcccHcccccccccHHHHHHcccccHHHHHHHHHcHHHHHHHHHcccccccccHEEccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHccccHHHHHHccHEHEccHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHcccHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFyfvqnprlyrtkkivkpdndaycdvssggdvskvpiATREAQAALLEYLHSTRnlqfldaehmsknsPYFLEKILNKVGNDNEENIGRAITRFfryhpvnefepffeslglkpceyshllprdliflndddlLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVrnpkflvgdvNLEFIKVLEILKSMGIefswigehsteqsTFNWRTMFSFLSFCSKIGCSEEQLRILIRqhpeilfedsgNMALSLVGFLLKFGTSMNEICLMFqqfpqiklgeFFTNLRQCVVFLNEIEMEAKEIGNivrthpvllGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVmgcrlkplprlqlkeeeSDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAglerkdvcdmvrvAPLILKQKKEVLKTKIDYFvndfgypisslkpfpqylMYNMKTVKCRLSMYNwlkdrklveptlalstiitcsdklFVTRYvnrhpgghqvwqslknsd
Flexible Loop (DISEMBL)
MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFvqnprlyrtkkivkpdndAYCDVssggdvskvPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFeklglsqsfvrKVIVrnpkflvgdvnlEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLlevgfeenskQFETALKDLRTRARDLRERFDLiveaglerkdvcdmvRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRhpgghqvwqslknsd
Low Complexity Region (SEG)
MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRdliflndddlllENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCAlkktsslltilkVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKNSD
Disordered region (IsUnstruct)
******LRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTC********LTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQ********LKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVW*******
Disordered Region (DISOPRED)
***********ILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPR***********************************AALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK***
Disordered Region (DISEMBL)
MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQV********
Disordered Region (DISPRO)
****QKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIV******YCDV**GGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENxxxxxxxxxxxxxxxxxxxxxFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKNSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
225441407	589	PREDICTED: uncharacterized protein LOC10	0.986	0.979	0.552	0.0
255579009	523	conserved hypothetical protein [Ricinus	0.856	0.957	0.600	1e-178
224137882	582	predicted protein [Populus trichocarpa]	0.979	0.984	0.531	1e-176
224137886	567	predicted protein [Populus trichocarpa]	0.957	0.987	0.530	1e-171
255579011	578	conserved hypothetical protein [Ricinus	0.976	0.987	0.515	1e-171
255579007	573	conserved hypothetical protein [Ricinus	0.970	0.991	0.529	1e-170
224137890	567	predicted protein [Populus trichocarpa]	0.957	0.987	0.524	1e-166
449457339	594	PREDICTED: uncharacterized protein LOC10	0.976	0.961	0.488	1e-158
449531338	594	PREDICTED: uncharacterized LOC101221161	0.976	0.961	0.488	1e-157
357509907	571	hypothetical protein MTR_7g093000 [Medic	0.905	0.928	0.516	1e-152

>gi|225441407|ref|XP_002275246.1| PREDICTED: uncharacterized protein LOC100241837 [Vitis vinifera] gi|147864060|emb|CAN83222.1| hypothetical protein VITISV_031366 [Vitis vinifera] gi|297739852|emb|CBI30034.3| unnamed protein product [Vitis vinifera]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/588 (55%), Positives = 426/588 (72%), Gaps = 11/588 (1%)

Query: 1   MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDN--- 57
           MN  QKLRT  + +WV+ N  +N ++SS+  F   GSF   QNPR Y  K   + +N   
Sbjct: 1   MNRFQKLRTKSVFKWVSLNFSENLLKSSKAPFLGAGSFRIRQNPRFYGRKTSAESENFQS 60

Query: 58  ---DAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILN 114
               +  D  + G +S+   A  +AQAALLEYLH TR+LQF+DAE+MSKNSP+FLEKIL 
Sbjct: 61  PVETSTVDFENVGHISRTTRA--QAQAALLEYLHCTRSLQFMDAENMSKNSPFFLEKILG 118

Query: 115 KVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLEN 174
           KV N+ E  IG++ITRF RYHP+NEFEPFFESLGL P E+++LLPR+L+FL DD +LLEN
Sbjct: 119 KVKNEAE--IGKSITRFLRYHPINEFEPFFESLGLTPSEFTNLLPRNLMFLCDDQVLLEN 176

Query: 175 YHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFL 234
           Y++LCNYG AR KIG IYKEA EVFRYD G+LR KLQA+ +LGLSQS + K I  +P  L
Sbjct: 177 YYILCNYGIARNKIGKIYKEAPEVFRYDSGILRLKLQAYLELGLSQSTMIKAIASSPYLL 236

Query: 235 VGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRIL 294
           +GD N++F+K +E LKS+GIE +WI +H +E + ++W  M   L   SK+G + EQL  L
Sbjct: 237 IGDANMDFVKAMEKLKSVGIESNWIEKHLSEGNYYDWSQMVGLLCLFSKMGFNGEQLGEL 296

Query: 295 IRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLN 354
           IRQHP IL E SGN+A SLVG LLKFG + NEI + F QFP I+ G+F+ N R C +FL 
Sbjct: 297 IRQHPGILLECSGNLAHSLVGLLLKFGFTTNEIYIFFLQFPPIEFGKFYRNFRHCYLFLI 356

Query: 355 EIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGC 414
           EIE+E +EIG IVR+H VLLG+CALK+ +SLL  L +G+KRLC II ++PQE+KKWV+G 
Sbjct: 357 EIELEVEEIGRIVRSHTVLLGSCALKRVNSLLANLNIGKKRLCGIIKDNPQELKKWVLGS 416

Query: 415 RLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAG 474
           R+ PLP L  ++  S   K +FL ++G+ EN+K+ E A K  R +  +L+ERFD +++AG
Sbjct: 417 RVGPLPNLG-EDLRSQLQKTKFLSDLGYVENTKEIEKARKLFRGKGMELQERFDFLMKAG 475

Query: 475 LERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRL 534
           L+RKDV +M++VAP IL Q  +V++ KIDY ++  GYPISSL  FP YL Y  + V+ R+
Sbjct: 476 LDRKDVSEMIKVAPQILNQSTDVIEMKIDYLIHALGYPISSLVTFPSYLSYTTERVELRM 535

Query: 535 SMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
           SMYNWLKD+ + EP LALSTII CSD  F+ RYVNRHP G ++W+ LK
Sbjct: 536 SMYNWLKDQGVAEPNLALSTIIACSDNYFIDRYVNRHPKGAEIWEKLK 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579009|ref|XP_002530356.1| conserved hypothetical protein [Ricinus communis] gi|223530103|gb|EEF32017.1| conserved hypothetical protein [Ricinus communis]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/511 (60%), Positives = 394/511 (77%), Gaps = 10/511 (1%)

Query: 75  ATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFRY 134
           A ++AQAALLEYLHSTR+LQ  DAEHMSK SP FLEK+L KV  D +E++GR++ RF RY
Sbjct: 14  ARKQAQAALLEYLHSTRSLQVTDAEHMSKGSPSFLEKLLQKV--DIKEDVGRSVARFLRY 71

Query: 135 HPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKE 194
           HP+NEFEPFFESLGL+P EY   LPRDL+FL+DD+LLLEN H LCNYG  R KIG IY E
Sbjct: 72  HPINEFEPFFESLGLRPAEYRPFLPRDLMFLSDDELLLENLHTLCNYGIPRNKIGRIYIE 131

Query: 195 ATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGI 254
           A EVF YD+GVL +KL+A+E++GL QSF+ K++V +P  L+GDVN++FIK +EIL+  GI
Sbjct: 132 AGEVFGYDYGVLATKLRAYEEMGLDQSFMAKIVVCSPYLLIGDVNVDFIKSMEILRKGGI 191

Query: 255 EFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLV 314
           E  WI +H +E+ ++NW  + + L+  SK    EEQL  +I QHP I+FE SG+  LSL+
Sbjct: 192 ELCWIEKHLSEKCSYNWSKLHALLNLFSKACFREEQLCEIISQHPGIVFEGSGDRTLSLI 251

Query: 315 GFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLL 374
           GFL+KFG+S N+IC MF QFPQIK+G+F  N+RQC +FL EIEME  EIG I+R++P++L
Sbjct: 252 GFLVKFGSSKNQICSMFLQFPQIKVGKFLLNMRQCFLFLTEIEMEILEIGKIIRSYPLML 311

Query: 375 GTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLP---RLQLKEEESDT 431
           G+C LKK++SLL+ L VG+KRLC IIL++PQEMK WV+G ++ PLP   RL+     S  
Sbjct: 312 GSCTLKKSNSLLSCLNVGKKRLCNIILQNPQEMKNWVIGSKVNPLPSDERLR-----SRM 366

Query: 432 LKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLIL 491
           LK +FLL++GF ENS + E ALK  R R  +L+ERFD I+EAGL++KDV +MVR AP IL
Sbjct: 367 LKNKFLLDLGFVENSTEMEKALKVFRGRGAELQERFDSIMEAGLDKKDVHEMVRQAPQIL 426

Query: 492 KQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLA 551
            QKKEV+K KID+FVND G+PISSL  FP +L Y + TVK +L+MYNWLKD+  V+P L+
Sbjct: 427 NQKKEVVKMKIDFFVNDLGFPISSLVTFPAFLNYTIPTVKLKLAMYNWLKDQGKVDPMLS 486

Query: 552 LSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
           LST+I+ SDKLFV RYV  HP G + WQ LK
Sbjct: 487 LSTLISTSDKLFVKRYVELHPKGSEFWQDLK 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137882|ref|XP_002322675.1| predicted protein [Populus trichocarpa] gi|222867305|gb|EEF04436.1| predicted protein [Populus trichocarpa]

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/585 (53%), Positives = 427/585 (72%), Gaps = 12/585 (2%)

Query: 1   MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAY 60
           MNHL KL+   IL+ V+ N      R    ++++    Y V+NP  Y TK  ++ +N   
Sbjct: 1   MNHLHKLQ---ILKRVSPNFVG---RCRNPIWQVGSLCYIVENPTFYGTKTTLQTENLDR 54

Query: 61  CDVSSGGDVSKVP-IATREAQA--ALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVG 117
             + +   +SK+   A REAQA  ALLEYLHSTR+ QFLDAEHMSK SP F++ +L KV 
Sbjct: 55  NLIGNDQSISKISDAARREAQASTALLEYLHSTRSFQFLDAEHMSKYSPVFVKNLLKKVN 114

Query: 118 NDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHV 177
            D   +I R+ITR+ RYHP+NEFE FFES+GLKP EYS LLPRDL++L+DDDLLLENYHV
Sbjct: 115 ID--ADIRRSITRYLRYHPINEFEIFFESMGLKPQEYSSLLPRDLMYLSDDDLLLENYHV 172

Query: 178 LCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGD 237
           +CNYG AR K+G IYKEATEVFRYD+GVL  KL+A+EKLGLS SF+ KV+VR+P  L+GD
Sbjct: 173 MCNYGIARNKMGKIYKEATEVFRYDYGVLALKLKAYEKLGLSSSFIAKVVVRSPDLLIGD 232

Query: 238 VNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQ 297
            N++FIK+LE+L+  G+E+  I +  +++ST+NW  + S L+   K G ++EQL  LI Q
Sbjct: 233 ANIDFIKILELLRKGGLEYRRIEKLLSDKSTYNWSQLLSLLNLFGKAGYNDEQLSELISQ 292

Query: 298 HPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIE 357
            P IL EDS + AL L+GFLLKFG++MN+IC +F QFP++++ +F +NLR C +FLNEI 
Sbjct: 293 KPWILREDSVDRALLLIGFLLKFGSTMNQICSLFLQFPKVQVEKFASNLRHCFLFLNEIN 352

Query: 358 MEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLK 417
           MEA EIG + R+HP+ +G+  LKKT+SLL+ L  G+KR+C +I E+P+ MKKWV G +++
Sbjct: 353 MEAYEIGKLFRSHPIFIGSFTLKKTNSLLSRLNAGKKRICEVIQENPEIMKKWVKGSKIE 412

Query: 418 PLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLER 477
            LP    +E  S  LK +F L++GF ENS + + ALK  R R  +L+ERFD +V AGL+R
Sbjct: 413 WLPD-SGEELRSQMLKTKFFLDLGFVENSDEMKRALKVFRGRGAELQERFDCLVIAGLDR 471

Query: 478 KDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMY 537
           KDVC+M++V+P IL QK+EV++ KID+ +ND G+P+SSL  FP YL Y M+  K RL+MY
Sbjct: 472 KDVCEMIKVSPQILNQKREVIEMKIDFLINDLGFPVSSLVRFPSYLSYTMQRAKLRLTMY 531

Query: 538 NWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
           NWLK++  V P L+ STI+ C+D +F+++YV+RHP G ++W+ LK
Sbjct: 532 NWLKEQGKVNPMLSFSTIVGCTDNVFLSQYVDRHPRGPEIWEDLK 576

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137886|ref|XP_002322676.1| predicted protein [Populus trichocarpa] gi|222867306|gb|EEF04437.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 309/583 (53%), Positives = 412/583 (70%), Gaps = 23/583 (3%)

Query: 1   MNHLQKLRTTYILRWVASNCFQNHIRSSET-LFRLIGSFYFVQNPRLYRTKKIVKPDNDA 59
           M H  K +   I +WV+SN     + S++T L  ++  F   +NPR Y TK+IV+ +N  
Sbjct: 1   MTHFGKFK---IFKWVSSN----FVSSNKTPLSSMVSLFNIAENPRFYITKRIVQAEN-- 51

Query: 60  YCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGND 119
                 G  +S  P++  EAQAALLEYLH TRN+QF DAE+MSKNSP+FLEK+L KV  D
Sbjct: 52  ------GQSIS--PLSRTEAQAALLEYLHFTRNIQFTDAENMSKNSPHFLEKLLAKV--D 101

Query: 120 NEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLC 179
            + +IG++ITR+  +HP+NEFEPFFESLGLKP +Y+ LLPRDL+FL DDDLLLENYHVLC
Sbjct: 102 IDASIGQSITRYLCFHPINEFEPFFESLGLKPHDYNPLLPRDLMFLCDDDLLLENYHVLC 161

Query: 180 NYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVN 239
           NYG AR KIG IYKEA EVF YD+GVL  KL+A+E+LGL QSF+ K++V +P  L+G+VN
Sbjct: 162 NYGIARSKIGKIYKEAAEVFGYDYGVLVLKLKAYEELGLGQSFMMKLVVCSPYLLIGEVN 221

Query: 240 LEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHP 299
            +F+KVL IL+  G++ S I EH +E+S+++W  + + L+     G +EEQL  LI +H 
Sbjct: 222 ADFVKVLGILRKEGVDISRIEEHLSEKSSYDWSKLLALLNLFRHAGYNEEQLGGLISRHL 281

Query: 300 EILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEME 359
            I FEDS +    L+GFLLKFG++MN+IC MF QFPQ++  EFF+NLR C +FL EI+ME
Sbjct: 282 GIFFEDSVDRIYLLIGFLLKFGSTMNQICSMFLQFPQMEFEEFFSNLRHCFLFLKEIQME 341

Query: 360 AKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPL 419
           A EI NI  +HP++LG+C LKK ++L   L    KR+C +I E PQ +KKWVMG +++ L
Sbjct: 342 AHEIRNIFHSHPLMLGSCRLKKPNTLRLALHAADKRMCEVIQESPQVLKKWVMGSKVERL 401

Query: 420 PRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKD 479
             L LK   S   K +FLL++G  ++S +   ALK  R     ++ERFD IVEAGL RKD
Sbjct: 402 QNLILK---SRMQKTKFLLDLGIVDDSNEIGKALKVFRGSGAKIQERFDCIVEAGLSRKD 458

Query: 480 VCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNW 539
           VC+M++ +P IL Q K+VL+ KID+ VN  GYP+S L  FP YL Y M+ V+ RL+MYNW
Sbjct: 459 VCEMIKASPQILNQTKDVLEMKIDFLVNKVGYPVSYLVTFPSYLNYTMERVELRLAMYNW 518

Query: 540 LKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
           LKD+    P L+LST+I+ SDK F+  YVN HP G ++WQ+LK
Sbjct: 519 LKDQGKSVPMLSLSTVISLSDKKFINEYVNSHPRGPEIWQNLK 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579011|ref|XP_002530357.1| conserved hypothetical protein [Ricinus communis] gi|223530104|gb|EEF32018.1| conserved hypothetical protein [Ricinus communis]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/586 (51%), Positives = 413/586 (70%), Gaps = 15/586 (2%)

Query: 1   MNHLQKLRTTYILRWVASN---CFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDN 57
           M HL KL+T  IL+WV+SN   C++    SS + F          NP LYR K++V  DN
Sbjct: 1   MTHLNKLQTLSILKWVSSNSVDCYKIPFLSSRSFFDP------ANNPSLYRKKRVVDNDN 54

Query: 58  DAYCDVSSGGDVSKVPIATREAQAA-LLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKV 116
                +  G   S+   A R+   A LLEYL  TR+LQF  AEHMSKNSP FLEK+L +V
Sbjct: 55  VEKNLMHDGQIRSQFSKAARKQAQAALLEYLRFTRSLQFTLAEHMSKNSPSFLEKLLQRV 114

Query: 117 GNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYH 176
             D  E++G ++ RF RYHP+NEFEPFFESLGL+P ++   LP DLIFL+DD+LLLEN+H
Sbjct: 115 YVD--EDVGWSVPRFLRYHPINEFEPFFESLGLRPYQFVAFLPHDLIFLSDDELLLENFH 172

Query: 177 VLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVG 236
            LCNYG    KIG I+KEA E+F Y++G+L  KL+ +E+LGL QS + K++V +P  L G
Sbjct: 173 TLCNYGIPMNKIGRIFKEAGEIFGYNYGILEMKLRTYEELGLDQSLMGKIVVCSPYLLTG 232

Query: 237 DVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIR 296
           DV+++F+K +EI++  GIEF WI +H +E+ ++NW  + + L+  SK G +EEQL  +I 
Sbjct: 233 DVDIDFVKSMEIVRKGGIEFRWIEKHLSEKCSYNWSQLHALLNLFSKTGYNEEQLCAIIS 292

Query: 297 QHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEI 356
           QHP I+FE SGNM LSL+GFL+KFG+S+N+IC MF QFPQ+++G F  N++QC +FL EI
Sbjct: 293 QHPGIIFEGSGNMTLSLIGFLVKFGSSINQICSMFSQFPQMRVGRFLLNMKQCFLFLTEI 352

Query: 357 EMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRL 416
           ++E  EIG I+R+HP++LG+C LKK+SSL++IL  G+KR+C IIL++P EMK WV+G ++
Sbjct: 353 KLEILEIGKIIRSHPLMLGSCTLKKSSSLISILNAGKKRICNIILQNPLEMKNWVIGSKI 412

Query: 417 KPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLE 476
            PLP  +L+   S  LK +FLL++GF +NS + E ALK  +    +L ERFD I++AGL+
Sbjct: 413 NPLPSERLR---SRILKIKFLLDLGFVKNSIEMEKALKVFKGSGAELHERFDCIMQAGLD 469

Query: 477 RKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSM 536
           +KD C+++R AP IL QKKEV+K KID+ VND GYPISSL  FP  L Y + TVK +  M
Sbjct: 470 KKDACEIIRQAPPILNQKKEVIKMKIDFLVNDLGYPISSLLTFPTILTYAIPTVKLKWVM 529

Query: 537 YNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
            NWLKD+ +V P  +L ++   SDK F+ RYV  HP G + WQ+LK
Sbjct: 530 SNWLKDQGIVVPMCSLRSLFKNSDKAFIKRYVKLHPKGFEFWQNLK 575

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579007|ref|XP_002530355.1| conserved hypothetical protein [Ricinus communis] gi|223530102|gb|EEF32016.1| conserved hypothetical protein [Ricinus communis]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 309/584 (52%), Positives = 410/584 (70%), Gaps = 16/584 (2%)

Query: 1   MNHLQKLRTTYILRWVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDNDAY 60
           M HL KLR   IL+WV+SN   +H    +     IG  +     R Y ++++   D+ A 
Sbjct: 1   MTHLHKLRKQSILKWVSSNFIDSH----KIPLWPIGYKF-----RFYGSERVEICDDLAN 51

Query: 61  CDVSSGGDVSKVPIAT-REAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGND 119
             V S   + K+   T + AQAALLEYLH TR++ F+DAE+MS NSP+FL+K+L K+  D
Sbjct: 52  PSVDSNRSIGKISRTTVKGAQAALLEYLHVTRSIPFMDAENMSVNSPHFLKKLLQKI--D 109

Query: 120 NEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLC 179
           N  +IG ++TRF RYHP+NEFEPFFESLGLKP E   LLPRDL+FL+DDDLLLENY+VLC
Sbjct: 110 NGTDIGWSVTRFLRYHPINEFEPFFESLGLKPYELIPLLPRDLMFLSDDDLLLENYYVLC 169

Query: 180 NYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVN 239
           NYG  R KIG IYKEA E+F Y++G L SKL+A+E+LGLSQ F+ KV+  +P  L+GDVN
Sbjct: 170 NYGIPRYKIGRIYKEAMEIFGYNYGALASKLEAYEQLGLSQYFICKVVACSPYLLIGDVN 229

Query: 240 LEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHP 299
           ++F+KV++IL+  GIEFSWI EH  E S +NWR + + L+   K G +E QL  LI  HP
Sbjct: 230 VDFVKVVKILREGGIEFSWIEEHLMENS-YNWRQILALLNLFRKAGYNEAQLGALISHHP 288

Query: 300 EILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEME 359
            ILFE SG+  LSL+GFL K G SMN+IC MF QFP++++G+F  NL++C + L +IEM+
Sbjct: 289 GILFEGSGDKTLSLIGFLFKLGCSMNQICSMFLQFPEMQVGKFVYNLKRCFLLLTDIEMD 348

Query: 360 AKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPL 419
             EIG IV +H +LLG+  LK+T+S+L  L +G+KRL  +I E+PQEMK+W MG R++ L
Sbjct: 349 INEIGKIVCSHLLLLGSFTLKRTNSILANLNIGKKRLHKLIQENPQEMKRWEMGSRVERL 408

Query: 420 PRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKD 479
           P      EES TLK +FL+++G   N  + E ALK  R R  +++ERFD IV+AGL+RKD
Sbjct: 409 PS---SWEESKTLKTKFLVDMGLVNNLNKMEQALKVFRGRGTEIQERFDCIVKAGLDRKD 465

Query: 480 VCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNW 539
           V +M++ +P IL QKKE+L+ KID+ VN  GYP S L  FP YL Y +  VK RLSMY W
Sbjct: 466 VLEMIKTSPQILNQKKEILEKKIDFLVNGLGYPASYLVNFPSYLNYTIVRVKLRLSMYTW 525

Query: 540 LKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKN 583
           LK++  ++  LALST+I C++ LFV +YV  HP G  VWQ LKN
Sbjct: 526 LKEQGTIDSKLALSTVIACAENLFVEQYVKHHPRGPVVWQDLKN 569

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137890|ref|XP_002322677.1| predicted protein [Populus trichocarpa] gi|222867307|gb|EEF04438.1| predicted protein [Populus trichocarpa]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 306/583 (52%), Positives = 409/583 (70%), Gaps = 23/583 (3%)

Query: 1   MNHLQKLRTTYILRWVASNCFQNHIRSSET-LFRLIGSFYFVQNPRLYRTKKIVKPDNDA 59
           M H  K +   I  WV+SN     + S++T L  ++  F   ++P  YRTK+IV+ +N  
Sbjct: 1   MTHFGKFK---IFNWVSSN----FVGSNKTPLSSMMSLFNIAESPMFYRTKRIVQAENGQ 53

Query: 60  YCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGND 119
             +          P++   AQ ALLEYL+ TRN+QF DA++MSKNSP+FLEK+L KV  D
Sbjct: 54  SIN----------PVSRIAAQTALLEYLYVTRNIQFTDADNMSKNSPHFLEKLLAKV--D 101

Query: 120 NEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLC 179
            + +IG +ITRF  +HP+NEFEPFFESLGLKP +Y+ LLPRDL+FL DDDLLLENYHVLC
Sbjct: 102 IDADIGHSITRFLCFHPINEFEPFFESLGLKPHDYNPLLPRDLMFLCDDDLLLENYHVLC 161

Query: 180 NYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVN 239
           NYG AR KIG IYKEATEVF YD+GVL  KL+A+E+LGL QSF+ K++V +P  L+G+VN
Sbjct: 162 NYGIARSKIGKIYKEATEVFGYDYGVLVLKLKAYEELGLVQSFMMKLVVCSPYLLIGEVN 221

Query: 240 LEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHP 299
            +FIKVLEIL+  G++ S I EH +E+S+++W  + + L+     G +EEQL  LI QH 
Sbjct: 222 ADFIKVLEILRKEGVDISRIEEHLSEKSSYDWSKLLALLNLFRHAGYNEEQLGGLISQHL 281

Query: 300 EILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEME 359
            I FEDS +    L+GFLLKFG++MN+IC MF  FPQ++  EFF+NLR C +FLNEI+ME
Sbjct: 282 AIFFEDSVDRIYLLIGFLLKFGSTMNQICSMFLWFPQMEFEEFFSNLRHCFLFLNEIQME 341

Query: 360 AKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPL 419
           A EI +I R+HP++LG+C LKK ++L   L    KR+C +I E PQ +KKWVMG ++K L
Sbjct: 342 AHEIQSIFRSHPLMLGSCRLKKPNTLRLALHAAEKRMCEVIQESPQVLKKWVMGSKVKRL 401

Query: 420 PRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKD 479
           P L+LK   S  LK +FLL++G  +NS +   ALK  R      +ERFD IVEAG+ RKD
Sbjct: 402 PNLRLK---SRKLKTKFLLDLGIVDNSNKIGKALKVFRGSGEKFQERFDCIVEAGVSRKD 458

Query: 480 VCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNW 539
           VC+M++ +P IL Q K+VL+ KID+ VN  GYP+S L  FP YL +  + V+ RL+MYNW
Sbjct: 459 VCEMIKASPQILGQSKDVLEMKIDFLVNKVGYPVSYLVTFPSYLNFTTQRVELRLAMYNW 518

Query: 540 LKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
           LKD+    P L+L ++I+ SDK F+  YVN HP G ++WQ+LK
Sbjct: 519 LKDQGKSVPMLSLRSLISLSDKKFINEYVNSHPRGPEIWQNLK 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457339|ref|XP_004146406.1| PREDICTED: uncharacterized protein LOC101221161 [Cucumis sativus]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/592 (48%), Positives = 410/592 (69%), Gaps = 21/592 (3%)

Query: 1   MNHLQKLRTTYILR--WVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDND 58
           M++LQ LR   +L    +A + F N +R    L+   G      NPR Y  KK   P  +
Sbjct: 1   MSYLQNLRALSMLSSSIIADSKF-NFVR---VLYWRFGFPSVASNPRFYGNKK--APQTE 54

Query: 59  AYCDVSSGGDVS-------KVPIAT-REAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLE 110
            + +  SGG ++       ++  AT +EAQAA+LEYLHSTR +QF DA+ MSKNSP FL+
Sbjct: 55  EHKN--SGGMLNMRSRNGRRISRATIKEAQAAMLEYLHSTRGIQFFDADIMSKNSPIFLK 112

Query: 111 KILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDL 170
           K+L +V  ++E +IGR+I RF RYHP+NEFEPFFES+GL+P EY+  LPR+L+FL+DDDL
Sbjct: 113 KLLGRV--EHEGDIGRSIIRFLRYHPINEFEPFFESVGLQPAEYNAFLPRNLMFLSDDDL 170

Query: 171 LLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRN 230
           LLEN+HVL NYG  R K G IYKE T++FRY++GVL SKL+A+EKLGLSQ+ V  ++V N
Sbjct: 171 LLENFHVLFNYGVERNKTGKIYKEVTQIFRYEYGVLLSKLKAYEKLGLSQAKVANIVVCN 230

Query: 231 PKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQ 290
           P  L+G VN  F+KVLE L+++G E SW+ E  T+ +++NW+ +   L +  ++GC +E+
Sbjct: 231 PYLLIGGVNDRFVKVLEKLENIGFELSWVEEQLTDGNSYNWKQILGLLFWFEQMGCGKEK 290

Query: 291 LRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCV 350
           L  LI Q P++L EDSG+ +L+L+G LLK G SM +IC +F QFPQI++GEF +N+RQC 
Sbjct: 291 LADLISQRPDLLLEDSGSKSLTLIGLLLKMGCSMVQICSVFLQFPQIRVGEFVSNMRQCF 350

Query: 351 VFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKW 410
           +  NEI M+ +EIG + R+ P+LLG   LK+  SLL  L VG++RLC  +LE+P+E+K  
Sbjct: 351 LVFNEINMDVQEIGYLFRSRPLLLGLYTLKRAKSLLGSLNVGKQRLCQFLLENPEELKNL 410

Query: 411 VMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLI 470
            +G R+  LP    +   S   K +FLL++G EENS + + ALK  R +   L+ERFD I
Sbjct: 411 RIGKRVLRLPD-SGEVMRSKQQKTQFLLKLGLEENSTEMKEALKVFRGKVAILQERFDCI 469

Query: 471 VEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTV 530
           VEAG+++KDV  M++V P I+  +K+ ++ KID+ VN+  YP+SSL  FP+YL ++ K V
Sbjct: 470 VEAGIDKKDVYKMIKVCPRIINLRKDTIEEKIDFLVNNLEYPVSSLISFPKYLAFSTKLV 529

Query: 531 KCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
             R SMYNWLK++   +P LAL TI++CS+  F+  +VNRHP G +VW++LK
Sbjct: 530 ALRFSMYNWLKEQGTADPMLALKTIVSCSEYEFLRHHVNRHPRGMEVWENLK 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531338|ref|XP_004172643.1| PREDICTED: uncharacterized LOC101221161 [Cucumis sativus]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/592 (48%), Positives = 409/592 (69%), Gaps = 21/592 (3%)

Query: 1   MNHLQKLRTTYILR--WVASNCFQNHIRSSETLFRLIGSFYFVQNPRLYRTKKIVKPDND 58
           M++LQ LR   +L    +A + F N +R    L+   G      NPR Y  KK   P  +
Sbjct: 1   MSYLQNLRALSMLSSSIIADSKF-NFVR---VLYWRFGFPSVASNPRFYGNKK--APQTE 54

Query: 59  AYCDVSSGGDVS-------KVPIAT-REAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLE 110
            + +  SGG ++       ++  AT +EAQAA+LEYLHSTR +QF DA+ MSKNSP FL+
Sbjct: 55  EHKN--SGGMLNMCSRNGRRISRATIKEAQAAMLEYLHSTRGIQFFDADIMSKNSPIFLK 112

Query: 111 KILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDL 170
           K+L +V  ++E +IGR+I RF RYHP+NEFEPFFES+GL+P EY+  LPR+L+FL+DDDL
Sbjct: 113 KLLGRV--EHEGDIGRSIIRFLRYHPINEFEPFFESVGLQPAEYNAFLPRNLMFLSDDDL 170

Query: 171 LLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRN 230
           LLEN+HVL NYG  R K G IYKE T++FRY++GVL SKL+A+EKLGLSQ+ V  ++V N
Sbjct: 171 LLENFHVLFNYGVERNKTGKIYKEVTQIFRYEYGVLLSKLKAYEKLGLSQAKVANIVVCN 230

Query: 231 PKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQ 290
           P  L+G VN  F+KVLE L+++G E SW+ E  T+ +++NW+ +   L +  ++GC +E+
Sbjct: 231 PYLLIGGVNDRFVKVLEKLENIGFELSWVEEQLTDGNSYNWKQILGLLFWFEQMGCGKEK 290

Query: 291 LRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCV 350
           L  LI Q P++L EDSG+ +L+L+G LLK G SM +IC +F QFPQI++GEF +N+RQC 
Sbjct: 291 LADLISQRPDLLLEDSGSKSLTLIGLLLKMGCSMVQICSVFLQFPQIRVGEFVSNMRQCF 350

Query: 351 VFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKW 410
           +  NEI M+ +EIG + R+ P+LLG   LK+  SLL  L VG++RLC  +LE+P+E+K  
Sbjct: 351 LVFNEINMDVQEIGYLFRSRPLLLGLYTLKRAKSLLGSLNVGKQRLCQFLLENPEELKNL 410

Query: 411 VMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLI 470
            +G R+  LP    +   S   K +FLL++G EENS + + ALK  R +   L+ERFD I
Sbjct: 411 RIGKRVLRLPD-SGEVMRSKQQKTQFLLKLGLEENSTEMKEALKVFRGKVAILQERFDCI 469

Query: 471 VEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTV 530
           VEAG++ KDV  M++V P I+  +K+ ++ KID+ VN+  YP+SSL  FP+YL ++ K V
Sbjct: 470 VEAGIDEKDVYKMIKVCPRIINLRKDTIEEKIDFLVNNLEYPVSSLISFPKYLAFSTKLV 529

Query: 531 KCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLK 582
             R SMYNWLK++   +P LAL TI++CS+  F+  +VNRHP G +VW++LK
Sbjct: 530 ALRFSMYNWLKEQGTADPMLALKTIVSCSEYEFLRHHVNRHPRGMEVWENLK 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509907|ref|XP_003625242.1| hypothetical protein MTR_7g093000 [Medicago truncatula] gi|355500257|gb|AES81460.1| hypothetical protein MTR_7g093000 [Medicago truncatula]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/550 (51%), Positives = 379/550 (68%), Gaps = 20/550 (3%)

Query: 43  NPRLYRTKKIVKPDNDAYCDVSSGGDV-SKVPIATREAQAALLEYLHSTRNLQFLDAEHM 101
           NPR Y T K  KP       ++S   + SK+ I  +EAQAALLEYLHSTR+LQFLDA++M
Sbjct: 24  NPRFYNTAK--KP-----IQLNSKPKILSKLTI--KEAQAALLEYLHSTRSLQFLDADNM 74

Query: 102 SKNSPYFLEKILNK-VGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPR 160
            KNSP+FL+ +++K + N+N  N  R I+R  RY+P+NEFEPFFESLGLKP EY  LLPR
Sbjct: 75  CKNSPFFLQNLVHKTLKNENSINTKRLISRHLRYNPINEFEPFFESLGLKPSEYESLLPR 134

Query: 161 DLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQ 220
           DLIFLNDD LL+ NYH LCNYG  R K+G I+K+A +VF+++ GVL SK++A+E LG+S 
Sbjct: 135 DLIFLNDDPLLMANYHTLCNYGVPRSKMGKIFKQAPQVFKFENGVLVSKIKAYEDLGISA 194

Query: 221 SFVRKVIVRNPKFLVGDVNLEFIKVLEILKSM-------GIEFSWIGEHSTEQSTFNWRT 273
           S +   +  +P  LVGDVN+EF+KV+E+LK++         +  WI  H  ++ + NW  
Sbjct: 195 SILVNAVAVSPGILVGDVNVEFVKVVEMLKNIVAKGGDGDFDSGWIQWHYLDEVSCNWGL 254

Query: 274 MFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQ 333
           M   L   S  G SE+QL  +I + P I+FE+SG   LS++GFL+KFG S+N+I L+F +
Sbjct: 255 MLELLCLLSDTGFSEKQLAEIIHRSPCIVFEESGGKTLSMIGFLVKFGLSVNQIALLFLE 314

Query: 334 FPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGR 393
           FPQI + +FF NLR C+  L EIEMEAKEIG I ++H +L G+  LK T SLL  L VG+
Sbjct: 315 FPQILMVKFFANLRVCLQLLTEIEMEAKEIGKIFQSHTILAGSNTLKTTKSLLGCLNVGK 374

Query: 394 KRLCAIILEDPQEMKKWVMGCRLKPLPRLQ-LKEEESDTLKAEFLLEVGFEENSKQFETA 452
           +RLC+I+ ++P EMK WV+G R+KP+  L+ L+EE+S   K EFLL +G+ EN+K+ ++A
Sbjct: 375 RRLCSILQDNPHEMKNWVLGIRVKPMVGLRDLEEEKSRVGKTEFLLRLGYVENTKEMDSA 434

Query: 453 LKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYP 512
            K  R +  +L+ERFD IV AGL R +V  M+RV+P IL Q  + +K KI+Y V   G+ 
Sbjct: 435 FKAFRGKGAELQERFDFIVNAGLTRDEVRRMIRVSPQILNQNTDRVKMKIEYLVKK-GFS 493

Query: 513 ISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHP 572
           +S L  FP YL Y    VK RLSMYNWL D   V P LALSTII C+D LF+  YV RHP
Sbjct: 494 VSDLVNFPSYLSYKSPRVKLRLSMYNWLVDHGAVTPGLALSTIIACTDNLFLQSYVKRHP 553

Query: 573 GGHQVWQSLK 582
            G QVW+ L+
Sbjct: 554 SGLQVWEELQ 563

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
TAIR|locus:2170209	1141	AT5G06810 "AT5G06810" [Arabido	0.917	0.470	0.443	8.9e-125
TAIR|locus:2133920	575	AT4G19650 "AT4G19650" [Arabido	0.907	0.923	0.374	8.4e-97
TAIR|locus:504954990	414	AT5G45113 "AT5G45113" [Arabido	0.699	0.987	0.334	6.2e-62
TAIR|locus:2103291	558	SHOT1 "AT3G60400" [Arabidopsis	0.849	0.890	0.249	6.4e-44
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.618	0.714	0.217	2.5e-09
TAIR|locus:2037338	445	AT1G74120 "AT1G74120" [Arabido	0.276	0.364	0.251	2.3e-07
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.323	0.319	0.258	7.9e-07
TAIR|locus:2018062	463	AT1G62150 "AT1G62150" [Arabido	0.198	0.250	0.254	1.9e-06
TAIR|locus:2102827	450	AT3G46950 "AT3G46950" [Arabido	0.237	0.308	0.236	2.7e-06
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.328	0.299	0.213	3e-06

TAIR|locus:2170209 AT5G06810 "AT5G06810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 243/548 (44%), Positives = 354/548 (64%)

Query:    42 QNPRLYRTKKIVKPDNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHM 101
             +NPR + T++ +    DA       G  ++  I  + AQ A+ +Y + TR LQFL AE M
Sbjct:   593 RNPRFFATQRALV---DAEVSGEKWGLRTRNEIR-KVAQVAMFDYFYQTRGLQFLVAESM 648

Query:   102 SKNSPYFLEKILNKVGN-----DNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSH 156
             SKN+P F + +L K+       D++++I +AITRF  +HPVNEFEPF ESLGLKP E+SH
Sbjct:   649 SKNAPVFNDNLLKKLNGCDVDVDDDDDIVKAITRFLWFHPVNEFEPFLESLGLKPSEFSH 708

Query:   157 LLPRXXXXXXXXXXXXENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKL 216
             L+P             ENYHV  NYG  R+K+G I+KEA EVF Y+ GVL SK++++E L
Sbjct:   709 LIPCDKMFLNEDAFLLENYHVFWNYGIGREKMGKIFKEAREVFGYETGVLASKIKSYEDL 768

Query:   217 GLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFS 276
             G S+ F+ K+IV +P  L+GD+N+   KV+E+LK++G    W+ E+ +E+ +++W +M  
Sbjct:   769 GFSKLFLSKLIVCSPSILIGDMNVGLAKVMEMLKAIGFGVDWVTENLSEEVSYDWSSMHR 828

Query:   277 FLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQ 336
              LSF   +   E +L  LIR+ P ++FEDSG   L L GF  K G+S +E+  +FQ+FPQ
Sbjct:   829 CLSFLRDLYVDENELCELIRKMPRLIFEDSGEWTLILAGFEAKLGSSRSELSSLFQKFPQ 888

Query:   337 IK-LGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCAXXXXXXXXXXXXVGRKR 395
              + LG+F  NLR C +FL +IEM+  EIG I R H + +G                G+ R
Sbjct:   889 CQSLGKFVLNLRHCFLFLKDIEMDDDEIGKIFRLHSLWIGVSRLKQTSTLLINLKGGKGR 948

Query:   396 LCAIILEDPQEMKKWVMGCRLKPLPRLQLK-EEESDTLKAEFLLEVGFEENSKQFETALK 454
             LC +I E+P+EMKKW+MG R++PLP    K   +S T+K +FLL++G++ENS++ E ALK
Sbjct:   949 LCQVIQENPEEMKKWIMGLRVQPLPATGYKVNTKSKTMKTQFLLDLGYKENSEEMERALK 1008

Query:   455 DLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPIS 514
             + R +  +LRERF+++V  GL  KDV DMV+  P IL Q  ++L++K++Y V + GYP+S
Sbjct:  1009 NFRGKGSELRERFNVLVSFGLTEKDVKDMVKACPSILTQACDILESKVNYLVKELGYPLS 1068

Query:   515 SLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGG 574
             +L  FP  L Y ++ +K R SM++WL+DR   +P L +STI+ CSDK F TR+VNRHP G
Sbjct:  1069 TLVTFPTCLKYTLQRMKLRFSMFSWLQDRGKADPKLQVSTILVCSDKFFATRFVNRHPDG 1128

Query:   575 HQVWQSLK 582
              +  + LK
Sbjct:  1129 PKHLEDLK 1136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2133920 AT4G19650 "AT4G19650" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 202/540 (37%), Positives = 310/540 (57%)

Query:    48 RTKKIVKP-DNDAYCDVSSGGDVSKVPIATREAQAALLEYLHSTRNLQFLDAEHMSKNSP 106
             R  K++    N  YC ++      + P+   +A    +   ++   L +   EH+SKNSP
Sbjct:    40 RVHKLLNMISNLNYC-ITFSSIPRQNPVQRLKAVFVRINLSYNNTRLTY-QLEHISKNSP 97

Query:   107 YFLEKILNKVGNDNEENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPRXXXXXX 166
              F+  +L+K+ +DN++++ + +T+F RY+P+NEFEPFFESLGL P E+   LPR      
Sbjct:    98 CFMSTLLSKI-DDNQKDVSKGLTKFLRYNPINEFEPFFESLGLCPYEFETFLPRKLMFLS 156

Query:   167 XXXXXXENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKV 226
                   EN+H LCNYG  R KIG +YKEA E+FRY+ G+L  KL+ +E LGLS++ V K+
Sbjct:   157 DDGIMFENFHALCNYGIPRGKIGRMYKEAREIFRYESGMLAMKLRGYENLGLSKATVIKL 216

Query:   227 IVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGC 286
             +   P  LVG ++ EF  V++ LK + +   W+G + +++ T++WR +   + F  K+GC
Sbjct:   217 VTSCPLLLVGGIDAEFSSVVDKLKGLQVGCDWLGRYLSDRKTYSWRRILETIEFLDKVGC 276

Query:   287 SEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNL 346
              EE+L  L++ +P ++ E SG     L G L K G  +NEI  +F   P++   +   N+
Sbjct:   277 KEEKLSSLLKTYPALVIEGSGKKFYVLFGRLFKAGLQVNEIYRLFIDNPEMLSDKCVKNI 336

Query:   347 RQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCAXXXXXXXXXXXXVGRKRLCAIILEDPQE 406
             ++ + FL  I ME + I  I+ +H  L+G+C+            V +  LC I+ ++P  
Sbjct:   337 QKTLDFLIAIRMETQFITKILLSHMELIGSCSLPAPRTACLSLNVKQDELCKILKKEPLR 396

Query:   407 MKKWVMGCRL-KPLPRLQLKEEESDTL-KAEFLLEVGFEENSKQFETALKDLRTRARDLR 464
             +  +V   +  K  P   L E+    L K EFLL +G+ ENS +   ALK  R R   L+
Sbjct:   397 LFCFVSTTKKRKSKP---LSEDSRKYLEKTEFLLRLGYVENSDEMVKALKQFRGRGDQLQ 453

Query:   465 ERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLM 524
             ERFD +V+AGL    V +++R AP+IL   K+V++ KI       GYPI SL  FP YL 
Sbjct:   454 ERFDCLVKAGLNYNVVTEIIRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLC 513

Query:   525 YNMKTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKNS 584
             Y+M+ +  R SMY WL++R   +P L+ STI+TC D  FV  +VN HP G  +W+S+  S
Sbjct:   514 YDMQRIHHRFSMYLWLRERDAAKPMLSPSTILTCGDARFVKYFVNVHPEGPAIWESINQS 573

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504954990 AT5G45113 "AT5G45113" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 138/413 (33%), Positives = 229/413 (55%)

Query:   173 ENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPK 232
             EN+HVLC YG  R KIG +YKEA E+F Y+ GVL SKL+ +E L L ++ V K++   P 
Sbjct:     3 ENFHVLCYYGIPRDKIGRLYKEAREIFVYENGVLASKLEPYEILVLRKAIVIKLVTCCPL 62

Query:   233 FLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLR 292
              LVG ++ EF+ V+  LK + +   W+  + + + T+NWR +   +    K+G  E++L 
Sbjct:    63 LLVGGIDCEFVSVVNKLKGLNLGCDWLARYLSVRKTYNWRRILETMELLEKVGFKEKKLS 122

Query:   293 ILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVF 352
              L++ +P+++ E SGN A  +     K G  MNEI  +     ++ L +    + + + F
Sbjct:   123 NLLKAYPDLVGETSGNKAYIMFEKFHKVGLQMNEIDKLLIDNSEMLLEKSVKRILEALKF 182

Query:   353 LNEIEMEAKEIGNIVRTHPVLLGTCAXXXXXXXXXXXXVGRKRLCAIILEDPQEMKKWVM 412
             L  I +E + +   ++ H   + + +            + R  LC II E+P  ++ + +
Sbjct:   183 LKCIRIEKQFVVRFLQCHMKHICSSSLLVPRAVWNRLKIRRDELCQIIKEEP--LRLFSI 240

Query:   413 GCRLKPLPRLQLKEEES-DTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV 471
               +     R++L   +S +  K  FLL++G+ ENS +   ALK  + R  +L+ERFD  V
Sbjct:   241 ASKTNK-GRIELDSLDSRNAEKTTFLLKLGYVENSDEMVRALKKFQGRGDELQERFDCFV 299

Query:   472 EAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVK 531
             +AGL+   V  +V+ AP IL + K++++ KI   ++   YPI S+   P YL Y+MK + 
Sbjct:   300 KAGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLIDYLVYPIESVIESPTYLCYSMKRIH 359

Query:   532 CRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKNS 584
              R +MY WL++R  V P L L T++  S+ L V  +VN HP G   W+++K +
Sbjct:   360 QRFTMYIWLRERDAVIPRLTLGTVVGISNTLIVPYFVNTHPEGPATWENIKKA 412

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103291 SHOT1 "AT3G60400" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 130/521 (24%), Positives = 237/521 (45%)

Query:    74 IATREAQAALLEYLHSTRNLQFLDAEHMSKNSPYFLEKILNKVGNDNEENIGRAITRFFR 133
             +A  +AQ A+ +YLH+TR+L +  AE ++ N+   +  ++ K+ + +     +++ +   
Sbjct:    32 LAIGKAQQAITDYLHTTRSLSYTHAEQIASNASVSIRNLILKL-DFSVPTFSKSLRKHLS 90

Query:   134 YHPVNEFEPFFESLGLKPCEYSHLLPRXXXXXXXXXXXXENYHVLCNYGFARKKIGMIYK 193
             YHP+NEFE FFES+G+   E S  LP             +    L  +GF   K+G +YK
Sbjct:    91 YHPINEFEFFFESIGIDYSEVSEFLPEKKFFFSEDRTVLDAAFALSGFGFPWNKLGKLYK 150

Query:   194 EATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNL-EFIKVLEI-LKS 251
             E   VF    G + S+L  F+ +G S   V    +  P+ L G   L   I+ L + LK 
Sbjct:   151 EERLVFVQRPGEIESRLLKFKDIGFSTVAVIGTCLAIPRTLCGGGELGSEIRCLFVKLKR 210

Query:   252 MGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMAL 311
             +  EF     H  E++  +W  +   +     +GC  E++  L+ ++  +  E S    +
Sbjct:   211 LFDEFD--SHHLFEENVDSWLAVSRKIRIFYDLGCENEEMWELMCRNKSLFLEYSEEALM 268

Query:   312 SLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHP 371
             +  G+  +FG S  +  L+  + P I   +    +      L    +   E+  + + +P
Sbjct:   269 NKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFGLRQDEVDAVAQKYP 328

Query:   372 VLLGTC----------AXXXXXXXXXXXXVGRKRLCA-IILEDPQE--MKKWVMGCRLKP 418
              + G            A             G   L A   L DP E   +++  G  L+ 
Sbjct:   329 YVFGRNQLKNLPYVLRAIDLHERIFDILKNGNHHLLASYTLMDPDEDLEREYQEG--LEE 386

Query:   419 LPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERK 478
             L   + K       K +FL E+GF EN    +  L+ +   A +L +RF +++ +G+   
Sbjct:   387 LQNSRTKRHNIQ--KLDFLHEIGFGENGITMKV-LQHVHGTAVELHDRFQILLNSGIIFS 443

Query:   479 DVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKT-VKCRLSMY 537
              +C ++R AP IL QK   ++ K+ +   + G  +  L+ FP YL ++++  +  R   +
Sbjct:   444 KICMLIRSAPKILNQKPHSIQDKLRFLCGEMGDSLDYLEVFPAYLCFDLENRISPRFRFH 503

Query:   538 NWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVW 578
              WL ++   E + ++++I+  S+K F+ R    HP   + W
Sbjct:   504 KWLVEKGFSEKSYSIASIVATSEKAFIARLYGIHPAIPKHW 544

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 87/400 (21%), Positives = 174/400 (43%)

Query:   178 LCNYGFARKKIGMIYKEATEV-FRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVG 236
             +C+Y    K +G+I  E   +       V+  +++  +KLGL+   + +     P  L  
Sbjct:    86 ICDY---LKGLGIITDELESIELPSTIEVMCERVEFLQKLGLTIDDINEY----PLMLGC 138

Query:   237 DVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLS----FCSKIGCSEEQLR 292
              V    I VL  L+ +GI  S +GE           ++   L+    F   +   ++ L 
Sbjct:   139 SVRKNLIPVLAYLEKIGISRSKLGEFVKNYPQVLHASVVVELAPVVKFLRGLDVEKQDLG 198

Query:   293 ILIRQHPEIL-FEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLG-EFFTNLRQCV 350
              ++ ++PE+L F+  G M+ S V +L+  G S  +I  M  Q+P + LG    T ++  V
Sbjct:   199 YVLMKYPELLGFKLEGTMSTS-VAYLVSIGVSPRDIGPMVTQYPYL-LGMRVGTMIKPLV 256

Query:   351 VFLNEIEMEAKEIGNIVRTHPVLLG-TCAXXXXXXXXXXXXVGRKR--LCAIILEDPQEM 407
              +L  I +  K +  ++     ++G                 G K+  L  +I + PQ  
Sbjct:   257 DYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPNVDCLISFGVKKELLPLLIAQYPQ-- 314

Query:   408 KKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERF 467
                ++G    P+      ++   +LK +   E GF   ++  E   + +  +   + +  
Sbjct:   315 ---ILGL---PVKAKMSTQQYFFSLKLKIDPE-GF---ARVVEKMPQIVSLKQNVIMKPI 364

Query:   468 DLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNM 527
             + ++    + +D+  MV   P IL  + E++K    ++  + G P+  L  +P+Y  Y++
Sbjct:   365 EFLLGRAFQVEDIAKMVVRCPQILCSRVELMKNSYYFYKTEMGRPMKELVEYPEYFTYSL 424

Query:   528 KT-VKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTR 566
             ++ +K R   Y  L+ + +     +L+  + CSD+ F  R
Sbjct:   425 ESRIKPR---YQKLQSKGIRS---SLNWFLNCSDQRFEER 458

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037338 AT1G74120 "AT1G74120" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 44/175 (25%), Positives = 80/175 (45%)

Query:   411 VMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLI 470
             V+G  L  LPR     E  +TLK   ++ V        F            +++ R D +
Sbjct:   245 VLGLELGELPRCL---ELINTLKCREVIRVSIISEGA-FRAGF--------EVKLRVDCL 292

Query:   471 VEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNM-KT 529
              + GL R+D   +V   P ++  + E ++ KI++  N  G+ I+ L   P+YL  N+ K 
Sbjct:   293 CKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEYLGVNLQKQ 352

Query:   530 VKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSLKNS 584
             +  R ++ ++LK +  +   + L  +I  S K F   YV  +P   +++   K +
Sbjct:   353 IVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRFYNLYVMPYPECERIFGKRKEN 407

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
 Identities = 52/201 (25%), Positives = 92/201 (45%)

Query:   173 ENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQA----FEKLGLSQSFVRKVIV 228
             ENY  + ++ ++   + M    A   +    G   S ++     F+KLG+    + KVI 
Sbjct:   334 ENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIP 393

Query:   229 RNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTE-QSTFNW---RTMFSFLSFCSKI 284
             + P+ L+     EF+KV+  L+ +G +   +G+        F     +T+   L F ++ 
Sbjct:   394 KMPQLLLCKPQ-EFLKVVCFLEDLGFQKEIVGQILCRCPEIFGCSIEKTLQKKLIFLTRF 452

Query:   285 GCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFT 344
             G S      +I+++PE L  D+    L  + +L++ G S  EI  M ++F  I LG    
Sbjct:   453 GVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPI-LGYSID 511

Query:   345 N-LRQCVVFL-NEIEMEAKEI 363
               LR    FL N +E   +E+
Sbjct:   512 KVLRPKFEFLVNSMEKPVREV 532

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2018062 AT1G62150 "AT1G62150" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 30/118 (25%), Positives = 57/118 (48%)

Query:   456 LRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISS 515
             LR   + +    +  +  G  R +   MV+  P  +    E++K K ++ V    +P+  
Sbjct:   328 LRASEQQILNSMETFIGLGFSRDEFVMMVKCLPQCIGYSAEMVKKKTEFVVKKMNWPLKV 387

Query:   516 LKPFPQYLMYNM-KTVKCRLSMYNWLKDRKLVEPTLA-LSTIITCSDKLFVTRYVNRH 571
             +  FPQ L Y+M K    R ++   L  + L+   L  +++++ C+D+ F+ RYV  H
Sbjct:   388 ITLFPQVLGYSMEKRTVPRCNVIKALMSKGLLGSELPPMASVLACTDQTFLKRYVVEH 445

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2102827 AT3G46950 "AT3G46950" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
 Identities = 34/144 (23%), Positives = 69/144 (47%)

Query:   430 DTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPL 489
             +TLK   L+E   EE     ++  + +R+  + + +  ++ +  G  R D   MV+  P 
Sbjct:   293 ETLKKCGLVE---EEIISVLKSRPQCIRSSEQKILDSIEMFLGLGFSRDDFKMMVKRYPC 349

Query:   490 ILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNM-KTVKCRLSMYNWLKDRKLV-E 547
                   E L+ K +  V    +P+ ++   P  L Y++ K +  R ++   L  + L+  
Sbjct:   350 CTAYSGETLRKKFEVLVKMMNWPLEAVVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGS 409

Query:   548 PTLALSTIITCSDKLFVTRYVNRH 571
                 +S+++ C+D+ F+ RYV +H
Sbjct:   410 ENPPISSVLVCTDQEFLKRYVMKH 433

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
 Identities = 44/206 (21%), Positives = 88/206 (42%)

Query:   182 GFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLE 241
             G  R  +G +     E+  +    ++S++  F K+G++Q+    ++   PK ++G  + +
Sbjct:   292 GVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPK-IIGFFSFQ 350

Query:   242 FI-KVLEILKSMGIEFSWIGE------HSTEQSTFN-WRTMFSFLSFCSKIGCSEEQLRI 293
              + K +  LK  G+    +G       H    S    W+ +  +  +   +G  +E ++ 
Sbjct:   351 VMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYY---LGIPKEGMKR 407

Query:   294 LIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFL 353
             ++   P +   D        V FL + G     I  M  +FP +     +  +R  V+FL
Sbjct:   408 ILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFL 467

Query:   354 -NEIEMEAKEIGNIVRTHPVLLGTCA 378
                  +  K+IG ++   P LLG C+
Sbjct:   468 LTRAGVTQKDIGKVIAMDPALLG-CS 492

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025362001 SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (907 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	585
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	9e-14
pfam02536	345	pfam02536, mTERF, mTERF	2e-10

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 79/359 (22%), Positives = 148/359 (41%), Gaps = 58/359 (16%)

Query: 214 EKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRT 273
           EKLG+++S + +++ R P+ L   V ++   V++ L+ + ++   I              
Sbjct: 132 EKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIP------------- 178

Query: 274 MFSFLSFCSKIGCSEEQLRILIRQHPEIL-FEDSGNMALSLVGFLLKFGTSMNEICLMFQ 332
                             R+L R +PE+L F+  G M+ S V +L+  G +  +I  M  
Sbjct: 179 ------------------RVLER-YPELLGFKLEGTMSTS-VAYLVSIGVAPRDIGPMLT 218

Query: 333 QFPQIKLG-EFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLG---TCALKKTSSLLTI 388
           +FP+I LG     N++  V +L  + +    +  I+   P +LG      +K     L  
Sbjct: 219 RFPEI-LGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLE 277

Query: 389 LKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQ 448
             V ++ L ++I + P      ++G  LK     Q     S        L++  E+  + 
Sbjct: 278 FGVRKEALPSVIAQYPD-----ILGLDLKAKLAEQQYWLTSK-------LKIDPEDFGRV 325

Query: 449 FETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVND 508
            E   + +        +  + +   G   +DV  MV   P IL    E++K  +++F  +
Sbjct: 326 IEKLPQIVSLNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKE 385

Query: 509 FGYPISSLKPFPQYLMYNMK-TVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTR 566
              P+  L  FP Y  Y ++  +K R   Y  +  + +     +L+  + CSD  F  R
Sbjct: 386 MKRPLKELVEFPAYFTYGLESRIKPR---YERVAKKGI---KCSLAWFLNCSDDKFEQR 438

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 71/345 (20%), Positives = 136/345 (39%), Gaps = 61/345 (17%)

Query: 278 LSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQI 337
           LS    +G ++  +  +IR +P +L  D+       + FL   G S +E+  +    P+I
Sbjct: 1   LSLLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKI 60

Query: 338 KLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCA---LKKTSSLLTILKVGRK 394
              +   ++     FL +I +   +  + +  +P  L         +  S+L  L V  K
Sbjct: 61  LGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPK 120

Query: 395 RLCAIILEDPQ---------EMKKWVMGCRLKPL---------PRLQLKEEESDTLKA-- 434
            L ++++  P+         E  K V+     P          PRL L   +  T+K   
Sbjct: 121 LLFSLLISRPRPVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSD-KTIKPNV 179

Query: 435 EFLLEVGF-------------------EENSKQFETALKD----------------LRTR 459
           EFL  +GF                   E+   Q +  LK                 +   
Sbjct: 180 EFLKSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYS 239

Query: 460 ARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPF 519
            + +  + + ++  G  R+++  MV+  P +L    E +K K ++ V +  +P+  L  F
Sbjct: 240 EQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVEKVKKKTEFLVKEMNWPLKELVEF 299

Query: 520 PQYLMYNM-KTVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLF 563
           PQ   Y++ K +K R ++   L  +       +LS+++ C+D+ F
Sbjct: 300 PQVFGYSLEKRIKPRCNVVKALMSKGKSI-LPSLSSMLKCTDEEF 343

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	585
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.94
KOG1267	413	consensus Mitochondrial transcription termination	99.83
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.06
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.45
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	93.14
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	88.47
cd04790	172	HTH_Cfa-like_unk Helix-Turn-Helix DNA binding doma	86.78

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.4e-62  Score=534.03  Aligned_cols=372  Identities=22%  Similarity=0.371  Sum_probs=309.3

Q ss_pred             hHHHHHhcCCCCCccccC-CcccccCCCchHHHhhHHHHHHhCCCCcchHhHHHhhcccccccch-hhHHHHHHHHHhCC
Q 040691          140 FEPFFESLGLKPCEYSHL-LPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDF-GVLRSKLQAFEKLG  217 (585)
Q Consensus       140 ~~~fleslg~~~~~~~~l-lp~~~~fL~~~~~l~e~~~~L~~~Gi~~~kig~l~~~~~~ll~~~~-~~l~~~l~~L~~lG  217 (585)
                      ...||+|+|++++++..+ +|.++      +.+.+.+.+|.++|++.++|+    ++|.++.++. .++.|+++||+++|
T Consensus        66 ~~~~L~~lgi~~~~l~~~~~p~~~------~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG  135 (487)
T PLN03196         66 VLDFLRGIGIDPDELDGLELPSTV------DVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLG  135 (487)
T ss_pred             HHHHHHHcCCCchhhhccCCCccH------HHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcC
Confidence            347999999999999876 45444      788999999999999999998    5899999986 58999999999999


Q ss_pred             CCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcchhhhhhhcccc---cchh-hhHHHHHHHHhcCCCHHHHHH
Q 040691          218 LSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQST---FNWR-TMFSFLSFCSKIGCSEEQLRI  293 (585)
Q Consensus       218 ls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~~i~~~l~~~p~---~~~~-~l~~~l~fL~~lG~s~~~I~~  293 (585)
                      ++.++|+++|.++|.+|.+|++.++.|+++||+++|++++++++++...|.   ++.. .+.++++||.++|++.++|++
T Consensus       136 ~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~  215 (487)
T PLN03196        136 VTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGP  215 (487)
T ss_pred             CCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999999999999999999999888888877777777777772   3332 466677777777777777777


Q ss_pred             HHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHHHHhhhhchHHHHHHHHhCCcc
Q 040691          294 LIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVL  373 (585)
Q Consensus       294 ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il~~~P~i  373 (585)
                      ++.++|+||++++++++.|+++||.++|++.++|++++.++|++|+++++++++|+++||.++|++++++..++.++|.+
T Consensus       216 il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~i  295 (487)
T PLN03196        216 MLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDI  295 (487)
T ss_pred             HHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCce
Confidence            77777777777777777777777777777777777777777777777777677777777777777777777777777777


Q ss_pred             cccC---cccchHHHH-HHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhH
Q 040691          374 LGTC---ALKKTSSLL-TILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQF  449 (585)
Q Consensus       374 L~~~---~lk~~v~~L-~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~  449 (585)
                      ++.+   ++++.+++| ..+|++.+++..++.++|+++.                                         
T Consensus       296 L~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~-----------------------------------------  334 (487)
T PLN03196        296 LGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVS-----------------------------------------  334 (487)
T ss_pred             eEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhc-----------------------------------------
Confidence            7652   566666666 3577777777777777777662                                         


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcCCCcccccccccccccchh-
Q 040691          450 ETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMK-  528 (585)
Q Consensus       450 ~~al~~~~~~~~~l~~rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l~~fP~~L~ysle-  528 (585)
                              ...++++++++||+++||+.+||+.||+++|++|++|.++|++|++||+++||++.++|++||+||+||+| 
T Consensus       335 --------lSe~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEk  406 (487)
T PLN03196        335 --------LNRNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLES  406 (487)
T ss_pred             --------ccHHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHHhccChhh
Confidence                    11147899999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hHHHhHHHHHHHHHcCCCCCCcccccccccChHHHHHHHhhhCCChhH
Q 040691          529 TVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRYVNRHPGGHQ  576 (585)
Q Consensus       529 rikpR~~~~~~L~~~g~~~~~~sl~~il~~sd~~F~~~~v~~~p~~~~  576 (585)
                      ||+|||++   |+++|+   +++|+++|+|||++|+++|+..|.|+.+
T Consensus       407 RI~PR~~~---L~~kGl---~~sL~~~L~~sd~~F~~r~v~~y~e~~~  448 (487)
T PLN03196        407 RIKPRYER---VAKKGI---KCSLAWFLNCSDDKFEQRMSGDFIEGEE  448 (487)
T ss_pred             hhHHHHHH---HHHcCC---CCCHHHHhccCHHHHHHHHhhhcccccc
Confidence            99999975   889999   7899999999999999999999987543

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=5.1e-50  Score=423.37  Aligned_cols=335  Identities=25%  Similarity=0.427  Sum_probs=205.5

Q ss_pred             HHHHhCCCCcchHhHHHhhcccccccc-hhhHHHHHHHHHhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCC
Q 040691          176 HVLCNYGFARKKIGMIYKEATEVFRYD-FGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGI  254 (585)
Q Consensus       176 ~~L~~~Gi~~~kig~l~~~~~~ll~~~-~~~l~~~l~~L~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl  254 (585)
                      .+|.++|++...|..++++.|.++.++ ...+.++++||.++|++.+++++++.++|.+|..++++++.|++++|+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            356777788888888877777776664 4577888888888888888888888888888888877777777777666666


Q ss_pred             Ccchhhhhhhccc----ccchhhhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHH
Q 040691          255 EFSWIGEHSTEQS----TFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLM  330 (585)
Q Consensus       255 ~~~~i~~~l~~~p----~~~~~~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~v  330 (585)
                      +++++++++...|    ......+.+.+.||+++|++.+.+.+++..+|.++...  +.+.+.++++.++|+++++++++
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~~lG~~~~~~~~v  159 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLKELGFDPEKIGRV  159 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHCCCTSSHHHHCCC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHHHhCCCchhhccc
Confidence            6565555555555    11222455555555555555555555555555544333  45555555555555555555555


Q ss_pred             HhhCCceeecccccchhHHHHHHHhhhhchHHHHHHHHhCCcccccC---cccchHHHHHHhCCChhHHHHHHHhCchhh
Q 040691          331 FQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTC---ALKKTSSLLTILKVGRKRLCAIILEDPQEM  407 (585)
Q Consensus       331 l~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il~~~P~iL~~~---~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L  407 (585)
                      +.++|.++..+.+++++|+++||+++|++.+++.+++.++|++++.+   .+++...++...|...+   .++.++|+++
T Consensus       160 i~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il  236 (345)
T PF02536_consen  160 IAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQIL  236 (345)
T ss_dssp             HHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------
T ss_pred             ccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---cccccccccc
Confidence            55555555555555555555555555555555555555555555542   23333333333333222   4455555544


Q ss_pred             HhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q 040691          408 KKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVA  487 (585)
Q Consensus       408 ~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~~~G~s~~~v~~mI~~~  487 (585)
                                                                       ....++++++++||+++||+.+||++|++++
T Consensus       237 -------------------------------------------------~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~  267 (345)
T PF02536_consen  237 -------------------------------------------------SLSEEKLKPKIEFLQSLGFSEEEIAKMVRRF  267 (345)
T ss_dssp             -------------------------------------------------THHHHHHHHHHHHHHTTT--HHHHHHHHHHS
T ss_pred             -------------------------------------------------ccchHhHHHHHHHHHHhcCcHHHHHHHHHhC
Confidence                                                             2222578999999999999999999999999


Q ss_pred             CcccccCHHHHHHHHHHHHHhcCCCcccccccccccccchh-hHHHhHHHHHHHHHcCCCCCCcccccccccChHHHHH
Q 040691          488 PLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMK-TVKCRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVT  565 (585)
Q Consensus       488 P~iL~~s~e~L~~ki~fL~~~mg~~~~~l~~fP~~L~ysle-rikpR~~~~~~L~~~g~~~~~~sl~~il~~sd~~F~~  565 (585)
                      |+||++|.|+|++|++||+++||++.++|++||+||+||+| ||+|||+++++|+++|. ..++++++|+++||++|++
T Consensus       268 P~iL~~s~e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~-~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  268 PQILSYSIEKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGL-IINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             GGGGGS-HHHHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTT-GGGGGS-HHHHHHHHHHT-
T ss_pred             cchhhcchhhhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcC-CCCCCHHHHhhccHHHhcC
Confidence            99999999999999999999999999999999999999999 99999999999999997 6689999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=3.8e-44  Score=391.12  Aligned_cols=334  Identities=18%  Similarity=0.287  Sum_probs=298.2

Q ss_pred             HHHHHHhCCCCcchHhHHHhhcccccccchhhHHHHHHHHHhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCC
Q 040691          174 NYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMG  253 (585)
Q Consensus       174 ~~~~L~~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~l~~L~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lG  253 (585)
                      .+++|.+.||+..++..+-      +..+.+.++++++||+++|++.++|.    ++|.+|.+++++++.|+++||+++|
T Consensus        66 ~~~~L~~lgi~~~~l~~~~------~p~~~~~~~~~l~~L~s~G~~~~~i~----~~P~iL~~~v~~~l~Pvl~fL~~lG  135 (487)
T PLN03196         66 VLDFLRGIGIDPDELDGLE------LPSTVDVMRERVEFLHKLGLTIEDIN----EYPLVLGCSVKKNMIPVLDYLEKLG  135 (487)
T ss_pred             HHHHHHHcCCCchhhhccC------CCccHHHHHHHHHHHHHcCCChHHhc----cCcHHhhcCHhhhhHHHHHHHHHcC
Confidence            3688999999999987643      34578899999999999999999996    7999999999999999999999999


Q ss_pred             CCcchhhhhhhcccc---cch-hhhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHH
Q 040691          254 IEFSWIGEHSTEQST---FNW-RTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICL  329 (585)
Q Consensus       254 l~~~~i~~~l~~~p~---~~~-~~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~  329 (585)
                      ++..++++++..+|.   .+. .++.++++||+++|++.++|++++.++|++|++++++++.|+++||.++|++.+++++
T Consensus       136 ~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~  215 (487)
T PLN03196        136 VTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGP  215 (487)
T ss_pred             CCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            999999999999993   343 4788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCceeecccccchhHHHHHHHhhhhchHHHHHHHHhCCcccccC---cccchHHHHHHhCCChhHHHHHHHhCchh
Q 040691          330 MFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTC---ALKKTSSLLTILKVGRKRLCAIILEDPQE  406 (585)
Q Consensus       330 vl~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il~~~P~iL~~~---~lk~~v~~L~~lGl~~~~l~~ii~~~P~~  406 (585)
                      ++.++|++|+++++++++|+++||+++|++.++|++++.++|++|+++   +++|++++|.++|++++.++.+|..+|.+
T Consensus       216 il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~i  295 (487)
T PLN03196        216 MLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDI  295 (487)
T ss_pred             HHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCce
Confidence            999999999999999999999999999999999999999999999984   89999999999999999999999999998


Q ss_pred             hHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH-HcCCCHHHHHHHHH
Q 040691          407 MKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV-EAGLERKDVCDMVR  485 (585)
Q Consensus       407 L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~-~~G~s~~~v~~mI~  485 (585)
                      +.     .+              +                             .+++.++++|+. ++|++.+++..+|.
T Consensus       296 L~-----~s--------------~-----------------------------e~kl~~~~~fL~~~lG~s~e~i~~~v~  327 (487)
T PLN03196        296 LG-----LD--------------L-----------------------------KAKLAEQQYWLTSKLKIDPEDFGRVIE  327 (487)
T ss_pred             eE-----ec--------------H-----------------------------HHhhhHHHHHHHHhhCCCHHHHHHHHH
Confidence            83     10              0                             135788888997 99999999999999


Q ss_pred             hcCcccccCHHHHHHHHHHHHHhcCCCcccc----cccccccccchhhHHHhHHHHHHHHHcCCCCCCc-ccccccccC-
Q 040691          486 VAPLILKQKKEVLKTKIDYFVNDFGYPISSL----KPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTL-ALSTIITCS-  559 (585)
Q Consensus       486 ~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l----~~fP~~L~yslerikpR~~~~~~L~~~g~~~~~~-sl~~il~~s-  559 (585)
                      ++|+++++|.+++++|++||.+ +|++.+++    .++|++|+||.+.|++++.++  ..+.|.-...+ ...+++++| 
T Consensus       328 k~P~il~lSe~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFl--vneMg~~~~~Iv~fP~~LsySL  404 (487)
T PLN03196        328 KLPQIVSLNRNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEIMKPSLEFF--KKEMKRPLKELVEFPAYFTYGL  404 (487)
T ss_pred             hcchhhcccHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHHHHHHHHHH--HHHhCCCHHHHHhChHHhccCh
Confidence            9999999999999999999997 99999987    699999999999999999863  33455522222 466778877 


Q ss_pred             hHHHHHHHh
Q 040691          560 DKLFVTRYV  568 (585)
Q Consensus       560 d~~F~~~~v  568 (585)
                      |++-.-||-
T Consensus       405 EkRI~PR~~  413 (487)
T PLN03196        405 ESRIKPRYE  413 (487)
T ss_pred             hhhhHHHHH
Confidence            456666653

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.2e-35  Score=310.53  Aligned_cols=313  Identities=20%  Similarity=0.337  Sum_probs=234.8

Q ss_pred             HHHHHhcCCCCCccccCCcc--cccCCCchHHHhhHHHHHHhCCCCcchHhHHHhhcccccccc-hhhHHHHHHHHHhCC
Q 040691          141 EPFFESLGLKPCEYSHLLPR--DLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYD-FGVLRSKLQAFEKLG  217 (585)
Q Consensus       141 ~~fleslg~~~~~~~~llp~--~~~fL~~~~~l~e~~~~L~~~Gi~~~kig~l~~~~~~ll~~~-~~~l~~~l~~L~~lG  217 (585)
                      |.+|++.|+...++..+..+  .....+.+..+...+.+|++.|++..++++++..+|+++..+ ...+.+.++||+++|
T Consensus         1 ~~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~   80 (345)
T PF02536_consen    1 EDLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIG   80 (345)
T ss_dssp             -HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTS
T ss_pred             ChHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHc
Confidence            46899999999999888543  233445777889999999999999999999999999999999 789999999999999


Q ss_pred             CCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcchhhhhhhcccc--cchhhhHHHHHHHHhcCCCHHHHHHHH
Q 040691          218 LSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQST--FNWRTMFSFLSFCSKIGCSEEQLRILI  295 (585)
Q Consensus       218 ls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~~i~~~l~~~p~--~~~~~l~~~l~fL~~lG~s~~~I~~ii  295 (585)
                      ++++++.+++.++|++|..+.+.++.+.+++|+++|++.+.+.+.+...|.  .....+.+.++++.++|++++++.+++
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi  160 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVI  160 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccc
Confidence            999999999999999999988888999999999999999978777777662  223788899999999999999999999


Q ss_pred             HhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHHHHhhhhchHHHHHHHHhCCcccc
Q 040691          296 RQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLG  375 (585)
Q Consensus       296 ~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il~~~P~iL~  375 (585)
                      .++|+++..+.+++++|+++||+++|++.+++++++.++|.+++.+.++.+.+...++...|...+   .++.++|.+++
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~---~~i~~~p~il~  237 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEE---RVIKKFPQILS  237 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC------------------------------T
T ss_pred             cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceeccccccccccccccccccccccc---ccccccccccc
Confidence            999999999999999999999999999999999999999999999999777766666666555555   88999999998


Q ss_pred             c--CcccchHHHHHHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHH
Q 040691          376 T--CALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETAL  453 (585)
Q Consensus       376 ~--~~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al  453 (585)
                      +  +++++++++|.++|++.+++++|+.++|++|..                +                           
T Consensus       238 ~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~----------------s---------------------------  274 (345)
T PF02536_consen  238 LSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSY----------------S---------------------------  274 (345)
T ss_dssp             HHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS--------------------------------------------
T ss_pred             cchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhc----------------c---------------------------
Confidence            7  479999999999999999999999999999931                1                           


Q ss_pred             HHHhhccHHHHHHHHHHH-HcCCCHHHHHHHHHhcCcccccCHH-HHHHH---HHHHHHhcC
Q 040691          454 KDLRTRARDLRERFDLIV-EAGLERKDVCDMVRVAPLILKQKKE-VLKTK---IDYFVNDFG  510 (585)
Q Consensus       454 ~~~~~~~~~l~~rv~fL~-~~G~s~~~v~~mI~~~P~iL~~s~e-~L~~k---i~fL~~~mg  510 (585)
                            .+.++++++||. ++|++.++|.    ++|++|+||.| +|+|+   +++|.+ .|
T Consensus       275 ------~e~l~~k~~fl~~~m~~~~~~i~----~~P~~l~~sLe~ri~PR~~~~~~l~~-~g  325 (345)
T PF02536_consen  275 ------IEKLKPKFEFLVKEMGLPLEEIV----EFPQYLSYSLEKRIKPRYEVLKVLKS-KG  325 (345)
T ss_dssp             ------HHHHHHHHHHHHHCCT--HHHHH----HSCHHHCS-HHHHHHHHHHHHHTT---TT
T ss_pred             ------hhhhhHHHHHHHHHhCcCHHHHh----hCCceeEechhhhhhhHHHHHHHHHH-Cc
Confidence                  146899999999 8999998874    89999999999 79999   666555 35

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=250.03  Aligned_cols=326  Identities=22%  Similarity=0.355  Sum_probs=236.4

Q ss_pred             chhHHHHHHHHhhhCCCcchHHHHHhcCCCCCccccCCcc--cccCCCchHHHhhHHHHHHhCCCCcchHhHHHhhcccc
Q 040691          121 EENIGRAITRFFRYHPVNEFEPFFESLGLKPCEYSHLLPR--DLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEV  198 (585)
Q Consensus       121 ~~~~~~~~~r~l~~~~i~e~~~fleslg~~~~~~~~llp~--~~~fL~~~~~l~e~~~~L~~~Gi~~~kig~l~~~~~~l  198 (585)
                      ....++.+.-...++|...+. +|+|+|++..+++.+.+.  ...++++..                             
T Consensus        76 ~~~~~~~~~~~~~~~p~s~~~-~l~s~g~~~~~i~s~i~~~p~ll~~~~~~-----------------------------  125 (413)
T KOG1267|consen   76 ARKLSREVSSEDSVNPSSVLS-SLRSLGFTDSQISSIILSSPKLLYLSSEN-----------------------------  125 (413)
T ss_pred             HHHHHHHHHhhhccCcHHHHH-HHHhcCCchhhcccccccCchhhhccchh-----------------------------
Confidence            334456667777778888877 999999999999887543  222333333                             


Q ss_pred             cccchhhHHHHHHHHHhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCC--CCcchhhhhhhccc--ccchhhh
Q 040691          199 FRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMG--IEFSWIGEHSTEQS--TFNWRTM  274 (585)
Q Consensus       199 l~~~~~~l~~~l~~L~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lG--l~~~~i~~~l~~~p--~~~~~~l  274 (585)
                            .+.+++.++...|++...+.+++...|.+|...-+..+.+.+++|++++  .....+.+++...|  ...|..+
T Consensus       126 ------~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v  199 (413)
T KOG1267|consen  126 ------ILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNENSV  199 (413)
T ss_pred             ------hhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHHhhccchhhhhhHHHHhcccccccccccccc
Confidence                  3344444445555555555555555555555444444555555555542  44444555555545  3444455


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHHHH
Q 040691          275 FSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLN  354 (585)
Q Consensus       275 ~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~  354 (585)
                      . .+++++++|....++...+..+|.++....  .+...+.++..+|+.+..  +++.++|.++.++.++.++|++++|+
T Consensus       200 ~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~  274 (413)
T KOG1267|consen  200 E-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLK  274 (413)
T ss_pred             c-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHH
Confidence            4 677788888888888888888888776543  677777788888876665  77888888888888888888888888


Q ss_pred             hhhhchHHHHHHHHhCCcccccC--cccchHHHHHHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHH
Q 040691          355 EIEMEAKEIGNIVRTHPVLLGTC--ALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTL  432 (585)
Q Consensus       355 ~lG~~~~~I~~il~~~P~iL~~~--~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~  432 (585)
                      ++|++.+||.+++.++|++++++  ....+.+++.+.  .++     +.++|+++.                        
T Consensus       275 ~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~--~~~-----~~k~p~~l~------------------------  323 (413)
T KOG1267|consen  275 SLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKN--PKH-----ILKFPQLLR------------------------  323 (413)
T ss_pred             HcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhc--chh-----hhhhhhhhh------------------------
Confidence            88888888888888888888774  334445555444  222     667777762                        


Q ss_pred             HHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcccccCHH-HHHHHHHHHHHhcCC
Q 040691          433 KAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKE-VLKTKIDYFVNDFGY  511 (585)
Q Consensus       433 k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e-~L~~ki~fL~~~mg~  511 (585)
                                               .....++++++|+...|++..++..|++++|+++++|.+ .++.+.+|+.+.|++
T Consensus       324 -------------------------~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~  378 (413)
T KOG1267|consen  324 -------------------------SSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLR  378 (413)
T ss_pred             -------------------------ccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCc
Confidence                                     112478999999999999999999999999999999999 999999999999999


Q ss_pred             Ccccccccccccccchh-hHHHhHHHHHHHHHc
Q 040691          512 PISSLKPFPQYLMYNMK-TVKCRLSMYNWLKDR  543 (585)
Q Consensus       512 ~~~~l~~fP~~L~ysle-rikpR~~~~~~L~~~  543 (585)
                      +.+.++.+|++++|++| |++||+.++.++..+
T Consensus       379 p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~~  411 (413)
T KOG1267|consen  379 PLSALVSFPAFFGYSLEKRIRPRFNVIKKLGVK  411 (413)
T ss_pred             hHHHHhccchhhccchhhcchhHHHHHHHHhcc
Confidence            99999999999999999 999999988777654

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.83  E-value=3.4e-20  Score=200.67  Aligned_cols=250  Identities=20%  Similarity=0.303  Sum_probs=219.2

Q ss_pred             hhhhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHH
Q 040691          271 WRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCV  350 (585)
Q Consensus       271 ~~~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v  350 (585)
                      ..+...++++|++.|+++.+|.+++..+|.++..+.++.+.|+..+|...|.+...+++++...|.+|+.+.+.++.+.+
T Consensus        88 ~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~  167 (413)
T KOG1267|consen   88 SVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFI  167 (413)
T ss_pred             ccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHHhhh--hchHHHHHHHHhCCccccc-CcccchHHHHHHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCccccccc
Q 040691          351 VFLNEIE--MEAKEIGNIVRTHPVLLGT-CALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEE  427 (585)
Q Consensus       351 ~fL~~lG--~~~~~I~~il~~~P~iL~~-~~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~  427 (585)
                      +||++++  .....+.+++...|..... ..++ ++++++.+|..+..+..++..+|+...                 ..
T Consensus       168 ~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~-----------------~~  229 (413)
T KOG1267|consen  168 EFLKSIPPELLSSVVERLLTPVPSFLLNENSVE-RLDIRRELGVKPRLLKSLLESQPRPVL-----------------LY  229 (413)
T ss_pred             HHhhccchhhhhhHHHHhccccccccccccccc-cchhhHHhCCCHHHHHHHHhcCcccee-----------------ee
Confidence            9999985  6677777777666644433 4566 899999999999999999999999873                 12


Q ss_pred             chhHHHHHHHHHhCCCcchhhHHHHHHHHhhccH-HHHHHHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Q 040691          428 ESDTLKAEFLLEVGFEENSKQFETALKDLRTRAR-DLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFV  506 (585)
Q Consensus       428 ~~~~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~-~l~~rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~  506 (585)
                      ..+..++.++..+||++.+.++++|+..+.+.++ ++++++++|.+.||+.+||+.|++++|++|++|.+.+..+++|+.
T Consensus       230 ~~l~~~~~~i~~~g~~p~~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~  309 (413)
T KOG1267|consen  230 LKLKARLPFLLTLGFDPKTREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLL  309 (413)
T ss_pred             hhhhhhhhhHHHhccCCchhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHH
Confidence            2677888999999999999999999999988775 999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcccccccccccccchhhHHHhHHHHHHHHHcCC
Q 040691          507 NDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKL  545 (585)
Q Consensus       507 ~~mg~~~~~l~~fP~~L~yslerikpR~~~~~~L~~~g~  545 (585)
                      +.    .+++.++|++++++...+.+|+.+   +...|.
T Consensus       310 ~~----~~~~~k~p~~l~~s~~~l~~~ie~---l~~~g~  341 (413)
T KOG1267|consen  310 KN----PKHILKFPQLLRSSEDKLKPRIEF---LLSLGF  341 (413)
T ss_pred             hc----chhhhhhhhhhhccchhhhhhHHH---HHHcCC
Confidence            86    333899999998888899999864   666665

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.06  E-value=0.00052  Score=45.22  Aligned_cols=30  Identities=23%  Similarity=0.600  Sum_probs=27.0

Q ss_pred             HHHHhcCcccccCHHHHHHHHHHHHHhcCCC
Q 040691          482 DMVRVAPLILKQKKEVLKTKIDYFVNDFGYP  512 (585)
Q Consensus       482 ~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~  512 (585)
                      .+|.++|.+|+++.+.++++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSEKKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccHHHhhHHHHHHH-HcCCC
Confidence            5789999999999779999999999 68874

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.45  E-value=0.002  Score=42.26  Aligned_cols=29  Identities=24%  Similarity=0.348  Sum_probs=17.6

Q ss_pred             HHHHhCCcccccCccccHHHHHHHHHhcCC
Q 040691          293 ILIRQHPEILFEDSGNMALSLVGFLLKFGT  322 (585)
Q Consensus       293 ~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~  322 (585)
                      +++.++|.+|+.+ ++++.|+++||+++|+
T Consensus         2 ~~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        2 KILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             chhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            3456666666655 5566666666666654

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=93.14  E-value=0.36  Score=50.93  Aligned_cols=238  Identities=14%  Similarity=0.092  Sum_probs=135.4

Q ss_pred             HhcCCCHHHHHHHHHhCCcccccCcc-c------cHHHHHHHHHh--cCCChhHHHHHHhhCCceeecccccchh-HHHH
Q 040691          282 SKIGCSEEQLRILIRQHPEILFEDSG-N------MALSLVGFLLK--FGTSMNEICLMFQQFPQIKLGEFFTNLR-QCVV  351 (585)
Q Consensus       282 ~~lG~s~~~I~~ii~~~P~lL~~~~e-~------~L~p~v~fL~~--lG~~~~~i~~vl~~~P~lL~~s~e~~l~-p~v~  351 (585)
                      ..+|+..-.+...+.++|.|+..... .      .+.|...-|.+  ..+-.+.-..++.+--.+|.++.++.|. .++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            34688768889999999999875431 1      13333333321  1111111133344444577777776543 4566


Q ss_pred             HH-HhhhhchHHHHHHHHhCCcccccCcccc------hHHHHHHhCCChhHHHHHH-------------HhCchhhHhhh
Q 040691          352 FL-NEIEMEAKEIGNIVRTHPVLLGTCALKK------TSSLLTILKVGRKRLCAII-------------LEDPQEMKKWV  411 (585)
Q Consensus       352 fL-~~lG~~~~~I~~il~~~P~iL~~~~lk~------~v~~L~~lGl~~~~l~~ii-------------~~~P~~L~~~~  411 (585)
                      .+ .++|++.+-...++.+||..|.-.....      .+.+=.++.++.-+.....             -.+|--+   -
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~f---p  201 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSF---P  201 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecC---C
Confidence            66 5899999999999999999986411011      1111112333222221111             0112111   1


Q ss_pred             hccCCCCCCcccccccchhHHHHHHHHHhCCC----------cchhhHH-HHHHHHhh---cc-H--HHHHHHHHHH-Hc
Q 040691          412 MGCRLKPLPRLQLKEEESDTLKAEFLLEVGFE----------ENSKQFE-TALKDLRT---RA-R--DLRERFDLIV-EA  473 (585)
Q Consensus       412 ~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~----------e~~~~~~-~al~~~~~---~~-~--~l~~rv~fL~-~~  473 (585)
                      -|.          .-.....++++-.+++-|.          +++.++. +|+.+++-   +. +  ...+++..|+ ++
T Consensus       202 ~G~----------~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef  271 (335)
T PF11955_consen  202 KGF----------RLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEF  271 (335)
T ss_pred             CCc----------cccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHh
Confidence            122          1234556677777766554          3455553 77776653   11 2  5677888899 99


Q ss_pred             CCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcCCCcccc-cccccccccchhhHHHhHHHHHHHHHcCC
Q 040691          474 GLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSL-KPFPQYLMYNMKTVKCRLSMYNWLKDRKL  545 (585)
Q Consensus       474 G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l-~~fP~~L~yslerikpR~~~~~~L~~~g~  545 (585)
                      |++. .+..|+.++|.|+..|... ..-.-||.+  +|...++ .++|.+      .++-||.   -|+..|.
T Consensus       272 ~lp~-k~~~~l~rHPgIFYvS~kg-~~~TVfLrE--AY~~~~Liek~Pl~------~~r~k~~---~Lm~~~~  331 (335)
T PF11955_consen  272 GLPQ-KFRRLLLRHPGIFYVSLKG-KRHTVFLRE--AYDGGELIEKHPLV------VIREKFL---ELMQEGR  331 (335)
T ss_pred             CCcH-HHHHHHHhCCCeEEEeccC-CceEEEEee--ccCCCCCCCCCchH------HHHHHHH---HHHhhcc
Confidence            9995 6899999999999998762 112234555  5555554 467754      6776664   3666554

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=88.47  E-value=3.9  Score=39.03  Aligned_cols=144  Identities=16%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             HHHHhcCCCCCccccCCcccccCCCchH-HHhhHHHHHHhCCCCcchHhHHHhhcccccccchhhHHHHHHHHH----hC
Q 040691          142 PFFESLGLKPCEYSHLLPRDLIFLNDDD-LLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFE----KL  216 (585)
Q Consensus       142 ~fleslg~~~~~~~~llp~~~~fL~~~~-~l~e~~~~L~~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~l~~L~----~l  216 (585)
                      .|.+..|+-+....  -+.+-.+.++++ .-+.....|.+.|++-+.|..++.....   .-...+..+++.+.    .+
T Consensus        19 RyYe~~GLl~p~~r--~~~gyR~Y~~~dl~rL~~I~~lr~~G~sL~eI~~ll~~~~~---~~~~~L~~~~~~l~~ei~~L   93 (172)
T cd04790          19 LYYERIGLLSPSAR--SESNYRLYGERDLERLEQICAYRSAGVSLEDIRSLLQQPGD---DATDVLRRRLAELNREIQRL   93 (172)
T ss_pred             HHHHHCCCCCCCcc--CCCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCh---hHHHHHHHHHHHHHHHHHHH
Confidence            46777777643211  122333334332 2356667788888888888887643221   00112333333222    12


Q ss_pred             CCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcchhhhhhhcccccchhhhHHHHHHHHhcCCCHHHHHHH
Q 040691          217 GLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRIL  294 (585)
Q Consensus       217 Gls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~~i~~~l~~~p~~~~~~l~~~l~fL~~lG~s~~~I~~i  294 (585)
                      --....+..++...+.. ...-..+....++-++..|++++++.+.=..+   .-..+....+||.++|++.+++..|
T Consensus        94 ~~~~~~l~~ll~~~~~~-~~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~f---e~~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790          94 RQQQRAIATLLKQPTLL-KEQRLVTKEKWVAILKAAGMDEADMRRWHIEF---EKMEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHHHHHHHHHHHhhc-cccccCCHHHHHHHHHHcCCChHHHHHHHHHH---HHhCcHHHHHHHHHcCCCHHHHHHH
Confidence            22223344444333332 11111123344555566676666543221111   1112344567777777777766554

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators

Probab=86.78  E-value=7.8  Score=36.95  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHh----cCCChhHHHHHHhhCCceeecccccchhHHHH
Q 040691          276 SFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLK----FGTSMNEICLMFQQFPQIKLGEFFTNLRQCVV  351 (585)
Q Consensus       276 ~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~----lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~  351 (585)
                      ..+..|+++|++-++|..++.....-    ....+..+++.+..    +--....+..++...+..-.-... +....++
T Consensus        49 ~~I~~lr~~G~sL~eI~~ll~~~~~~----~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll~~~~~~~~~~~V-~~~~w~~  123 (172)
T cd04790          49 EQICAYRSAGVSLEDIRSLLQQPGDD----ATDVLRRRLAELNREIQRLRQQQRAIATLLKQPTLLKEQRLV-TKEKWVA  123 (172)
T ss_pred             HHHHHHHHcCCCHHHHHHHHhcCChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-CHHHHHH
Confidence            45777888999999999988765431    11123333333221    111233444444433333111111 2344566


Q ss_pred             HHHhhhhchHHHHHHHHhCCcccccCcccch--HHHHHHhCCChhHHHHH
Q 040691          352 FLNEIEMEAKEIGNIVRTHPVLLGTCALKKT--SSLLTILKVGRKRLCAI  399 (585)
Q Consensus       352 fL~~lG~~~~~I~~il~~~P~iL~~~~lk~~--v~~L~~lGl~~~~l~~i  399 (585)
                      .++.+|+++++..+.=..      +.+..|-  .+||..+|++.+++..+
T Consensus       124 l~~~~g~~~~~m~~wh~~------fe~~~p~~h~~~l~~~g~~~~~~~~i  167 (172)
T cd04790         124 ILKAAGMDEADMRRWHIE------FEKMEPEAHQEFLQSLGIPEDEIERI  167 (172)
T ss_pred             HHHHcCCChHHHHHHHHH------HHHhCcHHHHHHHHHcCCCHHHHHHH
Confidence            678899998886544221      1344553  48999999998887654

Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	585
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-33
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	3e-15
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	1e-11
3mva_O	343	Transcription termination factor, mitochondrial; a	5e-26
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  128 bits (322), Expect = 2e-33
 Identities = 38/270 (14%), Positives = 95/270 (35%), Gaps = 25/270 (9%)

Query: 312 SLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHP 371
             +  L+  G  +++I    +    +   +F  +++Q ++FL ++ +E  ++G  +  + 
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 372 VLLGT--CALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEES 429
            +       LK   + L      +  +  ++ + P     +++   ++ L          
Sbjct: 67  AIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAP-----FLLNFSVERLDN-------- 113

Query: 430 DTLKAEFL---LEVGFEENSKQFETALKDLRTRARDLRERFDLIVEA-GLERKDVCDMVR 485
              +  F    LE+  ++         + L      ++E   +     G +  ++  M+ 
Sbjct: 114 ---RLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMIT 170

Query: 486 VAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKL 545
             P +L   K  L    D+  N    P   +  FPQ     +  VK R     +L   + 
Sbjct: 171 RIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQY 230

Query: 546 ---VEPTLALSTIITCSDKLFVTRYVNRHP 572
                  ++L  +++  D++F         
Sbjct: 231 DPAKPNYISLDKLVSIPDEIFCEEIAKASV 260

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 3/177 (1%)

Query: 202 DFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGE 261
           D+      LQ    LG+  S + K        L  D   +  ++L  LK +GIE + +G 
Sbjct: 1   DYVDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGA 60

Query: 262 HSTEQS---TFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLL 318
             T+     + +   + + +++      S+  +  ++R+ P +L      +   L  F  
Sbjct: 61  FLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQK 120

Query: 319 KFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLG 375
           +   S+ +   +  + P++  G          V+  E+  +  EI +++   P +L 
Sbjct: 121 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT 177

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 40/236 (16%)

Query: 143 FFESLGLKPCEYSHLLPRD--LIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFR 200
               LG+   +          L+ L+ +  + +    L + G    ++G    +   +F 
Sbjct: 11  KLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFS 70

Query: 201 YDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIG 260
            D   L++++        S++ V +++ + P  L                          
Sbjct: 71  EDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLL-------------------------- 104

Query: 261 EHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKF 320
                 S         F  F  ++  S ++ R L+ + P +L      +  ++  + L+ 
Sbjct: 105 ----NFSVERLDNRLGF--FQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLEL 158

Query: 321 GTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFL-NEIEMEAKEIGNIVRTHPVLLG 375
           G   NEI  M  + P++ L      L +   F+ N + +    I       P +  
Sbjct: 159 GFKHNEIQHMITRIPKM-LTANKMKLTETFDFVHNVMSIPHHII----VKFPQVFN 209

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  108 bits (271), Expect = 5e-26
 Identities = 52/336 (15%), Positives = 109/336 (32%), Gaps = 23/336 (6%)

Query: 241 EFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPE 300
           +   +L+ L +MG++     +                  F    G S+E +  +I ++P 
Sbjct: 18  KNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPR 77

Query: 301 ILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGE-FFTNLRQCVVFLNEIEME 359
            +     N++        K  TS  EI  + ++ P+         NL   + FL  + + 
Sbjct: 78  AITRTPENLS-KRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLT 136

Query: 360 AKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPL 419
            K +  ++   P             +  +   G        L          +   +   
Sbjct: 137 RKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAG--------LSLGHNDPADFVRKIIFKN 188

Query: 420 PRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKD----LRTRARDLRERFDLIVEA-- 473
           P + ++  +      EFL       + +            L       R  +  I E   
Sbjct: 189 PFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLF 248

Query: 474 --GLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVK 531
             G   ++V   V   P ++   ++    KID  + +    IS +   P+ L  ++ T+K
Sbjct: 249 SLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEE-NISISQIIENPRVLDSSISTLK 307

Query: 532 CRLSMYNWLKDRKLVEPTLALSTIITCSDKLFVTRY 567
            R      L +      TL ++ +++ S K +  + 
Sbjct: 308 SR---IKELVNAGCNLSTLNIT-LLSWSKKRYEAKL 339

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 16/257 (6%)

Query: 133 RYHPVNEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIY 192
                 +      ++G+         P   +F        +    L + G +++ I  I 
Sbjct: 15  EPLKNEDLLKNLLTMGVDIDMARKRQPG--VFHRMITNEQDLKMFLLSKGASKEVIASII 72

Query: 193 KEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPK-FLVGDVNLEFIKVLEILKS 251
                        L  +   + K+  S   +  ++ R+P+ F   + NL     ++ L S
Sbjct: 73  SRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYS 132

Query: 252 MGIEFSWIGEHST------EQSTFNWRTMFSFLS---FCSKIGCSEEQLRILIRQHPEIL 302
           +G+    +    T        S    + M  FL             + +R +I ++P IL
Sbjct: 133 VGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFIL 192

Query: 303 FEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNE----IEM 358
            + +  +  ++      F  +  E+ ++        L       R+    + E    +  
Sbjct: 193 IQSTKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252

Query: 359 EAKEIGNIVRTHPVLLG 375
             +E+   V ++P ++ 
Sbjct: 253 TEEEVQKFVLSYPDVIF 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.6 bits (164), Expect = 7e-12
 Identities = 73/629 (11%), Positives = 188/629 (29%), Gaps = 215/629 (34%)

Query: 47  YRTKKIV-------KPDNDAYCDVSSGGDVSKVPIATREAQAALLE--YLHSTRNL---- 93
           Y+ K I+         + D   DV    D+ K  ++  E    ++    +  T  L    
Sbjct: 16  YQYKDILSVFEDAFVDNFDCK-DVQ---DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 94  ---------QFLDAEHMSKNSPYFLEKI-----------------LNKVGNDNEENIGRA 127
                    +F++ E +  N  + +  I                  +++ NDN+      
Sbjct: 72  LSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ------ 124

Query: 128 ITRFFRYHPVNEFEPFFES----LGLKPCEY-----------SHL---LPRDL------- 162
              F +Y+ V+  +P+ +     L L+P +            + +   +           
Sbjct: 125 --VFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 163 --IF------LNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFE 214
             IF       N  + +LE    L    +          + +   +     ++++L+   
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELR--- 235

Query: 215 KLGLSQSFVRKVI----VRNPK----FLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQ 266
           +L  S+ +   ++    V+N K    F +        K+L   +   +        +T  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLS------CKILLTTRFKQVTDFLSAATTTHI 289

Query: 267 STFNWRTMFS---FLSFCSK-IGCSEEQLRILIRQ-HPEILFEDSGNMALSLVGFLLKFG 321
           S  +     +     S   K + C  + L   +   +P           LS++   ++  
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---------RRLSIIAESIR-- 338

Query: 322 TSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKK 381
              + +   +  +  +   +  T +   +  L   E                      +K
Sbjct: 339 ---DGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEY---------------------RK 373

Query: 382 TSSLLTIL----KVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEF- 436
               L++      +    L   ++        W             + + +   +  +  
Sbjct: 374 MFDRLSVFPPSAHIPTILLS--LI--------W-----------FDVIKSDVMVVVNKLH 412

Query: 437 ---LLEVGFEENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQ 493
              L+E    +  K+   ++  +     +L+ + +   E  L R            I+  
Sbjct: 413 KYSLVE----KQPKESTISIPSI---YLELKVKLEN--EYALHRS-----------IVDH 452

Query: 494 KKEVLKTKIDYFV--NDFGYPISSLKPFPQYLMYNMKTVKC--RLSM-------YNWLKD 542
                    D  +      Y       F  ++ +++K ++   R+++       + +L+ 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY-------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE- 504

Query: 543 RKLVEPTLALSTIITCSDKLFVTRYVNRH 571
           +K+   + A +   +  + L   ++   +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPY 533

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 27/150 (18%)

Query: 449 FETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTK-IDYFVN 507
           FET     + +  D+   F+       + KDV DM +           +L  + ID+ + 
Sbjct: 9   FETGEHQYQYK--DILSVFEDAFVDNFDCKDVQDMPK----------SILSKEEIDHIIM 56

Query: 508 DFGYPISSLKPFPQYLMYNMKTVKCRLSM-----YNWLKDR---KLVEPTLALSTIITCS 559
                  +L+ F   L    + V+  +       Y +L      +  +P++     I   
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 560 DKL------FVTRYVNRHPGGHQVWQSLKN 583
           D+L      F    V+R     ++ Q+L  
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 16/79 (20%)

Query: 402 EDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFL------LEVGFEENSKQFETALKD 455
           ++P+ ++KW    R +   RLQ  +  S  ++ E+       LE   +  S+Q E     
Sbjct: 82  QEPESIRKW----REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI- 136

Query: 456 LRTRARD---LRER-FDLI 470
              R  D    ++   D+I
Sbjct: 137 -NNRIADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	585
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.97
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.9
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.2
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	97.93
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	93.38
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	87.8
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	86.7
3ff5_A	54	PEX14P, peroxisomal biogenesis factor 14; protein	84.72
4hpz_A	463	Dtale2; DNA binding protein, N-terminal domain; 2.	83.71
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	82.54
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	80.27

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.9e-46  Score=394.43  Aligned_cols=305  Identities=19%  Similarity=0.243  Sum_probs=266.0

Q ss_pred             HHHHHHhCCCCcchHhHHHhhcccccccchhhHHHHHHHHHhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCC
Q 040691          174 NYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMG  253 (585)
Q Consensus       174 ~~~~L~~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~l~~L~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lG  253 (585)
                      .+.+|.++|++.+++   .+.+|.++..+++..+++++||.++|+++++|++++.++|.+|.++++ ++.|++       
T Consensus        22 ~v~~L~s~Gl~~~~~---~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l-------   90 (343)
T 3mva_O           22 LLKNLLTMGVDIDMA---RKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRW-------   90 (343)
T ss_dssp             HHHHHHHHTCCHHHH---HHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHH-------
T ss_pred             HHHHHHHcCCCHHHH---HHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHH-------
Confidence            478899999986654   556788888888889999999999999999999999999999999964 566554       


Q ss_pred             CCcchhhhhhhcccccchhhhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCcc-ccHHHHHHHHHhcCCChhHHHHHHh
Q 040691          254 IEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSG-NMALSLVGFLLKFGTSMNEICLMFQ  332 (585)
Q Consensus       254 l~~~~i~~~l~~~p~~~~~~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e-~~L~p~v~fL~~lG~~~~~i~~vl~  332 (585)
                                               +||+++|++++++++++.++|++|..+.+ +++.|+++||+++|++.++|++++.
T Consensus        91 -------------------------~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~  145 (343)
T 3mva_O           91 -------------------------DLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLT  145 (343)
T ss_dssp             -------------------------HHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             -------------------------HHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHH
Confidence                                     56667788999999999999996555666 4899999999999999999999999


Q ss_pred             hCCceeecccccchhHHHHHHHhhhhc------hHHHHHHHHhCCcccccC--cccchHHHHHH-hCCChhHHHHHHHhC
Q 040691          333 QFPQIKLGEFFTNLRQCVVFLNEIEME------AKEIGNIVRTHPVLLGTC--ALKKTSSLLTI-LKVGRKRLCAIILED  403 (585)
Q Consensus       333 ~~P~lL~~s~e~~l~p~v~fL~~lG~~------~~~I~~il~~~P~iL~~~--~lk~~v~~L~~-lGl~~~~l~~ii~~~  403 (585)
                      ++|++|+++++++ ++++++|+++|++      .+.|.+++.++|++++++  ++++++++|++ +|++.+++..++.+.
T Consensus       146 ~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~~~v~fL~~~~G~~~~~~~~~i~~~  224 (343)
T 3mva_O          146 NAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKANIEFLRSTFNLNSEELLVLICGP  224 (343)
T ss_dssp             HCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHHSCCCHHHHHHHHHTT
T ss_pred             hCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            9999999999865 9999999999885      789999999999999985  79999999995 999999999999886


Q ss_pred             chhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH----HcCCCHHH
Q 040691          404 PQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV----EAGLERKD  479 (585)
Q Consensus       404 P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~----~~G~s~~~  479 (585)
                      |..+.    +           .+.                                 +.|+++++|+.    ++||+.+|
T Consensus       225 ~~~~l----~-----------~s~---------------------------------~~l~~~~~~l~e~~~~lG~s~~e  256 (343)
T 3mva_O          225 GAEIL----D-----------LSN---------------------------------DYARRSYANIKEKLFSLGCTEEE  256 (343)
T ss_dssp             TGGGG----G-----------CCT---------------------------------THHHHHHHHHHHHHHTTTCCHHH
T ss_pred             ChHHh----h-----------ccH---------------------------------HHHHHHHHHHHHHHHHcCCCHHH
Confidence            64331    1           111                                 34566665555    79999999


Q ss_pred             HHHHHHhcCcccccCHHHHHHHHHHHHHhcCCCcccccccccccccchhhHHHhHHHHHHHHHcCCCCCCcccc--cccc
Q 040691          480 VCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPTLALS--TIIT  557 (585)
Q Consensus       480 v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l~~fP~~L~yslerikpR~~~~~~L~~~g~~~~~~sl~--~il~  557 (585)
                      |++||+++|++|++|.|+|++|++||++ ||++.++|+++|++|+||+|||+|||   ++|+++|+   +++++  +||+
T Consensus       257 v~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sleri~~R~---~~L~~~g~---~~~~~~~~~l~  329 (343)
T 3mva_O          257 VQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSISTLKSRI---KELVNAGC---NLSTLNITLLS  329 (343)
T ss_dssp             HHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHHHHHHHH---HHHHTTTC---CSSSSCGGGGG
T ss_pred             HHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHHHHHHHH---HHHHHCCC---CCCCCcchhhc
Confidence            9999999999999999999999999999 99999999999999999999999999   47999998   67777  9999


Q ss_pred             cChHHHHHHHhhh
Q 040691          558 CSDKLFVTRYVNR  570 (585)
Q Consensus       558 ~sd~~F~~~~v~~  570 (585)
                      +||++|+++|.+.
T Consensus       330 ~s~~~F~~~~~~~  342 (343)
T 3mva_O          330 WSKKRYEAKLKKL  342 (343)
T ss_dssp             SCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhcc
Confidence            9999999999764

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=5.3e-44  Score=363.75  Aligned_cols=256  Identities=16%  Similarity=0.255  Sum_probs=234.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHHHH
Q 040691          275 FSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLN  354 (585)
Q Consensus       275 ~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~  354 (585)
                      .++++||.++|++.++|.+....+|.+|++++++++.|+++||.++|+++++|++++.++|.+|++++++ +.|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4678999999999999987777777789999999999999999999999999999999999999999997 999999999


Q ss_pred             hhhhchHHHHHHHHhCCcccccC--cccchHHHH-HHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhH
Q 040691          355 EIEMEAKEIGNIVRTHPVLLGTC--ALKKTSSLL-TILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDT  431 (585)
Q Consensus       355 ~lG~~~~~I~~il~~~P~iL~~~--~lk~~v~~L-~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~  431 (585)
                      ++|++.++|.+++.++|++|+++  ++++++++| .++|++.+++.+++.++|+++.     .           +.    
T Consensus        85 ~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~-----~-----------s~----  144 (270)
T 3m66_A           85 SKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLT-----G-----------SL----  144 (270)
T ss_dssp             HTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGT-----S-----------CS----
T ss_pred             HcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCccee-----e-----------ch----
Confidence            99999999999999999999884  799999999 5899999999999999999983     1           11    


Q ss_pred             HHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH-HcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcC
Q 040691          432 LKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV-EAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFG  510 (585)
Q Consensus       432 ~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~-~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg  510 (585)
                                                   +.++++++++. ++||+.+||.+||.++|++|++|.++|++|++||+++||
T Consensus       145 -----------------------------e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg  195 (270)
T 3m66_A          145 -----------------------------EPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMS  195 (270)
T ss_dssp             -----------------------------HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSC
T ss_pred             -----------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhC
Confidence                                         35678888765 999999999999999999999999999999999999999


Q ss_pred             CCcccccccccccccchhhHHHhHHHHHHHHHcCCCCCC---cccccccccChHHHHHHHhhhCCChhHHHHh
Q 040691          511 YPISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVEPT---LALSTIITCSDKLFVTRYVNRHPGGHQVWQS  580 (585)
Q Consensus       511 ~~~~~l~~fP~~L~yslerikpR~~~~~~L~~~g~~~~~---~sl~~il~~sd~~F~~~~v~~~p~~~~~we~  580 (585)
                      ++.++|++||++|+||+|||+|||+++++|.++|+.+.+   ++|++++++||++|+++|++.+++..+.+.+
T Consensus       196 ~~~~~i~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~~f~k  268 (270)
T 3m66_A          196 IPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLK  268 (270)
T ss_dssp             CCHHHHHHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHHHHHT
T ss_pred             CCHHHHHhCchHhhCCHHHHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHHHHHh
Confidence            999999999999999999999999999999999997654   6899999999999999999999988777754

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=301.58  Aligned_cols=218  Identities=17%  Similarity=0.317  Sum_probs=191.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHH
Q 040691          273 TMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVF  352 (585)
Q Consensus       273 ~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~f  352 (585)
                      ++...+++|.++||++++|++++.++|.++.    .++.+++.||..+|++.++|+++|.++|.+|+++++ +|+++++|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            3456788888999999999999999999874    468889999999999999999999999999999986 69999999


Q ss_pred             HHhhhhchHHHHHHHHhCCcccccCcccchHHHHHHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHH
Q 040691          353 LNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTL  432 (585)
Q Consensus       353 L~~lG~~~~~I~~il~~~P~iL~~~~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~  432 (585)
                      |+++|++.++|.+++.++|++++++.                                                      
T Consensus       120 L~~lGl~~~~i~~ll~~~P~lL~~s~------------------------------------------------------  145 (335)
T 4fp9_B          120 LQKLGLGEGKLKRVLYCCPEIFTMRQ------------------------------------------------------  145 (335)
T ss_dssp             HHHTTCTTTTHHHHHHHCGGGGTSCH------------------------------------------------------
T ss_pred             HHHcCCCHHHHHHHHHhCchhhccCh------------------------------------------------------
Confidence            99899998888888888888886430                                                      


Q ss_pred             HHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH-HcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcCC
Q 040691          433 KAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV-EAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGY  511 (585)
Q Consensus       433 k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~-~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~  511 (585)
                                                  +.+++++.+|. ++||+.++|..||.++|+||++|.+.|++|++||+++||+
T Consensus       146 ----------------------------e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl  197 (335)
T 4fp9_B          146 ----------------------------QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGI  197 (335)
T ss_dssp             ----------------------------HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCC
T ss_pred             ----------------------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCC
Confidence                                        24567777886 8999999999999999999999999999999999999999


Q ss_pred             CcccccccccccccchhhHHHhHHHHHHHHHcCCCC----------CCcccccccccChHHHHHHHhhhCCChhHHHHhh
Q 040691          512 PISSLKPFPQYLMYNMKTVKCRLSMYNWLKDRKLVE----------PTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSL  581 (585)
Q Consensus       512 ~~~~l~~fP~~L~yslerikpR~~~~~~L~~~g~~~----------~~~sl~~il~~sd~~F~~~~v~~~p~~~~~we~~  581 (585)
                      +.++|++ |+||+||++||+|||.+   |+..|..+          ++++|.+++.+||++|+.++++.+++..+.|.++
T Consensus       198 ~~~eIvk-P~~l~ySLeRIkpRH~f---L~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k~  273 (335)
T 4fp9_B          198 KHPDIVK-SEYLQYSLTKIKQRHIY---LERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL  273 (335)
T ss_dssp             CHHHHHH-TTGGGSCHHHHHHHHHH---HHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             CHHHccc-cchhhccHHHHHHHHHH---HHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999997 99999999999999975   66667752          3567999999999999999999999999998764

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=7.2e-34  Score=298.64  Aligned_cols=306  Identities=15%  Similarity=0.201  Sum_probs=253.5

Q ss_pred             cchHHHHHhcCCCCCccccCCcccccCCCchHHHhhHHHHHHhCCCCcchHhHHHhhcccccccchhhHHHHHHHHHhCC
Q 040691          138 NEFEPFFESLGLKPCEYSHLLPRDLIFLNDDDLLLENYHVLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLG  217 (585)
Q Consensus       138 ~e~~~fleslg~~~~~~~~llp~~~~fL~~~~~l~e~~~~L~~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~l~~L~~lG  217 (585)
                      ++...||.++|++++.+....|.-  ++.+-+...+.+.+|.++|++.+++++++..+|.++.++++.+.++++||+++|
T Consensus        20 ~~~v~~L~s~Gl~~~~~~~~~p~l--~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG   97 (343)
T 3mva_O           20 EDLLKNLLTMGVDIDMARKRQPGV--FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIV   97 (343)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHCGGG--GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHhCchh--hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcC
Confidence            356689999999988876554432  233222335678999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhCCceeecChh-hHHHHHHHHHHhCCCCcchhhhhhhcccccchhhhHHHHHHHHhcCCCHHHHHHHHH
Q 040691          218 LSQSFVRKVIVRNPKFLVGDVN-LEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIR  296 (585)
Q Consensus       218 ls~~~i~~ii~~~P~lL~~~v~-~~l~p~v~~L~~lGl~~~~i~~~l~~~p~~~~~~l~~~l~fL~~lG~s~~~I~~ii~  296 (585)
                      +++++++++|.++|.+|..+.+ .++.|.++                                ||+++|++.++|++++.
T Consensus        98 ~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~--------------------------------fL~~lGl~~~~i~~ll~  145 (343)
T 3mva_O           98 TSDLEIVNILERSPESFFRSNNNLNLENNIK--------------------------------FLYSVGLTRKCLCRLLT  145 (343)
T ss_dssp             SCHHHHHHHHHHCSHHHHSCCCHHHHHHHHH--------------------------------HHHHTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCHHHhCCChHhhHHHHHH--------------------------------HHHHhCCCHHHHHHHHH
Confidence            9999999999999995544444 36766654                                55666888888999999


Q ss_pred             hCCcccccCccccHHHHHHHHHhcCCC------hhHHHHHHhhCCceeecccccchhHHHHHHH-hhhhchHHHHHHHHh
Q 040691          297 QHPEILFEDSGNMALSLVGFLLKFGTS------MNEICLMFQQFPQIKLGEFFTNLRQCVVFLN-EIEMEAKEIGNIVRT  369 (585)
Q Consensus       297 ~~P~lL~~~~e~~L~p~v~fL~~lG~~------~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~-~lG~~~~~I~~il~~  369 (585)
                      ++|++|+.+.++. +|++++|+++|++      .+.|.+++.++|.+|+++ +++++++++||+ ++|++++++.+++.+
T Consensus       146 ~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~  223 (343)
T 3mva_O          146 NAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICG  223 (343)
T ss_dssp             HCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHT
T ss_pred             hCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            9999999998876 9999999987764      678999999999999999 678999999998 599999999999988


Q ss_pred             CC-ccccc--CcccchHHHHH----HhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCC
Q 040691          370 HP-VLLGT--CALKKTSSLLT----ILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGF  442 (585)
Q Consensus       370 ~P-~iL~~--~~lk~~v~~L~----~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~  442 (585)
                      .| .+++.  +.+++++.++.    ++|++.+++..++.++|++|.     .           +                
T Consensus       224 ~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~-----~-----------s----------------  271 (343)
T 3mva_O          224 PGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIF-----L-----------A----------------  271 (343)
T ss_dssp             TTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGG-----S-----------C----------------
T ss_pred             CChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhc-----c-----------c----------------
Confidence            55 67765  45777775555    799999999999999999983     1           1                


Q ss_pred             CcchhhHHHHHHHHhhccHHHHHHHHHHHHcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcCCCcccccccccc
Q 040691          443 EENSKQFETALKDLRTRARDLRERFDLIVEAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQY  522 (585)
Q Consensus       443 ~e~~~~~~~al~~~~~~~~~l~~rv~fL~~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l~~fP~~  522 (585)
                                       .++++++++||.++|++.++|    .++|++|++|.|+|++|++||.+ .|+..+.  .+-.+
T Consensus       272 -----------------~~~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sleri~~R~~~L~~-~g~~~~~--~~~~~  327 (343)
T 3mva_O          272 -----------------EKKFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELVN-AGCNLST--LNITL  327 (343)
T ss_dssp             -----------------HHHHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHHHHHHHHHHHHT-TTCCSSS--SCGGG
T ss_pred             -----------------HHHHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHHHHHHHHHHHHH-CCCCCCC--Ccchh
Confidence                             146899999999999999886    49999999999999999999988 6986542  22388


Q ss_pred             cccchhhHHHhHH
Q 040691          523 LMYNMKTVKCRLS  535 (585)
Q Consensus       523 L~yslerikpR~~  535 (585)
                      |+.|-++...||.
T Consensus       328 l~~s~~~F~~~~~  340 (343)
T 3mva_O          328 LSWSKKRYEAKLK  340 (343)
T ss_dssp             GGSCHHHHHHHHH
T ss_pred             hcCCHHHHHHHHh
Confidence            8888878877774

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.97  E-value=2.4e-30  Score=262.98  Aligned_cols=240  Identities=18%  Similarity=0.217  Sum_probs=200.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcchhhhhhhcccccchhhhHHHHHHHHhcCC
Q 040691          207 RSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGC  286 (585)
Q Consensus       207 ~~~l~~L~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~~i~~~l~~~p~~~~~~l~~~l~fL~~lG~  286 (585)
                      .+++++|.++|++.++|.+....+|.+|.++++.++.|+++                                ||.++|+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~--------------------------------fL~~lG~   53 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLL--------------------------------FLKDVGI   53 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHH--------------------------------HHHHHTC
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHH--------------------------------HHHHcCC
Confidence            36799999999999999887777788899999887776665                                5555677


Q ss_pred             CHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHHH-HhhhhchHHHHH
Q 040691          287 SEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFL-NEIEMEAKEIGN  365 (585)
Q Consensus       287 s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL-~~lG~~~~~I~~  365 (585)
                      +.++|++++.++|.+|++++++ +.|+++||+++|++.++|++++.++|++|+++++ +++|+++|| +++|++.+++.+
T Consensus        54 ~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~  131 (270)
T 3m66_A           54 EDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRD  131 (270)
T ss_dssp             CGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHH
T ss_pred             CHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHH
Confidence            7778889999999999999998 9999999999999999999999999999999998 599999999 689999999999


Q ss_pred             HHHhCCcccccC--cccchHHHH-HHhCCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCC
Q 040691          366 IVRTHPVLLGTC--ALKKTSSLL-TILKVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGF  442 (585)
Q Consensus       366 il~~~P~iL~~~--~lk~~v~~L-~~lGl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~  442 (585)
                      ++.++|++++.+  +++++++++ .++|++.+++..++.++|++|.     .           ++               
T Consensus       132 ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~-----~-----------s~---------------  180 (270)
T 3m66_A          132 LVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLT-----A-----------NK---------------  180 (270)
T ss_dssp             HHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGT-----S-----------CH---------------
T ss_pred             HHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhe-----e-----------cH---------------
Confidence            999999999884  678889865 7899999999999999999983     1           11               


Q ss_pred             CcchhhHHHHHHHHhhccHHHHHHHHHHH-HcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHh--cCCCccccccc
Q 040691          443 EENSKQFETALKDLRTRARDLRERFDLIV-EAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVND--FGYPISSLKPF  519 (585)
Q Consensus       443 ~e~~~~~~~al~~~~~~~~~l~~rv~fL~-~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~--mg~~~~~l~~f  519 (585)
                                        ++++++++||. ++|++.++|    .++|++|++|.|+|+|++.|+..-  .|+...+ ..+
T Consensus       181 ------------------~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~-~~~  237 (270)
T 3m66_A          181 ------------------MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAK-PNY  237 (270)
T ss_dssp             ------------------HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTS-SSC
T ss_pred             ------------------HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHHHHHHHHHHHHHhhccCCCCCC-CCC
Confidence                              46899999998 899999876    499999999999999999998862  2443333 123


Q ss_pred             cc---ccccchhhHHHhH
Q 040691          520 PQ---YLMYNMKTVKCRL  534 (585)
Q Consensus       520 P~---~L~yslerikpR~  534 (585)
                      |.   +|..|-++...|+
T Consensus       238 ~~L~~~l~~sd~~F~~~~  255 (270)
T 3m66_A          238 ISLDKLVSIPDEIFCEEI  255 (270)
T ss_dssp             CCHHHHHHSCHHHHHHHT
T ss_pred             CCHHHHhcCCHHHHHHHH
Confidence            33   5666665666554

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.90  E-value=6e-23  Score=213.21  Aligned_cols=180  Identities=16%  Similarity=0.248  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhCCCCcchhhhhhhcccccchhhhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcC
Q 040691          242 FIKVLEILKSMGIEFSWIGEHSTEQSTFNWRTMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFG  321 (585)
Q Consensus       242 l~p~v~~L~~lGl~~~~i~~~l~~~p~~~~~~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG  321 (585)
                      +.+++..|.++|+++.+|+++++..|.....++.+++.||..+|++.++|++|+.++|++|+.+++ +|.|+++||+++|
T Consensus        46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL~~lG  124 (335)
T 4fp9_B           46 LERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLG  124 (335)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHHHHcC
Confidence            333444444444444444444444444434444566778888899999999999999999998885 7999999999999


Q ss_pred             CChhHHHHHHhhCCceeecccccchhHHHHHH-HhhhhchHHHHHHHHhCCcccccCcccchHHHHHHhCCChhHHHHHH
Q 040691          322 TSMNEICLMFQQFPQIKLGEFFTNLRQCVVFL-NEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAII  400 (585)
Q Consensus       322 ~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL-~~lG~~~~~I~~il~~~P~iL~~~~lk~~v~~L~~lGl~~~~l~~ii  400 (585)
                      ++.+++++++.++|++|+++.+ .+..++.+| .++|++.++|.+++.++|++|+++.                      
T Consensus       125 l~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~----------------------  181 (335)
T 4fp9_B          125 LGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL----------------------  181 (335)
T ss_dssp             CTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH----------------------
T ss_pred             CCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH----------------------
Confidence            9999999999999999999998 688888888 5789999999888888888886530                      


Q ss_pred             HhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHHHH-HcCCCHHH
Q 040691          401 LEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDLIV-EAGLERKD  479 (585)
Q Consensus       401 ~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~fL~-~~G~s~~~  479 (585)
                                                                                  ++|+++++||. ++|++.++
T Consensus       182 ------------------------------------------------------------e~L~~K~efLv~~Mgl~~~e  201 (335)
T 4fp9_B          182 ------------------------------------------------------------GQLEYKFQYAYFRMGIKHPD  201 (335)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHHHTTTCCCHHH
T ss_pred             ------------------------------------------------------------HHHHHHHHHHHHHhCCCHHH
Confidence                                                                        35799999999 99999998


Q ss_pred             HHHHHHhcCcccccCHHHHHHHHHHHHHhcCC
Q 040691          480 VCDMVRVAPLILKQKKEVLKTKIDYFVNDFGY  511 (585)
Q Consensus       480 v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~  511 (585)
                      |.    + |++|+||.++|+++..||.. +|.
T Consensus       202 Iv----k-P~~l~ySLeRIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          202 IV----K-SEYLQYSLTKIKQRHIYLER-LGR  227 (335)
T ss_dssp             HH----H-TTGGGSCHHHHHHHHHHHHH-HTS
T ss_pred             cc----c-cchhhccHHHHHHHHHHHHH-cCC
Confidence            75    3 99999999999999999998 787

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=102.83  Aligned_cols=188  Identities=17%  Similarity=0.341  Sum_probs=146.5

Q ss_pred             HHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHHHHhhhhchHHHHHHHHhCCcccccCcccchHHHHHHh
Q 040691          310 ALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTIL  389 (585)
Q Consensus       310 L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il~~~P~iL~~~~lk~~v~~L~~l  389 (585)
                      +...+..|.-+|++++-++-++.+.|++|...+- .++.+-.||..+|+.+..+.+++-.||.++.+..           
T Consensus        33 lldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-----------  100 (239)
T 4fzv_B           33 LLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-----------  100 (239)
T ss_dssp             TTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-----------
T ss_pred             HHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-----------
Confidence            3344555666788888888888888888887775 5777777888888877777777777777775420           


Q ss_pred             CCChhHHHHHHHhCchhhHhhhhccCCCCCCcccccccchhHHHHHHHHHhCCCcchhhHHHHHHHHhhccHHHHHHHHH
Q 040691          390 KVGRKRLCAIILEDPQEMKKWVMGCRLKPLPRLQLKEEESDTLKAEFLLEVGFEENSKQFETALKDLRTRARDLRERFDL  469 (585)
Q Consensus       390 Gl~~~~l~~ii~~~P~~L~~~~~g~~~~~~~~~~~~~~~~~~~k~~fL~~lG~~e~~~~~~~al~~~~~~~~~l~~rv~f  469 (585)
                                                                                             ..+...+..
T Consensus       101 -----------------------------------------------------------------------qdindtvrl  109 (239)
T 4fzv_B          101 -----------------------------------------------------------------------QDINDTVRL  109 (239)
T ss_dssp             -----------------------------------------------------------------------HHHHHHHHH
T ss_pred             -----------------------------------------------------------------------hhHhHHHHH
Confidence                                                                                   123445556


Q ss_pred             HH-HcCCCHHHHHHHHHhcCcccccCHHHHHHHHHHHHHhcCCCcccccccccccccchhhHHHhHHHHHHHHH------
Q 040691          470 IV-EAGLERKDVCDMVRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLKPFPQYLMYNMKTVKCRLSMYNWLKD------  542 (585)
Q Consensus       470 L~-~~G~s~~~v~~mI~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l~~fP~~L~yslerikpR~~~~~~L~~------  542 (585)
                      |. .+-|+..+|.+++..||.+|.-....++-|+.|-.-.||....++++ ..||.||+..||.||-+++.|-.      
T Consensus       110 lkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-seylqysltkikqrhiylerlgryqtpdk  188 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLTKIKQRHIYLERLGRYQTPDK  188 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHHHHHHHHHHHHHHTCCCCCCS
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-HHHHHHHHHHHHHHHhHHHHhcccCCCCc
Confidence            66 67899999999999999999999999999999998889999999987 57999999999999987665522      


Q ss_pred             cCCC-CCCcccccccccChHHHHHHHhhhCCChhHHHHhh
Q 040691          543 RKLV-EPTLALSTIITCSDKLFVTRYVNRHPGGHQVWQSL  581 (585)
Q Consensus       543 ~g~~-~~~~sl~~il~~sd~~F~~~~v~~~p~~~~~we~~  581 (585)
                      +|-. .|+.-+..++..|+.+|..|-....-+..+|+.++
T Consensus       189 kgqtqipnpllkdilrvseaeflartactsveefqvfkkl  228 (239)
T 4fzv_B          189 KGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKL  228 (239)
T ss_dssp             SSCCSSCCCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHHH
T ss_pred             cCCccCCChHHHHHHHHhHHHHHHHHhcccHHHHHHHHHH
Confidence            1111 14566889999999999999988887888887655

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=97.93  E-value=9.7e-05  Score=65.85  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCceeecccccchhHHHHH
Q 040691          273 TMFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVF  352 (585)
Q Consensus       273 ~l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~f  352 (585)
                      .+...+.-|.-+|++++-+.-++.+.|++|..... .++.+-.||+++|+....+.+++-.+|.++++.-. .+...+..
T Consensus        32 qlldiisefillglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrl  109 (239)
T 4fzv_B           32 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRL  109 (239)
T ss_dssp             TTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHH
Confidence            44456667777899999999999999999986544 68889999999999999999999999999999875 79999999


Q ss_pred             HH-hhhhchHHHHHHHHhCCcccc
Q 040691          353 LN-EIEMEAKEIGNIVRTHPVLLG  375 (585)
Q Consensus       353 L~-~lG~~~~~I~~il~~~P~iL~  375 (585)
                      |+ .+-++..++.+++.+||.++.
T Consensus       110 lkekclftvqqvtkilhscpsvlr  133 (239)
T 4fzv_B          110 LKEKCLFTVQQVTKILHSCPSVLR  133 (239)
T ss_dssp             HHHHSCCCHHHHHHHHHHCGGGGT
T ss_pred             HHHhHHhhHHHHHHHHHhCcHHHH
Confidence            95 588899999999999998884

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=93.38  E-value=1.4  Score=48.71  Aligned_cols=42  Identities=26%  Similarity=0.412  Sum_probs=23.4

Q ss_pred             cCCCCCccccCCcccccCCCchHHHhhH----HHHHHh-CCCCcchHhHHHh
Q 040691          147 LGLKPCEYSHLLPRDLIFLNDDDLLLEN----YHVLCN-YGFARKKIGMIYK  193 (585)
Q Consensus       147 lg~~~~~~~~llp~~~~fL~~~~~l~e~----~~~L~~-~Gi~~~kig~l~~  193 (585)
                      .|+.|+++-.....+-     -...+|.    .+.|+. +|++++++..|-.
T Consensus       219 ~~ls~~qVvaIAsn~g-----GkqALeaV~~~lp~l~~~~gls~~qvVaIAs  265 (1047)
T 3ugm_A          219 HGLTPAQVVAIASHDG-----GKQALETMQRLLPVLCQAHGLPPDQVVAIAS  265 (1047)
T ss_dssp             SCCCHHHHTTTTTSTT-----HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred             cCCCHHHHHHHhhccc-----hHHHHHHHHHhhhhhhhccCCCHHHHHHHHh
Confidence            6777777755543321     1122332    355664 7888777777653

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}

Probab=87.80  E-value=2.2  Score=47.22  Aligned_cols=206  Identities=12%  Similarity=0.124  Sum_probs=97.5

Q ss_pred             HHHHH-hCCCCcchHhHHHhhcccccccchhhHHHH---HHHHH-hCCCCHHHHHHHHhhCCceeecChhhHHHHHHH--
Q 040691          175 YHVLC-NYGFARKKIGMIYKEATEVFRYDFGVLRSK---LQAFE-KLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLE--  247 (585)
Q Consensus       175 ~~~L~-~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~---l~~L~-~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~--  247 (585)
                      .++|| .+|++++.+..|-.+..     .-..|+.+   +-.|. ..|++.++|.+|-..      +.- .-+..+.+  
T Consensus       348 lpvL~~~~gls~~qvVaIAsn~G-----GkQALe~V~~llp~L~~~~gls~~~vvaiA~~------GG~-qALe~V~~L~  415 (1047)
T 3ugm_A          348 LPVLCQAHGLTPDQVVAIASNGG-----GKQALETVQRLLPVLCQAHGLTPDQVVAIASN------GGK-QALETVQRLL  415 (1047)
T ss_dssp             HHHHHTTSCCCHHHHHHHHSSTT-----HHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH------THH-HHHHHHHHHH
T ss_pred             hhhhhhhccCCHHHhhhhhhcCc-----hHHHHHHHHHhhhhhhhhcCCCHHHHHHHhcc------cch-hHHHHHhhcc
Confidence            45566 47777777777643321     11122222   22333 367888777776641      111 11222222  


Q ss_pred             -HHH-hCCCCcchhhhhhhccc-ccchhhhHHHHHHHH-hcCCCHHHHHHHHHhCCcccccCccccHHHHH---HHHH-h
Q 040691          248 -ILK-SMGIEFSWIGEHSTEQS-TFNWRTMFSFLSFCS-KIGCSEEQLRILIRQHPEILFEDSGNMALSLV---GFLL-K  319 (585)
Q Consensus       248 -~L~-~lGl~~~~i~~~l~~~p-~~~~~~l~~~l~fL~-~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v---~fL~-~  319 (585)
                       .|. +-|++++++.++-+... -...+.+.+.+--|. ..|++.++|.+|-+..-      -...|....   ..++ .
T Consensus       416 p~l~~~~glt~~qvv~IAsn~GGkQALe~V~~llp~L~~~~glt~aqvVaIAsn~G------GkQALeaV~~llpvl~~~  489 (1047)
T 3ugm_A          416 PVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDG------GKQALETVQQLLPVLCQA  489 (1047)
T ss_dssp             HHHHTTSSCCHHHHHHHHSSTTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHSSSTT------HHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhcCCCHHHhhhhhccCchHHHHHHHHHHhHHhhcccCCCHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHh
Confidence             232 46888888877766544 122233333333333 57888888887765542      112222222   2233 3


Q ss_pred             cCCChhHHHHHHhhCCceeecccccchhHHHHHHHhhhhchHHHHHHHHhCCcccccCcccchHHHHH-HhCCChhHHHH
Q 040691          320 FGTSMNEICLMFQQFPQIKLGEFFTNLRQCVVFLNEIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLT-ILKVGRKRLCA  398 (585)
Q Consensus       320 lG~~~~~i~~vl~~~P~lL~~s~e~~l~p~v~fL~~lG~~~~~I~~il~~~P~iL~~~~lk~~v~~L~-~lGl~~~~l~~  398 (585)
                      .|++.++|..|...+-.--...--..+.|.+.  .+.|++.++|.+|-....---....+..-.-.|+ ..|++.+++.+
T Consensus       490 ~gls~~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls~~qVVaIAsN~GGkQALeaV~~~lp~Lr~a~~ls~~qVVa  567 (1047)
T 3ugm_A          490 HGLTPDQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA  567 (1047)
T ss_dssp             SCCCSHHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCCSHHHHHHHSSTTCHHHHHHHHHHHHHHTTTSCCTHHHHHH
T ss_pred             cCCCHHHHHHHHhccchHHHHHHHHHhhhhhc--cccCCCHHHhhhhhcCCcHHHHHHHHHHHhHHHHHHhCCCHHHeee
Confidence            78888888887754332111100011222221  3667777777766543211000012222223344 36666666555


Q ss_pred             HH
Q 040691          399 II  400 (585)
Q Consensus       399 ii  400 (585)
                      |-
T Consensus       568 IA  569 (1047)
T 3ugm_A          568 IA  569 (1047)
T ss_dssp             HT
T ss_pred             ec
Confidence            43

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=86.70  E-value=5.1  Score=41.08  Aligned_cols=211  Identities=9%  Similarity=0.057  Sum_probs=101.3

Q ss_pred             HHHhCCCCcchHhHHHhhcccccccchhhHHHHHHHHH--hCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHh--C
Q 040691          177 VLCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFE--KLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKS--M  252 (585)
Q Consensus       177 ~L~~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~l~~L~--~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~--l  252 (585)
                      .|..+|++..+|-+|..+-.     ..+.+......|.  -.+++.++|..+-..+--.....   .+.++.-.|..  +
T Consensus        35 ~l~~~g~t~~~i~~is~~~~-----al~~va~~y~~l~aal~~lt~~~iV~ia~~~~g~~Al~---a~~~~~~~L~~~p~  106 (463)
T 4hpz_A           35 ALVGHGFTHAHIVALSQHPA-----ALGTVAVKYQDMIAALPEATHEAIVGVGKQWSGACALE---ALLTVAGELRGPPL  106 (463)
T ss_dssp             HHHHTTCCHHHHHHHTTSTH-----HHHHHHTTHHHHHHHSTTCCHHHHHHHHTSTTTTHHHH---HHHHHHHHHHSTTT
T ss_pred             HHHhcCCCHHHHHHhhccHh-----HHHHHHHhhHHHHhhccccCHHHHHHHHhccchHHHHH---HHHHHHHHhhcCcc
Confidence            57778888887777754411     1122211112222  14677777777666554433211   24444445554  5


Q ss_pred             CCCcchhhhhhhcccccchhhhHHHHHHHHh--cCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHh-cCCChhHHHH
Q 040691          253 GIEFSWIGEHSTEQSTFNWRTMFSFLSFCSK--IGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLK-FGTSMNEICL  329 (585)
Q Consensus       253 Gl~~~~i~~~l~~~p~~~~~~l~~~l~fL~~--lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~-lG~~~~~i~~  329 (585)
                      |++.+++..+-+....-..+.+.+...-|..  +|++++++.+|-..+-.-=.   -+.+.....-|+. .|++++++..
T Consensus       107 ~l~~~qiv~IA~~Gg~~Aleav~~~~~~L~~apl~Lsp~qvVaIAsn~GGkqA---LeaV~~llpvL~~a~~Ls~~qVVa  183 (463)
T 4hpz_A          107 QLDTGQLLKIAKRGGVTAVEVHHTWRNALTGAPLNLTPDQVVAIASNIGGKQA---LETVQRLLPVLCQDHGLTPQQVVA  183 (463)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHSTTTCCCHHHHHHHHSSTTHHHH---HHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             CCCHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCccHHH---HHHHHHHHHHHhhhcCCCHHHHHH
Confidence            7777777666553222222333333334444  57778777777654421000   0112223333443 6778777777


Q ss_pred             HHhhCCceeecccccchhHHHHHHHh-hhhchHHHHHHHHhCCcccccCcccchHHHHH-HhCCChhHHHHHHH
Q 040691          330 MFQQFPQIKLGEFFTNLRQCVVFLNE-IEMEAKEIGNIVRTHPVLLGTCALKKTSSLLT-ILKVGRKRLCAIIL  401 (585)
Q Consensus       330 vl~~~P~lL~~s~e~~l~p~v~fL~~-lG~~~~~I~~il~~~P~iL~~~~lk~~v~~L~-~lGl~~~~l~~ii~  401 (585)
                      +-...-.--.  ++ .+......|.. .|++.++|.+|-....---.-..++.....|+ ..|++..++.+|-.
T Consensus       184 IAsn~GGkQA--Le-aV~~llpvl~~~~~Ls~aqVVaIAsn~GGkQALeaV~~llpvl~~~~gls~aqVVaIAs  254 (463)
T 4hpz_A          184 IASNGGGKQA--LE-TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQDHGLTPQQVVAIAS  254 (463)
T ss_dssp             HHTSTTHHHH--HH-HHHHHHHHHHHHHCCCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHS
T ss_pred             HhhcCchHHH--HH-HHHHHHHHhhccccCCHHHHHHHhhccccHHHHHHHHhhhhhhhhhccCCHHHHHHHhc
Confidence            6554321111  11 23333344433 67777777766432110000012222333443 36777777776644

>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}

Probab=84.72  E-value=2  Score=31.65  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=16.4

Q ss_pred             hhHHHHHHHHhcCCCHHHHHHHHHh
Q 040691          273 TMFSFLSFCSKIGCSEEQLRILIRQ  297 (585)
Q Consensus       273 ~l~~~l~fL~~lG~s~~~I~~ii~~  297 (585)
                      .+..+++||++-|++.++|..++.+
T Consensus        29 p~~~K~~FL~sKGLt~~EI~~Al~r   53 (54)
T 3ff5_A           29 PLATRRAFLKKKGLTDEEIDLAFQQ   53 (54)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            3455667777777777777766654

>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}

Probab=83.71  E-value=15  Score=37.68  Aligned_cols=297  Identities=10%  Similarity=0.100  Sum_probs=159.7

Q ss_pred             HHhCCCCcchHhHHHhhcccccccchhhHHHHHHHHHhCCCCHHHHHHHHhhCCceeecChhhHHHHHHHHHHhCCCCcc
Q 040691          178 LCNYGFARKKIGMIYKEATEVFRYDFGVLRSKLQAFEKLGLSQSFVRKVIVRNPKFLVGDVNLEFIKVLEILKSMGIEFS  257 (585)
Q Consensus       178 L~~~Gi~~~kig~l~~~~~~ll~~~~~~l~~~l~~L~~lGls~~~i~~ii~~~P~lL~~~v~~~l~p~v~~L~~lGl~~~  257 (585)
                      |+..|.++..+.++-.+       +...+..-=+.|...||+.++|..+-.+ |.-|. -+..+....+..|  -+++.+
T Consensus         8 l~~lgys~~q~~k~k~~-------~~s~va~~h~~l~~~g~t~~~i~~is~~-~~al~-~va~~y~~l~aal--~~lt~~   76 (463)
T 4hpz_A            8 LRTLGYSQQQQEKIKPK-------VRSTVAQHHEALVGHGFTHAHIVALSQH-PAALG-TVAVKYQDMIAAL--PEATHE   76 (463)
T ss_dssp             GGGGTCCHHHHHHHCGG-------GHHHHHHHHHHHHHTTCCHHHHHHHTTS-THHHH-HHHTTHHHHHHHS--TTCCHH
T ss_pred             HHHhccCHHHHHHhhHH-------HHHHHHHHHHHHHhcCCCHHHHHHhhcc-HhHHH-HHHHhhHHHHhhc--cccCHH
Confidence            56678888888877522       2345555566788899999999877554 65442 1222233333333  356777


Q ss_pred             hhhhhhhccc-ccchhhhHHHHHHHHh--cCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHh--cCCChhHHHHHHh
Q 040691          258 WIGEHSTEQS-TFNWRTMFSFLSFCSK--IGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLK--FGTSMNEICLMFQ  332 (585)
Q Consensus       258 ~i~~~l~~~p-~~~~~~l~~~l~fL~~--lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~--lG~~~~~i~~vl~  332 (585)
                      +|..+-+... ....+.+..+..-|..  +|++.++|.+|...-    +.---+.+.....-|..  ++++++++..+-.
T Consensus        77 ~iV~ia~~~~g~~Al~a~~~~~~~L~~~p~~l~~~qiv~IA~~G----g~~Aleav~~~~~~L~~apl~Lsp~qvVaIAs  152 (463)
T 4hpz_A           77 AIVGVGKQWSGACALEALLTVAGELRGPPLQLDTGQLLKIAKRG----GVTAVEVHHTWRNALTGAPLNLTPDQVVAIAS  152 (463)
T ss_dssp             HHHHHHTSTTTTHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHH----HHHHHHHHHHTHHHHHSTTTCCCHHHHHHHHS
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhhcCccCCCHHHHHHHHhhC----cHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHh
Confidence            7766654433 2334455556666765  499999999998731    00001123334444555  7899999988876


Q ss_pred             hCCceeecccccchhHHHHHHH-hhhhchHHHHHHHHhCCcccccCcccchHHHHHH-hCCChhHHHHHHHhCchhhHhh
Q 040691          333 QFPQIKLGEFFTNLRQCVVFLN-EIEMEAKEIGNIVRTHPVLLGTCALKKTSSLLTI-LKVGRKRLCAIILEDPQEMKKW  410 (585)
Q Consensus       333 ~~P~lL~~s~e~~l~p~v~fL~-~lG~~~~~I~~il~~~P~iL~~~~lk~~v~~L~~-lGl~~~~l~~ii~~~P~~L~~~  410 (585)
                      ..-.--..  + .+......|+ ..|++.++|.+|-+...---.-..++.....|+. .|++.+++.+|-...-.-    
T Consensus       153 n~GGkqAL--e-aV~~llpvL~~a~~Ls~~qVVaIAsn~GGkQALeaV~~llpvl~~~~~Ls~aqVVaIAsn~GGk----  225 (463)
T 4hpz_A          153 NIGGKQAL--E-TVQRLLPVLCQDHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK----  225 (463)
T ss_dssp             STTHHHHH--H-HHHHHHHHHHHHHCCCHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSTTHH----
T ss_pred             cCccHHHH--H-HHHHHHHHHhhhcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhhccccCCHHHHHHHhhccccH----
Confidence            54332111  1 2333444454 3899999998876533211101234444566655 899999998876533211    


Q ss_pred             hhccCCCCCCcccccccchhHHHHHHHH-HhCCCcchhhHHHHHHHHhhcc-----HHHHHHHHHHHH-cCCCHHHHHHH
Q 040691          411 VMGCRLKPLPRLQLKEEESDTLKAEFLL-EVGFEENSKQFETALKDLRTRA-----RDLRERFDLIVE-AGLERKDVCDM  483 (585)
Q Consensus       411 ~~g~~~~~~~~~~~~~~~~~~~k~~fL~-~lG~~e~~~~~~~al~~~~~~~-----~~l~~rv~fL~~-~G~s~~~v~~m  483 (585)
                                    .-.+.+......|. ..||+..     +...+-...+     +.+++-.--|.+ .||+.++|..|
T Consensus       226 --------------QALeaV~~llpvl~~~~gls~a-----qVVaIAsn~GGkQALeaV~~llP~L~~~~gls~~qVVaI  286 (463)
T 4hpz_A          226 --------------QALETVQRLLPVLCQDHGLTPQ-----QVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAI  286 (463)
T ss_dssp             --------------HHHHHHHHHHHHHHHHSCCCHH-----HHHHHHSSTTHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             --------------HHHHHHHhhhhhhhhhccCCHH-----HHHHHhcccchHHHHHHHHhhchhhhhccCCCHHHhhhh
Confidence                          01122222223332 3466642     1111111111     345555666664 79999998865


Q ss_pred             HHhcCcccccCHHHHHHHHHHHHHhcCCCccccc
Q 040691          484 VRVAPLILKQKKEVLKTKIDYFVNDFGYPISSLK  517 (585)
Q Consensus       484 I~~~P~iL~~s~e~L~~ki~fL~~~mg~~~~~l~  517 (585)
                      -...--  .+-.|.++.-.--|+...|++.++++
T Consensus       287 AsN~GG--kQALeaV~~l~p~Lr~~~~ls~~qVV  318 (463)
T 4hpz_A          287 ASNDGG--KQALETVQRLLPVLCQDHGLTPEQVV  318 (463)
T ss_dssp             HTSTTH--HHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             hcCccH--HHHHHHHHHHhHHHHhhcCCCHHHhh
Confidence            442210  01122233333334444566666543

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=82.54  E-value=13  Score=31.94  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=20.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHH
Q 040691          277 FLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLL  318 (585)
Q Consensus       277 ~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~  318 (585)
                      .+.-|.++||+.+.+.+.+..+-        +++...+++|.
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~  112 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLM  112 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence            45666666777777666666552        24555555554

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=80.27  E-value=2.7  Score=43.67  Aligned_cols=117  Identities=18%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHhCCcccccCccccHHHHHHHHHhcCCChhHHHHHHhhCCce--e-ecc-cccchhHH
Q 040691          274 MFSFLSFCSKIGCSEEQLRILIRQHPEILFEDSGNMALSLVGFLLKFGTSMNEICLMFQQFPQI--K-LGE-FFTNLRQC  349 (585)
Q Consensus       274 l~~~l~fL~~lG~s~~~I~~ii~~~P~lL~~~~e~~L~p~v~fL~~lG~~~~~i~~vl~~~P~l--L-~~s-~e~~l~p~  349 (585)
                      ....|.-|.++||+.+++.+.++.        ..++....++||.+ |+.......  ...|.-  . ... ....-..-
T Consensus       168 ~~~~i~~l~~MGf~~~~~~~AL~a--------~~nn~~~A~e~L~~-gip~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 1oqy_A          168 YETMLTEIMSMGYERERVVAALRA--------SYNNPHRAVEYLLT-GIPGSPEPE--HGSVQESQVSEQPATEAAGENP  236 (368)
T ss_dssp             HHHHHHHHHTTTCCSHHHHHHHHH--------SCSSTTHHHHTTTT-SSTTCSSCC--CCCCCCCCSSCCCCSSCCSCCT
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHH--------cCCCHHHHHHHHHh-CCCcccccc--cCCccccccccccCccccccch
Confidence            455677777777777777777652        23466666777753 343210000  000000  0 000 00000012


Q ss_pred             HHHHHhh-hhchHHHHHHHHhCCcccccCcccchHHHHHHhCCChhHHHHHHHhCchhhHhhh
Q 040691          350 VVFLNEI-EMEAKEIGNIVRTHPVLLGTCALKKTSSLLTILKVGRKRLCAIILEDPQEMKKWV  411 (585)
Q Consensus       350 v~fL~~l-G~~~~~I~~il~~~P~iL~~~~lk~~v~~L~~lGl~~~~l~~ii~~~P~~L~~~~  411 (585)
                      ++||+.- -|  .++..+|..+|.+|-        .+|..+|-..-++..+|..+|+.|....
T Consensus       237 l~~Lr~~pqf--~~lR~~vq~nP~~l~--------~~lq~l~~~nP~l~~~I~~n~~~Fl~~l  289 (368)
T 1oqy_A          237 LEFLRDQPQF--QNMRQVIQQNPALLP--------ALLQQLGQENPQLLQQISRHQEQFIQML  289 (368)
T ss_dssp             THHHHHSHHH--HHHHHSTTTCTTHHH--------HHHTTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcChHH--HHHHHHHHhChHHHH--------HHHHHHHhhCHHHHHHHHHCHHHHHHHH
Confidence            3555431 11  566777777777773        5677888888899999999998876544

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00