Citrus Sinensis ID: 040747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
NGDVFDHDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEccEEEEEccccccccccEEEEEEcccccccccccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEEccccccccccHHccccccEEEEEcccccccccccccccccccccEEEccccccEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
ngdvfdhdlislppcfrfsptDEELLVLFLRRKvagrrlsinfiteidfykfepwelpskalfgdyewfffspmdrknpeasepnrvtgvgywedagsgtdKIITTAGrklagnapngiktEWIMHEYRliephpnndssklddwilcrisqcrgss
Flexible Loop (DISEMBL)
ngdvfdhdlislppcfrfspTDEELLVLFLRrkvagrrlsinfiteidfykfePWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITtagrklagnapnGIKTEWIMHEYRLIEPhpnndssklddWILCRISQCRGSS
Low Complexity Region (SEG)
NGDVFDHDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS
Disordered region (IsUnstruct)
****FDHDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFS**************VTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYRLIEP*******KLDDWILCRISQ*****
Disordered Region (DISOPRED)
***********LPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYR***************WILCRISQCR***
Disordered Region (DISEMBL)
NGDVFDHDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS
Disordered Region (DISPRO)
*********ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYRLIEPH**NDSSKLDDWILCRISQCR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NGDVFDHDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLAGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9LDY8	317	NAC domain-containing pro	yes	no	0.929	0.460	0.592	4e-49
Q93VY3	297	NAC domain-containing pro	no	no	0.885	0.468	0.626	2e-48
Q9C932	317	NAC domain-containing pro	no	no	0.929	0.460	0.585	2e-48
Q52QH4	318	NAC domain-containing pro	no	no	0.885	0.437	0.512	2e-38
Q39013	289	NAC domain-containing pro	no	no	0.942	0.512	0.493	8e-38
Q7F2L3	303	NAC domain-containing pro	no	no	0.929	0.481	0.503	3e-37
A0SPJ6	396	NAC transcription factor	N/A	no	0.872	0.345	0.472	5e-37
Q9C598	283	Protein ATAF2 OS=Arabidop	no	no	0.923	0.512	0.506	5e-37
Q8GY42	323	NAC transcription factor	no	no	0.917	0.445	0.488	1e-36
D2SMN4	406	NAC transcription factor	N/A	no	0.872	0.337	0.473	1e-36

>sp|Q9LDY8|NAC55_ARATH NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1

 Score =  193 bits (490), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+I+T GR++          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVISTEGRRVGIKKALVFYIGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSA 166

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 109/150 (72%), Gaps = 11/150 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG   S+  I +ID YKF+PW+LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKIIT  GR++         AG AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIITADGRRVGIKKALVFYAGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
           T WIMHEYRLIE   ++ SSKLDDW+LCRI
Sbjct: 130 TNWIMHEYRLIEHSRSHGSSKLDDWVLCRI 159

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C932|NAC19_ARATH NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 166

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 100/156 (64%), Gaps = 17/156 (10%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           ++LPP FRF PTDEEL+V +L RKVA + L +  I E+D YK +PW+LP KALFG  EW+
Sbjct: 19  LNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWY 78

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIIT------TAGRKLA-----GNAPNG 118
           FF+P DRK P  S PNR  G GYW+   +G DK +       T G K A     G AP G
Sbjct: 79  FFTPRDRKYPNGSRPNRAAGRGYWK--ATGADKPVAPKGSARTVGIKKALVFYSGKAPRG 136

Query: 119 IKTEWIMHEYRLIE----PHPNNDSSKLDDWILCRI 150
           +KT+WIMHEYRL +    P     S KLD+W+LCR+
Sbjct: 137 VKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRL 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39013|NAC2_ARATH NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2

 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 103/162 (63%), Gaps = 14/162 (8%)

Query: 8   DLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYE 67
           +L+ LPP FRF PTDEEL++ +L RK A + +++  I EID YK++PWELP  AL+G+ E
Sbjct: 3   ELLQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKE 62

Query: 68  WFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII---TTAGRK-----LAGNAPNGI 119
           W+FFSP DRK P  S PNR  G GYW+   +G DK I      G K      AG AP G 
Sbjct: 63  WYFFSPRDRKYPNGSRPNRSAGSGYWK--ATGADKPIGLPKPVGIKKALVFYAGKAPKGE 120

Query: 120 KTEWIMHEYRLIE----PHPNNDSSKLDDWILCRISQCRGSS 157
           KT WIMHEYRL +         +S +LDDW+LCRI   +G++
Sbjct: 121 KTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGAT 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q7F2L3|NAC48_ORYSJ NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 99/155 (63%), Gaps = 9/155 (5%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           + LPP FRF PTDEEL++ +L R+ AG  +++  I EID YKF+PW+LP  AL+G+ EW+
Sbjct: 7   LQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGEKEWY 66

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGS----GTDK--IITTAGRKLAGNAPNGIKTEW 123
           FFSP DRK P  S PNR  G GYW+  G+    G+ K   I  A    AG AP G KT W
Sbjct: 67  FFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGSPKPVAIKKALVFYAGKAPKGEKTNW 126

Query: 124 IMHEYRLIE---PHPNNDSSKLDDWILCRISQCRG 155
           IMHEYRL +        +S +LDDW+LCRI   +G
Sbjct: 127 IMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKG 161

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/165 (47%), Positives = 98/165 (59%), Gaps = 28/165 (16%)

Query: 12  LPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFF 71
           LPP FRF PTDEEL+V +L++K A   L +  ITE+D YKF+PWELP KA FG+ EW+FF
Sbjct: 28  LPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYFF 87

Query: 72  SPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAG---------RKLA---GNAPNGI 119
           SP DRK P  + PNR    GYW+   +GTDK I  +G         + L    G  P G+
Sbjct: 88  SPRDRKYPNGARPNRAATSGYWK--ATGTDKPILASGCGREKVGVKKALVFYRGKPPKGL 145

Query: 120 KTEWIMHEYRLIEPHPNNDSS--------------KLDDWILCRI 150
           KT WIMHEYRL +   +  +S              +LDDW+LCRI
Sbjct: 146 KTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRI 190

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.

Triticum durum (taxid: 4567)

>sp|Q9C598|NAC81_ARATH Protein ATAF2 OS=Arabidopsis thaliana GN=NAC081 PE=1 SV=1

 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 98/160 (61%), Gaps = 15/160 (9%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           ++LP  FRF PTDEEL+  +L RK A  ++S   I EID YKF PWELP  +L+G+ EW+
Sbjct: 5   LNLPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEKEWY 64

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII---TTAGRK-----LAGNAPNGIKT 121
           FFSP DRK P  S PNR  G GYW+   +G DK I    T G K      AG AP GIKT
Sbjct: 65  FFSPRDRKYPNGSRPNRAAGTGYWK--ATGADKPIGKPKTLGIKKALVFYAGKAPKGIKT 122

Query: 122 EWIMHEYRLIEPHPNNDSSK-----LDDWILCRISQCRGS 156
            WIMHEYRL     +   +K     LDDW+LCRI   +G+
Sbjct: 123 NWIMHEYRLANVDRSASVNKKNNLRLDDWVLCRIYNKKGT 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 101/168 (60%), Gaps = 24/168 (14%)

Query: 12  LPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFF 71
           LPP FRF PTDEEL+V +L++K     L ++ I EID YKF+PWELPSKA FG++EW+FF
Sbjct: 16  LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFF 75

Query: 72  SPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITT-----AGRKLA-----GNAPNGIKT 121
           SP DRK P    PNR    GYW+   +GTDK I T      G K A     G  P GIKT
Sbjct: 76  SPRDRKYPNGVRPNRAATSGYWK--ATGTDKPIFTCNSHKVGVKKALVFYGGKPPKGIKT 133

Query: 122 EWIMHEYRLIEPH------------PNNDSSKLDDWILCRISQCRGSS 157
           +WIMHEYRL + +               +S +LDDW+LCRI +   S 
Sbjct: 134 DWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQ 181

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 97/169 (57%), Gaps = 32/169 (18%)

Query: 12  LPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFF 71
           LPP FRF PTDEEL+V +L++K A   L +  I E+D YKF+PWELP KA FG++EW+FF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 72  SPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII----TTAGRKLA----------GNAPN 117
           SP DRK P  + PNR    GYW+   +GTDK I    T  GR+            G  P 
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWK--ATGTDKPILASATGCGREKVGVKKALVFYRGKPPR 152

Query: 118 GIKTEWIMHEYRLI----------EPHPNNDSS------KLDDWILCRI 150
           G+KT WIMHEYRL            P P    S      +LDDW+LCRI
Sbjct: 153 GLKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRI 201

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
302399005	336	NAC domain class transcription factor [M	0.929	0.434	0.611	3e-48
206584345	346	NAC domain protein NAC4 [Gossypium hirsu	0.885	0.401	0.64	8e-48
255586554	337	NAC domain-containing protein, putative	0.885	0.412	0.62	2e-47
297830130	317	ATNAC3 [Arabidopsis lyrata subsp. lyrata	0.929	0.460	0.592	2e-47
15232604	317	NAC domain-containing protein 55 [Arabid	0.929	0.460	0.592	2e-47
147802535	333	hypothetical protein VITISV_007842 [Viti	0.929	0.438	0.605	4e-47
225461361	333	PREDICTED: NAC domain-containing protein	0.929	0.438	0.605	4e-47
21536744	317	putative jasmonic acid regulatory protei	0.929	0.460	0.585	8e-47
18416983	297	NAC domain-containing protein 72 [Arabid	0.885	0.468	0.626	9e-47
15219112	317	NAC domain-containing protein 19 [Arabid	0.929	0.460	0.585	1e-46

>gi|302399005|gb|ADL36797.1| NAC domain class transcription factor [Malus x domestica]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/157 (61%), Positives = 113/157 (71%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG + ++  I EID YKF+PW LPSKA+FG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGYQFNLQIIAEIDLYKFDPWVLPSKAIFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+ITT G+K+          G AP GIK
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGTGYWK--ATGTDKVITTEGKKVGIKKALVFYVGKAPKGIK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N SSKLD+W+LCRI +   SS
Sbjct: 130 TNWIMHEYRLIEPSRKNGSSKLDEWVLCRIYKKSTSS 166

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|206584345|gb|ACI15345.1| NAC domain protein NAC4 [Gossypium hirsutum] gi|206584355|gb|ACI15350.1| NAC domain protein NAC4 [Gossypium hirsutum]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 107/150 (71%), Gaps = 11/150 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG   S+  I EID YKF PW+LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIGEIDLYKFNPWDLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKIITT GRK+          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIITTEGRKVGIKKALVFYVGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
           T WIMHEYRLIE    + SSKLDDW+LCRI
Sbjct: 130 TNWIMHEYRLIETSRKSGSSKLDDWVLCRI 159

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586554|ref|XP_002533913.1| NAC domain-containing protein, putative [Ricinus communis] gi|223526123|gb|EEF28468.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 108/150 (72%), Gaps = 11/150 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG + S+  I EID YKF+PW LPSKA+FG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGHQFSLQIIGEIDLYKFDPWVLPSKAIFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+ITT GRK+          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVITTEGRKVGIKKALVFYVGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
           T WIMHEYRL+E    N S+KLDDW+LCRI
Sbjct: 130 TNWIMHEYRLLESSRKNGSTKLDDWVLCRI 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830130|ref|XP_002882947.1| ATNAC3 [Arabidopsis lyrata subsp. lyrata] gi|297328787|gb|EFH59206.1| ATNAC3 [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+I+T GR++          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVISTEGRRVGIKKALVFYIGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232604|ref|NP_188169.1| NAC domain-containing protein 55 [Arabidopsis thaliana] gi|75273159|sp|Q9LDY8.1|NAC55_ARATH RecName: Full=NAC domain-containing protein 55; Short=ANAC055; AltName: Full=NAC domain-containing protein 3; Short=AtNAC3 gi|7021735|gb|AAF35416.1| putative jasmonic acid regulatory protein [Arabidopsis thaliana] gi|12060424|dbj|BAB20599.1| AtNAC3 [Arabidopsis thaliana] gi|15795115|dbj|BAB02379.1| jasmonic acid regulatory protein-like [Arabidopsis thaliana] gi|105830298|gb|ABF74720.1| At3g15500 [Arabidopsis thaliana] gi|332642162|gb|AEE75683.1| NAC domain-containing protein 55 [Arabidopsis thaliana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+I+T GR++          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVISTEGRRVGIKKALVFYIGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSA 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802535|emb|CAN62145.1| hypothetical protein VITISV_007842 [Vitis vinifera]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/157 (60%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG+  S+  I EID YKF+PW LPSKA+FG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGQGFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+ITT GRK+          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVITTEGRKVGIKKALVFYXGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRL+E    N SSKLDDW+LCRI +   +S
Sbjct: 130 TNWIMHEYRLLENSRKNGSSKLDDWVLCRIYKKNSNS 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461361|ref|XP_002284668.1| PREDICTED: NAC domain-containing protein 72 [Vitis vinifera] gi|302143055|emb|CBI20350.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/157 (60%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG+  S+  I EID YKF+PW LPSKA+FG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGQGFSLEIIGEIDLYKFDPWVLPSKAIFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+ITT GRK+          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVITTEGRKVGIKKALVFYVGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRL+E    N SSKLDDW+LCRI +   +S
Sbjct: 130 TNWIMHEYRLLENSRKNGSSKLDDWVLCRIYKKNSNS 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536744|gb|AAM61076.1| putative jasmonic acid regulatory protein [Arabidopsis thaliana]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 110/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDK+I+T GR++          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVISTEGRRVGIKKALVFYIGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+ LDDW+LCRI + + S+
Sbjct: 130 TNWIMHEYRLIEPSRRNGSTNLDDWVLCRIYKKQTSA 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416983|ref|NP_567773.1| NAC domain-containing protein 72 [Arabidopsis thaliana] gi|75163205|sp|Q93VY3.1|NAC72_ARATH RecName: Full=NAC domain-containing protein 72; Short=ANAC072; AltName: Full=Protein RESPONSIVE TO DESICCATION 26 gi|16226943|gb|AAL16305.1|AF428375_1 AT4g27410/F27G19_10 [Arabidopsis thaliana] gi|15982729|gb|AAL09817.1| unknown protein [Arabidopsis thaliana] gi|20259263|gb|AAM14367.1| unknown protein [Arabidopsis thaliana] gi|21593359|gb|AAM65308.1| unknown [Arabidopsis thaliana] gi|24417372|gb|AAN60296.1| unknown [Arabidopsis thaliana] gi|332659934|gb|AEE85334.1| NAC domain-containing protein 72 [Arabidopsis thaliana]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/150 (62%), Positives = 109/150 (72%), Gaps = 11/150 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEELLV +L RKVAG   S+  I +ID YKF+PW+LPSKALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKIIT  GR++         AG AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIITADGRRVGIKKALVFYAGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
           T WIMHEYRLIE   ++ SSKLDDW+LCRI
Sbjct: 130 TNWIMHEYRLIEHSRSHGSSKLDDWVLCRI 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219112|ref|NP_175697.1| NAC domain-containing protein 19 [Arabidopsis thaliana] gi|50401153|sp|Q9C932.1|NAC19_ARATH RecName: Full=NAC domain-containing protein 19; Short=ANAC019; AltName: Full=Abscisic-acid-responsive NAC; Short=ANAC gi|12324647|gb|AAG52283.1|AC019018_20 NAM-like protein; 67516-66364 [Arabidopsis thaliana] gi|17529068|gb|AAL38744.1| putative NAM protein [Arabidopsis thaliana] gi|21436105|gb|AAM51299.1| putative NAM protein [Arabidopsis thaliana] gi|332194743|gb|AEE32864.1| NAC domain-containing protein 19 [Arabidopsis thaliana]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct: 12  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 71

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct: 72  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 129

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2090176	317	NAC3 "NAC domain containing pr	0.885	0.438	0.613	3e-46
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.929	0.460	0.585	1e-45
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.942	0.512	0.493	4.9e-37
TAIR|locus:504956335	283	ATAF2 [Arabidopsis thaliana (t	0.923	0.512	0.506	3.5e-36
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.923	0.541	0.481	5.7e-36
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.917	0.569	0.484	7.2e-36
TAIR|locus:2160634	312	NAC102 "NAC domain containing	0.923	0.464	0.493	2.4e-35
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.764	0.334	0.485	5e-35
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.796	0.343	0.514	1.3e-34
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.885	0.220	0.467	2.9e-33

TAIR|locus:2090176 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 92/150 (61%), Positives = 107/150 (71%)

Query:    10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
             +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LPSKALFG+ EW+
Sbjct:    12 LSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLPSKALFGEKEWY 71

Query:    70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
             FFSP DRK P  S PNRV G GYW+   +GTDK+I+T GR++          G AP G K
Sbjct:    72 FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKVISTEGRRVGIKKALVFYIGKAPKGTK 129

Query:   121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
             T WIMHEYRLIEP   N S+KLDDW+LCRI
Sbjct:   130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRI 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 92/157 (58%), Positives = 111/157 (70%)

Query:    10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
             +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct:    12 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 71

Query:    70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
             FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct:    72 FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 129

Query:   121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
             T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct:   130 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 80/162 (49%), Positives = 103/162 (63%)

Query:     8 DLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYE 67
             +L+ LPP FRF PTDEEL++ +L RK A + +++  I EID YK++PWELP  AL+G+ E
Sbjct:     3 ELLQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKE 62

Query:    68 WFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII---TTAGRK-----LAGNAPNGI 119
             W+FFSP DRK P  S PNR  G GYW+   +G DK I      G K      AG AP G 
Sbjct:    63 WYFFSPRDRKYPNGSRPNRSAGSGYWK--ATGADKPIGLPKPVGIKKALVFYAGKAPKGE 120

Query:   120 KTEWIMHEYRLIEP----HPNNDSSKLDDWILCRISQCRGSS 157
             KT WIMHEYRL +         +S +LDDW+LCRI   +G++
Sbjct:   121 KTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGAT 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:504956335 ATAF2 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 81/160 (50%), Positives = 98/160 (61%)

Query:    10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
             ++LP  FRF PTDEEL+  +L RK A  ++S   I EID YKF PWELP  +L+G+ EW+
Sbjct:     5 LNLPAGFRFHPTDEELVKFYLCRKCASEQISAPVIAEIDLYKFNPWELPEMSLYGEKEWY 64

Query:    70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII---TTAGRK-----LAGNAPNGIKT 121
             FFSP DRK P  S PNR  G GYW+   +G DK I    T G K      AG AP GIKT
Sbjct:    65 FFSPRDRKYPNGSRPNRAAGTGYWK--ATGADKPIGKPKTLGIKKALVFYAGKAPKGIKT 122

Query:   122 EWIMHEYRLIEPHPNNDSSK-----LDDWILCRISQCRGS 156
              WIMHEYRL     +   +K     LDDW+LCRI   +G+
Sbjct:   123 NWIMHEYRLANVDRSASVNKKNNLRLDDWVLCRIYNKKGT 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009620 "response to fungus" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0043424 "protein histidine kinase binding" evidence=IPI

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 77/160 (48%), Positives = 100/160 (62%)

Query:    11 SLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFF 70
             +LPP FRF PTDEEL+V +LR +   +   ++ I E+D YKF+PW+LP K  FG+ EW+F
Sbjct:     8 TLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYF 67

Query:    71 FSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII----TTAGRKLA-----GNAPNGIKT 121
             FSP +RK P    PNR    GYW+   +GTDK I    +  G K A     G  P GIKT
Sbjct:    68 FSPRERKYPNGVRPNRAAVSGYWK--ATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKT 125

Query:   122 EWIMHEYRLIEPHP----NNDSSKLDDWILCRISQCRGSS 157
             +WIMHEYRL +        N S +LD+W+LCRI + RG+S
Sbjct:   126 DWIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIYKKRGAS 165

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 76/157 (48%), Positives = 99/157 (63%)

Query:    10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
             +  PP FRF PTDEEL++++L RK A + +    ITE+D Y+++PW+LP  AL+G+ EW+
Sbjct:     8 LQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKEWY 67

Query:    70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII---TTAGRKLA-----GNAPNGIKT 121
             FFSP DRK P  S PNR  G GYW+   +G DK I      G K A     G  PNG KT
Sbjct:    68 FFSPRDRKYPNGSRPNRAAGTGYWK--ATGADKPIGRPKPVGIKKALVFYSGKPPNGEKT 125

Query:   122 EWIMHEYRLIEPHPN---NDSSKLDDWILCRISQCRG 155
              WIMHEYRL +   +    +S +LDDW+LCRI   +G
Sbjct:   126 NWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKG 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2160634 NAC102 "NAC domain containing protein 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 79/160 (49%), Positives = 98/160 (61%)

Query:    10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
             ++LP  FRF PTDEEL+  +L R+ A   +++  I EID YKF PWELP  AL+G+ EW+
Sbjct:    48 LNLPAGFRFHPTDEELVKFYLCRRCASEPINVPVIAEIDLYKFNPWELPEMALYGEKEWY 107

Query:    70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKII---TTAGRK-----LAGNAPNGIKT 121
             FFS  DRK P  S PNR  G GYW+   +G DK I    T G K      AG AP GIKT
Sbjct:   108 FFSHRDRKYPNGSRPNRAAGTGYWK--ATGADKPIGKPKTLGIKKALVFYAGKAPKGIKT 165

Query:   122 EWIMHEYRLIEPHPNNDSSK-----LDDWILCRISQCRGS 156
              WIMHEYRL     +  ++K     LDDW+LCRI   +G+
Sbjct:   166 NWIMHEYRLANVDRSASTNKKNNLRLDDWVLCRIYNKKGT 205

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 66/136 (48%), Positives = 87/136 (63%)

Query:    11 SLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFF 70
             SLPP FRF PTDEEL++ +LR+KV+   + ++ I ++D YK +PW+LP+KA FG+ EW+F
Sbjct:     9 SLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYF 68

Query:    71 FSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTA---------GRKLA-----GNAP 116
             FSP DRK P  + PNR    GYW+   +GTDK+I            G K A     G  P
Sbjct:    69 FSPRDRKYPNGARPNRAAASGYWK--ATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPP 126

Query:   117 NGIKTEWIMHEYRLIE 132
              G+KT WIMHEYRL +
Sbjct:   127 KGVKTNWIMHEYRLAD 142

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 71/138 (51%), Positives = 92/138 (66%)

Query:    11 SLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFF 70
             +LPP FRF PTDEEL+V +L+RK A   L +  I E+D YKF+PWELP+KA FG+ EW+F
Sbjct:    16 NLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYF 75

Query:    71 FSPMDRKNPEASEPNRVTGVGYWEDAGSGTDK-IITTAGRK----------LAGNAPNGI 119
             FSP DRK P  + PNR    GYW+   +GTDK ++ + G +           +G  P G+
Sbjct:    76 FSPRDRKYPNGARPNRAATSGYWK--ATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGV 133

Query:   120 KTEWIMHEYRLIEPHPNN 137
             K++WIMHEYRLIE  PNN
Sbjct:   134 KSDWIMHEYRLIENKPNN 151

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 2.9e-33, P = 2.9e-33
 Identities = 71/152 (46%), Positives = 96/152 (63%)

Query:    10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFG--DYE 67
             +S+PP FRF PTDEEL++ +L+RK+ GR + +  I EID YK EPW+LP K+L    D E
Sbjct:     4 VSMPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPGKSLLPSKDLE 63

Query:    68 WFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNG 118
             WFFFSP DRK P  S  NR T  GYW+   +G D+ +T+  R +          G AP+G
Sbjct:    64 WFFFSPRDRKYPNGSRTNRATKAGYWK--ATGKDRKVTSHSRMVGTKKTLVYYRGRAPHG 121

Query:   119 IKTEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
              +T+W+MHEYRL E   ++ S   D + LCR+
Sbjct:   122 SRTDWVMHEYRLEEQECDSKSGIQDAYALCRV 153

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ANAC055	ANAC055 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor; Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note- this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3. ; Transcription factors that bind specifically to the 5'- CATGTG-3' motif (317 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ZFHD1	ZFHD1 (ZINC FINGER HOMEODOMAIN 1); DNA binding / transcription activator/ transcription factor; [...] (242 aa)					•		•		0.946
	TPR3	TPR3 (TOPLESS-RELATED 3); TOPLESS-RELATED 3 (TPR3); INVOLVED IN- primary shoot apical meristem [...] (1108 aa)					•				0.770
	AZF2	AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); DNA binding / nucleic acid binding / transcription fa [...] (273 aa)				•			•		0.673
	AT2G31945	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (95 aa)				•					0.669
	RHA2A	RHA2A; protein binding / ubiquitin-protein ligase/ zinc ion binding; Encodes a putative RING-H2 [...] (155 aa)							•		0.659
	ATNAC6	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6); protein heterodimerization/ protein homod [...] (285 aa)				•			•	•	0.630
	ANAC019	ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor; encodes a NAC tra [...] (317 aa)				•			•	•	0.595
	NAP	NAP (NAC-like, activated by AP3/PI); transcription factor; Encodes a member of the NAC transcri [...] (268 aa)				•			•	•	0.595
	ATERF-1	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription activator/ [...] (268 aa)				•			•		0.584
	AT5G24640	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (118 aa)				•			•		0.579

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	4e-51

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  159 bits (404), Expect = 4e-51
 Identities = 69/132 (52%), Positives = 86/132 (65%), Gaps = 14/132 (10%)

Query: 12  LPPCFRFSPTDEELLVLFLRRKVAGRRLSI-NFITEIDFYKFEPWELP-SKALFGDYEWF 69
           LPP FRF PTDEEL+V +L+RKV G+ L + + I E+D YKFEPW+LP  KA  GD EW+
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKL----------AGNAPNGI 119
           FFSP DRK P  S  NR TG GYW+   +G DK + + G ++           G AP G 
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWK--ATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGE 118

Query: 120 KTEWIMHEYRLI 131
           KT+W+MHEYRL 
Sbjct: 119 KTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=8.2e-43  Score=252.98  Aligned_cols=118  Identities=52%  Similarity=1.027  Sum_probs=82.5

Q ss_pred             CCCCceecCCHHHHHHHHHHHHHcCCCCCC-CeeEeccCCCCCCCCCCccccCCceEEEEEcccCCCCCCCCCCcccCcc
Q 040747           12 LPPCFRFSPTDEELLVLFLRRKVAGRRLSI-NFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGV   90 (157)
Q Consensus        12 lP~G~rF~PtDeELi~~yL~~k~~g~~~~~-~~I~~~Dvy~~~P~~Lp~~~~~~~~~wyFF~~~~~k~~~g~R~~r~~~~   90 (157)
                      |||||||+|||+|||.+||++|+.|.+++. ++|+++|||++|||+|+.....++++||||+++++++.++.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999887 7999999999999999954344577999999999999999999999999


Q ss_pred             ceeeecCCCCceEEec-CCeEE---------ecCCCCCCCcceEEEEEeeC
Q 040747           91 GYWEDAGSGTDKIITT-AGRKL---------AGNAPNGIKTEWIMHEYRLI  131 (157)
Q Consensus        91 G~Wk~~~~g~~~~i~~-~g~~~---------~g~~~~~~kt~W~M~EY~l~  131 (157)
                      |+||.  +|+.+.|.. .|..+         .++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~--~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKS--TGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEE--ECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEee--cccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999  777766665 55433         45677889999999999983

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	157
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		4e-49
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		4e-49
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		4e-39

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)
Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132
Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)
Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 135
Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 172

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 99/155 (63%), Gaps = 16/155 (10%)
Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           ++LPP FRF PTD+EL+  +L RK AG+RL +  I E+D YKF+PW+LP +ALFG  EW+
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIK 120
           FF+P DRK P  S PNR  G GYW+   +G DK +   GR L         AG AP G+K
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWK--ATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130
Query: 121 TEWIMHEYRL-----IEPHPNNDSSKLDDWILCRI 150
           T+WIMHEYRL             S +LDDW+LCR+
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1ut7_A	171	No apical meristem protein; transcription regulati	2e-68
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-65

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  203 bits (519), Expect = 2e-68
 Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
           T WIMHEYRLIEP   N S+KLDDW+LCRI + + S+
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  196 bits (501), Expect = 1e-65
 Identities = 77/155 (49%), Positives = 99/155 (63%), Gaps = 16/155 (10%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           ++LPP FRF PTD+EL+  +L RK AG+RL +  I E+D YKF+PW+LP +ALFG  EW+
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FF+P DRK P  S PNR  G GYW+   +G DK +   GR L          G AP G+K
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWK--ATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130

Query: 121 TEWIMHEYRLIE-----PHPNNDSSKLDDWILCRI 150
           T+WIMHEYRL +           S +LDDW+LCR+
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=3.3e-56  Score=336.38  Aligned_cols=148  Identities=53%  Similarity=1.092  Sum_probs=124.2

Q ss_pred             CCCCCCCCCceecCCHHHHHHHHHHHHHcCCCCCCCeeEeccCCCCCCCCCCccccCCceEEEEEcccCCCCCCCCCCcc
Q 040747            7 HDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNR   86 (157)
Q Consensus         7 ~~~~~lP~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~wyFF~~~~~k~~~g~R~~r   86 (157)
                      ..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..++.+|||||++++|+++|.|.+|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            35779999999999999999999999999999999999999999999999999887788999999999999999999999


Q ss_pred             cCccceeeecCCCCceEEecCCeEE---------ecCCCCCCCcceEEEEEeeCCCCCCC-----CCCCCCCEEEEEEEe
Q 040747           87 VTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIKTEWIMHEYRLIEPHPNN-----DSSKLDDWILCRISQ  152 (157)
Q Consensus        87 ~~~~G~Wk~~~~g~~~~i~~~g~~~---------~g~~~~~~kt~W~M~EY~l~~~~~~~-----~~~~~~~~VLCkI~~  152 (157)
                      ++++|+||+  +|+++.|...|..+         .|+++++.||+|+||||+|.......     +....++|||||||+
T Consensus        90 ~t~~G~Wka--tG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           90 AAGNGYWKA--TGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             EETTEEEEE--CSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             ecCCceEcc--CCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            999999999  88999887665332         67888999999999999999864321     224568999999999


Q ss_pred             ccCC
Q 040747          153 CRGS  156 (157)
Q Consensus       153 k~~~  156 (157)
                      |++.
T Consensus       168 K~~~  171 (174)
T 3ulx_A          168 KKNE  171 (174)
T ss_dssp             SCC-
T ss_pred             cCCC
Confidence            9864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.5e-56  Score=336.62  Aligned_cols=148  Identities=62%  Similarity=1.168  Sum_probs=121.3

Q ss_pred             CCCCCCCCCceecCCHHHHHHHHHHHHHcCCCCCCCeeEeccCCCCCCCCCCccccCCceEEEEEcccCCCCCCCCCCcc
Q 040747            7 HDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNR   86 (157)
Q Consensus         7 ~~~~~lP~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~wyFF~~~~~k~~~g~R~~r   86 (157)
                      ..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+.+..++++|||||++++++++|.|.+|
T Consensus        12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R   91 (171)
T 1ut7_A           12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR   91 (171)
T ss_dssp             CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred             ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence            45789999999999999999999999999999999999999999999999999887788999999999999999999999


Q ss_pred             cCccceeeecCCCCceEEecCCeEE---------ecCCCCCCCcceEEEEEeeCCCCCCCCCCCCCCEEEEEEEeccCC
Q 040747           87 VTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGS  156 (157)
Q Consensus        87 ~~~~G~Wk~~~~g~~~~i~~~g~~~---------~g~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~~VLCkI~~k~~~  156 (157)
                      ++++|+||+  +|+++.|...|..+         .|+++++.||+|+||||+|.......+....++|||||||+|+.+
T Consensus        92 ~t~~G~Wk~--tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           92 VAGSGYWKA--TGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             EETTEEEEE--EEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             cCCCCEEec--cCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            999999999  88888887766443         678889999999999999998754333356789999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	6e-55

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  168 bits (426), Expect = 6e-55
 Identities = 91/150 (60%), Positives = 107/150 (71%), Gaps = 11/150 (7%)

Query: 10  ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
           +SLPP FRF PTDEEL+V +L RK AG   S+  I EID YKF+PW LP+KALFG+ EW+
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 70  FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
           FFSP DRK P  S PNRV G GYW+   +GTDKII+T G+++          G AP G K
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132

Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRI 150
           T WIMHEYRLIEP   N S+KLDDW+LCRI
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRI 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.9e-55  Score=325.57  Aligned_cols=147  Identities=62%  Similarity=1.168  Sum_probs=121.0

Q ss_pred             CCCCCCCCCCceecCCHHHHHHHHHHHHHcCCCCCCCeeEeccCCCCCCCCCCccccCCceEEEEEcccCCCCCCCCCCc
Q 040747            6 DHDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPN   85 (157)
Q Consensus         6 ~~~~~~lP~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~wyFF~~~~~k~~~g~R~~   85 (157)
                      ...+++|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..++++|||||+++++++++.|.+
T Consensus        11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccc
Confidence            45688999999999999999999999999999999999999999999999999987777889999999999999999999


Q ss_pred             ccCccceeeecCCCCceEEecCCeEE---------ecCCCCCCCcceEEEEEeeCCCCCCCCCCCCCCEEEEEEEecc
Q 040747           86 RVTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCR  154 (157)
Q Consensus        86 r~~~~G~Wk~~~~g~~~~i~~~g~~~---------~g~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~~VLCkI~~k~  154 (157)
                      |++++|+||.  +|++++|..+|..+         .++++++.+|+|+||||+|.+....++....++|||||||+|+
T Consensus        91 R~~g~G~Wk~--~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          91 RVAGSGYWKA--TGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EEETTEEEEE--EEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cccCCCEecc--cCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            9999999999  77888888777654         5778889999999999999988766556677899999999985