Citrus Sinensis ID: 040751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
INFAKMSSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILDFN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHHcccHHcccccccccHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccEEEcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHccccccc
Coil and Loop (DISEMBL)
infakmssvsietgeaplldstgeisqsqmdpKFFKaaadgnvepfKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLlqvnakgdtplhvaakfgHSGIVTFLVEraklpqheneeleSGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILtkedpdyrysanndgktplymaaesRSSDMVLALLENstsvshegpngktALHAAAMKFDLVDTALRKLLEKKENLIketdqygwtpihYAAYHGMYWINRFYGNYGTVNLLLETdqsasniadkDRKMTALHLAAGQGNAEIVDAIIsknpecyelvdnrgwnFLHYAVVTRSLinegdamgntpLHVLAAVRRNEFYDVMIRNTQVnydavnkqnvsvEHILDyehildfn
Flexible Loop (DISEMBL)
infakmssvsietgeaplldstgeisqSQMDPKFFKAAADGNVEPFKDMAREKIESlltaktrntilhiniiskerenVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILtkedpdyrysanndgktpLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKenliketdqygwtPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVnydavnkqnvsvEHILDYEHILDFN
Low Complexity Region (SEG)
INFAKMSSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAlrkllekkenlikeTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILDFN
Disordered region (IsUnstruct)
*****************************************************IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA*****************************TALHEAVCHKNVDVVKILTKEDPDY*******************************************ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETD***********KMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD**
Disordered Region (DISOPRED)
******SSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD**
Disordered Region (DISEMBL)
INFAKMSSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILDFN
Disordered Region (DISPRO)
INFAKMSSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
INFAKMSSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILDFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.693	0.150	0.317	2e-18
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.693	0.149	0.307	2e-17
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.565	0.437	0.321	4e-16
Q9ERK0	786	Receptor-interacting seri	no	no	0.520	0.268	0.304	6e-14
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.654	0.187	0.275	1e-13
P57078	832	Receptor-interacting seri	no	no	0.528	0.257	0.284	2e-13
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.565	0.057	0.292	2e-13
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.728	0.150	0.274	2e-13
Q8N8A2	993	Serine/threonine-protein	no	no	0.622	0.253	0.268	2e-13
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.792	0.227	0.257	6e-13

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 148/328 (45%), Gaps = 47/328 (14%)

Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
           V E+L K  + +  V   G TPLHVA+  GH  IV  L++R   P   N ++E       
Sbjct: 382 VMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE------- 434

Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
                      T LH A    + +V K L +        A +D +TPL+ AA    + MV
Sbjct: 435 -----------TPLHMAARAGHTEVAKYLLQNKAKANAKAKDD-QTPLHCAARIGHTGMV 482

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA 263
             LLEN  S +     G T LH AA +   VDTAL  LLEK+ +    T + G+TP+H A
Sbjct: 483 KLLLENGASPNLATTAGHTPLHTAAREGH-VDTAL-ALLEKEASQACMTKK-GFTPLHVA 539

Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
           A          YG      LLLE D +  N A K+  +T LH+A    N +IV  ++ + 
Sbjct: 540 AK---------YGKVRLAELLLEHD-AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRG 588

Query: 324 PECYELVDNRGWNFLHYAV------VTRSLINEGDA------MGNTPLHVLAAVRRNEFY 371
              +    N G+  LH A       V RSL+  G +       G TPLH+ A     E  
Sbjct: 589 GSPHSPAWN-GYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMV 647

Query: 372 DVMIRNTQVNYDAVNKQNVSVEHILDYE 399
            +++ + Q N +  NK  ++  H++  E
Sbjct: 648 ALLL-SKQANGNLGNKSGLTPLHLVSQE 674

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 149/328 (45%), Gaps = 47/328 (14%)

Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
           V E+L K  + +  V   G TPLHVA+  GH  IV  L++R   P   N ++E       
Sbjct: 386 VMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE------- 438

Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
                      T LH A    + +V K L +        A +D +TPL+ AA    ++MV
Sbjct: 439 -----------TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNMV 486

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA 263
             LLEN+ + +     G T LH AA +   V+T L  LLEK+ +    T + G+TP+H A
Sbjct: 487 KLLLENNANPNLATTAGHTPLHIAAREGH-VETVL-ALLEKEASQACMTKK-GFTPLHVA 543

Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
           A          YG      LLLE D +  N A K+  +T LH+A    N +IV  ++ + 
Sbjct: 544 AK---------YGKVRVAELLLERD-AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRG 592

Query: 324 PECYELVDNRGWNFLHYAV------VTRSLINEGDA------MGNTPLHVLAAVRRNEFY 371
              +    N G+  LH A       V RSL+  G +       G TPLH+ A     E  
Sbjct: 593 GSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 651

Query: 372 DVMIRNTQVNYDAVNKQNVSVEHILDYE 399
            +++ + Q N +  NK  ++  H++  E
Sbjct: 652 ALLL-SKQANGNLGNKSGLTPLHLVAQE 678

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 113/261 (43%), Gaps = 32/261 (12%)

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKED-----PDYRYSANNDGKTPLYMAAESRSSD 201
           +MT    +T LH AV     D++  +  E       +     N  G+T LY+AAE   +D
Sbjct: 11  QMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTD 70

Query: 202 MVLALLENSTSV--SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTP 259
           MV  L+++S SV    +  NG  A H AA   +L    L  L+E    L    D    T 
Sbjct: 71  MVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNL--QVLDVLIEANPELSFTFDSSKTTA 128

Query: 260 IHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
           +H AA  G   I         V  LL+     + IA  + K TALH AA  G+  IV  +
Sbjct: 129 LHTAASQGHGEI---------VCFLLDKGVDLAAIARSNGK-TALHSAARNGHTVIVKKL 178

Query: 320 ISKNPECYELVDNRGWNFLHYAVVTR-------------SLINEGDAMGNTPLHVLAAVR 366
           I K       VD +G   LH AV  +             SLIN  D  GNTPLH+     
Sbjct: 179 IEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKN 238

Query: 367 RNEFYDVMIRNTQVNYDAVNK 387
           R E    +++  +V+  AVNK
Sbjct: 239 RAEIVQTVLKYCEVSRVAVNK 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ERK0|RIPK4_MOUSE Receptor-interacting serine/threonine-protein kinase 4 OS=Mus musculus GN=Ripk4 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 122/253 (48%), Gaps = 42/253 (16%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
           +V+ +G TP+HVA + G   IV  L+ R             GV      + +   +    
Sbjct: 534 EVDFEGRTPMHVACQHGQENIVRTLLRR-------------GVD-----VGLQGKDAWLP 575

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANN-DGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           LH A    ++ +VK+L K+ P    +A   DG+TPL++AA+     +   L++  + V+ 
Sbjct: 576 LHYAAWQGHLPIVKLLAKQ-PGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDVNI 634

Query: 216 EGPNGKTALHAAAMKFDLVDTALRKLLEK---KENLIKETDQYGWTPIHYAAYHGMYWIN 272
                +T LH AA +     TA R LL +   KE L  E    G+T +H AA +G     
Sbjct: 635 CSLQAQTPLHVAA-ETGHTSTA-RLLLHRGAGKEALTSE----GYTALHLAAQNG----- 683

Query: 273 RFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
               +  TV LL+E  + A  +A      TALHLAA +G++E+V+ ++S +    +L D 
Sbjct: 684 ----HLATVKLLIE--EKADVMARGPLNQTALHLAAARGHSEVVEELVSAD--LIDLSDE 735

Query: 333 RGWNFLHYAVVTR 345
           +G + LH A   R
Sbjct: 736 QGLSALHLAAQGR 748

Involved in stratified epithelial development (By similarity). It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 144/334 (43%), Gaps = 69/334 (20%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
           +A G TPLH AA  G+  +V FL+ +    Q+ N      + AA      T  +K T LH
Sbjct: 665 DANGMTPLHYAAMTGNLEMVDFLLNQ----QYIN------INAA------TKEKKWTPLH 708

Query: 159 EAVCHKNVDVV-KILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217
            A+  K  DV  ++L+ E+ + R   N  G  PL++A+ + +  +V+ LL  +  V+   
Sbjct: 709 LAILFKKNDVAERLLSDENLNIRLETNG-GINPLHLASATGNKQLVIELLAKNADVTRLT 767

Query: 218 PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
             G +ALH   +  +  +     L+EK  N+  +T+  G TP+H+AA  G   I R   +
Sbjct: 768 SKGFSALHLGIIGKN--EEIPFFLVEKGANVNDKTNS-GVTPLHFAAGLGKANIFRLLLS 824

Query: 278 YGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPEC----------- 326
            G        D  A +I  +      +H A   G+ EIV  +I K+P             
Sbjct: 825 RG-------ADIKAEDINSQ----MPIHEAVSNGHLEIVRILIEKDPSLMNVKNIRNEYP 873

Query: 327 -YELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAV-------------------- 365
            Y  V+ R  +   Y V   + +NE D  GNT LH+ ++                     
Sbjct: 874 FYLAVEKRYKDIFDYFVSKDANVNEVDHNGNTLLHLFSSTGELEVVQFLMQNGANFRLKN 933

Query: 366 -RRNEFYDVMIRNTQVNYDAV----NKQNVSVEH 394
             R  F+D+ I N ++N  A     NK N+   H
Sbjct: 934 NERKTFFDLAIENGRLNIVAFAVEKNKVNLQAAH 967

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|P57078|RIPK4_HUMAN Receptor-interacting serine/threonine-protein kinase 4 OS=Homo sapiens GN=RIPK4 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 36/250 (14%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
           +V+ +G TP+HVA + G   IV  L+ R             GV      + +   +    
Sbjct: 580 EVDFEGRTPMHVACQHGQENIVRILLRR-------------GVD-----VSLQGKDAWLP 621

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANN-DGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           LH A    ++ +VK+L K+ P    +A   DG+TPL++AA+     +   L++  + V+ 
Sbjct: 622 LHYAAWQGHLPIVKLLAKQ-PGVSVNAQTLDGRTPLHLAAQRGHYRVARILIDLCSDVNV 680

Query: 216 EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY 275
                +T LH AA   +   T+  +LL  +    +     G+T +H AA +G        
Sbjct: 681 CSLLAQTPLHVAA---ETGHTSTARLLLHRGAGKEAMTSDGYTALHLAARNG-------- 729

Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
            +  TV LL+E  + A  +A      TALHLAA  G++E+V+ ++S +    +L D +G 
Sbjct: 730 -HLATVKLLVE--EKADVLARGPLNQTALHLAAAHGHSEVVEELVSAD--VIDLFDEQGL 784

Query: 336 NFLHYAVVTR 345
           + LH A   R
Sbjct: 785 SALHLAAQGR 794

Involved in stratified epithelial development. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 128/318 (40%), Gaps = 89/318 (27%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
            N  G   LH+AAK GH G+V  L+ R            S V +A         + NTAL
Sbjct: 60  CNQNGLNALHLAAKEGHVGLVQELLGRG-----------SSVDSA-------TKKGNTAL 101

Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217
           H A      +VVK+L KE  +    + N G TPLYMAA+    D+V  LLEN  + S   
Sbjct: 102 HIASLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQENHIDVVKYLLENGANQSTAT 160

Query: 218 PNGKT-----------------------------ALHAAAMKFDLVDTALRKLLEKKEN- 247
            +G T                             ALH AA K D    AL  LL+   N 
Sbjct: 161 EDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAAL--LLQNDHNA 218

Query: 248 ------LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE----TDQSASNIADK 297
                 ++  T + G+TP+H AA+         YGN     LLL      D +A N    
Sbjct: 219 DVQSKMMVNRTTESGFTPLHIAAH---------YGNVNVATLLLNRGAAVDFTARN---- 265

Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEG 351
              +T LH+A+ +GN  +V  ++ +  +  +     G   LH A       V   L+  G
Sbjct: 266 --GITPLHVASKRGNTNMVKLLLDRGGQ-IDAKTRDGLTPLHCAARSGHDQVVELLLERG 322

Query: 352 DAM------GNTPLHVLA 363
             +      G +PLH+ A
Sbjct: 323 APLLARTKNGLSPLHMAA 340

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 145/339 (42%), Gaps = 44/339 (12%)

Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVG-AA 142
           V E+L K  + +  V   G TP+HVAA  GH  IV+ L+     P   N   E+ +  AA
Sbjct: 398 VMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAA 457

Query: 143 RQ--------------MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK 188
           R                ++    +  T LH +      D+V+ L ++      +A   G 
Sbjct: 458 RSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPN-AATTSGY 516

Query: 189 TPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL 248
           TPL++AA     D+   LL++  S+S     G T LH AA K+  ++ A   LL +K   
Sbjct: 517 TPLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAA-KYGKLEVA--SLLLQKSAS 573

Query: 249 IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308
                + G TP+H AA+         Y N     LLL  DQ AS  A      T LH+AA
Sbjct: 574 PDAAGKSGLTPLHVAAH---------YDNQKVALLLL--DQGASPHAAAKNGYTPLHIAA 622

Query: 309 GQGNAEIVDAIISKNPECYELVDNRGWNFLHYA-----------VVTRSL-INEGDAMGN 356
            +   +I  +++    +    V  +G   +H A           +++R+  +N  +  G 
Sbjct: 623 KKNQMDIATSLLEYGADA-NAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNLSNKSGL 681

Query: 357 TPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
           TPLH+ A   R    +V++ N   + DA  K   +  H+
Sbjct: 682 TPLHLAAQEDRVNVAEVLV-NQGAHVDAQTKMGYTPLHV 719

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 133/316 (42%), Gaps = 64/316 (20%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLV----ERAKLPQHEN-----EELESGVGAARQM--- 145
           V+  G+TPLHVAA++GH  ++  L+    + AK   H         L +     R++   
Sbjct: 335 VDKDGNTPLHVAARYGHELLINTLITSGADTAKCGIHSMFPLHLAALNAHSDCCRKLLSS 394

Query: 146 ---IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
              I   +    T LH A    NV+ +K+L     D+ +  +  G+TPL+ AA +     
Sbjct: 395 GFEIDTPDKFGRTCLHAAAAGGNVECIKLLQSSGADF-HKKDKCGRTPLHYAAANCHFHC 453

Query: 203 VLALLENSTSVSHEGPNGKTALH-AAAMKFDLVDTAL-------------RKLLEKKENL 248
           +  L+    +V+     G+TALH AAA   D   T L             R+L EK+  L
Sbjct: 454 IETLVTTGANVNETDDWGRTALHYAAASDMDRNKTILGNAHDNSEELERARELKEKEATL 513

Query: 249 IKE-----------TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADK 297
             E            D+ G+  IHYAA          YG+   + LLLE   S    +D 
Sbjct: 514 CLEFLLQNDANPSIRDKEGYNSIHYAAA---------YGHRQCLELLLERTNSGFEESDS 564

Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEG 351
               + LHLAA  G+ + ++ ++    +  ++ D +G   L  A          +LIN+G
Sbjct: 565 GATKSPLHLAAYNGHHQALEVLLQSLVD-LDIRDEKGRTALDLAAFKGHTECVEALINQG 623

Query: 352 DAM-------GNTPLH 360
            ++         TPLH
Sbjct: 624 ASIFVKDNVTKRTPLH 639

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 164/377 (43%), Gaps = 56/377 (14%)

Query: 18  LLDSTGEISQS-QMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRN--TILHINIISK 74
           L+DS  ++  S +M  K   A+A    +    +   K   LL    +N  T LHI   + 
Sbjct: 481 LIDSGAQVGASFEMGRKSIHASATAGNDDVARLLLAKNNGLLNVPDKNGYTPLHI---AS 537

Query: 75  ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
           ER+N   +FV+ +LEK   + ++  A   TPLH+AA+   + IV  L+E+  +  +  E 
Sbjct: 538 ERKN--NDFVKFLLEKGADVNVRTFANELTPLHLAARQDFTIIVKTLMEKRGIDVNAKE- 594

Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMA 194
             +G                T LH ++   N    + L  E P      +N G TPL++A
Sbjct: 595 -RAGF---------------TPLHLSIT-SNSRAARTLINETPAGINIKSNSGLTPLHLA 637

Query: 195 A--ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLL--EKKENLIK 250
               + S+  VL        ++    NG T LH A+M   L +    K    E+  ++  
Sbjct: 638 VLQNNLSAAKVLVKSNKKVKLNEMDNNGMTPLHYASM---LGNLEFVKYFTSEQGIDVNA 694

Query: 251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
           +T    WTP+H A     + + +       +++    DQ+          +T LHLAA  
Sbjct: 695 KTKVKNWTPLHLAILFKKFDVAQSLLQVRNIDISTRADQA----------ITPLHLAAAT 744

Query: 311 GNAEIVDAIISKNPECYELVDNRGWNFLHYAVVT------RSLINEGDAM------GNTP 358
           GN++IV  I++      +   N G+  LH A++       + LI +G  +      G+TP
Sbjct: 745 GNSQIVKTILNSGAVVDQETAN-GFTALHLAIMNPNTETPQFLIAKGANINAKTNDGSTP 803

Query: 359 LHVLAAVRRNEFYDVMI 375
           LH  AA+ +   + +++
Sbjct: 804 LHFAAALGKTNIFQLLM 820

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
255551947	582	ankyrin repeat-containing protein, putat	0.896	0.623	0.423	1e-76
224127079	394	predicted protein [Populus trichocarpa]	0.871	0.895	0.430	1e-76
255585399	575	ankyrin repeat-containing protein, putat	0.844	0.594	0.432	2e-76
224127098	399	predicted protein [Populus trichocarpa]	0.874	0.887	0.428	3e-76
224127104	405	predicted protein [Populus trichocarpa]	0.874	0.874	0.428	3e-76
224127106	575	predicted protein [Populus trichocarpa]	0.874	0.615	0.420	4e-76
224145572	395	predicted protein [Populus trichocarpa]	0.871	0.893	0.429	2e-74
224107373	391	predicted protein [Populus trichocarpa]	0.792	0.820	0.412	2e-64
225432914	596	PREDICTED: ankyrin repeat-containing pro	0.896	0.609	0.372	3e-59
147772498	708	hypothetical protein VITISV_032148 [Viti	0.903	0.516	0.375	3e-59

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/394 (42%), Positives = 250/394 (63%), Gaps = 31/394 (7%)

Query: 12  ETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINI 71
           +T E P LDS  E   + MD + +KAA + N+   K  A++ ++  +T K +NTILHI++
Sbjct: 34  DTTEIPDLDSKTE-DMAYMDAELYKAAVEENINSLKKYAKD-LDLQVTPK-KNTILHIHL 90

Query: 72  ISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHE 131
            S  + +V  +FV+E L+ CPSLL + N+ GD PLH+AA++GH  IV  L+E+AK    +
Sbjct: 91  NSPNKRSV--DFVKEALQLCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAK---AQ 145

Query: 132 NEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL 191
           NE+LE+G GA +QM +M N +K+ ALHEA  + ++ VV++LT+ DP + Y AN+  +TPL
Sbjct: 146 NEDLETGRGAMKQMWQMQNEKKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPL 205

Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKE 251
           Y+AA      +V+ +L    SV++ GP GKTALH A +  +     + ++L++++ L  E
Sbjct: 206 YLAAARGYLYVVIEILNTCKSVAYGGPKGKTALHGAVLSGN--RGIVLEILKREKRLTIE 263

Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
            ++ GWTP+HYAAY      ++ +G Y  V  LLE D+SA+ + DKDRK TALHLAA +G
Sbjct: 264 AEENGWTPLHYAAYGN----DQNFGAYVIVQRLLECDKSAAYVVDKDRKRTALHLAACRG 319

Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS---------------LINEGDAMGN 356
           N  I+  IISK P+C E+ D+RGWN LHYAVV+++               L+N+ DA GN
Sbjct: 320 NVRIMKEIISKCPDCCEIADDRGWNVLHYAVVSKNDEALQVILRNSSLIDLVNDRDAQGN 379

Query: 357 TPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNV 390
           TPLH+LA  R   +    + + + + +A  KQNV
Sbjct: 380 TPLHLLAVSR--PYLPSFVFDGEDDLNAFYKQNV 411

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/397 (43%), Positives = 248/397 (62%), Gaps = 44/397 (11%)

Query: 30  MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILE 89
           MDP  FKAA  GN+ PF++  +  +  LLTA   NTILH+ + ++  E  ST+FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENY-QTSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLE 58

Query: 90  KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESGVGAARQMIKM 148
           +CP LL Q N +G+TPLH+AA+ GHS +V  L++RAK LP     + ESGV  A+ M++M
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALPA----DPESGVTKAKMMLRM 114

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE-------SRSSD 201
           TN E++TALHEA  ++   VV+ILTKEDP++ Y AN  G+TPLY+AA             
Sbjct: 115 TNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGK 174

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
           +V  +L N  SV + GP+G+TALHAA+M  +  +TA RK+LEK++ L K TD+ GW+P+H
Sbjct: 175 VVDGILGNCISVDYGGPDGRTALHAASMAANY-ETA-RKMLEKEKKLTKTTDENGWSPLH 232

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
           YA+Y         + N   V +LLE D SA++IA+ ++K TALH+AA QG+ + +  I+S
Sbjct: 233 YASYCD-------WSNAPIVEVLLEYDASAASIAETEKKRTALHIAAIQGHVDAMKEIVS 285

Query: 322 KNPECYELVDNRGWNFLHYAVVTRS---------------LINEGDAMGNTPLHVLAAV- 365
           + P C +LVDNRGWN LHYAV ++                L  E D  GNTP H++AA+ 
Sbjct: 286 RCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALA 345

Query: 366 -RRNEFYDVMIRNT----QVNYDAVNKQNVSVEHILD 397
             + E+  V+  ++    +     +NK+ +SV  I +
Sbjct: 346 HEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYE 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/377 (43%), Positives = 237/377 (62%), Gaps = 35/377 (9%)

Query: 28  SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
           + M    +KAA DG ++PFK+ A      LL    ++TILH+N+ S      ST FV+E 
Sbjct: 25  TYMSLDLYKAAEDGKIDPFKNFAGPL--DLLVTPIKDTILHLNLASPSER--STSFVKEA 80

Query: 88  LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
           L+ CP +LLQ+NA GDT LH+AA++GH  IV  L+E  +  QH+  +LES   A RQM++
Sbjct: 81  LDMCPQILLQINADGDTLLHIAARYGHLDIVKLLIEHTR-AQHQ--DLESAGEAVRQMLR 137

Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
           MTN  K TALHEA  + + D+V++L ++DPD+ +S+N+ G+TPLY+A+E    ++V+ +L
Sbjct: 138 MTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIML 197

Query: 208 ENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267
           +  TS+++ GPNGKTALHAAAM        +  +L+KK +L+ + D+ GWTP+HYAAY G
Sbjct: 198 KACTSLAYGGPNGKTALHAAAMHRH--GGIVHAILDKKTSLVNKADEMGWTPLHYAAYIG 255

Query: 268 MYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECY 327
              +         V  LL  D+  +  ADK R+ TALHLAA Q N + +  II K P+C 
Sbjct: 256 ASRV---------VKQLLGYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCC 306

Query: 328 ELVDNRGWNFLHYAVVTRS---------------LINEGDAMGNTPLHVLAAVRRNEFYD 372
           +LVDNRGWN  HYAV+++S               L+NE DA GNTPLH+LAA++ +    
Sbjct: 307 KLVDNRGWNVAHYAVISKSDDALKILLANPSCIYLVNEKDAQGNTPLHLLAALQSHP--R 364

Query: 373 VMIRNTQVNYDAVNKQN 389
            ++ + + +  AV +QN
Sbjct: 365 SLMHHAKGHRFAVYRQN 381

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/399 (42%), Positives = 244/399 (61%), Gaps = 45/399 (11%)

Query: 28  SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
           S MDP  FKAAA+G+++PF+   +  ++ LLT    NTILH+ + ++ RE   T+FV  I
Sbjct: 5   SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVII 62

Query: 88  LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESGVGAARQMI 146
           LE CP LL Q N KG+ PLH+AA +GHS +V  L++RAK LP     + ESGV  A++M+
Sbjct: 63  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPT----DSESGVTEAKKML 118

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA------ESRSS 200
           +MTN E++TALHEA  H+   VV+ILTKEDP++ YSAN  G+TPLY+AA           
Sbjct: 119 RMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGG 178

Query: 201 DMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260
            +V  +L N  SV + GPNG+TAL+AA    D  D   RKLLEK++ L + TD+ GW+P+
Sbjct: 179 KVVDGILGNCISVDYGGPNGRTALNAAIWVRD--DETARKLLEKEKKLTQTTDENGWSPL 236

Query: 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
           H+AA +   W  R       V +LLE D SA+ IA+ +++ TALH+AA QG+   +  I+
Sbjct: 237 HHAACYD--WSPRI------VQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIV 288

Query: 321 SKNPECYELVDNRGWNFLHYAVVTRSLI---------------NEGDAMGNTPLHVLAAV 365
           S+ P C ELVDNRGWN LHYAV ++  +                + D  GNTP H++AA+
Sbjct: 289 SRCPACCELVDNRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAAL 348

Query: 366 -RRNEFYDVMIRNTQVNYD------AVNKQNVSVEHILD 397
             + + +  ++ N    Y        +NK+ +SV+ I +
Sbjct: 349 AHQQKQWQRVLFNDSYGYSGREIRCGLNKRQLSVDDIYE 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 171/399 (42%), Positives = 244/399 (61%), Gaps = 45/399 (11%)

Query: 28  SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
           S MDP  FKAAA+G+++PF+   +  ++ LLT    NTILH+ + ++ RE   T+FV  I
Sbjct: 11  SYMDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVII 68

Query: 88  LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESGVGAARQMI 146
           LE CP LL Q N KG+ PLH+AA +GHS +V  L++RAK LP     + ESGV  A++M+
Sbjct: 69  LEMCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPT----DSESGVTEAKKML 124

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA------ESRSS 200
           +MTN E++TALHEA  H+   VV+ILTKEDP++ YSAN  G+TPLY+AA           
Sbjct: 125 RMTNEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERG 184

Query: 201 DMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260
            +V  +L N  SV + GPNG+TAL+AA    D  D   RKLLEK++ L + TD+ GW+P+
Sbjct: 185 KVVDGILGNCISVDYGGPNGRTALNAAIWVRD--DETARKLLEKEKKLTQTTDENGWSPL 242

Query: 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
           H+AA +   W  R       V +LLE D SA+ IA+ +++ TALH+AA QG+   +  I+
Sbjct: 243 HHAACYD--WSPRI------VQVLLENDASAAYIAETEKRRTALHIAAIQGHVNAMKEIV 294

Query: 321 SKNPECYELVDNRGWNFLHYAVVTRSLI---------------NEGDAMGNTPLHVLAAV 365
           S+ P C ELVDNRGWN LHYAV ++  +                + D  GNTP H++AA+
Sbjct: 295 SRCPACCELVDNRGWNALHYAVASKDRVAFVHCLKIPELARLGTKKDDKGNTPFHLIAAL 354

Query: 366 -RRNEFYDVMIRNTQVNYD------AVNKQNVSVEHILD 397
             + + +  ++ N    Y        +NK+ +SV+ I +
Sbjct: 355 AHQQKQWQRVLFNDSYGYSGREIRCGLNKRQLSVDDIYE 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 244/397 (61%), Gaps = 43/397 (10%)

Query: 30  MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILE 89
           MDP  FKAA  GN+ PF++     +  LLT    NTILH+ + ++  E  ST+FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLE 59

Query: 90  KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESGVGAARQMIKM 148
           +CP LL Q N +G+TPLH+ A++GHS +V  L++RAK LP     + ESGV  A+ M++M
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPA----DPESGVTKAKMMLRM 115

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA-------ESRSSD 201
           TN E++TALHEA  ++   VV+ILTKEDP++ Y AN  G+TPLY+A              
Sbjct: 116 TNEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGK 175

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
           +V  +L N  SV + GP+G+TALHAA+M  +  +TA RK+LEK++ L K TD+ GW+P+H
Sbjct: 176 VVDGILGNCISVDYGGPDGRTALHAASMAANY-ETA-RKMLEKEKKLTKTTDENGWSPLH 233

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
           YA+Y         + N   V +LLE D S ++IA+ ++K TALH+AA QG+ + +  I+S
Sbjct: 234 YASYCD-------WSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVS 286

Query: 322 KNPECYELVDNRGWNFLHYAVVTRS---------------LINEGDAMGNTPLHVLAAV- 365
           + P C +LVDNRGWN LHYAV ++                L  E D  GNTP H++AA+ 
Sbjct: 287 RCPACCDLVDNRGWNALHYAVASKDTKVFKECLKIPELARLQTEKDDKGNTPFHLIAALA 346

Query: 366 -RRNEFYDVMIRNT----QVNYDAVNKQNVSVEHILD 397
             + E+  V+  ++    +     +NK+ +SV  I +
Sbjct: 347 HEQPEWRYVLFNDSNGYRKWQIYGLNKRKLSVNDIYE 383

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 170/396 (42%), Positives = 234/396 (59%), Gaps = 43/396 (10%)

Query: 30  MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILE 89
           M+PK +KAA  GN+ PFKD     +  LLT K +NTILH+ + ++ + + ST+FV +I++
Sbjct: 1   MEPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59

Query: 90  KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT 149
            CP LLLQ N KG+ PLH AA++G S +V  L++RAK       +LESGV  A++M++MT
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKA---RPTDLESGVTEAKKMLRMT 116

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA-----------ESR 198
           N EK+TALH A  +    VV+ILTKEDP++ YS N  G+TPLY+AA           E  
Sbjct: 117 NEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEEN 176

Query: 199 SSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT 258
              ++  +L N  SV + G +G+TALHAA M  D   T  RK+LE+  +L + TD  GW+
Sbjct: 177 RKKVINEILSNCKSVEYCGSHGRTALHAAGMYGDHETT--RKILERDASLTRRTDDDGWS 234

Query: 259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDA 318
           P+HYA +        F  +  TV +LLE D SA+ I D +++ TALHLAA +G      A
Sbjct: 235 PLHYAVF-----FRDFVHSVSTVEVLLEHDVSAAYIVDSEKR-TALHLAASRGTWAAAIA 288

Query: 319 IISKNPECYELVDNRGWNFLHYAVVTR--------------SLINEGDAMGNTPLHVLAA 364
           I++  P   ELVD+RGWN LHYA +TR               LI E D  GNTPLH+ AA
Sbjct: 289 IMNTCPASCELVDSRGWNALHYAAITRKGHIRFSRWIPKFDKLIYEKDNDGNTPLHLFAA 348

Query: 365 VRRNEFYDVMIRN----TQVNYDAVNKQNVSVEHIL 396
                F  + +R+           +NKQN+SV+ IL
Sbjct: 349 F--GNFPQMFLRSDWRHAYKKMCGLNKQNLSVDDIL 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107373|ref|XP_002333525.1| predicted protein [Populus trichocarpa] gi|222837132|gb|EEE75511.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/388 (41%), Positives = 222/388 (57%), Gaps = 67/388 (17%)

Query: 30  MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILE 89
           MDP  FK A  GN+ PF++  +  ++ LLT    NTILH                     
Sbjct: 1   MDPVLFKVAEAGNIGPFEN-CQTCLDQLLTPD-ENTILH--------------------- 37

Query: 90  KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESGVGAARQMIKM 148
                    N KG+ PLH+AA++GHS +V  L++ AK LP     + ESGV  A++M++M
Sbjct: 38  --------ANKKGEIPLHLAARYGHSNVVKVLIDCAKALPT----DPESGVTEAKKMLRM 85

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSS----DMVL 204
           TN E++TALHEA  +    VV+ILTKEDP++ YSAN  G+TPLY+AA SR       ++ 
Sbjct: 86  TNEEQDTALHEAARNSRGHVVEILTKEDPEFSYSANVLGETPLYIAAASRKCLERKKVID 145

Query: 205 ALLENSTSVSH-EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA 263
            +L N  SV +  GPNG+TALHAA    DL +TA RKLLEK++ L + TD+ GW+P+HYA
Sbjct: 146 EILTNCISVDYGAGPNGRTALHAAVRVRDL-ETA-RKLLEKEKKLTQTTDENGWSPLHYA 203

Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
           A +   W  R       V +LLE D SA+ IA+ +++ TALH+AA QG+ EI+  I+S+ 
Sbjct: 204 ACYD--WSPRI------VQVLLENDASAAYIAETEKRRTALHIAAIQGHVEIMKEIVSRC 255

Query: 324 PECYELVDNRGWNFLHYAVVTR----------------SLINEGDAMGNTPLHVLAAVRR 367
           P C ELVDNRGWN LHYAV  +                 L  + D  GNTP H++AA+ R
Sbjct: 256 PACCELVDNRGWNALHYAVARKDSSRVFKECLRIPLLARLKTKKDDKGNTPFHLIAALAR 315

Query: 368 NEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
            +     +   +     +NK+ +S + I
Sbjct: 316 EQRKWARVLFNERKICILNKRKLSAKDI 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432914|ref|XP_002280197.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 226/397 (56%), Gaps = 34/397 (8%)

Query: 17  PLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKER 76
           P   ++ +++ ++M    ++AA +G ++  +++    ++  LT   +NT+LHI+I   + 
Sbjct: 18  PTHPASNQVAATRMSRNVYEAAVEGKMDFLQNIVH--LDRELT-PNKNTVLHIHIRGGQA 74

Query: 77  ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
           +    E V  ++ +CPSLL + N K +TPLH+AA+ G   IV  LV++ K P   + +LE
Sbjct: 75  KK---EHVIAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALVDQVKAPHANDADLE 131

Query: 137 SG-VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA 195
           SG   + R+MI M N E++TALHEAV ++ ++VV  L   DP++ Y  N  G+TPLYMA 
Sbjct: 132 SGRTLSVREMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEYCRNRAGETPLYMAV 191

Query: 196 ESRSSDMVLALLENSTSVSH-EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ 254
           +    ++V  +L    S +H +GPNG TALH A +  D      RK+LEK  +L  ETD 
Sbjct: 192 KRGFDELVDRILRTCRSPAHYQGPNGLTALHQAIICSDAKGEVGRKILEKMPDLATETDD 251

Query: 255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAE 314
            GWTP+HYAAY         +G       LL+ D+SA+ IAD D K T LH+AA + +A+
Sbjct: 252 NGWTPLHYAAY---------FGKVSQAEALLKRDESAAYIADNDGK-TPLHIAASRNHAQ 301

Query: 315 IVDAIISKNPECYELVDNRGWNFLHYAVVTRS---------------LINEGDAMGNTPL 359
           I+  +IS  P+C E+VD +  N LH AV TR                LIN+ D  GNTPL
Sbjct: 302 IMKKLISYCPDCSEVVDEKRHNVLHLAVQTRGREAMELILKNSWGSNLINDKDVDGNTPL 361

Query: 360 HVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHIL 396
           H+ A    +    +M+ + +V+  AVN + ++   IL
Sbjct: 362 HMFAC-SLSSVPTLMLSHPRVDKMAVNNKGLTAADIL 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772498|emb|CAN60780.1| hypothetical protein VITISV_032148 [Vitis vinifera]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 150/400 (37%), Positives = 229/400 (57%), Gaps = 34/400 (8%)

Query: 14  GEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIIS 73
           GE  +L    +++ ++M    ++AA +G ++  +++    ++  LT   +NT+LHI+I  
Sbjct: 117 GEKVILWRYTQVAATRMSRNVYEAAVEGKMDFLQNIVH--LDRELTP-NKNTVLHIHIRG 173

Query: 74  KERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENE 133
            + +    E V  ++ +CPSLL + N K +TPLH+AA+ G   IV  LV++ K P   + 
Sbjct: 174 GQAKK---EHVIAMVRQCPSLLQKTNNKDETPLHMAAREGLIQIVGALVDQVKAPHANDA 230

Query: 134 ELESG-VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
           +LESG   + R+MI M N E++TALHEAV ++ ++VV  L   DP++ Y  N  G+TPLY
Sbjct: 231 DLESGRTLSVREMIGMRNKEEDTALHEAVRYRRLEVVNSLIDADPEFEYCRNRAGETPLY 290

Query: 193 MAAESRSSDMVLALLENSTSVSH-EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKE 251
           MA +    ++V  +L    S +H +GPNG TALH A +  D      RK+LEK  +L  +
Sbjct: 291 MAVKRGFDELVDRILRTCRSPAHYQGPNGLTALHQAIICSDAKGKVGRKILEKMPDLATK 350

Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
           TD  GWTP+HYAAY         +G       LL+ D+SA+ IAD D K T LH+AA + 
Sbjct: 351 TDDNGWTPLHYAAY---------FGKVSQAEALLKRDESAAYIADNDGK-TPLHIAASRN 400

Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS---------------LINEGDAMGN 356
           +A+I+  +IS  P+C E+VD +  N LH AV TR                LIN+ DA GN
Sbjct: 401 HAQIMKKLISYCPDCSEVVDEKRRNVLHLAVQTRGREAMELILKNSWGSNLINDKDADGN 460

Query: 357 TPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHIL 396
           TPLH+ A+   +    +M+ + +V+  AVN + ++   IL
Sbjct: 461 TPLHMFAS-SLSFVPTLMLSHPRVDKMAVNNKGLTAADIL 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.841	0.553	0.294	1.2e-25
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.891	0.533	0.264	5.5e-19
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.891	0.563	0.270	2.5e-18
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.851	0.497	0.261	2e-17
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.758	0.536	0.271	8.7e-17
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.590	0.440	0.298	1.7e-16
ZFIN|ZDB-GENE-060621-1	3980	ank3a "ankyrin 3a" [Danio reri	0.777	0.079	0.277	6.1e-14
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.639	0.379	0.283	6.7e-14
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.837	0.505	0.255	4e-13
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.565	0.437	0.306	5.6e-13

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 115/390 (29%), Positives = 179/390 (45%)

Query:    30 MDPKFFKAAADGN-VEPFKDMARE-KIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
             M+P    A   G+ V   K +  + K+   L     N+ILHI   +    +V    VE I
Sbjct:    37 MNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHI---AAALGHV--HIVEFI 91

Query:    88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
             +   P+LL  VN  G+T LHVAA+ G   IV  LV        E+   ++ + A     K
Sbjct:    92 ISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFIT----ESSSYDAFIAA-----K 142

Query:   148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
               N +  TALH A+  K+V+V   L     D  +  NND  +PLYMA E+   ++VL +L
Sbjct:   143 SKNGD--TALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKML 200

Query:   208 ENSTSVSHEGP--NGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAY 265
             E+S+S S      +GK+ +HAA MK +  D                 ++ G T + Y A 
Sbjct:   201 ESSSSPSILASMFSGKSVIHAA-MKANRRDILGIVLRQDPGLIELRNEE-GRTCLSYGAS 258

Query:   266 HGMYWINRFYGNYGTVNLLLETDQSASN---IADKDRKMTALHLAAGQGNAEIVDAIISK 322
              G Y   R+        +L E D++AS+   +AD D   T +H+AA +G+  I+   +  
Sbjct:   259 MGCYEGIRY--------ILAEFDKAASSLCYVADDDG-FTPIHMAAKEGHVRIIKEFLKH 309

Query:   323 NPECYELVDNRGWNFLHYAVVT---------------RSLINEGDAMGNTPLHVLAAVRR 367
              P+  EL++N+  N  H A +                + ++NE D  GNTPLH+    R 
Sbjct:   310 CPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKRMMNEQDINGNTPLHLATKHRY 369

Query:   368 NEFYDVMIRNTQVNYDAVNKQNVSVEHILD 397
                 +++  N  +N  A+N +  +   I +
Sbjct:   370 PIVVNMLTWNDGINLRALNNEGFTALDIAE 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 5.5e-19, P = 5.5e-19
 Identities = 110/416 (26%), Positives = 178/416 (42%)

Query:    12 ETGEAPLLD-ST--GEISQS-QMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTR-NTI 66
             ETG    LD ST   + S++  M PK   A   G+    +DM  +   +L +     NT+
Sbjct:    75 ETGRTHSLDLSTLFNDTSETVPMGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTM 134

Query:    67 LHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK 126
             LH+   +       T+ V  IL   P LL++ N+ G+  LHVAA  GH  +V  LV   K
Sbjct:   135 LHLAAAAGH-----TDLVCYILNAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIK 189

Query:   127 LPQHENEELESGV-GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN 185
                    ++     G A+++    +  ++ ALH ++  K++ V   L   +    + ANN
Sbjct:   190 -------DISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANN 242

Query:   186 DGKTPLYMAAESRSSDMVLALLENS------TSVSHEGPNGKTALHAAAMKFDLVDTAXX 239
             DG +PLY+A E+  +D+   + ++S      TS       G++ +H A MK    D    
Sbjct:   243 DGVSPLYLAVEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGA-MKARRKDILVA 301

Query:   240 XXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDR 299
                          +  G T + + A  G Y    F   Y     LL+    +  ++D D 
Sbjct:   302 ILSEDASLINFRDE--GRTCLSFGASLGYY--EGFC--Y-----LLDKALDSVYVSDDDG 350

Query:   300 KMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV----------VTR---- 345
                 +H+A   G  +I+ AI+ + P+  EL+D    N LH A           + R    
Sbjct:   351 SFP-IHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKD 409

Query:   346 ----SLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILD 397
                  LINE DA GNTPLH+       +   ++  + +V+   +N   V+   I +
Sbjct:   410 KNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAE 465

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 113/417 (27%), Positives = 182/417 (43%)

Query:    10 SIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTA---KTRNTI 66
             SI+     L D  GE     M+P+ F A   GNV+ F D  +    + L     +T +  
Sbjct:    18 SIQMLVTNLYDLPGEYVS--MNPEIFSAMRAGNVK-FLDKMKTNNNTPLACFRNETGDFT 74

Query:    67 LHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA- 125
             LH+   +  R     E V+ I+ +CP LLL+ N+K   PLH AA  G   +V   V R  
Sbjct:    75 LHL-AAAWGR----LELVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVARVN 129

Query:   126 KLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN 185
             ++    +EE    V     +  M + + NTALH A+   ++     L K +    + ANN
Sbjct:   130 EISDGLSEEERERVN----LYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANN 185

Query:   186 DGKTPLYMAAESRSSDMVLALLE---NSTSVSHEGPNGKTALHAA--AMKFDLVDTAXXX 240
              G +PL+ A  + S  +V A++     + +++ +    K+ +HAA  A   D++D     
Sbjct:   186 HGVSPLFTAIIAGSLTLVEAMMYVPGQTCNLASKLEGRKSLVHAALKAKNSDILDVILSE 245

Query:   241 XXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK 300
                         D+ G T +  AAY G Y         G VNLL    +S SN+ + D  
Sbjct:   246 DPSLVNER----DEEGRTCLSVAAYVGYY--------KGVVNLL---HRSTSNVFECDDD 290

Query:   301 MT-ALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLH------------------YA 341
              +  +H+A  +G  +I   ++   P+   L++ +G N LH                  Y 
Sbjct:   291 GSYPIHMAVEKGRVKIFLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYD 350

Query:   342 VVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV-NKQNVSVEHILD 397
             ++   LI E D  GNTPLH+     R    +++ + T  N+  + NK  +S   I +
Sbjct:   351 LIKNDLIMEQDVDGNTPLHLATLTWRPRTVNILNKFTLGNHLHIRNKDGLSALDIAE 407

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 105/402 (26%), Positives = 173/402 (43%)

Query:    29 QMDPKFFKAAADGNVEPFKDMAREKIE-SLLTAKTRNTILHINIISKERENVSTEFVEEI 87
             +M P+ F   +DGN E  + +    I  + + + T ++ILH+ +          E V+EI
Sbjct:    97 RMIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGH-----LELVKEI 151

Query:    88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLV-----ERAKLPQHENEELESGVGAA 142
             + +CP LLL+ N+ G TPLHVAA  GH+ IV   V       A+L   E+E +   V   
Sbjct:   152 VCECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESERMNPYV--- 208

Query:   143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
                  + + + NTAL+ A+  +  ++   L   + D  +  N  G + L++A  +    +
Sbjct:   209 -----LKDKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSL 263

Query:   203 VLALLE--NSTSVSHEGPN------GKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQ 254
             V A+L+   +  +  +  N      G+ +L   A+    +                  D 
Sbjct:   264 VKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALVTQSIAGVLDVILDEYPSLMDERDI 323

Query:   255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAE 314
              GWT +  AA+ G Y         G  NLL E       + D+D     +H AA +G+  
Sbjct:   324 NGWTCLSLAAHIGYY--------EGVCNLL-ERSTKGVYVCDQDGSFP-IHTAAEKGHEN 373

Query:   315 IVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI-NEG--------DAMGNTPL 359
             IV+  I + P    L++  G N LH A       ++  LI N+         D  GNTPL
Sbjct:   374 IVEEFIKRCPGSKHLLNKLGQNVLHIAAKNGKFWISNMLIINKDTEHLGVGQDVDGNTPL 433

Query:   360 HVLAAVRRNEFYDV--MIRNTQVNYDAVNKQNVSVEHILDYE 399
             H+  AV    F  +  + R++++     NK  +    I + E
Sbjct:   434 HL--AVMNWHFKSITWLARSSKI-LKVRNKNGLRARDIAERE 472

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 99/364 (27%), Positives = 155/364 (42%)

Query:    29 QMDPKFFKAAADGNVEPFKDMAREKIE-SLLTAKTRNTILHINIISKERENVSTEFVEEI 87
             QM+ + F   +DG+ E  + +       + L +   +++LH+      R     E V+ I
Sbjct:    80 QMNTEVFSGLSDGDKECLEMLKGVGTPMACLKSDRGDSVLHL----AARWG-HLELVKNI 134

Query:    88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA-----KLPQHENEELESGVGAA 142
             + +CP L+L++N K   PLHVAA  GHS IV  LV        +L + + E L   V   
Sbjct:   135 ISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAEEDRERLNPYV--- 191

Query:   143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
                  + +   NTALH A+  + +++   L  E+ +  +  NN+G + LYMA E+    +
Sbjct:   192 -----LRDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTL 246

Query:   203 VLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXX--------XXXXXTDQ 254
             V  +L+ + +   EG N          K  LV  A                       D+
Sbjct:   247 VKEILKTAGNNDLEGRNSNLDSKLEGRKH-LVHVALNARSIGVLDVILNEYPSLEDERDE 305

Query:   255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI--ADKDRKMTALHLAAGQGN 312
              G T + +AA  G Y         G  NLL   D+S  N+   D+D     +H AA  G+
Sbjct:   306 EGRTCLSFAASIGFY--------KGVCNLL---DRSTKNVYVCDEDGSFP-IHTAAENGH 353

Query:   313 AEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEGDAM---------GNT 357
               IV  I+ + P    +++  G N LH A       + +SL+   D           GNT
Sbjct:   354 IRIVKEILKRCPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDDTKHLGVGQDVDGNT 413

Query:   358 PLHV 361
             PLH+
Sbjct:   414 PLHL 417

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 81/271 (29%), Positives = 120/271 (44%)

Query:   137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVD-VVKILTK-EDPDYRY---SANNDGKTPL 191
             S +   + M ++T    +T LH AV H N D VV+ILTK  + +        N  G+T L
Sbjct:    11 SSIPKKKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETAL 70

Query:   192 YMAAESRSSDMVLALLE--NSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXX 249
             Y+AAE    ++V  ++   +   V  +  NG  A H AA + DL D              
Sbjct:    71 YVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDL-DVLKVLAEAHSELAM 129

Query:   250 XXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG 309
                D    T +H AA  G         +   VN LLE   S + IA  + K TALH A+ 
Sbjct:   130 T-VDLSNTTALHTAATQG---------HTEVVNFLLELGSSLAGIAKSNGK-TALHSASR 178

Query:   310 QGNAEIVDAIISKNPECYELVDNRGWNFLHYAV-------------VTRSLINEGDAMGN 356
              G+ +++ A+++  P     +D +G   LH AV               RS IN  D  GN
Sbjct:   179 NGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGN 238

Query:   357 TPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK 387
             T LH+ A   R++   +++ N   +  AVN+
Sbjct:   239 TALHIAARKGRSQIVKLLLANNMTDTKAVNR 269

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060621-1 ank3a "ankyrin 3a" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 98/353 (27%), Positives = 147/353 (41%)

Query:    60 AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVT 119
             AK  N    ++I  K +  V    V E+L K  + L  V   G TP+HVAA  GH  IV 
Sbjct:   358 AKALNGFTPLHIACK-KNRVK---VMELLLKHGASLQAVTESGLTPIHVAAFMGHENIVK 413

Query:   120 FLVERAKLPQHENEELESGVG-AAR----QMIKMTNNEKNTALHEAVCHKNVDVVKILTK 174
              L      P   N   E+ +  AAR     +++         LH A     +++V+ L +
Sbjct:   414 QLTHHGASPNTTNVRGETALHMAARAGQIDVVRYLLQNGAKVLHIASRLGKLEIVQQLLQ 473

Query:   175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV 234
             +      +A   G TPL+++A     ++   LLE  +S+S     G T LH AA K+  +
Sbjct:   474 KGA-LPNAATTSGYTPLHLSAREGHQEIAALLLEQGSSLSAATKKGFTPLHVAA-KYGQL 531

Query:   235 DTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI 294
             + A                  G TP+H AA+         Y N     LLL  DQ AS  
Sbjct:   532 EVANLLLQKKAAPDAAGKS--GLTPLHVAAH---------YDNQRVALLLL--DQGASPH 578

Query:   295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA-----------VV 343
             +      T LH+AA +   EI   ++    EC   V  +G + LH A           ++
Sbjct:   579 SPAKNGYTPLHIAAKKNQLEIGTTLLEYGAEC-NTVTRQGISPLHLAAQEGSVDLVSLLL 637

Query:   344 TRSL-INEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
             T+   +N G+  G TPLH+ A   +    +V++ N     DA  K   +  H+
Sbjct:   638 TKQANVNMGNKNGLTPLHLAAQDDKAGVTEVLL-NHGAEIDAQTKSGYTPLHV 689

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 6.7e-14, P = 6.7e-14
 Identities = 88/310 (28%), Positives = 138/310 (44%)

Query:    82 EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVER-----AKLPQHENEELE 136
             E V+ I+ +C  LL++ N+K   PLHVAA+ GH  +V  LV       A+L + + E L 
Sbjct:   133 ELVKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILN 192

Query:   137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
                     ++K  N +  TAL+ A+     +V   L   +    + A  DG +PLY+A E
Sbjct:   193 P------YLLKDINGD--TALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVE 244

Query:   197 SRSSDMVLALLENS----TSVSHEGPNGKTALHAA--AMKFDLVDTAXXXXXXXXXXXXX 250
             ++ + +V A+L N      +++ EG   K   HAA  ++  D++D               
Sbjct:   245 AKDASLVKAMLGNDGPQRKNLNLEGR--KYLAHAALNSLSTDILDVILNEYPSLVDER-- 300

Query:   251 XTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
               D+ G T + + A  G +         G  NLL  + +    + D D     +HLA  +
Sbjct:   301 --DEEGRTCLSFGASIGYH--------KGVCNLLNRSRKGVF-VCDDDGSYP-IHLAVEK 348

Query:   311 GNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI---------NEGDAMG 355
             G  ++V  I  + P    L++ +G N LH A       + R L          NE D  G
Sbjct:   349 GRIKVVKEICKRCPYSKLLLNKKGQNLLHIAAESGKFRILRHLTAHEQINHLANEKDVDG 408

Query:   356 NTPLHVLAAV 365
             NTPLH LA +
Sbjct:   409 NTPLH-LATI 417

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 100/392 (25%), Positives = 167/392 (42%)

Query:    29 QMDPKFFKAAADGNVEPFKDMAREKIE-SLLTAKTRNTILHINIISKERENVSTEFVEEI 87
             +M P+ F   ++G  E  + +         + + T ++ILHI   +K       E V+EI
Sbjct:    66 EMTPEIFGGMSNGEKECLEKLRSNGTPMERVKSNTGDSILHI--AAKWGH---LELVKEI 120

Query:    88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVER--AKLPQHENEELESGVGAARQM 145
             + +CP LL + N+   TPLHVA   GH+ +V  LV    + L     EE E   G    +
Sbjct:   121 IFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESE---GLNPHV 177

Query:   146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES--RSSDMV 203
             +K  + + NTAL+ A+  + +++   L   D D  +  NN G + LY A ++  +  D+V
Sbjct:   178 LK--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDLV 235

Query:   204 LALLENST-SVSHEGPN--------GKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQ 254
              A+L+ +  +V  E           G   L   A+K   +                  D+
Sbjct:   236 KAILKTTDDNVDREVRKFNLDSKLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQ-DE 294

Query:   255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAE 314
              G T + Y A  G Y         G  N+L  + +    + D+D     +H AA   + E
Sbjct:   295 DGRTCLSYGASIGYY--------KGLCNILNRSTKGVY-VCDQDGSFP-IHSAAKNEHYE 344

Query:   315 IVDAIISKNPECYELVDNRGWNFLHYAVVTRS------LINEGDAM---------GNTPL 359
             I+   I + P    L++  G N LH A    +      L+++ D           GNTPL
Sbjct:   345 IIKEFIKRCPASKYLLNRLGQNILHVAAKNEASLTAYMLMHDKDTKHLGVGQDVDGNTPL 404

Query:   360 HVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVS 391
             H+  AV   +F  +    ++ N++ +  +N S
Sbjct:   405 HL--AVMNWDFDSITCLASR-NHEILKLRNKS 433

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 80/261 (30%), Positives = 112/261 (42%)

Query:   147 KMTNNEKNTALHEAVCHKNVDVV-KILTKED----PDYRYSANNDGKTPLYMAAESRSSD 201
             +MT    +T LH AV     D++ +++ + D     +     N  G+T LY+AAE   +D
Sbjct:    11 QMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAAEYGYTD 70

Query:   202 MVLALLENSTSV--SHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTP 259
             MV  L+++S SV    +  NG  A H AA   +L                   D    T 
Sbjct:    71 MVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNL--QVLDVLIEANPELSFTFDSSKTTA 128

Query:   260 IHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
             +H AA  G       +G    V  LL+     + IA  + K TALH AA  G+  IV  +
Sbjct:   129 LHTAASQG-------HGEI--VCFLLDKGVDLAAIARSNGK-TALHSAARNGHTVIVKKL 178

Query:   320 ISKNPECYELVDNRGWNFLHYAVVTR-------------SLINEGDAMGNTPLHVLAAVR 366
             I K       VD +G   LH AV  +             SLIN  D  GNTPLH+     
Sbjct:   179 IEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKN 238

Query:   367 RNEFYDVMIRNTQVNYDAVNK 387
             R E    +++  +V+  AVNK
Sbjct:   239 RAEIVQTVLKYCEVSRVAVNK 259

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01200012	annotation not avaliable (394 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0017001601	hypothetical protein (522 aa)			•						0.459
	eugene3.00051263	annotation not avaliable (398 aa)			•						0.445
	fgenesh4_pg.C_LG_I003169	hypothetical protein (278 aa)			•						0.439
	grail3.0022009901	hypothetical protein (328 aa)			•						0.413
	gw1.I.2074.1	annotation not avaliable (128 aa)			•						0.410
	eugene3.00051320	SubName- Full=Auxin-regulated protein-like protein; (261 aa)			•						0.407
	grail3.0022009801	hypothetical protein (109 aa)			•						0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.003
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.1 bits (216), Expect = 8e-21
 Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 14/137 (10%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
           + DG+TPL++AA +   ++V  LLEN   V+ +  +G+T LH AA    L    ++ LLE
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHL--EIVKLLLE 61

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA 303
           K  + +   D+ G TP+H AA           GN   V LLL+      N  DKD + T 
Sbjct: 62  KGAD-VNARDKDGNTPLHLAAR---------NGNLDVVKLLLKHGADV-NARDKDGR-TP 109

Query: 304 LHLAAGQGNAEIVDAII 320
           LHLAA  G+ E+V  ++
Sbjct: 110 LHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.1 bits (211), Expect = 4e-20
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 19/134 (14%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
             +  G TPLH+AA  GH  +V  L+E                GA    +   +N+  T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLEN---------------GA---DVNAKDNDGRTP 43

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           LH A  + ++++VK+L ++  D   + + DG TPL++AA + + D+V  LL++   V+  
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 217 GPNGKTALHAAAMK 230
             +G+T LH AA  
Sbjct: 103 DKDGRTPLHLAAKN 116

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.3 bits (196), Expect = 5e-18
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 25/147 (17%)

Query: 61  KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTF 120
           +   T LH+   +        E V+ +LE    +  + +  G TPLH+AAK GH  IV  
Sbjct: 5   EDGRTPLHLAASNG-----HLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKL 58

Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
           L+E+               GA    +   + + NT LH A  + N+DVVK+L K   D  
Sbjct: 59  LLEK---------------GAD---VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-V 99

Query: 181 YSANNDGKTPLYMAAESRSSDMVLALL 207
            + + DG+TPL++AA++   ++V  LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.3 bits (183), Expect = 3e-16
 Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 24/137 (17%)

Query: 251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
             D+ G TP+H AA +G         +   V LLLE   +  N  D D   T LHLAA  
Sbjct: 2   ARDEDGRTPLHLAASNG---------HLEVVKLLLENG-ADVNAKDNDG-RTPLHLAAKN 50

Query: 311 GNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL------------INEGDAMGNTP 358
           G+ EIV  ++ K        D  G   LH A    +L            +N  D  G TP
Sbjct: 51  GHLEIVKLLLEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTP 109

Query: 359 LHVLAAVRRNEFYDVMI 375
           LH+ A     E   +++
Sbjct: 110 LHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 21/104 (20%)

Query: 106 LHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN 165
           LH+AAK G+  +V  L+E+               GA      +   + +TALH A  + N
Sbjct: 1   LHLAAKNGNLELVKLLLEK---------------GA-----DVNLGDTDTALHLAARNGN 40

Query: 166 VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
           +++VK+L +   D   + + DG T L++AA + + ++V  LLE+
Sbjct: 41  LEIVKLLLEHGADVN-AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           LH A  + N+++VK+L ++  D      +   T L++AA + + ++V  LLE+   V+ +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 217 GPNGKTALHAAAMK--FDLVDTALRKLLEKKENL 248
             +G TALH AA     ++V    + LLE   ++
Sbjct: 58  DKDGNTALHLAARNGNLEIV----KLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 21/99 (21%)

Query: 80  STEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139
           + E V+ +LEK   + L      DT LH+AA+ G+  IV  L+E                
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEH--------------- 50

Query: 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178
           GA    +   + + NTALH A  + N+++VK+L +   D
Sbjct: 51  GAD---VNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 18/98 (18%)

Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENL 248
           L++AA++ + ++V  LLE    V+    +  TALH AA     ++V     KLL +    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIV-----KLLLEHGAD 53

Query: 249 IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE 286
           +   D+ G T +H AA +         GN   V LLLE
Sbjct: 54  VNAKDKDGNTALHLAARN---------GNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 260 IHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
           +H AA           GN   V LLLE         +     TALHLAA  GN EIV  +
Sbjct: 1   LHLAAK---------NGNLELVKLLLEKGADV----NLGDTDTALHLAARNGNLEIVKLL 47

Query: 320 ISKNPECYELVDNRGWNFLHYAVVTRSL 347
           +    +     D  G   LH A    +L
Sbjct: 48  LEHGADV-NAKDKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 18/103 (17%)

Query: 224 LHAAAMKFDLVDTALRKLLEKKENL-IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVN 282
           LH AA   +L    ++ LLEK  ++ + +TD    T +H AA           GN   V 
Sbjct: 1   LHLAAKNGNL--ELVKLLLEKGADVNLGDTD----TALHLAAR---------NGNLEIVK 45

Query: 283 LLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPE 325
           LLLE    A   A      TALHLAA  GN EIV  ++    +
Sbjct: 46  LLLE--HGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 57/261 (21%), Positives = 97/261 (37%), Gaps = 47/261 (18%)

Query: 98  VNAK---GDTPLHV--AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNE 152
           VNAK   G TPLHV  +    +  ++  L+ +            + V A        +  
Sbjct: 110 VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG-----------ADVNA-------LDLY 151

Query: 153 KNTALHEAVCHKNVDV--VKILTKEDPDYRYSANNDGKTPLYMAAESR--SSDMVLALLE 208
             T L   +  +N +V  +++L     D  Y+ ++  ++ L+   +S    + +V  L+ 
Sbjct: 152 GMTPLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIR 210

Query: 209 NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL-IKETDQYGWTPIHYAAYHG 267
                +     G T LH+ A       + +  LL     + I   ++YG TP+HYAA   
Sbjct: 211 AGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA--GISINARNRYGQTPLHYAAV-- 266

Query: 268 MYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECY 327
                  + N      L+      + ++      T L L     N   V A ++KNP   
Sbjct: 267 -------FNNPRACRRLIALGADINAVSSDGN--TPLSLMVRNNNGRAVRAALAKNPS-A 316

Query: 328 ELVDNRGWNFLHYAVVTRSLI 348
           E V       L+ A V    I
Sbjct: 317 ETVAAT----LNTASVAGGDI 333

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 50/212 (23%), Positives = 81/212 (38%), Gaps = 16/212 (7%)

Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
           +   ++ + N  L  A+         +L      +  + + DG+ PL+ AA      +V 
Sbjct: 31  LSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVK 90

Query: 205 ALLENSTSVSHEGPNGKTALHAAAMKFDLVDT---ALRKLLEKKENL--IKETDQYGWTP 259
            LL +   V+ +  +G T LH AA+  +  +      + LLE   +L      D+ G TP
Sbjct: 91  LLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150

Query: 260 IHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
           +H+AA +G         +   V LLLE    A   +     +TAL  AA  G  E+V  +
Sbjct: 151 LHWAALNG---------DADIVELLLE--AGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Query: 320 ISKNPECYELVDNRGWNFLHYAVVTRSLINEG 351
           + K      L  N              L    
Sbjct: 200 LDKGLHLSLLKFNLEGVANANVSKRNILNLTS 231

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 31/225 (13%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G +P+ +A KF  S  +  L++   +P  +  ++ES                   LH+AV
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES------------------ELHDAV 76

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
              +V  V+ L             DG TPL++A   +  D++  L+           +  
Sbjct: 77  EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF 136

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTV 281
           + LH A M  D+      +LL   +  +   D  G TP+  A            G+    
Sbjct: 137 SPLHLAVMMGDIKGI---ELLIDHKACLDIEDCCGCTPLIIAMA---------KGDIAIC 184

Query: 282 NLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPEC 326
            +LL++  +  +   K+  + AL  A      +IV   I +  +C
Sbjct: 185 KMLLDSGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 55/240 (22%)

Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT-ALRKLLEKKENLIK 250
            + A + + + V  LL     V+  G  GKT LH             +R LLE   ++  
Sbjct: 19  LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 251 ETDQYGWTPIHYAAYHGMYW------------INR--FYG-------------NYGTVNL 283
             ++ G+TP+H   Y+                +N     G             N   + L
Sbjct: 79  -PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRL 137

Query: 284 LLE--TDQSASNIADKDRKMTALH--LAAGQGNAEIVDAIISKNPECYELVDNRGWNFLH 339
           LL    D +A ++      MT L   L +   N E++  +I    + Y  VD+R  + LH
Sbjct: 138 LLRKGADVNALDLYG----MTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLH 192

Query: 340 --------YAVVTRSLINEG------DAMGNTPLHVLAA---VRRNEFYDVMIRNTQVNY 382
                    A + R LI  G      D +GNTPLH +A     +R+    ++I    +N 
Sbjct: 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 58/275 (21%), Positives = 98/275 (35%), Gaps = 89/275 (32%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERA------KLPQHENEE----LESGVGAARQMI 146
            +N K   PL  A K G   I+  L++         +P  E +     L+ G+      +
Sbjct: 63  HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGID-----V 117

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206
            + + E  T LH A+   +++ +K+L +   D     +N G  P+++A +    D++  L
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLL 176

Query: 207 LENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYH 266
           LE     +                                      D  G +P+H AA  
Sbjct: 177 LEKGAYAN------------------------------------VKDNNGESPLHNAAE- 199

Query: 267 GMYWINRFYGNYGTVNLLLETDQSASNIADK-DRKMTALHLAAGQGNAEIVDAIISKNPE 325
                   YG+Y  + LL++     ++I +K     T LH           +AII     
Sbjct: 200 --------YGDYACIKLLID---HGNHIMNKCKNGFTPLH-----------NAIIHNRSA 237

Query: 326 CYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLH 360
              L++N               IN+ D  G+TPLH
Sbjct: 238 IELLINNAS-------------INDQDIDGSTPLH 259

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 52/224 (23%), Positives = 79/224 (35%), Gaps = 28/224 (12%)

Query: 31  DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEK 90
                 A    N      +    +  L    +  +   +N+  +     +    E +L+ 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 91  C-PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT 149
                L   +  G  PLH AA  G   IV  L             L SG       +   
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLL-------------LASGAD-----VNAK 102

Query: 150 NNEKNTALHEAV-----CHKNVDVVKILTKEDPDYR--YSANNDGKTPLYMAAESRSSDM 202
           + + +T LH A         N++V K+L +   D       + DG TPL+ AA +  +D+
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162

Query: 203 VLALLENSTSVSHEGPNGKTALHAAAM--KFDLVDTALRKLLEK 244
           V  LLE     +     G TAL  AA   + +LV   L K L  
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 33/180 (18%)

Query: 164 KNVDVVKILTKEDPDYRYSANNDGKTPLYMAA--ESRSSDMVLALLENSTSVSHEGPNGK 221
              ++VK+L +   +   + +N+G TPL  A   +S S  +V  LL+N  +V+ +  +G+
Sbjct: 84  DVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE 142

Query: 222 TALHAAAMKFDLVDTA-LRKLLEKKENL---------------IKETDQYGWTPIHYAAY 265
             LH    + + +D   L+ L++K  ++               I   D YG+TP+HYA Y
Sbjct: 143 NLLHLYL-ESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVY 201

Query: 266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIVDAIISKNP 324
                      N   V  LL+     +N    ++   T LH+A    N EI   +++  P
Sbjct: 202 ---------NNNPEFVKYLLD---LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 47/268 (17%)

Query: 8   SVSIETGEAPLLDS--TGEISQSQMDPKFFKAAADGN----------VEPFKDMAREKIE 55
           ++S++    PL+D+  +G+    ++   F K  AD N          +   K  A + I+
Sbjct: 29  NISVDETTTPLIDAIRSGDAKIVEL---FIKHGADINHINTKIPHPLLTAIKIGAHDIIK 85

Query: 56  SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHS 115
            L+      +IL I  I K+        ++ IL+ C   +   +A+  T LH A K G  
Sbjct: 86  LLIDNGVDTSILPIPCIEKD-------MIKTILD-CGIDVNIKDAELKTFLHYAIKKGDL 137

Query: 116 GIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE 175
             +  L E                      + + ++     +H A+ H   D++K+L  E
Sbjct: 138 ESIKMLFEY------------------GADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-E 178

Query: 176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVD 235
              Y    +N+G++PL+ AAE      +  L+++   + ++  NG T LH A     + +
Sbjct: 179 KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI----IHN 234

Query: 236 TALRKLLEKKENLIKETDQYGWTPIHYA 263
            +  +LL    + I + D  G TP+H+A
Sbjct: 235 RSAIELLINNAS-INDQDIDGSTPLHHA 261

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 47/242 (19%)

Query: 154 NTALHEAV---CHKNVDVVKILTKEDPDYRYSANND-----GKTPLYMAAESRSS-DMVL 204
            T LH  +     K  D+V++L +        A+ +     G TPL++   + ++ D++ 
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLE------AGADVNAPERCGFTPLHLYLYNATTLDVIK 101

Query: 205 ALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH-YA 263
            L++    V+ +   G+T LH     F++    +R LL K  + +   D YG TP+    
Sbjct: 102 LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLL 160

Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH--LAAGQGNAEIVDAIIS 321
                        N   + LL+  D  A   A  DR  + LH  L + +  A IV  +I 
Sbjct: 161 KSRNA--------NVELLRLLI--DAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIR 210

Query: 322 KNPECYELVDNRGWNF-LHYAVVTRSL--------------INEGDAMGNTPLHVLAAVR 366
               C     +   N  LH      S               IN  +  G TPLH  AAV 
Sbjct: 211 AG--CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLH-YAAVF 267

Query: 367 RN 368
            N
Sbjct: 268 NN 269

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 57/361 (15%)

Query: 70  NIISKERENVSTEFVEEILEKC-------PSLLLQ----VNAK---GDTPLHVAAKFGHS 115
           N I  ++ N S E+++ I E+          +LL+    VNAK     TP+H AA+ G++
Sbjct: 132 NDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNA 191

Query: 116 GIVTFLVERAK---------LPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNV 166
            +V  L+             L   E       +   + +I   +N     L      +N 
Sbjct: 192 KMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNE 251

Query: 167 DVVKILTKEDPDYRYSANNDGK-TPLYMAAESRS-SDMVLALLENSTSVSHEGPNGKTAL 224
           D+   L   D  +  ++ +D K TPL+ A+++ S S +V  LLE    V+ +   G+T L
Sbjct: 252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Query: 225 HAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLL 284
           +   M  +  DT   + L      +   D+   TP+H A+      ++R   N   V  L
Sbjct: 312 Y--LMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAST-----LDR---NKDIVITL 361

Query: 285 LETDQSASNIADKDR-KMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVV 343
           LE     +N+  +D    T +H AA + N  I++ ++    +   L    G   LH+A+ 
Sbjct: 362 LEL---GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFALC 417

Query: 344 -------TRSLINEGDAMG------NTPLHVLAAVRRNEFYDV--MIRNTQVNYDAVNKQ 388
                   ++LI+ G  +       +TPLH   A ++N   DV  M+ +   + +A+N Q
Sbjct: 418 GTNPYMSVKTLIDRGANVNSKNKDLSTPLHY--ACKKNCKLDVIEMLLDNGADVNAINIQ 475

Query: 389 N 389
           N
Sbjct: 476 N 476

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
           TALH AA+   L    ++ LLEK  + I  TD+ G T +H AA +G   +
Sbjct: 3   TALHKAAISGRL--ELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEV 49

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 43/220 (19%)

Query: 190 PLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLI 249
           PL+ A E+R+ D+V +LL    +V+       T LH    + + +   +++++       
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKL--GMKEMIRSI---N 94

Query: 250 KETDQYGWTPIHYAAYH------GMYWINRFYGNYGT------------------VNLLL 285
           K +  Y    I  A  +       +   NR+                          LLL
Sbjct: 95  KCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLL 154

Query: 286 ETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK-----------NPECYELVDNRG 334
               +  N+ D+ +  TALH A    +  + + ++S            N   +  V +  
Sbjct: 155 SYG-ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYN 213

Query: 335 WNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVM 374
              +H  +   +  +  D  GNTPLH+  +V   + YD++
Sbjct: 214 KPIVHILLENGASTDARDKCGNTPLHI--SVGYCKDYDIL 251

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 284 LLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA 341
           LLE      N  D +   T LHLAA  G  E+V  ++ K      L D+ G   L  A
Sbjct: 1   LLEHGPIDLNATDGNG-NTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 35/211 (16%)

Query: 161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG 220
              K  ++  I+ ++D +           PLY+A E+R+ D+V  LL+N   ++    N 
Sbjct: 11  RIIKVKNIKYIIMEDDLNDYSYKKP--VLPLYLAKEARNIDVVKILLDNGADINSSTKNN 68

Query: 221 KTALH----AAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
            T LH          D+ +    KLL +    +   D  G TP+ YA             
Sbjct: 69  STPLHYLSNIKYNLTDVKEIV--KLLLEYGANVNAPDNNGITPLLYAISKKS-------N 119

Query: 277 NYGTVNLLLETDQSASNIADKD-RKMTALHLAAGQG--NAEIVDAIISKNPECYELVD-- 331
           +Y  V  LL    + +N+  K+      LHL       + +I+  +I K       VD  
Sbjct: 120 SYSIVEYLL---DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG------VDIN 170

Query: 332 --NRGWNFLHYAVVTRSLINEGDAMGNTPLH 360
             NR    L Y V     IN  D  G TPLH
Sbjct: 171 AKNRVNYLLSYGVP----INIKDVYGFTPLH 197

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 49/173 (28%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
           ++KG TPLH+AA  G+   V  L++ A      N  +    G             NTAL 
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVLLKHAC-----NVHIRDANG-------------NTALW 596

Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTP---LYMAAESRSSDMVLALLENSTSVSH 215
            A+  K+  + +IL      Y +++ +D       L  AA+      +  LL+   +V  
Sbjct: 597 NAISAKHHKIFRIL------YHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 216 EGPNGKTAL-------HAAAMKF---------------DLVDTALRKLLEKKE 246
           E   G TAL       H   ++                D   T LR+LL+K+E
Sbjct: 651 EDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKRE 703

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 37  AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
           AA +G++E  K +  +  +     K  NT LH+   +      + + V+ +L+    +  
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG-----NLDVVKLLLKHGADVNA 101

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLV 122
           + +  G TPLH+AAK GH  +V  L+
Sbjct: 102 R-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAE 314
           G T +H AA  G             V  LLE      +I   D    TALH+AA  GN E
Sbjct: 1   GRTALHKAAISG---------RLELVKYLLEKG---VDINRTDEDGNTALHIAAENGNLE 48

Query: 315 IVDAII 320
           ++  ++
Sbjct: 49  VLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGH--SGIVTFL 121
            T L   I  K     S   VE +L+   ++ +  N+ G+  LH+  +       I+  L
Sbjct: 107 ITPLLYAISKKSN---SYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKILKLL 162

Query: 122 VER-AKLPQHENEE--LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--D 176
           +++   +         L  GV      I + +    T LH AV + N + VK L     +
Sbjct: 163 IDKGVDINAKNRVNYLLSYGV-----PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN 217

Query: 177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           P+     N  G TPL++A  + + ++   LL N  S+  
Sbjct: 218 PNLV---NKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206
               ++ NTALH A  +K+  + ++L     +     +    +PL+ A +  +  +V  L
Sbjct: 162 MKDRHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHIL 220

Query: 207 LENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA 263
           LEN  S       G T LH +       D  L+ LLE   ++  ++   G T +H +
Sbjct: 221 LENGASTDARDKCGNTPLHISVGYCKDYDI-LKLLLEHGVDVNAKSYILGLTALHSS 276

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 154 NTALHEAVCHKNVDVVKIL--TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
            TALH+A     +++VK L     D +     + DG T L++AAE+ + +++  LL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRT---DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 156 ALHEAVCHKNVDVVKILTKEDPDYRYSAN---NDGKTPLYMAAESRSSDMVLALLENSTS 212
           AL +A+    +D+ + L     D   + N    DG +P+ +A + R S+ +  L+++   
Sbjct: 5   ALCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI 60

Query: 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
              + P+ ++ LH A  + D+        L K  + +   D  G TP+H A       I 
Sbjct: 61  PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLDIM 118

Query: 273 RFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
           +     G      + D   ++      K + LHLA   G+ + ++ +I  +  C ++ D 
Sbjct: 119 KLLIARGA-----DPDIPNTD------KFSPLHLAVMMGDIKGIELLI-DHKACLDIEDC 166

Query: 333 RGWNFLHYAV------VTRSLINEG 351
            G   L  A+      + + L++ G
Sbjct: 167 CGCTPLIIAMAKGDIAICKMLLDSG 191

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 101 KGDTPLHVAAKFGHSGIVTFLVER 124
            G+TPLH+AA+ GH  +V  L+E 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 24/103 (23%)

Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGD 352
           N  D+D   T LHLAA  G+ E+V  ++    +                      +N  D
Sbjct: 1   NARDED-GRTPLHLAASNGHLEVVKLLLENGAD----------------------VNAKD 37

Query: 353 AMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
             G TPLH+ A     E   +++     + +A +K   +  H+
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHL 79

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 18/71 (25%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G T LH AA  G   +V +L+E+                        T+ + NTALH A 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR------------------TDEDGNTALHIAA 42

Query: 162 CHKNVDVVKIL 172
            + N++V+K+L
Sbjct: 43  ENGNLEVLKLL 53

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
           ++ K+L     D      + G T L+ A E++   +   LL    +V+       + LH 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHH 207

Query: 227 AAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE 286
           A   ++     +  LLE   +     D+ G TP+H +  +          +Y  + LLLE
Sbjct: 208 AVKHYN--KPIVHILLENGAS-TDARDKCGNTPLHISVGYCK--------DYDILKLLLE 256

Query: 287 TDQSASNIADKDRKMTALHLA 307
                 N       +TALH +
Sbjct: 257 HGVDV-NAKSYILGLTALHSS 276

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV 342
            TALH AA  G  E+V  ++ K  +     D  G   LH A 
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAA 42

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 18/74 (24%)

Query: 87  ILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
           +LE  P  L   +  G+TPLH+AAK+G   +V +L++                      +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP------------------GVDL 42

Query: 147 KMTNNEKNTALHEA 160
            + +++  TAL  A
Sbjct: 43  NLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02792	631	ankyrin-like protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.95
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.39
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.29
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.27
PF13606	30	Ank_3: Ankyrin repeat	98.9
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.84
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.79
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.76
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.68
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.66
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.64
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.64
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.56
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.45
KOG0522	560	consensus Ankyrin repeat protein [General function	98.41
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.37
KOG0522	560	consensus Ankyrin repeat protein [General function	98.27
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.22
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.21
KOG2384	223	consensus Major histocompatibility complex protein	98.05
KOG0511	516	consensus Ankyrin repeat protein [General function	98.0
KOG0511	516	consensus Ankyrin repeat protein [General function	97.97
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.92
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.87
KOG2384	223	consensus Major histocompatibility complex protein	97.85
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.61
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.5
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.9
KOG2505	591	consensus Ankyrin repeat protein [General function	96.83
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.82
KOG2505	591	consensus Ankyrin repeat protein [General function	96.49
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.79
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.66
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.75
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.19
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.07
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.96
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	83.01

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.9e-49  Score=383.94  Aligned_cols=329  Identities=22%  Similarity=0.240  Sum_probs=276.5

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhh----------------------------------
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKE----------------------------------   75 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~----------------------------------   75 (405)
                      .+|||.|+..|+.|+|+.|++++++.. ..+..|.||||+|  +..                                  
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  119 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTI--CIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDE  119 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccc--cCCCCccccccccccchhhcccccHHHHHHHHHHHHH
Confidence            579999999999999999999988744 7777899999987  522                                  


Q ss_pred             ------------------------------------hhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHH
Q 040751           76 ------------------------------------RENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVT  119 (405)
Q Consensus        76 ------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  119 (405)
                                                          ++.+++++|+    ..+.+++..|..|.||||+|+..|+.++|+
T Consensus       120 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll----~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~  195 (682)
T PHA02876        120 ACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLL----EGGADVNAKDIYCITPIHYAAERGNAKMVN  195 (682)
T ss_pred             HHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence                                                2233333333    467888999999999999999999999999


Q ss_pred             HHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHH-----------------------------
Q 040751          120 FLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK-----------------------------  170 (405)
Q Consensus       120 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~-----------------------------  170 (405)
                      +|+++|++++                  ..+..|.||||.|+..++.++++                             
T Consensus       196 ~LL~~Gad~n------------------~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~  257 (682)
T PHA02876        196 LLLSYGADVN------------------IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSL  257 (682)
T ss_pred             HHHHCCCCcC------------------ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHH
Confidence            9999999865                  44555666666666665555554                             


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcccCCCCCcHHHHHHhcCC-ccHHHHHHHHHhhhhh
Q 040751          171 ILTKEDPDYRYSANNDGKTPLYMAAESRSS-DMVLALLENSTSVSHEGPNGKTALHAAAMKFD-LVDTALRKLLEKKENL  248 (405)
Q Consensus       171 ~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~-~~~~~v~~Ll~~~~~~  248 (405)
                      +|++.|++++ ..+..|.||||+|+..++. +++++|++.|++++.++..|.||||+|+..|. .  +.++.|+..+.+ 
T Consensus       258 ~Ll~~g~~vn-~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~--~~v~~Ll~~gad-  333 (682)
T PHA02876        258 LLYDAGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDT--ENIRTLIMLGAD-  333 (682)
T ss_pred             HHHHCCCCCC-CCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCH--HHHHHHHHcCCC-
Confidence            5555566666 5677899999999999986 69999999999999999999999999999984 6  788888887766 


Q ss_pred             hhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccc
Q 040751          249 IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYE  328 (405)
Q Consensus       249 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  328 (405)
                      ++..+..|.||||+|+..+        ...++++.|++.+.++ +..+ ..|.||||+|+..++.+++++|+++|+++ +
T Consensus       334 in~~d~~g~TpLh~A~~~~--------~~~~iv~lLl~~gadi-n~~d-~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~  402 (682)
T PHA02876        334 VNAADRLYITPLHQASTLD--------RNKDIVITLLELGANV-NARD-YCDKTPIHYAAVRNNVVIINTLLDYGADI-E  402 (682)
T ss_pred             CCCcccCCCcHHHHHHHhC--------CcHHHHHHHHHcCCCC-ccCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCc-c
Confidence            7888999999999999865        2446889999999887 4443 48999999999999999999999999998 7


Q ss_pred             cccCCCChHHHHHHHhcc-------------ccccccCCCCCHHHHHHHhC-CcHHHHHHHhccccccccccCCCCchhh
Q 040751          329 LVDNRGWNFLHYAVVTRS-------------LINEGDAMGNTPLHVLAAVR-RNEFYDVMIRNTQVNYDAVNKQNVSVEH  394 (405)
Q Consensus       329 ~~~~~g~t~l~~a~~~~~-------------~~~~~~~~g~t~L~~a~~~~-~~~~v~~Ll~~~g~d~~~~~~~g~t~l~  394 (405)
                      ..+..|.||||+|+..+.             ++|.+|..|+||||+|+..| +.+++++|++. |+|++.+|..|.||++
T Consensus       403 ~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~-Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        403 ALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN-GADVNAINIQNQYPLL  481 (682)
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC-CCCCCCCCCCCCCHHH
Confidence            789999999999986544             68899999999999999987 68999999998 9999999999999999


Q ss_pred             hhhcc
Q 040751          395 ILDYE  399 (405)
Q Consensus       395 ~a~~~  399 (405)
                      +|...
T Consensus       482 ~a~~~  486 (682)
T PHA02876        482 IALEY  486 (682)
T ss_pred             HHHHh
Confidence            99864

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=344.79  Aligned_cols=308  Identities=16%  Similarity=0.120  Sum_probs=165.8

Q ss_pred             CCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCc--HHHHH
Q 040751           42 NVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGH--SGIVT  119 (405)
Q Consensus        42 ~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~  119 (405)
                      +.++|+.|++.|++++..+..|.||||+|  +..|+.+++++|++    .+.+++..|..|.||||+|+..++  .++++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~A--a~~g~~eiv~lLL~----~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~  124 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIA--SKINNNRIVAMLLT----HGADPNACDKQHKTPLYYLSGTDDEVIERIN  124 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHH--HHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHHHHcCCchHHHHH
Confidence            33445555555554444444455555555  55555555555444    234444445555555555444332  44455


Q ss_pred             HHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC
Q 040751          120 FLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRS  199 (405)
Q Consensus       120 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  199 (405)
                      +|+++|++++                 ...+..|.|||| |+..++.+++++|++.|++++ ..+..|+||||+|+..++
T Consensus       125 lLl~~Gadin-----------------~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~t~Lh~A~~~~~  185 (446)
T PHA02946        125 LLVQYGAKIN-----------------NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGKNHIHRHLMSDN  185 (446)
T ss_pred             HHHHcCCCcc-----------------cccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCCCHHHHHHHhcC
Confidence            5555554432                 012444555554 333344555555555555444 444455555555444322


Q ss_pred             --HHHHHHHHHcCCCCcccCCCCCcHHHHHHhcC--CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhc
Q 040751          200 --SDMVLALLENSTSVSHEGPNGKTALHAAAMKF--DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY  275 (405)
Q Consensus       200 --~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  275 (405)
                        .+++++|+++|++++.+|..|.||||+|+..+  +.  ++++.|+. + .+++.++..|.||||+|+..++       
T Consensus       186 ~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~--~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~-------  254 (446)
T PHA02946        186 PKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNV--DIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLS-------  254 (446)
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcH--HHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCC-------
Confidence              34455555555555555555555555555443  22  44444442 2 2244445555555555554431       


Q ss_pred             cccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc-----cccc
Q 040751          276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS-----LINE  350 (405)
Q Consensus       276 ~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~  350 (405)
                       ..++++.|++++...       .++| +++|+..+..++++++.++|.       ..|.||||+|+..++     .+-.
T Consensus       255 -~~~~~~~Ll~~g~~~-------~~~~-~~~a~~~~~~~~~e~l~~~g~-------~~~~TpLh~Aa~~g~~eivk~Ll~  318 (446)
T PHA02946        255 -PAHLINKLLSTSNVI-------TDQT-VNICIFYDRDDVLEIINDKGK-------QYDSTDFKMAVEVGSIRCVKYLLD  318 (446)
T ss_pred             -hHHHHHHHHhCCCCC-------CCcH-HHHHHHcCchHHHHHHHHcCc-------ccCCCHHHHHHHcCCHHHHHHHHH
Confidence             013444444444322       1111 344444444444444443332       346799999998888     2223


Q ss_pred             ccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          351 GDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       351 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      .+..|.||||+|+..++.+++++|+.+ |++++.. ..|.||+++|.+.+..+
T Consensus       319 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~-ga~~n~~-~~G~t~l~~a~~~~~~~  369 (446)
T PHA02946        319 NDIICEDAMYYAVLSEYETMVDYLLFN-HFSVDSV-VNGHTCMSECVRLNNPV  369 (446)
T ss_pred             CCCccccHHHHHHHhCHHHHHHHHHHC-CCCCCCc-cccccHHHHHHHcCCHH
Confidence            456789999999999999999999987 9999986 58999999999887654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.1e-44  Score=332.86  Aligned_cols=288  Identities=14%  Similarity=0.158  Sum_probs=243.5

Q ss_pred             cCCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhh--hcccHHHHHHHHHhCCccccc-ccCCCChH
Q 040751           29 QMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKER--ENVSTEFVEEILEKCPSLLLQ-VNAKGDTP  105 (405)
Q Consensus        29 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~~-~~~~g~t~  105 (405)
                      .-.+|||.|++.|+.++|+.|+++|++++..+..|.||||+|  +..+  ..+++++|++    .+..++. .+..|.||
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A--~~~~~~~~e~v~lLl~----~Gadin~~~d~~g~tp  144 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL--SGTDDEVIERINLLVQ----YGAKINNSVDEEGCGP  144 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCchHHHHHHHHH----cCCCcccccCCCCCcH
Confidence            346799999999999999999999999999999999999999  6544  4677888766    4666764 68899999


Q ss_pred             HHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCC--HHHHHHHHhcCCCCcccc
Q 040751          106 LHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN--VDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       106 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~--~~~~~~Ll~~~~~~~~~~  183 (405)
                      || |+..|+.+++++|+++|++.+                  ..|..|.||||+|+..++  .+++++|++.|++++ .+
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~~------------------~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-~~  204 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEAR------------------IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-KP  204 (446)
T ss_pred             HH-HHHCCChHHHHHHHhcccccc------------------ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-cc
Confidence            97 777899999999999998854                  889999999999987654  689999999999998 78


Q ss_pred             CCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751          184 NNDGKTPLYMAAESR--SSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH  261 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  261 (405)
                      +..|.||||+|+..+  +.+++++|++ |++++.+|..|.||||+|+..++. .++++.|+..+.. .     .++ +++
T Consensus       205 d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~-~~~~~~Ll~~g~~-~-----~~~-~~~  275 (446)
T PHA02946        205 DHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSP-AHLINKLLSTSNV-I-----TDQ-TVN  275 (446)
T ss_pred             CCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCh-HHHHHHHHhCCCC-C-----CCc-HHH
Confidence            999999999999986  7899999985 899999999999999999998773 1677778776643 1     133 378


Q ss_pred             HHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHH
Q 040751          262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA  341 (405)
Q Consensus       262 ~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  341 (405)
                      .++..+         ..++++.+.+++.        ..|.||||+|+..|+.+++++|+++|+        .|+||||+|
T Consensus       276 ~a~~~~---------~~~~~e~l~~~g~--------~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A  330 (446)
T PHA02946        276 ICIFYD---------RDDVLEIINDKGK--------QYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYA  330 (446)
T ss_pred             HHHHcC---------chHHHHHHHHcCc--------ccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHH
Confidence            887766         3457777776653        257799999999999999999999864        468999999


Q ss_pred             HHhcc------------ccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          342 VVTRS------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       342 ~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                      +..++            .+|.+ ..|.||||+|++.++.++++.|+.+
T Consensus       331 ~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~  377 (446)
T PHA02946        331 VLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLH  377 (446)
T ss_pred             HHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhc
Confidence            98887            56765 5899999999999999999999986

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-44  Score=349.90  Aligned_cols=330  Identities=21%  Similarity=0.196  Sum_probs=272.6

Q ss_pred             HHHHHhhcCCCchhhhhHH------HHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHH
Q 040751           33 KFFKAAADGNVEPFKDMAR------EKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPL  106 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~------~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  106 (405)
                      .|+.++..|+.+.+..+++      .|.++...+..++||||.|  +..|+.++++.|++   .++..+...|..|.|||
T Consensus         5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A--~~~g~~e~V~~ll~---~~~~~~~~~~~~~~tpL   79 (682)
T PHA02876          5 DLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQA--LQLRQIDIVEEIIQ---QNPELIYITDHKCHSTL   79 (682)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHH--HHHHhhhHHHHHHH---hCcccchhhchhhcccc
Confidence            5999999999866544443      3444444456699999999  99999999999977   46666777888999999


Q ss_pred             HHHH----------------------------------------------------------------------HhCcHH
Q 040751          107 HVAA----------------------------------------------------------------------KFGHSG  116 (405)
Q Consensus       107 ~~A~----------------------------------------------------------------------~~g~~~  116 (405)
                      |+|+                                                                      ..|+.+
T Consensus        80 h~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~  159 (682)
T PHA02876         80 HTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL  159 (682)
T ss_pred             ccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHH
Confidence            9666                                                                      445677


Q ss_pred             HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHH
Q 040751          117 IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE  196 (405)
Q Consensus       117 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~  196 (405)
                      ++++|+++|+++                  +.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.
T Consensus       160 i~k~Ll~~Gadv------------------n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g~t~L~~A~~  220 (682)
T PHA02876        160 IAEMLLEGGADV------------------NAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSVLECAVD  220 (682)
T ss_pred             HHHHHHhCCCCC------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCCCCHHHHHHH
Confidence            777888887774                  4788899999999999999999999999999987 778899999999999


Q ss_pred             cCCHHHHHHHH-----------------------------HcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751          197 SRSSDMVLALL-----------------------------ENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN  247 (405)
Q Consensus       197 ~~~~~~v~~Ll-----------------------------~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~  247 (405)
                      .++.++++.|+                             +.|++++..+..|.||||+|+..++. ..+++.|++.+.+
T Consensus       221 ~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~-~~iv~lLl~~gad  299 (682)
T PHA02876        221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSL-SRLVPKLLERGAD  299 (682)
T ss_pred             cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCH-HHHHHHHHHCCCC
Confidence            88887776554                             45566777788899999999998875 1366667666655


Q ss_pred             hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhc-CCHHHHHHHHhcCCcc
Q 040751          248 LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ-GNAEIVDAIISKNPEC  326 (405)
Q Consensus       248 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~-~~~~~v~~Ll~~~~~~  326 (405)
                       ++.++..|.||||+|+..|.        ..++++.|+..|.++ +..+ ..|.||||+|+.. ++.+++++|++.|+++
T Consensus       300 -in~~d~~g~TpLh~Aa~~g~--------~~~~v~~Ll~~gadi-n~~d-~~g~TpLh~A~~~~~~~~iv~lLl~~gadi  368 (682)
T PHA02876        300 -VNAKNIKGETPLYLMAKNGY--------DTENIRTLIMLGADV-NAAD-RLYITPLHQASTLDRNKDIVITLLELGANV  368 (682)
T ss_pred             -CCCcCCCCCCHHHHHHHhCC--------CHHHHHHHHHcCCCC-CCcc-cCCCcHHHHHHHhCCcHHHHHHHHHcCCCC
Confidence             78889999999999998872        346888999999887 3333 4889999999985 5789999999999988


Q ss_pred             cccccCCCChHHHHHHHhcc------------ccccccCCCCCHHHHHHHhCC-cHHHHHHHhccccccccccCCCCchh
Q 040751          327 YELVDNRGWNFLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRR-NEFYDVMIRNTQVNYDAVNKQNVSVE  393 (405)
Q Consensus       327 ~~~~~~~g~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~-~~~v~~Ll~~~g~d~~~~~~~g~t~l  393 (405)
                       +.+|..|.||||+|+..++            .++..+..|.||||+|+..++ ..++++|++. |++++.+|..|+|||
T Consensus       369 -n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~-gadin~~d~~G~TpL  446 (682)
T PHA02876        369 -NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDR-GANVNSKNKDLSTPL  446 (682)
T ss_pred             -ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC-CCCCCcCCCCCChHH
Confidence             7899999999999998777            678888899999999998766 5678999987 999999999999999


Q ss_pred             hhhhccc
Q 040751          394 HILDYEH  400 (405)
Q Consensus       394 ~~a~~~~  400 (405)
                      |+|++.+
T Consensus       447 h~Aa~~~  453 (682)
T PHA02876        447 HYACKKN  453 (682)
T ss_pred             HHHHHhC
Confidence            9999865

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.7e-44  Score=337.91  Aligned_cols=333  Identities=17%  Similarity=0.116  Sum_probs=258.6

Q ss_pred             hcCCCchhhhhHHHH-HHHhhh-hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCc--
Q 040751           39 ADGNVEPFKDMAREK-IESLLT-AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGH--  114 (405)
Q Consensus        39 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~--  114 (405)
                      +.++.++|++|++.| ++.+.. +..|.||||+|+....++.+++++|++    .+.+++..|..|.||||+|+..|+  
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence            568999999999999 888866 788999999983223456788888877    578899999999999999999995  


Q ss_pred             HHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH---hCCCHHHHHHHHhcCCCCccccCCCCCcHH
Q 040751          115 SGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV---CHKNVDVVKILTKEDPDYRYSANNDGKTPL  191 (405)
Q Consensus       115 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  191 (405)
                      .++|++|+++|++++                  .++..|.||||+|+   ..++.++++.|++.+....   .....+++
T Consensus       227 ~eIVklLLe~GADVN------------------~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~---~~~~~~~L  285 (764)
T PHA02716        227 ASVIKKIIELGGDMD------------------MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK---VKNIPMIL  285 (764)
T ss_pred             HHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc---cccchhhh
Confidence            589999999999954                  88999999999886   5678999999998753322   11222334


Q ss_pred             H---HHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhc--CCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHc
Q 040751          192 Y---MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYH  266 (405)
Q Consensus       192 ~---~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~--~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  266 (405)
                      +   .|+..|+.+++++|+++|++++.+|..|+||||+|+..  ++.  +++++|++.+.+ ++.+|..|+||||+|+..
T Consensus       286 ~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~--eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        286 HSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIST--DIIKLLHEYGND-LNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCc--hHHHHHHHcCCC-CccCCCCCCCHHHHHHHh
Confidence            4   47889999999999999999999999999999998754  566  999999988765 788999999999998753


Q ss_pred             Chhh-----hhhhccccchhHHHHhhcccccccccccCCccHHHH----HHhcCCHHHHHHHHhcCCcccc-------cc
Q 040751          267 GMYW-----INRFYGNYGTVNLLLETDQSASNIADKDRKMTALHL----AAGQGNAEIVDAIISKNPECYE-------LV  330 (405)
Q Consensus       267 ~~~~-----~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~----A~~~~~~~~v~~Ll~~~~~~~~-------~~  330 (405)
                      ....     .....++.+++++|+++|+++ +... ..|.||||.    |...++.+++++|++.++....       ..
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn-~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll  440 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADI-TAVN-CLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLL  440 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCC-CCcC-CCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhh
Confidence            1000     000013568999999999887 4433 489999993    2345789999999998754210       11


Q ss_pred             cCCCChH--HHHHH------------------------------HhccccccccCCCCCHHHHHHHhCCcH-----HHHH
Q 040751          331 DNRGWNF--LHYAV------------------------------VTRSLINEGDAMGNTPLHVLAAVRRNE-----FYDV  373 (405)
Q Consensus       331 ~~~g~t~--l~~a~------------------------------~~~~~~~~~~~~g~t~L~~a~~~~~~~-----~v~~  373 (405)
                      +..+.+|  +|.++                              ..+..+|..|..|+||||+|+..|+.+     ++++
T Consensus       441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~  520 (764)
T PHA02716        441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVY  520 (764)
T ss_pred             hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHH
Confidence            1222232  22222                              222245777899999999999999874     5599


Q ss_pred             HHhccccccccccCCCCchhhhhhccccc
Q 040751          374 MIRNTQVNYDAVNKQNVSVEHILDYEHIL  402 (405)
Q Consensus       374 Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~  402 (405)
                      |++. |+|+|.+|+.|+||||+|.+++++
T Consensus       521 LL~~-GADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        521 LLSI-QYNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             HHhC-CCCCcccCCCCCCHHHHHHHcCCc
Confidence            9997 999999999999999999998875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=328.12  Aligned_cols=321  Identities=20%  Similarity=0.276  Sum_probs=197.3

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHH-HhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIE-SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      +..|..|+..||++.|+.|++.+.. .+..+..|.||||.|  +..|+.+++++|++    .+..++..+..|.||||.|
T Consensus         2 ~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A--~~~g~~~iv~~Ll~----~Ga~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          2 SQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDA--IRSGDAKIVELFIK----HGADINHINTKIPHPLLTA   75 (434)
T ss_pred             cHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHH
Confidence            3468999999999999999986533 446666799999999  99999999999987    4777888899999999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhH-----HhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEE-----LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN  184 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  184 (405)
                      +..|+.+++++|+++|++.......     .-..+......++.++..|.||||+|+..|+.+++++|++.|++++ ..+
T Consensus        76 ~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d  154 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IED  154 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcC
Confidence            9999999999999999875311000     0000000011123344555555555555555555555555555554 445


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHH
Q 040751          185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA  264 (405)
Q Consensus       185 ~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  264 (405)
                      ..|.||||+|+..++.+++++|+++|++++..+..|.||||.|+..|+.  +++++|++.+.. ++.++..|.||||.|+
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~--~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~  231 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDY--ACIKLLIDHGNH-IMNKCKNGFTPLHNAI  231 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCC-CcCCCCCCCCHHHHHH
Confidence            5555555555555555555555555555555555555555555555555  555555555443 3444555555555555


Q ss_pred             HcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcC-CHHHHHHHHhcCCcccccccCCCChHHHHHHH
Q 040751          265 YHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG-NAEIVDAIISKNPECYELVDNRGWNFLHYAVV  343 (405)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  343 (405)
                      ..+.          +.+++|+ .+.++ +.. +..|.||||+|+..+ +.+++++|+++|++                  
T Consensus       232 ~~~~----------~~i~~Ll-~~~~i-n~~-d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad------------------  280 (434)
T PHA02874        232 IHNR----------SAIELLI-NNASI-NDQ-DIDGSTPLHHAINPPCDIDIIDILLYHKAD------------------  280 (434)
T ss_pred             HCCh----------HHHHHHH-cCCCC-CCc-CCCCCCHHHHHHhcCCcHHHHHHHHHCcCC------------------
Confidence            5431          1333333 23332 222 225555555555543 45555555555544                  


Q ss_pred             hccccccccCCCCCHHHHHHHhC-CcHHHHHHHhccccccccccCCC-Cchhhhhh
Q 040751          344 TRSLINEGDAMGNTPLHVLAAVR-RNEFYDVMIRNTQVNYDAVNKQN-VSVEHILD  397 (405)
Q Consensus       344 ~~~~~~~~~~~g~t~L~~a~~~~-~~~~v~~Ll~~~g~d~~~~~~~g-~t~l~~a~  397 (405)
                          ++.+|..|.|||++|++.+ ..++++.|+.+ ++.++..+..+ .+++..+.
T Consensus       281 ----~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~-~~~~~~~~~~~~~~~~~~~~  331 (434)
T PHA02874        281 ----ISIKDNKGENPIDTAFKYINKDPVIKDIIAN-AVLIKEADKLKDSDFLEHIE  331 (434)
T ss_pred             ----CCCCCCCCCCHHHHHHHhCCccHHHHHHHHh-cCchhhccccchhHHHHHHH
Confidence                4556667777777777766 56677777766 66555554443 34444443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.1e-44  Score=322.51  Aligned_cols=320  Identities=25%  Similarity=0.308  Sum_probs=282.6

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      +.++|.|+..+.+      +++-......|..|.+|||+|  +.....+.+++|++    .+.+....+..+.+|+|+|+
T Consensus        62 d~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a--~~~~~~~~i~~Lls----~gad~~~~n~~~~aplh~A~  129 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKLAISYAKDSADNTPLHAA--VEYNQGDKIQVLLS----YGADTPLRNLNKNAPLHLAA  129 (929)
T ss_pred             hhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHH--hhcchHHHHHHHHh----cCCCCChhhhhccCchhhcc
Confidence            3456666666654      333333446777799999999  99999999999988    58888899999999999999


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP  190 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  190 (405)
                      ..|+.++.+.|+++|++++                  ..|..|.||||.|+..++.|..+.|++.|+++. ..+..|.+|
T Consensus       130 ~~~~~s~L~~Ll~~~~dvn------------------l~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~  190 (929)
T KOG0510|consen  130 DSGNYSCLKLLLDYGADVN------------------LEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFP  190 (929)
T ss_pred             ccchHHHHHHHHHhcCCcc------------------ccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCch
Confidence            9999999999999998854                  889999999999999999998899999999997 788999999


Q ss_pred             HHHHHHcCCHHHHHHHHH-----cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh--------------hhhh
Q 040751          191 LYMAAESRSSDMVLALLE-----NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN--------------LIKE  251 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~-----~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~--------------~~~~  251 (405)
                      +|.|+.+|..|+.+.++.     ++..++..+..+.+|||.|+..|+.  ++++.++..+..              .++.
T Consensus       191 iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~--e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  191 IHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDI--EMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             HHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCH--HHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            999999999999999998     6788999999999999999999999  999999986542              2455


Q ss_pred             cccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHh-cCCcccccc
Q 040751          252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS-KNPECYELV  330 (405)
Q Consensus       252 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~  330 (405)
                      .|.+|.||||+|++.|         ..+.++.|+..|+++ +... .++.||||.|++.|+...++.|++ .+....+..
T Consensus       269 ~d~dg~tpLH~a~r~G---------~~~svd~Ll~~Ga~I-~~kn-~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~  337 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQG---------GPESVDNLLGFGASI-NSKN-KDEESPLHFAAIYGRINTVERLLQESDTRLLNES  337 (929)
T ss_pred             ccccCCchHHHHHHcC---------ChhHHHHHHHcCCcc-cccC-CCCCCchHHHHHcccHHHHHHHHhCcCccccccc
Confidence            6889999999999999         668999999999988 4444 488999999999999999999999 666677888


Q ss_pred             cCCCChHHHHHHHhcc-------------ccc--cccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhh
Q 040751          331 DNRGWNFLHYAVVTRS-------------LIN--EGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI  395 (405)
Q Consensus       331 ~~~g~t~l~~a~~~~~-------------~~~--~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~  395 (405)
                      |-.|.||||.|+.+|+             ..+  ..|.+|.||||.|+.+|+..+|+.|+.+ ||++..+|+.|.+++++
T Consensus       338 D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~-Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  338 DLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISH-GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHc-CCceeeccccccccccc
Confidence            9999999999998888             233  4599999999999999999999999998 99999999999999995

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-43  Score=325.96  Aligned_cols=339  Identities=13%  Similarity=0.102  Sum_probs=262.6

Q ss_pred             CCHHHHHHhhcC---CCchhhhhHHHHHHHhhhhccccchhhHhhhhhhh--hcccHHHHHHHHHhCCcccccccCCCCh
Q 040751           30 MDPKFFKAAADG---NVEPFKDMAREKIESLLTAKTRNTILHINIISKER--ENVSTEFVEEILEKCPSLLLQVNAKGDT  104 (405)
Q Consensus        30 ~~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~g~t  104 (405)
                      -.+|||+|+..|   +.|+|+.||++|++++..+..|+||||+|  +..+  +.+++++|++.  ..+...+..+..+.+
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~A--a~~~~~~~eIv~~Ll~~--~~~~~~~~~~~~~d~  116 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVY--SKRKYVKSQIVHLLISS--YSNASNELTSNINDF  116 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHH--HHcCCCcHHHHHHHHhc--CCCCCcccccccCCc
Confidence            357899999997   58999999999999999999999999999  7755  78999999872  123344567777889


Q ss_pred             HHHHHHH--hCcHHHHHHHHH-ccCCCCCchhHHhhhhhHHHHHhhhcc-CCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          105 PLHVAAK--FGHSGIVTFLVE-RAKLPQHENEELESGVGAARQMIKMTN-NEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       105 ~L~~A~~--~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      |||.++.  +++.++|++|+. .+.+++..              .+..+ ..|.+|++++...++.+++++|+++|++++
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~--------------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKN--------------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhh--------------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            9998888  999999999997 55554300              11112 378999999999999999999999999984


Q ss_pred             -c------ccCCCCCcHHHHHH------HcCCHHHHHHHHHcCCCCcccCCCCCcHHHH--HHhcCCccHHHHHHHHH--
Q 040751          181 -Y------SANNDGKTPLYMAA------ESRSSDMVLALLENSTSVSHEGPNGKTALHA--AAMKFDLVDTALRKLLE--  243 (405)
Q Consensus       181 -~------~~~~~g~t~L~~a~------~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~--a~~~~~~~~~~v~~Ll~--  243 (405)
                       +      ..+..+.|.||+++      .+++.+++++|+++|++++.+|..|+||||+  ++..++.  +++++|+.  
T Consensus       183 g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~--eiv~~Li~~~  260 (672)
T PHA02730        183 GYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDI--EIVKLLIKDV  260 (672)
T ss_pred             ccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccH--HHHHHHHhcc
Confidence             1      12223345666444      3467999999999999999999999999996  4445566  99999998  


Q ss_pred             ------------------------------hhhhhhhh--------------------cccCCCC---------------
Q 040751          244 ------------------------------KKENLIKE--------------------TDQYGWT---------------  258 (405)
Q Consensus       244 ------------------------------~~~~~~~~--------------------~~~~~~t---------------  258 (405)
                                                    .+.+ ...                    .+..|.+               
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~  339 (672)
T PHA02730        261 DTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQD  339 (672)
T ss_pred             ccccccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccc
Confidence                                          1111 111                    2222322               


Q ss_pred             ------HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCC----HHHHHHHHhcCCc-cc
Q 040751          259 ------PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN----AEIVDAIISKNPE-CY  327 (405)
Q Consensus       259 ------~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~-~~  327 (405)
                            .|+.-...+.      ..+.+++++|+++|++++.  . ..|.||||+|+..++    .+++++|+++|++ ..
T Consensus       340 ~~~~q~~l~~Y~~~~~------~v~ieIvelLIs~GAdIN~--k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dI  410 (672)
T PHA02730        340 ESIVQAMLINYLHYGD------MVSIPILRCMLDNGATMDK--T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAI  410 (672)
T ss_pred             hhHHHHHHHHHHhcCC------cCcHHHHHHHHHCCCCCCc--C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccc
Confidence                  2222222220      0357899999999999853  2 489999999998875    8999999999984 34


Q ss_pred             ccccCCCChHHHH---HHH---------------------hccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccc
Q 040751          328 ELVDNRGWNFLHY---AVV---------------------TRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD  383 (405)
Q Consensus       328 ~~~~~~g~t~l~~---a~~---------------------~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~  383 (405)
                      +.+|..|.||||.   +..                     .|.++|.+|..|.||||+|+..++.+++++|+++ |++++
T Consensus       411 N~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~-GAdIN  489 (672)
T PHA02730        411 NHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY-GASVN  489 (672)
T ss_pred             cccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC-CCCCC
Confidence            7889999999984   221                     2337999999999999999999999999999998 99999


Q ss_pred             cccC-CCCchhhhhhcc
Q 040751          384 AVNK-QNVSVEHILDYE  399 (405)
Q Consensus       384 ~~~~-~g~t~l~~a~~~  399 (405)
                      .+|. .|+||+++|...
T Consensus       490 ~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        490 TTSRSIINTAIQKSSYR  506 (672)
T ss_pred             CCCCcCCcCHHHHHHHh
Confidence            9997 699999999863

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.6e-42  Score=327.55  Aligned_cols=337  Identities=13%  Similarity=0.032  Sum_probs=245.8

Q ss_pred             CHHHHHHhhc---CCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751           31 DPKFFKAAAD---GNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH  107 (405)
Q Consensus        31 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  107 (405)
                      .+|||+|+..   |+.++|+.|++.|++.+..+..|+||||+|  +..|+.++++.+.+.+-......+..+  ..++++
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~A--a~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~  108 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEY--TNSRHVKVNKDIAMALLEATGYSNIND--FNIFSY  108 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHH--HHcCChhHHHHHHHHHHhccCCCCCCC--cchHHH
Confidence            5689997555   889999999999999998888899999999  999997776655554432222122222  237788


Q ss_pred             HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH--hCCCHHHHHHHHhcCCCCccc--c
Q 040751          108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV--CHKNVDVVKILTKEDPDYRYS--A  183 (405)
Q Consensus       108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~--~  183 (405)
                      +|+..|+.++|++|+++|++++                  ..+..|.||||.++  ..|+.+++++|+++|++++..  .
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin------------------~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~  170 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLS------------------VKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDED  170 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCC------------------ccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccc
Confidence            8999999999999999999965                  88899999999654  578999999999999998721  1


Q ss_pred             CCCC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHH
Q 040751          184 NNDG-----------KTPLYMAAE-----------SRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKL  241 (405)
Q Consensus       184 ~~~g-----------~t~L~~a~~-----------~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~L  241 (405)
                      +..|           .||||+|+.           .++.+++++|+++|++++.+|..|.||||+|+..++...++++.|
T Consensus       171 ~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~L  250 (661)
T PHA02917        171 DEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLL  250 (661)
T ss_pred             cccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHH
Confidence            2233           599999986           468999999999999999999999999999999998633689988


Q ss_pred             HHhhhhhh---hhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhc------------------------------
Q 040751          242 LEKKENLI---KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETD------------------------------  288 (405)
Q Consensus       242 l~~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~------------------------------  288 (405)
                      +. +.+..   ...+..+.+++++|+.-++......-.+.++++.|++.|                              
T Consensus       251 i~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (661)
T PHA02917        251 MK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSD  329 (661)
T ss_pred             Hh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchH
Confidence            75 44321   134556777777777321000000000234455555544                              


Q ss_pred             ---------------------------ccccccccccCCccHHHHHHhcCCHHHHHHHHh-cCCcccccccCCCChHHHH
Q 040751          289 ---------------------------QSASNIADKDRKMTALHLAAGQGNAEIVDAIIS-KNPECYELVDNRGWNFLHY  340 (405)
Q Consensus       289 ---------------------------~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~  340 (405)
                                                 +++. .. +.+|.++.    ...+.+++++|+. .|+++.. .+..|+||||.
T Consensus       330 ~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn-~~-~~~g~~~~----~~~~~~~i~~LL~~~ga~~~~-~~~~G~TpL~~  402 (661)
T PHA02917        330 VLQHILIEYMTFGDIDIPLVECMLEYGAVVN-KE-AIHGYFRN----INIDSYTMKYLLKKEGGDAVN-HLDDGEIPIGH  402 (661)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHcCCCCC-CC-Cccccchh----hcCCHHHHHHHHHhcCCCccc-cCCCCCChhHH
Confidence                                       4442 11 12333321    1333444444444 2444323 35569999998


Q ss_pred             HHHh-----------------------------------ccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccc
Q 040751          341 AVVT-----------------------------------RSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV  385 (405)
Q Consensus       341 a~~~-----------------------------------~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~  385 (405)
                      |+++                                   |.++|.+|..|.||||+|+..++.+++++|++. |+|++.+
T Consensus       403 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-GAdin~~  481 (661)
T PHA02917        403 LCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLES-GSDVNIR  481 (661)
T ss_pred             HHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-cCCCCCC
Confidence            8643                                   226899999999999999999999999999997 9999999


Q ss_pred             cCCCCchhhhhhc
Q 040751          386 NKQNVSVEHILDY  398 (405)
Q Consensus       386 ~~~g~t~l~~a~~  398 (405)
                      |..|+|||++|..
T Consensus       482 d~~G~T~L~~A~~  494 (661)
T PHA02917        482 SNNGYTCIAIAIN  494 (661)
T ss_pred             CCCCCCHHHHHHH
Confidence            9999999999985

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-42  Score=326.30  Aligned_cols=295  Identities=20%  Similarity=0.225  Sum_probs=258.2

Q ss_pred             HHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhh---hcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751           35 FKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKER---ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK  111 (405)
Q Consensus        35 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  111 (405)
                      +.++..++++.|+.|++.|++.+..+..|.||||+|  +..+   +.+++++|++    .+.+++..+..|.||||+|+.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a--~~~~~~~~~~iv~~Ll~----~Gadin~~~~~g~TpLh~A~~   92 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLY--LHYSSEKVKDIVRLLLE----AGADVNAPERCGFTPLHLYLY   92 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHH--HHhcCCChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence            667899999999999999999998888899999999  8887   8888888876    588899999999999999999


Q ss_pred             hC-cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH--hCCCHHHHHHHHhcCCCCccccCCCCC
Q 040751          112 FG-HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV--CHKNVDVVKILTKEDPDYRYSANNDGK  188 (405)
Q Consensus       112 ~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~  188 (405)
                      .| ..+++++|+++|++++                  ..+..|.||||+|+  ..++.+++++|++.|++++ ..+..|.
T Consensus        93 ~~~~~~iv~lLl~~ga~in------------------~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~  153 (471)
T PHA03095         93 NATTLDVIKLLIKAGADVN------------------AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGM  153 (471)
T ss_pred             cCCcHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCC
Confidence            99 5999999999999854                  88899999999999  5668999999999999998 7889999


Q ss_pred             cHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHc
Q 040751          189 TPLYMAAESR--SSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYH  266 (405)
Q Consensus       189 t~L~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  266 (405)
                      ||||+|+..+  +.+++++|+++|++++..+..|.||||.++.......++++.|+..+.+ ++.++..|.||||+|+..
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~  232 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATG  232 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhc
Confidence            9999999876  6899999999999999999999999999997644333889999988766 788999999999999998


Q ss_pred             ChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc
Q 040751          267 GMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS  346 (405)
Q Consensus       267 ~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  346 (405)
                      |..       ...+++.|++.+.++ +..+ ..|.||||+|+..|+.+++++|++.|++                     
T Consensus       233 ~~~-------~~~~v~~ll~~g~di-n~~d-~~g~TpLh~A~~~~~~~~v~~LL~~gad---------------------  282 (471)
T PHA03095        233 SSC-------KRSLVLPLLIAGISI-NARN-RYGQTPLHYAAVFNNPRACRRLIALGAD---------------------  282 (471)
T ss_pred             CCc-------hHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------
Confidence            743       224778888998877 4444 4899999999999999999999999987                     


Q ss_pred             ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751          347 LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK  387 (405)
Q Consensus       347 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~  387 (405)
                       ++.+|..|.||||+|+..|+.++++.||+. +++++..+.
T Consensus       283 -~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~-~~~~~~~~~  321 (471)
T PHA03095        283 -INAVSSDGNTPLSLMVRNNNGRAVRAALAK-NPSAETVAA  321 (471)
T ss_pred             -CcccCCCCCCHHHHHHHhCCHHHHHHHHHh-CCCHHHHHH
Confidence             456677888999999999999999999987 888764443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=2e-42  Score=313.81  Aligned_cols=333  Identities=20%  Similarity=0.262  Sum_probs=280.8

Q ss_pred             hhhhhhcCCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCC
Q 040751           23 GEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKG  102 (405)
Q Consensus        23 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g  102 (405)
                      -..+-+.+..+.+.+...   |.++.+++....+...+..|.+++|.|  +..+..     +.+     .......|..|
T Consensus        24 ~~~~~~d~~~~~~~~~~d---D~~tli~~kns~~~~~~~~gd~~~~~~--~~~~y~-----~~~-----~~~~~a~D~~~   88 (929)
T KOG0510|consen   24 IRQPVADLDSQALADTLD---DRHTLILEKNSSTPGKRAFGDTELHHA--SARNYI-----LSK-----LAISYAKDSAD   88 (929)
T ss_pred             hhhhhHHHhHHHHHhhHH---HHHHHHHHhccccchhhhhchhHHHHH--Hhhcch-----hhh-----hhhhhhhhccc
Confidence            344445555555555444   677777777666665555699999999  666643     111     22345678889


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      .||||.|+.....+.|+.|++.|++..                  ..+.++.+|+|+|+..++.++++.|+++|++++ .
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~------------------~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvn-l  149 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTP------------------LRNLNKNAPLHLAADSGNYSCLKLLLDYGADVN-L  149 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCC------------------hhhhhccCchhhccccchHHHHHHHHHhcCCcc-c
Confidence            999999999999999999999999965                  788899999999999999999999999999998 7


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhh----hhhhhhcccCCCC
Q 040751          183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK----ENLIKETDQYGWT  258 (405)
Q Consensus       183 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~----~~~~~~~~~~~~t  258 (405)
                      .+..+.||||.|+..++.|..+.|++.|+++...|.++.+|+|.|++++..  ++.+..+...    ...++..+..+.|
T Consensus       150 ~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~--e~mEi~l~~~g~~r~~~in~~~n~~~~  227 (929)
T KOG0510|consen  150 EDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSK--ECMEIFLPEHGYERQTHINFDNNEKAT  227 (929)
T ss_pred             cccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcch--hhhhhhhccccchhhcccccccCCCCc
Confidence            899999999999999999988999999999999999999999999999999  9999998822    2237788899999


Q ss_pred             HHHHHHHcChhhhhhhccccchhHHHHhhcccccccc-------------cccCCccHHHHHHhcCCHHHHHHHHhcCCc
Q 040751          259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIA-------------DKDRKMTALHLAAGQGNAEIVDAIISKNPE  325 (405)
Q Consensus       259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~-------------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  325 (405)
                      |||.|+..|+.         ++++.+++.+.......             .+..|.||||+|++.|+.+.++.|+..|++
T Consensus       228 pLhlAve~g~~---------e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~  298 (929)
T KOG0510|consen  228 PLHLAVEGGDI---------EMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS  298 (929)
T ss_pred             chhhhhhcCCH---------HHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc
Confidence            99999999954         55566665554443322             124789999999999999999999999999


Q ss_pred             ccccccCCCChHHHHHHHhcc--------------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccc---cccCC
Q 040751          326 CYELVDNRGWNFLHYAVVTRS--------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD---AVNKQ  388 (405)
Q Consensus       326 ~~~~~~~~g~t~l~~a~~~~~--------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~---~~~~~  388 (405)
                      + +.++.++.||||.|+.+|+              ++|..|..|.||||+|+++|+.++++.||.. ||+..   ..|..
T Consensus       299 I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~-GA~~~~~~e~D~d  376 (929)
T KOG0510|consen  299 I-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK-GALFLNMSEADSD  376 (929)
T ss_pred             c-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc-ChhhhcccccccC
Confidence            9 8899999999999999988              6888899999999999999999999999997 99888   56999


Q ss_pred             CCchhhhhhccccc
Q 040751          389 NVSVEHILDYEHIL  402 (405)
Q Consensus       389 g~t~l~~a~~~~~~  402 (405)
                      |.||||.|.+.|..
T Consensus       377 g~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  377 GNTALHLAAKYGNT  390 (929)
T ss_pred             CchhhhHHHHhccH
Confidence            99999999988753

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=313.52  Aligned_cols=275  Identities=19%  Similarity=0.173  Sum_probs=231.9

Q ss_pred             hhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhC---cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhc
Q 040751           73 SKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFG---HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT  149 (405)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (405)
                      +..++.+++++|++    .+.+++..+..|.||||+|+..|   +.+++++|+++|++++                  ..
T Consensus        22 ~~~~~~~~v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin------------------~~   79 (471)
T PHA03095         22 ASNVTVEEVRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN------------------AP   79 (471)
T ss_pred             CCCCCHHHHHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC------------------CC
Confidence            77777888888876    47778888999999999999988   8999999999998854                  77


Q ss_pred             cCCCchHhHHHHhCC-CHHHHHHHHhcCCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 040751          150 NNEKNTALHEAVCHK-NVDVVKILTKEDPDYRYSANNDGKTPLYMAA--ESRSSDMVLALLENSTSVSHEGPNGKTALHA  226 (405)
Q Consensus       150 ~~~g~t~L~~A~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~  226 (405)
                      +..|.||||+|+..+ ..+++++|+++|++++ ..+..|.||||+|+  ..++.+++++|+++|++++..+..|.||||.
T Consensus        80 ~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~  158 (471)
T PHA03095         80 ERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV  158 (471)
T ss_pred             CCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            888999999999999 5999999999999987 78888999999999  4567899999999999999999999999999


Q ss_pred             HHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHH
Q 040751          227 AAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHL  306 (405)
Q Consensus       227 a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~  306 (405)
                      |+..+....++++.|++.+.+ ++..+..|.||||.++....       +..++++.|++.|.++ +..+ ..|.||||+
T Consensus       159 a~~~~~~~~~iv~~Ll~~g~~-~~~~d~~g~t~Lh~~~~~~~-------~~~~i~~~Ll~~g~~~-~~~d-~~g~tpLh~  228 (471)
T PHA03095        159 LLKSRNANVELLRLLIDAGAD-VYAVDDRFRSLLHHHLQSFK-------PRARIVRELIRAGCDP-AATD-MLGNTPLHS  228 (471)
T ss_pred             HHHcCCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHHCC-------CcHHHHHHHHHcCCCC-cccC-CCCCCHHHH
Confidence            888764333888999888776 45558889999999886531       2456888899988876 4333 488999999


Q ss_pred             HHhcCCH--HHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccccc
Q 040751          307 AAGQGNA--EIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA  384 (405)
Q Consensus       307 A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~  384 (405)
                      |+..+..  .+++.|++.|++                      +|.+|..|+||||+|+..|+.+++++||+. |+|++.
T Consensus       229 Aa~~~~~~~~~v~~ll~~g~d----------------------in~~d~~g~TpLh~A~~~~~~~~v~~LL~~-gad~n~  285 (471)
T PHA03095        229 MATGSSCKRSLVLPLLIAGIS----------------------INARNRYGQTPLHYAAVFNNPRACRRLIAL-GADINA  285 (471)
T ss_pred             HHhcCCchHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcc
Confidence            9988864  577888887766                      566778899999999999999999999997 999999


Q ss_pred             ccCCCCchhhhhhcccccC
Q 040751          385 VNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       385 ~~~~g~t~l~~a~~~~~~~  403 (405)
                      +|..|+||+++|+..+..+
T Consensus       286 ~~~~g~tpl~~A~~~~~~~  304 (471)
T PHA03095        286 VSSDGNTPLSLMVRNNNGR  304 (471)
T ss_pred             cCCCCCCHHHHHHHhCCHH
Confidence            9999999999999887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=314.45  Aligned_cols=285  Identities=22%  Similarity=0.260  Sum_probs=250.7

Q ss_pred             CCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHH-----HHHhCcHH
Q 040751           42 NVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHV-----AAKFGHSG  116 (405)
Q Consensus        42 ~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~-----A~~~g~~~  116 (405)
                      ..+.++++++.+-.....+..+.||||+|  +..++.+++++|++    .+..++..+..+.||||+     |+..|+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~A--~~~~~~~ivk~Ll~----~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~   87 (480)
T PHA03100         14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLA--KEARNIDVVKILLD----NGADINSSTKNNSTPLHYLSNIKYNLTDVKE   87 (480)
T ss_pred             HHHHHHHHHhcCccchhhhcccchhhhhh--hccCCHHHHHHHHH----cCCCCCCccccCcCHHHHHHHHHHHhhchHH
Confidence            34567777766644446667799999999  99999999999987    467788888999999999     99999999


Q ss_pred             HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH--hCCCHHHHHHHHhcCCCCccccCCCCCcHHHHH
Q 040751          117 IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV--CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMA  194 (405)
Q Consensus       117 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a  194 (405)
                      ++++|+++|++++                  ..+..|.||||+|+  ..|+.+++++|+++|++++ ..+..|.||||+|
T Consensus        88 iv~~Ll~~ga~i~------------------~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A  148 (480)
T PHA03100         88 IVKLLLEYGANVN------------------APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHLY  148 (480)
T ss_pred             HHHHHHHCCCCCC------------------CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence            9999999999854                  78889999999999  9999999999999999987 7888999999999


Q ss_pred             HHcC--CHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCC------CCHHHHHHHc
Q 040751          195 AESR--SSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYG------WTPIHYAAYH  266 (405)
Q Consensus       195 ~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~------~t~l~~a~~~  266 (405)
                      +..+  +.+++++|+++|++++.++..|.||||.|+..++.  +++++|++.+.+ ++..+..|      .||+|.|+..
T Consensus       149 ~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~--~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~  225 (480)
T PHA03100        149 LESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNI--DVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACY  225 (480)
T ss_pred             HHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCH--HHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHh
Confidence            9999  99999999999999999999999999999999999  999999998876 56677777      8999999998


Q ss_pred             ChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc
Q 040751          267 GMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS  346 (405)
Q Consensus       267 ~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  346 (405)
                      +..       ..+++++|++.|.++ +..+ ..|.||||+|+..++.+++++|+++|++                     
T Consensus       226 ~~~-------~~~iv~~Ll~~g~di-n~~d-~~g~TpL~~A~~~~~~~iv~~Ll~~gad---------------------  275 (480)
T PHA03100        226 NEI-------TLEVVNYLLSYGVPI-NIKD-VYGFTPLHYAVYNNNPEFVKYLLDLGAN---------------------  275 (480)
T ss_pred             CcC-------cHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------
Confidence            831       157999999999876 4334 4899999999999999999999999986                     


Q ss_pred             ccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccccccc
Q 040751          347 LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVN  386 (405)
Q Consensus       347 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~  386 (405)
                       ++.+|..|.|||++|+..++.+++++|+++ |++++..+
T Consensus       276 -~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~-g~~i~~i~  313 (480)
T PHA03100        276 -PNLVNKYGDTPLHIAILNNNKEIFKLLLNN-GPSIKTII  313 (480)
T ss_pred             -CCccCCCCCcHHHHHHHhCCHHHHHHHHhc-CCCHHHHH
Confidence             456777889999999999999999999998 99988644

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-40  Score=306.34  Aligned_cols=295  Identities=19%  Similarity=0.223  Sum_probs=248.7

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHH-------------------HHh
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI-------------------LEK   90 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~-------------------~~~   90 (405)
                      ..+|||.|+..|+.++|++|++.|++.+..+..|.||||+|  +..|+.+++++|++.                   +-.
T Consensus        35 ~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         35 TTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTA--IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            45789999999999999999999999888888899999999  999999999999762                   223


Q ss_pred             CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHH
Q 040751           91 CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK  170 (405)
Q Consensus        91 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  170 (405)
                      .+.+++..+..|.||||+|+..|+.++|++|+++|++++                  .++..|.||||+|+..|+.++++
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n------------------~~d~~g~tpLh~A~~~~~~~iv~  174 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN------------------IEDDNGCYPIHIAIKHNFFDIIK  174 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC------------------CcCCCCCCHHHHHHHCCcHHHHH
Confidence            445677788999999999999999999999999999854                  78899999999999999999999


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhh
Q 040751          171 ILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIK  250 (405)
Q Consensus       171 ~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~  250 (405)
                      +|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..+.   ..+.+|+. +. .++
T Consensus       175 ~Ll~~g~~~n-~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~---~~i~~Ll~-~~-~in  248 (434)
T PHA02874        175 LLLEKGAYAN-VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR---SAIELLIN-NA-SIN  248 (434)
T ss_pred             HHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh---HHHHHHHc-CC-CCC
Confidence            9999999987 778899999999999999999999999999999999999999999998764   56666663 33 378


Q ss_pred             hcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcC-CHHHHHHHHhcCCccccc
Q 040751          251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG-NAEIVDAIISKNPECYEL  329 (405)
Q Consensus       251 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~~~  329 (405)
                      .++..|.||||+|+..+        .+.+++++|+++++++ +..+. .|.||||+|++.+ ..++++.|+..+...   
T Consensus       249 ~~d~~G~TpLh~A~~~~--------~~~~iv~~Ll~~gad~-n~~d~-~g~TpL~~A~~~~~~~~~ik~ll~~~~~~---  315 (434)
T PHA02874        249 DQDIDGSTPLHHAINPP--------CDIDIIDILLYHKADI-SIKDN-KGENPIDTAFKYINKDPVIKDIIANAVLI---  315 (434)
T ss_pred             CcCCCCCCHHHHHHhcC--------CcHHHHHHHHHCcCCC-CCCCC-CCCCHHHHHHHhCCccHHHHHHHHhcCch---
Confidence            88999999999999865        2457999999999987 44443 8999999999987 678999999877543   


Q ss_pred             ccCCCChHHHHHHHhccccccccC-CCCCHHHHHHHhCCcHHHHHHHhccccccc
Q 040751          330 VDNRGWNFLHYAVVTRSLINEGDA-MGNTPLHVLAAVRRNEFYDVMIRNTQVNYD  383 (405)
Q Consensus       330 ~~~~g~t~l~~a~~~~~~~~~~~~-~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~  383 (405)
                                         +..+. .+.+++..+...++.++.+++.+. ..++.
T Consensus       316 -------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c-~~ei~  350 (434)
T PHA02874        316 -------------------KEADKLKDSDFLEHIEIKDNKEFSDFIKEC-NEEIE  350 (434)
T ss_pred             -------------------hhccccchhHHHHHHHHhccchHHHHHHHH-HHHHH
Confidence                               12222 335678777777777777777665 44433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.5e-40  Score=310.98  Aligned_cols=322  Identities=15%  Similarity=0.091  Sum_probs=205.3

Q ss_pred             CCHHHHHHhh--cCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhc--ccHHHHHHHHHhCCcccccccCCCChH
Q 040751           30 MDPKFFKAAA--DGNVEPFKDMAREKIESLLTAKTRNTILHINIISKEREN--VSTEFVEEILEKCPSLLLQVNAKGDTP  105 (405)
Q Consensus        30 ~~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~g~t~  105 (405)
                      -.+|||.|+.  .++.++|++|++.|++.+..+..|.||||+|  +..|+.  +++++|++    .+.+++.++..|.||
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~A--a~~g~~~~eIVklLLe----~GADVN~kD~~G~TP  250 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTY--LITGNVCASVIKKIIE----LGGDMDMKCVNGMSP  250 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCCCHHHHHHHHH----cCCCCCCCCCCCCCH
Confidence            3568998864  4678999999999999999999999999999  888854  78888877    578899999999999


Q ss_pred             HHHHH---HhCcHHHHHHHHHccCCCCCchhH--Hhh--------hhhHH------HHHhhhccCCCchHhHHHHh--CC
Q 040751          106 LHVAA---KFGHSGIVTFLVERAKLPQHENEE--LES--------GVGAA------RQMIKMTNNEKNTALHEAVC--HK  164 (405)
Q Consensus       106 L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~~--~~~--------~~~~~------~~~~~~~~~~g~t~L~~A~~--~~  164 (405)
                      ||+|+   ..++.++++.|++.+.........  ...        .....      ...++.+|..|.||||+|+.  .+
T Consensus       251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~  330 (764)
T PHA02716        251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI  330 (764)
T ss_pred             HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCC
Confidence            99875   344556666555543221100000  000        00000      01144667778888887654  35


Q ss_pred             CHHHHHHHHhcCCCCccccCCCCCcHHHHHHH--------------cCCHHHHHHHHHcCCCCcccCCCCCcHHHHH-H-
Q 040751          165 NVDVVKILTKEDPDYRYSANNDGKTPLYMAAE--------------SRSSDMVLALLENSTSVSHEGPNGKTALHAA-A-  228 (405)
Q Consensus       165 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~--------------~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a-~-  228 (405)
                      +.+++++|++.|++++ .++..|.||||+|+.              .++.+++++|+++|++++.++..|.||||.+ + 
T Consensus       331 ~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~  409 (764)
T PHA02716        331 STDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICT  409 (764)
T ss_pred             CchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHH
Confidence            6778888888888776 677778888887764              2567888888888888888888888888732 2 


Q ss_pred             --hcCCccHHHHHHHHHhhhhhhh-------hcccCCCCH--HHHHHHcChhhhhhhcc---------ccchhHHHHhhc
Q 040751          229 --MKFDLVDTALRKLLEKKENLIK-------ETDQYGWTP--IHYAAYHGMYWINRFYG---------NYGTVNLLLETD  288 (405)
Q Consensus       229 --~~~~~~~~~v~~Ll~~~~~~~~-------~~~~~~~t~--l~~a~~~~~~~~~~~l~---------~~~~~~~Ll~~~  288 (405)
                        ..+..  +++++|+..+.....       .....+.+|  +|.++..+......+..         ..++...++..+
T Consensus       410 a~n~~~~--dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~  487 (764)
T PHA02716        410 AQNYMYY--DIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIER  487 (764)
T ss_pred             HHhcChH--HHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhh
Confidence              22445  777777765432100       001122222  44444443222211110         112222333333


Q ss_pred             ccccccccccCCccHHHHHHhcCCH-----HHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHH
Q 040751          289 QSASNIADKDRKMTALHLAAGQGNA-----EIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLA  363 (405)
Q Consensus       289 ~~~~~~~~~~~g~t~l~~A~~~~~~-----~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~  363 (405)
                      ... +.. +..|+||||+|+..|+.     +++++|++.|+++                      |.+|..|+||||+|+
T Consensus       488 ~nv-N~~-D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADI----------------------N~~d~~G~TPLh~A~  543 (764)
T PHA02716        488 YNN-AVC-ETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNI----------------------NIPTKNGVTPLMLTM  543 (764)
T ss_pred             ccc-ccc-CCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCC----------------------cccCCCCCCHHHHHH
Confidence            322 222 34899999999998876     5569999999885                      455666667777777


Q ss_pred             HhCCc-----HHHHHHHhccccccccc
Q 040751          364 AVRRN-----EFYDVMIRNTQVNYDAV  385 (405)
Q Consensus       364 ~~~~~-----~~v~~Ll~~~g~d~~~~  385 (405)
                      +.|+.     ++|+.||++ |++++..
T Consensus       544 ~~g~~~~~~~eIvk~LL~~-ga~~~~~  569 (764)
T PHA02716        544 RNNRLSGHQWYIVKNILDK-RPNVDIV  569 (764)
T ss_pred             HcCCccccHHHHHHHHHhc-CCCcchH
Confidence            77655     777777776 7776654

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-40  Score=309.01  Aligned_cols=257  Identities=27%  Similarity=0.352  Sum_probs=233.4

Q ss_pred             CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHH-----HHhCCC
Q 040751           91 CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHE-----AVCHKN  165 (405)
Q Consensus        91 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-----A~~~~~  165 (405)
                      .+...+..+..+.||||.|+..|+.++|++|+++|++++                  ..+..+.||||+     |+..++
T Consensus        24 ~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~------------------~~~~~~~t~L~~~~~~~a~~~~~   85 (480)
T PHA03100         24 EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADIN------------------SSTKNNSTPLHYLSNIKYNLTDV   85 (480)
T ss_pred             cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCC------------------CccccCcCHHHHHHHHHHHhhch
Confidence            356666778899999999999999999999999999864                  677889999999     999999


Q ss_pred             HHHHHHHHhcCCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcC--CccHHHHHHH
Q 040751          166 VDVVKILTKEDPDYRYSANNDGKTPLYMAA--ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKF--DLVDTALRKL  241 (405)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~--~~~~~~v~~L  241 (405)
                      .+++++|++.|++++ ..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||.|+..+  +.  +++++|
T Consensus        86 ~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~--~iv~~L  162 (480)
T PHA03100         86 KEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDL--KILKLL  162 (480)
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChH--HHHHHH
Confidence            999999999999996 88999999999999  999999999999999999999999999999999999  88  999999


Q ss_pred             HHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCC------ccHHHHHHhcCC--H
Q 040751          242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK------MTALHLAAGQGN--A  313 (405)
Q Consensus       242 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g------~t~l~~A~~~~~--~  313 (405)
                      ++.+.+ ++.++..|.||||+|+..|         +.+++++|+++|++.. .... .|      .||+|.|+..++  .
T Consensus       163 l~~g~d-in~~d~~g~tpL~~A~~~~---------~~~iv~~Ll~~ga~~~-~~~~-~~~~~~~~~t~l~~a~~~~~~~~  230 (480)
T PHA03100        163 IDKGVD-INAKNRYGYTPLHIAVEKG---------NIDVIKFLLDNGADIN-AGDI-ETLLFTIFETPLHIAACYNEITL  230 (480)
T ss_pred             HHCCCC-cccccCCCCCHHHHHHHhC---------CHHHHHHHHHcCCCcc-CCCC-CCCcHHHHHhHHHHHHHhCcCcH
Confidence            998876 7888889999999999998         5689999999998873 3332 45      899999999999  9


Q ss_pred             HHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchh
Q 040751          314 EIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVE  393 (405)
Q Consensus       314 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l  393 (405)
                      +++++|+++|++                      ++.+|..|.||||+|+..|+.+++++|++. |+|++.+|..|.||+
T Consensus       231 ~iv~~Ll~~g~d----------------------in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpl  287 (480)
T PHA03100        231 EVVNYLLSYGVP----------------------INIKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPL  287 (480)
T ss_pred             HHHHHHHHcCCC----------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHH
Confidence            999999999887                      456677899999999999999999999997 999999999999999


Q ss_pred             hhhhcccccC
Q 040751          394 HILDYEHILD  403 (405)
Q Consensus       394 ~~a~~~~~~~  403 (405)
                      ++|++.+..+
T Consensus       288 ~~A~~~~~~~  297 (480)
T PHA03100        288 HIAILNNNKE  297 (480)
T ss_pred             HHHHHhCCHH
Confidence            9999877653

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-39  Score=308.71  Aligned_cols=320  Identities=15%  Similarity=0.130  Sum_probs=236.0

Q ss_pred             CchhhhhHHHHHHHhhhhccccchhhHhhhhhh---hhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHH---
Q 040751           43 VEPFKDMAREKIESLLTAKTRNTILHINIISKE---RENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSG---  116 (405)
Q Consensus        43 ~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~---  116 (405)
                      ++.|++|+..|......+.+|+||||+|  +..   |+.+++++|++    .+.+++..+..|.||||.|+..|+.+   
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a--~~~~~~~~~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~   85 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAY--LFNEHCNNVEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVNK   85 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHH--HHhhhcCcHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHHH
Confidence            5678999988776677788999999997  554   77899999876    57788899999999999999999854   


Q ss_pred             -HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH
Q 040751          117 -IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA  195 (405)
Q Consensus       117 -~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~  195 (405)
                       +++.|++.+...+                  ..+  ..++++.|+..++.+++++|+++|++++ .++..|.||||+++
T Consensus        86 ~~~~~Ll~~~~~~n------------------~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~  144 (661)
T PHA02917         86 DIAMALLEATGYSN------------------IND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYV  144 (661)
T ss_pred             HHHHHHHhccCCCC------------------CCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHH
Confidence             5678887654322                  212  2367788999999999999999999998 78999999999654


Q ss_pred             --HcCCHHHHHHHHHcCCCCcccCC---CC-----------CcHHHHHHh-----------cCCccHHHHHHHHHhhhhh
Q 040751          196 --ESRSSDMVLALLENSTSVSHEGP---NG-----------KTALHAAAM-----------KFDLVDTALRKLLEKKENL  248 (405)
Q Consensus       196 --~~~~~~~v~~Ll~~g~~~~~~~~---~~-----------~t~L~~a~~-----------~~~~~~~~v~~Ll~~~~~~  248 (405)
                        ..|+.+++++|+++|++++..+.   .|           .||||+|+.           .++.  +++++|+..+.+ 
T Consensus       145 a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~--eiv~~Li~~Gad-  221 (661)
T PHA02917        145 MTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRP--EVVKCLINHGIK-  221 (661)
T ss_pred             HccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcH--HHHHHHHHCCCC-
Confidence              46899999999999999986543   23           599999986           3466  999999998876 


Q ss_pred             hhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccc--ccccCCccHHHHHHhc---------CCHH---
Q 040751          249 IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI--ADKDRKMTALHLAAGQ---------GNAE---  314 (405)
Q Consensus       249 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~--~~~~~g~t~l~~A~~~---------~~~~---  314 (405)
                      ++.++..|.||||+|+..|+.       +.++++.|++ |.+....  ..+..+.+|+++|+..         .+.+   
T Consensus       222 vn~~d~~G~TpLh~A~~~g~~-------~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~  293 (661)
T PHA02917        222 PSSIDKNYCTALQYYIKSSHI-------DIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVK  293 (661)
T ss_pred             cccCCCCCCcHHHHHHHcCCC-------cHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHH
Confidence            899999999999999999853       2357777764 5443211  0112344445555421         1334   


Q ss_pred             ------------------------------------------------------HHHHHHhcCCcccccccCCCChHHH-
Q 040751          315 ------------------------------------------------------IVDAIISKNPECYELVDNRGWNFLH-  339 (405)
Q Consensus       315 ------------------------------------------------------~v~~Ll~~~~~~~~~~~~~g~t~l~-  339 (405)
                                                                            ++++|++.|+++ +.++..|.++.. 
T Consensus       294 ~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdv-n~~~~~g~~~~~~  372 (661)
T PHA02917        294 LFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVV-NKEAIHGYFRNIN  372 (661)
T ss_pred             HHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCC-CCCCccccchhhc
Confidence                                                                  445555555544 334444444321 


Q ss_pred             -------HHHH-hccccccccCCCCCHHHHHHHhCC-----------------------cHHHHHHHhccccccccccCC
Q 040751          340 -------YAVV-TRSLINEGDAMGNTPLHVLAAVRR-----------------------NEFYDVMIRNTQVNYDAVNKQ  388 (405)
Q Consensus       340 -------~a~~-~~~~~~~~~~~g~t~L~~a~~~~~-----------------------~~~v~~Ll~~~g~d~~~~~~~  388 (405)
                             ..+. .|..++.++..|.||||.|++.++                       .+++++|+.+ |+|++.+|..
T Consensus       373 ~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-GAdIN~kd~~  451 (661)
T PHA02917        373 IDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPY-LKDINMIDKR  451 (661)
T ss_pred             CCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHC-CCCCCCCCCC
Confidence                   1111 233455666679999999975432                       5678999998 9999999999


Q ss_pred             CCchhhhhhccccc
Q 040751          389 NVSVEHILDYEHIL  402 (405)
Q Consensus       389 g~t~l~~a~~~~~~  402 (405)
                      |+||||+|+..+..
T Consensus       452 G~TpLh~Aa~~~~~  465 (661)
T PHA02917        452 GETLLHKAVRYNKQ  465 (661)
T ss_pred             CcCHHHHHHHcCCH
Confidence            99999999877654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-39  Score=302.25  Aligned_cols=296  Identities=18%  Similarity=0.194  Sum_probs=218.7

Q ss_pred             HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK  111 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  111 (405)
                      .|||.|+..|+.++|+.|++.|++.+..+..|+||||+|  +..|+.+++++|++.....      ....+.+|++.|+.
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A--~~~g~~~~v~~Ll~~~~~~------~~~~~~~~l~~a~~  110 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHII--CKEPNKLGMKEMIRSINKC------SVFYTLVAIKDAFN  110 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHCccHhHHHHHHHHHhcc------ccccchhhHHHHHH
Confidence            579999999999999999999988888888899999999  8888888888887742211      11456789999999


Q ss_pred             hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC--CCHHHHHHHHhcCCCCccccCCC-CC
Q 040751          112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH--KNVDVVKILTKEDPDYRYSANND-GK  188 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~-g~  188 (405)
                      .++.+++++|+..+......                    .....+......  ...+++++|+++|++++ ..+.. |.
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin-~~~~~~g~  169 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQT--------------------IDLVYIDKKSKDDIIEAEITKLLLSYGADIN-MKDRHKGN  169 (477)
T ss_pred             cCCHHHHHHHHhCcccCccc--------------------CcHHHHhhccchhhHHHHHHHHHHHcCCCCC-ccCCCCCC
Confidence            99999999998875432100                    000011111111  22458999999999988 56666 99


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcCh
Q 040751          189 TPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGM  268 (405)
Q Consensus       189 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~  268 (405)
                      ||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.  ++++.|++.+.+ ++.++..|.||||+|+..+ 
T Consensus       170 tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~--~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~-  245 (477)
T PHA02878        170 TALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK--PIVHILLENGAS-TDARDKCGNTPLHISVGYC-  245 (477)
T ss_pred             CHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCH--HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhc-
Confidence            999999999999999999999999999999999999999999988  999999887766 7888889999999998653 


Q ss_pred             hhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcccc
Q 040751          269 YWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLI  348 (405)
Q Consensus       269 ~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~  348 (405)
                             ++.+++++|+++|+++ +......|.||||+|  .++.+++++|+++|+++ +                    
T Consensus       246 -------~~~~iv~~Ll~~gadv-n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadi-n--------------------  294 (477)
T PHA02878        246 -------KDYDILKLLLEHGVDV-NAKSYILGLTALHSS--IKSERKLKLLLEYGADI-N--------------------  294 (477)
T ss_pred             -------CCHHHHHHHHHcCCCC-CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCC-C--------------------
Confidence                   1457889999998887 333334788999999  46788999999998875 4                    


Q ss_pred             ccccCCCCCHHHHHHHhC-CcHHHHHHHhc----cccccccccCCCCch
Q 040751          349 NEGDAMGNTPLHVLAAVR-RNEFYDVMIRN----TQVNYDAVNKQNVSV  392 (405)
Q Consensus       349 ~~~~~~g~t~L~~a~~~~-~~~~v~~Ll~~----~g~d~~~~~~~g~t~  392 (405)
                       .+|..|.||||+|+..+ ..++++.|+.+    .+++++.++..|.++
T Consensus       295 -~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~  342 (477)
T PHA02878        295 -SLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFID  342 (477)
T ss_pred             -CcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHH
Confidence             44445555555555432 34555555543    245666666666544

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-38  Score=298.30  Aligned_cols=299  Identities=18%  Similarity=0.196  Sum_probs=243.0

Q ss_pred             HHHHHhhcCCCchhhhhHHHHHH----HhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHH
Q 040751           33 KFFKAAADGNVEPFKDMAREKIE----SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHV  108 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  108 (405)
                      .|+.++..++.+.+...++.-..    .......+.||||+|  +..|+.+++++|++    .+.+++..+..|.||||+
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A--~~~g~~e~vk~Ll~----~gadvn~~d~~g~TpLh~   76 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQA--VEARNLDVVKSLLT----RGHNVNQPDHRDLTPLHI   76 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence            37788888887666666655211    112234588999999  99999999999987    477889999999999999


Q ss_pred             HHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCC
Q 040751          109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK  188 (405)
Q Consensus       109 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  188 (405)
                      ||..|+.+++++|++.+....                    ...+.++++.|+..++.+++++|+..+.......+   .
T Consensus        77 A~~~g~~~~v~~Ll~~~~~~~--------------------~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~  133 (477)
T PHA02878         77 ICKEPNKLGMKEMIRSINKCS--------------------VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---L  133 (477)
T ss_pred             HHHCccHhHHHHHHHHHhccc--------------------cccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---H
Confidence            999999999999999876532                    24678999999999999999999987655331111   1


Q ss_pred             cHHHHHHHcC--CHHHHHHHHHcCCCCcccCCC-CCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH
Q 040751          189 TPLYMAAESR--SSDMVLALLENSTSVSHEGPN-GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY  265 (405)
Q Consensus       189 t~L~~a~~~~--~~~~v~~Ll~~g~~~~~~~~~-~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  265 (405)
                      ..+......+  ..+++++|+++|++++..+.. |.||||+|+..++.  ++++.|++.+.+ ++..+..|.||||.|+.
T Consensus       134 ~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~--~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~  210 (477)
T PHA02878        134 VYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQ--RLTELLLSYGAN-VNIPDKTNNSPLHHAVK  210 (477)
T ss_pred             HHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCH--HHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            1111111122  356999999999999999998 99999999999999  999999998876 78889999999999999


Q ss_pred             cChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhc-CCHHHHHHHHhcCCcccccccCCCChHHHHHHHh
Q 040751          266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ-GNAEIVDAIISKNPECYELVDNRGWNFLHYAVVT  344 (405)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  344 (405)
                      .+         +.++++.|++.|+++ +..+ ..|.||||+|+.. ++.+++++|+++|+++                  
T Consensus       211 ~~---------~~~iv~~Ll~~ga~i-n~~d-~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv------------------  261 (477)
T PHA02878        211 HY---------NKPIVHILLENGAST-DARD-KCGNTPLHISVGYCKDYDILKLLLEHGVDV------------------  261 (477)
T ss_pred             hC---------CHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHhcCCHHHHHHHHHcCCCC------------------
Confidence            88         557999999999887 4434 4899999999975 7899999999999885                  


Q ss_pred             cccccccc-CCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751          345 RSLINEGD-AMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       345 ~~~~~~~~-~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                          +.++ ..|.||||+|  .++.+++++|++. |+|++.+|..|.||+++|++.
T Consensus       262 ----n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~-gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        262 ----NAKSYILGLTALHSS--IKSERKLKLLLEY-GADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             ----CccCCCCCCCHHHHH--ccCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHH
Confidence                3333 3688899998  4678999999998 999999999999999999874

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.2e-39  Score=313.68  Aligned_cols=350  Identities=25%  Similarity=0.317  Sum_probs=229.9

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      .+|+|.|+..+.++.+..++.+|+++...+..|.+|||.|  +..|+.++++++++    .+..++..+..|.||+|.|+
T Consensus       210 ~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a--~~~g~~~i~~~l~~----~ga~~~~~~vr~~tplh~AA  283 (1143)
T KOG4177|consen  210 FTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVA--AFMGHLDIVKLLLQ----HGASVNVSTVRGETPLHMAA  283 (1143)
T ss_pred             CCchhhhccccccceeeeeeeccCcCCcccccCccHHHHH--HhccchhHHHHHHh----cccccCcccccccCcchhhh
Confidence            3556666666666666666666666666666666666666  66666666666655    35555666666666666666


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHH---------------HHHhhhc--------------------------
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAA---------------RQMIKMT--------------------------  149 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--------------------------  149 (405)
                      ..+..++.++|+++|+++........+....+               ....+..                          
T Consensus       284 ~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~  363 (1143)
T KOG4177|consen  284 RAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEH  363 (1143)
T ss_pred             ccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhcc
Confidence            66666666666666665543322211111100               0001222                          


Q ss_pred             -------cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751          150 -------NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT  222 (405)
Q Consensus       150 -------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  222 (405)
                             +..|.||+|.|+.+|..+++++++.+|.+++ .....|.||||.|..+++..+++.++++|++++..+..|.|
T Consensus       364 ~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T  442 (1143)
T KOG4177|consen  364 GAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYT  442 (1143)
T ss_pred             ccccCcccccCCcchhhhcccCchhHHHhhhhccCCcc-cCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCC
Confidence                   3345555555555555555555555555544 45555555555555555555555555555555555556666


Q ss_pred             HHHHHHhcC-CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCc
Q 040751          223 ALHAAAMKF-DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKM  301 (405)
Q Consensus       223 ~L~~a~~~~-~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~  301 (405)
                      |+|.|+..+ ..  +....++..+ ..++.....|.||||.|+..|         +.+++..+++.+... +. ....+.
T Consensus       443 ~lhvaa~~g~~~--~~~~~l~~~g-~~~n~~s~~G~T~Lhlaaq~G---------h~~~~~llle~~~~~-~~-~~~~~l  508 (1143)
T KOG4177|consen  443 PLHVAAKKGRYL--QIARLLLQYG-ADPNAVSKQGFTPLHLAAQEG---------HTEVVQLLLEGGAND-NL-DAKKGL  508 (1143)
T ss_pred             hhhhhhhcccHh--hhhhhHhhcC-CCcchhccccCcchhhhhccC---------CchHHHHhhhcCCcc-Cc-cchhcc
Confidence            666666665 22  3333333333 235555566666666666665         556777777766433 22 223778


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc------------ccccccCCCCCHHHHHHHhCCcH
Q 040751          302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRRNE  369 (405)
Q Consensus       302 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~  369 (405)
                      +++|.|...+...+++.++++|+++ +.++..|+||||.|+.+|+            +++.+++.|+||||.|+..|+.+
T Consensus       509 ~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  509 TPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             chhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH
Confidence            8888888888888888888888887 7788999999999998888            78888999999999999999999


Q ss_pred             HHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          370 FYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       370 ~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      ++++|+++ |+++|+.|.+|.|||++|.+.++++
T Consensus       588 i~~LLlk~-GA~vna~d~~g~TpL~iA~~lg~~~  620 (1143)
T KOG4177|consen  588 IAELLLKH-GASVNAADLDGFTPLHIAVRLGYLS  620 (1143)
T ss_pred             HHHHHHHc-CCCCCcccccCcchhHHHHHhcccc
Confidence            99999997 9999999999999999999988765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.9e-40  Score=317.81  Aligned_cols=339  Identities=26%  Similarity=0.327  Sum_probs=267.3

Q ss_pred             HHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHh
Q 040751           33 KFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKF  112 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~  112 (405)
                      +++.|+..+..++++.++....+....+.+|.||+|.|  +..+.+++++.++.    .+.++...|..|.||||.|++.
T Consensus       179 ~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~tpl~~a--~~~nri~~~eLll~----~gadv~a~d~~gl~~lh~a~~~  252 (1143)
T KOG4177|consen  179 RLHVAAHCGHARVAKLLLDKKADPNASALNGFTPLHIA--CKKNRIKVVELLLK----HGADVSAKDESGLTPLHVAAFM  252 (1143)
T ss_pred             hhhHHhhcchHHHHhhhhcccCCccccccCCCCchhhh--ccccccceeeeeee----ccCcCCcccccCccHHHHHHhc
Confidence            67999999999999999999999999999999999999  99999999999877    5899999999999999999999


Q ss_pred             CcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040751          113 GHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY  192 (405)
Q Consensus       113 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  192 (405)
                      |+.+++++|+.+|+.++                  ..+.+|.||+|.|+..+..++.++|+++|+++. ......+||+|
T Consensus       253 g~~~i~~~l~~~ga~~~------------------~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~-~~~~~~kt~l~  313 (1143)
T KOG4177|consen  253 GHLDIVKLLLQHGASVN------------------VSTVRGETPLHMAARAGQVEVCKLLLQNGADVL-AKARDDQTPLH  313 (1143)
T ss_pred             cchhHHHHHHhcccccC------------------cccccccCcchhhhccchhhhHhhhhccCcccc-cccccccChhh
Confidence            99999999999999865                  788899999999999999999999999999987 67778888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhh
Q 040751          193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN  272 (405)
Q Consensus       193 ~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  272 (405)
                      .|...|..++++.+++.++.++..+..+.+|+|.++..+..  ++...+...... ....+..+.||+|.|+..|..++.
T Consensus       314 ~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~--~~~~~l~~~~~~-~~~a~~k~~~pl~la~~~g~~~~v  390 (1143)
T KOG4177|consen  314 IASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQV--EVAGALLEHGAQ-RRQAEEKGFTPLHLAVKSGRVSVV  390 (1143)
T ss_pred             hhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhH--HHHHHhhccccc-cCcccccCCcchhhhcccCchhHH
Confidence            88888888888888888887777777777777766666665  444444333332 333445555555555555533222


Q ss_pred             hhc------------------------cccchhHHHHhhcccccccccccCCccHHHHHHhcC-CHHHHHHHHhcCCccc
Q 040751          273 RFY------------------------GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG-NAEIVDAIISKNPECY  327 (405)
Q Consensus       273 ~~l------------------------~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~-~~~~v~~Ll~~~~~~~  327 (405)
                      ..+                        .+..+++.+++++++. +.... .|+||+|+|+..| ..++...+++.|.+. 
T Consensus       391 ~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~-lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-  467 (1143)
T KOG4177|consen  391 ELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAK-LGYTPLHVAAKKGRYLQIARLLLQYGADP-  467 (1143)
T ss_pred             HhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhh-cCCChhhhhhhcccHhhhhhhHhhcCCCc-
Confidence            211                        2455566666655555 22222 5567777776666 666666666666665 


Q ss_pred             ccccCCCChHHHHHHHhcc---------------------------------------------ccccccCCCCCHHHHH
Q 040751          328 ELVDNRGWNFLHYAVVTRS---------------------------------------------LINEGDAMGNTPLHVL  362 (405)
Q Consensus       328 ~~~~~~g~t~l~~a~~~~~---------------------------------------------~~~~~~~~g~t~L~~a  362 (405)
                      +..-..|.||||.|...|+                                             .++.++..|.||||.|
T Consensus       468 n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A  547 (1143)
T KOG4177|consen  468 NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVA  547 (1143)
T ss_pred             chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHH
Confidence            6666667777777766666                                             5777889999999999


Q ss_pred             HHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          363 AAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       363 ~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      +.+|+..+|++||++ |+|++.+++.|+||||.|+..|+.+
T Consensus       548 ~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~  587 (1143)
T KOG4177|consen  548 VHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHND  587 (1143)
T ss_pred             HhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHH
Confidence            999999999999998 9999999999999999999988654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-38  Score=297.54  Aligned_cols=285  Identities=14%  Similarity=0.132  Sum_probs=234.0

Q ss_pred             hhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhC----
Q 040751           38 AADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFG----  113 (405)
Q Consensus        38 ~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g----  113 (405)
                      ....+.++|+.|++.|++++.. ..|.||||.++....++.+++++|++    .+.+++..+ .+.||||.|+..+    
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~----~GAdvn~~~-~~~tpL~~a~~~~~~~~   84 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLID----NGADVNYKG-YIETPLCAVLRNREITS   84 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHH----cCCCccCCC-CCCCcHHHHHhccCcch
Confidence            4468899999999999998876 45999998763233346889999988    477888766 5799999998754    


Q ss_pred             --cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcCCCCccccCCCCC
Q 040751          114 --HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKEDPDYRYSANNDGK  188 (405)
Q Consensus       114 --~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~  188 (405)
                        +.++|++|+++|++++                  .++..|.||||.|+..   ++.+++++|+++|++++...+..|.
T Consensus        85 ~~~~~iv~~Ll~~Gadin------------------~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~  146 (494)
T PHA02989         85 NKIKKIVKLLLKFGADIN------------------LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGY  146 (494)
T ss_pred             hhHHHHHHHHHHCCCCCC------------------CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCC
Confidence              5789999999999954                  8889999999988754   6799999999999999447889999


Q ss_pred             cHHHHHHHc--CCHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHhcC----CccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751          189 TPLYMAAES--RSSDMVLALLENSTSVSH-EGPNGKTALHAAAMKF----DLVDTALRKLLEKKENLIKETDQYGWTPIH  261 (405)
Q Consensus       189 t~L~~a~~~--~~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~a~~~~----~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  261 (405)
                      ||||+|+..  ++.+++++|+++|++++. .+..|.||||.|+..+    +.  +++++|++.+.+ ++..+..+.|+++
T Consensus       147 tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~--~iv~~Ll~~Ga~-vn~~~~~~~t~l~  223 (494)
T PHA02989        147 NLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISI--KVIKYLIKKGVN-IETNNNGSESVLE  223 (494)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccH--HHHHHHHhCCCC-ccccCCccccHHH
Confidence            999999865  589999999999999988 6788999999998764    66  999999998876 7778888999999


Q ss_pred             HHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHH
Q 040751          262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA  341 (405)
Q Consensus       262 ~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  341 (405)
                      .++..+...   .....+++++|+. +.++ +..+ ..|.||||+|+..++.+++++|++.|++                
T Consensus       224 ~~~~~~~~~---~~~~~~il~~l~~-~adv-n~~d-~~G~TpL~~Aa~~~~~~~v~~LL~~Gad----------------  281 (494)
T PHA02989        224 SFLDNNKIL---SKKEFKVLNFILK-YIKI-NKKD-KKGFNPLLISAKVDNYEAFNYLLKLGDD----------------  281 (494)
T ss_pred             HHHHhchhh---cccchHHHHHHHh-CCCC-CCCC-CCCCCHHHHHHHhcCHHHHHHHHHcCCC----------------
Confidence            887654210   1123456676654 5555 4444 4899999999999999999999999987                


Q ss_pred             HHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          342 VVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       342 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                            ++.+|..|.||||+|++.|+.++++.||+.
T Consensus       282 ------in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        282 ------IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             ------ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  456677888999999999999999999986

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.8e-38  Score=291.06  Aligned_cols=331  Identities=17%  Similarity=0.151  Sum_probs=246.9

Q ss_pred             chhhhhHHHHHHHh-hhhccccchhhHhhhhhhh---hcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhC--cHHH
Q 040751           44 EPFKDMAREKIESL-LTAKTRNTILHINIISKER---ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFG--HSGI  117 (405)
Q Consensus        44 ~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~  117 (405)
                      ..++..++...+.+ ..+..|.||||+|  +..+   +.+++++|++    .+++++.+|..|.||||+|+..+  +.++
T Consensus        21 ~~~~~~~~~~~~in~~kd~~G~TaLh~A--~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~Aa~~~~~~~eI   94 (672)
T PHA02730         21 KKIKLEIETCHNLSKHIDRRGNNALHCY--VSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGVYSKRKYVKSQI   94 (672)
T ss_pred             HHHHHHHHHhcchhhhcCCCCCcHHHHH--HHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHHHHHcCCCcHHH
Confidence            34666677665666 6777899999999  7776   5899999987    68899999999999999999977  7999


Q ss_pred             HHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHh--CCCHHHHHHHHh-cCCCCccccC----CCCCcH
Q 040751          118 VTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVC--HKNVDVVKILTK-EDPDYRYSAN----NDGKTP  190 (405)
Q Consensus       118 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~-~~~~~~~~~~----~~g~t~  190 (405)
                      |++|++.|+..+                .+..+..+.+||+.++.  .++.+++++|++ .+.+++...+    ..|.+|
T Consensus        95 v~~Ll~~~~~~~----------------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~  158 (672)
T PHA02730         95 VHLLISSYSNAS----------------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVD  158 (672)
T ss_pred             HHHHHhcCCCCC----------------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhh
Confidence            999999987653                34567678889988888  888999999997 5667652222    378999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc-------ccCCCCC-cHHHHHHh------cCCccHHHHHHHHHhhhhhhhhcccCC
Q 040751          191 LYMAAESRSSDMVLALLENSTSVS-------HEGPNGK-TALHAAAM------KFDLVDTALRKLLEKKENLIKETDQYG  256 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g~~~~-------~~~~~~~-t~L~~a~~------~~~~~~~~v~~Ll~~~~~~~~~~~~~~  256 (405)
                      ++++...+++++|++|+++|++++       ..+.... |.||+++.      +...  ++++.|+..+++ ++.++..|
T Consensus       159 ~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~--eiv~lLIs~Gad-IN~kd~~G  235 (672)
T PHA02730        159 IYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSK--DVIKCLIDNNVS-IHGRDEGG  235 (672)
T ss_pred             hhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCH--HHHHHHHHCCCC-CCCCCCCC
Confidence            999999999999999999999995       1233344 44553433      3455  999999999876 89999999


Q ss_pred             CCHHHH--HHHcChhhhhhhccc------------------------------------cchhHHHHhhcccccc--c--
Q 040751          257 WTPIHY--AAYHGMYWINRFYGN------------------------------------YGTVNLLLETDQSASN--I--  294 (405)
Q Consensus       257 ~t~l~~--a~~~~~~~~~~~l~~------------------------------------~~~~~~Ll~~~~~~~~--~--  294 (405)
                      .||||+  +...++.+++++|..                                    .++++.|++.+.....  .  
T Consensus       236 ~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  315 (672)
T PHA02730        236 SLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSI  315 (672)
T ss_pred             CCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhcc
Confidence            999996  444444555554422                                    1234444443222100  0  


Q ss_pred             -ccccCCcc---------------------HHHHHHhcC---CHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc---
Q 040751          295 -ADKDRKMT---------------------ALHLAAGQG---NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS---  346 (405)
Q Consensus       295 -~~~~~g~t---------------------~l~~A~~~~---~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~---  346 (405)
                       ..+..|.+                     .||.-...+   +.+++++|+++|+++ +. +..|+||||+|+..+.   
T Consensus       316 ~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdI-N~-k~~G~TpLH~Aa~~nnn~i  393 (672)
T PHA02730        316 TSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATM-DK-TTDNNYPLHDYFVNNNNIV  393 (672)
T ss_pred             ccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCC-Cc-CCCCCcHHHHHHHHcCCcc
Confidence             01223433                     566666644   689999999999998 44 4799999998876552   


Q ss_pred             ---------------ccccccCCCCCHHHH---HHHhC---------CcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751          347 ---------------LINEGDAMGNTPLHV---LAAVR---------RNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       347 ---------------~~~~~~~~g~t~L~~---a~~~~---------~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                                     ++|.+|..|.||||.   |...+         ..+++++|+++ |+|+|++|..|+|||++|+..
T Consensus       394 ~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~-GADINakD~~G~TPLh~Aa~~  472 (672)
T PHA02730        394 DVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKY-MDDIDMIDNENKTLLYYAVDV  472 (672)
T ss_pred             hHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhc-ccchhccCCCCCCHHHHHHHh
Confidence                           377888999999984   33222         23569999998 999999999999999999987


Q ss_pred             ccc
Q 040751          400 HIL  402 (405)
Q Consensus       400 ~~~  402 (405)
                      +..
T Consensus       473 ~~~  475 (672)
T PHA02730        473 NNI  475 (672)
T ss_pred             CCH
Confidence            654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=265.81  Aligned_cols=224  Identities=17%  Similarity=0.204  Sum_probs=195.3

Q ss_pred             hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHH
Q 040751          112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL  191 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  191 (405)
                      .++.+++++|+++|+.                    ..|..|.||||+|+..|+.+++++|++.|++++ ..  .+.|||
T Consensus         9 ~~~~~~~~~Lis~~a~--------------------~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~~--d~~TpL   65 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--------------------KADVHGHSALYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPL   65 (284)
T ss_pred             cCHHHHHHHHHhCCCC--------------------CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-CC--CCCCHH
Confidence            4678999999999875                    468899999999999999999999999999887 33  478999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCC-CCHHHHHHHcChhh
Q 040751          192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYG-WTPIHYAAYHGMYW  270 (405)
Q Consensus       192 ~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~~~~  270 (405)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.  ++++.|+..+.+ ++.++..| .||||+|+..|   
T Consensus        66 h~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~--eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g---  139 (284)
T PHA02791         66 HQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNM--QTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLN---  139 (284)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcC---
Confidence            999999999999999999999999999999999999999999  999999998866 66677777 48999999998   


Q ss_pred             hhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcccccc
Q 040751          271 INRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINE  350 (405)
Q Consensus       271 ~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  350 (405)
                            +.+++++|++++....   +...|.||||+|+..|+.+++++|+++|+++                      +.
T Consensus       140 ------~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~----------------------n~  188 (284)
T PHA02791        140 ------DVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTST----------------------NT  188 (284)
T ss_pred             ------CHHHHHHHHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCCC----------------------Cc
Confidence                  5578999998865431   1125799999999999999999999999874                      45


Q ss_pred             ccCCCCCH-HHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhh
Q 040751          351 GDAMGNTP-LHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILD  397 (405)
Q Consensus       351 ~~~~g~t~-L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~  397 (405)
                      +|..|.|| ||+|+..|+.+++++|+++ |+|++.+|..| ++++.|.
T Consensus       189 ~d~~g~t~~L~~Aa~~~~~e~v~lLl~~-Ga~in~~~~~~-~~l~~~e  234 (284)
T PHA02791        189 NNSLLFIPDIKLAIDNKDLEMLQALFKY-DINIYSVNLEN-VLLDDAE  234 (284)
T ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCccCcccC-ccCCCHH
Confidence            56677766 9999999999999999997 99999999954 7777664

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-37  Score=291.46  Aligned_cols=258  Identities=18%  Similarity=0.169  Sum_probs=220.0

Q ss_pred             hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC--CCHHHHHHHHhcCCCCccccCCCCCc
Q 040751          112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH--KNVDVVKILTKEDPDYRYSANNDGKT  189 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~--~~~~~~~~Ll~~~~~~~~~~~~~g~t  189 (405)
                      ..+.++|++|+++|++++                  .. ..|.|||+.++..  ++.+++++|+++|++++ ..+ .+.|
T Consensus        13 ~~~~~~v~~LL~~GadvN------------------~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn-~~~-~~~t   71 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVN------------------EE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVN-YKG-YIET   71 (494)
T ss_pred             cCcHHHHHHHHHcCCCcc------------------cc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCcc-CCC-CCCC
Confidence            467999999999999865                  55 5688998765544  36899999999999998 444 5799


Q ss_pred             HHHHHHHcC------CHHHHHHHHHcCCCCcccCCCCCcHHHHHHhc---CCccHHHHHHHHHhhhhhh-hhcccCCCCH
Q 040751          190 PLYMAAESR------SSDMVLALLENSTSVSHEGPNGKTALHAAAMK---FDLVDTALRKLLEKKENLI-KETDQYGWTP  259 (405)
Q Consensus       190 ~L~~a~~~~------~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~---~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~  259 (405)
                      |||.|+..+      ..+++++|+++|++++.++..|.||||.|+..   ++.  +++++|++.+.+ + +.++..|.||
T Consensus        72 pL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~--eiv~~Ll~~Gad-in~~~d~~g~tp  148 (494)
T PHA02989         72 PLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNC--DMLRFLLSKGIN-VNDVKNSRGYNL  148 (494)
T ss_pred             cHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcH--HHHHHHHHCCCC-cccccCCCCCCH
Confidence            999998754      47899999999999999999999999998765   456  999999998876 6 7788999999


Q ss_pred             HHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcC----CHHHHHHHHhcCCcccccccCCCC
Q 040751          260 IHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG----NAEIVDAIISKNPECYELVDNRGW  335 (405)
Q Consensus       260 l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~----~~~~v~~Ll~~~~~~~~~~~~~g~  335 (405)
                      ||+|+..+.       ++.+++++|+++|+++.. ..+..|.||||+|+..+    +.+++++|+++|+++ +..+..|.
T Consensus       149 Lh~a~~~~~-------~~~~iv~~Ll~~Gadi~~-~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v-n~~~~~~~  219 (494)
T PHA02989        149 LHMYLESFS-------VKKDVIKILLSFGVNLFE-KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI-ETNNNGSE  219 (494)
T ss_pred             HHHHHHhcc-------CCHHHHHHHHHcCCCccc-cccccCCChHHHHHhcccccccHHHHHHHHhCCCCc-cccCCccc
Confidence            999986531       255799999999998743 23458999999998764    899999999999998 77888999


Q ss_pred             hHHHHHHHhc-----------------cccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhc
Q 040751          336 NFLHYAVVTR-----------------SLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDY  398 (405)
Q Consensus       336 t~l~~a~~~~-----------------~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~  398 (405)
                      +++|.++..+                 .++|.+|..|+||||+|+..|+.+++++|++. |+|++.+|..|+|||++|++
T Consensus       220 t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~-Gadin~~d~~G~TpL~~A~~  298 (494)
T PHA02989        220 SVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL-GDDIYNVSKDGDTVLTYAIK  298 (494)
T ss_pred             cHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc-CCCccccCCCCCCHHHHHHH
Confidence            9999876543                 26799999999999999999999999999998 99999999999999999999


Q ss_pred             ccccC
Q 040751          399 EHILD  403 (405)
Q Consensus       399 ~~~~~  403 (405)
                      .+..+
T Consensus       299 ~~~~~  303 (494)
T PHA02989        299 HGNID  303 (494)
T ss_pred             cCCHH
Confidence            87654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=259.66  Aligned_cols=232  Identities=19%  Similarity=0.241  Sum_probs=195.9

Q ss_pred             hhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCc
Q 040751           75 ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN  154 (405)
Q Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  154 (405)
                      .+..+++++|++    .+.  +..|..|.||||+|+..|+.+++++|+++|++++                  ..  +|.
T Consensus         9 ~~~~~~~~~Lis----~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n------------------~~--d~~   62 (284)
T PHA02791          9 WKSKQLKSFLSS----KDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN------------------LL--ENE   62 (284)
T ss_pred             cCHHHHHHHHHh----CCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc------------------CC--CCC
Confidence            345566677766    232  4678999999999999999999999999998754                  32  468


Q ss_pred             hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-cHHHHHHhcCCc
Q 040751          155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK-TALHAAAMKFDL  233 (405)
Q Consensus       155 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~a~~~~~~  233 (405)
                      ||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|. ||||+|+..++.
T Consensus        63 TpLh~Aa~~g~~eiV~lLL~~Gadvn-~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         63 FPLHQAATLEDTKIVKILLFSGMDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCH
Confidence            99999999999999999999999988 7889999999999999999999999999999999888875 899999999999


Q ss_pred             cHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH-HHHHHhcCC
Q 040751          234 VDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA-LHLAAGQGN  312 (405)
Q Consensus       234 ~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~-l~~A~~~~~  312 (405)
                        +++++|+..++...+  ...|.||||+|+..|         +.+++++|+++|+++ +..+. .|.|| ||+|+..|+
T Consensus       142 --eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g---------~~eiv~lLL~~gAd~-n~~d~-~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        142 --SIVSYFLSEIPSTFD--LAILLSCIHITIKNG---------HVDMMILLLDYMTST-NTNNS-LLFIPDIKLAIDNKD  206 (284)
T ss_pred             --HHHHHHHhcCCcccc--cccCccHHHHHHHcC---------CHHHHHHHHHCCCCC-CcccC-CCCChHHHHHHHcCC
Confidence              999999987643221  135899999999998         558999999999987 44443 56665 999999999


Q ss_pred             HHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          313 AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       313 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                      .+++++|+++|+++                      |.+|..| ++|      ++.|++++||++
T Consensus       207 ~e~v~lLl~~Ga~i----------------------n~~~~~~-~~l------~~~e~~~~ll~~  242 (284)
T PHA02791        207 LEMLQALFKYDINI----------------------YSVNLEN-VLL------DDAEIAKMIIEK  242 (284)
T ss_pred             HHHHHHHHHCCCCC----------------------ccCcccC-ccC------CCHHHHHHHHHh
Confidence            99999999999985                      3444432 444      889999999988

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-36  Score=278.22  Aligned_cols=241  Identities=17%  Similarity=0.226  Sum_probs=211.8

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751          102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY  181 (405)
Q Consensus       102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  181 (405)
                      .+++||.|+..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++ 
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-   62 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN------------------FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD-   62 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC------------------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-
Confidence            4789999999999999999999999865                  677789999999999999999999999999877 


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751          182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVS-HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI  260 (405)
Q Consensus       182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~-~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  260 (405)
                      ..+..+.||||+|+..|+.+++++|++.|...+ ..+..|.||||+|+..++.  +++++|++.+.+ ++.++..|.|||
T Consensus        63 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~--~iv~~Ll~~gad-~~~~~~~g~tpL  139 (413)
T PHA02875         63 VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL--DIMKLLIARGAD-PDIPNTDKFSPL  139 (413)
T ss_pred             ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH--HHHHHHHhCCCC-CCCCCCCCCCHH
Confidence            567789999999999999999999999998764 4567799999999999999  999999998876 788889999999


Q ss_pred             HHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHH
Q 040751          261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHY  340 (405)
Q Consensus       261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  340 (405)
                      |+|+..|         +.+++++|++++.++ +..+ ..|.||||+|+..|+.+++++|+++|+++ +            
T Consensus       140 h~A~~~~---------~~~~v~~Ll~~g~~~-~~~d-~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~-n------------  195 (413)
T PHA02875        140 HLAVMMG---------DIKGIELLIDHKACL-DIED-CCGCTPLIIAMAKGDIAICKMLLDSGANI-D------------  195 (413)
T ss_pred             HHHHHcC---------CHHHHHHHHhcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCC-C------------
Confidence            9999998         557999999999876 3333 48999999999999999999999999885 2            


Q ss_pred             HHHhccccccccCCC-CCHHHHHHHhCCcHHHHHHHhccccccccc---cCCCCchhhhhhc
Q 040751          341 AVVTRSLINEGDAMG-NTPLHVLAAVRRNEFYDVMIRNTQVNYDAV---NKQNVSVEHILDY  398 (405)
Q Consensus       341 a~~~~~~~~~~~~~g-~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~---~~~g~t~l~~a~~  398 (405)
                               ..+..| .||+|+|+..|+.+++++|+++ |+|++..   +..|.||+++++.
T Consensus       196 ---------~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-gad~n~~~~~~~~~~t~l~~~~~  247 (413)
T PHA02875        196 ---------YFGKNGCVAALCYAIENNKIDIVRLFIKR-GADCNIMFMIEGEECTILDMICN  247 (413)
T ss_pred             ---------cCCCCCCchHHHHHHHcCCHHHHHHHHHC-CcCcchHhhcCCCchHHHHHHHh
Confidence                     333344 5889999999999999999998 9999875   6678899997753

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.4e-36  Score=278.15  Aligned_cols=241  Identities=20%  Similarity=0.252  Sum_probs=116.9

Q ss_pred             cchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHH
Q 040751           64 NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR  143 (405)
Q Consensus        64 ~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  143 (405)
                      +++||.|  +..|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|+++|++++              
T Consensus         3 ~~~L~~A--~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--------------   62 (413)
T PHA02875          3 QVALCDA--ILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD--------------   62 (413)
T ss_pred             chHHHHH--HHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc--------------
Confidence            3444444  44555544444444    233344444445555555555555555555555554432              


Q ss_pred             HHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 040751          144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTA  223 (405)
Q Consensus       144 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  223 (405)
                          ..+..+.||||+|+..|+.+++++|++.|.......+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        63 ----~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tp  138 (413)
T PHA02875         63 ----VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSP  138 (413)
T ss_pred             ----ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCH
Confidence                2333444555555555555555555555544433334445555555555555555555555555555555555555


Q ss_pred             HHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH
Q 040751          224 LHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA  303 (405)
Q Consensus       224 L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  303 (405)
                      ||.|+..++.  +++++|++.+.+ ++.++..|.||||+|+..|         +.+++++|++.|+++. ......+.||
T Consensus       139 Lh~A~~~~~~--~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g---------~~eiv~~Ll~~ga~~n-~~~~~~~~t~  205 (413)
T PHA02875        139 LHLAVMMGDI--KGIELLIDHKAC-LDIEDCCGCTPLIIAMAKG---------DIAICKMLLDSGANID-YFGKNGCVAA  205 (413)
T ss_pred             HHHHHHcCCH--HHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcC---------CHHHHHHHHhCCCCCC-cCCCCCCchH
Confidence            5555555555  555555544433 3444455555555555544         3345555555555442 2222233455


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCcccc--cccCCCChHHHHH
Q 040751          304 LHLAAGQGNAEIVDAIISKNPECYE--LVDNRGWNFLHYA  341 (405)
Q Consensus       304 l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~~a  341 (405)
                      +|+|+..++.+++++|+++|+++..  ..+..+.||++.+
T Consensus       206 l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~  245 (413)
T PHA02875        206 LCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMI  245 (413)
T ss_pred             HHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHH
Confidence            5555555555555555555555411  1233444555443

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.3e-36  Score=280.21  Aligned_cols=289  Identities=14%  Similarity=0.154  Sum_probs=230.1

Q ss_pred             CCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHh-----CcHH
Q 040751           42 NVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKF-----GHSG  116 (405)
Q Consensus        42 ~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~-----g~~~  116 (405)
                      +++.|+.|++.+ +++.. ..+.|+++.++....++.+++++|++    .+.+++..+..|.||||.|+.+     +..+
T Consensus        17 ~~~~v~~ll~~~-~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~   90 (489)
T PHA02798         17 KLSTVKLLIKSC-NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFIN----LGANVNGLDNEYSTPLCTILSNIKDYKHMLD   90 (489)
T ss_pred             cHHHHHHHHhcC-Chhhh-cccchHHHHHHhCCCCCHHHHHHHHH----CCCCCCCCCCCCCChHHHHHHhHHhHHhHHH
Confidence            467899999765 23333 34778887664355667888999987    5888999999999999999864     6799


Q ss_pred             HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCC---CHHHHHHHHhcCCCCccccCCCCCcHHHH
Q 040751          117 IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHK---NVDVVKILTKEDPDYRYSANNDGKTPLYM  193 (405)
Q Consensus       117 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  193 (405)
                      ++++|+++|++++                  ..+..|.||||+|+..+   +.+++++|+++|++++ ..+..|.||||+
T Consensus        91 iv~~Ll~~GadiN------------------~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~  151 (489)
T PHA02798         91 IVKILIENGADIN------------------KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQV  151 (489)
T ss_pred             HHHHHHHCCCCCC------------------CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHH
Confidence            9999999999954                  88999999999999875   7899999999999998 889999999999


Q ss_pred             HHHcCC---HHHHHHHHHcCCCCcccC-CCCCcHHHHHHhcC----CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH
Q 040751          194 AAESRS---SDMVLALLENSTSVSHEG-PNGKTALHAAAMKF----DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY  265 (405)
Q Consensus       194 a~~~~~---~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~~----~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  265 (405)
                      |++.++   .+++++|+++|++++..+ ..+.||||.++..+    +.  +++++|++.+.. ++..+..+.++++....
T Consensus       152 a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~--~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~  228 (489)
T PHA02798        152 YLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDA--DILKLFVDNGFI-INKENKSHKKKFMEYLN  228 (489)
T ss_pred             HHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCH--HHHHHHHHCCCC-cccCCccccchHHHHHH
Confidence            999988   999999999999999874 57899999987653    56  999999998876 67777778888762211


Q ss_pred             cChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhc
Q 040751          266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTR  345 (405)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  345 (405)
                      .-..  .....+.+++.+|+. +.++ +..+ ..|+||||+|+..++.+++++|+++|++                    
T Consensus       229 ~l~~--~~~~~~~~i~~~l~~-~~dv-N~~d-~~G~TPL~~A~~~~~~~~v~~LL~~GAd--------------------  283 (489)
T PHA02798        229 SLLY--DNKRFKKNILDFIFS-YIDI-NQVD-ELGFNPLYYSVSHNNRKIFEYLLQLGGD--------------------  283 (489)
T ss_pred             HHHh--hcccchHHHHHHHHh-cCCC-CCcC-cCCccHHHHHHHcCcHHHHHHHHHcCCc--------------------
Confidence            0000  000013456777665 4554 4333 4899999999999999999999999998                    


Q ss_pred             cccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccccccc
Q 040751          346 SLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVN  386 (405)
Q Consensus       346 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~  386 (405)
                        ++.+|..|.||||+|+..++.++++.|+++ |++++...
T Consensus       284 --in~~d~~G~TpL~~A~~~~~~~iv~~lL~~-~~~~~~i~  321 (489)
T PHA02798        284 --INIITELGNTCLFTAFENESKFIFNSILNK-KPNKNTIS  321 (489)
T ss_pred             --ccccCCCCCcHHHHHHHcCcHHHHHHHHcc-CCCHHHHH
Confidence              456677888999999999999999999987 88887543

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-35  Score=272.23  Aligned_cols=335  Identities=14%  Similarity=0.116  Sum_probs=239.7

Q ss_pred             HHHHHhhcCCCch--hhhhHHHHHHHhhhhccccchhhHhhhhhhhhc-ccHHHHHHHHHhCCcccccccCCCChHHHH-
Q 040751           33 KFFKAAADGNVEP--FKDMAREKIESLLTAKTRNTILHINIISKEREN-VSTEFVEEILEKCPSLLLQVNAKGDTPLHV-  108 (405)
Q Consensus        33 ~l~~A~~~g~~~~--v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~-  108 (405)
                      .|+..++.=+++.  -+.|+++|+++... .+|.||||.-  ..+.+. .-++.++.++..    .+..+.+|.+|+|+ 
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~n~~~~~~~~~~   78 (631)
T PHA02792          6 ILYDSCKTFNIDACSAQSLIESGANPLYE-YDGETPLKAY--VTKKNNNIKNDVVILLLSS----VDYKNINDFDIFEYL   78 (631)
T ss_pred             HHHhHhhccchhHHHHHHHHHcCCCcccc-cCCCccHHHH--HhhhhhhHHHHHHHHHHhC----CCcCccCCccHHHHH
Confidence            3555666665554  35677888888764 5577888866  444442 234455554332    34667778888876 


Q ss_pred             HHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHh-CCCHHHHHHHHhcCCCCc-------
Q 040751          109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVC-HKNVDVVKILTKEDPDYR-------  180 (405)
Q Consensus       109 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~~~~~~-------  180 (405)
                      |+.+|++|+|++|+++|++.+                  ..+..+.+|+++|+. .++.|++++|+++|+++.       
T Consensus        79 ~s~n~~lElvk~LI~~GAdvN------------------~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         79 CSDNIDIELLKLLISKGLEIN------------------SIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             HHhcccHHHHHHHHHcCCCcc------------------cccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            455788888888888888854                  666677888888865 588888888888887521       


Q ss_pred             ----------------------------cccCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751          181 ----------------------------YSANNDGKTPLYMAAESR-------SSDMVLALLENSTSVSHEGPNGKTALH  225 (405)
Q Consensus       181 ----------------------------~~~~~~g~t~L~~a~~~~-------~~~~v~~Ll~~g~~~~~~~~~~~t~L~  225 (405)
                                                  +..+..|.||||+|+..+       ++++++.|+++|++++..|..|.||||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence                                        124456889999999888       789999999999999988888999999


Q ss_pred             HHHhcCCccHHHHHHHHHhhhhh----------h--hhccc-------------CCCCH---HHHHHH-cChhhhhhh--
Q 040751          226 AAAMKFDLVDTALRKLLEKKENL----------I--KETDQ-------------YGWTP---IHYAAY-HGMYWINRF--  274 (405)
Q Consensus       226 ~a~~~~~~~~~~v~~Ll~~~~~~----------~--~~~~~-------------~~~t~---l~~a~~-~~~~~~~~~--  274 (405)
                      +|+.+.++..++++.|+....+.          +  ..+..             .|.+|   +..... +.+..+...  
T Consensus       221 ~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~  300 (631)
T PHA02792        221 YYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILK  300 (631)
T ss_pred             HHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHH
Confidence            99988844448888887642210          0  00000             11111   000000 000000000  


Q ss_pred             -----------------ccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCC--C
Q 040751          275 -----------------YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRG--W  335 (405)
Q Consensus       275 -----------------l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g--~  335 (405)
                                       .-+.+++++|+++|....    ......+++.|+..++.+++++|+++|+++ +.+|..|  .
T Consensus       301 ~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~  375 (631)
T PHA02792        301 RYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINI  375 (631)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCCh
Confidence                             146788999999999863    124556799999999999999999999998 6677765  6


Q ss_pred             hHHHHHHH---------------hccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhc
Q 040751          336 NFLHYAVV---------------TRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDY  398 (405)
Q Consensus       336 t~l~~a~~---------------~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~  398 (405)
                      ||||+|..               .|.++|.+|..|.||||+|+..++.+++++|+++ |++++.+|..|+||+++|..
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~-GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN-GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH
Confidence            89987543               3447899999999999999999999999999998 99999999999999999975

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.1e-36  Score=256.41  Aligned_cols=186  Identities=24%  Similarity=0.280  Sum_probs=151.0

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHH-HHHh---hhhccccc-----hhhHhhhhhhhhcccHHHHHHHHHhCCcccccccC
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREK-IESL---LTAKTRNT-----ILHINIISKERENVSTEFVEEILEKCPSLLLQVNA  100 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~-~~~~---~~~~~g~~-----~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  100 (405)
                      -.+||.+||++|+.++|++|+++- +++.   ....+|.+     ||..|  +..|+.++++.|++.    +..++....
T Consensus        42 g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaA--saAGHl~vVk~L~~~----ga~VN~tT~  115 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAA--SAAGHLEVVKLLLRR----GASVNDTTR  115 (615)
T ss_pred             CCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHH--hccCcHHHHHHHHHh----cCccccccc
Confidence            347888888888888888888854 4443   33344654     66666  888888888888773    577888888


Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      ...|||--||.-|++++||+|+++|+++.                  ..|..|.|.|++|+..|+.+++++|++.|++++
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~------------------IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn  177 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPE------------------IANRHGHTCLMIACYKGHVDIAQYLLEQGADVN  177 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCc------------------ccccCCCeeEEeeeccCchHHHHHHHHhCCCcc
Confidence            88888888888888888888888888854                  788888888888888888889999988888888


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHH
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~  243 (405)
                       .++..|.|+||.|+.+|+.+++++|+.+|+.++... .|.|||..|...|..  ++|..|+.
T Consensus       178 -~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~--~iVe~L~~  236 (615)
T KOG0508|consen  178 -AKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHT--DIVERLLQ  236 (615)
T ss_pred             -hhcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcch--HHHHHHhc
Confidence             788888899999888888899998888888877644 488888888888888  88888874

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-36  Score=226.60  Aligned_cols=205  Identities=20%  Similarity=0.200  Sum_probs=180.7

Q ss_pred             HHHHHhhcCCCchhhhhHHHHHHHh--hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           33 KFFKAAADGNVEPFKDMAREKIESL--LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      +.+.++...-...|..+++..++..  ..|.+|+||||||  +..|+.+++.+|+.   ..+..++.+|..|+||||+|+
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa--~S~g~~eiv~fLls---q~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWA--CSFGHVEIVYFLLS---QPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeee--eecCchhHHHHHHh---cCCCCCCCccccCCchhhhhh
Confidence            4555566666677888888776444  4455899999999  99999999999975   356667888999999999999


Q ss_pred             HhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCc
Q 040751          111 KFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKT  189 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  189 (405)
                      ..|+.++|+.|+.+ |+++                  +..+..|.|+||||+-.|+.|+.++|+++|+.++ .+|..|.|
T Consensus        81 s~g~~evVk~Ll~r~~adv------------------na~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qt  141 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADV------------------NATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQT  141 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCc------------------ceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCc
Confidence            99999999999999 7774                  5899999999999999999999999999999998 89999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH
Q 040751          190 PLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY  265 (405)
Q Consensus       190 ~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  265 (405)
                      |||.|+..|..+++++|+..|+.+|.+|+.|+||||.|..-++.  +....|+..+.+ ....|+.| |++..++-
T Consensus       142 plHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~--d~a~lLV~~gAd-~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  142 PLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHP--DVAVLLVRAGAD-TDREDKEG-TALRIACN  213 (226)
T ss_pred             hhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCc--hHHHHHHHhccc-eeeccccC-chHHHHHH
Confidence            99999999999999999999999999999999999999888888  888888888865 77888888 99877753

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-36  Score=224.05  Aligned_cols=209  Identities=26%  Similarity=0.321  Sum_probs=177.2

Q ss_pred             CchHhHHHHhCCCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCcHHHHHHhc
Q 040751          153 KNTALHEAVCHKNVDVVKILTKEDP-DYRYSANNDGKTPLYMAAESRSSDMVLALL-ENSTSVSHEGPNGKTALHAAAMK  230 (405)
Q Consensus       153 g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~a~~~  230 (405)
                      +.++.+.++...-..-++-|++... +.+...|.+|+|||||||..|+.+++.+|+ +-+..++..|..|+||||.|+..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            3456666666666667777777766 555455669999999999999999999999 45677888888899999999999


Q ss_pred             CCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhc
Q 040751          231 FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ  310 (405)
Q Consensus       231 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~  310 (405)
                      |+.  ++|+.|+.+.+.+++..+..|+|+||+|+.+|         ..+++++|+++++.+ ...+ ..|.||||-|+.-
T Consensus        83 g~~--evVk~Ll~r~~advna~tn~G~T~LHyAagK~---------r~eIaqlLle~ga~i-~~kD-~~~qtplHRAAav  149 (226)
T KOG4412|consen   83 GND--EVVKELLNRSGADVNATTNGGQTCLHYAAGKG---------RLEIAQLLLEKGALI-RIKD-KQGQTPLHRAAAV  149 (226)
T ss_pred             CcH--HHHHHHhcCCCCCcceecCCCcceehhhhcCC---------hhhHHHHHHhcCCCC-cccc-cccCchhHHHHhc
Confidence            988  99999999966778999999999999999998         557999999999766 4444 4899999999999


Q ss_pred             CCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCC
Q 040751          311 GNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNV  390 (405)
Q Consensus       311 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~  390 (405)
                      |+.+++++|+..|+.                      +|..|+.|+||||.|..-|+.+...+|+++ |||++.+|+.| 
T Consensus       150 Gklkvie~Li~~~a~----------------------~n~qDk~G~TpL~~al~e~~~d~a~lLV~~-gAd~~~edke~-  205 (226)
T KOG4412|consen  150 GKLKVIEYLISQGAP----------------------LNTQDKYGFTPLHHALAEGHPDVAVLLVRA-GADTDREDKEG-  205 (226)
T ss_pred             cchhhHHHHHhcCCC----------------------CCcccccCccHHHHHHhccCchHHHHHHHh-ccceeeccccC-
Confidence            999999999999865                      677888899999999888999999999998 99999999999 


Q ss_pred             chhhhhhc
Q 040751          391 SVEHILDY  398 (405)
Q Consensus       391 t~l~~a~~  398 (405)
                      ||+..|+-
T Consensus       206 t~~~~a~~  213 (226)
T KOG4412|consen  206 TALRIACN  213 (226)
T ss_pred             chHHHHHH
Confidence            99887764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-34  Score=272.19  Aligned_cols=257  Identities=15%  Similarity=0.164  Sum_probs=214.3

Q ss_pred             cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH--hCCCHHHHHHHHhcCCCCccccCCCCCcHH
Q 040751          114 HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV--CHKNVDVVKILTKEDPDYRYSANNDGKTPL  191 (405)
Q Consensus       114 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  191 (405)
                      ..+.|+.|++.+...                   .. ..+.|+++.+.  ..++.+++++|+++|++++ ..+..|.|||
T Consensus        17 ~~~~v~~ll~~~~~~-------------------~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpL   75 (489)
T PHA02798         17 KLSTVKLLIKSCNPN-------------------EI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVN-GLDNEYSTPL   75 (489)
T ss_pred             cHHHHHHHHhcCChh-------------------hh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCC-CCCCCCCChH
Confidence            478999999875432                   11 34667766443  3457999999999999998 7889999999


Q ss_pred             HHHHHc-----CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcC---CccHHHHHHHHHhhhhhhhhcccCCCCHHHHH
Q 040751          192 YMAAES-----RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKF---DLVDTALRKLLEKKENLIKETDQYGWTPIHYA  263 (405)
Q Consensus       192 ~~a~~~-----~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~---~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  263 (405)
                      |.|+..     +..+++++|+++|++++..+..|.||||+|+..+   +.  +++++|++.+.+ ++.++..|.||||+|
T Consensus        76 ~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~--~iv~~Ll~~Gad-vn~~d~~g~tpL~~a  152 (489)
T PHA02798         76 CTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNL--EILLFMIENGAD-TTLLDKDGFTMLQVY  152 (489)
T ss_pred             HHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChH--HHHHHHHHcCCC-ccccCCCCCcHHHHH
Confidence            998864     6789999999999999999999999999999876   45  899999998876 789999999999999


Q ss_pred             HHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhc----CCHHHHHHHHhcCCcccccccCCCChHHH
Q 040751          264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ----GNAEIVDAIISKNPECYELVDNRGWNFLH  339 (405)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~----~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~  339 (405)
                      +..+..      .+.+++++|++.|.++ +...+..|.||+|.++..    ++.+++++|+++|+++ +..+..|.++++
T Consensus       153 ~~~~~~------~~~~vv~~Ll~~gadi-n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i-~~~~~~~~~~~~  224 (489)
T PHA02798        153 LQSNHH------IDIEIIKLLLEKGVDI-NTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII-NKENKSHKKKFM  224 (489)
T ss_pred             HHcCCc------chHHHHHHHHHhCCCc-ccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc-ccCCccccchHH
Confidence            998731      1257999999999887 444445789999998764    4899999999999987 667888888876


Q ss_pred             HH-------H-----------HhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccc
Q 040751          340 YA-------V-----------VTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHI  401 (405)
Q Consensus       340 ~a-------~-----------~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~  401 (405)
                      ..       .           ..+.++|.+|..|.||||+|+..|+.+++++||+. |+|++.+|..|+|||++|++.+.
T Consensus       225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQL-GGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHc-CCcccccCCCCCcHHHHHHHcCc
Confidence            21       1           12337899999999999999999999999999997 99999999999999999998876


Q ss_pred             cC
Q 040751          402 LD  403 (405)
Q Consensus       402 ~~  403 (405)
                      .+
T Consensus       304 ~~  305 (489)
T PHA02798        304 KF  305 (489)
T ss_pred             HH
Confidence            43

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.3e-34  Score=245.37  Aligned_cols=198  Identities=26%  Similarity=0.365  Sum_probs=172.7

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP  177 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  177 (405)
                      +.+|.|||-+|+++|+.++|++|+++ ++++...-. .+         .+-....|.+||-.|+..|+.++|+.|+++|+
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~Gs-V~---------FDge~IegappLWaAsaAGHl~vVk~L~~~ga  108 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGS-VR---------FDGETIEGAPPLWAASAAGHLEVVKLLLRRGA  108 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCce-EE---------eCCcccCCCchhhHHhccCcHHHHHHHHHhcC
Confidence            55788999999999999999999994 444321100 00         12345678999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751          178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW  257 (405)
Q Consensus       178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  257 (405)
                      ++| .......|||.-||.-|+.++|++|+++|+|++..|..|.|.|+.||.+|+.  +++++|++.+.+ ++.++..|.
T Consensus       109 ~VN-~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~--~I~qyLle~gAD-vn~ks~kGN  184 (615)
T KOG0508|consen  109 SVN-DTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHV--DIAQYLLEQGAD-VNAKSYKGN  184 (615)
T ss_pred             ccc-cccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCch--HHHHHHHHhCCC-cchhcccCc
Confidence            998 5667778999999999999999999999999999999999999999999999  999999999988 899999999


Q ss_pred             CHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhc
Q 040751          258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK  322 (405)
Q Consensus       258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  322 (405)
                      |+||.+++.|         +.++++.|+.++....   .+..|.|||..|...|..++|++|++.
T Consensus       185 TALH~caEsG---------~vdivq~Ll~~ga~i~---~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  185 TALHDCAESG---------SVDIVQLLLKHGAKID---VDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             hHHHhhhhcc---------cHHHHHHHHhCCceee---ecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            9999999998         5689999999998663   334799999999999999999999963

>PHA02792 ankyrin-like protein; Provisional

Probab=99.98  E-value=3.5e-31  Score=243.46  Aligned_cols=348  Identities=12%  Similarity=0.081  Sum_probs=258.9

Q ss_pred             cccccCCCCCCCCCchhhhhhcCCHHHHHHhhcCC-CchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHH
Q 040751            8 SVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGN-VEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEE   86 (405)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~-~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~   86 (405)
                      .+..++|..|+-..++.       +||+.=....+ ..-++.++.-+..++..+.+|.+|+|+-+ +..|+.+++++|+.
T Consensus        22 ~~l~~~g~~~~~~~~~~-------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-s~n~~lElvk~LI~   93 (631)
T PHA02792         22 QSLIESGANPLYEYDGE-------TPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLC-SDNIDIELLKLLIS   93 (631)
T ss_pred             HHHHHcCCCcccccCCC-------ccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHH-HhcccHHHHHHHHH
Confidence            45677888888754443       44554433333 45567777888878778888999999864 78899999999988


Q ss_pred             HHHhCCcccccccCCCChHHHHHHH-hCcHHHHHHHHHccCCCCCchhHHhh----------------hhh--HHHHHhh
Q 040751           87 ILEKCPSLLLQVNAKGDTPLHVAAK-FGHSGIVTFLVERAKLPQHENEELES----------------GVG--AARQMIK  147 (405)
Q Consensus        87 ~~~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~----------------~~~--~~~~~~~  147 (405)
                          .+++++..+..+.||+++|+. .++.++|++|+++|++++........                ...  .....++
T Consensus        94 ----~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (631)
T PHA02792         94 ----KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTD  169 (631)
T ss_pred             ----cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccc
Confidence                488999999889999999966 69999999999999985432221111                110  0123567


Q ss_pred             hccCCCchHhHHHHhCC-------CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCc----
Q 040751          148 MTNNEKNTALHEAVCHK-------NVDVVKILTKEDPDYRYSANNDGKTPLYMAAESR--SSDMVLALLENSTSVS----  214 (405)
Q Consensus       148 ~~~~~g~t~L~~A~~~~-------~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~v~~Ll~~g~~~~----  214 (405)
                      ..+..|.||||+|+..+       +.++++.|+++|++++ ..+..|.||||+|+.+.  +.|+++.|++..-...    
T Consensus       170 ~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~  248 (631)
T PHA02792        170 YDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMN  248 (631)
T ss_pred             cCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHh
Confidence            88889999999999999       8999999999999998 68889999999999999  7899999886321000    


Q ss_pred             ---------ccCC-------------CCC------------------------------cHHHHHHhcCCccHHHHHHHH
Q 040751          215 ---------HEGP-------------NGK------------------------------TALHAAAMKFDLVDTALRKLL  242 (405)
Q Consensus       215 ---------~~~~-------------~~~------------------------------t~L~~a~~~~~~~~~~v~~Ll  242 (405)
                               .+..             .|.                              -.||.-..++.+..+++++|+
T Consensus       249 ~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LI  328 (631)
T PHA02792        249 ILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMI  328 (631)
T ss_pred             HHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHH
Confidence                     0000             011                              123444445544458889999


Q ss_pred             HhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccc-cCCccHHHHHHhcCCH---HHHHH
Q 040751          243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADK-DRKMTALHLAAGQGNA---EIVDA  318 (405)
Q Consensus       243 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~-~~g~t~l~~A~~~~~~---~~v~~  318 (405)
                      +.+....   ......+++.|+..|..         +++++|+++|+++. ..+. ..+.||||.|+.....   +++++
T Consensus       329 d~Ga~~~---r~~~~n~~~~Aa~~gn~---------eIVelLIs~GADIN-~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        329 DEGATLY---RFKHINKYFQKFDNRDP---------KVVEYILKNGNVVV-EDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             HCCCccc---cCCcchHHHHHHHcCCH---------HHHHHHHHcCCchh-hhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence            8887632   12356678899888866         58899999999984 3333 2367999998876654   46899


Q ss_pred             HHhcCCcccccccCCCChHHHHHHHhcc------------ccccccCCCCCHHHHHHH--hC--------CcHHHHHHHh
Q 040751          319 IISKNPECYELVDNRGWNFLHYAVVTRS------------LINEGDAMGNTPLHVLAA--VR--------RNEFYDVMIR  376 (405)
Q Consensus       319 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~--~~--------~~~~v~~Ll~  376 (405)
                      |+++|+++ +.+|..|+||||+|+..++            +++.+|..|.|||++|+.  .+        ..++++.||+
T Consensus       396 LIs~GADI-N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs  474 (631)
T PHA02792        396 CKPYIDDI-NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILS  474 (631)
T ss_pred             HHhcCCcc-ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            99999998 8899999999999987666            789999999999999986  22        2567999998


Q ss_pred             ccccccc
Q 040751          377 NTQVNYD  383 (405)
Q Consensus       377 ~~g~d~~  383 (405)
                      + |.++.
T Consensus       475 ~-~p~i~  480 (631)
T PHA02792        475 K-LPTIE  480 (631)
T ss_pred             c-CCChh
Confidence            7 76654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=9.9e-32  Score=239.79  Aligned_cols=210  Identities=27%  Similarity=0.277  Sum_probs=187.9

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY  181 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  181 (405)
                      ...+..|++.|.++.|+.|++. |...                  +..|.+|.|+||+|+..++.+++++|+++|++++.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v------------------~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~  106 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESV------------------NNPDREGVTLLHWAAINNRLDVARYLISHGADVNA  106 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCC------------------CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccc
Confidence            4678899999999999999999 7764                  37888999999999999999999999999999996


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751          182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH  261 (405)
Q Consensus       182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  261 (405)
                      .-..-+.||||||+++|+..+|.+|+++|++++.+|..|.+|||.|++.++.  ..+.+++..+.+ ++.+|..|+|||+
T Consensus       107 ~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~--~~vayll~~~~d-~d~~D~~grTpLm  183 (600)
T KOG0509|consen  107 IGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHT--ALVAYLLSKGAD-IDLRDNNGRTPLM  183 (600)
T ss_pred             cCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCch--HHHHHHHHhccc-CCCcCCCCCCHHH
Confidence            6668899999999999999999999999999999999999999999999999  999999999854 8999999999999


Q ss_pred             HHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHH
Q 040751          262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA  341 (405)
Q Consensus       262 ~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  341 (405)
                      +|+.+|+.         ..+..|+.-++.+ ...++..|.||||+|+..|+..++. |+..|+......|.+|+||+.+|
T Consensus       184 wAaykg~~---------~~v~~LL~f~a~~-~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  184 WAAYKGFA---------LFVRRLLKFGASL-LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             HHHHhccc---------HHHHHHHHhcccc-cccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHH
Confidence            99999833         3488899988888 5666679999999999999999999 55555444488888999999999


Q ss_pred             HHh
Q 040751          342 VVT  344 (405)
Q Consensus       342 ~~~  344 (405)
                      .+.
T Consensus       253 ~~~  255 (600)
T KOG0509|consen  253 QER  255 (600)
T ss_pred             HHh
Confidence            765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.2e-31  Score=239.16  Aligned_cols=207  Identities=26%  Similarity=0.313  Sum_probs=193.4

Q ss_pred             HHHHHHhhcCCCchhhhhHHH-HHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMARE-KIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVA  109 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A  109 (405)
                      ..++.|++.|+++.|+.+++. |.+.+..|.+|.|+||+|  |.+++.+++++|++    .+.+++..+ .-+.||||+|
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWA--AiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWA--AINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHH--HHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHH
Confidence            458999999999999999998 888888888999999999  99999999999998    688899988 5689999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCc
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKT  189 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  189 (405)
                      +++|+..+|++|+++|+++.                  .+|.+|.+|||.|+..|+.-++-+|+.+|++++ ..|..|+|
T Consensus       120 ar~G~~~vv~lLlqhGAdpt------------------~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grT  180 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPT------------------LKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRT  180 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCc------------------eecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCC
Confidence            99999999999999999975                  899999999999999999999999999999988 89999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHc
Q 040751          190 PLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYH  266 (405)
Q Consensus       190 ~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~  266 (405)
                      |||+|+..|....++.|+..|+.+...| ..|.||||+|+..|+.  .++. |+.+++......+.+|.||+.+|...
T Consensus       181 pLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~--~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  181 PLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNL--TAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCc--ceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999999888999999999999888 8899999999999999  9999 77777777888999999999999766

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.1e-28  Score=200.97  Aligned_cols=174  Identities=16%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhC--cHHHHHHHHHccCCCCCchhHHhhhhh
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFG--HSGIVTFLVERAKLPQHENEELESGVG  140 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~  140 (405)
                      +.+|||+|  +..++.+.++.|++.       ++..+..|.||||+|+..+  +.+++++|+++|++++           
T Consensus        21 ~~~pL~~A--~~~~~~~~vk~Li~~-------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn-----------   80 (209)
T PHA02859         21 YCNPLFYY--VEKDDIEGVKKWIKF-------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN-----------   80 (209)
T ss_pred             cCcHHHHH--HHhCcHHHHHHHHHh-------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC-----------
Confidence            45555555  555555555555431       2334455555555555433  4555555555555532           


Q ss_pred             HHHHHhhhcc-CCCchHhHHHHhC---CCHHHHHHHHhcCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCc
Q 040751          141 AARQMIKMTN-NEKNTALHEAVCH---KNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE--SRSSDMVLALLENSTSVS  214 (405)
Q Consensus       141 ~~~~~~~~~~-~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~--~~~~~~v~~Ll~~g~~~~  214 (405)
                             ..+ ..|.||||+|+..   ++.+++++|+++|++++ .++..|.||||+|+.  .++.+++++|+++|++++
T Consensus        81 -------~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin  152 (209)
T PHA02859         81 -------FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL  152 (209)
T ss_pred             -------ccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence                   333 2455555554432   24555555555555554 455555555555543  234555555555555555


Q ss_pred             ccCCCCCcHHHH-HHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751          215 HEGPNGKTALHA-AAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG  267 (405)
Q Consensus       215 ~~~~~~~t~L~~-a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  267 (405)
                      .+|..|.||||. |+..++.  +++++|++.+.+ ++.++..|.||+++|...+
T Consensus       153 ~~d~~g~t~Lh~~a~~~~~~--~iv~~Ll~~Gad-i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        153 NKDFDNNNILYSYILFHSDK--KIFDFLTSLGID-INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cccCCCCcHHHHHHHhcCCH--HHHHHHHHcCCC-CCCCCCCCCCHHHHHhhhh
Confidence            555555555553 2334444  555555554443 4455555555555555443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=198.14  Aligned_cols=178  Identities=12%  Similarity=0.116  Sum_probs=156.9

Q ss_pred             hhcCCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhh--hhcccHHHHHHHHHhCCccccccc-CCCC
Q 040751           27 QSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKE--RENVSTEFVEEILEKCPSLLLQVN-AKGD  103 (405)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~g~  103 (405)
                      ++...+||+.|+..|+.+.|+.|++.   .+..+..|.||||+|  +..  ++.+++++|++    .+.+++..+ ..|.
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a--~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~   88 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSC--LEKDKVNVEILKFLIE----NGADVNFKTRDNNL   88 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHH--HHcCCCCHHHHHHHHH----CCCCCCccCCCCCC
Confidence            56678899999999999999999864   667888899999999  664  47889999987    577888886 5899


Q ss_pred             hHHHHHHHh---CcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHh--CCCHHHHHHHHhcCCC
Q 040751          104 TPLHVAAKF---GHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVC--HKNVDVVKILTKEDPD  178 (405)
Q Consensus       104 t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~~~~~Ll~~~~~  178 (405)
                      ||||+|+..   ++.+++++|+++|++++                  .++..|.||||+|+.  .++.+++++|++.|++
T Consensus        89 TpLh~a~~~~~~~~~eiv~~Ll~~gadin------------------~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859         89 SALHHYLSFNKNVEPEILKILIDSGSSIT------------------EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             CHHHHHHHhCccccHHHHHHHHHCCCCCC------------------CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            999998864   47999999999999854                  889999999999986  4689999999999999


Q ss_pred             CccccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCC
Q 040751          179 YRYSANNDGKTPLYM-AAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFD  232 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~-a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~  232 (405)
                      ++ .++..|.||||. |+..++.+++++|+++|++++.+|..|.|||++|..++-
T Consensus       151 in-~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~~  204 (209)
T PHA02859        151 FL-NKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRNL  204 (209)
T ss_pred             cc-cccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhhh
Confidence            98 789999999995 566889999999999999999999999999999997643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.5e-27  Score=208.89  Aligned_cols=212  Identities=12%  Similarity=0.050  Sum_probs=172.1

Q ss_pred             HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc-----cccCCCCCcHH
Q 040751          117 IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR-----YSANNDGKTPL  191 (405)
Q Consensus       117 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~g~t~L  191 (405)
                      .-++++.+|++++                  ....+|     +|+..+..|++++|+.+|++++     ...+..++|+|
T Consensus        64 ~~~~~~~~~~~i~------------------~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L  120 (437)
T PHA02795         64 LYDYFRIHRDNID------------------QYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLL  120 (437)
T ss_pred             HHHHHHHcCcchh------------------hhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHH
Confidence            3578888888754                  444444     8899999999999999999966     13667899999


Q ss_pred             HHHHH--cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhc-----ccCCCCHHHHHH
Q 040751          192 YMAAE--SRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKET-----DQYGWTPIHYAA  264 (405)
Q Consensus       192 ~~a~~--~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~-----~~~~~t~l~~a~  264 (405)
                      |+++.  .|+.++|++|+++|++++..  ++.||+|.|+..++.  +++++|+..+....+..     +..+.+++|.|.
T Consensus       121 ~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~--eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~  196 (437)
T PHA02795        121 LYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKES--SVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVD  196 (437)
T ss_pred             HHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcH--HHHHHHHhcCCcccccccchhhhhhccchhHHHH
Confidence            99999  89999999999999999874  458999999999999  99999999986433332     234778888888


Q ss_pred             HcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHh
Q 040751          265 YHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVT  344 (405)
Q Consensus       265 ~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  344 (405)
                      ..+         ..+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++|+++|+++                  
T Consensus       197 ~~~---------~~eIve~LIs~GADI-N~kD-~~G~TpLh~Aa~~g~~eiVelLL~~GAdI------------------  247 (437)
T PHA02795        197 EPT---------VLEIYKLCIPYIEDI-NQLD-AGGRTLLYRAIYAGYIDLVSWLLENGANV------------------  247 (437)
T ss_pred             hcC---------HHHHHHHHHhCcCCc-CcCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------
Confidence            877         457999999999988 4444 48999999999999999999999999985                  


Q ss_pred             ccccccccCCCCCHHHHHHHhC--------CcHHHHHHHhccccccccccCCC
Q 040751          345 RSLINEGDAMGNTPLHVLAAVR--------RNEFYDVMIRNTQVNYDAVNKQN  389 (405)
Q Consensus       345 ~~~~~~~~~~g~t~L~~a~~~~--------~~~~v~~Ll~~~g~d~~~~~~~g  389 (405)
                          +.+|..|.||||+|+..|        +.+++++|+++ |++++..+..+
T Consensus       248 ----N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~-gadI~~~~~~~  295 (437)
T PHA02795        248 ----NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE-PLSIDCIKLAI  295 (437)
T ss_pred             ----CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC-CCCCCchhHHh
Confidence                455566677777777766        46899999987 99888765443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.3e-26  Score=204.36  Aligned_cols=213  Identities=15%  Similarity=0.118  Sum_probs=178.8

Q ss_pred             cHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHH
Q 040751           80 STEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHE  159 (405)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  159 (405)
                      .++.|.+++-..+..++....+|     +|+..+..+++++|+.+|++++..+.            +-..+..++|+||.
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~------------~~~~~~~~~~~L~~  122 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSI------------IIKNCNSVQDLLLY  122 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhh------------hhhccccccHHHHH
Confidence            45667777777788888777777     99999999999999999998541110            11366779999999


Q ss_pred             HHh--CCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-cc-----CCCCCcHHHHHHhcC
Q 040751          160 AVC--HKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS-HE-----GPNGKTALHAAAMKF  231 (405)
Q Consensus       160 A~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~-~~-----~~~~~t~L~~a~~~~  231 (405)
                      ++.  .|+.+++++|+++|++++ .  .++.||+|.|+..++.+++++|+++|++.. ..     +..+.+++|.|...+
T Consensus       123 ~~~n~~n~~eiV~~LI~~GADIn-~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~  199 (437)
T PHA02795        123 YLSNAYVEIDIVDFMVDHGAVIY-K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPT  199 (437)
T ss_pred             HHHhcCCCHHHHHHHHHCCCCCC-C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcC
Confidence            999  899999999999999997 3  355899999999999999999999998542 22     134778999999999


Q ss_pred             CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcC
Q 040751          232 DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG  311 (405)
Q Consensus       232 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~  311 (405)
                      ..  +++++|+..+++ ++.++..|.||||+|+..|         +.+++++|+++|+++ +..+ ..|.||||+|+..|
T Consensus       200 ~~--eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g---------~~eiVelLL~~GAdI-N~~d-~~G~TpLh~Aa~~g  265 (437)
T PHA02795        200 VL--EIYKLCIPYIED-INQLDAGGRTLLYRAIYAG---------YIDLVSWLLENGANV-NAVM-SNGYTCLDVAVDRG  265 (437)
T ss_pred             HH--HHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcC
Confidence            88  999999998866 8999999999999999998         558999999999988 4444 48999999999998


Q ss_pred             C--------HHHHHHHHhcCCcc
Q 040751          312 N--------AEIVDAIISKNPEC  326 (405)
Q Consensus       312 ~--------~~~v~~Ll~~~~~~  326 (405)
                      +        .+++++|+++|+++
T Consensus       266 ~~~~~~~~~~eIvelLL~~gadI  288 (437)
T PHA02795        266 SVIARRETHLKILEILLREPLSI  288 (437)
T ss_pred             CcccccccHHHHHHHHHhCCCCC
Confidence            4        69999999999876

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.95  E-value=3.4e-28  Score=227.25  Aligned_cols=318  Identities=17%  Similarity=0.191  Sum_probs=264.9

Q ss_pred             hhhhhhcCCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCC
Q 040751           23 GEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKG  102 (405)
Q Consensus        23 ~~~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g  102 (405)
                      ++....+.+.+|-.|++.|+.|.|..|+.+|.++..++..|.+||.+|  +-.|+..+++.|+..   .-+.....|..+
T Consensus       750 d~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIma--atagh~tvV~~llk~---ha~veaQsdrtk  824 (2131)
T KOG4369|consen  750 DPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMA--ATAGHITVVQDLLKA---HADVEAQSDRTK  824 (2131)
T ss_pred             ccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhh--cccCchHHHHHHHhh---hhhhhhhccccc
Confidence            444566788899999999999999999999999999999999999999  999999999998773   233344678889


Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      .|+|.+||.-|+.++|++||..|++..                  -++...+|||..|...|..+++..|+..|..++..
T Consensus       825 dt~lSlacsggr~~vvelLl~~ganke------------------hrnvsDytPlsla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKE------------------HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhcccc------------------ccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence            999999999999999999999998854                  56667899999999999999999999999888744


Q ss_pred             c-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751          183 A-NNDGKTPLYMAAESRSSDMVLALLENSTSVSHE-GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI  260 (405)
Q Consensus       183 ~-~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  260 (405)
                      . ++.|..||++|...|+.+.++.|++.|.++|.. ..+..|.|..|+..|+.  +++..||..... +..+.+.|.|||
T Consensus       887 tgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~--evv~lLLa~~an-vehRaktgltpl  963 (2131)
T KOG4369|consen  887 TGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP--EVVFLLLAAQAN-VEHRAKTGLTPL  963 (2131)
T ss_pred             cccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc--hHHHHHHHHhhh-hhhhcccCCccc
Confidence            3 557899999999999999999999999999864 34577999999999999  999988887766 778889999999


Q ss_pred             HHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHH
Q 040751          261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHY  340 (405)
Q Consensus       261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  340 (405)
                      ..++..|+.         ++-++|+..|++.+........-|+|.+++..|+...++.|+...+.+ .+++++|.|+|-.
T Consensus       964 me~AsgGyv---------dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv-~v~NkkG~T~Lwl 1033 (2131)
T KOG4369|consen  964 MEMASGGYV---------DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATV-RVPNKKGCTVLWL 1033 (2131)
T ss_pred             chhhcCCcc---------ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccce-ecccCCCCcccch
Confidence            999999844         788899999999977666667779999999999999999999876654 6666666666666


Q ss_pred             HHHhcc------------ccccccCCCCCHHHHHHHhCCcHHHHHHHh
Q 040751          341 AVVTRS------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIR  376 (405)
Q Consensus       341 a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~  376 (405)
                      |+.-+.            +.+..|....|+++-|.+.|+.+||+++..
T Consensus      1034 a~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1034 ASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             hccCCccccchHHhhcccChhhhhcccccccHHHHHhchhheeccccC
Confidence            654444            455555666666666666666666666654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-27  Score=214.66  Aligned_cols=260  Identities=21%  Similarity=0.228  Sum_probs=214.9

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      +..+..|++.||++.|..+|+..-        +..++-.+  .                ..++..+..|..|.|+||.|+
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~--------~r~~~l~~--~----------------trsds~n~qd~~gfTalhha~   57 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKK--------GRSGLLFF--T----------------TRSDSHNLQDYSGFTLLHHAV   57 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCC--------CCCCCCCC--C----------------CCCccccccCccchhHHHHHH
Confidence            456889999999999999987643        23333333  1                124456677889999999999


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP  190 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  190 (405)
                      .+|+.++++.|+++.+.                  ++..+..|.+|||+|+..|+.++++.|+.++..++ .....|.||
T Consensus        58 Lng~~~is~llle~ea~------------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tp  118 (854)
T KOG0507|consen   58 LNGQNQISKLLLDYEAL------------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETP  118 (854)
T ss_pred             hcCchHHHHHHhcchhh------------------hhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-cccccCcCc
Confidence            99999999999998765                  56788999999999999999999999999996665 888899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhh
Q 040751          191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW  270 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~  270 (405)
                      ||.|++.|+.+++.+|+.+|+++..++..+.|+|..|++.|..  .+++.|+..... ..                    
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~--~Vvq~ll~~~~~-~~--------------------  175 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRA--EVVQMLLQKKFP-VQ--------------------  175 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhh--HHHHHHhhhccc-hh--------------------
Confidence            9999999999999999999999999999999999999999999  999999876211 00                    


Q ss_pred             hhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcccccc
Q 040751          271 INRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINE  350 (405)
Q Consensus       271 ~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  350 (405)
                                  .+...+    .......+.+|+|.|+++|+.++++.|++.|-++ +                     .
T Consensus       176 ------------~~~~~~----~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di-n---------------------~  217 (854)
T KOG0507|consen  176 ------------SSLRVG----DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI-N---------------------Y  217 (854)
T ss_pred             ------------hcccCC----CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc-c---------------------c
Confidence                        011111    1112237789999999999999999999999886 2                     2


Q ss_pred             ccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhc
Q 040751          351 GDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDY  398 (405)
Q Consensus       351 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~  398 (405)
                      .. ..-|+||.|+..|..++|.+||+. |++..++|..|+|+|++...
T Consensus       218 ~t-~~gtalheaalcgk~evvr~ll~~-gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  218 TT-EDGTALHEAALCGKAEVVRFLLEI-GINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             cc-ccchhhhhHhhcCcchhhhHHHhh-ccccccccccchHHHHHHHh
Confidence            22 234999999999999999999997 99999999999999998765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.3e-24  Score=215.51  Aligned_cols=168  Identities=20%  Similarity=0.247  Sum_probs=84.5

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      ..+|+.||..||.+.++.|++.|.+++..|..|.||||+|  +..|+.+++++|++    .+.+++..|.+|.||||+|+
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~A--a~~g~~~~v~~Ll~----~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIA--ASKGYEDCVLVLLK----HACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcChHHHHHHHHh----cCCCCCCcCCCCCCHHHHHH
Confidence            3445555555555555555555555555555555555555  55555555555444    23444445555555555555


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP  190 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  190 (405)
                      ..|+.+++++|++.++..                    ....+.++||.|+..|+.++++.|+++|++++ ..+..|.||
T Consensus       600 ~~g~~~iv~~L~~~~~~~--------------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-~~d~~G~Tp  658 (823)
T PLN03192        600 SAKHHKIFRILYHFASIS--------------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD-SEDHQGATA  658 (823)
T ss_pred             HhCCHHHHHHHHhcCccc--------------------CcccCchHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCH
Confidence            555555555555444321                    11233445555555555555555555555554 444555555


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CcHHH
Q 040751          191 LYMAAESRSSDMVLALLENSTSVSHEGPNG-KTALH  225 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~  225 (405)
                      ||+|+..|+.+++++|+++|++++..+..+ .+|+.
T Consensus       659 Lh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~  694 (823)
T PLN03192        659 LQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTE  694 (823)
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence            555555555555555555555555554444 44443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.6e-24  Score=213.96  Aligned_cols=252  Identities=21%  Similarity=0.174  Sum_probs=181.8

Q ss_pred             cCCHHHHHHhhcCCCchhhhhHHH--HHHHhhhhccccchhh-HhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChH
Q 040751           29 QMDPKFFKAAADGNVEPFKDMARE--KIESLLTAKTRNTILH-INIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTP  105 (405)
Q Consensus        29 ~~~~~l~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~~~L~-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  105 (405)
                      ..+..|+.||+.||.+.|+.+++.  +.+.+..|..|.|||| .|  +..++.++++.|++.    +.    .+..|.||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A--~~~~~~eiv~lLl~~----g~----~~~~G~T~   85 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAA--IENENLELTELLLNL----SC----RGAVGDTL   85 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHH--HhcChHHHHHHHHhC----CC----CCCcChHH
Confidence            446789999999999999999998  7888888888999999 67  888899999988772    22    67789999


Q ss_pred             HHHHHHhC---cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          106 LHVAAKFG---HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       106 L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      ||.|+..+   ...++..+.+.+......        .............|.||||+|+..|+.+++++|+++|++++..
T Consensus        86 Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~--------~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~  157 (743)
T TIGR00870        86 LHAISLEYVDAVEAILLHLLAAFRKSGPL--------ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR  157 (743)
T ss_pred             HHHHHhccHHHHHHHHHHHhhcccccCch--------hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC
Confidence            99998722   233344444433221000        0000001123457999999999999999999999999998732


Q ss_pred             c-------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCc-------cHHHHHHHH
Q 040751          183 A-------------NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDL-------VDTALRKLL  242 (405)
Q Consensus       183 ~-------------~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~-------~~~~v~~Ll  242 (405)
                      .             ...|.||||.|+..|+.+++++|+++|++++..|..|+||||.|+..+..       ...+.+.++
T Consensus       158 ~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~  237 (743)
T TIGR00870       158 ACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFAL  237 (743)
T ss_pred             cCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            1             13589999999999999999999999999999999999999999988632       012344444


Q ss_pred             Hhhhhh------hhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHh
Q 040751          243 EKKENL------IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG  309 (405)
Q Consensus       243 ~~~~~~------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~  309 (405)
                      ......      .+..|..|.|||++|+..|         +.+++++|++.+.....  ...+...|.+.+..
T Consensus       238 ~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g---------~~~l~~lLL~~~~~~kk--~~a~~~~~~~~~~~  299 (743)
T TIGR00870       238 SLLDKLRDSKELEVILNHQGLTPLKLAAKEG---------RIVLFRLKLAIKYKQKK--FVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHhccCChHhhhhhcCCCCCCchhhhhhcC---------CccHHHHHHHHHHhcce--eeccCcchHhHhhh
Confidence            433221      1456889999999999998         55788888875432211  11244556555543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.3e-23  Score=208.43  Aligned_cols=191  Identities=19%  Similarity=0.224  Sum_probs=161.7

Q ss_pred             HHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          166 VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      .++-.++.+.+...   .+..+.++|+.|+..|+.++++.|++.|++++..|..|.||||.|+..|+.  ++++.|+..+
T Consensus       507 l~v~~ll~~~~~~~---~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~--~~v~~Ll~~g  581 (823)
T PLN03192        507 LNVGDLLGDNGGEH---DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYE--DCVLVLLKHA  581 (823)
T ss_pred             ccHHHHHhhccccc---CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChH--HHHHHHHhcC
Confidence            34444444444432   344567999999999999999999999999999999999999999999999  9999999976


Q ss_pred             hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCc
Q 040751          246 ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPE  325 (405)
Q Consensus       246 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  325 (405)
                      .+ ++.+|..|.||||.|+..|         +.+++++|++.+...    ....+.++||.|+..|+.+++++|+++|++
T Consensus       582 ad-in~~d~~G~TpL~~A~~~g---------~~~iv~~L~~~~~~~----~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad  647 (823)
T PLN03192        582 CN-VHIRDANGNTALWNAISAK---------HHKIFRILYHFASIS----DPHAAGDLLCTAAKRNDLTAMKELLKQGLN  647 (823)
T ss_pred             CC-CCCcCCCCCCHHHHHHHhC---------CHHHHHHHHhcCccc----CcccCchHHHHHHHhCCHHHHHHHHHCCCC
Confidence            65 7889999999999999998         456888888766543    223677999999999999999999999987


Q ss_pred             ccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCC-Cchhhhhhc
Q 040751          326 CYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQN-VSVEHILDY  398 (405)
Q Consensus       326 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g-~t~l~~a~~  398 (405)
                                            +|.+|..|.||||+|+..|+.+++++|+++ |+|++..|..| .+|.+++..
T Consensus       648 ----------------------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~-GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        648 ----------------------VDSEDHQGATALQVAMAEDHVDMVRLLIMN-GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             ----------------------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence                                  566778899999999999999999999997 99999999998 899988754

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=7.7e-25  Score=169.75  Aligned_cols=215  Identities=21%  Similarity=0.277  Sum_probs=182.1

Q ss_pred             hccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751          148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA  227 (405)
Q Consensus       148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  227 (405)
                      ..+..|..-+..+.+.++.++...+....++.+...+..|+.+++.+...++...++.++.+|...+..+.-+++|+.++
T Consensus        57 ~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~sls  136 (296)
T KOG0502|consen   57 LRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLS  136 (296)
T ss_pred             HHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHH
Confidence            34566778888899999999999888887776666788899999999999999999999999999999889999999999


Q ss_pred             HhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHH
Q 040751          228 AMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLA  307 (405)
Q Consensus       228 ~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A  307 (405)
                      +...+.  +.+..+.+   ..++..|+.|.|||.+|+.+|         +++++++|++.|+++....+  ...++|.+|
T Consensus       137 Vhql~L--~~~~~~~~---n~VN~~De~GfTpLiWAaa~G---------~i~vV~fLL~~GAdp~~lgk--~resALsLA  200 (296)
T KOG0502|consen  137 VHQLHL--DVVDLLVN---NKVNACDEFGFTPLIWAAAKG---------HIPVVQFLLNSGADPDALGK--YRESALSLA  200 (296)
T ss_pred             HHHHHH--HHHHHHhh---ccccCccccCchHhHHHHhcC---------chHHHHHHHHcCCChhhhhh--hhhhhHhHH
Confidence            988776  66555544   337889999999999999998         66899999999998844332  667999999


Q ss_pred             HhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751          308 AGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK  387 (405)
Q Consensus       308 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~  387 (405)
                      ++.|..++|++|+.++.++                      |.-|.+|-|||-||++-++.++++.||.. |+|++..+.
T Consensus       201 t~ggytdiV~lLL~r~vdV----------------------NvyDwNGgTpLlyAvrgnhvkcve~Ll~s-GAd~t~e~d  257 (296)
T KOG0502|consen  201 TRGGYTDIVELLLTREVDV----------------------NVYDWNGGTPLLYAVRGNHVKCVESLLNS-GADVTQEDD  257 (296)
T ss_pred             hcCChHHHHHHHHhcCCCc----------------------ceeccCCCceeeeeecCChHHHHHHHHhc-CCCcccccc
Confidence            9999999999999998874                      55567778888888888999999999987 999999999


Q ss_pred             CCCchhhhhhcccc
Q 040751          388 QNVSVEHILDYEHI  401 (405)
Q Consensus       388 ~g~t~l~~a~~~~~  401 (405)
                      .|.+++++|...|+
T Consensus       258 sGy~~mdlAValGy  271 (296)
T KOG0502|consen  258 SGYWIMDLAVALGY  271 (296)
T ss_pred             cCCcHHHHHHHhhh
Confidence            99999998887664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=5.8e-24  Score=209.98  Aligned_cols=227  Identities=24%  Similarity=0.246  Sum_probs=176.3

Q ss_pred             CCchHhHHHHhCCCHHHHHHHHhc--CCCCccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 040751          152 EKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLY-MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAA  228 (405)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~L~-~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~  228 (405)
                      .+..+++.|+..|+.+.++.+++.  +.+++ ..|..|.|||| .|+..++.++++.|+++|+    .+..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNIN-CPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCC-CcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            567899999999999999999998  78877 78899999999 8888999999999999998    5678999999999


Q ss_pred             hcCCc-cHHHHHHHHHhhhh-----hh----hhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccccc--
Q 040751          229 MKFDL-VDTALRKLLEKKEN-----LI----KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIAD--  296 (405)
Q Consensus       229 ~~~~~-~~~~v~~Ll~~~~~-----~~----~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~--  296 (405)
                      ..+.. ...++..+......     ..    ......|.||||+|+..|         +.+++++|+++|++++....  
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~---------~~eiVklLL~~GAdv~~~~~~~  161 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQ---------NYEIVKLLLERGASVPARACGD  161 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhC---------CHHHHHHHHhCCCCCCcCcCCc
Confidence            73222 11223333322211     01    112346999999999998         66899999999988852210  


Q ss_pred             ----------ccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc--------------------
Q 040751          297 ----------KDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS--------------------  346 (405)
Q Consensus       297 ----------~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~--------------------  346 (405)
                                ...|.||||.|+..++.+++++|+++|+++ +.+|..|+||||+|+..+.                    
T Consensus       162 ~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll  240 (743)
T TIGR00870       162 FFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLL  240 (743)
T ss_pred             hhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                      135899999999999999999999999987 7899999999999998761                    


Q ss_pred             --------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhh
Q 040751          347 --------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEH  394 (405)
Q Consensus       347 --------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~  394 (405)
                              ..+..|..|.||||+|+..|+.+++++|++. +++..........|.+
T Consensus       241 ~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~-~~~~kk~~a~~~~~~~  295 (743)
T TIGR00870       241 DKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI-KYKQKKFVAWPNGQQL  295 (743)
T ss_pred             hccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH-HHhcceeeccCcchHh
Confidence                    1156688999999999999999999999985 4443333333333333

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=6.3e-25  Score=170.24  Aligned_cols=219  Identities=18%  Similarity=0.152  Sum_probs=168.7

Q ss_pred             HHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751           33 KFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK  111 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  111 (405)
                      .+-.+.+.|+.+.++..+.-..+.. ..+.+|++.++.+  +-+++..++...+.    .+...+..+--+.+|+.+++.
T Consensus        65 ~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~--ap~~s~~k~sttlt----N~~rgnevs~~p~s~~slsVh  138 (296)
T KOG0502|consen   65 LLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVA--APCGSVDKVSTTLT----NGARGNEVSLMPWSPLSLSVH  138 (296)
T ss_pred             ccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhc--CCCCCcceeeeeec----ccccCCccccccCChhhHHHH
Confidence            3445566666666666555444333 3444477777777  66666666666555    355566677777777777777


Q ss_pred             hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHH
Q 040751          112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL  191 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  191 (405)
                      ..+++.+..+.++.                    ++..|..|.|||.+|+..|+.+++++|++.|+++. ...+...++|
T Consensus       139 ql~L~~~~~~~~n~--------------------VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resAL  197 (296)
T KOG0502|consen  139 QLHLDVVDLLVNNK--------------------VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESAL  197 (296)
T ss_pred             HHHHHHHHHHhhcc--------------------ccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhH
Confidence            77777776666554                    55788899999999999999999999999999987 6778888999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhh
Q 040751          192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI  271 (405)
Q Consensus       192 ~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  271 (405)
                      .+|++.|..++|+.|+.++.++|.-|.+|-|||-+|++-++.  ++++.|+..+.+ ++..+..|++++..|+..|+.  
T Consensus       198 sLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhv--kcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr--  272 (296)
T KOG0502|consen  198 SLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHV--KCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR--  272 (296)
T ss_pred             hHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChH--HHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH--
Confidence            999999999999999999999999999999999999999999  999999988877 677888899999999988843  


Q ss_pred             hhhccccchhHHHHhhcccc
Q 040751          272 NRFYGNYGTVNLLLETDQSA  291 (405)
Q Consensus       272 ~~~l~~~~~~~~Ll~~~~~~  291 (405)
                              +++..++.....
T Consensus       273 --------~Vqqvie~h~lk  284 (296)
T KOG0502|consen  273 --------IVQQVIEKHALK  284 (296)
T ss_pred             --------HHHHHHHHHHHH
Confidence                    666666655443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-24  Score=203.90  Aligned_cols=270  Identities=21%  Similarity=0.205  Sum_probs=213.5

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCC
Q 040751          100 AKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY  179 (405)
Q Consensus       100 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  179 (405)
                      .+-.|+|..||..|+.|+|++|+..|++                  ++-+|..|.+||.+|+-.|+..+|+.|+++.+++
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rgan------------------iehrdkkgf~plImaatagh~tvV~~llk~ha~v  816 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGAN------------------IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV  816 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccc------------------ccccccccchhhhhhcccCchHHHHHHHhhhhhh
Confidence            3456999999999999999999999998                  4588999999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhc--ccCCC
Q 040751          180 RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKET--DQYGW  257 (405)
Q Consensus       180 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~--~~~~~  257 (405)
                      ....|+.+.|+|.+||..|+.++|+.|+..|++-..++....|||.+|..-|..  ++++.|+..+.. ++.+  .+.|.
T Consensus       817 eaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~--~iI~~llS~Gse-InSrtgSklgi  893 (2131)
T KOG4369|consen  817 EAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYT--KIIHALLSSGSE-INSRTGSKLGI  893 (2131)
T ss_pred             hhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchH--HHHHHHhhcccc-cccccccccCc
Confidence            878899999999999999999999999999999999999999999999999999  999999998865 4433  46799


Q ss_pred             CHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChH
Q 040751          258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNF  337 (405)
Q Consensus       258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  337 (405)
                      +||.+|...|         +.+..+.|++.+.++ +.....+.+|+|-+|+-.|+.+++.+||.+.+.. ..+-+.|.||
T Consensus       894 sPLmlatmng---------h~~at~~ll~~gsdi-NaqIeTNrnTaltla~fqgr~evv~lLLa~~anv-ehRaktgltp  962 (2131)
T KOG4369|consen  894 SPLMLATMNG---------HQAATLSLLQPGSDI-NAQIETNRNTALTLALFQGRPEVVFLLLAAQANV-EHRAKTGLTP  962 (2131)
T ss_pred             chhhhhhhcc---------ccHHHHHHhcccchh-ccccccccccceeeccccCcchHHHHHHHHhhhh-hhhcccCCcc
Confidence            9999999998         446777888888777 4444447778888888888888888888887776 6677888888


Q ss_pred             HHHHHHhcc------------ccccc--cCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccccc
Q 040751          338 LHYAVVTRS------------LINEG--DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHIL  402 (405)
Q Consensus       338 l~~a~~~~~------------~~~~~--~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~  402 (405)
                      |+-++..|.            +.|.-  -....|+|-+++..||...|+.|+.. .+.+..+|++|.|+|.+|+-.+++
T Consensus       963 lme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~-~atv~v~NkkG~T~Lwla~~Gg~l 1040 (2131)
T KOG4369|consen  963 LMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG-DATVRVPNKKGCTVLWLASAGGAL 1040 (2131)
T ss_pred             cchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCC-ccceecccCCCCcccchhccCCcc
Confidence            888776666            11111  12233555555555555555555543 555555555555555555554443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=9.8e-23  Score=178.62  Aligned_cols=231  Identities=24%  Similarity=0.309  Sum_probs=183.7

Q ss_pred             HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC
Q 040751          105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN  184 (405)
Q Consensus       105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  184 (405)
                      .+.-|+..|..+-|..|+..|+.++                  ..+.+|.|+||.++...+.+|+++|+++|++++ ..|
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~------------------~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d  103 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPN------------------LCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQD  103 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCcc------------------ccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccc
Confidence            4677889999999999999998854                  889999999999999999999999999999999 889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHH
Q 040751          185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA  264 (405)
Q Consensus       185 ~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  264 (405)
                      ..++||||.|+..|+..++++|+++|+++...+.+|..|...+..-...  +++..-....          |.+ + -++
T Consensus       104 ~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~--~~l~~~~~r~----------gi~-i-ea~  169 (527)
T KOG0505|consen  104 NEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATL--DVLETEMARQ----------GID-I-EAA  169 (527)
T ss_pred             cccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchh--HHHHHHHHHh----------ccc-H-HHH
Confidence            9999999999999999999999999999999999999998776644333  3332222221          222 1 121


Q ss_pred             HcC-hhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHH
Q 040751          265 YHG-MYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVV  343 (405)
Q Consensus       265 ~~~-~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~  343 (405)
                      ..- -..+.      .-+...+..|... ..... .|-|.||+|+.+|..++.++|++.|.+                  
T Consensus       170 R~~~e~~ml------~D~~q~l~~G~~~-d~~~~-rG~T~lHvAaa~Gy~e~~~lLl~ag~~------------------  223 (527)
T KOG0505|consen  170 RKAEEQTML------DDARQWLNAGAEL-DARHA-RGATALHVAAANGYTEVAALLLQAGYS------------------  223 (527)
T ss_pred             hhhhHHHHH------HHHHHHHhccccc-ccccc-ccchHHHHHHhhhHHHHHHHHHHhccC------------------
Confidence            111 01111      1233344455554 33333 488999999999999999999999887                  


Q ss_pred             hccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751          344 TRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       344 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                          ++.+|.+|+||||.|+.-|..+++++|+++ |++.+.+.+.|++|+++|...
T Consensus       224 ----~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~-ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  224 ----VNIKDYDGWTPLHAAAHWGQEDACELLVEH-GADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             ----cccccccCCCcccHHHHhhhHhHHHHHHHh-hcccchhhhcCCCCccchhhh
Confidence                466778888999999999999999999988 999999999999999998763

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=5.8e-22  Score=158.07  Aligned_cols=149  Identities=16%  Similarity=0.149  Sum_probs=118.4

Q ss_pred             HHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHH---HHHHHHccCCC
Q 040751           52 EKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGI---VTFLVERAKLP  128 (405)
Q Consensus        52 ~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~---v~~Ll~~~~~~  128 (405)
                      ++.+.+..+.++.++||.|  ++.|+.+.+..+++.+...+..++..|..|+||||+|+..|+.+.   +++|+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a--~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRI--CRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHH--HHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            4566666667788889988  888887655555544555666777888889999999998887554   78899998875


Q ss_pred             CCchhHHhhhhhHHHHHhhhcc-CCCchHhHHHHhCCCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040751          129 QHENEELESGVGAARQMIKMTN-NEKNTALHEAVCHKNVDVVKILTK-EDPDYRYSANNDGKTPLYMAAESRSSDMVLAL  206 (405)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L  206 (405)
                      +                  .++ ..|.||||+|+..++.+++++|+. .|++++ ..+..|.||||+|+..++.+++++|
T Consensus        87 n------------------~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         87 N------------------ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             C------------------CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4                  666 478899999999999999999985 688877 6788899999999999999999999


Q ss_pred             HHcCCCCcccCCCCC
Q 040751          207 LENSTSVSHEGPNGK  221 (405)
Q Consensus       207 l~~g~~~~~~~~~~~  221 (405)
                      +++|++++.++..|.
T Consensus       148 l~~ga~~~~~~~~~~  162 (166)
T PHA02743        148 RANGAVCDDPLSIGL  162 (166)
T ss_pred             HHcCCCCCCcccCCc
Confidence            999988888776654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=3.2e-22  Score=181.70  Aligned_cols=219  Identities=24%  Similarity=0.237  Sum_probs=188.9

Q ss_pred             CchhhhhhcCC--HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccc
Q 040751           21 STGEISQSQMD--PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQV   98 (405)
Q Consensus        21 ~~~~~~~~~~~--~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~   98 (405)
                      ..++..+.++.  +.||.|+.+|+.++++.|++...-....+..|.+|||+|  ++.|+.++++.++.    ..+.++..
T Consensus        38 rsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhla--aw~g~~e~vkmll~----q~d~~na~  111 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLA--AWNGNLEIVKMLLL----QTDILNAV  111 (854)
T ss_pred             CCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEeh--hhcCcchHHHHHHh----cccCCCcc
Confidence            33444444443  589999999999999999998876666667799999999  99999999999876    24778889


Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD  178 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  178 (405)
                      +..|.||||.|+..|+.++|.+|+.+|+++.                  +.+..+.|+|-.|++.|..++++.|++....
T Consensus       112 ~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~------------------i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~  173 (854)
T KOG0507|consen  112 NIENETPLHLAAQHGHLEVVFYLLKKNADPF------------------IRNNSKETVLDLASRFGRAEVVQMLLQKKFP  173 (854)
T ss_pred             cccCcCccchhhhhcchHHHHHHHhcCCCcc------------------ccCcccccHHHHHHHhhhhHHHHHHhhhccc
Confidence            9999999999999999999999999999986                  8899999999999999999999999987322


Q ss_pred             Cc-------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhh
Q 040751          179 YR-------YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKE  251 (405)
Q Consensus       179 ~~-------~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~  251 (405)
                      ..       ..++..+.+|||.|.++|+.++++.|++.|.+++.....| |+||.|+..|..  ++|.+|++.+.. ...
T Consensus       174 ~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~--evvr~ll~~gin-~h~  249 (854)
T KOG0507|consen  174 VQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKA--EVVRFLLEIGIN-THI  249 (854)
T ss_pred             hhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcc--hhhhHHHhhccc-ccc
Confidence            11       1345578899999999999999999999999999876555 999999999999  999999998876 688


Q ss_pred             cccCCCCHHHHHHHcC
Q 040751          252 TDQYGWTPIHYAAYHG  267 (405)
Q Consensus       252 ~~~~~~t~l~~a~~~~  267 (405)
                      ++.+|+|.|......-
T Consensus       250 ~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  250 KNQHGQTALDIIIDLQ  265 (854)
T ss_pred             ccccchHHHHHHHhcc
Confidence            8999999998876543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=7.9e-23  Score=170.36  Aligned_cols=162  Identities=21%  Similarity=0.272  Sum_probs=119.8

Q ss_pred             CcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc
Q 040751          213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS  292 (405)
Q Consensus       213 ~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~  292 (405)
                      +|..|.+|.|+||+++...++  ++|+.||..+..+++..+.-|+||+++++...    .+--.+.++|..|+..|. + 
T Consensus       261 VNlaDsNGNTALHYsVSHaNF--~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~----lk~~~d~~vV~~LF~mgn-V-  332 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANF--DVVSILLDSGVCDVDQQNRAGYTPVMLAALAK----LKQPADRTVVERLFKMGD-V-  332 (452)
T ss_pred             hhhhcCCCCeeeeeeecccch--HHHHHHhccCcccccccccccccHHHHHHHHh----hcchhhHHHHHHHHhccC-c-
Confidence            355566777777777777777  77777777776667777777777777766543    222224456666766653 2 


Q ss_pred             ccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHH
Q 040751          293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD  372 (405)
Q Consensus       293 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~  372 (405)
                      +......|+|+|++|+.+|+.++++.|+..|++                      +|.+|.+|.|+||+|+..||.+|++
T Consensus       333 NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd----------------------VNiQDdDGSTALMCA~EHGhkEivk  390 (452)
T KOG0514|consen  333 NAKASQHGQTALMLAVSHGRVDMVKALLACGAD----------------------VNIQDDDGSTALMCAAEHGHKEIVK  390 (452)
T ss_pred             chhhhhhcchhhhhhhhcCcHHHHHHHHHccCC----------------------CccccCCccHHHhhhhhhChHHHHH
Confidence            334445888888888888888888888888877                      5667778888888888888888888


Q ss_pred             HHHhccccccccccCCCCchhhhhhcccccCC
Q 040751          373 VMIRNTQVNYDAVNKQNVSVEHILDYEHILDF  404 (405)
Q Consensus       373 ~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~~  404 (405)
                      +||...++|+...|.+|-|+|.+|.++|+.|+
T Consensus       391 lLLA~p~cd~sLtD~DgSTAl~IAleagh~eI  422 (452)
T KOG0514|consen  391 LLLAVPSCDISLTDVDGSTALSIALEAGHREI  422 (452)
T ss_pred             HHhccCcccceeecCCCchhhhhHHhcCchHH
Confidence            88888888888888888888888888887764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=4.4e-22  Score=165.96  Aligned_cols=158  Identities=27%  Similarity=0.257  Sum_probs=141.8

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC-----CCHHHH
Q 040751           95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH-----KNVDVV  169 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-----~~~~~~  169 (405)
                      ++.-|.+|+|+||||+..+++++|+.||+.|.+.                 ++..+.-|+||++.++..     .+.++|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~-----------------VD~qNrAGYtpiMLaALA~lk~~~d~~vV  323 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCD-----------------VDQQNRAGYTPVMLAALAKLKQPADRTVV  323 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCccc-----------------ccccccccccHHHHHHHHhhcchhhHHHH
Confidence            5778999999999999999999999999998664                 678899999999998753     457788


Q ss_pred             HHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhh
Q 040751          170 KILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLI  249 (405)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~  249 (405)
                      ..|.+-|- +|......|+|+|++|+..|+.++|+.|+..|+|+|.+|.+|.|+|++||..|+.  ++++.||.....+.
T Consensus       324 ~~LF~mgn-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhk--EivklLLA~p~cd~  400 (452)
T KOG0514|consen  324 ERLFKMGD-VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHK--EIVKLLLAVPSCDI  400 (452)
T ss_pred             HHHHhccC-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChH--HHHHHHhccCcccc
Confidence            88887664 4446788999999999999999999999999999999999999999999999999  99999999988889


Q ss_pred             hhcccCCCCHHHHHHHcChhhhh
Q 040751          250 KETDQYGWTPIHYAAYHGMYWIN  272 (405)
Q Consensus       250 ~~~~~~~~t~l~~a~~~~~~~~~  272 (405)
                      ...|.+|.|+|..|...|+.+|.
T Consensus       401 sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  401 SLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             eeecCCCchhhhhHHhcCchHHH
Confidence            99999999999999999965443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=1e-21  Score=172.36  Aligned_cols=223  Identities=21%  Similarity=0.219  Sum_probs=167.4

Q ss_pred             HHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHh
Q 040751           33 KFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKF  112 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~  112 (405)
                      .+..|+..|+.+.|..|+..|.+++..+.+|.|+||-|  +...+.+|+++|++    .+..++..|..|+||||.|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~--~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQA--CIDDNLEMVKFLVE----NGANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHH--HhcccHHHHHHHHH----hcCCccccccccCCcchhhccc
Confidence            58999999999999999999998898889999999999  99999999999988    5889999999999999999999


Q ss_pred             CcHHHHHHHHHccCCCCCchhHHh--hhhhH----HHHHhhhccCCCchHhHHHHhCCCHH---HHHHHHhcCCCCcccc
Q 040751          113 GHSGIVTFLVERAKLPQHENEELE--SGVGA----ARQMIKMTNNEKNTALHEAVCHKNVD---VVKILTKEDPDYRYSA  183 (405)
Q Consensus       113 g~~~~v~~Ll~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~g~t~L~~A~~~~~~~---~~~~Ll~~~~~~~~~~  183 (405)
                      |+..++++|+++|++....+....  .....    ........+..|.+ +..+-..-...   -+...+..|.... ..
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-iea~R~~~e~~ml~D~~q~l~~G~~~d-~~  194 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-IEAARKAEEQTMLDDARQWLNAGAELD-AR  194 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-HHHHhhhhHHHHHHHHHHHHhcccccc-cc
Confidence            999999999999998542221100  00000    00000011111111 11111111111   1223333566655 44


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHH
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA  263 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  263 (405)
                      ...|.|.||.|...|..++.++|++.|.+++.+|.+|++|||.|+.++..  +.++.|+..++. ++.....|.+|+-.+
T Consensus       195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~--~~~elL~~~ga~-~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQE--DACELLVEHGAD-MDAKTKMGETPLDVA  271 (527)
T ss_pred             ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhH--hHHHHHHHhhcc-cchhhhcCCCCccch
Confidence            44599999999999999999999999999999999999999999999998  899977777766 677888899998887


Q ss_pred             HHc
Q 040751          264 AYH  266 (405)
Q Consensus       264 ~~~  266 (405)
                      ...
T Consensus       272 dee  274 (527)
T KOG0505|consen  272 DEE  274 (527)
T ss_pred             hhh
Confidence            653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=150.45  Aligned_cols=142  Identities=13%  Similarity=0.171  Sum_probs=121.6

Q ss_pred             cccccccCCCChHHHHHHHhCcH----HHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHH
Q 040751           93 SLLLQVNAKGDTPLHVAAKFGHS----GIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDV  168 (405)
Q Consensus        93 ~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  168 (405)
                      .++...+.++.++||.|++.|+.    +++++|++.|..                  ++..|..|+||||+|+..|+.+.
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~------------------~~~~d~~g~t~Lh~Aa~~g~~~~   72 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL------------------LHRYDHHGRQCTHMVAWYDRANA   72 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh------------------hhccCCCCCcHHHHHHHhCccCH
Confidence            34556778889999999999998    666677777765                  45788899999999999988654


Q ss_pred             ---HHHHHhcCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHH
Q 040751          169 ---VKILTKEDPDYRYSAN-NDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       169 ---~~~Ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~  243 (405)
                         +++|++.|++++ ..+ ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.  +++++|+.
T Consensus        73 ~~~i~~Ll~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~--~iv~~Ll~  149 (166)
T PHA02743         73 VMKIELLVNMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDR--RMMEILRA  149 (166)
T ss_pred             HHHHHHHHHcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCH--HHHHHHHH
Confidence               899999999998 565 589999999999999999999995 8999999999999999999999999  99999998


Q ss_pred             hhhhhhhhcccCC
Q 040751          244 KKENLIKETDQYG  256 (405)
Q Consensus       244 ~~~~~~~~~~~~~  256 (405)
                      .+.+ ++.++..|
T Consensus       150 ~ga~-~~~~~~~~  161 (166)
T PHA02743        150 NGAV-CDDPLSIG  161 (166)
T ss_pred             cCCC-CCCcccCC
Confidence            8765 55555544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.8e-20  Score=160.66  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=128.4

Q ss_pred             cccccCCCCh-HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhc----cCCCchHhHHHHhCCCHHHH
Q 040751           95 LLQVNAKGDT-PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT----NNEKNTALHEAVCHKNVDVV  169 (405)
Q Consensus        95 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~t~L~~A~~~~~~~~~  169 (405)
                      +..+|..|.| +||.|+..|+.+++++|+++|++++                  .+    +..|.||||+|+..++.+++
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN------------------~~~~~sd~~g~TpLh~Aa~~~~~eiv   86 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPE------------------APFPLSENSKTNPLIYAIDCDNDDAA   86 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCcc------------------ccCcccCCCCCCHHHHHHHcCCHHHH
Confidence            4456777775 5777888899999999999999865                  43    45899999999999999999


Q ss_pred             HHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhh
Q 040751          170 KILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLI  249 (405)
Q Consensus       170 ~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~  249 (405)
                      ++|+++|++++...+..|.||||+|+..++.+++++|+++|++++.++..|.||||.|+..+..  .++..+.  +    
T Consensus        87 klLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~--~~~~~~~--~----  158 (300)
T PHA02884         87 KLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNN--FLAFMIC--D----  158 (300)
T ss_pred             HHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCCh--hHHHHhc--C----
Confidence            9999999999833456799999999999999999999999999999999999999999998777  5553332  1    


Q ss_pred             hhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751          250 KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ  289 (405)
Q Consensus       250 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~  289 (405)
                      ...+..+.+|.+++.            +.++++.|++++.
T Consensus       159 ~~~~~~~~~~~~~~~------------n~ei~~~Lish~v  186 (300)
T PHA02884        159 NEISNFYKHPKKILI------------NFDILKILVSHFI  186 (300)
T ss_pred             CcccccccChhhhhc------------cHHHHHHHHHHHH
Confidence            124566778887653            3357788887765

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=150.10  Aligned_cols=138  Identities=18%  Similarity=0.238  Sum_probs=117.4

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCC----HHHHH
Q 040751           95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN----VDVVK  170 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~  170 (405)
                      ++..+..|.||||+|+..|+.++++.|+......            .....++.+|..|.||||+|+..|+    .++++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~   81 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD------------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIID   81 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHH
Confidence            4567889999999999999999999987542100            0011266889999999999999998    58999


Q ss_pred             HHHhcCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751          171 ILTKEDPDYRYSAN-NDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN  247 (405)
Q Consensus       171 ~Ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~  247 (405)
                      +|++.|++++ .++ ..|.||||+|+..++.+++++|+. .|++++..+..|+|||+.|+..++.  ++++.|+.....
T Consensus        82 ~Ll~~gadin-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~--~iv~~L~~~~~~  157 (169)
T PHA02741         82 HLIELGADIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV--AMMQILREIVAT  157 (169)
T ss_pred             HHHHcCCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH--HHHHHHHHHHHH
Confidence            9999999998 556 489999999999999999999997 5999999999999999999999998  999999876543

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=150.28  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=117.7

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHH--hCCcccccccCCCChHHHHHHHhCc----HHHHHHHHHccCCCCCc
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILE--KCPSLLLQVNAKGDTPLHVAAKFGH----SGIVTFLVERAKLPQHE  131 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~  131 (405)
                      ..+..|.||||+|  +..|+.++++.|...+.  ..+..++..|..|.||||+|+..|+    .+++++|+++|++++  
T Consensus        16 ~~~~~g~t~Lh~A--a~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin--   91 (169)
T PHA02741         16 EKNSEGENFFHEA--ARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN--   91 (169)
T ss_pred             ccccCCCCHHHHH--HHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Confidence            4566799999999  99999999999876431  2346678899999999999999999    589999999999854  


Q ss_pred             hhHHhhhhhHHHHHhhhccC-CCchHhHHHHhCCCHHHHHHHHh-cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 040751          132 NEELESGVGAARQMIKMTNN-EKNTALHEAVCHKNVDVVKILTK-EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN  209 (405)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  209 (405)
                                      .++. .|.||||+|+..++.+++++|++ .|++++ ..+..|.||||+|+..++.+++++|++.
T Consensus        92 ----------------~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         92 ----------------AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             ----------------CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence                            6664 89999999999999999999997 588887 7889999999999999999999999998


Q ss_pred             CCCC
Q 040751          210 STSV  213 (405)
Q Consensus       210 g~~~  213 (405)
                      ++..
T Consensus       155 ~~~~  158 (169)
T PHA02741        155 VATS  158 (169)
T ss_pred             HHHh
Confidence            7543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.3e-20  Score=149.11  Aligned_cols=133  Identities=21%  Similarity=0.230  Sum_probs=74.0

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHH---HhCCcccccccCCCChHHHHHHHhCcH---HHHHHHHHccCCCCCc
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEIL---EKCPSLLLQVNAKGDTPLHVAAKFGHS---GIVTFLVERAKLPQHE  131 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~g~t~L~~A~~~g~~---~~v~~Ll~~~~~~~~~  131 (405)
                      ..+.+|.||||+|  +..|+.  .+++....   ...+..+...|..|.||||+|+..|+.   +++++|+++|++.+  
T Consensus        12 ~~d~~g~tpLh~A--~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin--   85 (154)
T PHA02736         12 EPDIEGENILHYL--CRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN--   85 (154)
T ss_pred             hcCCCCCCHHHHH--HHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc--
Confidence            4445566666666  666552  22221100   011112334556666666666666654   34566666666532  


Q ss_pred             hhHHhhhhhHHHHHhhhcc-CCCchHhHHHHhCCCHHHHHHHHhc-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 040751          132 NEELESGVGAARQMIKMTN-NEKNTALHEAVCHKNVDVVKILTKE-DPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN  209 (405)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  209 (405)
                                      .++ ..|.||||+|+..++.+++++|+.+ |++++ ..+..|.||||+|+..|+.+++++|+++
T Consensus        86 ----------------~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         86 ----------------GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             ----------------ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence                            444 3566666666666666666666653 55655 5566666666666666666666666666


Q ss_pred             CCCC
Q 040751          210 STSV  213 (405)
Q Consensus       210 g~~~  213 (405)
                      |++.
T Consensus       149 ga~~  152 (154)
T PHA02736        149 GAQC  152 (154)
T ss_pred             CCCC
Confidence            6554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=8.8e-20  Score=144.38  Aligned_cols=138  Identities=17%  Similarity=0.193  Sum_probs=112.4

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCH---HHHH
Q 040751           94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNV---DVVK  170 (405)
Q Consensus        94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~  170 (405)
                      .....|..|.||||+|+..|+.  ++.+..++....           ..+..+...|..|.||||+|+..|+.   ++++
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~-----------~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~   75 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISD-----------ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLK   75 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcc-----------hhHHHHHHhcCCCCEEEEeecccCchhHHHHHH
Confidence            3456788999999999999983  444443332111           01222456788999999999999986   4689


Q ss_pred             HHHhcCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751          171 ILTKEDPDYRYSAN-NDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN  247 (405)
Q Consensus       171 ~Ll~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~  247 (405)
                      +|++.|++++ .++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||+|+..+..  ++++.|+..+.+
T Consensus        76 ~Ll~~gadin-~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~--~i~~~Ll~~ga~  151 (154)
T PHA02736         76 LLMEWGADIN-GKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA--KMMNILRAKGAQ  151 (154)
T ss_pred             HHHHcCCCcc-ccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH--HHHHHHHHcCCC
Confidence            9999999998 565 589999999999999999999998 4999999999999999999999999  999999887644

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=3.4e-19  Score=152.81  Aligned_cols=157  Identities=18%  Similarity=0.132  Sum_probs=127.6

Q ss_pred             hhhccCCCch-HhHHHHhCCCHHHHHHHHhcCCCCccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCC
Q 040751          146 IKMTNNEKNT-ALHEAVCHKNVDVVKILTKEDPDYRYS---ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE-GPNG  220 (405)
Q Consensus       146 ~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~~~~~~~~---~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~-~~~~  220 (405)
                      +..+|..|.| +|+.|+..|+.+++++|+++|++++..   .+..|.||||+|+..++.+++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3456666665 567778889999999999999999832   1468999999999999999999999999999986 4679


Q ss_pred             CcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCC
Q 040751          221 KTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK  300 (405)
Q Consensus       221 ~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g  300 (405)
                      .||||.|+..+..  ++++.|+..+.+ ++.++..|.|||++|+..+..         +++..+...+       .+..+
T Consensus       105 ~TpLh~Aa~~~~~--eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~---------~~~~~~~~~~-------~~~~~  165 (300)
T PHA02884        105 ITPLYISVLHGCL--KCLEILLSYGAD-INIQTNDMVTPIELALMICNN---------FLAFMICDNE-------ISNFY  165 (300)
T ss_pred             CCHHHHHHHcCCH--HHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCCh---------hHHHHhcCCc-------ccccc
Confidence            9999999999999  999999998876 788999999999999987743         3443333221       12366


Q ss_pred             ccHHHHHHhcCCHHHHHHHHhcCC
Q 040751          301 MTALHLAAGQGNAEIVDAIISKNP  324 (405)
Q Consensus       301 ~t~l~~A~~~~~~~~v~~Ll~~~~  324 (405)
                      .+|.+++   ++.+++++|++++.
T Consensus       166 ~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        166 KHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             cChhhhh---ccHHHHHHHHHHHH
Confidence            7888875   47899999999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=3.4e-19  Score=133.36  Aligned_cols=144  Identities=22%  Similarity=0.179  Sum_probs=129.7

Q ss_pred             HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC
Q 040751          105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN  184 (405)
Q Consensus       105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  184 (405)
                      -+..|+..+....|+.||+..++.                 ++.+|.+|+||||-|+..|+.++++.|+..|++.. .+.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~-----------------vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T  127 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANH-----------------VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKT  127 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccc-----------------ccccccccccHHHHHHhcCchHHHHHHHHccCCcc-ccc
Confidence            467899999999999999988765                 78999999999999999999999999999999998 788


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHH
Q 040751          185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA  264 (405)
Q Consensus       185 ~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~  264 (405)
                      ..|+||||.||.-.+.+++..|+++|+|++.......||||.|+...+. ...+.+|+.........++..+.||+.+|-
T Consensus       128 ~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~-r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  128 NEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNS-RDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             ccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccch-HHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            8999999999999999999999999999999999999999999987665 266777777766667778888999999998


Q ss_pred             HcC
Q 040751          265 YHG  267 (405)
Q Consensus       265 ~~~  267 (405)
                      +.+
T Consensus       207 RT~  209 (228)
T KOG0512|consen  207 RTS  209 (228)
T ss_pred             Hhh
Confidence            876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.5e-18  Score=129.85  Aligned_cols=142  Identities=24%  Similarity=0.209  Sum_probs=122.3

Q ss_pred             hhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHH
Q 040751           66 ILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM  145 (405)
Q Consensus        66 ~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  145 (405)
                      .+-+|  +..+....++.|++   .....++..|.+|+||||-|+++|+.++|+.|+..|+++.                
T Consensus        66 l~lwa--ae~nrl~eV~~lL~---e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~----------------  124 (228)
T KOG0512|consen   66 LLLWA--AEKNRLTEVQRLLS---EKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE----------------  124 (228)
T ss_pred             HHHHH--HhhccHHHHHHHHH---hccccccccccccccHHHHHHhcCchHHHHHHHHccCCcc----------------
Confidence            45567  77777777777654   5778899999999999999999999999999999999964                


Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC-HHHHHHHH-HcCCCCcccCCCCCcH
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRS-SDMVLALL-ENSTSVSHEGPNGKTA  223 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~-~~~v~~Ll-~~g~~~~~~~~~~~t~  223 (405)
                        .+...|+||||.||+.++++++-+|+++|++++ .......||||+|+...+ ...+.+|+ ..+..+-..+..+.||
T Consensus       125 --a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta  201 (228)
T KOG0512|consen  125 --AKTNEGWTPLHSACKWNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETA  201 (228)
T ss_pred             --cccccCccchhhhhcccchhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchH
Confidence              888899999999999999999999999999999 788888999999998765 44566665 4567888888899999


Q ss_pred             HHHHHhcC
Q 040751          224 LHAAAMKF  231 (405)
Q Consensus       224 L~~a~~~~  231 (405)
                      +.+|-+.+
T Consensus       202 ~~iARRT~  209 (228)
T KOG0512|consen  202 FDIARRTS  209 (228)
T ss_pred             HHHHHHhh
Confidence            99988763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.77  E-value=5.4e-18  Score=156.45  Aligned_cols=207  Identities=19%  Similarity=0.218  Sum_probs=162.8

Q ss_pred             HHHHHHhhcCCCchhhhhHHHH---------HHHhhhhccccchhhHhhh-hhhhhcccHHHHHHHHHhCCccccc----
Q 040751           32 PKFFKAAADGNVEPFKDMAREK---------IESLLTAKTRNTILHINII-SKERENVSTEFVEEILEKCPSLLLQ----   97 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~---------~~~~~~~~~g~~~L~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~~----   97 (405)
                      ++++.|...++++.+..++..+         -+.+.+...|.|.||.|+. ...++.++++.|++..   +..++.    
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~---p~lind~~~~  179 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIF---PKLINDIYTS  179 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHh---HHHhhhhhhh
Confidence            6799999999999888887655         2222445679999999952 2455667777777753   334433    


Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhH---HhhhhhHHHHHhhh--ccCCCchHhHHHHhCCCHHHHHHH
Q 040751           98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE---LESGVGAARQMIKM--TNNEKNTALHEAVCHKNVDVVKIL  172 (405)
Q Consensus        98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~L  172 (405)
                      -...|.||||+|+.+.+.++|++|++.|++.+.....   ..+..+..+...+.  .-..|..||..|+..++.|++++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            2456999999999999999999999999997633211   00000001111111  134689999999999999999999


Q ss_pred             HhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHhcCCccHHHHHHHHHh
Q 040751          173 TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS--VSHEGPNGKTALHAAAMKFDLVDTALRKLLEK  244 (405)
Q Consensus       173 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~  244 (405)
                      +++|++++ .+|..|+|.||.++..-..++...++++|++  ...+|..|.|||..|++-|+.  ++.+.+++.
T Consensus       260 l~~gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~--emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK--EMFQHILER  330 (782)
T ss_pred             HhcCCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH--HHHHHHHHh
Confidence            99999998 8999999999999999899999999999999  889999999999999999999  999999998

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=3.3e-18  Score=138.73  Aligned_cols=118  Identities=31%  Similarity=0.356  Sum_probs=85.3

Q ss_pred             CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHH
Q 040751           91 CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK  170 (405)
Q Consensus        91 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  170 (405)
                      ...+++.-|..|.+|||.|++.|+..+|+.|+..|+..                  +..+....||||.|+..|+.++++
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgarv------------------n~tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV------------------NSTNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhccccc------------------ccccCCCCcchhhhhhcccHHHHH
Confidence            34556666777777777777777777777777777763                  366666667777777777777777


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751          171 ILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA  227 (405)
Q Consensus       171 ~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  227 (405)
                      .|++..++++ ..++.|.|||||||.-|.-.+++-|+..|+.++..++.|.|||..|
T Consensus        85 kll~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   85 KLLSRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            7777777776 6677777777777777777777777777777777777777777655

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1.8e-17  Score=118.12  Aligned_cols=89  Identities=36%  Similarity=0.512  Sum_probs=78.6

Q ss_pred             HHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCC
Q 040751          106 LHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN  185 (405)
Q Consensus       106 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  185 (405)
                      ||+|+..|+.+++++|++.+.+.+                  .    |.||||+|+..|+.+++++|+++|++++ ..+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~------------------~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN------------------L----GNTALHYAAENGNLEIVKLLLENGADIN-SQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT------------------S----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC------------------C----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCC
Confidence            789999999999999999887643                  2    8899999999999999999999999987 7788


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 040751          186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEG  217 (405)
Q Consensus       186 ~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~  217 (405)
                      .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=1.1e-16  Score=122.32  Aligned_cols=124  Identities=34%  Similarity=0.515  Sum_probs=109.5

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751           98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP  177 (405)
Q Consensus        98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  177 (405)
                      .+..|.||||+|+..|+.+++++|++++...                  +..+..|.+|+|+|+..++.+++++|++.++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~------------------~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~   64 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV------------------NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA   64 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            4577999999999999999999999999873                  2677889999999999999999999999998


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHH
Q 040751          178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLL  242 (405)
Q Consensus       178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll  242 (405)
                      .++ ..+..+.||+|+|+..++.+++++|+++|.+++..+..+.||++.|...+..  +.+++|+
T Consensus        65 ~~~-~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~Ll  126 (126)
T cd00204          65 DVN-ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL--EVVKLLL  126 (126)
T ss_pred             Ccc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCH--HHHHHhC
Confidence            766 5678899999999999999999999999988888888999999999999887  8887763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.69  E-value=3.3e-17  Score=132.94  Aligned_cols=156  Identities=23%  Similarity=0.214  Sum_probs=129.3

Q ss_pred             HHHHhhcCCCchhhhhHHHH-HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHh
Q 040751           34 FFKAAADGNVEPFKDMAREK-IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKF  112 (405)
Q Consensus        34 l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~  112 (405)
                      ++.-++.||.-.|+..++.. -+.+..|..|++|||+|  ++.|+..+++.|+.    .+..++..+.-..||||+|+..
T Consensus         4 if~wcregna~qvrlwld~tehdln~gddhgfsplhwa--akegh~aivemll~----rgarvn~tnmgddtplhlaaah   77 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWA--AKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAH   77 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccccCcchhhhh--hhcccHHHHHHHHh----cccccccccCCCCcchhhhhhc
Confidence            55668899988888888654 44447777899999999  99999999999987    4788899998899999999999


Q ss_pred             CcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHH
Q 040751          113 GHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY  192 (405)
Q Consensus       113 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~  192 (405)
                      |+-++|+.|++..++.                  +..+.-|.|||||||..|...+.+-|+..|+.++ ..++.|.|||.
T Consensus        78 ghrdivqkll~~kadv------------------navnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpld  138 (448)
T KOG0195|consen   78 GHRDIVQKLLSRKADV------------------NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLD  138 (448)
T ss_pred             ccHHHHHHHHHHhccc------------------chhhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchh
Confidence            9999999999999884                  5889999999999999999999999999999998 78899999998


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCc
Q 040751          193 MAAESRSSDMVLALLENSTSVS  214 (405)
Q Consensus       193 ~a~~~~~~~~v~~Ll~~g~~~~  214 (405)
                      .|-..-...+.+.--++|-.++
T Consensus       139 kakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  139 KAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhchHHHHHHHHHHHHhCCCCC
Confidence            8754422223333334554444

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=6.5e-16  Score=110.00  Aligned_cols=87  Identities=34%  Similarity=0.481  Sum_probs=79.1

Q ss_pred             hHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHH
Q 040751          157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT  236 (405)
Q Consensus       157 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~  236 (405)
                      ||+|++.|+.+++++|++.+.+++.     |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNL--E   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH--H
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCH--H
Confidence            7999999999999999999988762     88999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHHHhhhhhhhh
Q 040751          237 ALRKLLEKKENLIKE  251 (405)
Q Consensus       237 ~v~~Ll~~~~~~~~~  251 (405)
                      ++++|++.+.+ ++.
T Consensus        74 ~~~~Ll~~g~~-~~~   87 (89)
T PF12796_consen   74 IVKLLLEHGAD-VNI   87 (89)
T ss_dssp             HHHHHHHTTT--TTS
T ss_pred             HHHHHHHcCCC-CCC
Confidence            99999988654 443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1e-15  Score=141.57  Aligned_cols=200  Identities=22%  Similarity=0.228  Sum_probs=158.8

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcCCC
Q 040751          102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKEDPD  178 (405)
Q Consensus       102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~  178 (405)
                      .+.++..|...+..+....|...+...         ........++.+..-|.|.||.|...   ++.++++.|++.-+.
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~---------k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~  171 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKS---------KYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPK  171 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhh---------hhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHH
Confidence            347888888888888888887665321         11112223566778899999999973   445899999987554


Q ss_pred             Ccc----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-----------------------CCCCcHHHHHHhcC
Q 040751          179 YRY----SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-----------------------PNGKTALHAAAMKF  231 (405)
Q Consensus       179 ~~~----~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-----------------------~~~~t~L~~a~~~~  231 (405)
                      ..+    .....|.||||.|+.+.+.++|+.|++.|+|++.+.                       ..|+.||.+|+..+
T Consensus       172 lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  172 LINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             HhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC
Confidence            332    234589999999999999999999999999988631                       13789999999999


Q ss_pred             CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcC
Q 040751          232 DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG  311 (405)
Q Consensus       232 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~  311 (405)
                      ..  ++++.|++.+++ ++.+|..|.|.||..+..-         ..++..++++.++.......+..|.|||.+|++-|
T Consensus       252 q~--eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~---------~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  252 QP--EIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHF---------VTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             CH--HHHHHHHhcCCC-CCccccCCChHHHHHHHHH---------HHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            99  999999997766 8999999999999998763         44689999999988333344568999999999999


Q ss_pred             CHHHHHHHHhc
Q 040751          312 NAEIVDAIISK  322 (405)
Q Consensus       312 ~~~~v~~Ll~~  322 (405)
                      +.++++.+++.
T Consensus       320 k~emf~~ile~  330 (782)
T KOG3676|consen  320 KKEMFQHILER  330 (782)
T ss_pred             hHHHHHHHHHh
Confidence            99999999997

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=5.4e-16  Score=103.40  Aligned_cols=91  Identities=20%  Similarity=0.168  Sum_probs=83.2

Q ss_pred             HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK  111 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  111 (405)
                      ..+.+++++|.+|.|+..+..|.+.+..- .|++|||||  +..|+.+++++|+.+    +..++.+|+.|.|||..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyA--AD~GQl~ilefli~i----GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYA--ADYGQLSILEFLISI----GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHh--hhcchHHHHHHHHHh----ccccCCccccCCcHHHHHHH
Confidence            45889999999999999999997766544 599999999  999999999999885    88899999999999999999


Q ss_pred             hCcHHHHHHHHHccCCCC
Q 040751          112 FGHSGIVTFLVERAKLPQ  129 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~  129 (405)
                      .|+..+|++|+++|++..
T Consensus        77 EGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             HhhHHHHHHHHHcCcccc
Confidence            999999999999999854

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2e-15  Score=115.28  Aligned_cols=123  Identities=33%  Similarity=0.452  Sum_probs=109.1

Q ss_pred             hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhh
Q 040751           60 AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV  139 (405)
Q Consensus        60 ~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  139 (405)
                      +..|.||||+|  +..++.+++++|++    .+...+..+..|.||||.|+..++.+++++|++++...           
T Consensus         4 ~~~g~t~l~~a--~~~~~~~~i~~li~----~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-----------   66 (126)
T cd00204           4 DEDGRTPLHLA--ASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-----------   66 (126)
T ss_pred             CcCCCCHHHHH--HHcCcHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-----------
Confidence            45699999999  99999999999887    34445778889999999999999999999999999753           


Q ss_pred             hHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040751          140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL  207 (405)
Q Consensus       140 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll  207 (405)
                             +..+..|.||+|+|+..++.+++++|++.+.+.. ..+..+.||+++|...++.+++++|+
T Consensus        67 -------~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          67 -------NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                   3677889999999999999999999999998877 67789999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=1.1e-14  Score=97.29  Aligned_cols=101  Identities=21%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC
Q 040751          105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN  184 (405)
Q Consensus       105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  184 (405)
                      -+.+++++|..+-|+..+..|-+.+                  . -..|++|||+|+.+|..+++.+|+..|++++ .+|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn------------------~-~~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kD   64 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVN------------------E-IYGGRTPLHYAADYGQLSILEFLISIGANIQ-DKD   64 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHH------------------H-HhCCcccchHhhhcchHHHHHHHHHhccccC-Ccc
Confidence            4567889999999999998885532                  2 2378999999999999999999999999998 889


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751          185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH  225 (405)
Q Consensus       185 ~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~  225 (405)
                      +.|.|||-.|+..|+.++|++|++.|++-.....+|.+.+.
T Consensus        65 KygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   65 KYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             ccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            99999999999999999999999999998888888877654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=2.8e-13  Score=115.28  Aligned_cols=133  Identities=31%  Similarity=0.394  Sum_probs=121.6

Q ss_pred             cccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCC-----HH
Q 040751           93 SLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN-----VD  167 (405)
Q Consensus        93 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~  167 (405)
                      ......+..+.++++.++..+..+++++++..|.+++                  ..+..|.||||+|+..++     .+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~~g~t~l~~a~~~~~~~~~~~~  125 (235)
T COG0666          64 RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVN------------------AKDADGDTPLHLAALNGNPPEGNIE  125 (235)
T ss_pred             cccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcc------------------cccCCCCcHHHHHHhcCCcccchHH
Confidence            3345566678999999999999999999999999854                  889999999999999999     99


Q ss_pred             HHHHHHhcCC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          168 VVKILTKEDP--DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       168 ~~~~Ll~~~~--~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      +++.|++.|+  +.....+..|.||||+|+..|+.++++.|++.|++++.++..|.|+++.|+..+..  +.++.++...
T Consensus       126 ~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~l~~~~  203 (235)
T COG0666         126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRI--ELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchH--HHHHHHHhcC
Confidence            9999999999  56657799999999999999999999999999999999999999999999999999  8998888754

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=5e-14  Score=89.60  Aligned_cols=49  Identities=29%  Similarity=0.384  Sum_probs=32.4

Q ss_pred             ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhh
Q 040751          347 LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHIL  396 (405)
Q Consensus       347 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a  396 (405)
                      +++.+|..|.||||+|+..|+.+++++|++. |+|++.+|..|+||+|+|
T Consensus         8 ~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~-g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    8 DVNAQDKYGNTPLHWAARYGHSEVVRLLLQN-GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TT---TTS--HHHHHHHHT-HHHHHHHHHC-T--TT---TTS--HHHH-
T ss_pred             CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC-cCCCCCCcCCCCCHHHhC
Confidence            3788899999999999999999999999965 999999999999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.40  E-value=3.2e-12  Score=104.17  Aligned_cols=119  Identities=20%  Similarity=0.212  Sum_probs=109.7

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      .+||.-++..|..+-+..|++-...                  ++..|..|.++|..|+..|+.+++++|++.|+++|..
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~------------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~   74 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQ------------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK   74 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhh------------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc
Confidence            5799999999999999999986443                  5588999999999999999999999999999999988


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHH
Q 040751          183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKL  241 (405)
Q Consensus       183 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~L  241 (405)
                      ....+.||||+|+.+|+.++.+.|++.|+.+...+.-|+|+-.+|+.-|+.  ++|..+
T Consensus        75 qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H--~CV~iI  131 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHH--ECVAII  131 (396)
T ss_pred             cccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcch--HHHHHH
Confidence            888999999999999999999999999999999999999999999999888  777655

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=9.6e-13  Score=83.32  Aligned_cols=54  Identities=39%  Similarity=0.534  Sum_probs=45.0

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751          102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus       102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      |.||||+|+..|+.+++++|+++|.++                  +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di------------------n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI------------------NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT------------------T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC------------------CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999885                  488999999999999999999999986

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.39  E-value=4.5e-13  Score=85.15  Aligned_cols=55  Identities=33%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             HHhcC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751          172 LTKED-PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA  227 (405)
Q Consensus       172 Ll~~~-~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  227 (405)
                      |+++| .+++ ..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n-~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVN-AQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCc-CcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 5555 7899999999999999999999999999999999999999999986

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.39  E-value=2.5e-11  Score=103.19  Aligned_cols=128  Identities=33%  Similarity=0.473  Sum_probs=88.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCC-----ccHHHHHHHHHhhh--hhhhhcccC
Q 040751          183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFD-----LVDTALRKLLEKKE--NLIKETDQY  255 (405)
Q Consensus       183 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~-----~~~~~v~~Ll~~~~--~~~~~~~~~  255 (405)
                      .+..+.++++.++..+..+++++++..|++++.++..|.||||+|+..++     .  ++++.|+..+.  .....++..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~--~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI--EVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchH--HHHHHHHHcCCCCCCccccCCC
Confidence            34456677777777777777777777777777777777777777777766     6  67777777666  445556677


Q ss_pred             CCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcC
Q 040751          256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN  323 (405)
Q Consensus       256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  323 (405)
                      |.||||+|+..|         +.++++.|++.+.+. ... +..|.|+++.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~---------~~~~~~~ll~~~~~~-~~~-~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNG---------DADIVELLLEAGADP-NSR-NSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcC---------chHHHHHHHhcCCCC-ccc-ccCCCcchhhhcccchHHHHHHHHhcC
Confidence            777777777766         335666677666655 222 237788888888888888888888765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=2.8e-12  Score=124.33  Aligned_cols=106  Identities=25%  Similarity=0.288  Sum_probs=95.6

Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      +.|+.|+..|+.+.++.|+++|++++                  ..|..|.||||+|+..|+.+++++|++.|++++ ..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin------------------~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~  144 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN------------------CRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LL  144 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC------------------CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CC
Confidence            46899999999999999999999854                  788999999999999999999999999999998 78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-------CCCCcccCCCCCcHHHHHH
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLEN-------STSVSHEGPNGKTALHAAA  228 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~-------g~~~~~~~~~~~t~L~~a~  228 (405)
                      +..|.||||+|+..|+.+++++|+++       |++.+..+..|.+|+..+.
T Consensus       145 d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        145 DKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999999999999999999       7888877777777665443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1.2e-12  Score=82.81  Aligned_cols=54  Identities=37%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             CchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 040751          153 KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL  207 (405)
Q Consensus       153 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll  207 (405)
                      |.||||+|+..|+.+++++|++.|.+++ ..|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4566666666666666666666666665 44666666666666666666666664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=8.8e-12  Score=109.82  Aligned_cols=117  Identities=27%  Similarity=0.281  Sum_probs=93.6

Q ss_pred             HHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCC
Q 040751          106 LHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN  185 (405)
Q Consensus       106 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  185 (405)
                      |.-|+..|.+++|+..+....++.                  ..+..|.|+||-|+..|+.+||++|++.|+++| ..|.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpS------------------qpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DS  614 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPS------------------QPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADS  614 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCC------------------CCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccC
Confidence            445788999999999998877764                  667889999999999999999999999999998 8899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHH--hcCCccHHHHHHHHH
Q 040751          186 DGKTPLYMAAESRSSDMVLALLENSTSVSHE-GPNGKTALHAAA--MKFDLVDTALRKLLE  243 (405)
Q Consensus       186 ~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~a~--~~~~~~~~~v~~Ll~  243 (405)
                      +|+||||.|+..++..+++.|++.|+-+... -.++.|+...+-  .-|..  .+.++|..
T Consensus       615 dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~--~CsqyL~~  673 (752)
T KOG0515|consen  615 DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYD--QCSQYLYG  673 (752)
T ss_pred             CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHH--HHHHHHHH
Confidence            9999999999999999999999999766432 345667655443  23444  67777754

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=6.8e-12  Score=110.49  Aligned_cols=114  Identities=25%  Similarity=0.142  Sum_probs=99.5

Q ss_pred             hhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCC
Q 040751           73 SKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNE  152 (405)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (405)
                      +..|..++++-++.-    -.+....+..|.|+||-|+..||.+||++||+.|++.                  +..|.+
T Consensus       558 aLeGEldlVq~~i~e----v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV------------------Na~DSd  615 (752)
T KOG0515|consen  558 ALEGELDLVQRIIYE----VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV------------------NAADSD  615 (752)
T ss_pred             hhcchHHHHHHHHHh----hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc------------------cCccCC
Confidence            788998888887662    4556788999999999999999999999999999995                  599999


Q ss_pred             CchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHH--HcCCHHHHHHHHH
Q 040751          153 KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAA--ESRSSDMVLALLE  208 (405)
Q Consensus       153 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~v~~Ll~  208 (405)
                      |+||||.|+.+++..+++.|++.|+-+....-.++.|+..-|-  ..|...|.++|-.
T Consensus       616 GWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  616 GWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999999999887666678889887764  4688899999864

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=2e-11  Score=118.49  Aligned_cols=106  Identities=23%  Similarity=0.208  Sum_probs=92.7

Q ss_pred             hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCcc
Q 040751          155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV  234 (405)
Q Consensus       155 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~  234 (405)
                      ..|+.|+..|+.+.++.|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++. 
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~-  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR-  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH-
Confidence            45889999999999999999999998 7899999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHh-------hhhhhhhcccCCCCHHHHHH
Q 040751          235 DTALRKLLEK-------KENLIKETDQYGWTPIHYAA  264 (405)
Q Consensus       235 ~~~v~~Ll~~-------~~~~~~~~~~~~~t~l~~a~  264 (405)
                       ++++.|+..       +.. .+..+..|.+|+..+.
T Consensus       162 -~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 -EVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             -HHHHHHHhCCCcccccCCC-CCccccCCCCccchhh
Confidence             999999987       322 4445555666655443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.27  E-value=2.4e-11  Score=99.22  Aligned_cols=91  Identities=13%  Similarity=0.115  Sum_probs=43.6

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc-ccCCCChHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQ-VNAKGDTPLHVA  109 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~t~L~~A  109 (405)
                      .++|+.++.+||.+....||..--+.+..|.+|.|+|..|  +..|+.+.++.|+++    +.+++. .+..++||||+|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahA--aykGnl~~v~lll~~----gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHA--AYKGNLTLVELLLEL----GADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHH--HhcCcHHHHHHHHHh----CCCcCcccccccccHHHHH
Confidence            3456666666666666666655333444444444444444  444444444444442    333322 233344444444


Q ss_pred             HHhCcHHHHHHHHHccCC
Q 040751          110 AKFGHSGIVTFLVERAKL  127 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~  127 (405)
                      +.+|+.++...|++.|+.
T Consensus        87 ALSGn~dvcrllldaGa~  104 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGAR  104 (396)
T ss_pred             HHcCCchHHHHHHhccCc
Confidence            444444444444444444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.90  E-value=1.8e-09  Score=58.21  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHhCCcHHHHHHHhcccccccc
Q 040751          354 MGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA  384 (405)
Q Consensus       354 ~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~  384 (405)
                      +|+||||+|++.|+.+++++||++ |+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~-gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH-GADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc-CCCCCC
Confidence            489999999999999999999998 999984

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.84  E-value=3.5e-09  Score=59.01  Aligned_cols=33  Identities=24%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751          354 MGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK  387 (405)
Q Consensus       354 ~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~  387 (405)
                      +|.||||+|+..|+.+++++|+++ |++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKH-GADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHT-TSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHC-cCCCCCCCC
Confidence            489999999999999999999997 999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.79  E-value=5.2e-09  Score=97.59  Aligned_cols=84  Identities=21%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH  225 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~  225 (405)
                      .+..|..|+|+||+++..+..++++||+++|++++-...+.|.||||.|+.+|+++++-.|+++|......|++|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            67889999999999999999999999999999998666678999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 040751          226 AAAM  229 (405)
Q Consensus       226 ~a~~  229 (405)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8887

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.78  E-value=2.1e-08  Score=89.66  Aligned_cols=102  Identities=27%  Similarity=0.437  Sum_probs=88.3

Q ss_pred             CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHH
Q 040751           91 CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK  170 (405)
Q Consensus        91 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  170 (405)
                      .+..+...+.+.+|.||+|++.|+-++|+|++++|..                +++++.+..|.|+||.|+..++..+.+
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~----------------elld~~de~get~lhkaa~~~~r~vc~  951 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS----------------ELLDMADETGETALHKAACQRNRAVCQ  951 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH----------------HHHHHHhhhhhHHHHHHHHhcchHHHH
Confidence            3455667788889999999999999999999999875                347888899999999999999999999


Q ss_pred             HHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 040751          171 ILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN  209 (405)
Q Consensus       171 ~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  209 (405)
                      +|++.|+... ..|..|.||-..|-+.|+.++.-+|-.+
T Consensus       952 ~lvdagasl~-ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  952 LLVDAGASLR-KTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHhcchhhe-ecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999987 7888999999999999999999888754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.76  E-value=1.3e-08  Score=54.83  Aligned_cols=29  Identities=38%  Similarity=0.589  Sum_probs=22.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 040751          186 DGKTPLYMAAESRSSDMVLALLENSTSVS  214 (405)
Q Consensus       186 ~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~  214 (405)
                      +|+||||+|+..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888888777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.70  E-value=3.2e-08  Score=55.08  Aligned_cols=32  Identities=34%  Similarity=0.544  Sum_probs=24.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 040751          186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEG  217 (405)
Q Consensus       186 ~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~  217 (405)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            46778888888888888888888887777665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.68  E-value=1.9e-08  Score=93.99  Aligned_cols=94  Identities=24%  Similarity=0.308  Sum_probs=83.1

Q ss_pred             HHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHH
Q 040751          239 RKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDA  318 (405)
Q Consensus       239 ~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~  318 (405)
                      .++........+.+|..|+|+||+++..+         ..+++++|+++|.++ +.++.+.|+||||-|+..|+++++-+
T Consensus        35 ~F~~k~c~n~anikD~~GR~alH~~~S~~---------k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   35 GFSEKSCQNLANIKDRYGRTALHIAVSEN---------KNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             HHHHHhhhhhhhHHHhhccceeeeeeccc---------hhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHH
Confidence            34444455667889999999999999987         557999999999988 77888899999999999999999999


Q ss_pred             HHhcCCcccccccCCCChHHHHHHH
Q 040751          319 IISKNPECYELVDNRGWNFLHYAVV  343 (405)
Q Consensus       319 Ll~~~~~~~~~~~~~g~t~l~~a~~  343 (405)
                      |+++|... ..+|++|.+||+..++
T Consensus       105 LL~~g~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  105 LLSKGRSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHhcCCce-EEecccCCCHHHHHhh
Confidence            99999876 8899999999999886

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.66  E-value=1.1e-08  Score=89.45  Aligned_cols=139  Identities=21%  Similarity=0.207  Sum_probs=96.3

Q ss_pred             CCCCCCchhhhhh-cCCHHHHHHhhcCCCchhhhhHHHHHHHh----hhhccccchhhHhhhhhhhhcccHHHHHHHHHh
Q 040751           16 APLLDSTGEISQS-QMDPKFFKAAADGNVEPFKDMAREKIESL----LTAKTRNTILHINIISKERENVSTEFVEEILEK   90 (405)
Q Consensus        16 ~~~~~~~~~~~~~-~~~~~l~~A~~~g~~~~v~~ll~~~~~~~----~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~   90 (405)
                      .|.+++.+++-.+ .+...|..-.-..|.|.+..--++.+++.    .....+..++.+|  +..|+...++-+.-    
T Consensus       454 SPpLDklGNs~rGv~Fc~~Lvs~fNFHNYD~L~h~~~~K~DPRR~~~~~~~~~~i~~~~a--a~~GD~~alrRf~l----  527 (622)
T KOG0506|consen  454 SPPLDKLGNSCRGVAFCRQLVSKFNFHNYDSLRHPDNRKIDPRREGGPRENDTVINVMYA--AKNGDLSALRRFAL----  527 (622)
T ss_pred             cCCchhhcCccccHHHHHHHHHHhcccCchhhcccccccCCcccccCcccccchhhhhhh--hhcCCHHHHHHHHH----
Confidence            4555544443322 24445555555566777666665555555    2223456678888  88888777665433    


Q ss_pred             CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHH
Q 040751           91 CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK  170 (405)
Q Consensus        91 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  170 (405)
                      .+.++...|.+.+|+||+|+..|+.+++|+|++.-...                 .+.+|.+|+|||..|...++.++++
T Consensus       528 ~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-----------------~~~kDRw~rtPlDdA~~F~h~~v~k  590 (622)
T KOG0506|consen  528 QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD-----------------PDPKDRWGRTPLDDAKHFKHKEVVK  590 (622)
T ss_pred             hcccccccccccchhheeecccCceeHHHHHHHHHcCC-----------------CChhhccCCCcchHhHhcCcHHHHH
Confidence            36778888999999999999999999999998864322                 3467889999999999999999998


Q ss_pred             HHHhcCC
Q 040751          171 ILTKEDP  177 (405)
Q Consensus       171 ~Ll~~~~  177 (405)
                      +|-+...
T Consensus       591 ~L~~~~~  597 (622)
T KOG0506|consen  591 LLEEAQY  597 (622)
T ss_pred             HHHHHhc
Confidence            8877543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=3.8e-08  Score=88.12  Aligned_cols=124  Identities=16%  Similarity=0.243  Sum_probs=109.0

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      ....|..|+..+|+-.++.....|-+....+.+..+.||+|  +..|+-++++|+++.  ..+..++..++.|.|+||.|
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a--~~tg~~eivkyildh--~p~elld~~de~get~lhka  941 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYA--AKTGNGEIVKYILDH--GPSELLDMADETGETALHKA  941 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHH--HhcCChHHHHHHHhc--CCHHHHHHHhhhhhHHHHHH
Confidence            34568999999998888888888877778888899999999  999999999999873  33456788899999999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      +..++-.+..+|++.|+.                  +-.+|..|.||-.-|-+.|+.+..-+|-..
T Consensus       942 a~~~~r~vc~~lvdagas------------------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  942 ACQRNRAVCQLLVDAGAS------------------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHhcchHHHHHHHhcchh------------------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999987                  457899999999999999999999999754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.64  E-value=2.6e-08  Score=87.25  Aligned_cols=91  Identities=22%  Similarity=0.285  Sum_probs=83.7

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      -...+++|++.||+..++.+.-.|.+....|.+.+|+||.|  |..|+.+++++|++   .++.+.+.+|..|+|||.-|
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvA--AaEG~v~v~kfl~~---~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVA--AAEGHVEVVKFLLN---ACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheee--cccCceeHHHHHHH---HHcCCCChhhccCCCcchHh
Confidence            34569999999999999999999999999999999999999  99999999999977   47778888999999999999


Q ss_pred             HHhCcHHHHHHHHHcc
Q 040751          110 AKFGHSGIVTFLVERA  125 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~  125 (405)
                      ...++.+++++|-+..
T Consensus       581 ~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhcCcHHHHHHHHHHh
Confidence            9999999999998764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.64  E-value=1.6e-07  Score=82.78  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=86.9

Q ss_pred             hccCCCchH------hHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          148 MTNNEKNTA------LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       148 ~~~~~g~t~------L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                      .+|.+|.+.      ||..++.|+.++.-.|+..|++.|+.....|.||||.|++.|+..-+++|.-+|+|+...|.+|.
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            345555543      89999999999999999999999998899999999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCCccHHHHHHHHHhhh
Q 040751          222 TALHAAAMKFDLVDTALRKLLEKKE  246 (405)
Q Consensus       222 t~L~~a~~~~~~~~~~v~~Ll~~~~  246 (405)
                      ||+.+|-..|+-  ++...|++...
T Consensus       202 tP~~~AR~~gH~--~laeRl~e~~y  224 (669)
T KOG0818|consen  202 TPVDYARQGGHH--ELAERLVEIQY  224 (669)
T ss_pred             cHHHHHHhcCch--HHHHHHHHHHH
Confidence            999999999998  88887776543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.56  E-value=2.4e-07  Score=83.24  Aligned_cols=93  Identities=20%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             HHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCC
Q 040751          106 LHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN  185 (405)
Q Consensus       106 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  185 (405)
                      |.-|+...++..+-+||.+|....              ..-...+.+|.|+||.|++.|++.+.++|+-+|+++. ..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e--------------~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda  692 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREE--------------VNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDA  692 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchh--------------hhccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-eccc
Confidence            445666666667777777765432              0012334556777777777777777777777777765 6677


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751          186 DGKTPLYMAAESRSSDMVLALLENSTSV  213 (405)
Q Consensus       186 ~g~t~L~~a~~~~~~~~v~~Ll~~g~~~  213 (405)
                      .|.|+|.||-+.|..+++..|+++|+..
T Consensus       693 ~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  693 HGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            7777777777777777777777777543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.45  E-value=2.7e-07  Score=82.94  Aligned_cols=93  Identities=14%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHH----HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREK----IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTP  105 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~----~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~  105 (405)
                      +...|..|+...|+..+..||.+|    ++....+.+|+|+||+|  +.-|+..+.++|+-    ++.++...|.+|+|+
T Consensus       624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa--~~~gnVvl~QLLiW----yg~dv~~rda~g~t~  697 (749)
T KOG0705|consen  624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLA--ARKGNVVLAQLLIW----YGVDVMARDAHGRTA  697 (749)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhh--hhhcchhHHHHHHH----hCccceecccCCchh
Confidence            445699999999999999999988    33335666799999999  99999999999987    588899999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHccCCC
Q 040751          106 LHVAAKFGHSGIVTFLVERAKLP  128 (405)
Q Consensus       106 L~~A~~~g~~~~v~~Ll~~~~~~  128 (405)
                      |.||-..|..+++..|+++|+..
T Consensus       698 l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCCc
Confidence            99999999999999999999865

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.41  E-value=1.5e-06  Score=77.88  Aligned_cols=90  Identities=21%  Similarity=0.222  Sum_probs=74.9

Q ss_pred             hHhHHHHhCCCHHHHHHHHhc--CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCC
Q 040751          155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFD  232 (405)
Q Consensus       155 t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~  232 (405)
                      .|+|+++.....+-+..++..  ...+. ..|..|.||||+|+..|+.+.++.|+..|+++..++..|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id-~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVID-RRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceec-cccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            458999888877766654433  33444 678899999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhhhh
Q 040751          233 LVDTALRKLLEKKEN  247 (405)
Q Consensus       233 ~~~~~v~~Ll~~~~~  247 (405)
                      .  .++..++.....
T Consensus       101 ~--q~i~~vlr~~~~  113 (560)
T KOG0522|consen  101 E--QIITEVLRHLKY  113 (560)
T ss_pred             H--HHHHHHHHHhHH
Confidence            8  888888776543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.37  E-value=3.8e-07  Score=80.54  Aligned_cols=91  Identities=20%  Similarity=0.254  Sum_probs=80.8

Q ss_pred             hcCCHHHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHH
Q 040751           28 SQMDPKFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPL  106 (405)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  106 (405)
                      ..+...||..++.|+++..-.||..|++.+ ...+.|.||||.|  ++.|+..-+++|.-    +++++...|..|.||+
T Consensus       131 ~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvA--Ak~Gq~~Q~ElL~v----YGAD~~a~d~~GmtP~  204 (669)
T KOG0818|consen  131 KDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVA--AKAGQILQAELLAV----YGADPGAQDSSGMTPV  204 (669)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHH--HhccchhhhhHHhh----ccCCCCCCCCCCCcHH
Confidence            457788999999999999999999999888 4445699999999  99999888887765    6999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHHc
Q 040751          107 HVAAKFGHSGIVTFLVER  124 (405)
Q Consensus       107 ~~A~~~g~~~~v~~Ll~~  124 (405)
                      -+|-..|+-++.+-|++.
T Consensus       205 ~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  205 DYARQGGHHELAERLVEI  222 (669)
T ss_pred             HHHHhcCchHHHHHHHHH
Confidence            999999998888888763

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.27  E-value=2.5e-06  Score=76.43  Aligned_cols=89  Identities=25%  Similarity=0.268  Sum_probs=73.5

Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      -|+|.++.....+-...++.......                ++..|.-|.||||.|+.-|+.+.++.|+..|+++. .+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~----------------id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~k   84 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLV----------------IDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IK   84 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhce----------------eccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-cc
Confidence            45899888777665555444332222                66889999999999999999999999999999987 78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLEN  209 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~  209 (405)
                      +..|++|||.|+..|+.+++..++.+
T Consensus        85 N~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   85 NNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999888877754

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.22  E-value=4.1e-06  Score=79.51  Aligned_cols=136  Identities=15%  Similarity=0.088  Sum_probs=102.9

Q ss_pred             hcCCHHHHHHhhcCCCchhhhhHHHH----HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCC
Q 040751           28 SQMDPKFFKAAADGNVEPFKDMAREK----IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGD  103 (405)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~v~~ll~~~----~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~  103 (405)
                      ..-+..+..|+.+||.-.|+..++..    .+.+..|.-|.++|+.|  ..+.+.+++++|++.    +...       .
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~ia--i~nenle~~eLLl~~----~~~~-------g   89 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIA--IDNENLELQELLLDT----SSEE-------G   89 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecc--cccccHHHHHHHhcC----cccc-------c
Confidence            33456799999999999999999864    56668888899999999  999999999999772    1111       4


Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      .+|.+|+..|..+.|+.++.+-.........        ...-...-.-+.|||..|+..+++|+++.|+++|+.+....
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~--------~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHFVDAPYLERS--------GDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccchhccc--------cccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            6899999999999999999986543211110        00011223456899999999999999999999998876443


Q ss_pred             C
Q 040751          184 N  184 (405)
Q Consensus       184 ~  184 (405)
                      +
T Consensus       162 ~  162 (822)
T KOG3609|consen  162 D  162 (822)
T ss_pred             c
Confidence            3

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.21  E-value=3.7e-06  Score=79.81  Aligned_cols=123  Identities=16%  Similarity=0.120  Sum_probs=99.4

Q ss_pred             hhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHH
Q 040751           66 ILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM  145 (405)
Q Consensus        66 ~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  145 (405)
                      -...|  +..|+.-.++..++.......+++..|.-|+++|+.|+.+.+.+++++|+++...                  
T Consensus        28 ~fL~a--~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~------------------   87 (822)
T KOG3609|consen   28 GFLLA--HENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE------------------   87 (822)
T ss_pred             HHHHH--HHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc------------------
Confidence            34556  8889988888887755445567888999999999999999999999999998632                  


Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCC---------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY---------RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH  215 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~---------~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~  215 (405)
                        .     ..+|..|+..|..+.++.++.+....         +...-.-+.|||.+|+..+++|+++.|+.+|+.+..
T Consensus        88 --~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   88 --E-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             --c-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence              1     57889999999999999999873322         112233578999999999999999999999987654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.05  E-value=2.4e-06  Score=66.09  Aligned_cols=57  Identities=19%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             ccccccCCCCCHHHHHHHhCCcHHHHHHHhccc-cccccccCCCCchhhhhhcccccCC
Q 040751          347 LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQ-VNYDAVNKQNVSVEHILDYEHILDF  404 (405)
Q Consensus       347 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g-~d~~~~~~~g~t~l~~a~~~~~~~~  404 (405)
                      .+|.+|..|+||||+|+..|..+.+.+|+.. | +.|-+.|..|.++..+|.+.+..+|
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgr-g~a~vgv~d~ssldaaqlaek~g~~~f   61 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGR-GVAFVGVTDESSLDAAQLAEKGGAQAF   61 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhcc-CcccccccccccchHHHHHHhcChHHH
Confidence            4899999999999999999999999999998 7 9999999999999999999987654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.00  E-value=1.8e-05  Score=68.00  Aligned_cols=73  Identities=25%  Similarity=0.211  Sum_probs=62.2

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      .--|+.||+.|+.+.|++|++.|.+                  +|..|.+..+||.+|+..|+..++++|+++|+-.. .
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn------------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-r   97 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN------------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-R   97 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC------------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-c
Confidence            4468999999999999999999988                  45899999999999999999999999999999876 4


Q ss_pred             cCCCCCcHHHHH
Q 040751          183 ANNDGKTPLYMA  194 (405)
Q Consensus       183 ~~~~g~t~L~~a  194 (405)
                      ...+|..++.-|
T Consensus        98 dtf~G~RC~Yga  109 (516)
T KOG0511|consen   98 DTFDGDRCHYGA  109 (516)
T ss_pred             cccCcchhhhhh
Confidence            455666554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.97  E-value=0.00011  Score=63.32  Aligned_cols=74  Identities=28%  Similarity=0.390  Sum_probs=61.2

Q ss_pred             hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhc
Q 040751          155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK  230 (405)
Q Consensus       155 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~  230 (405)
                      --|..|++.|+.+.+++|++.|.++| ..|....+||.+|+-.|+..+|++|+++|+--+.-..+|... |+++.+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            34788999999999999999999998 889999999999999999999999999998654444455554 444433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.92  E-value=1.6e-05  Score=77.53  Aligned_cols=82  Identities=24%  Similarity=0.313  Sum_probs=75.7

Q ss_pred             CCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhc
Q 040751          151 NEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK  230 (405)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~  230 (405)
                      ..|.|+||.|+..+..-...+|+++|++++ ..+..|.+|+|.+...|+...+..++++|++++..+.+|.+|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            467899999999999999999999999988 8899999999999999999999999999999999999999999999877


Q ss_pred             CCc
Q 040751          231 FDL  233 (405)
Q Consensus       231 ~~~  233 (405)
                      .+.
T Consensus       733 ~~~  735 (785)
T KOG0521|consen  733 ANA  735 (785)
T ss_pred             ccc
Confidence            554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.87  E-value=1.2e-05  Score=78.40  Aligned_cols=79  Identities=20%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             cCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       298 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                      ..|.|++|.|+..+..-+.++|++.|++                      +|.+|..|+||||.+...|+...+..|+++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~----------------------vn~~d~~g~~plh~~~~~g~~~~~~~ll~~  711 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD----------------------VNALDSKGRTPLHHATASGHTSIACLLLKR  711 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc----------------------chhhhccCCCcchhhhhhcccchhhhhccc
Confidence            4678999999999999999999999987                      466777888888899999999999899986


Q ss_pred             cccccccccCCCCchhhhhhcc
Q 040751          378 TQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       378 ~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                       |+++++.+..|++|+++|.+.
T Consensus       712 -~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  712 -GADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             -cccccccCccCcchhhHHhhh
Confidence             999999999999999998765

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.85  E-value=5.1e-05  Score=58.95  Aligned_cols=69  Identities=23%  Similarity=0.165  Sum_probs=55.0

Q ss_pred             cccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHH
Q 040751           93 SLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKIL  172 (405)
Q Consensus        93 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  172 (405)
                      .+++..|..|+||++.|+..|+.+.+.||+.+|...                 +...|..+.+++.+|-+.|..+++..|
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~-----------------vgv~d~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF-----------------VGVTDESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccc-----------------ccccccccchHHHHHHhcChHHHHHHH
Confidence            457778888888888888888888888888888322                 447788888888888888888888888


Q ss_pred             HhcCCC
Q 040751          173 TKEDPD  178 (405)
Q Consensus       173 l~~~~~  178 (405)
                      .+...+
T Consensus        66 fe~~~e   71 (223)
T KOG2384|consen   66 FENDRE   71 (223)
T ss_pred             HHHhcc
Confidence            877444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.61  E-value=0.00015  Score=70.80  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             cccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc------------ccccccCCCCCHHHHHH
Q 040751          296 DKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS------------LINEGDAMGNTPLHVLA  363 (405)
Q Consensus       296 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~  363 (405)
                      ....|++.+|+++..++..+++.+++--.......|..|.-.+|+++..+.            -++.+|..|+||||+|.
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            345889999999999999999999985222225678888888888765555            58899999999999999


Q ss_pred             HhCCcHHHHHHHhccccccc------cccCCCCchhhhhhcccccCC
Q 040751          364 AVRRNEFYDVMIRNTQVNYD------AVNKQNVSVEHILDYEHILDF  404 (405)
Q Consensus       364 ~~~~~~~v~~Ll~~~g~d~~------~~~~~g~t~l~~a~~~~~~~~  404 (405)
                      ..|+..++.-|++- |++..      ..+..|.|+-++|..+++..+
T Consensus       650 ~~G~e~l~a~l~~l-ga~~~~~tdps~~~p~g~ta~~la~s~g~~gi  695 (975)
T KOG0520|consen  650 FRGREKLVASLIEL-GADPGAVTDPSPETPGGKTAADLARANGHKGI  695 (975)
T ss_pred             hcCHHHHHHHHHHh-ccccccccCCCCCCCCCCchhhhhhcccccch
Confidence            99999999999975 66544      456679999999998877543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.50  E-value=0.0002  Score=70.03  Aligned_cols=128  Identities=20%  Similarity=0.147  Sum_probs=94.7

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751           95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      .......|.+.+|+++..++.-.++.+++- +..+.                  ..+.+|.-.+|+++ .+.++..-+|+
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~------------------eld~d~qgV~hfca-~lg~ewA~ll~  627 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL------------------ELDRDGQGVIHFCA-ALGYEWAFLPI  627 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCch------------------hhcccCCChhhHhh-hcCCceeEEEE
Confidence            445566789999999999999999999885 44332                  45666777777744 44566655555


Q ss_pred             h-cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCCcHHHHHHhcCCccHHHHHHHHHh
Q 040751          174 K-EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS------HEGPNGKTALHAAAMKFDLVDTALRKLLEK  244 (405)
Q Consensus       174 ~-~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~------~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~  244 (405)
                      . .|..++ ..|..|+||||+|..+|+..++..|++.|++..      .....|.|+-..|..+|+.  .+.-+|-+.
T Consensus       628 ~~~~~ai~-i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~--gia~~lse~  702 (975)
T KOG0520|consen  628 SADGVAID-IRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK--GIAGYLSEK  702 (975)
T ss_pred             eecccccc-cccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc--chHHHHhhh
Confidence            4 466665 789999999999999999999999998876543      3445688888888888887  555555443

>smart00248 ANK ankyrin repeats

Probab=96.90  E-value=0.0015  Score=34.25  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             CCCCHHHHHHHhCCcHHHHHHHhccccccc
Q 040751          354 MGNTPLHVLAAVRRNEFYDVMIRNTQVNYD  383 (405)
Q Consensus       354 ~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~  383 (405)
                      .|.||+|+|+..++.++++.|++. |.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~-~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDK-GADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence            478999999999999999999987 77664

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.83  E-value=0.00068  Score=60.75  Aligned_cols=51  Identities=12%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             cccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccc
Q 040751          350 EGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHI  401 (405)
Q Consensus       350 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~  401 (405)
                      ..+....|+||+|+..|..++|.+||++ |+|+-.+|..|+||.+++...+.
T Consensus       425 ~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~nkdV  475 (591)
T KOG2505|consen  425 ANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSANKDV  475 (591)
T ss_pred             ccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCcccccccHHH
Confidence            3345567999999999999999999998 89999999999999999885543

>smart00248 ANK ankyrin repeats

Probab=96.82  E-value=0.0028  Score=33.09  Aligned_cols=27  Identities=37%  Similarity=0.637  Sum_probs=16.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751          187 GKTPLYMAAESRSSDMVLALLENSTSV  213 (405)
Q Consensus       187 g~t~L~~a~~~~~~~~v~~Ll~~g~~~  213 (405)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.49  E-value=0.0065  Score=54.75  Aligned_cols=65  Identities=20%  Similarity=0.166  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHhcCCCCccc-----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 040751          164 KNVDVVKILTKEDPDYRYS-----ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAA  228 (405)
Q Consensus       164 ~~~~~~~~Ll~~~~~~~~~-----~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~  228 (405)
                      .-...+.+|.+++.+.|..     .+....|+||+|+..|..++|.+|++.|+|+...|..|.||...+.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3467788888888776532     2345689999999999999999999999999999999999988777

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.79  E-value=0.095  Score=41.22  Aligned_cols=43  Identities=23%  Similarity=0.098  Sum_probs=21.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHH
Q 040751          191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKL  241 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~L  241 (405)
                      |..|+..|-..++.-.+++|.+++.      +.|..|+...+.  .++.++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhR--kIL~yf  189 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHR--KILDYF  189 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHH--HHHHHh
Confidence            3445555555555555555544432      445555555444  444443

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.66  E-value=0.076  Score=41.74  Aligned_cols=45  Identities=13%  Similarity=0.033  Sum_probs=30.2

Q ss_pred             hHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 040751          157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE  208 (405)
Q Consensus       157 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~  208 (405)
                      |..|+..|-...+.-.++.|.+++       .++|..|+..++..++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHHHhhc
Confidence            456777777777776777766664       267777777777777766653

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.75  E-value=0.21  Score=40.59  Aligned_cols=47  Identities=21%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             CHHHHHHHHhcCCC-Cc--cccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 040751          165 NVDVVKILTKEDPD-YR--YSANNDGKTPLYMAAESRSSDMVLALLENST  211 (405)
Q Consensus       165 ~~~~~~~Ll~~~~~-~~--~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~  211 (405)
                      +..++++++.+|.- ++  ..+-..|.|.|.-|+++++.+++.+|+++|+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            45566666666532 22  1233456666666666666666666666665

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.19  E-value=0.2  Score=33.75  Aligned_cols=48  Identities=21%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      ...+..|+..|+.++++.+++.+..                         ....+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-------------------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-------------------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-------------------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            3568899999999999999876532                         14668899999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.07  E-value=0.63  Score=37.99  Aligned_cols=121  Identities=19%  Similarity=0.260  Sum_probs=71.1

Q ss_pred             hHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHH
Q 040751          157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT  236 (405)
Q Consensus       157 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~  236 (405)
                      |..|+..-+.+-+.-++..        ...-.+++-+++..+..+++.+|++.-- .        |.-..|-.....  .
T Consensus       157 ledAV~AsN~~~i~~~Vtd--------KkdA~~Am~~si~~~K~dva~~lls~f~-f--------t~~dv~~~~~~~--y  217 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTD--------KKDAHQAMWLSIGNAKEDVALYLLSKFN-F--------TKQDVASMEKEL--Y  217 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcc--------hHHHHHHHHHHhcccHHHHHHHHHhhcc-e--------ecchhhhcCcch--h
Confidence            4566666666666666532        1223467777777777777777775421 1        111112222223  3


Q ss_pred             HHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccccc--ccCCccHHHHHHhcCCHH
Q 040751          237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIAD--KDRKMTALHLAAGQGNAE  314 (405)
Q Consensus       237 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~--~~~g~t~l~~A~~~~~~~  314 (405)
                      -+.++|...+.                             +..+.++++++|-...+...  -..|.|-|.-|+++++.+
T Consensus       218 dieY~LS~h~a-----------------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~e  268 (284)
T PF06128_consen  218 DIEYLLSEHSA-----------------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSE  268 (284)
T ss_pred             hHHHHHhhcCC-----------------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHH
Confidence            45555544322                             22255566665543333322  158899999999999999


Q ss_pred             HHHHHHhcCCc
Q 040751          315 IVDAIISKNPE  325 (405)
Q Consensus       315 ~v~~Ll~~~~~  325 (405)
                      ++.+|+++|+-
T Consensus       269 mi~~Llk~GA~  279 (284)
T PF06128_consen  269 MIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHcCcc
Confidence            99999999974

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.96  E-value=0.47  Score=31.94  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=32.9

Q ss_pred             hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 040751          155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN  209 (405)
Q Consensus       155 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  209 (405)
                      ..+..|+..|+.|+++.+++.+ .+.       ...+..|+..-+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4567788888888888777544 111       3467778888788888887765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=83.01  E-value=34  Score=30.50  Aligned_cols=264  Identities=9%  Similarity=0.046  Sum_probs=142.4

Q ss_pred             CHHHHHHhhcCCCchhhhhHHH---HHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMARE---KIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH  107 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  107 (405)
                      ...+..+...++.+....+++.   .+-....+..|...+..+  ...+..+-...+++.+.. ....-..+..|.-.+.
T Consensus        22 sr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~--l~~~~~~~~~~i~~~~~~-~~~~l~~~~~g~~vlq   98 (322)
T cd07920          22 SRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKL--FEHGTEEQRLQLLEKILG-HVVRLSLDMYGCRVIQ   98 (322)
T ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHH--HHhCCHHHHHHHHHHHHH-HHHHHcccchhHHHHH
Confidence            3457888888888888888776   233336666788777777  666655555555543321 1111234556666666


Q ss_pred             HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc--CCCCccccCC
Q 040751          108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANN  185 (405)
Q Consensus       108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~  185 (405)
                      .+...+..+....+++.-..             ..  .--..|..|...+..+......+..+.+++.  +.-.....+.
T Consensus        99 kll~~~~~~~~~~i~~~l~~-------------~~--~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~  163 (322)
T cd07920          99 KLLESISEEQISLLVKELRG-------------HV--VELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHP  163 (322)
T ss_pred             HHHHhcCHHHHHHHHHHHHH-------------CH--HHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCc
Confidence            66666654444444432110             00  0124566787777777777666655555543  1111223566


Q ss_pred             CCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh--hhhhcccCCCCH
Q 040751          186 DGKTPLYMAAESRSSDM----VLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN--LIKETDQYGWTP  259 (405)
Q Consensus       186 ~g~t~L~~a~~~~~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~--~~~~~~~~~~t~  259 (405)
                      .|...+.-+......+.    ++.+..+ ...-..|..|...+..+...+..  +....+++.-..  ..-..++.|...
T Consensus       164 ~G~~vvq~~l~~~~~~~~~~l~~~l~~~-~~~L~~d~~Gn~vvq~~l~~~~~--~~~~~i~~~l~~~~~~l~~~k~Gs~V  240 (322)
T cd07920         164 YGCRVIQRCLEHCSEEQREPLLEEILEH-ALELVQDQFGNYVVQHVLELGDP--DDTSRIIEKLLGNIVQLSCHKFASNV  240 (322)
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHHHHHH-HHHHhcCCchhhHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHcCcchHHH
Confidence            78777777777665443    3333332 22234567788888888877765  444444433211  122456777777


Q ss_pred             HHHHHHcChhhhhhhccccchhHHHHhhc---ccccccccccCCccHHHHHHhcCCHHHHHHHH
Q 040751          260 IHYAAYHGMYWINRFYGNYGTVNLLLETD---QSASNIADKDRKMTALHLAAGQGNAEIVDAII  320 (405)
Q Consensus       260 l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~---~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  320 (405)
                      +..+...+.....     ..+++.++...   ........+..|...+..+.........+.++
T Consensus       241 ve~~l~~~~~~~~-----~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~  299 (322)
T cd07920         241 VEKCLKHASKEER-----ELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLV  299 (322)
T ss_pred             HHHHHHHCCHHHH-----HHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHH
Confidence            7777666532111     12444444332   11112233347777777776666544333333

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		7e-13
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		6e-08
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-07
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		4e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		4e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-04
1uoh_A	226	Human Gankyrin Length = 226		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		8e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		4e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		4e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		9e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 130/332 (39%), Gaps = 85/332 (25%)
Query: 58  LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGI 117
           L     +T LHI       E V     +E  + C      +  KG TPLHVAAK+G   +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 118 VTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP 177
              L+ER     H N   ++G+               T LH AV H N+D+VK+L     
Sbjct: 162 AELLLERDA---HPNAAGKNGL---------------TPLHVAVHHNNLDIVKLLLPRGG 203
Query: 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTA 237
                A N G TPL++AA+    ++  +LL+   S + E   G T LH AA +       
Sbjct: 204 SPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE------- 255
Query: 238 XXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADK 297
                                                 G+   V LLL + Q+  N+ +K
Sbjct: 256 --------------------------------------GHAEMVALLL-SKQANGNLGNK 276
Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA-------VVTRSLINE 350
              +T LHL A +G+  + D +I K+    +     G+  LH A       +V   L ++
Sbjct: 277 S-GLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 351 GDA-----MGNTPLHVLAAVRRNEFYDVMIRN 377
            D      +G +PLH  A     +   ++++N
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 66/254 (25%)
Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
           V+E+L   PSLLLQ +  G  PLH +  F    I +FL+ +      EN  L+       
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
                 ++   T  H A    N++VVK L      PD      N G T L++A   +  +
Sbjct: 67  ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIH 261
           +   L+EN  SV                                       D++   P+H
Sbjct: 122 VSQFLIENGASVR------------------------------------IKDKFNQIPLH 145
Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGQGNAEIVDAII 320
            AA           G+   + LL    +SA N  DK       H LA G G+A ++  ++
Sbjct: 146 RAAS---------VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 321 SKNPECYELVDNRG 334
            K    Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 66/254 (25%)
Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
           V+E+L   PSLLLQ +  G  PLH +  F    I +FL+ +      EN  L+       
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
                 ++   T  H A    N++VVK L      PD      N G T L++A   +  +
Sbjct: 67  ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIH 261
           +   L+EN  SV                                       D++   P+H
Sbjct: 122 VSQFLIENGASVR------------------------------------IKDKFNQIPLH 145
Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGQGNAEIVDAII 320
            AA           G+   + LL    +SA N  DK       H LA G G+A ++  ++
Sbjct: 146 RAAS---------VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 321 SKNPECYELVDNRG 334
            K    Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 66/254 (25%)
Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
           V+E+L   PSLLLQ +  G  PLH +  F    I +FL+ +      EN  L+       
Sbjct: 18  VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
                 ++   T  H A    N++VVK L      PD      N G T L++A   +  +
Sbjct: 67  ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIH 261
           +   L+EN  SV                                       D++   P+H
Sbjct: 122 VSQFLIENGASVR------------------------------------IKDKFNQIPLH 145
Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGQGNAEIVDAII 320
            AA           G+   + LL    +SA N  DK       H LA G G+A ++  ++
Sbjct: 146 RAAS---------VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 321 SKNPECYELVDNRG 334
            K    Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AA+ GH  +V  L+E                  A   +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
            + +++VVK+L +   D   + + +G+TPL++AA +   ++V  LLE    V+ +  NG+
Sbjct: 44  RNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 222 TALHAAA 228
           T LH AA
Sbjct: 103 TPLHLAA 109

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXX 245
           +G+TPL++AA +   ++V  LLE    V+ +  NG+T LH AA    L            
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEA 57
Query: 246 XXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH 305
                  D+ G TP+H AA +G   +         V LLLE      N  DK+ + T LH
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEV---------VKLLLEAGADV-NAKDKNGR-TPLH 106
Query: 306 LAAGQGNAEIVDAII 320
           LAA  G+ E+V  ++
Sbjct: 107 LAARNGHLEVVKLLL 121

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 77  ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKL--------- 127
           EN   E V+ ++ K  +L+   +A+G T LH+AAK GH  +V +L+   ++         
Sbjct: 53  ENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111
Query: 128 -------PQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
                   ++++ +L   + +    I + +NE+N  LH A     VD+ +IL     D  
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL- 170
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229
           ++ N  G +PL++AA     D V+  L   + V+ +   G+T L  A++
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
            KM +  K + LH A    +VD+  +L +   +   + + D +TPL  AAE+   + V  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKY 62
Query: 206 LLENSTSVSHEGPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYA 263
           L++    V  +   G T LH AA K  +++V                  D  GWTP    
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKGHYEVV----QYLLSNGQMDVNCQDDGGWTP---- 114
Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
               M W    Y +   V LLL +  S  NI D +  +  LH AA  G  +I + +++  
Sbjct: 115 ----MIWATE-YKHVDLVKLLL-SKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAK 167
Query: 324 PECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMI 375
            +            LH   +           G++PLH+ A   R   YD ++
Sbjct: 168 CD------------LHAVNIH----------GDSPLHIAA---RENRYDCVV 194

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 28  SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
           S++  +  +AA +GN +  KD+     +   +     T LH           + E  +EI
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHY---------AAKEGHKEI 52
Query: 88  LEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ 144
           ++   S    VNAK   G TPLH AAK GH  IV  L+ +                    
Sbjct: 53  VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG------------------A 94
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
            +   +++  T LH A    + ++VK+L  +  D   S ++DG+TPL +A E  + ++V 
Sbjct: 95  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEIV- 152
Query: 205 ALLE 208
            LLE
Sbjct: 153 KLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 77  ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
           EN + + V++++E    +    ++ G TPLH AAK GH  IV  L+ +            
Sbjct: 13  ENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKG----------- 60
Query: 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
                    +   +++  T LH A    + ++VK+L  +  D   + ++DG+TPL+ AA+
Sbjct: 61  -------ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAK 112
Query: 197 SRSSDMVLALLENSTSVSHEGPNGKTALHAA 227
               ++V  L+     V+    +G+T L  A
Sbjct: 113 EGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           L EA  + N D VK L +   D   S ++DG+TPL+ AA+    ++V  L+     V+ +
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 217 GPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYG 276
             +G+T LH AA +                      D  G TP+HYAA  G   I     
Sbjct: 67  DSDGRTPLHYAAKEG---HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI----- 118
Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
               V LL+ +  +  N +D D + T L LA   GN EIV
Sbjct: 119 ----VKLLI-SKGADVNTSDSDGR-TPLDLAREHGNEEIV 152

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
           GN   V  L+E      N +D D + T LH AA +G+ EIV  +ISK  +     D+ G 
Sbjct: 15  GNKDRVKDLIENGADV-NASDSDGR-TPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGR 71
Query: 336 NFLHYAV------VTRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMI-RNTQVN 381
             LHYA       + + LI++G      D+ G TPLH  A     E   ++I +   VN
Sbjct: 72  TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
           EA  + N D VK L +   D   S ++DGKTPL++AAE+   ++V  LL      + +  
Sbjct: 10  EAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 219 NGKTALHAAA-------MKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
           +GKT LH AA       +K  L   A               D  G TP+H AA +G   +
Sbjct: 69  DGKTPLHLAAENGHKEVVKLLLSQGA----------DPNAKDSDGKTPLHLAAENGHKEV 118
Query: 272 NRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
                    V LLL +  +  N +D D + T L LA   GN E+V
Sbjct: 119 ---------VKLLL-SQGADPNTSDSDGR-TPLDLAREHGNEEVV 152

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
           EA  + N D VK L +   D   S ++DG+TPL+ AAE+   ++V  LL      + +  
Sbjct: 10  EAAENGNKDRVKDLLENGADPNAS-DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 219 NGKTALHAAA-------MKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
           +G+T LH AA       +K  L   A               D  G TP+HYAA +G   I
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGA----------DPNAKDSDGRTPLHYAAENGHKEI 118
Query: 272 NRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
                    V LLL +  +  N +D D + T L LA   GN EIV
Sbjct: 119 ---------VKLLL-SKGADPNTSDSDGR-TPLDLAREHGNEEIV 152

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 32/184 (17%)
Query: 28  SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
           S++  +  +AA +GN +  KD+     +   +     T LH        EN   E V+ +
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH-----HAAENGHKEVVKLL 56
Query: 88  LEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ 144
           + K       VNAK   G TPLH AA+ GH  +V  L+ +                    
Sbjct: 57  ISKGA----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKG------------------A 94
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
            +   +++  T LH A  + + +VVK+L  +  D   S ++DG+TPL +A E   ++ V+
Sbjct: 95  DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLARE-HGNEEVV 152
Query: 205 ALLE 208
            LLE
Sbjct: 153 KLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 77  ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
           EN + + V++++E    +    ++ G TPLH AA+ GH  +V  L+ +            
Sbjct: 13  ENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKG----------- 60
Query: 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
                    +   +++  T LH A  + + +VVK+L  +  D   + ++DG+TPL+ AAE
Sbjct: 61  -------ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAE 112
Query: 197 SRSSDMVLALLENSTSVSHEGPNGKTAL 224
           +   ++V  L+     V+    +G+T L
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPL 140

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
           EA  + N D VK L +   D   S ++DG+TPL+ AAE+   ++V  L+     V+ +  
Sbjct: 10  EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 219 NGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNY 278
           +G+T LH AA                        D  G TP+H+AA +G   +       
Sbjct: 69  DGRTPLHHAAENG---HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV------- 118
Query: 279 GTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
             V LL+ +  +  N +D D + T L LA   GN E+V
Sbjct: 119 --VKLLI-SKGADVNTSDSDGR-TPLDLAREHGNEEVV 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 33/125 (26%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
           +D  GWTP+H AAY         +G+   V +LL+     +  AD    +T LHLAA +G
Sbjct: 43  SDHVGWTPLHLAAY---------FGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
           + E+V+ ++    +                      +N  D  G TPLH+ A +   E  
Sbjct: 92  HLEVVEVLLKNGAD----------------------VNANDHNGFTPLHLAANIGHLEIV 129
Query: 372 DVMIR 376
           +V+++
Sbjct: 130 EVLLK 134

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 22/130 (16%)
Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNA+   G TPLH+AA FGH  IV  L++        N +   GV               
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG---ADVNAKDSLGV--------------- 81
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           T LH A    ++++V++L K   D   S ++ G TPL++AA+    ++V  LL+N   V+
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 215 HEGPNGKTAL 224
            +   GKTA 
Sbjct: 141 AQDKFGKTAF 150

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 35/126 (27%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGQG 311
           D  GWTP+H AA+         +G+   V +LL   ++ +++  KD   +T LHLAA +G
Sbjct: 44  DFTGWTPLHLAAH---------FGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
           + EIV+ ++    +                      +N  D+ G TPLH+ A     E  
Sbjct: 92  HLEIVEVLLKNGAD----------------------VNASDSHGFTPLHLAAKRGHLEIV 129
Query: 372 DVMIRN 377
           +V+++N
Sbjct: 130 EVLLKN 135

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 28/133 (21%)
Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNA+   GDTPLH+AA+ GH  IV  L++                GA    +  +    +
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG---S 81
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANND---GKTPLYMAAESRSSDMVLALLENST 211
           T LH A    ++++V++L K    Y    N D   G TPL++AA++   ++V  LL+   
Sbjct: 82  TPLHLAAKRGHLEIVEVLLK----YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 212 SVSHEGPNGKTAL 224
            V+ +   GKTA 
Sbjct: 138 DVNAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK   G TPLH+AA+ GH  IV  L++                  A   +   + +  
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 81
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           T LH A    ++++V++L K   D   + + DG TPL++AA     ++V  LL+    V+
Sbjct: 82  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 215 HEGPNGKTAL 224
            +   GKTA 
Sbjct: 141 AQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           L EA      D V+IL     D   + + DG TPL++AA     ++V  LL+    V+ +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
             +G T LH AA +   ++V+                 D+ G+TP+H AA  G   I
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEI 128

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 63  RNTILHINIISKERENVSTEFVEEIL-EKC-PSLLLQVNAKGDTPLHVAAKFGHSGIVTF 120
           + T LH+ +I+ +      E  E +L   C P L    + +G+TPLH+A + G    V  
Sbjct: 42  QQTPLHLAVITNQ-----PEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGV 93
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
           L +    P                ++K TN   +T LH A  H  + +V++L     D  
Sbjct: 94  LTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
                +G+T L++A + ++ D+V  LL+    V
Sbjct: 142 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 174

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 19/255 (7%)
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           E N  L +AV +++VD+V+ L +   +  +     G TPL+ A +    D+V  LL +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
                  NG T    AA+   +                   D YG+T    AA +G    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSV---KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 272 NRF-YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330
            +F Y     VNL  +T +    +  +    TAL  AA +G+ E++  ++ +        
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERL--RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178
Query: 331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD---AVNK 387
           DN G N L +A+++           ++ +  +  +  +   DV +R  +       AV K
Sbjct: 179 DNMGRNALIHALLSSD---------DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 388 QNVS-VEHILDYEHI 401
           +++  V+ +L+ EHI
Sbjct: 230 KHLGLVQRLLEQEHI 244

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 19/255 (7%)
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           E N  L +AV +++VD+V+ L +   +  +     G TPL+ A +    D+V  LL +  
Sbjct: 24  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
                  NG T    AA+   +                   D YG+T    AA +G    
Sbjct: 84  DPVLRKKNGATPFILAAIAGSV---KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 140
Query: 272 NRF-YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330
            +F Y     VNL  +T +    +  +    TAL  AA +G+ E++  ++ +        
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERL--RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 198
Query: 331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD---AVNK 387
           DN G N L +A     L++  D+      H+L     +   DV +R  +       AV K
Sbjct: 199 DNMGRNALIHA-----LLSSDDSDVEAITHLLL----DHGADVNVRGERGKTPLILAVEK 249
Query: 388 QNVS-VEHILDYEHI 401
           +++  V+ +L+ EHI
Sbjct: 250 KHLGLVQRLLEQEHI 264

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           L EA      D V+IL     D   + +N G TPL++AA +   ++V  LL+N   V+  
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
              G T LH AA     ++V+                 D+ GWTP+H AA  G   I   
Sbjct: 69  DSAGITPLHLAAYDGHLEIVEV-----LLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 275 YGNYGT 280
              +G 
Sbjct: 124 LLKHGA 129

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK   G TPLH+AA+ GH  IV  L++                  A   +   + +  
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 69
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           T LH A    ++++V++L K   D   + + DG TPL++AA     ++V  LL+    V+
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 215 HEGPNGKT 222
            +   GKT
Sbjct: 129 AQDKFGKT 136

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 63  RNTILHINIISKERENVSTEFVEEIL-EKC-PSLLLQVNAKGDTPLHVAAKFGHSGIVTF 120
           + T LH+ +I+ +      E  E +L   C P L    + +G+TPLH+A + G    V  
Sbjct: 45  QQTPLHLAVITNQ-----PEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGV 96
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
           L +    P                ++K TN   +T LH A  H  + +V++L     D  
Sbjct: 97  LTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
                +G+T L++A + ++ D+V  LL+    V
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AA  GH  IV  L++                GA      +T     T LH A 
Sbjct: 47  GYTPLHLAASNGHLEIVEVLLKN---------------GADVNASDLTG---ITPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
              ++++V++L K   D   + +NDG TPL++AA+    ++V  LL++   V+ +   GK
Sbjct: 89  ATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 222 TAL 224
           TA 
Sbjct: 148 TAF 150

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK   G TPLH+AA+ GH  IV  L++                  A   +   + +  
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 69
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           T LH A    ++++V++L K   D   + + DG TPL++AA     ++V  LL+    V+
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 215 HEGPNGKT 222
            +   GKT
Sbjct: 129 AQDKFGKT 136

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           L EA      D V+IL     D   + + DG TPL++AA     ++V  LL+    V+ +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
             +G T LH AA +   ++V+                 D+ G+TP+H AA  G   I   
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEI--- 116
Query: 275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
                 V +LL+      N  DK  K T   LA   GN +I + +
Sbjct: 117 ------VEVLLKAGADV-NAQDKFGK-TPFDLAIDNGNEDIAEVL 153

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 128 PQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG 187
           P  ENEE E      R  ++  N + +T LH AV HK+ ++V++L     D        G
Sbjct: 134 PNPENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK 230
           +TPL++A E++++ ++  LL+     +     G+T L +A ++
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 128 PQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG 187
           P  ENEE E      R  ++  N + +T LH AV HK+ ++V++L     D        G
Sbjct: 134 PNPENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK 230
           +TPL++A E++++ ++  LL+     +     G+T L +A ++
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           L EA      D V+IL     D   + ++ GKTPL++AA     ++V  LL++   V+  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 217 GPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
              G T LH AA+    ++V+                TD YG+TP+H AA  G   I   
Sbjct: 77  DKMGDTPLHLAALYGHLEIVEV-----LLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 275 YGNYGT 280
              YG 
Sbjct: 132 LLKYGA 137

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXX 248
           L  AA +   D V  L+ N   V+ E  +GKT LH AA+K   ++V+             
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEV-----LLKHGAD 72
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308
               D+ G TP+H AA          YG+   V +LL+     +  A      T LHLAA
Sbjct: 73  VNAADKMGDTPLHLAA---------LYGHLEIVEVLLKNGADVN--ATDTYGFTPLHLAA 121
Query: 309 GQGNAEIVDAII 320
             G+ EIV+ ++
Sbjct: 122 DAGHLEIVEVLL 133

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
           EEL+  + A + +   T+ +  TALH A    + ++V+ L +         ++ G +PL+
Sbjct: 20  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
           +AA +   ++V ALL     V+    NG T LH AA K                      
Sbjct: 79  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
           D Y  T +H AA           GN   +++LL   ++++NI D +   T LHLA  +  
Sbjct: 136 DHYEATAMHRAAAK---------GNLKMIHILLYY-KASTNIQDTEGN-TPLHLACDEER 184
Query: 313 AEIVDAIISKNPECY 327
            E    ++S+    Y
Sbjct: 185 VEEAKLLVSQGASIY 199

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
           EEL+  + A + +   T+ +  TALH A    + ++V+ L +         ++ G +PL+
Sbjct: 21  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 79
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
           +AA +   ++V ALL     V+    NG T LH AA K                      
Sbjct: 80  IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 136
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
           D Y  T +H AA           GN   +++LL   ++++NI D +   T LHLA  +  
Sbjct: 137 DHYEATAMHRAAAK---------GNLKMIHILLYY-KASTNIQDTEGN-TPLHLACDEER 185
Query: 313 AEIVDAIISKNPECY 327
            E    ++S+    Y
Sbjct: 186 VEEAKLLVSQGASIY 200

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AAK GH  IV  L++                      +   +N   T LH A 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYG------------------ADVNAWDNYGATPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
            + ++++V++L K   D   + + +G TPL++AA     ++V  LL+    V+ +   GK
Sbjct: 89  DNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 222 TAL 224
           TA 
Sbjct: 148 TAF 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           T LH A  + +++VVK+L +   D   + + +G+TPL++AA +   ++V  LLE    V+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 215 HEGPNGKTALHAAA 228
            +  NG+T LH AA
Sbjct: 63  AKDKNGRTPLHLAA 76

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXX 245
           +G+TPL++AA +   ++V  LLE    V+ +  NG+T LH AA    L            
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEA 57
Query: 246 XXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLET 287
                  D+ G TP+H AA +G   +         V LLLE 
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEV---------VKLLLEA 90

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 48/170 (28%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           L EA      D V+IL     D   +A+N G TPL++AA S   ++V  LL++   V   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-- 74
Query: 217 GPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYG 276
                                              +D +G+TP+H AAY         +G
Sbjct: 75  ----------------------------------ASDVFGYTPLHLAAY---------WG 91
Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPEC 326
           +   V +LL+      N  D D  MT LHLAA  G  EIV+ ++    + 
Sbjct: 92  HLEIVEVLLKNGADV-NAMDSD-GMTPLHLAAKWGYLEIVEVLLKHGADV 139

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 33  KFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCP 92
           K  +A ADG++E  + +     E L  A+   +           +       ++ L K P
Sbjct: 14  KLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP 73
Query: 93  SLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT 149
           +  L VN     G +PLHVAA  G + ++  L             L+ G  A  +     
Sbjct: 74  ASGLGVNVTSQDGSSPLHVAALHGRADLIPLL-------------LKHGANAGAR----- 115
Query: 150 NNEKNTALHEAVCHKNVDVVKIL--TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
           N ++   LH A    +  VVK L  +   P+ +   +  G TPL  A      ++V  LL
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK---DLSGNTPLIYACSGGHHELVALLL 172
Query: 208 ENSTSVSHEGPNGKTALHAAAMK 230
           ++  S++     G TALH A ++
Sbjct: 173 QHGASINASNNKGNTALHEAVIE 195

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 12/175 (6%)
Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
           ++  + E  T LH A  +  +D+VK    +         +   TPL+ A       MV+ 
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAY 265
           L++     S     G + +H AA       T+               DQ G TP+ +AAY
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAA---QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Query: 266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
                      +     LLL  + S  N+ DK  K TALH A   GN  ++  ++
Sbjct: 152 RTH--------SVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLL 197

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AA  GH  IV  L             L +G       +   +    T LH A 
Sbjct: 35  GRTPLHMAAAVGHLEIVEVL-------------LRNGAD-----VNAVDTNGTTPLHLAA 76
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
              ++++V++L K   D   + +  G TPLY+AA     ++V  LL++   V+ +   GK
Sbjct: 77  SLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 222 TAL 224
           TA 
Sbjct: 136 TAF 138

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
           +G TPLH+AA  GH  IV  L++                      +   + +  T LH A
Sbjct: 46  QGSTPLHLAAWIGHPEIVEVLLKHGA------------------DVNARDTDGWTPLHLA 87
Query: 161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG 220
             + ++++V++L K   D   + +  G TPL++AA+    ++V  LL++   V+ +   G
Sbjct: 88  ADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 221 KTAL 224
           KTA 
Sbjct: 147 KTAF 150

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 33/125 (26%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
           D  GWTP+H AA++G   I         V +LL+     + +      MT L LAA  G+
Sbjct: 44  DASGWTPLHLAAFNGHLEI---------VEVLLKNGADVNAV--DHAGMTPLRLAALFGH 92
Query: 313 AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD 372
            EIV+ ++    +                      +N  D  G+TPLH+ A     E  +
Sbjct: 93  LEIVEVLLKNGAD----------------------VNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 373 VMIRN 377
           V+++N
Sbjct: 131 VLLKN 135

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AA +GH  IV  L++                      +   +   +T LH A 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNG------------------ADVNAYDTLGSTPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
              ++++V++L K   D     +N G TPL++AA     ++V  LL+    V+ +   GK
Sbjct: 89  HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 222 TAL 224
           TA 
Sbjct: 148 TAF 150

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 75  ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
           E E  +   + + + +  SL  Q +  G+T LH+AA++  S     L+E           
Sbjct: 31  EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------- 79
Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPL 191
                  A     + +N   T LH AV      V +IL +    D D R    +DG TPL
Sbjct: 80  -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPL 129
Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225
            +AA      M+  L+ +   V+     GK+ALH
Sbjct: 130 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 75  ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
           E E  +   + + + +  SL  Q +  G+T LH+AA++  S     L+E           
Sbjct: 30  EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------- 78
Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPL 191
                  A     + +N   T LH AV      V +IL +    D D R    +DG TPL
Sbjct: 79  -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPL 128
Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225
            +AA      M+  L+ +   V+     GK+ALH
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
           +EL+  + A + +   T+ +  TALH A    + ++V+ L +         ++ G +PL+
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
           +AA +   ++V ALL     V+    NG T LH AA K                      
Sbjct: 79  IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
           D Y  T +H AA           GN   V++LL   ++++NI D +   T LHLA  +  
Sbjct: 136 DHYDATAMHRAAAK---------GNLKMVHILLFY-KASTNIQDTEGN-TPLHLACDEER 184
Query: 313 AEIVDAIISKNPECY 327
            E    ++++    Y
Sbjct: 185 VEEAKFLVTQGASIY 199

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
           +EL+  + A + +   T+ +  TALH A    + ++V+ L +         ++ G +PL+
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
           +AA +   ++V ALL     V+    NG T LH AA K                      
Sbjct: 79  IAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
           D Y  T +H AA           GN   V++LL   ++++NI D +   T LHLA  +  
Sbjct: 136 DHYDATAMHRAAAK---------GNLKMVHILLFY-KASTNIQDTEGN-TPLHLACDEER 184
Query: 313 AEIVDAIISKNPECY 327
            E    ++++    Y
Sbjct: 185 VEEAKFLVTQGASIY 199

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 77  ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
           E+ + + + ++L +   L   ++  G+T LH+AA+F  +     L             L+
Sbjct: 26  EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL-------------LD 72
Query: 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
           +G  A  Q     +N   T LH AV    + V +IL +       +  +DG TPL +AA 
Sbjct: 73  AGADANSQ-----DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR 127
Query: 197 SRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYG 256
                MV  L+     ++    +GKTALH AA    + +T                D   
Sbjct: 128 LAIEGMVEDLITADADINAADNSGKTALHWAAA---VNNTEAVNILLMHHANRDAQDDKD 184
Query: 257 WTPIHYAAYHGMY 269
            TP+  AA  G Y
Sbjct: 185 ETPLFLAAREGSY 197

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
           L+E A+  Q +   +    GA    +   + + NT LH A  + ++++V++L K   D  
Sbjct: 18  LLEAARAGQDDEVRILMANGAD---VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTAL 224
            + +NDG TPL++AA     ++V  LL++   V+ +   GKTA 
Sbjct: 75  -AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 84  VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
           + + + +  SL  Q +  G+T LH+AA++  S     L+E                  A 
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------------------AS 48
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPLYMAAESRSS 200
               + +N   T LH AV      V +IL +    D D R    +DG TPL +AA     
Sbjct: 49  ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPLILAARLAVE 105
Query: 201 DMVLALLENSTSVSHEGPNGKTALH 225
            M+  L+ +   V+     GK+ALH
Sbjct: 106 GMLEDLINSHADVNAVDDLGKSALH 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-38
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-28
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-21
2rfa_A	232	Transient receptor potential cation channel subfa	3e-28
2rfa_A	232	Transient receptor potential cation channel subfa	1e-23
2rfa_A	232	Transient receptor potential cation channel subfa	2e-21
2rfa_A	232	Transient receptor potential cation channel subfa	7e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-06
2etb_A	256	Transient receptor potential cation channel subfam	4e-25
2etb_A	256	Transient receptor potential cation channel subfam	1e-16
2etb_A	256	Transient receptor potential cation channel subfam	1e-13
2etb_A	256	Transient receptor potential cation channel subfam	9e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-24
2pnn_A	273	Transient receptor potential cation channel subfa	8e-23
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
2pnn_A	273	Transient receptor potential cation channel subfa	2e-15
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-05

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  153 bits (389), Expect = 2e-42
 Identities = 86/287 (29%), Positives = 122/287 (42%), Gaps = 60/287 (20%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
                  G TPLHVA+  GH  IV  L++R               GA+     ++N +  
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQR---------------GAS---PNVSNVKVE 48

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
           T LH A    + +V K L +     +   +   D +TPL+ AA    ++MV  LLEN+ +
Sbjct: 49  TPLHMAARAGHTEVAKYLLQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105

Query: 213 VSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW 270
            +     G T LH AA +   + V      LLEK+ +      + G+TP+H AA      
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETV----LALLEKEAS-QACMTKKGFTPLHVAAK----- 155

Query: 271 INRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYEL 329
               YG      LLLE  + A  N A K+  +T LH+A    N +IV  ++ +       
Sbjct: 156 ----YGKVRVAELLLE--RDAHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGS-PHS 207

Query: 330 VDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAA 364
               G+  LH A       V RSL+      N     G TPLH LAA
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  153 bits (389), Expect = 2e-42
 Identities = 77/295 (26%), Positives = 117/295 (39%), Gaps = 64/295 (21%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
            LLQ     N      +TPLH+AA+ GH+ +  +L++                 A    +
Sbjct: 32  NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---------------KA---KV 73

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVL 204
                +  T LH A    + ++VK+L +   +P+    A   G TPL++AA     + VL
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN---LATTAGHTPLHIAAREGHVETVL 130

Query: 205 ALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHY 262
           ALLE   S +     G T LH AA      +       LLE+  +      + G TP+H 
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVA----ELLLERDAH-PNAAGKNGLTPLHV 185

Query: 263 AAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIIS 321
           A +         + N   V LLL   +  S +    +   T LH+AA Q   E+  +++ 
Sbjct: 186 AVH---------HNNLDIVKLLLP--RGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQ 233

Query: 322 KNPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAA 364
                      +G   LH A       +   L+      N G+  G TPLH L A
Sbjct: 234 YGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH-LVA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (372), Expect = 4e-40
 Identities = 73/295 (24%), Positives = 110/295 (37%), Gaps = 66/295 (22%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
           LLL+     NA    G TPLHVA    +  IV  L+ R               G +    
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR---------------GGS---P 205

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVL 204
                   T LH A     V+V + L +     +   + +  G TPL++AA+   ++MV 
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVA 262

Query: 205 ALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHY 262
            LL    + +    +G T LH  A +    + D     L++     +  T + G+TP+H 
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV----LIKHGVM-VDATTRMGYTPLHV 317

Query: 263 AAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIIS 321
           A++         YGN   V  LL+    A  N   K    + LH AA QG+ +IV  ++ 
Sbjct: 318 ASH---------YGNIKLVKFLLQ--HQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLLK 365

Query: 322 KNPECYELVDNRGWNFLHYAV------VTRSL---------INEGDAMGNTPLHV 361
                 E V + G   L  A       VT  L         +   D    +    
Sbjct: 366 NGASPNE-VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET 419

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (333), Expect = 1e-34
 Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 44/242 (18%)

Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMV 203
                    T LH A    ++ +VK L +    P+    +N   +TPL+MAA +  +++ 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTEVA 63

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
             LL+N   V+ +  + +T LH AA     ++V    + LLE   N        G TP+H
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV----KLLLENNAN-PNLATTAGHTPLH 118

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAII 320
            AA           G+  TV  LLE  + AS     K    T LH+AA  G   + + ++
Sbjct: 119 IAARE---------GHVETVLALLE--KEASQACMTKKGF-TPLHVAAKYGKVRVAELLL 166

Query: 321 SK--NPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVR 366
            +  +P         G   LH AV      + + L+      +     G TPLH+  A +
Sbjct: 167 ERDAHPNA---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI--AAK 221

Query: 367 RN 368
           +N
Sbjct: 222 QN 223

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  146 bits (370), Expect = 3e-41
 Identities = 54/295 (18%), Positives = 86/295 (29%), Gaps = 61/295 (20%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           V   GDT LH+A    H   + FL+                  A  + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49

Query: 158 HEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           H A        V+ L            A   G T L++A   R+      LL+   S   
Sbjct: 50  HLAAILGEASTVEKLYAAGAGVL---VAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

Query: 216 EGPNGKTALHAAAMKFDLVDTAL-----------RKLLEKKENLIKETDQYGWTPIHYAA 264
           +  +                 A                E     ++  +  G TP+H A 
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 265 YHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK- 322
                     + +   V LL +    A  N  +     T LHLA     A +++ ++   
Sbjct: 167 I---------HKDAEMVRLLRD--AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 323 -NPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAA 364
            +P         G   L  A+      + R L        E      +P    + 
Sbjct: 216 ADPTA---RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (279), Expect = 4e-28
 Identities = 51/247 (20%), Positives = 77/247 (31%), Gaps = 42/247 (17%)

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY--SANNDGKTPLYMAAESRSSDMVLAL 206
              + +TALH AV H++   +  L      + Y    N+ G+T L++AA    +  V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 207 LENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKE------------TDQ 254
                 V      G TALH A         A   LL+ + +  ++            T  
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAH-TCA-CVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNA 313
               P    +                       D        + D   T LH+A    +A
Sbjct: 123 TSHAPAAVDSQPN--------PENEEEPRDE--DWRLQLEAENYDGH-TPLHVAVIHKDA 171

Query: 314 EIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHV 361
           E+V  +     +  +     G   LH AV      V   L+            G TPL  
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

Query: 362 LAAVRRN 368
             A+ R 
Sbjct: 232 --ALLRP 236

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (278), Expect = 5e-28
 Identities = 36/225 (16%), Positives = 66/225 (29%), Gaps = 25/225 (11%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           V      G T LH+A +         L++       +  +               +    
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT----PDTSHA 126

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
            A  ++  +   +              + N DG TPL++A   + ++MV  L +    ++
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 215 HEGPN-GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR 273
              P  G+T LH A             LL+   +        G TP+  A          
Sbjct: 186 KPEPTCGRTPLHLAVEA-QAASVL-ELLLKAGAD-PTARMYGGRTPLGSALL-------- 234

Query: 274 FYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVD 317
              N     LL      A       D+  +    +    +++  D
Sbjct: 235 -RPNPILARLLRA--HGAPEPEDGGDKL-SPCSSSGSDSDSDNRD 275

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.0 bits (206), Expect = 4e-18
 Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 41/181 (22%)

Query: 59  TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQ----VNAK---GDTPLHVAAK 111
           T  T +    ++     + N   E                   + A+   G TPLHVA  
Sbjct: 120 TPDTSHAPAAVDS----QPNPENEEEP--------RDEDWRLQLEAENYDGHTPLHVAVI 167

Query: 112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKI 171
              + +V  L +                GA   + K       T LH AV  +   V+++
Sbjct: 168 HKDAEMVRLLRDA---------------GA--DLNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 172 LTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229
           L K   DP    +    G+TPL  A    +  +   L  +      +G +  +   ++  
Sbjct: 211 LLKAGADPT---ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS 267

Query: 230 K 230
            
Sbjct: 268 D 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 19/109 (17%)

Query: 251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLET--DQSASNIADKDRKMTALHLAA 308
              + G T +H A           + +   ++ LL         ++ +   + TALHLAA
Sbjct: 4   YVTEDGDTALHLAV---------IHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAA 53

Query: 309 GQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEG 351
             G A  V+ + +         +  G   LH A           L+   
Sbjct: 54  ILGEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPR 101

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  137 bits (347), Expect = 2e-38
 Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 46/271 (16%)

Query: 97  QVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEK 153
            +          +  A ++G       LVE                G     ++  + E 
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEA---------------GYD---VRQPDKEN 42

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
            T LH A  +  +D+VK    +         +   TPL+ A       MV+ L++     
Sbjct: 43  VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

Query: 214 SHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
           S     G + +H AA      +V      L+ K ++ +   DQ G TP+ +AAY      
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIV----AYLIAKGQD-VDMMDQNGMTPLMWAAYRT---- 153

Query: 272 NRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330
                +     LLL    + S N+ DK  K TALH A   GN  ++  ++          
Sbjct: 154 ----HSVDPTRLLLT--FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-Q 206

Query: 331 DNRGWNFLHYAV------VTRSLINEGDAMG 355
           + +G + L  A       +   L     A G
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  101 bits (254), Expect = 6e-25
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 31/202 (15%)

Query: 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKL 241
             ++     +  A +    +    L+E    V        T LH AA+   + D   +  
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRI-DLV-KYY 61

Query: 242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRK 300
           + K   + +       TP+H+A            G+   V  L++    A  ++ D +  
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATR---------QGHLSMVVQLMK--YGADPSLIDGEGC 110

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV-------VTRSLINEG-- 351
            + +HLAA  G+  IV  +I+K  +  +++D  G   L +A         TR L+     
Sbjct: 111 -SCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 352 -----DAMGNTPLHVLAAVRRN 368
                    NT LH  A +  N
Sbjct: 169 VNLGDKYHKNTALH-WAVLAGN 189

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  138 bits (349), Expect = 2e-37
 Identities = 57/291 (19%), Positives = 99/291 (34%), Gaps = 68/291 (23%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
                      +HVAA+ G +  V  L+E                G +     + N    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET---------------GVS---PTIQNRFGC 54

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           TALH A     VD  K L      +   +   G+ P+++A  +  +D+V+AL+E +    
Sbjct: 55  TALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKE-- 109

Query: 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
                G+          +          E  E         G T +H+    G  ++   
Sbjct: 110 ----RGQMPESLLNECDE---------REVNEIGSHVKHCKGQTALHWCVGLGPEYLE-- 154

Query: 275 YGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECY----EL 329
                 + +L++    AS    DK  + T L  A    N E +D ++   P       + 
Sbjct: 155 -----MIKILVQ--LGASPTAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 330 VDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRRN 368
            + +G + LH+A+      V    +      N  D     PL++  +VR  
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL--SVRAA 255

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  131 bits (331), Expect = 9e-35
 Identities = 36/301 (11%), Positives = 77/301 (25%), Gaps = 75/301 (24%)

Query: 98  VNAK-GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
            +   G  P+H+A     + +V  LVE A                               
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVALVEGA------------------------KERGQMP 114

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE--SRSSDMVLALLENSTSVS 214
                     +V +I +          +  G+T L+          +M+  L++   S +
Sbjct: 115 ESLLNECDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167

Query: 215 HEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
            +    +T L  A      + +D  +  +  K    +   ++ G + +H+A         
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL------- 220

Query: 273 RFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYEL-- 329
                       +E       N+ D +     L+L+       +   ++ K         
Sbjct: 221 --INWEDVAMRFVE--MGIDVNMEDNEHT-VPLYLSVRAAMVLLTKELLQKTDVFLIQAC 275

Query: 330 ----------VDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRR 367
                           +F+  A       V + L             G          ++
Sbjct: 276 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVK--RKKK 333

Query: 368 N 368
            
Sbjct: 334 A 334

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  113 bits (285), Expect = 2e-28
 Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 54/237 (22%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
           +L+Q      AK    +TPL  A +F +   +  +++                      +
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKS----------SLR---L 204

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVL 204
              N + N+ LH A+     DV     +   D +     +N+   PLY++  +    +  
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN---MEDNEHTVPLYLSVRAAMVLLTK 261

Query: 205 ALLE-------------NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKE 251
            LL+             N T+V  +       + AAA      +    +LL++K + +  
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP-SKQEVL--QLLQEKLDEVVR 318

Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLA 307
           +   G                          + L    SA      + R   +  ++
Sbjct: 319 SLNTGAGGAVKRKK---------KAAPAVKRMKLA--PSAPVRTRSRSRA-RSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 240 KLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKD 298
            + +  +    ++D      IH AA           G    V  L+E     S  I ++ 
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAAR---------KGQTDEVRRLIE--TGVSPTIQNRF 52

Query: 299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEGD 352
              TALHLA   G  +    + S            G   +H AV      +  +L+    
Sbjct: 53  -GCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108

Query: 353 AMGNTPLHVLA 363
             G  P  +L 
Sbjct: 109 ERGQMPESLLN 119

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  131 bits (332), Expect = 3e-36
 Identities = 51/245 (20%), Positives = 95/245 (38%), Gaps = 34/245 (13%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
            + PLH A        V  L             L S   +    +   + +    LH +V
Sbjct: 2   SNYPLHQACMENEFFKVQEL-------------LHSK-PSL---LLQKDQDGRIPLHWSV 44

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS--VSHEG 217
             +  ++   L  +  + +     ++ G TP ++A    + ++V +L +      ++   
Sbjct: 45  SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT 104

Query: 218 PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
             G T LH A  K    + + + L+E   + ++  D++   P+H AA           G+
Sbjct: 105 NQGVTCLHLAVGK-KWFEVS-QFLIENGAS-VRIKDKFNQIPLHRAAS---------VGS 152

Query: 278 YGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNF 337
              + LL    +SA N  DK    T L  A  +G+ +    ++ K    Y+LVDN+G   
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211

Query: 338 LHYAV 342
              A+
Sbjct: 212 EDVAL 216

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  122 bits (308), Expect = 9e-33
 Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 40/231 (17%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           +  K   G  PLH +  F    I +FL+ +                    +    ++   
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSK---------------MENVNLDDYPDDSGW 73

Query: 155 TALHEAVCHKNVDVVKIL----TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210
           T  H A    N++VVK L     K D +      N G T L++A   +  ++   L+EN 
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPLKPDLN---KITNQGVTCLHLAVGKKWFEVSQFLIENG 130

Query: 211 TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW 270
            SV  +    +  LH AA    L       L    ++ +   D+ GWTP+ +A       
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSL-KLI-ELLCGLGKSAVNWQDKQGWTPLFHALA----- 183

Query: 271 INRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
                G+     LL+E   +  ++ D      A  +A    N ++    ++
Sbjct: 184 ----EGHGDAAVLLVEKYGAEYDLVDNKGA-KAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 33/166 (19%)

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
               LH A M+ +       +LL  K +L+ + DQ G  P+H++           +  + 
Sbjct: 2   SNYPLHQACMENEFFKVQ--ELLHSKPSLLLQKDQDGRIPLHWSVS---------FQAHE 50

Query: 280 TVNLLLETDQSASNIADKDRK----MTALHLAAGQGNAEIVDAIISKNPECY-ELVDNRG 334
             + LL   +   N+   D       T  H+A   GN E+V ++  +  +     + N+G
Sbjct: 51  ITSFLL--SKME-NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG 107

Query: 335 WNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRRN 368
              LH AV      V++ LI         D     PLH   A    
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR--AASVG 151

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  133 bits (336), Expect = 1e-35
 Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 75/309 (24%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
           LLLQ    V+AK   G  PLH A  +GH  +   L++                GA    +
Sbjct: 76  LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH---------------GA---CV 117

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVL 204
              +  + T LHEA     V+V  +L     DP      N  GK+ + MA      + + 
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT---LVNCHGKSAVDMAPTPELRERLT 174

Query: 205 ALLENST---------------------SVSHEGPNGKTALHAAAMK--FDLVDTALRKL 241
              +  +                         +  + +TALH A           A   L
Sbjct: 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA-ELL 233

Query: 242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRK 300
           L K  N + E ++   TP+H AA            +   + +L +    A  N  D   +
Sbjct: 234 LRKGAN-VNEKNKDFMTPLHVAAERA---------HNDVMEVLHK--HGAKMNALDSLGQ 281

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV-VTRSLINEG----DAMG 355
            TALH AA  G+ +    ++S   +   ++  +G+          + +++E      +  
Sbjct: 282 -TALHRAALAGHLQTCRLLLSYGSDP-SIISLQGFTAAQMGNEAVQQILSESTPMRTSDV 339

Query: 356 NTPLHVLAA 364
           +  L   A+
Sbjct: 340 DYRLL-EAS 347

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  130 bits (330), Expect = 8e-35
 Identities = 54/304 (17%), Positives = 94/304 (30%), Gaps = 62/304 (20%)

Query: 98  VNAKGD---TPLHVAAKFGHS-GIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEK 153
               G+     L  AA+ G+   ++  L                           ++  K
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPL---------------NV---NCHASDGRK 58

Query: 154 NTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           +T LH A  +  V +V++L +   D     + +  G  PL+ A      ++   LL++  
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVH---AKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
            V+       T LH AA K + V+     LL    +     + +G + +  A    +   
Sbjct: 116 CVNAMDLWQFTPLHEAASK-NRVEVC-SLLLSHGAD-PTLVNCHGKSAVDMAPTPELRER 172

Query: 272 NRF------------YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG---NAEIV 316
             +              +   V   L  +    N        TALH A         ++ 
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALE--IINFKQPQSHETALHCAVASLHPKRKQVA 230

Query: 317 DAIISKNPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAA 364
           + ++ K        +      LH A       V   L       N  D++G T LH   A
Sbjct: 231 ELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR--A 287

Query: 365 VRRN 368
               
Sbjct: 288 ALAG 291

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.9 bits (250), Expect = 1e-23
 Identities = 48/238 (20%), Positives = 82/238 (34%), Gaps = 47/238 (19%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVER------AKLPQHENEELESGVG 140
           LLL            G + + +A        +T+  +       A+       +    + 
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201

Query: 141 AARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKE--DPDYRYSANNDGKTPLYMAA 195
                         TALH AV     K   V ++L ++  + + +   N D  TPL++AA
Sbjct: 202 II---NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK---NKDFMTPLHVAA 255

Query: 196 ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQY 255
           E   +D++  L ++   ++     G+TALH AA+   L  T  R LL    +        
Sbjct: 256 ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHL-QTC-RLLLSYGSD-PSIISLQ 312

Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSA-SNIADKDRKMTALHLAAGQGN 312
           G+T                      V  +L   +S     +D D     L  A+  G+
Sbjct: 313 GFTAAQMGNE--------------AVQQILS--ESTPMRTSDVD---YRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.5 bits (223), Expect = 5e-20
 Identities = 39/199 (19%), Positives = 59/199 (29%), Gaps = 47/199 (23%)

Query: 185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEK 244
             GK+ L              L + S      G   K  L  AA   +        LL  
Sbjct: 2   EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLM--ALLTP 46

Query: 245 KENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTA 303
                  +D    TP+H AA          Y     V LLL+    A  +  DK   +  
Sbjct: 47  LNVNCHASDGRKSTPLHLAAG---------YNRVRIVQLLLQ--HGADVHAKDKG-GLVP 94

Query: 304 LHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLI------N 349
           LH A   G+ E+ + ++           +D   +  LH A       V   L+       
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNA---MDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151

Query: 350 EGDAMGNTPLHVLAAVRRN 368
             +  G + + +  A    
Sbjct: 152 LVNCHGKSAVDM--APTPE 168

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 19/107 (17%)

Query: 276 GNYG-TVNLLLETDQSASNIADKDRKMTALHLAAGQGNA-EIVDAIISKNPECYELVDNR 333
           G +G +   L   D SA  +   + K   L  AA  GN  +++  +   N  C    D R
Sbjct: 1   GEFGKSALDLA--DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGR 57

Query: 334 GWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRRN 368
               LH A       + + L+      +  D  G  PLH   A    
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN--ACSYG 102

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (327), Expect = 2e-35
 Identities = 63/272 (23%), Positives = 103/272 (37%), Gaps = 52/272 (19%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
                  GDTPLH+A   G+   V  LV      Q          G     + + NN + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNL--FQQG---------GRE---LDIYNNLRQ 47

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN--- 209
           T LH AV      VV++L      P    + +  G+T  ++A E RS   + ALL++   
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGASPM---ALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 210 -STSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGM 268
            +  +     +G TALH A    +  +T  + LLE+  ++     + G +P+ +A     
Sbjct: 105 GTLDLEARNYDGLTALHVAVNT-ECQETV-QLLLERGADIDAVDIKSGRSPLIHAVE--- 159

Query: 269 YWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK--NPE 325
                   +   V LLL+    A+ N        +ALH A+G+G   +V  ++    +  
Sbjct: 160 ------NNSLSMVQLLLQ--HGANVNAQMYSGS-SALHSASGRGLLPLVRTLVRSGADS- 209

Query: 326 CYELVDNRGWNFLHYAV------VTRSLINEG 351
              L +      L  A       + R      
Sbjct: 210 --SLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  120 bits (303), Expect = 5e-32
 Identities = 53/241 (21%), Positives = 85/241 (35%), Gaps = 41/241 (17%)

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKE------DPDYRYSANNDGKTPLYMAAESRSSDMV 203
           + + +T LH AV   N+  V  L         + D     NN  +TPL++A  +    +V
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD---IYNNLRQTPLHLAVITTLPSVV 62

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEK---KENLIKETDQYGWTPI 260
             L+    S      +G+TA H A           R LL+        ++  +  G T +
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEH-RSPTCL-RALLDSAAPGTLDLEARNYDGLTAL 120

Query: 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAI 319
           H A                TV LLLE  + A  +  D     + L  A    +  +V  +
Sbjct: 121 HVAVN---------TECQETVQLLLE--RGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

Query: 320 ISKNPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRR 367
           +             G + LH A       + R+L+      +  +   +TPL V  A  R
Sbjct: 170 LQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV--ARSR 226

Query: 368 N 368
            
Sbjct: 227 R 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 36/142 (25%)

Query: 248 LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS---NIADKDRKMTAL 304
           +    D+ G TP+H A            GN   V+ L+   Q      +I +  R+ T L
Sbjct: 1   MATRADEDGDTPLHIAVV---------QGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPL 50

Query: 305 HLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLI-------- 348
           HLA       +V  +++   +P     +D  G    H A         R+L+        
Sbjct: 51  HLAVITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107

Query: 349 --NEGDAMGNTPLHVLAAVRRN 368
                +  G T LHV  AV   
Sbjct: 108 DLEARNYDGLTALHV--AVNTE 127

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  131 bits (333), Expect = 4e-35
 Identities = 55/377 (14%), Positives = 105/377 (27%), Gaps = 67/377 (17%)

Query: 22  TGEISQSQMDPKFFKAAADGNVEPFKDMAR--EKIESLLTAKTRNTILHINIISKERENV 79
              +   + + K  ++         +       K +                 +      
Sbjct: 18  MPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDF-- 75

Query: 80  STEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139
               + +       +  +   +    LH  A  G   I   +                  
Sbjct: 76  ----LGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRE--------------- 115

Query: 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA-------NNDGKTPLY 192
                   +      T LH    + + +  + L   +     +A       + D  TPL 
Sbjct: 116 SVN----IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171

Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL--IK 250
           +A  +R   +V  L++     +    + ++ALH AA            +L   +    I+
Sbjct: 172 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMM-VYMLNSTKLKGDIE 229

Query: 251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE-------TDQSASNIADKDRKMTA 303
           E D+ G T +   A++             +  LL+E          +  +      + TA
Sbjct: 230 ELDRNGMTALMIVAHNE------GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR-TA 282

Query: 304 LHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI------NEG 351
           LH AA   N  IV  ++ +     +  D  G   +  A       V   LI         
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV 342

Query: 352 DAMGNTPLHVLAAVRRN 368
           DA  +T   +  A   N
Sbjct: 343 DATDHTARQL--AQANN 357

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (290), Expect = 4e-29
 Identities = 64/273 (23%), Positives = 103/273 (37%), Gaps = 59/273 (21%)

Query: 77  ENVSTEFVEEILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQ 129
            N S E  E+++       +     VNA     +TPL +A       +V +L++      
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA----- 188

Query: 130 HENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKIL-----TKEDPDYRYSAN 184
                     GA      + N  + +ALH+A  +++  ++  +      K D +     +
Sbjct: 189 ----------GA---DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE---ELD 232

Query: 185 NDGKTPLYMAAESRSSDMVLA---LLENSTSVSHEGP--------NGKTALHAAAMKFDL 233
            +G T L + A +   D V +   L+E    V ++G          G+TALH AA     
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV-SN 291

Query: 234 VDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS- 292
           +    + L+ +K +   + D+ G TPI  AA           G    V  L+   Q AS 
Sbjct: 292 MPIV-KYLVGEKGSNKDKQDEDGKTPIMLAAQ---------EGRIEVVMYLI--QQGASV 339

Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPE 325
              D     TA  LA    +  IVD      PE
Sbjct: 340 EAVDATDH-TARQLAQANNHHNIVDIFDRCRPE 371

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  127 bits (322), Expect = 1e-34
 Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 40/249 (16%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
              +     +PLH AA+ GH  I   LV+                GA    I   + ++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQA---------------GAN---IDTCSEDQR 45

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN-STSV 213
           T L EA  + +++ VK L K         + +G T L++AA+    ++V  LL N    V
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

Query: 214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR 273
           + +   G T +  A      VD   + LL K  + I   D      +H+AA+        
Sbjct: 105 NCQDDGGWTPMIWATEY-KHVDLV-KLLLSKGSD-INIRDNEENICLHWAAF-------- 153

Query: 274 FYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
             G      +LL        +  +     + LH+AA +   + V   +S++ +   L + 
Sbjct: 154 -SGCVDIAEILLA--AKCDLHAVNIHGD-SPLHIAARENRYDCVVLFLSRDSD-VTLKNK 208

Query: 333 RGWNFLHYA 341
            G   L  A
Sbjct: 209 EGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  121 bits (307), Expect = 1e-32
 Identities = 50/233 (21%), Positives = 86/233 (36%), Gaps = 43/233 (18%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           ++       TPL  AA+  H   V +L++                GA    +   + E +
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKA---------------GAL---VDPKDAEGS 78

Query: 155 TALHEAVCHKNVDVVKILTK---EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           T LH A    + +VV+ L      D +     ++ G TP+  A E +  D+V  LL   +
Sbjct: 79  TCLHLAAKKGHYEVVQYLLSNGQMDVN---CQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
            ++         LH AA    + D A   LL  K + +   + +G +P+H AA       
Sbjct: 136 DINIRDNEENICLHWAAFSGCV-DIA-EILLAAKCD-LHAVNIHGDSPLHIAAR------ 186

Query: 272 NRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
                 Y  V L L   + +   + +K+ + T L  A+          +    
Sbjct: 187 ---ENRYDCVVLFLS--RDSDVTLKNKEGE-TPLQCASLNSQVWSALQMSKAL 233

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 21/84 (25%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           ++A    GD+PLH+AA+      V   + R                +    + + N E  
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSR---------------DSD---VTLKNKEGE 211

Query: 155 TALHEAVCHKNVDVVKILTKEDPD 178
           T L  A  +  V     ++K   D
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQD 235

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  128 bits (325), Expect = 2e-34
 Identities = 55/270 (20%), Positives = 88/270 (32%), Gaps = 70/270 (25%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           +N     G T LH A    +  +V FLVE                GA    I   +NE  
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVEN---------------GAN---INQPDNEGW 107

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
             LH A     +D+ + L  +        + N++G TPL +A E    +++   +     
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVG---AVNSEGDTPLDIAEEEAMEELLQNEV----- 159

Query: 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
            + +G + + A      +  L D    + L           + G T +H AA        
Sbjct: 160 -NRQGVDIEAARKEEE-RIMLRDAR--QWLNSGHINDVRHAKSGGTALHVAAA------- 208

Query: 273 RFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD 331
              G    + LL++       NI D D   T LH AA  G  E    ++    +      
Sbjct: 209 --KGYTEVLKLLIQ--ARYDVNIKDYDGW-TPLHAAAHWGKEEACRILVENLCD------ 257

Query: 332 NRGWNFLHYAVVTRSLINEGDAMGNTPLHV 361
                           +   + +G T   V
Sbjct: 258 ----------------MEAVNKVGQTAFDV 271

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (270), Expect = 8e-27
 Identities = 46/225 (20%), Positives = 76/225 (33%), Gaps = 24/225 (10%)

Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
           +KM + ++           +   ++    +    +     D       A  S  ++ VL 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK--VKFDDGAVFLAACSSGDTEEVLR 58

Query: 206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY 265
           LLE    +++   +G TALH A    D VD   + L+E   N I + D  GW P+H AA 
Sbjct: 59  LLERGADINYANVDGLTALHQAC-IDDNVDMV-KFLVENGAN-INQPDNEGWIPLHAAAS 115

Query: 266 HGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNP 324
                     G       L+   Q A     + +   T L +A  +   E++   +++  
Sbjct: 116 ---------CGYLDIAEYLIS--QGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQG 163

Query: 325 ECYELVDNRGWNFLHYAVVT-----RSLINEGDAMGNTPLHVLAA 364
              E         +                     G T LHV AA
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV-AA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (270), Expect = 1e-26
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 44/230 (19%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           +N     G  PLH AA  G+  I  +L+ +               GA    +   N+E +
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQ---------------GAH---VGAVNSEGD 140

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           T L  A      ++++               D +            D    L     +  
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNSGHINDV 193

Query: 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
               +G TALH AA K    +   + L++ + + +   D  GWTP+H AA+         
Sbjct: 194 RHAKSGGTALHVAAAK-GYTEVL-KLLIQARYD-VNIKDYDGWTPLHAAAH--------- 241

Query: 275 YGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
           +G      +L+E          +K  + TA  +A       + +    +N
Sbjct: 242 WGKEEACRILVE--NLCDMEAVNKVGQ-TAFDVADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.8 bits (159), Expect = 7e-12
 Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 27/130 (20%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
                  G T LHVAA  G++ ++  L++                      + + + +  
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQA---------------RYD---VNIKDYDGW 233

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
           T LH A      +  +IL +   D +   + N  G+T   +A E     +     + +  
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDME---AVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

Query: 213 VSHEGPNGKT 222
            S E    K+
Sbjct: 291 HS-EKREKKS 299

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (323), Expect = 2e-34
 Identities = 55/262 (20%), Positives = 90/262 (34%), Gaps = 49/262 (18%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
                +P+H AA  GH   +  L+ +               G A   + +   +  + LH
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQ---------------GWA---VNIITADHVSPLH 97

Query: 159 EAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           EA    ++  VKIL K     +       D  TPL+ A  S S D V  LL++  SV  E
Sbjct: 98  EACLGGHLSCVKILLKHGAQVN---GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE 154

Query: 217 GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
             +  + +H AA +   V+     L+    N I     +  TP++ A             
Sbjct: 155 S-DLASPIHEAARR-GHVECV-NSLIAYGGN-IDHKISHLGTPLYLACE---------NQ 201

Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRG 334
               V  LLE    A     K +  + LH      + E+   ++    + +     +  G
Sbjct: 202 QRACVKKLLE--SGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQA---KNAEG 255

Query: 335 WNFLHYA-----VVTRSLINEG 351
              +        +    L  EG
Sbjct: 256 KRPVELVPPESPLAQLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  119 bits (300), Expect = 4e-31
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 44/225 (19%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VN       +PLH A   GH   V  L++                GA    +     + +
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLKH---------------GAQ---VNGVTADWH 126

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
           T L  A    + D V +L +            +D  +P++ AA     + V +L+    +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYGGN 182

Query: 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
           + H+  +  T L+ A           +KLLE   ++     +   +P+H           
Sbjct: 183 IDHKISHLGTPLYLACEN-QQRACV-KKLLESGADV--NQGKGQDSPLHAVVRT------ 232

Query: 273 RFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIV 316
               +     LL+  D  A     + + K   + L   +     +
Sbjct: 233 ---ASEELACLLM--DFGADTQAKNAEGK-RPVELVPPESPLAQL 271

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  126 bits (318), Expect = 1e-33
 Identities = 61/302 (20%), Positives = 98/302 (32%), Gaps = 71/302 (23%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
             + +  L  A +     +V  L+E                GA   +         T LH
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG---------------GA--NVNFQEEEGGWTPLH 44

Query: 159 EAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
            AV     D+V++L +   DP        +G TP  +AA + S  ++   L     V+  
Sbjct: 45  NAVQMSREDIVELLLRHGADPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 217 GPNGKTALHAAAMKFDLVDTALRKLL----------EKKENLIKETDQYGWTPIHYAAYH 266
              G TA   AA+    V     K L           K +   +   + G T +  AA  
Sbjct: 102 DFYGFTAFMEAAVY-GKVKAL--KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE- 157

Query: 267 GMYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGN----AEIVDAIIS 321
                    G+   + +LL  D+  +++   D     AL  A    +      I   ++ 
Sbjct: 158 --------KGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 322 K--NPECYELVDNRGWNFLHYAV------VTRSL-------INEGDAMGNTPLHVLAAVR 366
              +         RG   L  AV      + + L       IN+ D+ G T L +  AV 
Sbjct: 208 HGADVNV---RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL--AVE 262

Query: 367 RN 368
             
Sbjct: 263 LK 264

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  123 bits (312), Expect = 9e-33
 Identities = 51/246 (20%), Positives = 82/246 (33%), Gaps = 56/246 (22%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
              +   G TP  +AA  G   ++   + +               GA    +   +    
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSK---------------GA---DVNECDFYGF 106

Query: 155 TALHEAVCHKNVDVVKILTK---------EDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
           TA  EA  +  V  +K L K         +  + +      G T L  AAE    +++  
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 206 LLENSTSVSHEGPN-------GKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYG 256
           LL         G +       G+ AL  A +      V+     LL+   + +    + G
Sbjct: 167 LL------DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERG 219

Query: 257 WTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
            TP+  A             + G V  LLE +    N  D D K TAL LA      +I 
Sbjct: 220 KTPLILAVE---------KKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIA 269

Query: 317 DAIISK 322
           + +  +
Sbjct: 270 ELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  101 bits (253), Expect = 2e-24
 Identities = 48/212 (22%), Positives = 69/212 (32%), Gaps = 45/212 (21%)

Query: 183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN-GKTALHAAAMK--FDLVDTALR 239
           A  +    L  A ++   D+V  LLE   +V+ +    G T LH A      D+V     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----E 56

Query: 240 KLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKD 298
            LL    +      + G TP   AA           G+   + L L   + A  N  D  
Sbjct: 57  LLLRHGAD-PVLRKKNGATPFLLAAI---------AGSVKLLKLFLS--KGADVNECDFY 104

Query: 299 RKMTALHLAAGQGNAEIVDAIIS---------KNPECYELVDNRGWNFLHYAV------V 343
              TA   AA  G  + +  +           K  E  E +   G   L  A       V
Sbjct: 105 -GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 344 TRSLI-------NEGDAMGNTPLHVLAAVRRN 368
            + L+       N  D MG   L    A+  +
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIH--ALLSS 193

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 36/203 (17%), Positives = 56/203 (27%), Gaps = 70/203 (34%)

Query: 90  KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT 149
           K      ++   G T L  AA+ GH  ++  L+                +GA    +   
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILL--------------DEMGAD---VNAC 178

Query: 150 NNEKNTALHEAVCHKNVD----VVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMV 203
           +N    AL  A+   +      +  +L     D +        GKTPL +A E +   +V
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN---VRGERGKTPLILAVEKKHLGLV 235

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA 263
             LL        E                                I +TD  G T +  A
Sbjct: 236 QRLL------EQEHIE-----------------------------INDTDSDGKTALLLA 260

Query: 264 AYHGMYWINRFYGNYGTVNLLLE 286
                              LL +
Sbjct: 261 VEL---------KLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.6 bits (130), Expect = 3e-08
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 28/103 (27%)

Query: 77  ENVSTEFVEEILEKCPSLLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQ 129
            +     VE I      LLL     VN +   G TPL +A +  H G+V  L+E+     
Sbjct: 191 LSSDDSDVEAITH----LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE---- 242

Query: 130 HENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKIL 172
                           I  T+++  TAL  AV  K   + ++L
Sbjct: 243 ----------HIE---INDTDSDGKTALLLAVELKLKKIAELL 272

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (312), Expect = 2e-33
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 34/245 (13%)

Query: 80  STEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139
           +   + + + +  SL  Q +  G+T LH+AA++  S     L+E                
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--------------- 47

Query: 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRS 199
            A      + +N   T LH AV      V +IL +       +  +DG TPL +AA    
Sbjct: 48  SAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 104

Query: 200 SDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTP 259
             M+  L+ +   V+     GK+ALH AA   + VD A   LL+   N     +    TP
Sbjct: 105 EGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAA-VVLLKNGAN-KDMQNNREETP 161

Query: 260 IHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDA 318
           +  AA           G+Y T  +LL+    A+ +I D   +     +A  + + +IV  
Sbjct: 162 LFLAAR---------EGSYETAKVLLD--HFANRDITDHMDR-LPRDIAQERMHHDIVRL 209

Query: 319 IISKN 323
           +   N
Sbjct: 210 LDEYN 214

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  109 bits (276), Expect = 3e-28
 Identities = 47/217 (21%), Positives = 72/217 (33%), Gaps = 30/217 (13%)

Query: 165 NVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTAL 224
              V+     +        +  G+T L++AA    SD    LLE S   + +   G+T L
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62

Query: 225 HAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLL 284
           HAA    D      + L+  +   +      G TP+  AA              G +  L
Sbjct: 63  HAAVSA-DAQGVF-QILIRNRATDLDARMHDGTTPLILAAR---------LAVEGMLEDL 111

Query: 285 LETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV- 342
           +     A  N  D   K +ALH AA   N +    ++          +NR    L  A  
Sbjct: 112 IN--SHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAR 167

Query: 343 -----VTRSLI------NEGDAMGNTPLHVLAAVRRN 368
                  + L+      +  D M   P  +  A  R 
Sbjct: 168 EGSYETAKVLLDHFANRDITDHMDRLPRDI--AQERM 202

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (312), Expect = 2e-33
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 41/255 (16%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
           Q+   GD+ LH+A       +   ++ +  +             A    +   NN + T 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQ--VKGD---------LAF---LNFQNNLQQTP 48

Query: 157 LHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           LH AV     ++ + L     DP+     +  G TPL++A E      V  L ++ T+  
Sbjct: 49  LHLAVITNQPEIAEALLGAGCDPE---LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105

Query: 215 HEGP------NGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGM 268
                     NG T LH A++    +      L+    ++  +    G T +H A     
Sbjct: 106 LHSILKATNYNGHTCLHLASIH-GYLGIV-ELLVSLGADVNAQEPCNGRTALHLAVD--- 160

Query: 269 YWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECY 327
                   N   V+LLL+    A  N        +   L  G+ +  I   +     E  
Sbjct: 161 ------LQNPDLVSLLLK--CGADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQLTLENL 211

Query: 328 ELVDNRGWNFLHYAV 342
           + +     +   Y  
Sbjct: 212 Q-MLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.0 bits (193), Expect = 9e-17
 Identities = 41/176 (23%), Positives = 60/176 (34%), Gaps = 38/176 (21%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKC--PSLLLQVNAK---GDTPLHVAAKFGHSGIV 118
           NT LH+       E      V  + + C  P L   + A    G T LH+A+  G+ GIV
Sbjct: 79  NTPLHLAC-----EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 119 TFLVERAKLPQHENEELESGVGA---ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE 175
             LV                 GA   A+           TALH AV  +N D+V +L K 
Sbjct: 134 ELLVSL---------------GADVNAQ-----EPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 176 --DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229
             D +        G +P  +     S+ +   L + +       P  +        
Sbjct: 174 GADVN---RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 226

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.7 bits (169), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 34/140 (24%)

Query: 250 KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAA 308
           ++  + G + +H A  H              +  +      A  N  +  ++ T LHLA 
Sbjct: 2   QQLTEDGDSFLHLAIIH-----EEKALTMEVIRQVK--GDLAFLNFQNNLQQ-TPLHLAV 53

Query: 309 GQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------------------VTRSLI 348
                EI +A++    +P   EL D RG   LH A                      S++
Sbjct: 54  ITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

Query: 349 NEGDAMGNTPLHVLAAVRRN 368
              +  G+T LH+  A    
Sbjct: 111 KATNYNGHTCLHL--ASIHG 128

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 27/118 (22%)

Query: 94  LLLQ----VNAK----GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM 145
           LL+     VNA+    G T LH+A    +  +V+ L++                GA    
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---------------GAD--- 176

Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
           +     +  +         +  + + L +   +       + +       ES  ++  
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE-NLQMLPESEDEESYDTESEFTEFT 233

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  124 bits (313), Expect = 5e-33
 Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 75/320 (23%)

Query: 94  LLLQ---VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
             L           G +  + A    +  +V  L+                 GA      
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA---------------GAL---KN 58

Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
           +  NE    LH+A   ++  +VKIL     D       ++ G T LY A +S +   V  
Sbjct: 59  LLENE--FPLHQAATLEDTKIVKILLFSGLDDS---QFDDKGNTALYYAVDSGNMQTVKL 113

Query: 206 LLENSTSVSHEGPNG-KTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA 264
            ++ +  +   G  G KT+ + A M  + V       L +  +          + IH   
Sbjct: 114 FVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIV-SYFLSEIPS--TFDLAILLSCIHITI 169

Query: 265 YHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
                      G+   + LLL  D   S N  +    +  + LA    + E++ A+   +
Sbjct: 170 K---------NGHVDMMILLL--DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

Query: 324 PECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRRNEFY 371
                 + +         V      + + +I             +  +      + N+  
Sbjct: 219 IN----IYSA----NLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV-----KNNKLD 265

Query: 372 DVMIRNTQVNYDAVN--KQN 389
           +++ +N ++    VN  K+N
Sbjct: 266 EIISKNKELRLMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.6 bits (192), Expect = 3e-16
 Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 36/195 (18%)

Query: 187 GKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE 246
           G     +          L    +S        +G +A + A    + V      LL    
Sbjct: 1   GMDLSRINTWK---SKQLKSFLSSKDTFKADVHGHSASYYAIAD-NNVRLV-CTLLNAGA 55

Query: 247 NLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALH 305
                 +     P+H AA            +   V +LL        +  D     TAL+
Sbjct: 56  L-KNLLE--NEFPLHQAAT---------LEDTKIVKILL--FSGLDDSQFDDK-GNTALY 100

Query: 306 LAAGQGNAEIVDAIISKNPECYELVDNRGWNF-LHYAV------VTRSLINEG-----DA 353
            A   GN + V   + KN          GW    ++AV      +    ++E       A
Sbjct: 101 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159

Query: 354 MGNTPLHVLAAVRRN 368
           +  + +H+   ++  
Sbjct: 160 ILLSCIHI--TIKNG 172

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 2e-32
 Identities = 68/272 (25%), Positives = 108/272 (39%), Gaps = 48/272 (17%)

Query: 64  NTILHI--------NIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHS 115
            T L I           + E E  +   + + + +  SL  Q +  G+T LH+AA++  S
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 116 GIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK- 174
                L+E                 A      + +N   T LH AV      V +IL + 
Sbjct: 71  DAAKRLLEA---------------SAD---ANIQDNMGRTPLHAAVSADAQGVFQILIRN 112

Query: 175 --EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFD 232
              D D R    +DG TPL +AA      M+  L+ +   V+     GK+ALH AA   +
Sbjct: 113 RATDLDAR---MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-N 168

Query: 233 LVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS 292
            VD A   LL+   N     +    TP+  AA           G+Y T  +LL+    A+
Sbjct: 169 NVDAA-VVLLKNGAN-KDMQNNREETPLFLAAR---------EGSYETAKVLLD--HFAN 215

Query: 293 -NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
            +I D   +     +A  + + +IV  +  ++
Sbjct: 216 RDITDHMDR-LPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  120 bits (303), Expect = 7e-32
 Identities = 56/289 (19%), Positives = 86/289 (29%), Gaps = 75/289 (25%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VN +   G TPL +A+  G                                         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGG--------------------------------------L 24

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
              +         V+     +        +  G+T L++AA    SD    LLE S   +
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84

Query: 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
            +   G+T LHAA    D      + L+  +   +      G TP+  AA          
Sbjct: 85  IQDNMGRTPLHAAVSA-DAQGVF-QILIRNRATDLDARMHDGTTPLILAAR--------- 133

Query: 275 YGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVD 331
               G +  L+     A  N  D   K +ALH AA   N +    ++    N +     +
Sbjct: 134 LAVEGMLEDLIN--SHADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDM---QN 187

Query: 332 NRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAAVRRN 368
           NR    L  A         + L+      +  D M   P  +  A  R 
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI--AQERM 234

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  120 bits (303), Expect = 4e-32
 Identities = 38/262 (14%), Positives = 77/262 (29%), Gaps = 56/262 (21%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G   +  A           L                        I    +  +T   +  
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIE---------------EGD---IIYITDMSDTNWWKGT 53

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
                 ++      +             PL+ AA+  +   +   L+N   V+     G 
Sbjct: 54  SKGRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS 107

Query: 222 TALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
           TAL+ A      D+V+     L  +    + + ++ G T +H AA+          G   
Sbjct: 108 TALYWACHGGHKDIVEM----LFTQPNIELNQQNKLGDTALHAAAW---------KGYAD 154

Query: 280 TVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL 338
            V LLL   + A  ++ + ++K  A  +A     A ++      +     L +   +   
Sbjct: 155 IVQLLLA--KGARTDLRNIEKK-LAFDMATNAACASLLKKKQGTDAVR-TLSNAEDY--- 207

Query: 339 HYAVVTRSLINEGDAMGNTPLH 360
                    +++ D+      H
Sbjct: 208 ---------LDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.1 bits (245), Expect = 6e-24
 Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 38/198 (19%)

Query: 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALR 239
                G+  ++ A  +        L      + +      T       K    L+     
Sbjct: 7   KPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI----- 61

Query: 240 KLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKD 298
                  N + E  +    P+H AA           GN   +   L+       N  DK 
Sbjct: 62  -----PSNYVAEQAESIDNPLHEAAK---------RGNLSWLRECLD--NRVGVNGLDKA 105

Query: 299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI---- 348
              TAL+ A   G+ +IV+ + ++        +  G   LH A       + + L+    
Sbjct: 106 GS-TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 349 --NEGDAMGNTPLHVLAA 364
             +  +         +A 
Sbjct: 165 RTDLRNIEKKLAFD-MAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 25/138 (18%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VN     G T L+ A   GH  IV  L               +        +   N   +
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLF--------------TQPNIE---LNQQNKLGD 141

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
           TALH A      D+V++L  +    D R   N + K    MA  +  + ++         
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGARTDLR---NIEKKLAFDMATNAACASLLKKKQGTDAV 198

Query: 213 VSHEGPNGKTALHAAAMK 230
            +            + ++
Sbjct: 199 RTLSNAEDYLDDEDSDLE 216

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  113 bits (285), Expect = 7e-30
 Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 34/229 (14%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
             +    L  A +     +   L +                      +   + E NT L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDT---------------TYQ---VDEVDTEGNTPLN 44

Query: 159 EAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS-VSH 215
            AV + ++++ K L     D +     N+   +P   A     ++++  +L+++T  ++ 
Sbjct: 45  IAVHNNDIEIAKALIDRGADIN---LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101

Query: 216 EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY 275
               G  AL  AA K   +D   + LLE     I   + +G+T +  A            
Sbjct: 102 HNRYGGNALIPAAEK-GHIDNV-KLLLEDGREDIDFQNDFGYTALIEAVGLR----EGNQ 155

Query: 276 GNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
                V LL+E    A  +I D   + TA+  A  +G  EI   +   N
Sbjct: 156 LYQDIVKLLME--NGADQSIKDNSGR-TAMDYANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  103 bits (260), Expect = 3e-26
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 34/203 (16%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
             +    L  A +  +  +   L + +  V      G T L+ A    D+ + A + L++
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDI-EIA-KALID 60

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MT 302
           +  + I   +    +P  YA            G    +  +L    +  ++   +R    
Sbjct: 61  RGAD-INLQNSISDSPYLYAGA---------QGRTEILAYML--KHATPDLNKHNRYGGN 108

Query: 303 ALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL--------------- 347
           AL  AA +G+ + V  ++    E  +  ++ G+  L  AV  R                 
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 348 --INEGDAMGNTPLHVLAAVRRN 368
              +  D  G T +    A ++ 
Sbjct: 169 ADQSIKDNSGRTAMDY--ANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.7 bits (242), Expect = 9e-24
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 41/199 (20%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           V+     G+TPL++A       I   L++R               GA    I + N+  +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDR---------------GA---DINLQNSISD 73

Query: 155 TALHEAVCHKNVDVVKILTK---EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           +    A      +++  + K    D +     N  G   L  AAE    D V  LLE+  
Sbjct: 74  SPYLYAGAQGRTEILAYMLKHATPDLN---KHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

Query: 212 S-VSHEGPNGKTALHAAAMKFDLVDTAL---RKLLEKKENLIKETDQYGWTPIHYAAYHG 267
             +  +   G TAL  A    +         + L+E   +     D  G T + YA    
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQ-- 187

Query: 268 MYWINRFYGNYGTVNLLLE 286
                   G      +L +
Sbjct: 188 -------KGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTF 120
            T L   +  +E   +  + V+ ++E         + K   G T +  A + G++ I   
Sbjct: 141 YTALIEAVGLREGNQLYQDIVKLLMENGA----DQSIKDNSGRTAMDYANQKGYTEISKI 196

Query: 121 LVE 123
           L +
Sbjct: 197 LAQ 199

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (277), Expect = 5e-29
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
           + ++H+      +D +K   ++  +     +  G TPL  A+     + V  LLE     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 214 SHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
                  ++AL  A+     D+V      LLE+  + I   D  G TP+ YA        
Sbjct: 63  HILAKERESALSLASTGGYTDIV----GLLLERDVD-INIYDWNGGTPLLYAVR------ 111

Query: 272 NRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330
                +   V  LL   + A           T + LA   G  ++   I +   +     
Sbjct: 112 ---GNHVKCVEALLA--RGADLTTEADSG-YTPMDLAVALGYRKVQQVIENHILKL-FQS 164

Query: 331 DNRGW 335
           +    
Sbjct: 165 NLVPA 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  100 bits (251), Expect = 3e-25
 Identities = 32/203 (15%), Positives = 62/203 (30%), Gaps = 44/203 (21%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
               +H  A  G    +   + +               G    ++   +    T L  A 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRK---------------GD--NLVNKPDERGFTPLIWAS 44

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
               ++ V+ L +   DP        + ++ L +A+    +D+V  LLE    ++    N
Sbjct: 45  AFGEIETVRFLLEWGADPH---ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN 101

Query: 220 GKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
           G T L  A        V      LL +  + +      G+TP+  A            G 
Sbjct: 102 GGTPLLYAVRGNHVKCV----EALLARGAD-LTTEADSGYTPMDLAV---------ALGY 147

Query: 278 YGTVNLLLETDQSASNIADKDRK 300
                ++       ++I    + 
Sbjct: 148 RKVQQVIE------NHILKLFQS 164

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 96.3 bits (241), Expect = 7e-24
 Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 30/183 (16%)

Query: 81  TEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVG 140
            + ++E L K  +L+ + + +G TPL  A+ FG    V FL+E                G
Sbjct: 15  LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW---------------G 59

Query: 141 AARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESR 198
           A      +   E+ +AL  A      D+V +L +   D +     + +G TPL  A    
Sbjct: 60  AD---PHILAKERESALSLASTGGYTDIVGLLLERDVDIN---IYDWNGGTPLLYAVRGN 113

Query: 199 SSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYG 256
               V ALL     ++ E  +G T +  A       +      +++E     + +++   
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ-----QVIENHILKLFQSNLVP 168

Query: 257 WTP 259
             P
Sbjct: 169 ADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 90.2 bits (225), Expect = 1e-21
 Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 36/159 (22%)

Query: 220 GKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
              ++H  A +   D +    ++ L K +NL+ + D+ G+TP+ +A+          +G 
Sbjct: 2   DSLSIHQLAAQGELDQL----KEHLRKGDNLVNKPDERGFTPLIWASA---------FGE 48

Query: 278 YGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRG 334
             TV  LLE    A  +I  K+R  +AL LA+  G  +IV  ++ +  +   Y   D  G
Sbjct: 49  IETVRFLLE--WGADPHILAKER-ESALSLASTGGYTDIVGLLLERDVDINIY---DWNG 102

Query: 335 WNFLHYAV------VTRSLI------NEGDAMGNTPLHV 361
              L YAV         +L+            G TP+ +
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDL 141

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (276), Expect = 3e-28
 Identities = 48/243 (19%), Positives = 84/243 (34%), Gaps = 48/243 (19%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
            ++PL +AAK      ++ L     L            G     +        TALH A 
Sbjct: 3   WESPLLLAAKENDVQALSKL-----LKFE---------GCE---VHQRGAMGETALHIAA 45

Query: 162 CHKNVDVVKILTKEDPDYRYSANN----DGKTPLYMAAESRSSDMVLALLEN-------- 209
            + N++   +L +  P+  +        +G+T L++A  +++ ++V ALL          
Sbjct: 46  LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARA 105

Query: 210 -----STSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA 264
                     +    G+  L  AA      +   R L+E   + I+  D  G T +H   
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIV-RLLIEHGAD-IRAQDSLGNTVLHILI 162

Query: 265 YHGMYWINRFYGNYGTVNLLLETD-----QSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
                            NLLL  D     +S   + +     T   LA  +GN  +   +
Sbjct: 163 LQPNKTFACQ-----MYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHL 216

Query: 320 ISK 322
           + K
Sbjct: 217 MQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 91.1 bits (227), Expect = 2e-21
 Identities = 50/236 (21%), Positives = 77/236 (32%), Gaps = 53/236 (22%)

Query: 155 TALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           + L  A    +V  +  L K    +   R      G+T L++AA   + +  + L+E + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQR---GAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 212 SVSHEGPN-----GKTALHAAAMKFDLVDTALRKLL-------------EKKENLIKETD 253
            +  E        G+TALH A +    V+    + L                        
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVIN-QNVNLV--RALLARGASVSARATGSVFHYRPHNLI 118

Query: 254 QYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGN 312
            YG  P+ +AA           G+   V LL+E    A     D     T LH+   Q N
Sbjct: 119 YYGEHPLSFAAC---------VGSEEIVRLLIE--HGADIRAQDSLGN-TVLHILILQPN 166

Query: 313 AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRN 368
                       + Y L+ +            +SL    +  G TP   LA V  N
Sbjct: 167 KTFAC-------QMYNLLLSYDGG-----DHLKSLELVPNNQGLTPFK-LAGVEGN 209

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 27/144 (18%), Positives = 42/144 (29%), Gaps = 43/144 (29%)

Query: 255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNA 313
              +P+  AA            +   ++ LL+  +    +      + TALH+AA   N 
Sbjct: 2   IWESPLLLAAK---------ENDVQALSKLLK-FEGCEVHQRGAMGE-TALHIAALYDNL 50

Query: 314 EIVDAIISKNPECYELV----DNRGWNFLHYAV------VTRSLINEG------------ 351
           E    ++   PE            G   LH AV      + R+L+  G            
Sbjct: 51  EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110

Query: 352 -------DAMGNTPLHVLAAVRRN 368
                     G  PL    A    
Sbjct: 111 HYRPHNLIYYGEHPLSF--AACVG 132

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  102 bits (258), Expect = 3e-26
 Identities = 35/177 (19%), Positives = 64/177 (36%), Gaps = 22/177 (12%)

Query: 150 NNEKNTALHEAVCHKNVDVVKIL---TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206
           + E    +       N   V++    T+ D +     ++ G +PL+ A     S +V  L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLN---QGDDHGFSPLHWACREGRSAVVEML 58

Query: 207 LENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYH 266
           +     ++       T LH AA      D   +KLL+ K + I   +++G  P+HYA   
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASH-GHRDIV-QKLLQYKAD-INAVNEHGNVPLHYAC-- 113

Query: 267 GMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK 322
                  F+G       L+     A  +I +K  +   +  A       + +     
Sbjct: 114 -------FWGQDQVAEDLVA--NGALVSICNKYGE-MPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  100 bits (251), Expect = 3e-25
 Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 42/213 (19%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
               +    + G++  V   ++                      +   ++   + LH A 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDN---------------TEND--LNQGDDHGFSPLHWAC 47

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
                 VV++L       +     N    TPL++AA     D+V  LL+    ++    +
Sbjct: 48  REGRSAVVEMLIMRGARIN---VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH 104

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
           G   LH A         A   L+      +   ++YG  P+  A                
Sbjct: 105 GNVPLHYACFW-GQDQVA-EDLVANGAL-VSICNKYGEMPVDKAKAP---------LREL 152

Query: 280 TVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
                           + +R          +G 
Sbjct: 153 LRERAE------KMGQNLNR--IPYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.3 bits (233), Expect = 9e-23
 Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 32/190 (16%)

Query: 183 ANNDGKTPLYMAAESRSSDMVLALLENS-TSVSHEGPNGKTALHAAAMK--FDLVDTALR 239
            + +    ++      ++  V   L+N+   ++    +G + LH A  +    +V+    
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEM--- 57

Query: 240 KLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKD 298
            L+ +    I   ++   TP+H AA H         G+   V  LL+    A  N  ++ 
Sbjct: 58  -LIMRGAR-INVMNRGDDTPLHLAASH---------GHRDIVQKLLQ--YKADINAVNEH 104

Query: 299 RKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLINE 350
                LH A   G  ++ + +++         + +  G   +  A       +       
Sbjct: 105 GN-VPLHYACFWGQDQVAEDLVANGALV---SICNKYGEMPVDKAKAPLRELLRERAEKM 160

Query: 351 GDAMGNTPLH 360
           G  +   P  
Sbjct: 161 GQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 33/162 (20%)

Query: 218 PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
           P     +     + +      R  L+  EN + + D +G++P+H+A            G 
Sbjct: 3   PEFMDDIFTQCREGNA-VAV-RLWLDNTENDLNQGDDHGFSPLHWACR---------EGR 51

Query: 278 YGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRG 334
              V +L+   + A  N+ ++    T LHLAA  G+ +IV  ++    +      V+  G
Sbjct: 52  SAVVEMLIM--RGARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKADINA---VNEHG 105

Query: 335 WNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAA 364
              LHYA       V   L+      +  +  G  P+   A 
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD-KAK 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  101 bits (254), Expect = 9e-26
 Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 45/203 (22%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
               +H  A  G    +   +E+                     I  T+ E  T L  A 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQ---------------ENV---INHTDEEGFTPLMWAA 44

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
            H  + VV+ L +   DP          ++ L +A     +D+V  LL+    V+    N
Sbjct: 45  AHGQIAVVEFLLQNGADPQ---LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN 101

Query: 220 GKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
           G T L  A        V    + LLE   +        G+  +  A            G 
Sbjct: 102 GGTPLLYAVHGNHVKCV----KMLLESGAD-PTIETDSGYNSMDLAVA---------LGY 147

Query: 278 YGTVNLLLETDQSASNIADKDRK 300
                ++       S++    + 
Sbjct: 148 RSVQQVIE------SHLLKLLQN 164

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 90.5 bits (226), Expect = 8e-22
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 31/177 (17%)

Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLE 243
                ++  A       +   +E    ++H    G T L  AA      +V      LL+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVV----EFLLQ 57

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMT 302
              +  +   +   + +  A            G    V +LL+       N  D +   T
Sbjct: 58  NGAD-PQLLGKGRESALSLACS---------KGYTDIVKMLLD--CGVDVNEYDWNGG-T 104

Query: 303 ALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLINEG 351
            L  A    + + V  ++    +P    +  + G+N +  AV      V + + +  
Sbjct: 105 PLLYAVHGNHVKCVKMLLESGADP---TIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.4 bits (218), Expect = 1e-20
 Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 26/138 (18%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           +N     G TPL  AA  G   +V FL++                GA     ++    + 
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQN---------------GAD---PQLLGKGRE 70

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
           +AL  A      D+VK+L     D +     + +G TPL  A        V  LLE+   
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVN---EYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127

Query: 213 VSHEGPNGKTALHAAAMK 230
            + E  +G  ++  A   
Sbjct: 128 PTIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 77.8 bits (193), Expect = 2e-17
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 44/153 (28%)

Query: 219 NGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
               ++H  A +     +       +E++   I  TD+ G+TP+ +AA          +G
Sbjct: 2   ANSLSVHQLAAQGEMLYL----ATRIEQENV-INHTDEEGFTPLMWAAA---------HG 47

Query: 277 NYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
               V  LL+    A   +  K R  +AL LA  +G  +IV  ++    +          
Sbjct: 48  QIAVVEFLLQ--NGADPQLLGKGR-ESALSLACSKGYTDIVKMLLDCGVD---------- 94

Query: 336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRN 368
                       +NE D  G TPL    AV  N
Sbjct: 95  ------------VNEYDWNGGTPLLY--AVHGN 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  102 bits (257), Expect = 2e-25
 Identities = 40/270 (14%), Positives = 76/270 (28%), Gaps = 56/270 (20%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G   L    +       +  +                 G     +K         L ++ 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAH---------------GMR---VKFNPLPL-ALLLDSS 45

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
                D+V+ +  E  DP      N++G T L+ A  +  +++V  L++   +V+    +
Sbjct: 46  LEGEFDLVQRIIYEVDDPS---LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD 102

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKE---NLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
           G T LH AA   ++      K L +       +  +D                      G
Sbjct: 103 GWTPLHCAASCNNV-QVC--KFLVESGAAVFAMTYSDMQTAADKCEEMEE---------G 150

Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWN 336
                  L    +    I +K     AL     Q + E+             + +     
Sbjct: 151 YTQCSQFLYGVQEKM-GIMNKGVI-YALWDYEPQNDDEL------------PMKEGDCMT 196

Query: 337 FLH---YAVVTRSLINEGDAMGNTPLHVLA 363
            +H      +        D  G  P ++L 
Sbjct: 197 IIHREDEDEIEWWWARLNDKEGYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 99.2 bits (248), Expect = 3e-24
 Identities = 30/218 (13%), Positives = 52/218 (23%), Gaps = 39/218 (17%)

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
             +L                      +   N      L  ++     D+V  ++      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR 273
           S     G TALH A       +   + L++   N +   D  GWTP+H AA         
Sbjct: 64  SLPNDEGITALHNAVCAGHT-EIV-KFLVQFGVN-VNAADSDGWTPLHCAAS-------- 112

Query: 274 FYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD 331
              N      L+E      A   +D             +G  +    +     +      
Sbjct: 113 -CNNVQVCKFLVESGAAVFAMTYSDMQTA-ADKCEEMEEGYTQCSQFLYGVQEK------ 164

Query: 332 NRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369
                           +   +      L        +E
Sbjct: 165 ----------------MGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 35/221 (15%)

Query: 98  VNAK--GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNT 155
           V         L  ++  G   +V  ++                         + N+E  T
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYE---------------VDD---PSLPNDEGIT 72

Query: 156 ALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
           ALH AVC  + ++VK L +   + +   +A++DG TPL+ AA   +  +   L+E+  +V
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

Query: 214 ---SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW 270
              ++              +      + + L   +E  +   ++     +          
Sbjct: 130 FAMTYSDMQTAADKCEEMEE-GYTQCS-QFLYGVQEK-MGIMNKGVIYALWDYEPQNDDE 186

Query: 271 INRFYGNYGTVNL---LLETDQSASNIADKDRKMTALHLAA 308
           +    G+  T+       E +   + + DK+      +L  
Sbjct: 187 LPMKEGDCMTIIHREDEDEIEWWWARLNDKE-GYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 33/184 (17%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
            +     G T LH A   GH+ IV FLV+                G     +   +++  
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQF---------------GVN---VNAADSDGW 104

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK--TPLYMAAESRSSDMVLALLENSTS 212
           T LH A    NV V K L +          +D +         E   +     L      
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 164

Query: 213 VSHEGPNGKTALHAAAMKFD----LVDTALRKLLEKKENLIKE------TDQYGWTPIHY 262
           +         AL     + D    + +     ++ +++    E       D+ G+ P + 
Sbjct: 165 MGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNL 224

Query: 263 AAYH 266
              +
Sbjct: 225 LGLY 228

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.3 bits (178), Expect = 9e-15
 Identities = 28/164 (17%), Positives = 48/164 (29%), Gaps = 43/164 (26%)

Query: 219 NGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY 278
            G+ +L       +L  T   + +      +K         +  ++           G +
Sbjct: 4   TGQVSLPPGKRT-NLRKTG-SERIAHGMR-VKFNP-LPLALLLDSS---------LEGEF 50

Query: 279 GTVNLLLETDQSASNIADKDRK----MTALHLAAGQGNAEIVDAIISK--NPECYELVDN 332
             V  ++        + D        +TALH A   G+ EIV  ++    N       D+
Sbjct: 51  DLVQRII------YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA---ADS 101

Query: 333 RGWNFLHYAV------VTRSLINEG---------DAMGNTPLHV 361
            GW  LH A       V + L+  G         D         
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 31/130 (23%)

Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
           +  G   +                   T +  +        +      +  L  ++ +G 
Sbjct: 2   EITGQVSLPPGKR---------TNLRKTGSERIA--HGM-RVKFNPLPLALLLDSSLEGE 49

Query: 313 AEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTP 358
            ++V  II +  +P    L ++ G   LH AV      + + L+      N  D+ G TP
Sbjct: 50  FDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106

Query: 359 LHVLAAVRRN 368
           LH   A   N
Sbjct: 107 LH--CAASCN 114

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (252), Expect = 2e-25
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 17/175 (9%)

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
            ++    L EA      D V+IL     D   + +  G TPL++AA +   ++V  LL+N
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 210 STSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMY 269
              V+     G T L  AA+   L +    ++L K    +   D  G TP+H AA     
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHL-EIV--EVLLKNGADVNANDMEGHTPLHLAAM---- 122

Query: 270 WINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
                +G+   V +LL+    A  N  DK  K TA  ++   GN ++ + +   N
Sbjct: 123 -----FGHLEIVEVLLK--NGADVNAQDKFGK-TAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 31/190 (16%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
            +     L  AA+ G    V  L+                 GA    +   +    T LH
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA---------------NGA---DVNAEDASGWTPLH 52

Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
            A  + ++++V++L K   D   + ++ G TPL +AA     ++V  LL+N   V+    
Sbjct: 53  LAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111

Query: 219 NGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY 278
            G T LH AAM   L +     LL+   + +   D++G T    +            GN 
Sbjct: 112 EGHTPLHLAAMFGHL-EIV-EVLLKNGAD-VNAQDKFGKTAFDISID---------NGNE 159

Query: 279 GTVNLLLETD 288
               +L + +
Sbjct: 160 DLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.0 bits (217), Expect = 1e-20
 Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 40/188 (21%)

Query: 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKL 241
              +D    L  AA +   D V  L+ N   V+ E  +G T LH AA    L +     L
Sbjct: 9   HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHL-EIV-EVL 66

Query: 242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRK 300
           L+   + +   D  G TP+  AA          +G+   V +LL+    A  N  D +  
Sbjct: 67  LKNGAD-VNAVDHAGMTPLRLAAL---------FGHLEIVEVLLK--NGADVNANDMEGH 114

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLH 360
            T LHLAA  G+ EIV+ ++             G +           +N  D  G T   
Sbjct: 115 -TPLHLAAMFGHLEIVEVLLKN-----------GAD-----------VNAQDKFGKTAFD 151

Query: 361 VLAAVRRN 368
           +  ++   
Sbjct: 152 I--SIDNG 157

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 21/78 (26%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNA    G TPLH+AA FGH  IV  L++                GA    +   +    
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKN---------------GAD---VNAQDKFGK 147

Query: 155 TALHEAVCHKNVDVVKIL 172
           TA   ++ + N D+ +IL
Sbjct: 148 TAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.8 bits (110), Expect = 4e-06
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 14/84 (16%)

Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRS 346
           +          L  AA  G  + V  +++   +     D  GW  LH A       +   
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 347 LI------NEGDAMGNTPLHVLAA 364
           L+      N  D  G TPL  LAA
Sbjct: 66  LLKNGADVNAVDHAGMTPLR-LAA 88

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (255), Expect = 4e-25
 Identities = 48/243 (19%), Positives = 85/243 (34%), Gaps = 56/243 (23%)

Query: 99  NAKGDTPLHVAA---KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNT 155
            + G T L  A    + G +  +  L++  K    ++   +  V A          + ++
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDK----DSGNPKPLVNAQ---CTDEFYQGHS 92

Query: 156 ALHEAVCHKNVDVVKIL------------TKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
           ALH A+  +++  VK+L             +    ++ +    G+ PL +AA ++  D+V
Sbjct: 93  ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 204 LALLENST---SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260
             LLEN     S+      G T LHA                      +   +    + +
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALV--------------------MIADNSPENSAL 192

Query: 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
               Y          G       L  T Q    I++    +T L LAA +G  EI   I+
Sbjct: 193 VIHMY---------DGLLQMGARLCPTVQLE-EISNHQ-GLTPLKLAAKEGKIEIFRHIL 241

Query: 321 SKN 323
            + 
Sbjct: 242 QRE 244

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 47/287 (16%), Positives = 73/287 (25%), Gaps = 87/287 (30%)

Query: 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH 163
             L      G    +T L+E   L  +     +S             +   T L +AV +
Sbjct: 4   DRLFSVVSRGVPEELTGLLE--YLRWNSKYLTDS--------AYTEGSTGKTCLMKAVLN 53

Query: 164 KN---VDVVKILTKEDPDYRY----------SANNDGKTPLYMAAESRSSDMVLALLENS 210
                   +  L + D D                  G + L++A E RS   V  L+EN 
Sbjct: 54  LQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG 113

Query: 211 TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW 270
             V           H                             +G  P+  AA      
Sbjct: 114 ADVHLRACGRFFQKHQGTC-----------------------FYFGELPLSLAAC----- 145

Query: 271 INRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIVDAIISKNPECYEL 329
                  +  V  LLE     +++   D    T LH      +                 
Sbjct: 146 ----TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD----------------- 184

Query: 330 VDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLAA 364
            ++   + L   +      +   L          +  G TPL  LAA
Sbjct: 185 -NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 35/213 (16%), Positives = 56/213 (26%), Gaps = 58/213 (27%)

Query: 187 GKTPLYMAAESRSSDMVLALLE--------NSTSVSHEGPNGKTALHAAAMKFDLVDTAL 238
            +  L+        + +  LLE         + S   EG  GKT L  A +       A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 239 RKLL----EKKENL-------IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE- 286
              L    +   N          +    G + +H A             +   V LL+E 
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR---------SLQCVKLLVEN 112

Query: 287 ----------TDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWN 336
                                      L LAA     ++V  ++    +           
Sbjct: 113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-------- 164

Query: 337 FLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369
                      +   D++GNT LH L  +  N 
Sbjct: 165 -----------LEATDSLGNTVLHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.0 bits (148), Expect = 9e-11
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 47/166 (28%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G+ PL +AA      +VT+L+E    P                    T++  NT LH  V
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEA---------------TDSLGNTVLHALV 180

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
              +                  N+   + L +        M   L             G 
Sbjct: 181 MIAD------------------NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222

Query: 222 TALHAAAM--KFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY 265
           T L  AA   K ++     R +L+++ +        G    H+  +
Sbjct: 223 TPLKLAAKEGKIEIF----RHILQREFS--------GAAAHHHHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 25/184 (13%), Positives = 57/184 (30%), Gaps = 30/184 (16%)

Query: 220 GKTALHAAAMK--FDLVDTALRKLLEKKENL---IKETDQYGWTPIHYAAYHGMYWINRF 274
            +  L +   +   + +   L  L    + L          G T +  A       +N  
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV------LNLQ 55

Query: 275 YGNYGTVNLLLETDQSA--------SNIADKDRK-MTALHLAAGQGNAEIVDAIISKNPE 325
            G    +  LL+ D+ +        +   D+  +  +ALH+A  + + + V  ++    +
Sbjct: 56  DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115

Query: 326 CYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV 385
              L     +   H               G  PL + A  ++ +    ++ N       +
Sbjct: 116 -VHLRACGRFFQKHQGT--------CFYFGELPLSLAACTKQWDVVTYLLENPHQPAS-L 165

Query: 386 NKQN 389
              +
Sbjct: 166 EATD 169

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 64  NTILHINIISKERENVSTEFV----EEILEKCPSLLLQ------VNAKGDTPLHVAAKFG 113
           NT+LH  ++  +    ++  V    + +L+    L          N +G TPL +AAK G
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232

Query: 114 HSGIVTFLVER 124
              I   +++R
Sbjct: 233 KIEIFRHILQR 243

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  100 bits (251), Expect = 4e-25
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 41/225 (18%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           ++  G+    +  +   +  + FL    +                       ++   T L
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-YR-----------------------DSYNRTPL 39

Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217
             A      + +  L +         + +G T L  A ++    +   LL   ++V+ + 
Sbjct: 40  MVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98

Query: 218 PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
            +GKT L  + +     + +   LLE   N + + +  G TP+  A+          YG 
Sbjct: 99  FSGKTPLMWSIIFGYS-EMS-YFLLEHGAN-VNDRNLEGETPLIVASK---------YGR 146

Query: 278 YGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIIS 321
              V  LLE    A  +  D     TA   A   G  E++     
Sbjct: 147 SEIVKKLLE--LGADISARDLTGL-TAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 92.5 bits (231), Expect = 3e-22
 Identities = 38/199 (19%), Positives = 64/199 (32%), Gaps = 34/199 (17%)

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
           +                  +  L           ++  +TPL +A      + +  L+EN
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 210 STSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMY 269
              +  +   G TAL  A     L   A  KLL K  N +   D  G TP+ ++      
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRL-GIA-EKLLSKGSN-VNTKDFSGKTPLMWSII---- 110

Query: 270 WINRFYGNYGTVNLLLETDQSASNIADKDRK----MTALHLAAGQGNAEIVDAIISK--N 323
                +G       LL       + A+ + +     T L +A+  G +EIV  ++    +
Sbjct: 111 -----FGYSEMSYFLL------EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD 159

Query: 324 PECYELVDNRGWNFLHYAV 342
                  D  G      A 
Sbjct: 160 ISA---RDLTGLTAEASAR 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.7 bits (229), Expect = 6e-22
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 34/194 (17%)

Query: 96  LQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNE 152
              N +     TPL VA   G    +  LVE                      ++  + E
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVEN---------------FDK---LEDKDIE 67

Query: 153 KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
            +TAL  AV +  + + + L  +  +   + +  GKTPL  +     S+M   LLE+  +
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126

Query: 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
           V+     G+T L  A+      +   +KLLE   + I   D  G T    A         
Sbjct: 127 VNDRNLEGETPLIVASKY-GRSEIV-KKLLELGAD-ISARDLTGLTAEASARI------- 176

Query: 273 RFYGNYGTVNLLLE 286
             +G    + +  E
Sbjct: 177 --FGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 88.6 bits (221), Expect = 7e-21
 Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 51/207 (24%)

Query: 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALR 239
             + +G+    +  E   +  +  L     S        +T L  A M    + +     
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAI----D 52

Query: 240 KLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDR 299
           KL+E  +  +++ D  G T + +A               G    LL      S  ++ + 
Sbjct: 53  KLVENFDK-LEDKDIEGSTALIWAVK---------NNRLGIAEKLL------SKGSNVNT 96

Query: 300 K----MTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAVVTRSL------ 347
           K     T L  +   G +E+   ++    N       +  G   L  A            
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND---RNLEGETPLIVASKYGRSEIVKKL 153

Query: 348 ------INEGDAMGNTPLHVLAAVRRN 368
                 I+  D  G T      A    
Sbjct: 154 LELGADISARDLTGLTAEAS--ARIFG 178

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  101 bits (253), Expect = 1e-24
 Identities = 54/284 (19%), Positives = 92/284 (32%), Gaps = 63/284 (22%)

Query: 65  TILHINIISKERENVSTEFVEEILEKCPSLLLQVNAK----GDTPLHVA---AKFGHSGI 117
             +       +      E +   L++    L     K    G T L  A      G +  
Sbjct: 15  RSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 118 VTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKIL----- 172
           +  L++ A+    + + L+  V A       +  +  TALH A+  +N+ +V +L     
Sbjct: 73  IALLLDVAR----KTDSLKQFVNA---SYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 173 --------TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS---VSHEGPNGK 221
                                 G+ PL +AA +    +V  LL+NS     +S     G 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 222 TALHAAAMKFD-------LVDTALRKLLEKKENLIKE------TDQYGWTPIHYAAYHGM 268
           T LHA     D        V +   ++L     L         T++ G TP+  AA    
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS--- 242

Query: 269 YWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
                  G  G +  +L+ +        +       H AA   +
Sbjct: 243 ------SGKIGVLAYILQRE------IHEP---ECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 96.0 bits (239), Expect = 8e-23
 Identities = 44/281 (15%), Positives = 81/281 (28%), Gaps = 60/281 (21%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
                  +  A    +   +  L+   +  +    + E                  T L 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK----------DPETGKTCLL 59

Query: 159 EAVCH---KNVDVVKIL-----TKEDPDYRYSAN-----NDGKTPLYMAAESRSSDMVLA 205
           +A+ +      D + +L       +      +A+       G+T L++A E R+  +V  
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 206 LLEN--------------STSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENL- 248
           L+EN               T        G+  L  AA      +V    + LL+      
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV----KFLLQNSWQPA 175

Query: 249 -IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ------SASNIADKDRKM 301
            I   D  G T +H         ++         N +L              I ++   +
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG-L 234

Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV 342
           T L LAA  G   ++  I+ +        +       H A 
Sbjct: 235 TPLALAASSGKIGVLAYILQR--------EIHEPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.1 bits (221), Expect = 2e-20
 Identities = 46/286 (16%), Positives = 83/286 (29%), Gaps = 74/286 (25%)

Query: 141 AARQMIKMTNNEKNTALHEAVCHKN-------VDVVKILTKEDPDYRYSANNDGKTPLYM 193
           +     K        ++ +AV   N       +  ++   K   D  +     GKT L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 194 AAESRSS---DMVLALLENS-----------TSVSHEGPNGKTALHAAAMK--FDLVDTA 237
           A  +  +   D +  LL+ +            S +     G+TALH A  +    LV   
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLV--- 117

Query: 238 LRKLLEK-------------KENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLL 284
              L+E              K+   +    +G  P+  AA                V  L
Sbjct: 118 -TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT---------NQLAIVKFL 167

Query: 285 LETDQSASNIADKDRK-MTALHLAAGQGNAEI---------------VDAIISKNPECYE 328
           L+     ++I+ +D    T LH      +  +               + A +    +  E
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 329 LVDNRGWNFLHYAV------VTRSLINEGDAMGNTPLHVLAAVRRN 368
           + + +G   L  A       V   ++           H   A   +
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYILQRE-IHEPECRHA--AAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.8 bits (184), Expect = 2e-15
 Identities = 39/231 (16%), Positives = 63/231 (27%), Gaps = 61/231 (26%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLEN-STSVSH-------EGPNGKTALHAAAM--KFDL 233
               +  ++ A    +   + +LL     S          +   GKT L  A +      
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 234 VDTALRKLLEKKENL----------IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNL 283
            DT    LL+                 ++   G T +H A             N   V L
Sbjct: 70  NDTI-ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE---------RRNMTLVTL 119

Query: 284 LLE------------TDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD 331
           L+E              +              L LAA      IV  ++  + +  +   
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD--- 176

Query: 332 NRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNY 382
                           I+  D++GNT LH L  V  N   +     +  N 
Sbjct: 177 ----------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 27/186 (14%), Positives = 50/186 (26%), Gaps = 55/186 (29%)

Query: 249 IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLET-DQSASNIADKDRK-----MT 302
            K    Y    I  A             N   +  LL    +S   + D + K      T
Sbjct: 6   EKPPRLYDRRSIFDAVAQ---------SNCQELESLLPFLQRSKKRLTDSEFKDPETGKT 56

Query: 303 ALHLA---AGQGNAEIVDAIISKNPEC----------YELVDNRGWNFLHYAV------V 343
            L  A      G  + +  ++    +           Y     +G   LH A+      +
Sbjct: 57  CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL 116

Query: 344 TRSLINEG--------------------DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD 383
              L+  G                       G  PL + A   +      +++N+    D
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD 176

Query: 384 AVNKQN 389
            ++ ++
Sbjct: 177 -ISARD 181

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 35/114 (30%)

Query: 64  NTILHINIISKERENVSTEFVEEI----------LEKCPSLLLQVNAKGDTPLHVAAKFG 113
           NT+LH  +   +    +T+FV  +          L     L    N KG TPL +AA  G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 114 HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVD 167
             G++ ++++R                            +    H A  H +  
Sbjct: 245 KIGVLAYILQR-------------------------EIHEPECRHAAAHHHHHH 273

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  100 bits (250), Expect = 1e-24
 Identities = 38/230 (16%), Positives = 68/230 (29%), Gaps = 45/230 (19%)

Query: 97  QVNAK------GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN 150
                          L  AA  G   +V   V+                          N
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---------------MN---DPSQPN 51

Query: 151 NEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLE 208
            E  TALH A+C  N  +V  L     + +   S ++ G TPL+ AA    + + +AL++
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALVQ 108

Query: 209 NSTSVSHEGPN-GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267
           +  ++     + G TA        +        L + +++ +   +      +   +   
Sbjct: 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAE- 166

Query: 268 MYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIV 316
                          L     +S   +  +D    T    AA  G    V
Sbjct: 167 -----------FGDELSFREGESV-TVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.9 bits (216), Expect = 6e-20
 Identities = 37/203 (18%), Positives = 65/203 (32%), Gaps = 25/203 (12%)

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
             L +A     ++VV+   KE  DP      N +G T L+ A    +  +V  L+    +
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMNDPS---QPNEEGITALHNAICGANYSIVDFLITAGAN 79

Query: 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
           V+    +G T LH AA   D        L++    +   T   G T       +      
Sbjct: 80  VNSPDSHGWTPLHCAASCNDT-VIC-MALVQHGAAIFATTLSDGATAFEKCDPY------ 131

Query: 273 RFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
              G       L + +QS   + +    + AL   +     + +     ++       D 
Sbjct: 132 -REGYADCATYLADVEQSM-GLMNSGA-VYALWDYS-AEFGDELSFREGESVTVLR-RDG 186

Query: 333 RGWNFLHYA-------VVTRSLI 348
                  +A        V R+  
Sbjct: 187 PEETDWWWAALHGQEGYVPRNYF 209

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  100 bits (251), Expect = 1e-24
 Identities = 37/233 (15%), Positives = 66/233 (28%), Gaps = 51/233 (21%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           V ++ +TP   AA+      ++ L+E                      +   +    TAL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 81

Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217
                  +   V++L +   D  +     G T L+MAA     ++V AL+E    +  E 
Sbjct: 82  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141

Query: 218 PNGKTALHAAAMKF-------------DLVDTALRKLLEKKENLIKET------DQYGWT 258
             G TAL  A                  +    +  +LE +     E          G  
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKD 201

Query: 259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
             +   +                 +        +    KD +   L  A  + 
Sbjct: 202 VEYLVRW---------KDGGDCEWVKGV---HVAEDVAKDYE-DGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =   99 bits (250), Expect = 2e-24
 Identities = 42/282 (14%), Positives = 73/282 (25%), Gaps = 66/282 (23%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
           +   +G     +  K GHS                         A         +E  T 
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSYI---------------AAD------VVSEYETP 48

Query: 157 LHEAVCHKNVDVVKILTKE-DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
              A    +   +  L ++ D D   + + +G+T L   A   S   V  L E    + H
Sbjct: 49  WWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105

Query: 216 -EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
            +   G TALH AA      +     L+E   + I+  D+ G T +  A           
Sbjct: 106 RDMRGGLTALHMAAGYVRP-EVV-EALVELGAD-IEVEDERGLTALELARE--------- 153

Query: 275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRG 334
                     ++       I  +   +  +        AE+ + +             +G
Sbjct: 154 ILKTTPKGNPMQ---FGRRIGLEK--VINVLEGQVFEYAEVDEIVEK---------RGKG 199

Query: 335 WNFLHYAVVTRSL------------INEGDAMGNTPLHVLAA 364
            +  +                        D      L    A
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 98.1 bits (245), Expect = 8e-24
 Identities = 44/239 (18%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSD 201
            + +   T  E            +       +    D      ++ +TP + AA      
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQ 59

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
            +  LLE+   V     NG+TAL   A          R L E   +L     + G T +H
Sbjct: 60  ALSQLLEDR-DVDAVDENGRTALLFVAGLGSD-KCV-RLLAEAGADLDHRDMRGGLTALH 116

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAII 320
            AA          Y     V  L+E    A   + D+    TAL LA            +
Sbjct: 117 MAAG---------YVRPEVVEALVE--LGADIEVEDERGL-TALELAREILKTTPKGNPM 164

Query: 321 SK--NPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377
                    ++++        YA V    I E    G    +++      +   V   +
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDE--IVEKRGKGKDVEYLVRWKDGGDCEWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 32/136 (23%)

Query: 243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMT 302
           E  + +   T   G                   G+  +          A+++  +    T
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWK---------DGHSPSWVPSSYI---AADVVSEYE--T 47

Query: 303 ALHLAAGQGNAEIVDAIISK-NPECYELVDNRGWNFLHYAV------VTRSLINEG---- 351
               AA + + + +  ++   + +    VD  G   L +          R L   G    
Sbjct: 48  PWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104

Query: 352 ---DAMGNTPLHVLAA 364
                 G T LH +AA
Sbjct: 105 HRDMRGGLTALH-MAA 119

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 99.6 bits (248), Expect = 2e-24
 Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 42/256 (16%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
                ++A       +   ++                  +       T+ +  TALH A 
Sbjct: 7   NIMICNLAYSGKLDELKERILAD---------------KSL---ATRTDQDSRTALHWAC 48

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
              + ++V+ L +     +     ++ G +PL++AA +   ++V ALL     V+    N
Sbjct: 49  SAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
           G T LH AA K       +  +L +        D Y  T +H AA           GN  
Sbjct: 106 GCTPLHYAASKNRH---EIAVMLLEGGANPDAKDHYDATAMHRAAAK---------GNLK 153

Query: 280 TVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLH 339
            V++LL    S  NI D +   T LHLA  +   E    ++++    Y   +      L 
Sbjct: 154 MVHILLFYKAST-NIQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYI-ENKEEKTPLQ 210

Query: 340 YAV----VTRSLINEG 351
            A     +    + EG
Sbjct: 211 VAKGGLGLILKRLAEG 226

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.3 bits (224), Expect = 4e-21
 Identities = 50/228 (21%), Positives = 85/228 (37%), Gaps = 38/228 (16%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
                    T LH A   GH+ IV FL++                G     +   ++   
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQL---------------GVP---VNDKDDAGW 74

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
           + LH A      ++VK L  +      + N +G TPL+ AA     ++ + LLE   +  
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133

Query: 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
            +     TA+H AA K +L    +  +L   +      D  G TP+H A         +F
Sbjct: 134 AKDHYDATAMHRAAAKGNL---KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK 322
               G          ++  I +K+ K T L +A   G   ++   +++
Sbjct: 191 LVTQG----------ASIYIENKEEK-TPLQVAK--GGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 32/223 (14%)

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
              + A   K  ++ + +  +          + D +T L+ A  +  +++V  LL+    
Sbjct: 9   MICNLAYSGKLDELKERILADKSLAT---RTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWIN 272
           V+ +   G + LH AA      +    K L  K   +   +Q G TP+HYAA    + I 
Sbjct: 66  VNDKDDAGWSPLHIAASA-GXDEIV--KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIA 122

Query: 273 RFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
                 G          +  +  D     TA+H AA +GN ++V  ++          D 
Sbjct: 123 VMLLEGG----------ANPDAKDHYDA-TAMHRAAAKGNLKMVHILLFYKASTNI-QDT 170

Query: 333 RGWNFLHYAVVTRSL------------INEGDAMGNTPLHVLA 363
            G   LH A     +            I   +    TPL V  
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 97.1 bits (243), Expect = 3e-24
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 35/191 (18%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
            N++ D  L  AAK G    V  L                   +     +     ++T L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV---------------QSVN--CRDIEGRQSTPL 46

Query: 158 HEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           H A  +  V VV+ L +   D     + +  G  PL+ A      ++   L+++   V+ 
Sbjct: 47  HFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103

Query: 216 EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY 275
                 T LH AA K    +   + LL+   +   + ++ G TP+               
Sbjct: 104 ADLWKFTPLHEAAAKGKY-EIC-KLLLQHGAD-PTKKNRDGNTPLDLVK----------D 150

Query: 276 GNYGTVNLLLE 286
           G+    +LL  
Sbjct: 151 GDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 86.3 bits (215), Expect = 2e-20
 Identities = 41/183 (22%), Positives = 67/183 (36%), Gaps = 39/183 (21%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN-------GKTALHAAAMKFDLVDT 236
           N++    L  AA++   + V  L       + +  N         T LH AA  ++ V  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLC------TVQSVNCRDIEGRQSTPLHFAA-GYNRVSV 57

Query: 237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIA 295
               LL+   + +   D+ G  P+H A           YG+Y    LL++    A  N+A
Sbjct: 58  V-EYLLQHGAD-VHAKDKGGLVPLHNACS---------YGHYEVAELLVK--HGAVVNVA 104

Query: 296 DKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV-----VTRSLI 348
           D  +  T LH AA +G  EI   ++    +P      +  G   L         +   L 
Sbjct: 105 DLWKF-TPLHEAAAKGKYEICKLLLQHGADP---TKKNRDGNTPLDLVKDGDTDIQDLLR 160

Query: 349 NEG 351
            + 
Sbjct: 161 GDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 31/131 (23%)

Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD-RKMTALHLAAGQG 311
           +      +  AA           G+  TV  L      + N  D + R+ T LH AAG  
Sbjct: 5   NSEADRQLLEAAK---------AGDVETVKKLCT--VQSVNCRDIEGRQSTPLHFAAGYN 53

Query: 312 NAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNT 357
              +V+ ++    +       D  G   LH A       V   L+      N  D    T
Sbjct: 54  RVSVVEYLLQHGADVHA---KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110

Query: 358 PLHVLAAVRRN 368
           PLH   A  + 
Sbjct: 111 PLHE--AAAKG 119

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.7 bits (242), Expect = 3e-24
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 40/190 (21%)

Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
           +    L  AA  G    V  L+ R                         N    TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHR--------------ELVH---PDALNRFGKTALQVM 43

Query: 161 VCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
               +  +   L K+   P+     +  G +P++ AA +   D +  L+E+   V+    
Sbjct: 44  -MFGSTAIALELLKQGASPN---VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

Query: 219 NGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
            G   +H A  +    +V       L  + + +   D  G TP+  A            G
Sbjct: 100 TGALPIHLAVQEGHTAVV-----SFLAAESD-LHRRDARGLTPLELALQ---------RG 144

Query: 277 NYGTVNLLLE 286
               V++L  
Sbjct: 145 AQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.7 bits (242), Expect = 4e-24
 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 22/171 (12%)

Query: 154 NTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210
              L  A    +V  V+ L       PD   + N  GKT L +     S+ + L LL+  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVMMFG-STAIALELLKQG 58

Query: 211 TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW 270
            S + +  +G + +H AA    L DT  + L+E   + +   D  G  PIH A       
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFL-DTL-KVLVEHGAD-VNVPDGTGALPIHLAVQ----- 110

Query: 271 INRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
                G+   V+ L    +S  +  D     T L LA  +G  ++VD +  
Sbjct: 111 ----EGHTAVVSFLAA--ESDLHRRDARGL-TPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 33/159 (20%)

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
               L  AA + D+ +    +LL ++       +++G T +    +          G+  
Sbjct: 2   AGDRLSGAAARGDVQEVR--RLLHRELVHPDALNRFGKTALQVMMF----------GSTA 49

Query: 280 TVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWN 336
               LL+  Q AS N+ D     + +H AA  G  + +  ++    +       D  G  
Sbjct: 50  IALELLK--QGASPNVQDTSGT-SPVHDAARTGFLDTLKVLVEHGADVNV---PDGTGAL 103

Query: 337 FLHYAV------VTRSLI-----NEGDAMGNTPLHVLAA 364
            +H AV      V   L      +  DA G TPL  LA 
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLE-LAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.8 bits (193), Expect = 2e-17
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 31/152 (20%)

Query: 84  VEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVG 140
           V  +L +        +A    G T L V   FG + I   L+++               G
Sbjct: 18  VRRLLHRELV---HPDALNRFGKTALQVMM-FGSTAIALELLKQ---------------G 58

Query: 141 AARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESR 198
           A+     + +    + +H+A     +D +K+L +   D +     +  G  P+++A +  
Sbjct: 59  AS---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEG 112

Query: 199 SSDMVLALLENSTSVSHEGPNGKTALHAAAMK 230
            + +V  L   S  +      G T L  A  +
Sbjct: 113 HTAVVSFLAAES-DLHRRDARGLTPLELALQR 143

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 29/123 (23%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
            LL+     N +   G +P+H AA+ G    +  LVE                GA    +
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH---------------GA---DV 94

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKE-DPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
            + +      +H AV   +  VV  L  E D       +  G TPL +A +  + D+V  
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDI 151

Query: 206 LLE 208
           L  
Sbjct: 152 LQG 154

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 96.7 bits (242), Expect = 3e-24
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 22/178 (12%)

Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
           M        L  A    +++ +  L +   + +   + N  G+T L +     + ++   
Sbjct: 1   MAEPW-GNELASAAARGDLEQLTSLLQNNVNVN---AQNGFGRTALQVMKLG-NPEIARR 55

Query: 206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY 265
           LL    +   +   G   +H AA    L DT  + LLE + + +   D  G  P+H AA 
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFL-DTL-QTLLEFQAD-VNIEDNEGNLPLHLAAK 112

Query: 266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIVDAIISK 322
                     G+   V  L++   +ASN+  ++ K  TA  LA   G  E+V  + + 
Sbjct: 113 ---------EGHLRVVEFLVK--HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 93.2 bits (233), Expect = 7e-23
 Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 35/188 (18%)

Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
                L  AA  G    +T L++                      +   N    TAL   
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQN---------------NVN---VNAQNGFGRTALQVM 45

Query: 161 VCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
               N ++ + L     +PD     +  G   ++ AA +   D +  LLE    V+ E  
Sbjct: 46  -KLGNPEIARRLLLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

Query: 219 NGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY 278
            G   LH AA +   +      L++   + +   +  G T    A           YG  
Sbjct: 102 EGNLPLHLAAKE-GHLRVV-EFLVKHTASNVGHRNHKGDTACDLARL---------YGRN 150

Query: 279 GTVNLLLE 286
             V+L+  
Sbjct: 151 EVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 40/186 (21%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
                  L  AA     + + +LL+N+ +V+ +   G+TAL    +     + A R+LL 
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN--PEIA-RRLLL 58

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMT 302
           +  N     D+ G+  IH AA           G   T+  LLE    A  NI D +    
Sbjct: 59  RGAN-PDLKDRTGFAVIHDAAR---------AGFLDTLQTLLE--FQADVNIEDNEGN-L 105

Query: 303 ALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVL 362
            LHLAA +G+  +V+ ++                           +   +  G+T   + 
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASN---------------------VGHRNHKGDTACDL- 143

Query: 363 AAVRRN 368
            A    
Sbjct: 144 -ARLYG 148

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.6 bits (177), Expect = 4e-15
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 28/139 (20%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNA+   G T L V    G+  I   L+ R               GA      + +    
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLLLR---------------GAN---PDLKDRTGF 71

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN-ST 211
             +H+A     +D ++ L +   D +     +N+G  PL++AA+     +V  L+++ ++
Sbjct: 72  AVIHDAARAGFLDTLQTLLEFQADVN---IEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128

Query: 212 SVSHEGPNGKTALHAAAMK 230
           +V H    G TA   A + 
Sbjct: 129 NVGHRNHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 5e-13
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 21/115 (18%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
            + K   G   +H AA+ G    +  L+E                 A    + + +NE N
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEF---------------QAD---VNIEDNEGN 104

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
             LH A    ++ VV+ L K         N+ G T   +A     +++V  +  N
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 18/164 (10%)

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
              L EA      D V+IL      +  + +  G +PL++AA+         LL    S 
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR 273
                  +T LH AA +    +    ++L K    +   D    T +H+A          
Sbjct: 61  DARTKVDRTPLHMAASEGHA-NIV--EVLLKHGADVNAKDMLKMTALHWATE-------- 109

Query: 274 FYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIV 316
            + +   V LL++    A  +   K  K TA  ++   GN ++ 
Sbjct: 110 -HNHQEVVELLIK--YGADVHTQSKFCK-TAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 23/166 (13%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
               L  AA+ G    V  L+                 GA       T+    + LH A 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMAN---------------GAP---FT-TDWLGTSPLHLAA 42

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
            + +    ++L +     R +     +TPL+MAA    +++V  LL++   V+ +     
Sbjct: 43  QYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM 101

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267
           TALH A       +    +LL K    +    ++  T    +  +G
Sbjct: 102 TALHWATEHNHQ-EVV--ELLIKYGADVHTQSKFCKTAFDISIDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 81.7 bits (203), Expect = 7e-19
 Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 41/184 (22%)

Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK 245
           D    L  AA +   D V  L+ N    + +   G + LH AA       T    LL   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDW-LGTSPLHLAAQY-GHFSTT-EVLLRAG 57

Query: 246 ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTAL 304
            +      +   TP+H AA           G+   V +LL+    A  N  D   KMTAL
Sbjct: 58  VS-RDARTKVDRTPLHMAAS---------EGHANIVEVLLK--HGADVNAKDML-KMTAL 104

Query: 305 HLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
           H A    + E+V+ +I    +                      ++       T   +  +
Sbjct: 105 HWATEHNHQEVVELLIKYGAD----------------------VHTQSKFCKTAFDI--S 140

Query: 365 VRRN 368
           +   
Sbjct: 141 IDNG 144

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.3 bits (184), Expect = 3e-16
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 25/137 (18%)

Query: 98  VNAK--GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNT 155
                 G +PLH+AA++GH      L+                 G +            T
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRA---------------GVS---RDARTKVDRT 69

Query: 156 ALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
            LH A    + ++V++L K   D +   + +    T L+ A E    ++V  L++    V
Sbjct: 70  PLHMAASEGHANIVEVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYGADV 126

Query: 214 SHEGPNGKTALHAAAMK 230
             +    KTA   +   
Sbjct: 127 HTQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.1 bits (160), Expect = 6e-13
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 26/111 (23%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
            +A+     TPLH+AA  GH+ IV  L++                GA    +   +  K 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH---------------GAD---VNAKDMLKM 101

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMV 203
           TALH A  H + +VV++L K   D     + +   KT   ++ ++ + D+ 
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVH---TQSKFCKTAFDISIDNGNEDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK     T LH A +  H  +V  L++                GA    +   +    
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKY---------------GAD---VHTQSKFCK 134

Query: 155 TALHEAVCHKNVDVVKIL 172
           TA   ++ + N D+ +IL
Sbjct: 135 TAFDISIDNGNEDLAEIL 152

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.6 bits (231), Expect = 2e-22
 Identities = 37/175 (21%), Positives = 53/175 (30%), Gaps = 20/175 (11%)

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE 208
           T  E            +       +    D      ++ +TP + AA       +  LLE
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE 65

Query: 209 NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGM 268
           +   V     NG+TAL   A          R L E   +L     + G T +H AA    
Sbjct: 66  DR-DVDAVDENGRTALLFVAGL-GSDKCV-RLLAEAGADLDHRDMRGGLTALHMAAG--- 119

Query: 269 YWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK 322
                 Y     V  L+E    A   + D+    TAL LA            +  
Sbjct: 120 ------YVRPEVVEALVE--LGADIEVEDERGL-TALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 91.4 bits (228), Expect = 6e-22
 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 20/160 (12%)

Query: 183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLL 242
              +G     +  +   S   +     +  V  E    +T    AA K D       +LL
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADE-QAL-SQLL 64

Query: 243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKM 301
           E ++  +   D+ G T + + A           G+   V LL E    A  +  D    +
Sbjct: 65  EDRD--VDAVDENGRTALLFVAG---------LGSDKCVRLLAE--AGADLDHRDMRGGL 111

Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA 341
           TALH+AAG    E+V+A++    +  E+ D RG   L  A
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 90.2 bits (225), Expect = 1e-21
 Identities = 36/204 (17%), Positives = 58/204 (28%), Gaps = 41/204 (20%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
           +   +G     +  K GHS                         A         +E  T 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYI---------------AAD------VVSEYETP 47

Query: 157 LHEAVCHKNVDVVKILTKE-DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
              A    +   +  L ++ D D   + + +G+T L   A   S   V  L E    + H
Sbjct: 48  WWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104

Query: 216 EGPN-GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
                G TALH AA      +     L+E   + I+  D+ G T +  A           
Sbjct: 105 RDMRGGLTALHMAAGYVRP-EVV-EALVELGAD-IEVEDERGLTALELARE--------- 152

Query: 275 YGNYGTVNLLLETDQSASNIADKD 298
                     ++       I  + 
Sbjct: 153 ILKTTPKGNPMQ---FGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 44/146 (30%)

Query: 85  EEILEKCPSLLLQ---VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG 138
           E+ L      LL+   V+A    G T L   A  G    V  L E               
Sbjct: 57  EQALS----QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-------------- 98

Query: 139 VGAARQMIKMTN-NEKN-----TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTP 190
            GA        + + ++     TALH A  +   +VV+ L +   D +     +  G T 
Sbjct: 99  -GA--------DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE---VEDERGLTA 146

Query: 191 LYMAAESRSSDMVLALLENSTSVSHE 216
           L +A E   +      ++    +  E
Sbjct: 147 LELAREILKTTPKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 21/136 (15%), Positives = 39/136 (28%), Gaps = 32/136 (23%)

Query: 243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMT 302
           E  + +   T   G                   G+  +          A+++  +    T
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKD---------GHSPSWVPSSY---IAADVVSEYE--T 46

Query: 303 ALHLAAGQGNAEIVDAIISK-NPECYELVDNRGWNFLHYAV------VTRSLINEG---- 351
               AA + + + +  ++   + +    VD  G   L +          R L   G    
Sbjct: 47  PWWTAARKADEQALSQLLEDRDVDA---VDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

Query: 352 ---DAMGNTPLHVLAA 364
                 G T LH +AA
Sbjct: 104 HRDMRGGLTALH-MAA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.4 bits (228), Expect = 3e-22
 Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 37/188 (19%)

Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLY 192
           +E   G+       +       L  A     V+ V+ L +   +P+   + N+ G+ P+ 
Sbjct: 1   MEPAAGS-------SMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQ 50

Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKT-ALHAAAMK--FDLVDTALRKLLEKKENLI 249
           +     S+ +   LL +    +   P   T  +H AA +   D +      L       +
Sbjct: 51  VMMMG-SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL----VVLHRAGAR-L 104

Query: 250 KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG 309
              D +G  P+  A            G+      L       +             + A 
Sbjct: 105 DVRDAWGRLPVDLAEE---------LGHRDVARYLR------AAAGGTRGS-NHARIDAA 148

Query: 310 QGNAEIVD 317
           +G ++I D
Sbjct: 149 EGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 82.1 bits (204), Expect = 7e-19
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 26/161 (16%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM-KFDLVDTALRKLL 242
                  L  AA     + V ALLE   + +     G+  +    M    +       LL
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVA----ELLL 64

Query: 243 EKKENLIKETDQYGWT-PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRK 300
                     D    T P+H AA           G   T+ +L      A  ++ D    
Sbjct: 65  LHGAE-PNCADPATLTRPVHDAARE---------GFLDTLVVLHR--AGARLDVRDAW-G 111

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA 341
              + LA   G+ ++   + +           RG N     
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAA------GGTRGSNHARID 146

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 34/161 (21%), Positives = 48/161 (29%), Gaps = 45/161 (27%)

Query: 207 LENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA 264
           +E +   S E       L  AA +   + V    R LLE   N     + YG  PI    
Sbjct: 1   MEPAAGSSME--PSADWLATAAARGRVEEV----RALLEAGAN-PNAPNSYGRRPIQVMM 53

Query: 265 YHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
                      G+     LLL     A  N AD       +H AA +G  + +  +    
Sbjct: 54  M----------GSARVAELLLL--HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101

Query: 324 PECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
                                   ++  DA G  P+  LA 
Sbjct: 102 AR----------------------LDVRDAWGRLPVD-LAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.7 bits (177), Expect = 3e-15
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 33/140 (23%)

Query: 97  QVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEK 153
             NA    G  P+ V    G + +   L+                 GA        +   
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLH---------------GA---EPNCADPAT 77

Query: 154 NT-ALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210
            T  +H+A     +D + +L +     D     +  G+ P+ +A E    D+   L   +
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRAAA 134

Query: 211 TSVSHEGPNGKTALHAAAMK 230
                    G       A +
Sbjct: 135 GGT-----RGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 8/83 (9%), Positives = 20/83 (24%), Gaps = 30/83 (36%)

Query: 94  LLLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
           +L +    ++ +   G  P+ +A + GH  +  +L                         
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA---------------AG----- 135

Query: 147 KMTNNEKNTALHEAVCHKNVDVV 169
                  +            D+ 
Sbjct: 136 ---GTRGSNHARIDAAEGPSDIP 155

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 88.2 bits (219), Expect = 9e-21
 Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 17/180 (9%)

Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMA----AESRSSDMVLALL 207
            +   +  A      +    L ++  + +   +      LY       +     + + L+
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 208 ENSTSVSHEGPNGKTALHAAAMK--FDLVDTA--LRKLLEKKENLIKETDQYGWTPIHYA 263
                +      G T           D+  T    +  LEK  + I    +     +   
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKN 121

Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIVDAIISK 322
            ++     N          L+    QS   +  KD+  +TAL           +  +   
Sbjct: 122 IFNYFVDEN---EMIPLYKLIF--SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 23/205 (11%), Positives = 57/205 (27%), Gaps = 48/205 (23%)

Query: 99  NAKGD-TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           NA  +   +  AA  G       L E+               G         +  K+  L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEK---------------GY----EDKESVLKSNIL 42

Query: 158 HEAVCHKN----VDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLA------ 205
           ++ + + N      +   L  +  D   R     +G T  +   +   +D+         
Sbjct: 43  YDVLRNNNDEARYKISMFLINKGADIKSR---TKEGTTLFFPLFQGGGNDITGTTELCKI 99

Query: 206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRK----LLEKKENLIKETDQYGWTPIH 261
            LE    ++      K  +      + + +  +      +  +    +   D++G T + 
Sbjct: 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLE 286
           +                  + ++ +
Sbjct: 160 FVKRC---------QKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 27/195 (13%), Positives = 46/195 (23%), Gaps = 26/195 (13%)

Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAL--RKLLE 243
                +  AA   + +  L L E               L+      +          L+ 
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESV-LKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMT 302
           K  + IK   + G T        G   I           + LE  + A      K  K  
Sbjct: 64  KGAD-IKSRTKEGTTLFFPLFQGGGNDITG---TTELCKIFLE--KGADITALYKPYK-I 116

Query: 303 ALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVL 362
            +         +  + I    P    +    G             +   D  G T L  +
Sbjct: 117 VVFKNIFNYFVDENEMI----PLYKLIFSQSGLQ-----------LLIKDKWGLTALEFV 161

Query: 363 AAVRRNEFYDVMIRN 377
              ++     +M   
Sbjct: 162 KRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 8e-11
 Identities = 21/189 (11%), Positives = 49/189 (25%), Gaps = 37/189 (19%)

Query: 35  FKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSL 94
             AA  G  E F ++  +  E         + +  +++    +    +            
Sbjct: 11  SAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISM--------F 60

Query: 95  LLQ----VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
           L+     + ++   G T      + G + I                 LE G       I 
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF-------LEKGAD-----IT 108

Query: 148 MTNNEKNTALHEAVCHKNVDVVK-------ILTKEDPDYRYSANNDGKTPLYMAAESRSS 200
                    + + + +  VD  +       I ++         +  G T L      +  
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQKP 167

Query: 201 DMVLALLEN 209
             +  + + 
Sbjct: 168 IALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 14/161 (8%), Positives = 35/161 (21%), Gaps = 43/161 (26%)

Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK---MTALHLAAGQGN 312
            +  +  AA           G Y     L E  +   +     +       L     +  
Sbjct: 6   EYRTVSAAAM---------LGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEAR 54

Query: 313 AEIVDAIISK--NPECYELVDNRGWNFLHYAV------------VTRSLINEG------D 352
            +I   +I+K  + +        G                    + +  + +G       
Sbjct: 55  YKISMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111

Query: 353 AMGNTPLHVLA------AVRRNEFYDVMIRNTQVNYDAVNK 387
                 +                 Y ++   + +     +K
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK 152

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 18/86 (20%)

Query: 295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV----------VT 344
           ++   +   +  AA  G  E    +  K  E  +       N L+  +          ++
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 345 RSLINEG------DAMGNTPLHVLAA 364
             LIN+G         G T    L  
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQ 84

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 49/277 (17%), Positives = 78/277 (28%), Gaps = 63/277 (22%)

Query: 104 TPLHVAAKFG----HSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
             L      G      G+++FL+    +L   E  E  +G                T L 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTG---------------KTCLP 51

Query: 159 EAVCHKN---VDVVKILTKEDPDYRY----------SANNDGKTPLYMAAESRSSDMVLA 205
           +A+ + +    D + IL                        G+T L++A E R    V  
Sbjct: 52  KALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL 111

Query: 206 LLEN--------------STSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL--I 249
           L+E                         G+  L  AA            L E       +
Sbjct: 112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP-HIV-HYLTENGHKQADL 169

Query: 250 KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE------TDQSASNIADKDRKMTA 303
           +  D  G T +H                    +LLL        D +   + + D   + 
Sbjct: 170 RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL-SP 228

Query: 304 LHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHY 340
           L +AA  G   I   II +     E+ D    +  H+
Sbjct: 229 LMMAAKTGKIGIFQHIIRR-----EIADAAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 44/249 (17%), Positives = 68/249 (27%), Gaps = 63/249 (25%)

Query: 187 GKTPLYMAAESRSSDMVLALLE-------NSTSVSHEGPN-GKTALHAAAM--KFDLVDT 236
            +  L+      S D +  LL          T      P+ GKT L  A +       DT
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 237 ALRKLLEKKENL----------IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLL- 285
               LL+  E             ++    G T +H A                 V LL+ 
Sbjct: 65  I-PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE---------RRCKHYVELLVE 114

Query: 286 ------ETDQSASNIADKDRKM-----TALHLAAGQGNAEIVDAIISKNPECYELVDNRG 334
                    +        +          L LAA      IV  +     +     D   
Sbjct: 115 KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK---QAD--- 168

Query: 335 WNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEH 394
                        +   D+ GNT LH L A+  N       +     YD +  +   +  
Sbjct: 169 -------------LRRQDSRGNTVLHALVAIADN--TRENTKFVTKMYDLLLIKCAKLFP 213

Query: 395 ILDYEHILD 403
             + E +L+
Sbjct: 214 DTNLEALLN 222

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 34/139 (24%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G+ PL +AA      IV +L E                G  +  ++  ++  NT LH  V
Sbjct: 140 GELPLSLAACTNQPHIVHYLTEN---------------GHKQADLRRQDSRGNTVLHALV 184

Query: 162 --CHKNVDVVKILTK-------------EDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206
                  +  K +TK              D +     NNDG +PL MAA++    +   +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 207 LENSTSVSHEGPNGKTALH 225
           +    +            H
Sbjct: 245 IRREIAD----AAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 64  NTILHINII----SKERENVSTEFVEEILEKC------PSLLLQVNAKGDTPLHVAAKFG 113
           NT+LH  +     ++E     T+  + +L KC       +L   +N  G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236

Query: 114 HSGIVTFLVER 124
             GI   ++ R
Sbjct: 237 KIGIFQHIIRR 247

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.5 bits (219), Expect = 8e-20
 Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 51/280 (18%)

Query: 51  REKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGD----TPL 106
           +E   SL    +       +   +++       ++E+ +  P+  L +N   D    TPL
Sbjct: 76  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135

Query: 107 HVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN- 165
           H      +  +V  LV+                G+        +N   + L +AV   N 
Sbjct: 136 HWLTSIANLELVKHLVKH---------------GSN---RLYGDNMGESCLVKAVKSVNN 177

Query: 166 --VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSS-----------DMVLALL--ENS 210
                 + L           ++  +T L+    +              D+++  +  + +
Sbjct: 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237

Query: 211 TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYW 270
             +       ++  +    +          L     N++   D  G T ++ AA      
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR----- 292

Query: 271 INRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAG 309
                GN   V+ LL+    A   IA+K      +   AG
Sbjct: 293 ----LGNISIVDALLD--YGADPFIANKSGL-RPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.0 bits (215), Expect = 3e-19
 Identities = 30/257 (11%), Positives = 71/257 (27%), Gaps = 19/257 (7%)

Query: 126 KLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVD-VVKILTKEDPDYRYSAN 184
           +L   E +E+ + +              N           +  V         +     +
Sbjct: 69  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 128

Query: 185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT-ALRKLLE 243
             G TPL+      + ++V  L+++ ++  +    G++ L  A    +  D+     LL+
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLL-LETDQSASNIADKDRKMT 302
                +   D    T +H+               Y    L+     +    I     +  
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 303 ALHLAAGQGNAEIVDAIISKNPECYELV---DNRGWNFLHYAVVTRSL------------ 347
           +          + +   +        ++   D+ G   L+ A    ++            
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308

Query: 348 INEGDAMGNTPLHVLAA 364
               +  G  P+    A
Sbjct: 309 PFIANKSGLRPVD-FGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 32/151 (21%)

Query: 78  NVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA------------KFGHSGIVTFLVERA 125
           N  +   E +L+     L+  ++   T LH               K+    ++ ++V++ 
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

Query: 126 KLPQHEN-------------------EELESGVGAARQMIKMTNNEKNTALHEAVCHKNV 166
             P                        E          M+   ++  +T L+ A    N+
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAES 197
            +V  L     D  + AN  G  P+   A  
Sbjct: 297 SIVDALLDYGAD-PFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 6e-06
 Identities = 28/206 (13%), Positives = 49/206 (23%), Gaps = 25/206 (12%)

Query: 196 ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQY 255
           +  S D      +++   +          H     F      + K L        E    
Sbjct: 6   KGPSGDNENNGTDDNDRTAGPIITFT---HDLTSDFLSSPLKIMKALPSPVVNDNEQKMK 62

Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEI 315
               +    +               +   L  D S  N           H++      E+
Sbjct: 63  LEAFLQRLLF----------PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112

Query: 316 VDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAMGNTPLHVLA 363
            DA  +        VD  G   LH+        + + L+        GD MG + L    
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172

Query: 364 AVRRNEFYDVMIRNTQVNYDAVNKQN 389
               N             Y  +  ++
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILED 198

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 20/143 (13%)

Query: 183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM-KFDLVDTALRKL 241
                   L  AA     + V  LLE     +     G+  +    M    +       L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVA----ELL 63

Query: 242 LEKKENLIKETDQYGWT-PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDR 299
           L          D    T P+H AA           G   T+ +L      A  ++ D   
Sbjct: 64  LLHGAE-PNCADPATLTRPVHDAAR---------EGFLDTLVVLHR--AGARLDVCDAW- 110

Query: 300 KMTALHLAAGQGNAEIVDAIISK 322
               + LA  QG+ +I   + + 
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 76.3 bits (189), Expect = 5e-17
 Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 28/139 (20%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           ++      D  L  AA  G    V  L+E                GA        N    
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA---------------GAD---PNALNRFGR 46

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKT-PLYMAAESRSSDMVLALLENST 211
             +       +  V ++L     +P+    A+    T P++ AA     D ++ L     
Sbjct: 47  RPIQVM-MMGSAQVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

Query: 212 SVSHEGPNGKTALHAAAMK 230
            +      G+  +  A  +
Sbjct: 103 RLDVCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 25/132 (18%), Positives = 39/132 (29%), Gaps = 33/132 (25%)

Query: 249 IKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLA 307
           I          +  AA           G   TV  LLE    A  N  ++      + + 
Sbjct: 5   IHMLGGSSDAGLATAAA---------RGQVETVRQLLE--AGADPNALNRF-GRRPIQVM 52

Query: 308 AGQGNAEIVDAIISK--NPECYELVDNRGWNF-LHYAV------VTRSLI------NEGD 352
              G+A++ + ++     P C    D       +H A           L       +  D
Sbjct: 53  M-MGSAQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108

Query: 353 AMGNTPLHVLAA 364
           A G  P+  LA 
Sbjct: 109 AWGRLPVD-LAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 28/119 (23%)

Query: 97  QVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEK 153
             NA    G  P+ V    G + +   L+                 GA        +   
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLH---------------GA---EPNCADPAT 77

Query: 154 NT-ALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
            T  +H+A     +D + +L +     D     +  G+ P+ +A E    D+   L   
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 26/87 (29%)

Query: 94  LLLQ----VNAK---GDT-PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM 145
           LLL      N       T P+H AA+ G    +  L                  GA    
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA---------------GAR--- 103

Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKIL 172
           + + +      +  A    + D+ + L
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYL 130

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 82.1 bits (204), Expect = 3e-19
 Identities = 26/135 (19%), Positives = 43/135 (31%), Gaps = 23/135 (17%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           + +  D     A K G    V   V +               G     +  T       L
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAK---------------GED---VNRTLEGGRKPL 44

Query: 158 HEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           H A     +++++ L  +  D +   + +    TPL  A        V  LL      + 
Sbjct: 45  HYAADCGQLEILEFLLLKGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

Query: 216 EGPNGKTALHAAAMK 230
           +GP+G TA  A   +
Sbjct: 102 KGPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 26/139 (18%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKL 241
            +        A ++   D V   +     V+     G+  LH AA     +++     + 
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL-----EF 58

Query: 242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK- 300
           L  K   I   D++  TP+  A Y          G+   V LLL      S  ADK  K 
Sbjct: 59  LLLKGADINAPDKHHITPLLSAVY---------EGHVSCVKLLL------SKGADKTVKG 103

Query: 301 ---MTALHLAAGQGNAEIV 316
              +TA      Q    ++
Sbjct: 104 PDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.1 bits (186), Expect = 8e-17
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
            +  +     A+ + ++D VK    +  D +        G+ PL+ AA+    +++  LL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN---RTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 208 ENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY 265
                ++    +  T L +A  +     V    + LL K  +        G T       
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCV----KLLLSKGAD-KTVKGPDGLTAFEATDN 115

Query: 266 HGM 268
             +
Sbjct: 116 QAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.7 bits (177), Expect = 1e-15
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 31/133 (23%)

Query: 217 GPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
           G         A      D V    +  + K E+ +  T + G  P+HYAA          
Sbjct: 4   GSMCDKEFMWALKNGDLDEV----KDYVAKGED-VNRTLEGGRKPLHYAAD--------- 49

Query: 275 YGNYGTVNLLLETDQSASNIADKDRK----MTALHLAAGQGNAEIVDAIISK--NPECYE 328
            G    +  LL         AD +      +T L  A  +G+   V  ++SK  +     
Sbjct: 50  CGQLEILEFLL------LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK---T 100

Query: 329 LVDNRGWNFLHYA 341
           +    G       
Sbjct: 101 VKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 30/114 (26%), Gaps = 42/114 (36%)

Query: 255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK----MTALHLAAGQ 310
                  +A            G+   V   +      +   D +R        LH AA  
Sbjct: 6   MCDKEFMWALK---------NGDLDEVKDYV------AKGEDVNRTLEGGRKPLHYAADC 50

Query: 311 GNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
           G  EI++ ++ K  +                      IN  D    TPL   A 
Sbjct: 51  GQLEILEFLLLKGAD----------------------INAPDKHHITPLL-SAV 81

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 21/76 (27%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           +NA      TPL  A   GH   V  L+                 GA      +   +  
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLS---------------KGAD---KTVKGPDGL 107

Query: 155 TALHEAVCHKNVDVVK 170
           TA           +++
Sbjct: 108 TAFEATDNQAIKALLQ 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 5e-19
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 20/140 (14%)

Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLE 243
           +G+TPL++AA +   ++V  LLE    V+ +  NG+T LH AA     ++V     KLL 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-----KLLL 55

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMT 302
           +    +   D+ G TP+H AA           G+   V LLLE    A  N  DK+ + T
Sbjct: 56  EAGADVNAKDKNGRTPLHLAAR---------NGHLEVVKLLLE--AGADVNAKDKNGR-T 103

Query: 303 ALHLAAGQGNAEIVDAIISK 322
            LHLAA  G+ E+V  ++  
Sbjct: 104 PLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.2 bits (194), Expect = 8e-18
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 23/131 (17%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AA+ GH  +V  L+E                GA    +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAA 43

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
            + +++VVK+L +   D +   + + +G+TPL++AA +   ++V  LLE    V+ +  N
Sbjct: 44  RNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100

Query: 220 GKTALHAAAMK 230
           G+T LH AA  
Sbjct: 101 GRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 75.8 bits (188), Expect = 5e-17
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 12/118 (10%)

Query: 154 NTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
            T LH A  + +++VVK+L +   D +   + + +G+TPL++AA +   ++V  LLE   
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 212 SVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267
            V+ +  NG+T LH AA     ++V    + LLE   + +   D+ G TP+H AA +G
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVV----KLLLEAGAD-VNAKDKNGRTPLHLAARNG 112

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 69.7 bits (172), Expect = 8e-15
 Identities = 47/149 (31%), Positives = 64/149 (42%), Gaps = 43/149 (28%)

Query: 219 NGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
           NG+T LH AA     ++V    + LLE   + +   D+ G TP+H AA           G
Sbjct: 1   NGRTPLHLAARNGHLEVV----KLLLEAGAD-VNAKDKNGRTPLHLAAR---------NG 46

Query: 277 NYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
           +   V LLLE    A  N  DK+ + T LHLAA  G+ E+V  ++    +          
Sbjct: 47  HLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD---------- 93

Query: 336 NFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
                       +N  D  G TPLH LAA
Sbjct: 94  ------------VNAKDKNGRTPLH-LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 66.2 bits (163), Expect = 1e-13
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 26/117 (22%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK   G TPLH+AA+ GH  +V  L+E                GA    +   +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGR 69

Query: 155 TALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
           T LH A  + +++VVK+L +   D +   + + +G+TPL++AA +   ++V  LLE 
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206
           TN+   T LH A    ++  V+ L +   DP+     ++ G TPL+ A       +V  L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELL 62

Query: 207 LENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAA 264
           L++   V+  G    + LH AA     D+V    + LL    +     + +G  P+ Y  
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIV----KLLLSYGAS-RNAVNIFGLRPVDYTD 117

Query: 265 YHGM 268
              M
Sbjct: 118 DESM 121

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.5 bits (200), Expect = 1e-18
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 30/153 (19%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
           N +G+T LH+A+  G    V +L++                G+      + ++   T LH
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQN---------------GSD---PNVKDHAGWTPLH 48

Query: 159 EAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           EA  H ++ VV++L +     +   +      +PL+ AA++   D+V  LL    S +  
Sbjct: 49  EACNHGHLKVVELLLQHKALVN---TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV 105

Query: 217 GPNGKTALHAAAMK--FDLVDTALRKLLEKKEN 247
              G   +     +    L+      L EK E+
Sbjct: 106 NIFGLRPVDYTDDESMKSLL-----LLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLL 242
            N+ G+T L++A+       V  LL+N +  + +   G T LH A     L      +LL
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL-KVV--ELL 62

Query: 243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKM 301
            + + L+  T     +P+H AA           G+   V LLL     AS N  +     
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAK---------NGHVDIVKLLLS--YGASRNAVNIFGL- 110

Query: 302 TALHLAAGQGNAEIVDAIIS 321
             +     +    ++     
Sbjct: 111 RPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.1 bits (160), Expect = 4e-13
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 30/127 (23%)

Query: 250 KETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAA 308
             T+  G T +H A+           G+  +V  LL+    +  N+ D     T LH A 
Sbjct: 4   PFTNHRGETLLHIASI---------KGDIPSVEYLLQ--NGSDPNVKDHAGW-TPLHEAC 51

Query: 309 GQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLI------NEGDAM 354
             G+ ++V+ ++              +  + LH A       + + L+      N  +  
Sbjct: 52  NHGHLKVVELLLQHKALVNT---TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108

Query: 355 GNTPLHV 361
           G  P+  
Sbjct: 109 GLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 50.1 bits (121), Expect = 7e-08
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 18/86 (20%)

Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VT 344
           +     R  T LH+A+ +G+   V+ ++    +P      D+ GW  LH A       V 
Sbjct: 3   DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVV 59

Query: 345 RSLI------NEGDAMGNTPLHVLAA 364
             L+      N      ++PLH  AA
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLH-DAA 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.2 bits (194), Expect = 8e-18
 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTA 237
            + +   +D    L  AA +   D V  L+ N   V+ +   G T L+ A     L +  
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL-EIV 63

Query: 238 LRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIAD 296
             ++L K    +   D  G+TP+H AA+          G+     +LL+    A  N  D
Sbjct: 64  --EVLLKNGADVNAVDAIGFTPLHLAAF---------IGHLEIAEVLLK--HGADVNAQD 110

Query: 297 KDRKMTALHLAAGQGNAEIVDAIISKN 323
           K  K TA  ++ G GN ++ + +   N
Sbjct: 111 KFGK-TAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.6 bits (177), Expect = 2e-15
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 19/132 (14%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
            +     L  AA+ G    V  L+                 GA    +   +    T L+
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMAN---------------GAD---VNAKDEYGLTPLY 52

Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
            A  H ++++V++L K   D   + +  G TPL++AA     ++   LL++   V+ +  
Sbjct: 53  LATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

Query: 219 NGKTALHAAAMK 230
            GKTA   +   
Sbjct: 112 FGKTAFDISIGN 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 40/155 (25%)

Query: 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
           H G +    L  AA +    D   R L+    + +   D+YG TP++ A           
Sbjct: 9   HHGSDLGKKLLEAA-RAGQDDEV-RILMANGAD-VNAKDEYGLTPLYLATA--------- 56

Query: 275 YGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNR 333
           +G+   V +LL+    A  N  D     T LHLAA  G+ EI + ++             
Sbjct: 57  HGHLEIVEVLLK--NGADVNAVDAIGF-TPLHLAAFIGHLEIAEVLLKH----------- 102

Query: 334 GWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRN 368
           G +           +N  D  G T   +  ++   
Sbjct: 103 GAD-----------VNAQDKFGKTAFDI--SIGNG 124

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.9 bits (149), Expect = 1e-11
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 22/116 (18%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK   G TPL++A   GH  IV  L++                GA    +   +    
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------------GAD---VNAVDAIGF 81

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210
           T LH A    ++++ ++L K   D   + +  GKT   ++  + + D+   L + +
Sbjct: 82  TPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 80.8 bits (199), Expect = 7e-17
 Identities = 38/282 (13%), Positives = 77/282 (27%), Gaps = 51/282 (18%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           + A+      +AA+ GH  ++  L E                 A  +++ M   E   A 
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCEL----------------APTEIMAMIQAENYHAF 167

Query: 158 HEAVCHKNVDVVKILTKEDPDYRYS-ANNDGKTPLYMAAESRS-SDMVLALLENSTSVSH 215
             A  + ++ V+  L +  P    +    +       AA  R   +++  LL+    +++
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227

Query: 216 EGPNGKTALHAAAMKFDLV--------DTALRKLLEK--KENLIKETDQYGWTPIHYAAY 265
              +           F             A +        + + K     G+  +     
Sbjct: 228 AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIR 287

Query: 266 HGMYWINRFYGNYGTVNLLLETD--QSASNIADKDRK-MTALHLAAGQGNAEIVDAIISK 322
                          +  LL     ++ +  A         L LA   GN      ++S 
Sbjct: 288 RN------DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS- 340

Query: 323 NPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
            P    L     +   +            +  G   L  +A 
Sbjct: 341 IPSVLALTKANNY---YIN----------ETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 36/267 (13%), Positives = 69/267 (25%), Gaps = 59/267 (22%)

Query: 81  TEFVEEILEKCPSLLLQ-VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139
              +  + E  P+ ++  + A+      +AA+ GH  ++  L E A              
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA-------------- 186

Query: 140 GAARQMIKMTNNEKNTALHEAVCHKN-VDVVKILTKEDPDYRYSANN------------- 185
               +   M   E   A   A   +   +V+  L        Y+  +             
Sbjct: 187 --PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI 244

Query: 186 ----DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK-----FDLVDT 236
               +    ++ A +  + D V  L+        E   G   L     +      D +  
Sbjct: 245 ARHVNRLKEMHDAFKLSNPDGVFDLVTK-----SECLQGFYMLRNLIRRNDEVLLDDIRF 299

Query: 237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIAD 296
            L     K               +  A            GN G   LLL     +     
Sbjct: 300 LLSIPGIKALAPTATIPGDANELLRLAL---------RLGNQGACALLLS--IPSVLALT 348

Query: 297 KDRKMTALHLAAGQGNAEIVDAIISKN 323
           K       ++    G  ++    +  +
Sbjct: 349 KA---NNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 49/385 (12%), Positives = 101/385 (26%), Gaps = 89/385 (23%)

Query: 6   MSSVSIETGEAPLLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRN- 64
           M +++I   E    D    +    +    F+     N      ++ ++   +    T+N 
Sbjct: 1   MCNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNM 60

Query: 65  --TILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSG---IVT 119
                 + +        + +   +  +K          K +    VAA  G S     + 
Sbjct: 61  EQVRQLLCLYYAHYNRNAKQLWSDAHKK--------GIKSEVICFVAAITGCSSALDTLC 112

Query: 120 FLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY 179
            L+                      ++K+   E   A   A  + ++ V+  L +  P  
Sbjct: 113 LLLT---------------SDE---IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 154

Query: 180 RYS-ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE--GPNGKTALHAAAMKFDLVDT 236
             +    +      +AAE+    ++  L E + + +          A   AA+     + 
Sbjct: 155 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214

Query: 237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIAD 296
               LL+                + YA  H        YG       +      A ++  
Sbjct: 215 I-NFLLDCPVM------------LAYAEIHE-----FEYGEKYVNPFI------ARHVNR 250

Query: 297 KDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV---------VTRSL 347
                 A  L+   G  ++V                 G+  L   +           R L
Sbjct: 251 LKEMHDAFKLSNPDGVFDLVTKSECLQ----------GFYMLRNLIRRNDEVLLDDIRFL 300

Query: 348 I-----------NEGDAMGNTPLHV 361
           +                  N  L +
Sbjct: 301 LSIPGIKALAPTATIPGDANELLRL 325

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.4 bits (179), Expect = 7e-16
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G+TPLH AAK GH+  V  L+ +               GA    +   + + NT LH A 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSK---------------GAD---VNARSKDGNTPLHLAA 50

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
            + + ++VK+L  +  D   + + DG TP ++A ++   ++V  L      V+       
Sbjct: 51  KNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109

Query: 222 TALH 225
              H
Sbjct: 110 HHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.7 bits (172), Expect = 5e-15
 Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 38/143 (26%)

Query: 219 NGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY 278
           +G T LH AA      +   +KLL K  + +    + G TP+H AA           G+ 
Sbjct: 8   DGNTPLHNAAKNGHA-EEV-KKLLSKGAD-VNARSKDGNTPLHLAAK---------NGHA 55

Query: 279 GTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNF 337
             V LLL   + A  N   KD   T  HLA   G+ EIV  + +K  +            
Sbjct: 56  EIVKLLLA--KGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGAD------------ 100

Query: 338 LHYAVVTRSLINEGDAMGNTPLH 360
                     +N      +   H
Sbjct: 101 ----------VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.5 bits (143), Expect = 4e-11
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 22/98 (22%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNA+   G+TPLH+AAK GH+ IV  L+ +               GA    +   + + N
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAK---------------GAD---VNARSKDGN 76

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
           T  H A  + + ++VK+L  +  D   + +       +
Sbjct: 77  TPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.8 bits (97), Expect = 8e-05
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 24/72 (33%)

Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGD 352
               KD   T LH AA  G+AE V  ++SK           G +           +N   
Sbjct: 3   MWGSKDGN-TPLHNAAKNGHAEEVKKLLSK-----------GAD-----------VNARS 39

Query: 353 AMGNTPLHVLAA 364
             GNTPLH LAA
Sbjct: 40  KDGNTPLH-LAA 50

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 6e-14
 Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 23/110 (20%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           G TPLH+AA+ GH  +V  L+E                GA    +   +    T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAA 43

Query: 162 CHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
            + +++VVK+L +   D +   + + +G+TPL++AA +   ++V  LLE 
Sbjct: 44  RNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 20/107 (18%)

Query: 219 NGKTALHAAAMK--FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
           NG+T LH AA     ++V    + LLE   + +   D+ G TP+H AA           G
Sbjct: 1   NGRTPLHLAARNGHLEVV----KLLLEAGAD-VNAKDKNGRTPLHLAAR---------NG 46

Query: 277 NYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAEIVDAIISK 322
           +   V LLLE    A  N  DK+ + T LHLAA  G+ E+V  ++  
Sbjct: 47  HLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.1 bits (147), Expect = 8e-12
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLE 243
           +G+TPL++AA +   ++V  LLE    V+ +  NG+T LH AA     ++V     KLL 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV-----KLLL 55

Query: 244 KKENLIKETDQYGWTPIHYAAYHG 267
           +    +   D+ G TP+H AA +G
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 54.7 bits (133), Expect = 6e-10
 Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 36/110 (32%)

Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAE 314
           G TP+H AA           G+   V LLLE    A  N  DK+ + T LHLAA  G+ E
Sbjct: 2   GRTPLHLAAR---------NGHLEVVKLLLE--AGADVNAKDKNGR-TPLHLAARNGHLE 49

Query: 315 IVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
           +V  ++    +                      +N  D  G TPLH LAA
Sbjct: 50  VVKLLLEAGAD----------------------VNAKDKNGRTPLH-LAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.9 bits (118), Expect = 8e-08
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 21/78 (26%)

Query: 98  VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
           VNAK   G TPLH+AA+ GH  +V  L+E                GA    +   +    
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLE---------------AGAD---VNAKDKNGR 69

Query: 155 TALHEAVCHKNVDVVKIL 172
           T LH A  + +++VVK+L
Sbjct: 70  TPLHLAARNGHLEVVKLL 87

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.7 bits (156), Expect = 6e-13
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           + +     L  AA+ G    V  L+                 GA    +   +   +T L
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMAN---------------GAD---VAAKDKNGSTPL 61

Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206
           H A  + +++VVK+L +   D   + +  GKT   ++ ++ + D+   L
Sbjct: 62  HLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 26/124 (20%)

Query: 109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDV 168
            +   H    + LV R               G+         ++    L EA      D 
Sbjct: 1   GSSHHHHHHSSGLVPR---------------GSH------MGSDLGKKLLEAARAGQDDE 39

Query: 169 VKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
           V+IL     D     + + +G TPL++AA +   ++V  LLE    V  +   GKTA   
Sbjct: 40  VRILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96

Query: 227 AAMK 230
           +   
Sbjct: 97  SIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 30/160 (18%), Positives = 45/160 (28%), Gaps = 51/160 (31%)

Query: 160 AVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
              H +      L            +D    L  AA +   D V  L+ N       G +
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMAN-------GAD 49

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
                                        +   D+ G TP+H AA           G+  
Sbjct: 50  -----------------------------VAAKDKNGSTPLHLAAR---------NGHLE 71

Query: 280 TVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
            V LLLE    A   A      TA  ++   GN ++ + +
Sbjct: 72  VVKLLLE--AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NIADKDRKMTALHLAAGQGNAE 314
               +  AA           G    V +L+     A     DK+   T LHLAA  G+ E
Sbjct: 24  LGKKLLEAAR---------AGQDDEVRILMA--NGADVAAKDKNGS-TPLHLAARNGHLE 71

Query: 315 IVDAIISKNPECYELVDNRGWNFLHYAV 342
           +V  ++    +     D  G      ++
Sbjct: 72  VVKLLLEAGADVXA-QDKFGKTAFDISI 98

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 30/92 (32%)

Query: 274 FYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
            + ++   + L+         +         L  AA  G  + V  +++   +       
Sbjct: 3   SHHHHHHSSGLV------PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD------- 49

Query: 333 RGWNFLHYAVVTRSLINEGDAMGNTPLHVLAA 364
                          +   D  G+TPLH LAA
Sbjct: 50  ---------------VAAKDKNGSTPLH-LAA 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 4e-09
 Identities = 62/420 (14%), Positives = 131/420 (31%), Gaps = 93/420 (22%)

Query: 19  LD-STGEISQSQMD------PKFFKAAADGNVEPFKDMAR-----EKIESLLTAKTR--N 64
           +D  TGE      D        F     + + +  +DM +     E+I+ ++ +K     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVD---NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 65  TILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVER 124
           T+     +  ++E +  +FVEE+L      L+       +P+    +        ++ +R
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM-------SPIKTEQRQPSMMTRMYIEQR 116

Query: 125 AKLPQHENEEL-------ESGVGAARQMIKMTNNEKNTALHEAV-CHKNVDVVKILTKED 176
            +L  ++N+                RQ +      KN  +   +   K    + +     
Sbjct: 117 DRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--- 172

Query: 177 PDYRYSANNDGKTPLYM-AAESRSSDMVLALLEN-STSVSHEGPNGKTALHAAAMKFDLV 234
             Y+     D K   ++      S + VL +L+     +     +         ++   +
Sbjct: 173 -SYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 235 DTALRKLLEKKEN----LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS 290
              LR+LL+ K      L+                      N F  N     LL    + 
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNV-QNAKA---------WNAF--NLSCKILLTTRFKQ 276

Query: 291 ASNI--ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLI 348
            ++   A     ++  H +      E V +++ K              +L      + L 
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLK--------------YLD--CRPQDLP 319

Query: 349 NEGDAMGNTPLHV--LAAVRRN-----EFYDVMIRNTQVNYDAVNK-QNVSVEHILDYEH 400
            E   +   P  +  +A   R+     + +        VN D +      S+  +   E+
Sbjct: 320 RE--VLTTNPRRLSIIAESIRDGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEY 371

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR 273
           ++     +TALH A    D     +   L +    + +    G T +HY           
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT------- 215

Query: 274 FYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGQGNAEIVD 317
              N   + LLL   +  ++I   +    T L +A    +    +
Sbjct: 216 --DNAECLKLLL---RGKASIEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 18/118 (15%)

Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
             +T LH+A +   S   T L     L Q+               +     + +TALH  
Sbjct: 168 PDETALHLAVR---SVDRTSLHIVDFLVQNSGN------------LDKQTGKGSTALHYC 212

Query: 161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV--LALLENSTSVSHE 216
               N + +K+L +        AN  G+TPL +A   +       L    +    SH 
Sbjct: 213 CLTDNAECLKLLLRGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 21/111 (18%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVE 123
            T LH+   +    + ++  + + L +    L +   KG T LH      ++  +  L+ 
Sbjct: 170 ETALHL---AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 124 RAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK 174
                            A    I++ N    T L  A   K+    ++LT+
Sbjct: 227 G---------------KA---SIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 149 TNNEKNTALHEAVCHKN---VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
            +    TALH AV   +   + +V  L +   +        G T L+    + +++ +  
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNAECLKL 223

Query: 206 LLENSTSVSHEGPNGKTALH-AAAMKFDLVDTALRKLLEKKENLIKETDQYGW 257
           LL    S+     +G+T L  A  +K +  +  L + L  + N     + Y W
Sbjct: 224 LLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE-YEW 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPN------GKTALHAAAMKFDLVDTALRKLLEKK 245
           + A  +R    VL    N        P        +  LH A    +     L   + + 
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 246 ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH 305
              +      G T +HYAA +              + LLL   ++     ++  + TAL 
Sbjct: 216 GGHLDAKAADGNTALHYAALY---------NQPDCLKLLL-KGRALVGTVNEAGE-TALD 264

Query: 306 LAAGQGNAEIVD 317
           +A  + + E  +
Sbjct: 265 IARKKHHKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 23/123 (18%)

Query: 91  CPSLLLQVNAKGDTPLHVAAKFGHSG---IVTFLVERAKLPQHENEELESGVGAARQMIK 147
            P       A  +  LH+A K  +     +V F++      Q+         G     + 
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII------QN---------GG---HLD 220

Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
               + NTALH A  +   D +K+L K       + N  G+T L +A +    +    LL
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECE-ELL 278

Query: 208 ENS 210
           E +
Sbjct: 279 EQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 9e-05
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 25/92 (27%)

Query: 94  LLLQ-------VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMI 146
            ++Q         A G+T LH AA +     +  L++                 A   ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG---------------RA---LV 252

Query: 147 KMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178
              N    TAL  A    + +  ++L +    
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 20/121 (16%)

Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
              TPL  A          FL++                GA    +   ++     LH A
Sbjct: 234 DNATPLIQATAANSLLACEFLLQN---------------GAN---VNQADSAGRGPLHHA 275

Query: 161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG 220
               +  +  +  K   D   + +++G+ PL +A E+ ++D+V  LL  +     E   G
Sbjct: 276 TILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQG 333

Query: 221 K 221
           +
Sbjct: 334 Q 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 16/161 (9%)

Query: 174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV--SHEGPNGKTALHAAAMKF 231
            E P     + + G      +    S   +   L +   V   + G +  T L  A    
Sbjct: 187 PEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAAN 246

Query: 232 DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSA 291
            L+      LL+   N + + D  G  P+H+A            G+ G   L L+     
Sbjct: 247 SLLACEF--LLQNGAN-VNQADSAGRGPLHHATI---------LGHTGLACLFLKRGADL 294

Query: 292 SNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
               D + +   L +A    NA+IV  +        E    
Sbjct: 295 -GARDSEGR-DPLTIAMETANADIVTLLRLAKMREAEAAQG 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-57  Score=421.02  Aligned_cols=350  Identities=23%  Similarity=0.308  Sum_probs=291.8

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      -.+|||.|+..|++++|++|+++|.+++..+..|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   87 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCA   87 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHH
Confidence            35679999999999999999999988887888899999999  999999999999873    667788888999999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhh---------hHHHHH------hhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGV---------GAARQM------IKMTNNEKNTALHEAVCHKNVDVVKILTK  174 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~---------~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  174 (405)
                      +..|+.++|++|+++|++++..+....+.+         ...+.+      .+..+..|.||||+|+..|+.+++++|++
T Consensus        88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  167 (437)
T 1n11_A           88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  167 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999988764433221111         111222      22345678888888888888888888888


Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc
Q 040751          175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ  254 (405)
Q Consensus       175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~  254 (405)
                      +|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.  +++++|++.+.. ++..+.
T Consensus       168 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~-~~~~~~  243 (437)
T 1n11_A          168 RDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV--EVARSLLQYGGS-ANAESV  243 (437)
T ss_dssp             TTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCT
T ss_pred             CCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CCCCCC
Confidence            888877 6777888888888888888888888888888888888888888888888888  888888887665 677778


Q ss_pred             CCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCC
Q 040751          255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRG  334 (405)
Q Consensus       255 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g  334 (405)
                      .|.||||+|+..|         +.+++++|++.+.+. +... ..|.||||+|+..|+.+++++|+++|+++ +.++..|
T Consensus       244 ~g~t~L~~A~~~g---------~~~~v~~Ll~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g  311 (437)
T 1n11_A          244 QGVTPLHLAAQEG---------HAEMVALLLSKQANG-NLGN-KSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMG  311 (437)
T ss_dssp             TCCCHHHHHHHTT---------CHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSC
T ss_pred             CCCCHHHHHHHCC---------CHHHHHHHHhcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCC
Confidence            8888888888887         557899999988876 3333 48899999999999999999999999987 7889999


Q ss_pred             ChHHHHHHHhcc------------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccccc
Q 040751          335 WNFLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHIL  402 (405)
Q Consensus       335 ~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~  402 (405)
                      .||||+|+..++            ++|.+|..|.||||+|++.|+.+++++|+++ |++++.+|..|+||+++|.+.++.
T Consensus       312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCcH
Confidence            999999998887            6888999999999999999999999999997 999999999999999999988764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-52  Score=390.34  Aligned_cols=320  Identities=27%  Similarity=0.321  Sum_probs=252.6

Q ss_pred             HHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCc
Q 040751           52 EKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHE  131 (405)
Q Consensus        52 ~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~  131 (405)
                      .|++.+..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+..|+.++|++|+++|++++  
T Consensus         3 ~g~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--   74 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVA--SFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN--   74 (437)
T ss_dssp             ------------CCHHHHH--HHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS--
T ss_pred             CCCCccccCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--
Confidence            4566677788899999999  99999999999987    367788889999999999999999999999999999865  


Q ss_pred             hhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 040751          132 NEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST  211 (405)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~  211 (405)
                                      .++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++++
T Consensus        75 ----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  137 (437)
T 1n11_A           75 ----------------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEA  137 (437)
T ss_dssp             ----------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ----------------CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence                            566677777777777777777777777777766 566677777777777777777777777777


Q ss_pred             CCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhc----------------
Q 040751          212 SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY----------------  275 (405)
Q Consensus       212 ~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l----------------  275 (405)
                      +++..+..|.||||.|+..|+.  +++++|++.+.. ++..+..|.||||+|+..|+.++.+++                
T Consensus       138 ~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  214 (437)
T 1n11_A          138 SQACMTKKGFTPLHVAAKYGKV--RVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT  214 (437)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCC
T ss_pred             CCcCCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence            7777677777777777777777  777777766554 556666677777777777766555544                


Q ss_pred             --------cccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc-
Q 040751          276 --------GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS-  346 (405)
Q Consensus       276 --------~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~-  346 (405)
                              ++.+++++|++.+.+. +... ..|.||||+|+..|+.+++++|++++++. +..+..|.||||+|+..++ 
T Consensus       215 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~  291 (437)
T 1n11_A          215 PLHIAAKQNQVEVARSLLQYGGSA-NAES-VQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHV  291 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCH
Confidence                    3567888888888766 3333 47889999999999999999999999887 7789999999999988877 


Q ss_pred             -----------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          347 -----------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       347 -----------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                                 .++.++..|.||||+|+..|+.+++++|+++ |++++.+|..|+||||+|++.++.+
T Consensus       292 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~  358 (437)
T 1n11_A          292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTD  358 (437)
T ss_dssp             HHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHH
Confidence                       5788899999999999999999999999998 9999999999999999999988654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.7e-46  Score=333.69  Aligned_cols=292  Identities=20%  Similarity=0.187  Sum_probs=252.5

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhh-ccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTA-KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHV  108 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~  108 (405)
                      -.++||.|++.|++++|++||+.|++++..+ ..|+||||+|  +..|+.+++++|++    .+..++..+..+.+|++.
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHH----cCCchhhhccCCCchhHH
Confidence            3578999999999999999999999988555 4599999999  99999999999988    578888999999999999


Q ss_pred             HHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc-------
Q 040751          109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY-------  181 (405)
Q Consensus       109 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-------  181 (405)
                      ++..+...++..+++++++.                  +..+..|.||||+|+..|+.+++++|+++|++++.       
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~------------------~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~  160 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED  160 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC--
T ss_pred             HHhcccchhhHHhhhccchh------------------hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccc
Confidence            99999999999999999884                  48899999999999999999999999999988762       


Q ss_pred             --ccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCc--cHHHHHHHHHhhhhhhhhcccCC
Q 040751          182 --SANNDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDL--VDTALRKLLEKKENLIKETDQYG  256 (405)
Q Consensus       182 --~~~~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~--~~~~v~~Ll~~~~~~~~~~~~~~  256 (405)
                        ..+..|.||||+|+..|+.+++++|++ .|++++.++..|.|+++.++..+..  ...++++|++.+.+ ++.++..|
T Consensus       161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g  239 (337)
T 4g8k_A          161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERG  239 (337)
T ss_dssp             ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGG
T ss_pred             cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCC
Confidence              234568999999999999999999995 5999999999999999988876543  12466777777655 78899999


Q ss_pred             CCHHHHHHHcChhhhhhhccccchhHHHHhh-cccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 040751          257 WTPIHYAAYHGMYWINRFYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW  335 (405)
Q Consensus       257 ~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  335 (405)
                      .||||+|+..|         +.++++.|++. +.++ +..+ ..|+||||+|++.|+.+++++|+++|+++         
T Consensus       240 ~t~L~~a~~~~---------~~~~v~~Ll~~~~~~v-n~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~---------  299 (337)
T 4g8k_A          240 KTPLILAVEKK---------HLGLVQRLLEQEHIEI-NDTD-SDGKTALLLAVELKLKKIAELLCKRGAST---------  299 (337)
T ss_dssp             CCHHHHHHHTT---------CHHHHHHHHTSTTCCT-TCBC-TTSCBHHHHHHHTTCHHHHHHHHTTSCSS---------
T ss_pred             CCHHHHHHHhh---------hhHHHHHHHHhcCCcc-cCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC---------
Confidence            99999999998         45688888875 4444 4444 48999999999999999999999999875         


Q ss_pred             hHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccc
Q 040751          336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV  385 (405)
Q Consensus       336 t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~  385 (405)
                                        +..+|||+|++.|+.++|++||++ ||++|..
T Consensus       300 ------------------n~~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~  330 (337)
T 4g8k_A          300 ------------------DCGDLVMTARRNYDHSLVKVLLSH-GAKEDFH  330 (337)
T ss_dssp             ------------------TTCCHHHHHHHTTCHHHHHHHHHT-TCCC---
T ss_pred             ------------------CCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC
Confidence                              234699999999999999999998 9999964

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.8e-44  Score=313.98  Aligned_cols=269  Identities=20%  Similarity=0.229  Sum_probs=230.6

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccc-cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhh
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQV-NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVG  140 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~  140 (405)
                      +|.||||+|  +..|+.+++++|++    .+..++.. +..|.||||+|+..|+.+++++|+++|++++           
T Consensus         4 ~g~~~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-----------   66 (285)
T 1wdy_A            4 EDNHLLIKA--VQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----------   66 (285)
T ss_dssp             HHHHHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred             ccchHHHHH--HHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-----------
Confidence            488999999  99999999988877    34556655 7778999999999999999999999998854           


Q ss_pred             HHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----
Q 040751          141 AARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE----  216 (405)
Q Consensus       141 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~----  216 (405)
                             ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..    
T Consensus        67 -------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~  138 (285)
T 1wdy_A           67 -------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK  138 (285)
T ss_dssp             -------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred             -------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH
Confidence                   678889999999999999999999999999987 77888999999999999999999999999998877    


Q ss_pred             ------CCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccc
Q 040751          217 ------GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS  290 (405)
Q Consensus       217 ------~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~  290 (405)
                            +..|.||||.|+..++.  +++++|++..+..++..+..|.||||+|+..+.....     .+++++|++.+.+
T Consensus       139 ~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----~~i~~~Ll~~g~~  211 (285)
T 1wdy_A          139 EDQERLRKGGATALMDAAEKGHV--EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----EAITHLLLDHGAD  211 (285)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHTCH--HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH-----HHHHHHHHHTTCC
T ss_pred             HHHHhhccCCCcHHHHHHHcCCH--HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH-----HHHHHHHHHcCCC
Confidence                  67789999999999999  9999999885555788889999999999988742111     4688999999987


Q ss_pred             ccccccccCCccHHHHHHhcCCHHHHHHHHh-cCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcH
Q 040751          291 ASNIADKDRKMTALHLAAGQGNAEIVDAIIS-KNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE  369 (405)
Q Consensus       291 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~  369 (405)
                      + +... ..|.||||+|+..++.+++++|++ .|++                      ++.+|..|.||||+|++.|+.+
T Consensus       212 ~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------------------~~~~~~~g~t~l~~A~~~~~~~  267 (285)
T 1wdy_A          212 V-NVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIE----------------------INDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             S-SCCC-TTSCCHHHHHHHTTCHHHHHHHHHSSSCC----------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             C-CCcC-CCCCcHHHHHHHcCCHHHHHHHHhccCCC----------------------ccccCCCCCcHHHHHHHcCcHH
Confidence            6 3333 489999999999999999999999 5555                      5667788999999999999999


Q ss_pred             HHHHHHhccccccccccC
Q 040751          370 FYDVMIRNTQVNYDAVNK  387 (405)
Q Consensus       370 ~v~~Ll~~~g~d~~~~~~  387 (405)
                      ++++|+++ |++++.+|.
T Consensus       268 i~~~Ll~~-Ga~~~~~d~  284 (285)
T 1wdy_A          268 IAELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHHHHH-SSCSCCSSC
T ss_pred             HHHHHHHc-CCCCCcccc
Confidence            99999998 999998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.5e-44  Score=323.23  Aligned_cols=297  Identities=19%  Similarity=0.176  Sum_probs=234.2

Q ss_pred             hhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccC
Q 040751           47 KDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK  126 (405)
Q Consensus        47 ~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  126 (405)
                      ..+++.+.+....+..+.++||.|  +..|+.+.++.++.   ..+..++..|..|.||||+|+..|+.++|++|+++|+
T Consensus         8 l~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~   82 (351)
T 3utm_A            8 LDLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA   82 (351)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            345566677777777799999999  99999888877754   4567778888999999999999999999999999998


Q ss_pred             CCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040751          127 LPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL  206 (405)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L  206 (405)
                      +++                  ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|
T Consensus        83 ~~~------------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~L  143 (351)
T 3utm_A           83 DVH------------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLL  143 (351)
T ss_dssp             CTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CCC------------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            854                  778889999999999999999999999999987 6788899999999999999999999


Q ss_pred             HHcCCCCcccCCCCCcHHHHHHhcCCc-------------------cHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751          207 LENSTSVSHEGPNGKTALHAAAMKFDL-------------------VDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG  267 (405)
Q Consensus       207 l~~g~~~~~~~~~~~t~L~~a~~~~~~-------------------~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  267 (405)
                      +++|++++..+..+.+|++.|+..+..                   ....+..++..... ....+..|.||||+|+..+
T Consensus       144 l~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~  222 (351)
T 3utm_A          144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASL  222 (351)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCC
T ss_pred             HHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHh
Confidence            999999999999999988876544333                   00333333333222 1234566778888888774


Q ss_pred             hhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccc
Q 040751          268 MYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL  347 (405)
Q Consensus       268 ~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  347 (405)
                      +..      ..+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|+++|++                      
T Consensus       223 ~~~------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------------------  272 (351)
T 3utm_A          223 HPK------RKQVAELLLRKGANV-NEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAK----------------------  272 (351)
T ss_dssp             STT------HHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------
T ss_pred             Ccc------HHHHHHHHHHcCCCc-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------------
Confidence            321      335777888877766 3333 3777888888888888888888887765                      


Q ss_pred             cccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751          348 INEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       348 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                      ++.+|..|+||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|.+.
T Consensus       273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          273 MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHSCHH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhhhHH
Confidence            566778899999999999999999999998 999999999999999998653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.7e-43  Score=316.68  Aligned_cols=282  Identities=19%  Similarity=0.191  Sum_probs=246.2

Q ss_pred             ccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccC-CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhh
Q 040751           61 KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNA-KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV  139 (405)
Q Consensus        61 ~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  139 (405)
                      .+|.|+||.|  +..|+.+++++|++.    +.+++..+. .|+||||+|+..|+.++|++|+++|++++          
T Consensus        23 ~~~~t~L~~A--v~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~----------   86 (337)
T 4g8k_A           23 VEDNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------   86 (337)
T ss_dssp             HHHHHHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred             CCCChHHHHH--HHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh----------
Confidence            3488999999  999999999999883    677887765 59999999999999999999999999864          


Q ss_pred             hHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc---
Q 040751          140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE---  216 (405)
Q Consensus       140 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~---  216 (405)
                              ..+..+.++++.++..+...++..+++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..   
T Consensus        87 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~  157 (337)
T 4g8k_A           87 --------LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT  157 (337)
T ss_dssp             --------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC
T ss_pred             --------hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc
Confidence                    788899999999999999999999999999998 78999999999999999999999999999988754   


Q ss_pred             -------CCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751          217 -------GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ  289 (405)
Q Consensus       217 -------~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~  289 (405)
                             +..|.||||+|+..|+.  +++++|+...+.+++.++..|.|+++.++..+...-     ...++++|+++|.
T Consensus       158 ~~~~~~~~~~g~T~L~~A~~~g~~--~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~-----~~~i~~lLl~~ga  230 (337)
T 4g8k_A          158 KEDQERLRKGGATALMDAAEKGHV--EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-----VEAITHLLLDHGA  230 (337)
T ss_dssp             C-----CTTCSCCHHHHHHHHTCH--HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT-----HHHHHHHHHHTTC
T ss_pred             ccccccccCCCCcHHHHHHHCCCH--HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc-----HHHHHHHHHHCCC
Confidence                   34588999999999999  999999987666689999999999999887653211     1247899999998


Q ss_pred             cccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcH
Q 040751          290 SASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE  369 (405)
Q Consensus       290 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~  369 (405)
                      ++ +..+ ..|.||||+|+..++.+++++|++.+...                     ++.+|..|+||||+|++.|+.+
T Consensus       231 d~-n~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---------------------vn~~d~~G~TpL~~A~~~g~~~  287 (337)
T 4g8k_A          231 DV-NVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIE---------------------INDTDSDGKTALLLAVELKLKK  287 (337)
T ss_dssp             CT-TCCC-GGGCCHHHHHHHTTCHHHHHHHHTSTTCC---------------------TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             CC-CCcC-CCCCCHHHHHHHhhhhHHHHHHHHhcCCc---------------------ccCcCCCCCCHHHHHHHcCCHH
Confidence            87 4444 48999999999999999999999864332                     6777888999999999999999


Q ss_pred             HHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          370 FYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       370 ~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      +|++||++ |+|+|.     ++||++|++.+..+
T Consensus       288 iv~~Ll~~-GAd~n~-----~~~L~~A~~~~~~~  315 (337)
T 4g8k_A          288 IAELLCKR-GASTDC-----GDLVMTARRNYDHS  315 (337)
T ss_dssp             HHHHHHTT-SCSSTT-----CCHHHHHHHTTCHH
T ss_pred             HHHHHHHC-CCCCCC-----CCHHHHHHHcCCHH
Confidence            99999998 999985     46999999987654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-42  Score=303.13  Aligned_cols=262  Identities=21%  Similarity=0.218  Sum_probs=235.3

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhh-hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLT-AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      .++|+.|++.|++++|++|++.|.+.+.. +..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence            46799999999999999999999887755 77799999999  99999999999987    4677888999999999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc------
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA------  183 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~------  183 (405)
                      +..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++...      
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~  141 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVN------------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  141 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT------------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCC------------------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence            99999999999999998854                  788999999999999999999999999999987321      


Q ss_pred             ---CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHhcCC----ccHHHHHHHHHhhhhhhhhcccC
Q 040751          184 ---NNDGKTPLYMAAESRSSDMVLALLEN-STSVSHEGPNGKTALHAAAMKFD----LVDTALRKLLEKKENLIKETDQY  255 (405)
Q Consensus       184 ---~~~g~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~----~~~~~v~~Ll~~~~~~~~~~~~~  255 (405)
                         +..|.||||+|+..|+.+++++|+++ |++++..+..|.||||.|+..+.    .  +++++|++.+.+ ++.++..
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~--~i~~~Ll~~g~~-~~~~~~~  218 (285)
T 1wdy_A          142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE--AITHLLLDHGAD-VNVRGER  218 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHH--HHHHHHHHTTCC-SSCCCTT
T ss_pred             HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHH--HHHHHHHHcCCC-CCCcCCC
Confidence               67899999999999999999999987 99999999999999999999988    6  899999988766 7888999


Q ss_pred             CCCHHHHHHHcChhhhhhhccccchhHHHHh-hcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 040751          256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLE-TDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD  331 (405)
Q Consensus       256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  331 (405)
                      |.||||+|+..|         +.+++++|++ .+.++ +..+ ..|.||||+|+..++.+++++|+++|+++ +.+|
T Consensus       219 g~t~L~~A~~~~---------~~~~v~~Ll~~~g~~~-~~~~-~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~-~~~d  283 (285)
T 1wdy_A          219 GKTPLILAVEKK---------HLGLVQRLLEQEHIEI-NDTD-SDGKTALLLAVELKLKKIAELLCKRGAST-DCGD  283 (285)
T ss_dssp             SCCHHHHHHHTT---------CHHHHHHHHHSSSCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSSCS-CCSS
T ss_pred             CCcHHHHHHHcC---------CHHHHHHHHhccCCCc-cccC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCC-Cccc
Confidence            999999999998         5579999998 66665 4433 48999999999999999999999999987 4443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-43  Score=322.64  Aligned_cols=309  Identities=19%  Similarity=0.210  Sum_probs=215.2

Q ss_pred             hcCCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751           28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH  107 (405)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  107 (405)
                      .....+|+.|+..|+.+.++.+++......    .-.+++.-+  ...|+.+++++++.         ...+..|.||||
T Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~g~~~~~~~~~~---------~~~~~~g~t~L~   99 (373)
T 2fo1_E           35 TSSQHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGN--DFLGDFNHTNLQIP---------TEPEPESPIKLH   99 (373)
T ss_dssp             --------------------------------------------------------------------------CCCHHH
T ss_pred             cccccccccccCCccccchhhhhhhhcccc----CccccCCCC--Cccccccccccccc---------cCCCCCCccHHH
Confidence            445667999999999999999998665331    123455556  77788888877644         246888999999


Q ss_pred             HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc-CCCchHhHHHHhCCCHHHHHHHH--------hcCCC
Q 040751          108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN-NEKNTALHEAVCHKNVDVVKILT--------KEDPD  178 (405)
Q Consensus       108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll--------~~~~~  178 (405)
                      +|+..+ .+++++|+...                    ++..+ ..|.||||+|+..|+.+++++|+        +.|++
T Consensus       100 ~Aa~~~-~~~~~~L~~~~--------------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~  158 (373)
T 2fo1_E          100 TEAAGS-YAITEPITRES--------------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD  158 (373)
T ss_dssp             HHHHSS-SCCCSCCSTTT--------------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC
T ss_pred             HHhcCC-chHHHHhcccc--------------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            999955 47888876532                    34666 78999999999999998877776        78999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh--hhhhhcccCC
Q 040751          179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE--NLIKETDQYG  256 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~--~~~~~~~~~~  256 (405)
                      ++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.  +++++|+..+.  ..++..+..|
T Consensus       159 vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          159 VN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF--GMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             Cc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCH--HHHHHHHhcCccccChhhcCCCC
Confidence            98 7899999999999999999999999999999999999999999999999999  99999998763  4478889999


Q ss_pred             CCHHHHHHHcChhhhhhhccccchhHHHHhhccccccc------ccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccc
Q 040751          257 WTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI------ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV  330 (405)
Q Consensus       257 ~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~  330 (405)
                      .||||+|+..+...      +.+++++|++.+.++...      ..+..|.||||+|+..|+.+++++|+++++..    
T Consensus       236 ~t~L~~A~~~~~~~------~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~----  305 (373)
T 2fo1_E          236 MTALMIVAHNEGRD------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN----  305 (373)
T ss_dssp             CCHHHHHHHSCSTT------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC----
T ss_pred             CCHHHHHHHhCCcc------hHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC----
Confidence            99999999886211      346899999999887431      12348999999999999999999999887433    


Q ss_pred             cCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       331 ~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                                       ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|+|||++|+..++.+
T Consensus       306 -----------------~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          306 -----------------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             -----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             -----------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHH
Confidence                             566777888999999999999999999997 9999999999999999999888754

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=298.28  Aligned_cols=262  Identities=20%  Similarity=0.230  Sum_probs=197.7

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHh-------CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhH
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEK-------CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE  134 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  134 (405)
                      .|.|+||+|  +..|+.+.+..++.....       -...+...+..|+||||+|+..|+.++|++|+++|++++     
T Consensus        14 ~~~~~lH~A--a~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-----   86 (285)
T 3d9h_A           14 LVPRGSHMA--SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-----   86 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-----
T ss_pred             HHHHHHHHH--hhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence            467777777  666665544443321100       122355678889999999999999999999999998854     


Q ss_pred             HhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 040751          135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS  214 (405)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~  214 (405)
                                   ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        87 -------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  152 (285)
T 3d9h_A           87 -------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ  152 (285)
T ss_dssp             -------------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             -------------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC
Confidence                         788899999999999999999999999999988 788899999999999999999999999999988


Q ss_pred             ccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccc
Q 040751          215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI  294 (405)
Q Consensus       215 ~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~  294 (405)
                      ..+ .|.||||+|+..++.  +++++|++.+.+ ++.++..|.||||+|+..|         +.+++++|++.+.++.  
T Consensus       153 ~~~-~g~t~L~~A~~~g~~--~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~~--  217 (285)
T 3d9h_A          153 PES-DLASPIHEAARRGHV--ECVNSLIAYGGN-IDHKISHLGTPLYLACENQ---------QRACVKKLLESGADVN--  217 (285)
T ss_dssp             CSC-TTSCHHHHHHHHTCH--HHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTT---------CHHHHHHHHHTTCCTT--
T ss_pred             CCC-CCCCHHHHHHHcCCH--HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC---------cHHHHHHHHHCCCCCC--
Confidence            654 599999999999999  999999988766 7788889999999999887         5578899999988774  


Q ss_pred             ccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHH
Q 040751          295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVM  374 (405)
Q Consensus       295 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L  374 (405)
                       .+..|.||||+|+..++.+++++|+++|++                      ++.+|..|.||||+|+  ++.+++++|
T Consensus       218 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----------------------~~~~d~~g~t~l~~A~--~~~~~~~~L  272 (285)
T 3d9h_A          218 -QGKGQDSPLHAVVRTASEELACLLMDFGAD----------------------TQAKNAEGKRPVELVP--PESPLAQLF  272 (285)
T ss_dssp             -CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC----------------------TTCCCTTSCCGGGGSC--TTSHHHHHH
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------------CCCcCCCCCCHHHHhc--CccHHHHHH
Confidence             245889999999999999999999999887                      4556667778888877  457899999


Q ss_pred             Hhcccccccc
Q 040751          375 IRNTQVNYDA  384 (405)
Q Consensus       375 l~~~g~d~~~  384 (405)
                      +++.|+++..
T Consensus       273 l~~~~a~l~~  282 (285)
T 3d9h_A          273 LEREGASLPK  282 (285)
T ss_dssp             HHHC------
T ss_pred             HHhhccCCCC
Confidence            9987887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.6e-42  Score=310.01  Aligned_cols=305  Identities=20%  Similarity=0.198  Sum_probs=244.7

Q ss_pred             cCCHHHHHHhhcCCCchhhhhHHH-HHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751           29 QMDPKFFKAAADGNVEPFKDMARE-KIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH  107 (405)
Q Consensus        29 ~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  107 (405)
                      .-.++|+.|++.|+.+.|+.++.. +.+.+..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCcHHH
Confidence            345789999999999999999975 677777888899999999  99999999999988    47788899999999999


Q ss_pred             HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCC
Q 040751          108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG  187 (405)
Q Consensus       108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  187 (405)
                      +|+..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g  157 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVN------------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHG  157 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred             HHHHCCCHHHHHHHHHCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCC
Confidence            9999999999999999998854                  788899999999999999999999999999988 778899


Q ss_pred             CcHHHHH---------------------HHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCc-cHHHHHHHHHhh
Q 040751          188 KTPLYMA---------------------AESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDL-VDTALRKLLEKK  245 (405)
Q Consensus       188 ~t~L~~a---------------------~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~-~~~~v~~Ll~~~  245 (405)
                      .||+++|                     +..+..+.++.++..+......+..+.||||+|+..++. ..+++++|+..+
T Consensus       158 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g  237 (351)
T 3utm_A          158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG  237 (351)
T ss_dssp             CCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT
T ss_pred             CcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC
Confidence            9987765                     456677777777777766666778899999999998542 128888888887


Q ss_pred             hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCc
Q 040751          246 ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPE  325 (405)
Q Consensus       246 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  325 (405)
                      .+ ++.++..|.||||+|+..|         +.+++++|++++.++ +..+ ..|+||||+|+..|+.+++++|+++|++
T Consensus       238 ~~-~~~~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~ga~~-n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          238 AN-VNEKNKDFMTPLHVAAERA---------HNDVMEVLHKHGAKM-NALD-SLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             CC-TTCCCTTCCCHHHHHHHTT---------CHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CC-cCCcCCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            66 7889999999999999998         557999999999887 4434 4899999999999999999999999987


Q ss_pred             ccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccc
Q 040751          326 CYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH  400 (405)
Q Consensus       326 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~  400 (405)
                      +                      +.+|..|.||+++|    +.+++++|.+. +   ......+.+++..|++.|
T Consensus       306 ~----------------------~~~~~~g~tal~~a----~~~~~~~l~~~-~---~~~~~~~~~~l~~A~~~g  350 (351)
T 3utm_A          306 P----------------------SIISLQGFTAAQMG----NEAVQQILSES-T---PMRTSDVDYRLLEASKAG  350 (351)
T ss_dssp             T----------------------TCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred             C----------------------CCcCCCCCChhhhh----hHHHHHHHHhc-c---ccccCcceeehhhhhccC
Confidence            4                      45566677777776    45777777765 2   234556778888887765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-42  Score=312.02  Aligned_cols=279  Identities=21%  Similarity=0.211  Sum_probs=220.7

Q ss_pred             HHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHHHH
Q 040751           33 KFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVAAK  111 (405)
Q Consensus        33 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~  111 (405)
                      ++..+...|+++.++.++...     .+..|.||||+|  +..+ .+++++|..      ..++..+ ..|+||||+|+.
T Consensus        69 ~~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~A--a~~~-~~~~~~L~~------~~~n~~d~~~g~t~Lh~Aa~  134 (373)
T 2fo1_E           69 YGNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTE--AAGS-YAITEPITR------ESVNIIDPRHNRTVLHWIAS  134 (373)
T ss_dssp             ------------------------------CCCHHHHH--HHSS-SCCCSCCST------TTTTTCCCSSCCCHHHHHHC
T ss_pred             cCCCCCccccccccccccccC-----CCCCCccHHHHH--hcCC-chHHHHhcc------ccccccCCcCCCCHHHHHHH
Confidence            356677779999998876653     355699999999  7754 577777633      3567777 789999999999


Q ss_pred             hCcHHHHHHHH--------HccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          112 FGHSGIVTFLV--------ERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       112 ~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      .|+.+++++|+        ++|+++                  +..|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus       135 ~g~~~~v~~Ll~~~~~~ll~~ga~v------------------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~  195 (373)
T 2fo1_E          135 NSSAEKSEDLIVHEAKECIAAGADV------------------NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IY  195 (373)
T ss_dssp             TTCCSCCTTHHHHHHHHHHHTCCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CC
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCC------------------cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-cc
Confidence            99988888776        778874                  4889999999999999999999999999999998 78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCcHHHHHHhcC---CccHHHHHHHHHhhhhhhhh------
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLENS---TSVSHEGPNGKTALHAAAMKF---DLVDTALRKLLEKKENLIKE------  251 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g---~~~~~~~~~~~t~L~~a~~~~---~~~~~~v~~Ll~~~~~~~~~------  251 (405)
                      +..|.||||+|+..|+.+++++|+++|   ++++..+..|.||||+|+..+   ..  +++++|++.+.+ ++.      
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~--~~v~~Ll~~g~~-~~~~~~~~~  272 (373)
T 2fo1_E          196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV--ASAKLLVEKGAK-VDYDGAARK  272 (373)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH--HHHHHHHHHTCC-SSCCSGGGT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchH--HHHHHHHHCCCC-ccccccccc
Confidence            899999999999999999999999998   899999999999999999987   67  999999998765 332      


Q ss_pred             --cccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhc-ccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccc
Q 040751          252 --TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETD-QSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYE  328 (405)
Q Consensus       252 --~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  328 (405)
                        .+..|.||||+|+..|         +.+++++|++.+ .++ +..+ ..|.||||+|+..|+.+++++|+++|++   
T Consensus       273 ~~~d~~g~t~Lh~A~~~g---------~~~~v~~Ll~~~~~~~-n~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gad---  338 (373)
T 2fo1_E          273 DSEKYKGRTALHYAAQVS---------NMPIVKYLVGEKGSNK-DKQD-EDGKTPIMLAAQEGRIEVVMYLIQQGAS---  338 (373)
T ss_dssp             SSSSCCCCCTHHHHHSSC---------CHHHHHHHHHHSCCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCC---
T ss_pred             CcccccCCCHHHHHHHhC---------CHHHHHHHHHhcCCCc-cCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence              5678999999999998         557999999887 444 4444 4899999999999999999999999987   


Q ss_pred             cccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccc
Q 040751          329 LVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVN  381 (405)
Q Consensus       329 ~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d  381 (405)
                                         ++.+|..|.||||+|+..|+.+++++|+++ |++
T Consensus       339 -------------------~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~  371 (373)
T 2fo1_E          339 -------------------VEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE  371 (373)
T ss_dssp             -------------------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred             -------------------ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence                               456677889999999999999999999997 765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.4e-41  Score=296.37  Aligned_cols=256  Identities=19%  Similarity=0.178  Sum_probs=186.1

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751           95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK  174 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  174 (405)
                      ++..|..|.||||+|+..|+.++|++|+++|++..               .++..+..|.||||+|+..|+.+++++|++
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~   66 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---------------YLDLQNDLGQTALHLAAILGEASTVEKLYA   66 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------------cccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45678889999999999999999999999887631               144678889999999999999999999999


Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------------CCCCCcHHHHHHhcCCccHHHHHHH
Q 040751          175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE-------------GPNGKTALHAAAMKFDLVDTALRKL  241 (405)
Q Consensus       175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~-------------~~~~~t~L~~a~~~~~~~~~~v~~L  241 (405)
                      +|++++ ..+..|.||||+|+..|+.+++++|+++|++....             ...+.++++.++.....  ..+..+
T Consensus        67 ~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  143 (282)
T 1oy3_D           67 AGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE--NEEEPR  143 (282)
T ss_dssp             TTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------
T ss_pred             cCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc--hhhhhh
Confidence            999987 67888999999999999999999999988764322             22345666666655544  334444


Q ss_pred             HHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHh
Q 040751          242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS  321 (405)
Q Consensus       242 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  321 (405)
                      +......++.++..|.||||+|+..|         +.+++++|++.+.++ +......|.||||+|+..|+.+++++|++
T Consensus       144 ~~~~~~~~~~~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  213 (282)
T 1oy3_D          144 DEDWRLQLEAENYDGHTPLHVAVIHK---------DAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK  213 (282)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhhcCCCcCCCCcCHHHHHHHcC---------CHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            44444457888999999999999998         557999999999887 44443469999999999999999999999


Q ss_pred             cCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccc
Q 040751          322 KNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHI  401 (405)
Q Consensus       322 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~  401 (405)
                      +|++                      ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||+++|.....
T Consensus       214 ~gad----------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          214 AGAD----------------------PTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TTCC----------------------TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC---------------
T ss_pred             cCCC----------------------CcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcccccccccCCccc
Confidence            9887                      456677899999999999999999999998 99999999999999999987654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-40  Score=292.06  Aligned_cols=254  Identities=18%  Similarity=0.137  Sum_probs=194.3

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD  178 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  178 (405)
                      ...|.|+||+|+..|+.+.+..++..+...........       ..++..+..|.||||+|+..|+.+++++|++.|++
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~   84 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS-------NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA   84 (285)
T ss_dssp             ------------------------------CCSEECCC-------CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhh-------CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            45689999999999998777777665432110000000       01346788999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751          179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT  258 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  258 (405)
                      ++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.. ++. +..|.|
T Consensus        85 ~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~-~~~g~t  159 (285)
T 3d9h_A           85 VN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW--DCVNLLLQHGAS-VQP-ESDLAS  159 (285)
T ss_dssp             SC-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-SSC-SCTTSC
T ss_pred             CC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHH--HHHHHHHHCCCC-CCC-CCCCCC
Confidence            88 7889999999999999999999999999999999999999999999999999  999999998765 333 445999


Q ss_pred             HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHH
Q 040751          259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL  338 (405)
Q Consensus       259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  338 (405)
                      |||+|+..|         +.+++++|++.+.++ +..+ ..|.||||+|+..++.+++++|++.|+++            
T Consensus       160 ~L~~A~~~g---------~~~~v~~Ll~~g~~~-~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------------  216 (285)
T 3d9h_A          160 PIHEAARRG---------HVECVNSLIAYGGNI-DHKI-SHLGTPLYLACENQQRACVKKLLESGADV------------  216 (285)
T ss_dssp             HHHHHHHHT---------CHHHHHHHHHTTCCT-TCCB-TTTBCHHHHHHHTTCHHHHHHHHHTTCCT------------
T ss_pred             HHHHHHHcC---------CHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCcHHHHHHHHHCCCCC------------
Confidence            999999998         557999999999876 3333 48999999999999999999999998875            


Q ss_pred             HHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751          339 HYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       339 ~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                                + .+..|.||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|...
T Consensus       217 ----------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          217 ----------N-QGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             ----------T-CCBTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTT
T ss_pred             ----------C-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhcCc
Confidence                      2 256788999999999999999999997 999999999999999999854

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.2e-41  Score=307.62  Aligned_cols=281  Identities=15%  Similarity=0.133  Sum_probs=236.7

Q ss_pred             HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchh
Q 040751           54 IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENE  133 (405)
Q Consensus        54 ~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  133 (405)
                      .+.+..+..|.||||+|  +..|+.+++++|++    .+.+++..+..|.||||+|+..|+.++|++|+++|++.     
T Consensus        11 ~~~~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----   79 (364)
T 3ljn_A           11 LNRIKSDDENMEKIHVA--ARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----   79 (364)
T ss_dssp             -----CCHHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred             CCccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence            44556677899999999  99999999999987    46778899999999999999999999999999999864     


Q ss_pred             HHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc----CCCCccc-----------------cCCCCCcHHH
Q 040751          134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE----DPDYRYS-----------------ANNDGKTPLY  192 (405)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~g~t~L~  192 (405)
                                     .+..|.||||+|+..|+.+++++|++.    |.+++ .                 .+..|.||||
T Consensus        80 ---------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~L~  143 (364)
T 3ljn_A           80 ---------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE-SLLNECDEREVNEIGSHVKHCKGQTALH  143 (364)
T ss_dssp             ---------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH-HHHTCCCCCCEEEETTEEEEESCCCHHH
T ss_pred             ---------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH-HHHhhcchHhhhhhccccCCCCCCCHHH
Confidence                           345799999999999999999999998    77765 3                 6778999999


Q ss_pred             HHHHcC--CHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhh----hhhcccCCCCHHHHHHHc
Q 040751          193 MAAESR--SSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL----IKETDQYGWTPIHYAAYH  266 (405)
Q Consensus       193 ~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~t~l~~a~~~  266 (405)
                      +|+..|  +.+++++|+++|++++..+..|.||||+|+..++.  +++++|++.+.+.    ++..+..|.||||+|+..
T Consensus       144 ~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~  221 (364)
T 3ljn_A          144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR--EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI  221 (364)
T ss_dssp             HHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred             HHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH--HHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence            999999  99999999999999999999999999999999999  9999999977552    678889999999999999


Q ss_pred             ChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccc--cccCCCChHHHHHHHh
Q 040751          267 GMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYE--LVDNRGWNFLHYAVVT  344 (405)
Q Consensus       267 ~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~~a~~~  344 (405)
                      |         +.+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++|+++|++...  .....+.         
T Consensus       222 g---------~~~~v~~Ll~~gad~-~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~---------  281 (364)
T 3ljn_A          222 N---------WEDVAMRFVEMGIDV-NMED-NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT---------  281 (364)
T ss_dssp             T---------CHHHHHHHHTTTCCT-TCCC-TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSS---------
T ss_pred             C---------CHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcc---------
Confidence            8         558999999999887 4444 4899999999999999999999999887511  1111222         


Q ss_pred             ccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751          345 RSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK  387 (405)
Q Consensus       345 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~  387 (405)
                         ....+..++||+++|+..|+.+.+..||.. +++...++.
T Consensus       282 ---~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~~~~~  320 (364)
T 3ljn_A          282 ---TVLPDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVRSL  320 (364)
T ss_dssp             ---SBCGGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHHHTC-
T ss_pred             ---cccccccccccchhhhhccCHHHHHHHHHH-HHHHHhhcc
Confidence               223467899999999999999989888887 666544433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=7.9e-41  Score=303.90  Aligned_cols=250  Identities=20%  Similarity=0.176  Sum_probs=220.2

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751           94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus        94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      ..+..|..|.||||+|+..|+.++|++|+++|++++                  ..+..|.||||+|+..|+.+++++|+
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll   73 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT------------------IQNRFGCTALHLACKFGCVDTAKYLA   73 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHHCCHHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------------------ccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            455678889999999999999999999999998854                  88999999999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCcc-----------------cCCCCCcHHHHHHhcC-
Q 040751          174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN----STSVSH-----------------EGPNGKTALHAAAMKF-  231 (405)
Q Consensus       174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~----g~~~~~-----------------~~~~~~t~L~~a~~~~-  231 (405)
                      +.|++++   +..|.||||+|+..|+.+++++|+++    |++++.                 .+..|.||||+|+..| 
T Consensus        74 ~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~  150 (364)
T 3ljn_A           74 SVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP  150 (364)
T ss_dssp             HHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG
T ss_pred             HCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC
Confidence            9999765   46899999999999999999999999    888777                 8889999999999999 


Q ss_pred             -CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccc-----ccccccccCCccHHH
Q 040751          232 -DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS-----ASNIADKDRKMTALH  305 (405)
Q Consensus       232 -~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~-----~~~~~~~~~g~t~l~  305 (405)
                       +.  +++++|++.+.+ ++.++..|.||||+|+..|         +.+++++|++.+.+     + +..+ ..|.||||
T Consensus       151 ~~~--~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g---------~~~~v~~Ll~~g~~~~~~~~-~~~~-~~g~t~L~  216 (364)
T 3ljn_A          151 EYL--EMIKILVQLGAS-PTAKDKADETPLMRAMEFR---------NREALDLMMDTVPSKSSLRL-DYAN-KQGNSHLH  216 (364)
T ss_dssp             GGH--HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHCSCSSSCCT-TCCC-TTCCCTTH
T ss_pred             chH--HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcC---------CHHHHHHHHhcccccccccc-cccC-CCCCcHHH
Confidence             88  999999999766 7889999999999999998         55799999999887     4 3333 48999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccccc-
Q 040751          306 LAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA-  384 (405)
Q Consensus       306 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~-  384 (405)
                      +|+..|+.+++++|+++|++                      ++.+|..|.||||+|+..|+.+++++|+++ |++++. 
T Consensus       217 ~A~~~g~~~~v~~Ll~~gad----------------------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~  273 (364)
T 3ljn_A          217 WAILINWEDVAMRFVEMGID----------------------VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQ  273 (364)
T ss_dssp             HHHTTTCHHHHHHHHTTTCC----------------------TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC----------------------CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhh
Confidence            99999999999999999987                      456677899999999999999999999998 877654 


Q ss_pred             -----------ccCCCCchhhhhhcccc
Q 040751          385 -----------VNKQNVSVEHILDYEHI  401 (405)
Q Consensus       385 -----------~~~~g~t~l~~a~~~~~  401 (405)
                                 .+..|++|+++|...+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~aa~~~~  301 (364)
T 3ljn_A          274 ACPYHNGTTVLPDRVVWLDFVPAAADPS  301 (364)
T ss_dssp             TCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred             cCcccCcccccccccccccchhhhhccC
Confidence                       56788899988887663

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-40  Score=286.13  Aligned_cols=223  Identities=22%  Similarity=0.249  Sum_probs=172.2

Q ss_pred             hhhccCCCchHhHHHHhCC-------------CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751          146 IKMTNNEKNTALHEAVCHK-------------NVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS  212 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~  212 (405)
                      ++.+|..|.||||+|+..|             +.+++++|++.|++++...+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5678999999999999977             899999999999999867789999999999999999999999999999


Q ss_pred             CcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc
Q 040751          213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS  292 (405)
Q Consensus       213 ~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~  292 (405)
                      ++..+..|.||||+|+..++.  +++++|++.+...++..+..|.||||+|+..|         +.+++++|++.+.++ 
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~-  150 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLA---------VEGMLEDLINSHADV-  150 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCH--HHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT---------CSSHHHHHHHTTCCT-
T ss_pred             CCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCCccccCCCCCcHHHHHHHcC---------hHHHHHHHHHcCCCC-
Confidence            999999999999999999999  99999999988668889999999999999988         668999999999877 


Q ss_pred             ccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHH
Q 040751          293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD  372 (405)
Q Consensus       293 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~  372 (405)
                      +..+ ..|.||||+|+..|+.+++++|+++|++                      ++.+|..|.||||+|+..|+.++++
T Consensus       151 ~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------------------~~~~~~~g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          151 NAVD-DLGKSALHWAAAVNNVDAAVVLLKNGAN----------------------KDMQNNREETPLFLAAREGSYETAK  207 (253)
T ss_dssp             TCBC-TTSCBHHHHHHHHTCHHHHHHHHHTTCC----------------------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHCCCHHHHH
Confidence            3333 4899999999999999999999999887                      4566778899999999999999999


Q ss_pred             HHHhccccccccccCCCCchhhhhhcccccCC
Q 040751          373 VMIRNTQVNYDAVNKQNVSVEHILDYEHILDF  404 (405)
Q Consensus       373 ~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~~  404 (405)
                      +|+++ |++++.+|..|+||+++|++.++.++
T Consensus       208 ~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i  238 (253)
T 1yyh_A          208 VLLDH-FANRDITDHMDRLPRDIAQERMHHDI  238 (253)
T ss_dssp             HHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHc-CCCccccccCCCCHHHHHHHcCCHHH
Confidence            99998 99999999999999999999988653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.1e-40  Score=282.47  Aligned_cols=229  Identities=22%  Similarity=0.292  Sum_probs=176.6

Q ss_pred             cccccCCCChHHHHHHHhC-------------cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH
Q 040751           95 LLQVNAKGDTPLHVAAKFG-------------HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV  161 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  161 (405)
                      ++.+|..|.||||+|+..|             +.+++++|+++|++..                 ...+..|.||||+|+
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-----------------~~~d~~g~t~L~~A~   65 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-----------------NQTDRTGETALHLAA   65 (253)
T ss_dssp             ------------------------------------------------------------------CCCTTSCCHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-----------------cccCCCCCcHHHHHH
Confidence            4455566666666666655             8999999999998752                 345889999999999


Q ss_pred             hCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCcHHHHHHhcCCccHHHHHH
Q 040751          162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST-SVSHEGPNGKTALHAAAMKFDLVDTALRK  240 (405)
Q Consensus       162 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~a~~~~~~~~~~v~~  240 (405)
                      ..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..++.  +++++
T Consensus        66 ~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~  142 (253)
T 1yyh_A           66 RYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE--GMLED  142 (253)
T ss_dssp             HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS--SHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH--HHHHH
Confidence            9999999999999999998 788999999999999999999999999997 8999999999999999999999  99999


Q ss_pred             HHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHH
Q 040751          241 LLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII  320 (405)
Q Consensus       241 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  320 (405)
                      |++.+.+ ++.++..|.||||+|+..|         +.+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|+
T Consensus       143 Ll~~g~~-~~~~d~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-~~~~-~~g~tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          143 LINSHAD-VNAVDDLGKSALHWAAAVN---------NVDAAVVLLKNGANK-DMQN-NREETPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             HHHTTCC-TTCBCTTSCBHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHcCCC-CCCcCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHCCCHHHHHHHH
Confidence            9998766 7889999999999999998         557999999999887 3333 48999999999999999999999


Q ss_pred             hcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          321 SKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       321 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                      ++|++                      ++.+|..|.|||++|++.|+.+++++|...
T Consensus       211 ~~ga~----------------------~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          211 DHFAN----------------------RDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             HTTCC----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             HcCCC----------------------ccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            99987                      456677899999999999999999999976

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=7.2e-39  Score=273.98  Aligned_cols=222  Identities=22%  Similarity=0.249  Sum_probs=197.9

Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHh----cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTK----EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                      ++.+|..|.||||+|+..|+.+++++|++    .+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            35678999999999999999999999997    688887 7889999999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCCccHHHHHHHHHhhhh---hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccccccc
Q 040751          222 TALHAAAMKFDLVDTALRKLLEKKEN---LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD  298 (405)
Q Consensus       222 t~L~~a~~~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~  298 (405)
                      ||||+|+..++.  +++++|+..+..   .++..+..|.||||+|+..|         +.+++++|++.+.+. +.....
T Consensus        81 t~l~~A~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~~~  148 (241)
T 1k1a_A           81 TAAHLACEHRSP--TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE---------CQETVQLLLERGADI-DAVDIK  148 (241)
T ss_dssp             CHHHHHHHTTCH--HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CHHHHHHHcCCH--HHHHHHHHcCCCccccccccCcCCCcHHHHHHHcC---------CHHHHHHHHHcCCCc-cccccc
Confidence            999999999999  999999998762   46778889999999999988         557999999999887 333434


Q ss_pred             CCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcc
Q 040751          299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNT  378 (405)
Q Consensus       299 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  378 (405)
                      .|.||||+|+..++.+++++|+++|++                      ++.+|..|.||||+|+..|+.+++++|+++ 
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-  205 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGAN----------------------VNAQMYSGSSALHSASGRGLLPLVRTLVRS-  205 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-
Confidence            899999999999999999999999887                      456677899999999999999999999997 


Q ss_pred             ccccccccCCCCchhhhhhcccccC
Q 040751          379 QVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       379 g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      |++++.+|..|+||+++|...+..+
T Consensus       206 ga~~~~~~~~g~tpl~~A~~~~~~~  230 (241)
T 1k1a_A          206 GADSSLKNCHNDTPLMVARSRRVID  230 (241)
T ss_dssp             TCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHhcCcHH
Confidence            9999999999999999999988765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-39  Score=284.59  Aligned_cols=240  Identities=24%  Similarity=0.282  Sum_probs=205.2

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD  178 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  178 (405)
                      +..|.||||.|+..|+.++|++|+++|+++                  +..+..|.||||+|+..|+.+++++|+++|++
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~   98 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADI------------------NYANVDGLTALHQACIDDNVDMVKFLVENGAN   98 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            446789999999999999999999999885                  47889999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751          179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT  258 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  258 (405)
                      ++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+..  ++++.++...+..++.....+.+
T Consensus        99 ~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~  175 (299)
T 1s70_B           99 IN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME--ELLQNEVNRQGVDIEAARKEEER  175 (299)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH--HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchH--HHHHHHHhhcCCCchhhhhhhhh
Confidence            98 7888999999999999999999999999999999999999999999999988  99999888765544433322222


Q ss_pred             HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHH
Q 040751          259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL  338 (405)
Q Consensus       259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  338 (405)
                      +++                 ..+..++..+... ....+..|.||||+|+..|+.+++++|+++|++             
T Consensus       176 ~~~-----------------~~~~~~l~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-------------  224 (299)
T 1s70_B          176 IML-----------------RDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-------------  224 (299)
T ss_dssp             HHH-----------------HHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-------------
T ss_pred             HHH-----------------HHHHHHHhccCcc-hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-------------
Confidence            222                 1334445555444 223335899999999999999999999999876             


Q ss_pred             HHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccc
Q 040751          339 HYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH  400 (405)
Q Consensus       339 ~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~  400 (405)
                               ++.+|..|.||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|.+..
T Consensus       225 ---------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          225 ---------VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             ---------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSGG
T ss_pred             ---------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHHH
Confidence                     456677899999999999999999999998 9999999999999999998743

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8.3e-39  Score=272.86  Aligned_cols=220  Identities=25%  Similarity=0.376  Sum_probs=201.9

Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH  225 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~  225 (405)
                      ++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            45788899999999999999999999999999988 77889999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHH
Q 040751          226 AAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH  305 (405)
Q Consensus       226 ~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~  305 (405)
                      .|+..++.  +++++|++.+...++..+..|.||||+|+..+         +.+++++|++.+.++ +... ..|.||||
T Consensus        83 ~A~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~  149 (237)
T 3b7b_A           83 LAAKKGHY--EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK---------HVDLVKLLLSKGSDI-NIRD-NEENICLH  149 (237)
T ss_dssp             HHHHTTCH--HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHTTCCT-TCCC-TTSCCHHH
T ss_pred             HHHHcCCH--HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-CccC-CCCCCHHH
Confidence            99999999  99999999886668888999999999999988         557999999998876 3333 48999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccc
Q 040751          306 LAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV  385 (405)
Q Consensus       306 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~  385 (405)
                      +|+..|+.+++++|+++|++                      ++.+|..|.||||+|++.|+.+++++|+++ |++++.+
T Consensus       150 ~A~~~~~~~~~~~Ll~~g~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~  206 (237)
T 3b7b_A          150 WAAFSGCVDIAEILLAAKCD----------------------LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLK  206 (237)
T ss_dssp             HHHHHCCHHHHHHHHTTTCC----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC
T ss_pred             HHHHCCCHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCcc
Confidence            99999999999999999877                      455677889999999999999999999998 9999999


Q ss_pred             cCCCCchhhhhhccccc
Q 040751          386 NKQNVSVEHILDYEHIL  402 (405)
Q Consensus       386 ~~~g~t~l~~a~~~~~~  402 (405)
                      |..|+||+++|+..+..
T Consensus       207 d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          207 NKEGETPLQCASLNSQV  223 (237)
T ss_dssp             CTTSCCHHHHSCTTCHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999988754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.3e-38  Score=269.14  Aligned_cols=228  Identities=23%  Similarity=0.275  Sum_probs=196.9

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751           94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus        94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      +++..+..|.||||+|+..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll   64 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID------------------TCSEDQRTPLMEAAENNHLEAVKYLI   64 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC------------------ccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            456778899999999999999999999999998854                  77888999999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhc
Q 040751          174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS-TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKET  252 (405)
Q Consensus       174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~  252 (405)
                      ++|++++ ..+..|.||||+|+..|+.+++++|+++| .+++..+..|.||||.|+..++.  +++++|++.+.+ ++.+
T Consensus        65 ~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~-~~~~  140 (237)
T 3b7b_A           65 KAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV--DLVKLLLSKGSD-INIR  140 (237)
T ss_dssp             TTTCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCC
T ss_pred             hCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCC-CCcc
Confidence            9999987 67889999999999999999999999998 88899999999999999999999  999999998766 6788


Q ss_pred             ccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccC
Q 040751          253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN  332 (405)
Q Consensus       253 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~  332 (405)
                      +..|.||||+|+..|         +.+++++|++.+.++ +..+ ..|.||||+|+..++.+++++|+++|++.      
T Consensus       141 ~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~gad~------  203 (237)
T 3b7b_A          141 DNEENICLHWAAFSG---------CVDIAEILLAAKCDL-HAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDV------  203 (237)
T ss_dssp             CTTSCCHHHHHHHHC---------CHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCT------
T ss_pred             CCCCCCHHHHHHHCC---------CHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHhCCHhHHHHHHHcCCCC------
Confidence            889999999999988         557899999998876 3333 48999999999999999999999999874      


Q ss_pred             CCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHh
Q 040751          333 RGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIR  376 (405)
Q Consensus       333 ~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~  376 (405)
                                      +.+|..|.||||+|+..|+...+..|++
T Consensus       204 ----------------~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          204 ----------------TLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             ----------------TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             ----------------CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                            4556677777778878777755555554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5.9e-39  Score=274.50  Aligned_cols=232  Identities=21%  Similarity=0.262  Sum_probs=201.0

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES  137 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  137 (405)
                      ..|.+|.||||+|  +..|+.+++++|++.+...+..++..+..|.||||+|+..|+.+++++|+++|++++        
T Consensus         4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------   73 (241)
T 1k1a_A            4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM--------   73 (241)
T ss_dssp             ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence            5677899999999  999999999999988777888899999999999999999999999999999998854        


Q ss_pred             hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC----CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751          138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP----DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV  213 (405)
Q Consensus       138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~  213 (405)
                                ..+..|.||||+|+..|+.+++++|++.+.    +++ ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        74 ----------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  142 (241)
T 1k1a_A           74 ----------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADI  142 (241)
T ss_dssp             ----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             ----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence                      778899999999999999999999999987    555 67889999999999999999999999999999


Q ss_pred             cccC-CCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc
Q 040751          214 SHEG-PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS  292 (405)
Q Consensus       214 ~~~~-~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~  292 (405)
                      +..+ ..|.||||+|+..++.  +++++|++.+.+ ++.++..|.||||+|+..|         +.+++++|+++|.++ 
T Consensus       143 ~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-  209 (241)
T 1k1a_A          143 DAVDIKSGRSPLIHAVENNSL--SMVQLLLQHGAN-VNAQMYSGSSALHSASGRG---------LLPLVRTLVRSGADS-  209 (241)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHT---------CHHHHHHHHHTTCCT-
T ss_pred             ccccccCCCcHHHHHHHcCCH--HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC---------CHHHHHHHHhcCCCC-
Confidence            9888 7899999999999999  999999998766 7888899999999999988         557899999998876 


Q ss_pred             ccccccCCccHHHHHHhcCCHHHHHHHHhcCC
Q 040751          293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNP  324 (405)
Q Consensus       293 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  324 (405)
                      +..+ ..|.||+|+|+..++.++++.|.++++
T Consensus       210 ~~~~-~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          210 SLKN-CHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             TCCC-TTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CCcC-CCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            3333 489999999999999999999987654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.3e-38  Score=267.37  Aligned_cols=229  Identities=26%  Similarity=0.261  Sum_probs=199.9

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD  178 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  178 (405)
                      +..+.+|||.|+..|+.+.+++|++.+...                 ++..+..|.||||+|+..|+.+++++|++.|++
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   65 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSL-----------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP   65 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG-----------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhh-----------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC
Confidence            345789999999999999999999987543                 456788999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751          179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT  258 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t  258 (405)
                      ++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++.  +++++|++.+.+ ++.++..|.|
T Consensus        66 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~-~~~~~~~g~t  141 (231)
T 3aji_A           66 VN-DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH--EIAVMLLEGGAN-PDAKDHYDAT  141 (231)
T ss_dssp             SC-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             CC-CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CCCcCCCCCc
Confidence            88 7888999999999999999999999999999999999999999999999999  999999988766 6778888999


Q ss_pred             HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHH
Q 040751          259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL  338 (405)
Q Consensus       259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  338 (405)
                      |||+|+..|         +.+++++|++.+.++ +..+ ..|.||||+|+..++.+++++|+++|++             
T Consensus       142 ~L~~A~~~~---------~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------------  197 (231)
T 3aji_A          142 AMHRAAAKG---------NLKMVHILLFYKAST-NIQD-TEGNTPLHLACDEERVEEAKFLVTQGAS-------------  197 (231)
T ss_dssp             HHHHHHHHT---------CHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred             HHHHHHHcC---------CHHHHHHHHhcCCCc-cccC-CCCCCHHHHHHHCCCHHHHHHHHHCCCC-------------
Confidence            999999887         557888999888776 3333 4888999999999999999999998876             


Q ss_pred             HHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccc
Q 040751          339 HYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNY  382 (405)
Q Consensus       339 ~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~  382 (405)
                               ++.+|..|.|||++|++.++.+++++|+++ |+++
T Consensus       198 ---------~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~-~a~i  231 (231)
T 3aji_A          198 ---------IYIENKEEKTPLQVAKGGLGLILKRLAEGE-EASM  231 (231)
T ss_dssp             ---------SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH-HHCC
T ss_pred             ---------CCCCCCCCCCHHHHHHhhHHHHHHHHHccc-cccC
Confidence                     455667788888898888899999998886 7653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=265.79  Aligned_cols=235  Identities=22%  Similarity=0.270  Sum_probs=203.6

Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751           96 LQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus        96 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      +..|..|.|||+.|+..|+.+++++|+++|.++                  +..+..|.||||+|+..|+.+++++|++.
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   64 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV------------------RQPDKENVTLLHWAAINNRIDLVKYYISK   64 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCc------------------CCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            456778899999999999999999999999874                  37788899999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccC
Q 040751          176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQY  255 (405)
Q Consensus       176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~  255 (405)
                      |.+++...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.  +++++|++.+.. ++..+..
T Consensus        65 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~~~~Ll~~~~~-~~~~~~~  141 (240)
T 3eu9_A           65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT--SIVAYLIAKGQD-VDMMDQN  141 (240)
T ss_dssp             TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTT
T ss_pred             CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHH--HHHHHHHhcCCC-ccccCCC
Confidence            9998866667799999999999999999999999999999999999999999999999  999999998765 6788889


Q ss_pred             CCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 040751          256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW  335 (405)
Q Consensus       256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  335 (405)
                      |.||||+|+..+.        ..+++++|++.+.+. +......|.||||+|+..++.+++++|+++|++          
T Consensus       142 g~t~l~~a~~~~~--------~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------  202 (240)
T 3eu9_A          142 GMTPLMWAAYRTH--------SVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN----------  202 (240)
T ss_dssp             SCCHHHHHHHHCC--------SSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC----------
T ss_pred             CCcHHHHHHHhCC--------hHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            9999999997762        357889999999887 333434889999999999999999999999877          


Q ss_pred             hHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccc
Q 040751          336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD  383 (405)
Q Consensus       336 t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~  383 (405)
                                  ++.++..|.|||++|++.|+.+++++|++. |++..
T Consensus       203 ------------~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~-~~~~~  237 (240)
T 3eu9_A          203 ------------VDAQNIKGESALDLAKQRKNVWMINHLQEA-RQAKG  237 (240)
T ss_dssp             ------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH-C----
T ss_pred             ------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHh-hhccC
Confidence                        456677889999999999999999999997 76654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-37  Score=264.49  Aligned_cols=217  Identities=21%  Similarity=0.298  Sum_probs=192.2

Q ss_pred             CchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcc-cCCCCCcHHHHHHh
Q 040751          153 KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS--TSVSH-EGPNGKTALHAAAM  229 (405)
Q Consensus       153 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g--~~~~~-~~~~~~t~L~~a~~  229 (405)
                      |.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||.|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999999887668999999999999999999999999999  55555 77899999999999


Q ss_pred             cCCccHHHHHHHHHhh-hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHH
Q 040751          230 KFDLVDTALRKLLEKK-ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA  308 (405)
Q Consensus       230 ~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~  308 (405)
                      .++.  +++++|++.+ ...++..+..|.||||+|+..+         +.+++++|++++.++ +..+ ..|.||||+|+
T Consensus        82 ~~~~--~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~  148 (228)
T 2dzn_A           82 VGNL--EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---------WFEVSQFLIENGASV-RIKD-KFNQIPLHRAA  148 (228)
T ss_dssp             HCCH--HHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTT---------CHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHH
T ss_pred             cCCH--HHHHHHHhCCCCcccccCCcCCCCHHHHHHHcC---------CHhHHHHHHHcCCCc-cccC-CCCCCHHHHHH
Confidence            9999  9999999986 2347888899999999999988         557999999998876 3333 48999999999


Q ss_pred             hcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCC
Q 040751          309 GQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQ  388 (405)
Q Consensus       309 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~  388 (405)
                      ..|+.+++++|++.|+..                     ++.+|..|+||||+|+..|+.+++++|++..|+|++.+|..
T Consensus       149 ~~~~~~~v~~Ll~~g~~~---------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~  207 (228)
T 2dzn_A          149 SVGSLKLIELLCGLGKSA---------------------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK  207 (228)
T ss_dssp             HTTCHHHHHHHHTTTCCC---------------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTT
T ss_pred             HcCCHHHHHHHHhcCccc---------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC
Confidence            999999999999998433                     56677889999999999999999999994449999999999


Q ss_pred             CCchhhhhhcccccC
Q 040751          389 NVSVEHILDYEHILD  403 (405)
Q Consensus       389 g~t~l~~a~~~~~~~  403 (405)
                      |+||+++|.+.+..+
T Consensus       208 g~t~l~~A~~~~~~~  222 (228)
T 2dzn_A          208 GAKAEDVALNEQVKK  222 (228)
T ss_dssp             SCBGGGGCSSTTHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999999999876543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.5e-39  Score=276.39  Aligned_cols=224  Identities=19%  Similarity=0.240  Sum_probs=164.0

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCH-HHHHHHHhc
Q 040751           97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNV-DVVKILTKE  175 (405)
Q Consensus        97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~  175 (405)
                      .+|..+.+||+.|+..|+.++|++|+++++.+...          ....++..+..|.|||+.|+..+.. .++++|++.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~----------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~   75 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED----------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS   75 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------C
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc----------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC
Confidence            45677889999999999999999999998764311          1122456778899999999987765 488999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccC
Q 040751          176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQY  255 (405)
Q Consensus       176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~  255 (405)
                      |++++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||++.|+..+..  ++++.|++.+.+ ++.++..
T Consensus        76 Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~-~n~~d~~  151 (269)
T 4b93_B           76 GLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF--QVVKCLLDSNAK-PNKKDLS  151 (269)
T ss_dssp             CCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-SCCCCTT
T ss_pred             CCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChH--HHHHHHHHCCCC-CCCCCCC
Confidence            99998 7899999999999999999999999999999999999999999999999999  999999998766 7888999


Q ss_pred             CCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 040751          256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW  335 (405)
Q Consensus       256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  335 (405)
                      |.||||+|+..|         +.+++++|++.|+++ +... ..|.||||+|+..|+.+++++|+++|+++         
T Consensus       152 g~TpL~~A~~~g---------~~~~v~~Ll~~gadv-n~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~---------  211 (269)
T 4b93_B          152 GNTPLIYACSGG---------HHELVALLLQHGASI-NASN-NKGNTALHEAVIEKHVFVVELLLLHGASV---------  211 (269)
T ss_dssp             CCCHHHHHHHTT---------CGGGHHHHHHTTCCT-TCBC-TTSCBHHHHHHHTTCHHHHHHHHHTTCCS---------
T ss_pred             CCCHHHHHHHCC---------CHHHHHHHHHCCCCC-Cccc-cCCCcHHHHHHHcCCHHHHHHHHHCCCCC---------
Confidence            999999999998         568999999999887 4433 48999999999999999999999999874         


Q ss_pred             hHHHHHHHhccccccccCCCCCHHHHHHHhCC
Q 040751          336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRR  367 (405)
Q Consensus       336 t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~  367 (405)
                                   +.+|..|+||||+|+++++
T Consensus       212 -------------~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          212 -------------QVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             -------------CCCCTTSCCSGGGSCTTCH
T ss_pred             -------------CCcCCCCCCHHHHHHhCCc
Confidence                         4556667777777766554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.5e-37  Score=263.97  Aligned_cols=225  Identities=23%  Similarity=0.237  Sum_probs=149.4

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      +.+|||.|  +..|+.+.++++++   ..+..++..+..|.||||+|+..|+.+++++|+++|++++             
T Consensus         6 ~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------   67 (231)
T 3aji_A            6 SNIMICNL--AYSGKLDELKERIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-------------   67 (231)
T ss_dssp             SSSHHHHH--HHHTCHHHHHHHHH---HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-------------
T ss_pred             ccchHHHH--HHhCCHHHHHHHHH---hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-------------
Confidence            55666766  66666666666644   2344455566667777777777777777777777766543             


Q ss_pred             HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751          143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT  222 (405)
Q Consensus       143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  222 (405)
                           ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++..+..|.|
T Consensus        68 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  141 (231)
T 3aji_A           68 -----DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT  141 (231)
T ss_dssp             -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             -----CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence                 556666777777777777777777777776665 55666677777777777777777777777777766666777


Q ss_pred             HHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCcc
Q 040751          223 ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMT  302 (405)
Q Consensus       223 ~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t  302 (405)
                      |||.|+..++.  +++++|+..+.+ ++.++..|.||||+|+..+         +.+++++|+++|.++ +..+ ..|.|
T Consensus       142 ~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-~~~~-~~g~t  207 (231)
T 3aji_A          142 AMHRAAAKGNL--KMVHILLFYKAS-TNIQDTEGNTPLHLACDEE---------RVEEAKFLVTQGASI-YIEN-KEEKT  207 (231)
T ss_dssp             HHHHHHHHTCH--HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTT---------CHHHHHHHHHTTCCS-CCCC-TTSCC
T ss_pred             HHHHHHHcCCH--HHHHHHHhcCCC-ccccCCCCCCHHHHHHHCC---------CHHHHHHHHHCCCCC-CCCC-CCCCC
Confidence            77777777766  777777665544 5566666777777777666         445666777776655 2222 36777


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCc
Q 040751          303 ALHLAAGQGNAEIVDAIISKNPE  325 (405)
Q Consensus       303 ~l~~A~~~~~~~~v~~Ll~~~~~  325 (405)
                      |+++|+..++.+++++|.++|++
T Consensus       208 ~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          208 PLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhHHHHHHHHHcccccc
Confidence            77777777777777777766543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-38  Score=283.76  Aligned_cols=277  Identities=12%  Similarity=0.095  Sum_probs=197.7

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      ..+|+|..      ..+++++|++    .+..++..+..|.|+++     |+.++|++|+++|.+++.....  ......
T Consensus        23 ~~~~~~~~------~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~--~a~~~~   85 (327)
T 1sw6_A           23 TAGPIITF------THDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMP--TSLNND   85 (327)
T ss_dssp             --CCEEEC------CTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------
T ss_pred             cccchhhh------cCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccch--Hhhhcc
Confidence            55666644      3355666655    57777888888888876     8888888888888765421000  000000


Q ss_pred             HH-HhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          143 RQ-MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       143 ~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                      .. --........+.+|.|+..+..+++++|++.|++++...+..|.||||+|+..|+.++|++|+++|++++.++..|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~  165 (327)
T 1sw6_A           86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE  165 (327)
T ss_dssp             ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred             cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            00 00001111233458888888889999999999999843899999999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCC---ccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH----cChhhhhhhccccchhHHHHhhc------
Q 040751          222 TALHAAAMKFD---LVDTALRKLLEKKENLIKETDQYGWTPIHYAAY----HGMYWINRFYGNYGTVNLLLETD------  288 (405)
Q Consensus       222 t~L~~a~~~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~l~~~~~~~~Ll~~~------  288 (405)
                      ||||+|+..++   .  +.++.|++.....++.++..|+||||+|+.    .|         +.+++++|++.+      
T Consensus       166 TpLh~A~~~g~~~~~--~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g---------~~~~v~~Ll~~~~~~~~~  234 (327)
T 1sw6_A          166 SCLVKAVKSVNNYDS--GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG---------CSAAAKYYLDILMGWIVK  234 (327)
T ss_dssp             CHHHHHHHSSHHHHT--TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT---------CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcccccH--HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc---------cHHHHHHHHHHHHHHHhc
Confidence            99999999987   6  788888888766689999999999999998    55         446777777663      


Q ss_pred             --------------ccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCC
Q 040751          289 --------------QSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAM  354 (405)
Q Consensus       289 --------------~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~  354 (405)
                                    .++ +. .+..|.||||.|+.      +++|++++                        ++.+|..
T Consensus       235 ~~~~~i~~~~~~~g~~~-~~-~~~~g~t~L~~a~~------~~~Ll~~~------------------------~n~~d~~  282 (327)
T 1sw6_A          235 KQNRPIQSGTNEKESKP-ND-KNGERKDSILENLD------LKWIIANM------------------------LNAQDSN  282 (327)
T ss_dssp             GGGCCEEEC------------------CHHHHHCS------HHHHHHHT------------------------TTCCCTT
T ss_pred             ccchHHHhhhhcccCCc-cc-ccccCCChhHHHHH------HHHHHHhC------------------------CCCCCCC
Confidence                          222 22 22367777777764      66666652                        6777889


Q ss_pred             CCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccc
Q 040751          355 GNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH  400 (405)
Q Consensus       355 g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~  400 (405)
                      |+||||+|++.|+.++|++||++ |+|++.+|..|+||||+|++.+
T Consensus       283 G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          283 GDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999999998 9999999999999999999864

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=269.58  Aligned_cols=217  Identities=19%  Similarity=0.260  Sum_probs=168.2

Q ss_pred             hccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc-------cccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcccCCC
Q 040751          148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR-------YSANNDGKTPLYMAAESRSS-DMVLALLENSTSVSHEGPN  219 (405)
Q Consensus       148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~  219 (405)
                      .+|..+.++|+.|+..|+.+++++|++.|....       ...+..+.|||++|+..+.. .+++.|++.|++++..|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            456678899999999999999999999987532       24566889999999988775 4889999999999999999


Q ss_pred             CCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccC
Q 040751          220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDR  299 (405)
Q Consensus       220 ~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~  299 (405)
                      |.||||+|+..|+.  +++++|+..+.+ ++.++..|.||++.|+..+         +.+++++|++.+.++ +..+ ..
T Consensus        86 G~TpLh~A~~~g~~--~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~-n~~d-~~  151 (269)
T 4b93_B           86 GSSPLHVAALHGRA--DLIPLLLKHGAN-AGARNADQAVPLHLACQQG---------HFQVVKCLLDSNAKP-NKKD-LS  151 (269)
T ss_dssp             SCCHHHHHHHTTCT--THHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT---------CHHHHHHHHHTTCCS-CCCC-TT
T ss_pred             CCCHHHHHHHcCcH--HHHHHHHhcCCC-cCccCCCCCCccccccccC---------hHHHHHHHHHCCCCC-CCCC-CC
Confidence            99999999999999  999999998776 7888999999999999988         557999999999887 4333 48


Q ss_pred             CccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccc
Q 040751          300 KMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQ  379 (405)
Q Consensus       300 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g  379 (405)
                      |.||||+|+..|+.+++++|+++|++                      +|.++..|.||||+|+..|+.++|++||++ |
T Consensus       152 g~TpL~~A~~~g~~~~v~~Ll~~gad----------------------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-G  208 (269)
T 4b93_B          152 GNTPLIYACSGGHHELVALLLQHGAS----------------------INASNNKGNTALHEAVIEKHVFVVELLLLH-G  208 (269)
T ss_dssp             CCCHHHHHHHTTCGGGHHHHHHTTCC----------------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-T
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCC----------------------CCccccCCCcHHHHHHHcCCHHHHHHHHHC-C
Confidence            99999999999999999999999887                      456677899999999999999999999997 9


Q ss_pred             cccccccCCCCchhhhhhcccc
Q 040751          380 VNYDAVNKQNVSVEHILDYEHI  401 (405)
Q Consensus       380 ~d~~~~~~~g~t~l~~a~~~~~  401 (405)
                      +|++.+|..|+||||+|++++.
T Consensus       209 ad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          209 ASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             CCSCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.8e-37  Score=269.63  Aligned_cols=252  Identities=17%  Similarity=0.164  Sum_probs=185.6

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES  137 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  137 (405)
                      ..+.+|+||||+|  +..|+.+++++|++. ......++..+..|.||||+|+..|+.++|++|+++|++++        
T Consensus         4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--------   72 (282)
T 1oy3_D            4 YVTEDGDTALHLA--VIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL--------   72 (282)
T ss_dssp             CCCTTCCCHHHHH--HHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--------
T ss_pred             ccCCCCCcHHHHH--HHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--------
Confidence            4567799999999  999999999999873 23333478889999999999999999999999999999854        


Q ss_pred             hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc------------ccCCCCCcHHHHHHHcCC-HHHHH
Q 040751          138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY------------SANNDGKTPLYMAAESRS-SDMVL  204 (405)
Q Consensus       138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~------------~~~~~g~t~L~~a~~~~~-~~~v~  204 (405)
                                ..+..|.||||+|+..|+.+++++|+++++....            .....+.++++.+...+. .....
T Consensus        73 ----------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (282)
T 1oy3_D           73 ----------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP  142 (282)
T ss_dssp             ----------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred             ----------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhh
Confidence                      7888999999999999999999999998876431            112245566666665543 34445


Q ss_pred             HHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc-CCCCHHHHHHHcChhhhhhhccccchhHH
Q 040751          205 ALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ-YGWTPIHYAAYHGMYWINRFYGNYGTVNL  283 (405)
Q Consensus       205 ~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~  283 (405)
                      .+...+.+++..+..|.||||+|+..++.  +++++|++.+.+ ++..+. .|.||||+|+..|         +.+++++
T Consensus       143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~---------~~~~v~~  210 (282)
T 1oy3_D          143 RDEDWRLQLEAENYDGHTPLHVAVIHKDA--EMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQ---------AASVLEL  210 (282)
T ss_dssp             -CCCGGGGTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTT---------CHHHHHH
T ss_pred             hhhhhhhcCCCcCCCCcCHHHHHHHcCCH--HHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcC---------CHHHHHH
Confidence            55567788899999999999999999999  999999998876 566664 5999999999988         5579999


Q ss_pred             HHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhc
Q 040751          284 LLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTR  345 (405)
Q Consensus       284 Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  345 (405)
                      |+++|.++ +..+ ..|.||||+|+..++.+++++|+++|+++ +.++..|.||+++|....
T Consensus       211 Ll~~gad~-~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          211 LLKAGADP-TARM-YGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHTTCCT-TCCC-TTSCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC--------------
T ss_pred             HHHcCCCC-cccc-cCCCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCcccccccccCCcc
Confidence            99999887 4433 48999999999999999999999999997 778888888888886543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.6e-37  Score=269.48  Aligned_cols=227  Identities=20%  Similarity=0.250  Sum_probs=196.9

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751           94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus        94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      .++..|..|.||||+|+..|+.++|++|+++|++++                  ..  +|.||||+|+..|+.+++++|+
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~--~g~t~L~~A~~~g~~~~v~~Ll   82 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN------------------LL--ENEFPLHQAATLEDTKIVKILL   82 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS------------------CC--TTCCHHHHHTTSSSCHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------------------CC--CCCCHHHHHHHcCCHHHHHHHH
Confidence            478889999999999999999999999999998753                  33  5899999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CcHHHHHHhcCCccHHHHHHHHHhhhhhhhhc
Q 040751          174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG-KTALHAAAMKFDLVDTALRKLLEKKENLIKET  252 (405)
Q Consensus       174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~  252 (405)
                      ++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..++.  +++++|++.+...   .
T Consensus        83 ~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~--~~v~~Ll~~g~~~---~  156 (285)
T 3kea_A           83 FSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV--SIVSYFLSEIPST---F  156 (285)
T ss_dssp             HTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCH--HHHHHHHTTSCTT---C
T ss_pred             HCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCcc---c
Confidence            9999988 688899999999999999999999999999999999999 7999999999999  9999999987653   2


Q ss_pred             cc-CCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH-HHHHHhcCCHHHHHHHHhcCCcccccc
Q 040751          253 DQ-YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA-LHLAAGQGNAEIVDAIISKNPECYELV  330 (405)
Q Consensus       253 ~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~  330 (405)
                      +. .|.||||+|+..|         +.+++++|+++|.++ +..+ ..|.|| ||+|+..++.+++++|+++|+++ +..
T Consensus       157 ~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~gad~-n~~~-~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~~  224 (285)
T 3kea_A          157 DLAILLSCIHITIKNG---------HVDMMILLLDYMTST-NTNN-SLLFIPDIKLAIDNKDIEMLQALFKYDINI-YSA  224 (285)
T ss_dssp             CCSTHHHHHHHHHHTT---------CHHHHHHHHHHHHHT-CTTC-CCBCCTTHHHHHHHTCHHHHHHHTTSCBCS-TTT
T ss_pred             cccCCccHHHHHHHcC---------hHHHHHHHHHcCCCC-Cccc-CCCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence            32 7899999999998         557999999999887 4333 378887 99999999999999999999886 322


Q ss_pred             cCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751          331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK  387 (405)
Q Consensus       331 ~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~  387 (405)
                                           +       +.|+..|+.+++++|+++ |+++...+.
T Consensus       225 ---------------------~-------~~a~~~~~~~iv~~Ll~~-g~~~~~~~~  252 (285)
T 3kea_A          225 ---------------------N-------LENVLLDDAEIAKMIIEK-HVEYKSDSY  252 (285)
T ss_dssp             ---------------------T-------GGGGTTTCHHHHHHHHHH-HHHHTTCTT
T ss_pred             ---------------------C-------hhhhhcCCHHHHHHHHHc-CCCCCCccc
Confidence                                 2       245678899999999998 998775543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8e-37  Score=258.95  Aligned_cols=214  Identities=21%  Similarity=0.187  Sum_probs=191.4

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc-ccCCCChHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQ-VNAKGDTPLHV  108 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~t~L~~  108 (405)
                      .+|||.|++.|+.++|++|++.+.+.. ..+..|.||||+|  +..|+.+++++|++.  .....+.. .+..|.||||+
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLSK--MENVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT--CTTCCGGGCCCTTSCCHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhc--cccccccccCCCCCCCHHHH
Confidence            458999999999999999999998776 4788899999999  999999999999872  11144455 78899999999


Q ss_pred             HHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCC
Q 040751          109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK  188 (405)
Q Consensus       109 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  188 (405)
                      |+..|+.+++++|+++|...+                ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~  141 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPD----------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQ  141 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSC
T ss_pred             HHHcCCHHHHHHHHhCCCCcc----------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCC
Confidence            999999999999999994333                45788899999999999999999999999999988 7889999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751          189 TPLYMAAESRSSDMVLALLENS-TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG  267 (405)
Q Consensus       189 t~L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  267 (405)
                      ||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++.  +++++|++..+.+++.++..|.||+++|+..+
T Consensus       142 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~--~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG--DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCH--HHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            9999999999999999999999 99999999999999999999999  99999995444558899999999999997654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=252.17  Aligned_cols=231  Identities=20%  Similarity=0.196  Sum_probs=200.5

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES  137 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  137 (405)
                      ..+..|.+||++|  +..|+.+++++|++    .+..++..+..|.||||+|+..|+.+++++|+++|++..        
T Consensus         4 ~~d~~~~~~l~~A--~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--------   69 (240)
T 3eu9_A            4 HIDDYSTWDIVKA--TQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD--------   69 (240)
T ss_dssp             CCSCGGGCCHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred             ccccccchHHHHH--HHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch--------
Confidence            3466799999999  99999999999987    467788889999999999999999999999999998753        


Q ss_pred             hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 040751          138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG  217 (405)
Q Consensus       138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~  217 (405)
                               ...+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus        70 ---------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~  139 (240)
T 3eu9_A           70 ---------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD  139 (240)
T ss_dssp             ---------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ---------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC
Confidence                     2344568999999999999999999999999987 678899999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHhcCC-ccHHHHHHHHHhhhhhhhhccc-CCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccc
Q 040751          218 PNGKTALHAAAMKFD-LVDTALRKLLEKKENLIKETDQ-YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIA  295 (405)
Q Consensus       218 ~~~~t~L~~a~~~~~-~~~~~v~~Ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~  295 (405)
                      ..|.||||.|+..+. .  +++++|+..+.+ ++..+. .|.||||+|+..|         +.+++++|++++.++ +..
T Consensus       140 ~~g~t~l~~a~~~~~~~--~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~-~~~  206 (240)
T 3eu9_A          140 QNGMTPLMWAAYRTHSV--DPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAG---------NTTVISLLLEAGANV-DAQ  206 (240)
T ss_dssp             TTSCCHHHHHHHHCCSS--TTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHT---------CHHHHHHHHHHTCCT-TCB
T ss_pred             CCCCcHHHHHHHhCChH--HHHHHHHhcCCC-cchhhccCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC-CCc
Confidence            999999999997766 5  777888777765 566665 8999999999998         557999999999877 333


Q ss_pred             cccCCccHHHHHHhcCCHHHHHHHHhcCCcc
Q 040751          296 DKDRKMTALHLAAGQGNAEIVDAIISKNPEC  326 (405)
Q Consensus       296 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  326 (405)
                      . ..|.||+++|+..++.+++++|++.+++.
T Consensus       207 ~-~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          207 N-IKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             C-TTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             C-CCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            3 48999999999999999999999988764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-36  Score=266.39  Aligned_cols=240  Identities=19%  Similarity=0.158  Sum_probs=208.5

Q ss_pred             HhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHH
Q 040751           37 AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSG  116 (405)
Q Consensus        37 A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  116 (405)
                      +++..+.+.|..++..+ +.+..+..|.||||+|  +..|+.+++++|++    .+..++..  +|.||||+|+..|+.+
T Consensus         6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~--~g~t~L~~A~~~g~~~   76 (285)
T 3kea_A            6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYA--IADNNVRLVCTLLN----AGALKNLL--ENEFPLHQAATLEDTK   76 (285)
T ss_dssp             TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTGGGSCC--TTCCHHHHHTTSSSCH
T ss_pred             HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCC--CCCCHHHHHHHcCCHH
Confidence            35566767777777655 4668888899999999  99999999999988    35556655  4999999999999999


Q ss_pred             HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCC-CcHHHHHH
Q 040751          117 IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG-KTPLYMAA  195 (405)
Q Consensus       117 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~a~  195 (405)
                      ++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+
T Consensus        77 ~v~~Ll~~ga~~~------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~  137 (285)
T 3kea_A           77 IVKILLFSGLDDS------------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAV  137 (285)
T ss_dssp             HHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHH
T ss_pred             HHHHHHHCCCCCC------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHH
Confidence            9999999999854                  788899999999999999999999999999988 778888 79999999


Q ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCH-HHHHHHcChhhhhhh
Q 040751          196 ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTP-IHYAAYHGMYWINRF  274 (405)
Q Consensus       196 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~  274 (405)
                      ..|+.+++++|+++|++.... ..|.||||+|+..++.  +++++|++.+.+ ++.++..|.|| ||+|+..|       
T Consensus       138 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~--~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~-------  206 (285)
T 3kea_A          138 MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV--DMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNK-------  206 (285)
T ss_dssp             HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH--HHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHT-------
T ss_pred             HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH--HHHHHHHHcCCC-CCcccCCCCChHHHHHHHcC-------
Confidence            999999999999999877332 2799999999999999  999999998766 78899999998 99999998       


Q ss_pred             ccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcc
Q 040751          275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPEC  326 (405)
Q Consensus       275 l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  326 (405)
                        +.+++++|+++|+++.. ..        +.|+..++.+++++|+++|++.
T Consensus       207 --~~~~v~~Ll~~gad~~~-~~--------~~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          207 --DIEMLQALFKYDINIYS-AN--------LENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             --CHHHHHHHTTSCBCSTT-TT--------GGGGTTTCHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHcCCCCCC-CC--------hhhhhcCCHHHHHHHHHcCCCC
Confidence              55799999999988732 21        3567899999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.4e-36  Score=252.51  Aligned_cols=215  Identities=20%  Similarity=0.196  Sum_probs=193.3

Q ss_pred             CCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHH
Q 040751           41 GNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVT  119 (405)
Q Consensus        41 g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  119 (405)
                      |+.++|++|++.|.+.+ ..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+..|+.++++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   75 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQ   75 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            78999999999998877 4477899999999  99999999999987    46778889999999999999999999999


Q ss_pred             HHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC
Q 040751          120 FLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRS  199 (405)
Q Consensus       120 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~  199 (405)
                      +|+++++..                 ++..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..|+
T Consensus        76 ~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  137 (223)
T 2f8y_A           76 ILIRNRATD-----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNN  137 (223)
T ss_dssp             HHHHBTTSC-----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTC
T ss_pred             HHHHcCCCC-----------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCC
Confidence            999998732                 45778899999999999999999999999999988 788899999999999999


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccc
Q 040751          200 SDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG  279 (405)
Q Consensus       200 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~  279 (405)
                      .+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.+ ++.++..|.||+++|+..+         +.+
T Consensus       138 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~---------~~~  205 (223)
T 2f8y_A          138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--ETAKVLLDHFAN-RDITDHMDRLPRDIAQERM---------HHD  205 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT---------CHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH--HHHHHHHHcCCC-CccccccCCCHHHHHHHhc---------chH
Confidence            9999999999999999999999999999999999  999999998876 7888999999999999998         557


Q ss_pred             hhHHHHhhcccc
Q 040751          280 TVNLLLETDQSA  291 (405)
Q Consensus       280 ~~~~Ll~~~~~~  291 (405)
                      ++++|++++...
T Consensus       206 i~~~L~~~g~~~  217 (223)
T 2f8y_A          206 IVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHTTCSS
T ss_pred             HHHHHHHcCCCc
Confidence            889999888754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.3e-35  Score=247.41  Aligned_cols=215  Identities=26%  Similarity=0.283  Sum_probs=188.7

Q ss_pred             hhcccHHHHHHHHHhCCcccc-cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCc
Q 040751           76 RENVSTEFVEEILEKCPSLLL-QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN  154 (405)
Q Consensus        76 ~~~~~~~~l~~~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  154 (405)
                      |+.+++++|++    .+..++ ..+..|.||||+|+..|+.+++++|+++|++++                  ..+..|.
T Consensus         2 g~~~~i~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~   59 (223)
T 2f8y_A            2 DAPAVISDFIY----QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------------IQDNMGR   59 (223)
T ss_dssp             ---CCEETTEE----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSC
T ss_pred             CcHHHHHHHHH----cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC------------------CcCCCCC
Confidence            56677777755    234444 458899999999999999999999999998854                  7889999


Q ss_pred             hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCcc
Q 040751          155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV  234 (405)
Q Consensus       155 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~  234 (405)
                      ||||+|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++. 
T Consensus        60 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-  138 (223)
T 2f8y_A           60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV-  138 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCH-
Confidence            9999999999999999999998843347889999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHH
Q 040751          235 DTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAE  314 (405)
Q Consensus       235 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~  314 (405)
                       +++++|++.+.+ ++.++..|.||||+|+..|         +.+++++|++++.+. +..+ ..|.||+++|+..++.+
T Consensus       139 -~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-~~~~-~~g~t~l~~A~~~~~~~  205 (223)
T 2f8y_A          139 -DAAVVLLKNGAN-KDMQNNREETPLFLAAREG---------SYETAKVLLDHFANR-DITD-HMDRLPRDIAQERMHHD  205 (223)
T ss_dssp             -HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHH
T ss_pred             -HHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcC---------CHHHHHHHHHcCCCC-cccc-ccCCCHHHHHHHhcchH
Confidence             999999998765 7888999999999999998         557999999999877 3333 48999999999999999


Q ss_pred             HHHHHHhcCCcc
Q 040751          315 IVDAIISKNPEC  326 (405)
Q Consensus       315 ~v~~Ll~~~~~~  326 (405)
                      ++++|+++|+..
T Consensus       206 i~~~L~~~g~~~  217 (223)
T 2f8y_A          206 IVRLLDEYNLVR  217 (223)
T ss_dssp             HHHHHHHTTCSS
T ss_pred             HHHHHHHcCCCc
Confidence            999999999864

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-36  Score=268.43  Aligned_cols=273  Identities=19%  Similarity=0.212  Sum_probs=217.4

Q ss_pred             HHhhcCCCchhhhhHHHHHHHh---------hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHH
Q 040751           36 KAAADGNVEPFKDMAREKIESL---------LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPL  106 (405)
Q Consensus        36 ~A~~~g~~~~v~~ll~~~~~~~---------~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L  106 (405)
                      .+++.+..+.++.++.......         ..+..|.||||+|  +..|+.+++++|++.    +.+++..+..|.|||
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L   77 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTAL   77 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHH
Confidence            4667777778888877653222         2234588999999  999999999999873    667888999999999


Q ss_pred             HHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCC
Q 040751          107 HVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND  186 (405)
Q Consensus       107 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~  186 (405)
                      |+|+..|+.++|++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++ ..+..
T Consensus        78 ~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~  138 (299)
T 1s70_B           78 HQACIDDNVDMVKFLVENGANIN------------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSE  138 (299)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC------------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCC
Confidence            99999999999999999999854                  788899999999999999999999999999988 78899


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH
Q 040751          187 GKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY  265 (405)
Q Consensus       187 g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~  265 (405)
                      |.||||+|+..++.++++.++. .|.+++..+..+.+++.          ..+..++..+.......+..|.||||+|+.
T Consensus       139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~  208 (299)
T 1s70_B          139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML----------RDARQWLNSGHINDVRHAKSGGTALHVAAA  208 (299)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH----------HHHHHHHhccCcchhhhcCCCCCHHHHHHH
Confidence            9999999999999999998875 45655443322222222          344555555555455567789999999999


Q ss_pred             cChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhc
Q 040751          266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTR  345 (405)
Q Consensus       266 ~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~  345 (405)
                      .|         +.+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|+++|+++                   
T Consensus       209 ~g---------~~~~v~~Ll~~g~d~-~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-------------------  258 (299)
T 1s70_B          209 KG---------YTEVLKLLIQARYDV-NIKD-YDGWTPLHAAAHWGKEEACRILVENLCDM-------------------  258 (299)
T ss_dssp             HT---------CHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------------
T ss_pred             CC---------cHHHHHHHHHcCCCC-CCcC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCC-------------------
Confidence            98         557999999999877 4333 48999999999999999999999999874                   


Q ss_pred             cccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          346 SLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       346 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                         +.+|..|.|||++|++ +..++++.+++.
T Consensus       259 ---~~~d~~g~t~l~~A~~-~~~~~l~~l~~~  286 (299)
T 1s70_B          259 ---EAVNKVGQTAFDVADE-DILGYLEELQKK  286 (299)
T ss_dssp             ---TCCCTTSCCTTTSCCS-GGGHHHHHHHHH
T ss_pred             ---CCcCCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence               4556667777777754 445666666654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.4e-36  Score=253.98  Aligned_cols=217  Identities=20%  Similarity=0.225  Sum_probs=186.3

Q ss_pred             hccCCCchHhHHHHhCCCHHHHHHHHhcCC----CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 040751          148 MTNNEKNTALHEAVCHKNVDVVKILTKEDP----DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTA  223 (405)
Q Consensus       148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  223 (405)
                      ..|.+|.||||+|+..|+.+++++|++.+.    +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            467899999999999999999999998875    455 678899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCccHHHHHHHHHhhhh-----hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccccccc
Q 040751          224 LHAAAMKFDLVDTALRKLLEKKEN-----LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD  298 (405)
Q Consensus       224 L~~a~~~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~  298 (405)
                      ||+|+..++.  +++++|+..+..     .++..+..|.||||+|+..|         +.+++++|++.+.++ +.....
T Consensus        82 L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~-~~~~~~  149 (236)
T 1ikn_D           82 LHLACEQGCL--ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG---------YLGIVELLVSLGADV-NAQEPC  149 (236)
T ss_dssp             HHHHHHHTCH--HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT---------CHHHHHHHHHHTCCT-TCCCTT
T ss_pred             HHHHHHcCCH--HHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCC-CCCCCC
Confidence            9999999999  999999998753     25677888999999999998         557999999999887 333333


Q ss_pred             CCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcc
Q 040751          299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNT  378 (405)
Q Consensus       299 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~  378 (405)
                      .|.||||+|+..|+.+++++|+++|++                      ++.+|..|.||||+|+..|+.+++++|+++ 
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~----------------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-  206 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLKCGAD----------------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-  206 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCC----------------------SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------CCcccCCCCCHHHHHHccCchHHHHHHHHc-
Confidence            899999999999999999999999887                      456677889999999999999999999998 


Q ss_pred             ccccc--cccCCCCchhhhhhccc
Q 040751          379 QVNYD--AVNKQNVSVEHILDYEH  400 (405)
Q Consensus       379 g~d~~--~~~~~g~t~l~~a~~~~  400 (405)
                      |+++.  ..+..|.||.+.+....
T Consensus       207 ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          207 TLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             SCGGGSSCCCCCTTTCCCCC----
T ss_pred             chhhhhcCCccchHHHHhhhcccc
Confidence            99887  88999999999876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-36  Score=269.54  Aligned_cols=259  Identities=17%  Similarity=0.118  Sum_probs=197.4

Q ss_pred             hhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc-------------ccCCCCh
Q 040751           38 AADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQ-------------VNAKGDT  104 (405)
Q Consensus        38 ~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~g~t  104 (405)
                      +.....++|++|++.|++.+..+..|.++++       |+.+++++|++...........             ......+
T Consensus        27 ~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-------g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   99 (327)
T 1sw6_A           27 IITFTHDLTSDFLSSPLKIMKALPSPVVNDN-------EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ   99 (327)
T ss_dssp             EEECCTTCCCSTTTSSCCCEECBCCCCCCCH-------HHHHHHHHHHHHHHC---------------------------
T ss_pred             hhhhcCchHHHHhhCCcccccCCCCCCcccC-------chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccc
Confidence            3456667899999999988888888988866       8899999998743221110000             1111223


Q ss_pred             HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhh-ccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKM-TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      .+|.|+..+..+++++|++.|++++                  . .+..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn------------------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~  160 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLN------------------IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YG  160 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSC------------------SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BC
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcc------------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-Cc
Confidence            4688899999999999999999864                  6 78999999999999999999999999999998 78


Q ss_pred             CCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCcccCCCCCcHHHHHHh----cCCccHHHHHHHHHhh----------
Q 040751          184 NNDGKTPLYMAAESRS---SDMVLALLENS-TSVSHEGPNGKTALHAAAM----KFDLVDTALRKLLEKK----------  245 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~---~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~----~~~~~~~~v~~Ll~~~----------  245 (405)
                      +..|.||||+|+..|+   .++++.|++++ ++++.++..|+||||+|+.    .+..  ++++.|++..          
T Consensus       161 d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~--~~v~~Ll~~~~~~~~~~~~~  238 (327)
T 1sw6_A          161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS--AAAKYYLDILMGWIVKKQNR  238 (327)
T ss_dssp             CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCH--HHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccH--HHHHHHHHHHHHHHhcccch
Confidence            9999999999999998   78888888887 7899999999999999999    8888  9999999874          


Q ss_pred             ---------hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHH
Q 040751          246 ---------ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV  316 (405)
Q Consensus       246 ---------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v  316 (405)
                               +..++.++..|.||||.|+               .+++|++.+  + +..+ ..|+||||+|+..|+.+++
T Consensus       239 ~i~~~~~~~g~~~~~~~~~g~t~L~~a~---------------~~~~Ll~~~--~-n~~d-~~G~TpLh~A~~~g~~~~v  299 (327)
T 1sw6_A          239 PIQSGTNEKESKPNDKNGERKDSILENL---------------DLKWIIANM--L-NAQD-SNGDTCLNIAARLGNISIV  299 (327)
T ss_dssp             CEEEC----------------CHHHHHC---------------SHHHHHHHT--T-TCCC-TTSCCHHHHHHHHCCHHHH
T ss_pred             HHHhhhhcccCCcccccccCCChhHHHH---------------HHHHHHHhC--C-CCCC-CCCCCHHHHHHHcCCHHHH
Confidence                     3447778899999999986               277777773  2 3333 4899999999999999999


Q ss_pred             HHHHhcCCcccccccCCCChHHHHHHHh
Q 040751          317 DAIISKNPECYELVDNRGWNFLHYAVVT  344 (405)
Q Consensus       317 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  344 (405)
                      ++|+++|+++ +.+|..|+||||+|+.+
T Consensus       300 ~~Ll~~Gad~-~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          300 DALLDYGADP-FIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHTTCCT-TCCCTTSCCGGGGTCC-
T ss_pred             HHHHHcCCCC-cccCCCCCCHHHHHHhc
Confidence            9999999997 77788888888877654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-33  Score=240.24  Aligned_cols=200  Identities=25%  Similarity=0.270  Sum_probs=176.2

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCC
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY  179 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~  179 (405)
                      .|.||||+|+..|+.+++++|++. |+++                  +..+..|.||||+|+..|+.+++++|++.|+++
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~   63 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV------------------HQRGAMGETALHIAALYDNLEAAMVLMEAAPEL   63 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchh
Confidence            589999999999999999999998 8774                  478999999999999999999999999999886


Q ss_pred             c----cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------CCCcHHHHHHhcCCccHHHHHHHH
Q 040751          180 R----YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP-------------NGKTALHAAAMKFDLVDTALRKLL  242 (405)
Q Consensus       180 ~----~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-------------~~~t~L~~a~~~~~~~~~~v~~Ll  242 (405)
                      .    ...+..|.||||+|+..|+.+++++|+++|++++..+.             .|.||||+|+..++.  +++++|+
T Consensus        64 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll  141 (232)
T 2rfa_A           64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE--EIVRLLI  141 (232)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH--HHHHHHH
T ss_pred             ccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH--HHHHHHH
Confidence            3    24567899999999999999999999999999988765             799999999999999  9999999


Q ss_pred             HhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccc----cccccCCccHHHHHHhcCCHHHHHH
Q 040751          243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASN----IADKDRKMTALHLAAGQGNAEIVDA  318 (405)
Q Consensus       243 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~----~~~~~~g~t~l~~A~~~~~~~~v~~  318 (405)
                      +.+.+ ++.+|..|.||||+|+..++.++..     .++++|++.+.+...    ...+..|.||||+|+..|+.+++++
T Consensus       142 ~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~-----~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~  215 (232)
T 2rfa_A          142 EHGAD-IRAQDSLGNTVLHILILQPNKTFAC-----QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH  215 (232)
T ss_dssp             HTTCC-TTCCCTTSCCHHHHHHTCSCHHHHH-----HHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HCCCC-CCCCCCCCCCHHHHHHHcCChHHHH-----HHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence            98766 7889999999999999998665433     355999999987631    2334589999999999999999999


Q ss_pred             HHhcCCcc
Q 040751          319 IISKNPEC  326 (405)
Q Consensus       319 Ll~~~~~~  326 (405)
                      |+++|+..
T Consensus       216 Ll~~g~~~  223 (232)
T 2rfa_A          216 LMQKRKHI  223 (232)
T ss_dssp             HHHHHHHC
T ss_pred             HHhcCccc
Confidence            99998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.2e-35  Score=251.44  Aligned_cols=165  Identities=25%  Similarity=0.229  Sum_probs=98.1

Q ss_pred             hhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751           59 TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG  138 (405)
Q Consensus        59 ~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  138 (405)
                      .+.+|.||||+|  +..|+.+++++|++.....+..++..+..|.||||+|+..|+.++|++|+++|++++         
T Consensus         4 ~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------   72 (236)
T 1ikn_D            4 LTEDGDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE---------   72 (236)
T ss_dssp             ---CCCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC---------
T ss_pred             CCCCCCchhHHH--HHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            345566666666  666666666666554333334556666666666666666666666666666666543         


Q ss_pred             hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751          139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY-----RYSANNDGKTPLYMAAESRSSDMVLALLENSTSV  213 (405)
Q Consensus       139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~  213 (405)
                               ..+..|.||||+|+..|+.+++++|++.|.+.     ....+..|.||||+|+..|+.+++++|+++|+++
T Consensus        73 ---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  143 (236)
T 1ikn_D           73 ---------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV  143 (236)
T ss_dssp             ---------CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred             ---------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                     55666666666666666666666666666431     1244556666666666666666666666666666


Q ss_pred             cccCC-CCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          214 SHEGP-NGKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       214 ~~~~~-~~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      +.++. .|.||||+|+..++.  +++++|++.+
T Consensus       144 ~~~~~~~g~tpL~~A~~~~~~--~~v~~Ll~~g  174 (236)
T 1ikn_D          144 NAQEPCNGRTALHLAVDLQNP--DLVSLLLKCG  174 (236)
T ss_dssp             TCCCTTTCCCHHHHHHHTTCH--HHHHHHHTTT
T ss_pred             CCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcC
Confidence            66554 566666666665555  5555555443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.4e-34  Score=229.17  Aligned_cols=161  Identities=24%  Similarity=0.379  Sum_probs=134.9

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      +.++|+.||+.|++++|+.|++.|++++..+..|+||||+|  +..++.+++++|++    .+.+++..|..|+||||+|
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A   77 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHA   77 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHh----cccchhhhccCCCCHHHHH
Confidence            44578999999999999999999988888888899999999  88888888888876    4677888888899999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCc
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKT  189 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  189 (405)
                      +..|+.++|++|+++|++++                  .+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.|
T Consensus        78 ~~~g~~~~v~~Ll~~gadvn------------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~T  138 (169)
T 4gpm_A           78 AENGHKEVVKLLISKGADVN------------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRT  138 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred             HHcCCHHHHHHHHHCcCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCC
Confidence            99999999999999988854                  788889999999999999999999999998887 77888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcc
Q 040751          190 PLYMAAESRSSDMVLALLENSTSVSH  215 (405)
Q Consensus       190 ~L~~a~~~~~~~~v~~Ll~~g~~~~~  215 (405)
                      |||+|+..|+.+++++|+++|++++.
T Consensus       139 pL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          139 PLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHTC------
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999999999988764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.7e-33  Score=243.83  Aligned_cols=223  Identities=21%  Similarity=0.263  Sum_probs=175.3

Q ss_pred             HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccc----cccCCCChHHHHHHHh---CcHHHHHHHHHccC
Q 040751           54 IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL----QVNAKGDTPLHVAAKF---GHSGIVTFLVERAK  126 (405)
Q Consensus        54 ~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~  126 (405)
                      ......+..|.||||+|  +..|+.++++.|++.....+..++    ..+..|.||||+|+..   |+.++|++|+++|+
T Consensus         4 a~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             -------CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             ccCCCCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            33446677799999999  999999999998886655555554    3578999999999987   99999999999987


Q ss_pred             CCCCchhHHhhhhhHHHHHhhh----ccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCC--------------CCC
Q 040751          127 LPQHENEELESGVGAARQMIKM----TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN--------------DGK  188 (405)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~  188 (405)
                      +....           ...++.    .+..|.||||+|+..|+.+++++|+++|++++ ..+.              .|.
T Consensus        82 ~~~~~-----------~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~  149 (273)
T 2pnn_A           82 KTDSL-----------KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGE  149 (273)
T ss_dssp             HTTCH-----------HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCB
T ss_pred             cccch-----------hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCC
Confidence            54311           111222    56689999999999999999999999999988 5554              799


Q ss_pred             cHHHHHHHcCCHHHHHHHHH---cCCCCcccCCCCCcHHHHHHhcCC---------ccHHHHHHHHHhhhhhhh------
Q 040751          189 TPLYMAAESRSSDMVLALLE---NSTSVSHEGPNGKTALHAAAMKFD---------LVDTALRKLLEKKENLIK------  250 (405)
Q Consensus       189 t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~L~~a~~~~~---------~~~~~v~~Ll~~~~~~~~------  250 (405)
                      ||||+|+..|+.+++++|++   +|++++.+|..|.||||+|+..++         .  +++++|++.+.+ ++      
T Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~--~~v~~Ll~~ga~-~n~~~~~~  226 (273)
T 2pnn_A          150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT--SMYNEILILGAK-LHPTLKLE  226 (273)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH--HHHHHHHHHHHH-HCTTCCGG
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH--HHHHHHHHhhhh-cccccccc
Confidence            99999999999999999999   999999999999999999999887         5  889999998876 43      


Q ss_pred             -hcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH
Q 040751          251 -ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA  303 (405)
Q Consensus       251 -~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  303 (405)
                       .++..|.||||+|+..|         +.+++++|+++|+..+..... .+.+|
T Consensus       227 ~~~d~~g~TpL~~A~~~g---------~~~iv~~Ll~~ga~dp~~~~~-~~~~~  270 (273)
T 2pnn_A          227 EITNRKGLTPLALAASSG---------KIGVLAYILQREIHEPECRHA-AAHHH  270 (273)
T ss_dssp             GCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHHTC-------------
T ss_pred             cccCCCCCCHHHHHHHhC---------hHHHHHHHHHCCCCCchhhhh-hhhhc
Confidence             58899999999999998         558999999999865444333 33333

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.2e-32  Score=226.93  Aligned_cols=192  Identities=20%  Similarity=0.284  Sum_probs=173.4

Q ss_pred             CCCchHhHHHHhCCCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q 040751          151 NEKNTALHEAVCHKNVDVVKILTKEDP-DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM  229 (405)
Q Consensus       151 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~  229 (405)
                      ..+.||||.|+..|+.+.++.|+..+. +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            468899999999999999999999977 665 788899999999999999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHh
Q 040751          230 KFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG  309 (405)
Q Consensus       230 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~  309 (405)
                      .++.  +++++|+...+..++..+..|.||||+|+..|         +.+++++|++.+....+..+ ..|.||||+|+.
T Consensus        82 ~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~  149 (201)
T 3hra_A           82 QGRT--EILAYMLKHATPDLNKHNRYGGNALIPAAEKG---------HIDNVKLLLEDGREDIDFQN-DFGYTALIEAVG  149 (201)
T ss_dssp             TTCH--HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT---------CHHHHHHHHHHCCCCTTCCC-TTSCCHHHHHHH
T ss_pred             cCCH--HHHHHHHhccCcccccccCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCCcCCCC-CCCCCHHHHHHH
Confidence            9999  99999998777778889999999999999998         55799999999843324444 489999999999


Q ss_pred             cCC-----HHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          310 QGN-----AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       310 ~~~-----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                      .++     .+++++|+++|++                      ++.+|..|.||||+|++.|+.+++++|+++
T Consensus       150 ~~~~~~~~~~~v~~Ll~~ga~----------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          150 LREGNQLYQDIVKLLMENGAD----------------------QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             SSCCSHHHHHHHHHHHHTTCC----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             hccchhhHHHHHHHHHHCCCC----------------------CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            998     9999999999987                      456677889999999999999999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.5e-33  Score=241.72  Aligned_cols=207  Identities=22%  Similarity=0.231  Sum_probs=176.1

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc----ccCCCChHHHHHHHh---CcHHHHHHHHHccCCCCCchhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQ----VNAKGDTPLHVAAKF---GHSGIVTFLVERAKLPQHENEEL  135 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~  135 (405)
                      |+||||+|  +..|+.+.++.|++.+...+..++.    .+..|.||||+|+..   |+.++|++|+++|++.+......
T Consensus         2 G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            88999999  9999999887777766666777887    899999999999999   99999999999987653221110


Q ss_pred             hhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCC-------------CCcHHHHHHHcCCHHH
Q 040751          136 ESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND-------------GKTPLYMAAESRSSDM  202 (405)
Q Consensus       136 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~L~~a~~~~~~~~  202 (405)
                      ...       ....+..|.||||+|+..|+.+++++|+++|++++ ..+..             |.||||+|+..|+.++
T Consensus        80 ~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~  151 (256)
T 2etb_A           80 NAQ-------CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV  151 (256)
T ss_dssp             GCC-------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred             ccc-------cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence            000       11234679999999999999999999999999988 55554             9999999999999999


Q ss_pred             HHHHHH---cCCCCcccCCCCCcHHHHHHh--cCCccHH-------HHHHHHHhhhhhh-------hhcccCCCCHHHHH
Q 040751          203 VLALLE---NSTSVSHEGPNGKTALHAAAM--KFDLVDT-------ALRKLLEKKENLI-------KETDQYGWTPIHYA  263 (405)
Q Consensus       203 v~~Ll~---~g~~~~~~~~~~~t~L~~a~~--~~~~~~~-------~v~~Ll~~~~~~~-------~~~~~~~~t~l~~a  263 (405)
                      +++|++   +|++++.+|..|+||||+|+.  .+..  +       ++++|++.+.+ +       +.++..|.||||+|
T Consensus       152 v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~--~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP--ENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH--HHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc--hhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHH
Confidence            999999   999999999999999999999  5666  7       99999998877 5       78899999999999


Q ss_pred             HHcChhhhhhhccccchhHHHHhhcccc
Q 040751          264 AYHGMYWINRFYGNYGTVNLLLETDQSA  291 (405)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~Ll~~~~~~  291 (405)
                      +..|         +.+++++|++++...
T Consensus       229 ~~~g---------~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          229 AKEG---------KIEIFRHILQREFSG  247 (256)
T ss_dssp             HHTT---------CHHHHHHHHHHHHHH
T ss_pred             HHhC---------CHHHHHHHHhCCCCC
Confidence            9998         557999999988765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.2e-32  Score=226.87  Aligned_cols=199  Identities=22%  Similarity=0.251  Sum_probs=176.3

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD  178 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  178 (405)
                      +..+.||||.|+..|+.+.++.|++.+...                 ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   64 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----------------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD   64 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            356889999999999999999999988722                 457888999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751          179 YRYSANNDGKTPLYMAAESRSSDMVLALL-ENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW  257 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  257 (405)
                      ++ ..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||.|+..++.  +++++|++.+..+++.++..|.
T Consensus        65 ~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~~g~  141 (201)
T 3hra_A           65 IN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI--DNVKLLLEDGREDIDFQNDFGY  141 (201)
T ss_dssp             TT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCH--HHHHHHHHHCCCCTTCCCTTSC
T ss_pred             CC-CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCcCCCCCCCC
Confidence            98 78899999999999999999999999 66779999999999999999999999  9999999998666889999999


Q ss_pred             CHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcC
Q 040751          258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN  323 (405)
Q Consensus       258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  323 (405)
                      ||||+|+..+....    +..+++++|++.|.++ +..+ ..|.||||+|+..|+.+++++|+++|
T Consensus       142 t~L~~A~~~~~~~~----~~~~~v~~Ll~~ga~~-~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          142 TALIEAVGLREGNQ----LYQDIVKLLMENGADQ-SIKD-NSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CHHHHHHHSSCCSH----HHHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CHHHHHHHhccchh----hHHHHHHHHHHCCCCC-CccC-CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999998873100    0157999999999887 4333 48999999999999999999999876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=7.7e-33  Score=240.99  Aligned_cols=223  Identities=19%  Similarity=0.143  Sum_probs=171.2

Q ss_pred             hcCCHHHHHHhhcCCCchhhhhHHHHHHHh--------hhhccccchhhHhhhhhh---hhcccHHHHHHHHHhCC----
Q 040751           28 SQMDPKFFKAAADGNVEPFKDMAREKIESL--------LTAKTRNTILHINIISKE---RENVSTEFVEEILEKCP----   92 (405)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~~~L~~a~~~~~---~~~~~~~~l~~~~~~~~----   92 (405)
                      ..-.++||.|++.|++++|+.|++.+.+..        ..+..|+||||+|  +..   |+.+++++|++.-....    
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHhhccccchhH
Confidence            334568999999999999999999876543        2367899999999  765   99999999998533211    


Q ss_pred             ---cccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHH
Q 040751           93 ---SLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVV  169 (405)
Q Consensus        93 ---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  169 (405)
                         ......+..|.||||+|+..|+.++|++|+++|++++..+......    .......+..|.||||+|+..|+.+++
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~----~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK----KTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS----SCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc----cccccccccCCCCHHHHHHHcCCHHHH
Confidence               1123356789999999999999999999999999865221100000    000001123799999999999999999


Q ss_pred             HHHHh---cCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc-------ccCCCCCcHHHHHHhc
Q 040751          170 KILTK---EDPDYRYSANNDGKTPLYMAAESRS---------SDMVLALLENSTSVS-------HEGPNGKTALHAAAMK  230 (405)
Q Consensus       170 ~~Ll~---~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~~~t~L~~a~~~  230 (405)
                      ++|++   .|++++ ..+..|.||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+..
T Consensus       165 ~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          165 KFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            99999   899998 789999999999999998         899999999999986       4899999999999999


Q ss_pred             CCccHHHHHHHHHhhhhhhhhcccCCCCH
Q 040751          231 FDLVDTALRKLLEKKENLIKETDQYGWTP  259 (405)
Q Consensus       231 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~  259 (405)
                      ++.  +++++|++.+..+.......+.+|
T Consensus       244 g~~--~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          244 GKI--GVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             TCH--HHHHHHHHHHTC------------
T ss_pred             ChH--HHHHHHHHCCCCCchhhhhhhhhc
Confidence            999  999999999985555555555544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.6e-32  Score=236.71  Aligned_cols=194  Identities=20%  Similarity=0.183  Sum_probs=168.4

Q ss_pred             HHHHHHhhcCCCchhhhhHH----HHHHHhh----hhccccchhhHhhhhhh---hhcccHHHHHHHHHhCCcc------
Q 040751           32 PKFFKAAADGNVEPFKDMAR----EKIESLL----TAKTRNTILHINIISKE---RENVSTEFVEEILEKCPSL------   94 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~----~~~~~~~----~~~~g~~~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~------   94 (405)
                      ++||.|++.|+.+.|+.+++    .|.+.+.    .+..|.||||+|  +..   |+.+++++|++.-......      
T Consensus         4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            58999999999997765554    6776666    788899999999  988   9999999999853322110      


Q ss_pred             -cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCC-------------CchHhHHH
Q 040751           95 -LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNE-------------KNTALHEA  160 (405)
Q Consensus        95 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------g~t~L~~A  160 (405)
                       ....|..|.||||+|+..|+.++|++|+++|++++                  ..+..             |.||||+|
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~~~~~~~~~~~~~~g~tpL~~A  143 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH------------------LRACGRFFQKHQGTCFYFGELPLSLA  143 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCCSGGGSCCSSSCCCSCSSHHHHH
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------cccccccccccccccccCCCCHHHHH
Confidence             11345779999999999999999999999999865                  44443             99999999


Q ss_pred             HhCCCHHHHHHHHh---cCCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------cccCCCCC
Q 040751          161 VCHKNVDVVKILTK---EDPDYRYSANNDGKTPLYMAAE--SRSSD-------MVLALLENSTSV-------SHEGPNGK  221 (405)
Q Consensus       161 ~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~  221 (405)
                      +..|+.+++++|++   .|++++ ..+..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.
T Consensus       144 ~~~~~~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~  222 (256)
T 2etb_A          144 ACTKQWDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL  222 (256)
T ss_dssp             HHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred             HHcCCHHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence            99999999999999   999998 789999999999999  78888       999999999999       89999999


Q ss_pred             cHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751          222 TALHAAAMKFDLVDTALRKLLEKKENL  248 (405)
Q Consensus       222 t~L~~a~~~~~~~~~~v~~Ll~~~~~~  248 (405)
                      ||||+|+..|+.  +++++|++.+...
T Consensus       223 tpL~~A~~~g~~--~~v~~Ll~~g~~~  247 (256)
T 2etb_A          223 TPLKLAAKEGKI--EIFRHILQREFSG  247 (256)
T ss_dssp             CHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCH--HHHHHHHhCCCCC
Confidence            999999999999  9999999988764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=1.9e-31  Score=213.24  Aligned_cols=158  Identities=29%  Similarity=0.397  Sum_probs=145.3

Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      ++|+.|++.|+.++|++|+++|++++                  .+|..|.||||+|+..++.+++++|++.|++++ ..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn------------------~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~   66 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVN------------------ASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AK   66 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hh
Confidence            57999999999999999999999854                  889999999999999999999999999999998 78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHH
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA  263 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  263 (405)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.  +++++|++.+.+ ++.++..|.|||++|
T Consensus        67 d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~--~~v~~Ll~~gad-~~~~d~~G~TpL~~A  143 (169)
T 4gpm_A           67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK--EVVKLLISKGAD-VNTSDSDGRTPLDLA  143 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999  999999998876 788999999999999


Q ss_pred             HHcChhhhhhhccccchhHHHHhhccccc
Q 040751          264 AYHGMYWINRFYGNYGTVNLLLETDQSAS  292 (405)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~  292 (405)
                      +..|         +.+++++|+++|+++.
T Consensus       144 ~~~g---------~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          144 REHG---------NEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHTT---------CHHHHHHHHTC-----
T ss_pred             HHcC---------CHHHHHHHHHCCCCcC
Confidence            9998         5579999999998773

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=4.7e-32  Score=234.31  Aligned_cols=194  Identities=21%  Similarity=0.232  Sum_probs=169.3

Q ss_pred             HHHHHHhhcCCCchhhhhHH----HHHHHhhhh----ccccchhhHhhhh---hhhhcccHHHHHHHHHhCC-------c
Q 040751           32 PKFFKAAADGNVEPFKDMAR----EKIESLLTA----KTRNTILHINIIS---KERENVSTEFVEEILEKCP-------S   93 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~~~L~~a~~~---~~~~~~~~~~l~~~~~~~~-------~   93 (405)
                      ++||.|++.|+.+.|+.|++    .|.+.+..+    ..|.||||+|  +   ..|+.+++++|++.-....       .
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            57999999999998888887    665555333    6699999999  6   7899999999998533321       2


Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc--------------CCCchHhHH
Q 040751           94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN--------------NEKNTALHE  159 (405)
Q Consensus        94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~t~L~~  159 (405)
                      .+...|..|.||||+|+..|+.++|++|+++|++++                  ..+              ..|.||||+
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~~~~~~~~~~~~~~~g~tpL~~  146 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH------------------AQARGRFFQPKDEGGYFYFGELPLSL  146 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCEECCCSSSCCCCSCCSCSSHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC------------------ccccccccCcccccccccCCCCHHHH
Confidence            345556689999999999999999999999999865                  444              579999999


Q ss_pred             HHhCCCHHHHHHHHh---cCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------cccCCCC
Q 040751          160 AVCHKNVDVVKILTK---EDPDYRYSANNDGKTPLYMAAESRS---------SDMVLALLENSTSV-------SHEGPNG  220 (405)
Q Consensus       160 A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~~  220 (405)
                      |+..|+.+++++|++   .|++++ ..+..|.||||+|+..++         .+++++|+++|+++       +..+..|
T Consensus       147 A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g  225 (260)
T 3jxi_A          147 AACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG  225 (260)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             HHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence            999999999999999   899998 789999999999999887         79999999999998       6799999


Q ss_pred             CcHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751          221 KTALHAAAMKFDLVDTALRKLLEKKENL  248 (405)
Q Consensus       221 ~t~L~~a~~~~~~~~~~v~~Ll~~~~~~  248 (405)
                      .||||+|+..|+.  +++++|++++...
T Consensus       226 ~tpL~~A~~~g~~--~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          226 LSPLMMAAKTGKI--GIFQHIIRREIAD  251 (260)
T ss_dssp             CCHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCH--HHHHHHHHhCCCc
Confidence            9999999999999  9999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=4.9e-32  Score=234.20  Aligned_cols=209  Identities=21%  Similarity=0.224  Sum_probs=176.9

Q ss_pred             ccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc----CCCChHHHHHH---HhCcHHHHHHHHHccCCCCCchh
Q 040751           61 KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN----AKGDTPLHVAA---KFGHSGIVTFLVERAKLPQHENE  133 (405)
Q Consensus        61 ~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~  133 (405)
                      ..++++||.|  +..|+.+.++.|++.+...+..++..+    ..|.||||+|+   ..|+.++|++|+++|+++.....
T Consensus         3 ~~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            4588999999  999999998888887666666676555    67999999999   67999999999999865431111


Q ss_pred             HHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC--------------CCCCcHHHHHHHcCC
Q 040751          134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN--------------NDGKTPLYMAAESRS  199 (405)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~L~~a~~~~~  199 (405)
                      ..       ...++..+..|.||||+|+..|+.+++++|+++|++++ ..+              ..|.||||+|+..|+
T Consensus        81 ~~-------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  152 (260)
T 3jxi_A           81 FI-------NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQ  152 (260)
T ss_dssp             HH-------TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC
T ss_pred             hh-------cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCC
Confidence            00       00123345589999999999999999999999999998 555              589999999999999


Q ss_pred             HHHHHHHHH---cCCCCcccCCCCCcHHHHHHhcCC---------ccHHHHHHHHHhhhhhh-------hhcccCCCCHH
Q 040751          200 SDMVLALLE---NSTSVSHEGPNGKTALHAAAMKFD---------LVDTALRKLLEKKENLI-------KETDQYGWTPI  260 (405)
Q Consensus       200 ~~~v~~Ll~---~g~~~~~~~~~~~t~L~~a~~~~~---------~~~~~v~~Ll~~~~~~~-------~~~~~~~~t~l  260 (405)
                      .+++++|++   +|++++.+|..|.||||+|+..++         .  +++++|++.+.+ +       +.++..|.|||
T Consensus       153 ~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~--~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT--KMYDLLLIKCAK-LFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHH--HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHH
T ss_pred             HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHH--HHHHHHHHhCcc-cccccchhhcccCCCCCHH
Confidence            999999999   999999999999999999998877         5  899999998876 4       67899999999


Q ss_pred             HHHHHcChhhhhhhccccchhHHHHhhcccc
Q 040751          261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSA  291 (405)
Q Consensus       261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~  291 (405)
                      |+|+..|         +.+++++|++++...
T Consensus       230 ~~A~~~g---------~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          230 MMAAKTG---------KIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHTT---------CHHHHHHHHHHHHHH
T ss_pred             HHHHHcC---------CHHHHHHHHHhCCCc
Confidence            9999998         558999999998766

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.97  E-value=1.7e-33  Score=253.18  Aligned_cols=291  Identities=11%  Similarity=0.058  Sum_probs=194.5

Q ss_pred             HHHHHhh-cCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751           33 KFFKAAA-DGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK  111 (405)
Q Consensus        33 ~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  111 (405)
                      .++.|.. .++.+.++++++.|.+       +.||||+|  +..|+.+++++|++... ........+..|.||||+|+.
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~A--a~~G~~e~v~~Ll~~ga-~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVA--AITGCSSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHH--HHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHH--HHcCCHHHHHHHHHcCC-cHHHHHHhccCCCCHHHHHHH
Confidence            4555655 5778888888877653       66999999  99999999999977211 111223455668899999999


Q ss_pred             hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc-ccCCCCCcH
Q 040751          112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY-SANNDGKTP  190 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~  190 (405)
                      .|+.++|++|+++|++...               .+..+.+ .||||+|+..|+.+++++|+++|++++. ..+..|.||
T Consensus       138 ~G~~eiv~~Ll~~gad~~~---------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp  201 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIM---------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  201 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHH---------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc---------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence            9999999999999975310               0111222 8999999999999999999999998762 167788999


Q ss_pred             HHHHH-HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChh
Q 040751          191 LYMAA-ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMY  269 (405)
Q Consensus       191 L~~a~-~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  269 (405)
                      ||+|+ ..|+.++|++|+++|++       +.|||+.|+..|+.  +++++|++.+.. ++..+    ++++.|+..|+.
T Consensus       202 L~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~--evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~  267 (376)
T 2aja_A          202 FRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEK--YVNPFIARHVNR-LKEMH----DAFKLSNPDGVF  267 (376)
T ss_dssp             HHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTT--THHHHHHHHHHH-HHHHH----TTTTTTSSSSCC
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCH--HHHHHHHhcCcc-ccccc----HHHHHHHHCCCh
Confidence            99999 99999999999997742       78999999999999  999999988765 44433    366677777744


Q ss_pred             hhhhhcc---ccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc
Q 040751          270 WINRFYG---NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS  346 (405)
Q Consensus       270 ~~~~~l~---~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  346 (405)
                      ++.....   ...+++.|+..+                    ..+..+.+++|++.+...  ..-..|.           
T Consensus       268 ~vv~~~~~~~~~~~~~~li~~~--------------------~~~~~~~~~~Ll~~~~vk--~l~~~g~-----------  314 (376)
T 2aja_A          268 DLVTKSECLQGFYMLRNLIRRN--------------------DEVLLDDIRFLLSIPGIK--ALAPTAT-----------  314 (376)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHC--------------------CGGGHHHHHHHHTSTTTG--GGSSCCS-----------
T ss_pred             hhhcHHhhhhhHHHHHHHHHcc--------------------hhhHHHHHHHHHhChhhh--hhhccCC-----------
Confidence            3221000   000222333322                    112366777777654321  1111111           


Q ss_pred             ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccCC
Q 040751          347 LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILDF  404 (405)
Q Consensus       347 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~~  404 (405)
                          ....+.||||+|++.|+.+++++|++. |   ..++..|+|++++|...+.+|+
T Consensus       315 ----~~n~~~~~L~~A~~~g~~e~v~lLl~~-~---~v~~~~~~~~~~~~~~~~~~~~  364 (376)
T 2aja_A          315 ----IPGDANELLRLALRLGNQGACALLLSI-P---SVLALTKANNYYINETGGRLDL  364 (376)
T ss_dssp             ----STTCCCHHHHHHHHHTCTTHHHHHTTS-H---HHHHSCC---------------
T ss_pred             ----CCCCccHHHHHHHHcCcHHHHHHHHcC-h---HHHHHHHHhccccccccccccH
Confidence                123567899999999999999999986 3   6788999999999999998875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=226.22  Aligned_cols=191  Identities=20%  Similarity=0.174  Sum_probs=156.0

Q ss_pred             hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccC-CCCCchhHHhhh
Q 040751           60 AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESG  138 (405)
Q Consensus        60 ~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~  138 (405)
                      ...+.+++|.|  +..++.+.++.++....  ...++..|..|.||||+|+..|+.++|++|+++|+ +           
T Consensus        73 ~~~~~~~l~~a--~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~-----------  137 (276)
T 4hbd_A           73 RLACRSDAHPE--LVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-----------  137 (276)
T ss_dssp             HHHHSTTCCHH--HHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC-----------
T ss_pred             HHHhccCCCHH--HHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-----------
Confidence            33477888888  88888888888766432  22367788888999999999999999999999887 5           


Q ss_pred             hhHHHHHhhhccCCCchHhHHHH-----hCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751          139 VGAARQMIKMTNNEKNTALHEAV-----CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV  213 (405)
Q Consensus       139 ~~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~  213 (405)
                             ++..+..|.||||+|+     ..++.+++++|++.|...+ ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus       138 -------~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~  209 (276)
T 4hbd_A          138 -------VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADV  209 (276)
T ss_dssp             -------TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             -------CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence                   4477888889999888     5577888888888887766 67778889999999999999999999999988


Q ss_pred             cccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhc
Q 040751          214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY  275 (405)
Q Consensus       214 ~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  275 (405)
                      +.+|..|.||||+|+..++.  +++++|+...+.+++.++..|.|||++|+..|+.++.+++
T Consensus       210 n~~d~~G~TpLh~A~~~g~~--~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          210 NVQDDDGSTALMCACEHGHK--EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML  269 (276)
T ss_dssp             TCCCTTSCCHHHHHHHHTCH--HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHCCCH--HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            88888899999999988888  8888888844444788888889999999988888887765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.8e-29  Score=203.76  Aligned_cols=170  Identities=23%  Similarity=0.241  Sum_probs=147.2

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      +.+|||+|  +..|+.+++++|++   ..+..++..+..|.||||+|+..|+.++|++|+++|++++             
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------   63 (172)
T 3v30_A            2 DSLSIHQL--AAQGELDQLKEHLR---KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-------------   63 (172)
T ss_dssp             --CCHHHH--HHTTCHHHHHHHHT---TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-------------
T ss_pred             chhhHHHH--HHcCCHHHHHHHHH---cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-------------
Confidence            56899999  99999999988866   4555578889999999999999999999999999998854             


Q ss_pred             HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751          143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT  222 (405)
Q Consensus       143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  222 (405)
                           ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus        64 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  137 (172)
T 3v30_A           64 -----ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT  137 (172)
T ss_dssp             -----CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             -----hhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence                 788899999999999999999999999999988 78899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCH
Q 040751          223 ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTP  259 (405)
Q Consensus       223 ~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~  259 (405)
                      ||++|+..++.  +++++|++.+.. ....+..+.||
T Consensus       138 ~l~~A~~~~~~--~~~~~L~~~~~~-~~~~~~~~~~p  171 (172)
T 3v30_A          138 PMDLAVALGYR--KVQQVIENHILK-LFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHTCH--HHHHHHHHHHHH-HSCC-------
T ss_pred             HHHHHHHhCcH--HHHHHHHHHHHH-HhcccCCCCCC
Confidence            99999999999  999999998876 45556666665

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=3.3e-29  Score=206.06  Aligned_cols=162  Identities=20%  Similarity=0.167  Sum_probs=148.2

Q ss_pred             hhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHh
Q 040751           57 LLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE  136 (405)
Q Consensus        57 ~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  136 (405)
                      +..+..|+||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+..|+.+++++|+++|++++       
T Consensus        29 n~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------   95 (192)
T 2rfm_A           29 NYRDSYNRTPLMVA--CMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-------   95 (192)
T ss_dssp             TCCCTTCCCHHHHH--HHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-------
T ss_pred             hCcCCCCCCHHHHH--HHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-------
Confidence            36777899999999  999999999999884    45677888899999999999999999999999998854       


Q ss_pred             hhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751          137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE  216 (405)
Q Consensus       137 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~  216 (405)
                                 ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus        96 -----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  163 (192)
T 2rfm_A           96 -----------TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISAR  163 (192)
T ss_dssp             -----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred             -----------CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence                       788899999999999999999999999999988 78889999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          217 GPNGKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       217 ~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      +..|.|||++|+..++.  +++++|++.+
T Consensus       164 ~~~g~t~l~~A~~~~~~--~~v~~Ll~~~  190 (192)
T 2rfm_A          164 DLTGLTAEASARIFGRQ--EVIKIFTEVR  190 (192)
T ss_dssp             CTTSCBHHHHHHHTTCH--HHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCcH--HHHHHHHhcc
Confidence            99999999999999999  9999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.8e-29  Score=206.48  Aligned_cols=163  Identities=26%  Similarity=0.263  Sum_probs=151.6

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751           95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK  174 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  174 (405)
                      ++..|..|.||||+|+..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|++
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   89 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------------EDKDIEGSTALIWAVKNNRLGIAEKLLS   89 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------------ccccccCccHHHHHHHcCCHHHHHHHHH
Confidence            5678999999999999999999999999999875                  4788899999999999999999999999


Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc
Q 040751          175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ  254 (405)
Q Consensus       175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~  254 (405)
                      .|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.+ ++.++.
T Consensus        90 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~  165 (192)
T 2rfm_A           90 KGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS--EIVKKLLELGAD-ISARDL  165 (192)
T ss_dssp             HTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-TTCBCT
T ss_pred             CCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCC-CCCcCC
Confidence            999988 7888999999999999999999999999999999999999999999999999  999999998766 788999


Q ss_pred             CCCCHHHHHHHcChhhhhhhccccchhHHHHhhc
Q 040751          255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETD  288 (405)
Q Consensus       255 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~  288 (405)
                      .|.||+++|+..|         +.+++++|++.+
T Consensus       166 ~g~t~l~~A~~~~---------~~~~v~~Ll~~~  190 (192)
T 2rfm_A          166 TGLTAEASARIFG---------RQEVIKIFTEVR  190 (192)
T ss_dssp             TSCBHHHHHHHTT---------CHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhC---------cHHHHHHHHhcc
Confidence            9999999999998         557888888765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=7.8e-30  Score=221.77  Aligned_cols=188  Identities=22%  Similarity=0.222  Sum_probs=173.2

Q ss_pred             HHHHHHhhcCCCchhhhhHHHHHH--HhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREKIE--SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      .++|.|+..|+++.++.+++.+.+  .+..+..|.||||+|  +..|+.+++++|++   .....++..+..|.||||+|
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A--~~~g~~~~v~~Ll~---~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYS--VSHANFPVVQQLLD---SGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHH--HHTTCHHHHHHHHH---TSCCCTTCCCTTSCCHHHHG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHH--HHCCCHHHHHHHHH---CCCCcCCCCCCCCCCHHHHH
Confidence            457888999999999999999877  558888999999999  99999999999987   23338889999999999999


Q ss_pred             H-----HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC
Q 040751          110 A-----KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN  184 (405)
Q Consensus       110 ~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  184 (405)
                      +     ..++.+++++|++.|....                  ..+..|.||||+|+..|+.+++++|++.|++++ ..+
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d  213 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINA------------------KASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQD  213 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTC------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCcc------------------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCC
Confidence            9     7789999999999998754                  678889999999999999999999999999998 789


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          185 NDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       185 ~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      ..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.  +++++|++..
T Consensus       214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~~  273 (276)
T 4hbd_A          214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS--EIASMLYSRM  273 (276)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHHC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH--HHHHHHHhcc
Confidence            999999999999999999999999 8999999999999999999999999  9999999865

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=5.2e-29  Score=200.08  Aligned_cols=160  Identities=23%  Similarity=0.249  Sum_probs=148.2

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA  141 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  141 (405)
                      .|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+..|+.+++++|+++|++++            
T Consensus         2 ~~~t~L~~A--~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   63 (167)
T 3v31_A            2 ANSLSVHQL--AAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------   63 (167)
T ss_dssp             TTCCCHHHH--HHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             CCcchHHHH--HHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence            488999999  999999999999873    56688899999999999999999999999999998854            


Q ss_pred             HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                            ..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        64 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  136 (167)
T 3v31_A           64 ------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY  136 (167)
T ss_dssp             ------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                  778899999999999999999999999999988 7889999999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751          222 TALHAAAMKFDLVDTALRKLLEKKENL  248 (405)
Q Consensus       222 t~L~~a~~~~~~~~~~v~~Ll~~~~~~  248 (405)
                      |||++|+..++.  +++++|++.....
T Consensus       137 t~l~~A~~~~~~--~~~~~L~~~~~~~  161 (167)
T 3v31_A          137 NSMDLAVALGYR--SVQQVIESHLLKL  161 (167)
T ss_dssp             CHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence            999999999999  9999999887653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6.4e-30  Score=204.32  Aligned_cols=158  Identities=19%  Similarity=0.156  Sum_probs=120.4

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      +.++|+.|+..|+.++|++|++.|.+.+..+..|.||||+|  +. ++.+++++|++    .+.+++..+..|.||||+|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence            45678888888888888888887777777777788888887  66 77777777766    3566677777788888888


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCc
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKT  189 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  189 (405)
                      +..|+.+++++|+++|++++                  .++..|.||||+|+..|+.+++++|+++|++.....+..|.|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVN------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             HHcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            88888888888888877643                  667778888888888888888888888877743367777888


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC
Q 040751          190 PLYMAAESRSSDMVLALLENSTS  212 (405)
Q Consensus       190 ~L~~a~~~~~~~~v~~Ll~~g~~  212 (405)
                      |||+|+..|+.+++++|+++|++
T Consensus       140 ~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          140 ACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCC
Confidence            88888888888888888887764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=6.3e-29  Score=198.55  Aligned_cols=159  Identities=21%  Similarity=0.171  Sum_probs=146.5

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      ...||||.|+..|+.+++++|+++|.++                  +..+..|.||||+|+. |+.+++++|+++|++++
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~   64 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV------------------NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD   64 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT------------------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc------------------cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC
Confidence            4569999999999999999999999885                  4788899999999999 99999999999999988


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI  260 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  260 (405)
                       ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+...++.++..|.|||
T Consensus        65 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~~g~t~l  141 (162)
T 1ihb_A           65 -LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL--RVVEFLVKHTASNVGHRNHKGDTAC  141 (162)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             -CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHccCCCCCCcCCCCCcHH
Confidence             7889999999999999999999999999999999999999999999999999  9999999998876788999999999


Q ss_pred             HHHHHcChhhhhhhccccchhHHHHhhccc
Q 040751          261 HYAAYHGMYWINRFYGNYGTVNLLLETDQS  290 (405)
Q Consensus       261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~  290 (405)
                      ++|+..|         +.+++++|+++|++
T Consensus       142 ~~A~~~~---------~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          142 DLARLYG---------RNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHTT---------CHHHHHHHHHTC--
T ss_pred             HHHHHcC---------CHHHHHHHHHhCCC
Confidence            9999998         55788999988764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.6e-32  Score=227.11  Aligned_cols=198  Identities=20%  Similarity=0.182  Sum_probs=166.2

Q ss_pred             ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751           94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus        94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      ..+..+..+.||||.|+..|+.++|++|+++|++++                  ..+..|.||||+|+..|+.+++++|+
T Consensus        13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A           13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS------------------QPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            344566678899999999999999999999998854                  78889999999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHH--HhcCCccHHHHHHHHHhhhhhhh
Q 040751          174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAA--AMKFDLVDTALRKLLEKKENLIK  250 (405)
Q Consensus       174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a--~~~~~~~~~~v~~Ll~~~~~~~~  250 (405)
                      +.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..++.  +++++|++.+.+ ++
T Consensus        75 ~~ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~--~~v~~Ll~~ga~-~~  150 (229)
T 2vge_A           75 TAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA--DCATYLADVEQS-MG  150 (229)
T ss_dssp             HTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH--HHHHHHHHHHHH-TT
T ss_pred             HCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH--HHHHHHHHcCCC-cc
Confidence            9999988 788899999999999999999999999999999886 6899999999  888888  999999998876 77


Q ss_pred             hcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHH-HHhcCCc
Q 040751          251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDA-IISKNPE  325 (405)
Q Consensus       251 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~-Ll~~~~~  325 (405)
                      ..+..+.|+++.++...            ..++|++.+.+......+..|+||||+|+..|+.++|+. +++..+.
T Consensus       151 ~~~~~~~~~l~~~~~~~------------~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~  214 (229)
T 2vge_A          151 LMNSGAVYALWDYSAEF------------GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR  214 (229)
T ss_dssp             TSGGGEEEESSCBCCSS------------TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCC
T ss_pred             cccCCchHHHHHHhhcc------------ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCC
Confidence            78888888887655443            456777888775444455589999999999999888875 3444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.4e-29  Score=204.49  Aligned_cols=167  Identities=19%  Similarity=0.145  Sum_probs=149.0

Q ss_pred             HHHHHHhhcCCCchhhhhHHHHHH-HhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREKIE-SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      .|||.|+..|+++.|++|++.+.+ .+..+..|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLEW----GADPHILAKERESALSLAS   77 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHHH
Confidence            469999999999999999999876 457788899999999  999999999999873    6778889999999999999


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP  190 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  190 (405)
                      ..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||
T Consensus        78 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~  138 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVDI------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTP  138 (172)
T ss_dssp             HTTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HCCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCH
Confidence            999999999999999885                  4788999999999999999999999999999988 788999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 040751          191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTA  223 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  223 (405)
                      ||+|+..|+.+++++|+++|+++...+..+.||
T Consensus       139 l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          139 MDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            999999999999999999999988888777776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=3.2e-29  Score=201.64  Aligned_cols=155  Identities=24%  Similarity=0.258  Sum_probs=108.2

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA  141 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  141 (405)
                      .+.++|++|  +..|+.+++++|++    .+.+++..+..|.||||+|+..|+.+++++|+++|++++            
T Consensus        13 ~~~~~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   74 (169)
T 2y1l_E           13 DLGKKLLEA--ARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN------------   74 (169)
T ss_dssp             CHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             cccchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence            356667777  66677666666665    245566666677777777777777777777777776633            


Q ss_pred             HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                            ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        75 ------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  147 (169)
T 2y1l_E           75 ------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK  147 (169)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                  566667777777777777777777777777766 5666677777777777777777777777777777777777


Q ss_pred             cHHHHHHhcCCccHHHHHHHHH
Q 040751          222 TALHAAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       222 t~L~~a~~~~~~~~~~v~~Ll~  243 (405)
                      |||+.|+..++.  +++++|++
T Consensus       148 t~l~~A~~~~~~--~~~~~L~~  167 (169)
T 2y1l_E          148 TAFDISIDNGNE--DLAEILQK  167 (169)
T ss_dssp             CHHHHHHHTTCH--HHHHHHHT
T ss_pred             CHHHHHHHhCCH--HHHHHHHH
Confidence            777777777776  77776664

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.5e-28  Score=196.35  Aligned_cols=155  Identities=23%  Similarity=0.280  Sum_probs=111.3

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      .++|+.|++.|+.++|++|++.|.+.+..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA--AFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence            4567777777777777777777777766666777777777  77777777777766    35556666777777777777


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP  190 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  190 (405)
                      ..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~  149 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVN------------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTA  149 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HcCCHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence            7777777777777776643                  566677777777777777777777777777766 566777777


Q ss_pred             HHHHHHcCCHHHHHHHHHcC
Q 040751          191 LYMAAESRSSDMVLALLENS  210 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g  210 (405)
                      |++|+..|+.+++++|+++|
T Consensus       150 l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          150 FDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHhCCHHHHHHHHHcC
Confidence            77777777777777777654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.8e-28  Score=195.79  Aligned_cols=160  Identities=20%  Similarity=0.209  Sum_probs=148.1

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      .|.||||.|+..|+.+++++|++.+.++                  +..+..|.||||+|+..|+.+++++|++.|++++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~   63 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI------------------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ   63 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            5789999999999999999999999874                  4788999999999999999999999999999988


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI  260 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  260 (405)
                       ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.+ ++.++..|.||+
T Consensus        64 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~l  139 (167)
T 3v31_A           64 -LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV--KCVKMLLESGAD-PTIETDSGYNSM  139 (167)
T ss_dssp             -CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             -CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CCCcCCCCCCHH
Confidence             7889999999999999999999999999999999999999999999999999  999999998766 788899999999


Q ss_pred             HHHHHcChhhhhhhccccchhHHHHhhcccc
Q 040751          261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSA  291 (405)
Q Consensus       261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~  291 (405)
                      ++|+..|         +.+++++|++++...
T Consensus       140 ~~A~~~~---------~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          140 DLAVALG---------YRSVQQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHT---------CHHHHHHHHHHHHHH
T ss_pred             HHHHHcC---------cHHHHHHHHHHHHHH
Confidence            9999998         557888888877654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=7.2e-32  Score=242.64  Aligned_cols=260  Identities=13%  Similarity=0.059  Sum_probs=176.2

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHh---hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcc---cccccCCCCh
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESL---LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSL---LLQVNAKGDT  104 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~---~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~g~t  104 (405)
                      .+|||.|++.|+.++|++|++.|....   ..+..|.||||+|  +..|+.+++++|++.    +.+   .+..+.. .|
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~T  165 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQAEN-YH  165 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHSHHH-HH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccccCCCC-CC
Confidence            489999999999999999999987221   2334588999999  999999999999872    321   1222222 89


Q ss_pred             HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH-hCCCHHHHHHHHhcCCCCcccc
Q 040751          105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV-CHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      |||+|+..|+.++|++|+++|++++                .+..+..|.||||+|+ ..|+.+++++|++.|+      
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~----------------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------  223 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEA----------------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------  223 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGH----------------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccc----------------hhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------
Confidence            9999999999999999999998743                1126677899999999 9999999999998663      


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHH------------HHHHHhhhhhhhh
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAL------------RKLLEKKENLIKE  251 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v------------~~Ll~~~~~~~~~  251 (405)
                        .|.|||++|+..|+.+++++|+++|++++..+    ++++.|+..|+.  +++            +.|+..+.     
T Consensus       224 --~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~--~vv~~~~~~~~~~~~~~li~~~~-----  290 (376)
T 2aja_A          224 --MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVF--DLVTKSECLQGFYMLRNLIRRND-----  290 (376)
T ss_dssp             --HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCC--CCSSHHHHHHHHHHHHHHHHHCC-----
T ss_pred             --ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCCh--hhhcHHhhhhhHHHHHHHHHcch-----
Confidence              27899999999999999999999998876654    467788888876  433            22222110     


Q ss_pred             cccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 040751          252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD  331 (405)
Q Consensus       252 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  331 (405)
                                    .+..+..+++.+.+.++.+...+.+.      ..+.||||+|+..|+.+++++|++.+.       
T Consensus       291 --------------~~~~~~~~~Ll~~~~vk~l~~~g~~~------n~~~~~L~~A~~~g~~e~v~lLl~~~~-------  343 (376)
T 2aja_A          291 --------------EVLLDDIRFLLSIPGIKALAPTATIP------GDANELLRLALRLGNQGACALLLSIPS-------  343 (376)
T ss_dssp             --------------GGGHHHHHHHHTSTTTGGGSSCCSST------TCCCHHHHHHHHHTCTTHHHHHTTSHH-------
T ss_pred             --------------hhHHHHHHHHHhChhhhhhhccCCCC------CCccHHHHHHHHcCcHHHHHHHHcChH-------
Confidence                          11122334444445566665555544      256689999999999999999998642       


Q ss_pred             CCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751          332 NRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN  377 (405)
Q Consensus       332 ~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~  377 (405)
                                        .++..+.|++.+|-+.|..++.+.-+..
T Consensus       344 ------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          344 ------------------VLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             ------------------HHHSCC----------------------
T ss_pred             ------------------HHHHHHHhccccccccccccHHHHHHHH
Confidence                              2345677788888888888777765543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=7.1e-28  Score=190.39  Aligned_cols=151  Identities=19%  Similarity=0.217  Sum_probs=110.2

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      ..++||.|  +..|+.+++++|++.    +..++ .+..|.||||+|+..|+.+++++|+++|++++             
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~Ll~~----g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------------   61 (153)
T 1awc_B            2 LGKKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-------------   61 (153)
T ss_dssp             HHHHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-------------
T ss_pred             ccHHHHHH--HHcCCHHHHHHHHHc----CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------------
Confidence            34677777  777777777777662    22222 46667777777777777777777777777643             


Q ss_pred             HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751          143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT  222 (405)
Q Consensus       143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  222 (405)
                           ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus        62 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  135 (153)
T 1awc_B           62 -----ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT  135 (153)
T ss_dssp             -----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             -----CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence                 666777777777777777777777777777776 56777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCccHHHHHHH
Q 040751          223 ALHAAAMKFDLVDTALRKL  241 (405)
Q Consensus       223 ~L~~a~~~~~~~~~~v~~L  241 (405)
                      ||++|+..++.  +++++|
T Consensus       136 ~l~~A~~~~~~--~i~~~L  152 (153)
T 1awc_B          136 AFDISIDNGNE--DLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCH--HHHHHH
T ss_pred             HHHHHHHcCCH--HHHHHh
Confidence            77777777777  776654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=2.8e-28  Score=195.39  Aligned_cols=159  Identities=18%  Similarity=0.184  Sum_probs=141.0

Q ss_pred             hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhh
Q 040751           60 AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV  139 (405)
Q Consensus        60 ~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~  139 (405)
                      +..|.+|||.|  +..|+.+++++|++   ..+..+...+..|.||||+|+..|+.+++++|+++|++++          
T Consensus         5 ~~~~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----------   69 (165)
T 3twr_A            5 NSEADRQLLEA--AKAGDVETVKKLCT---VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH----------   69 (165)
T ss_dssp             -CHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred             cchhhHHHHHH--HHhCCHHHHHHHHH---cCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC----------
Confidence            45688999999  99999999988865   3456677788889999999999999999999999998854          


Q ss_pred             hHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 040751          140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN  219 (405)
Q Consensus       140 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~  219 (405)
                              ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus        70 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  140 (165)
T 3twr_A           70 --------AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD  140 (165)
T ss_dssp             --------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             --------ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence                    788899999999999999999999999999988 78889999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          220 GKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       220 ~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      |.|||++|+. ++.  +++++|+..+
T Consensus       141 g~t~l~~a~~-~~~--~i~~~L~~~g  163 (165)
T 3twr_A          141 GNTPLDLVKD-GDT--DIQDLLRGDA  163 (165)
T ss_dssp             SCCTGGGSCT-TCH--HHHHHHHTC-
T ss_pred             CCChhHhHhc-CCh--HHHHHHhhcc
Confidence            9999999776 777  8998888654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.2e-30  Score=217.48  Aligned_cols=196  Identities=16%  Similarity=0.119  Sum_probs=137.5

Q ss_pred             HHHHHhcCCCCcc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751          169 VKILTKEDPDYRY--SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE  246 (405)
Q Consensus       169 ~~~Ll~~~~~~~~--~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~  246 (405)
                      ++.|+++|++++.  ..+..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~--~~v~~Ll~~ga   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY--SIVDFLITAGA   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCC
Confidence            3567777766542  2344667778888888888888888888888888888888888888888888  88888888765


Q ss_pred             hhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHH--HhcCCHHHHHHHHhcCC
Q 040751          247 NLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLA--AGQGNAEIVDAIISKNP  324 (405)
Q Consensus       247 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A--~~~~~~~~v~~Ll~~~~  324 (405)
                      + ++.++..|.||||+|+..|         +.+++++|++.+.++ +...+..|.||||+|  +..++.+++++|+++|+
T Consensus        79 ~-~n~~d~~g~tpLh~A~~~g---------~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga  147 (229)
T 2vge_A           79 N-VNSPDSHGWTPLHCAASCN---------DTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQ  147 (229)
T ss_dssp             C-TTCCCTTCCCHHHHHHHTT---------CHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH
T ss_pred             C-CCCCCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC
Confidence            5 6778888888888888887         557888888888877 333334888999999  88999999999999888


Q ss_pred             cccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccc--cccccCCCCchhhhhhccccc
Q 040751          325 ECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVN--YDAVNKQNVSVEHILDYEHIL  402 (405)
Q Consensus       325 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d--~~~~~~~g~t~l~~a~~~~~~  402 (405)
                      ++ +..+..|.++++                     .++..+   ..++|++. |++  ++.+|..|+|||++|++.+..
T Consensus       148 ~~-~~~~~~~~~~l~---------------------~~~~~~---~~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~  201 (229)
T 2vge_A          148 SM-GLMNSGAVYALW---------------------DYSAEF---GDELSFRE-GESVTVLRRDGPEETDWWWAALHGQE  201 (229)
T ss_dssp             HT-TTSGGGEEEESS---------------------CBCCSS---TTBCCBCT-TCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred             Cc-ccccCCchHHHH---------------------HHhhcc---ccccCccc-cccccccccCCCcccHHHHHHHcCCc
Confidence            75 444444444443                     222222   12455555 666  566777788888887777765


Q ss_pred             C
Q 040751          403 D  403 (405)
Q Consensus       403 ~  403 (405)
                      +
T Consensus       202 ~  202 (229)
T 2vge_A          202 G  202 (229)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=6.5e-28  Score=195.92  Aligned_cols=160  Identities=23%  Similarity=0.253  Sum_probs=137.4

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA  141 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  141 (405)
                      ++.++||.|  +..|+.+++++|++   ..+..++..+..|.||||+|+..|+.+++++|+++|++++            
T Consensus         4 ~~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------   66 (179)
T 3f6q_A            4 EFMDDIFTQ--CREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------------   66 (179)
T ss_dssp             ---CCHHHH--HHHTCHHHHHHHHH---CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             HHHHHHHHH--HHcCCHHHHHHHHh---cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------
Confidence            478889999  88999888888866   4466778888889999999999999999999999988754            


Q ss_pred             HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                            ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        67 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  139 (179)
T 3f6q_A           67 ------VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE  139 (179)
T ss_dssp             ------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred             ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCC
Confidence                  778889999999999999999999999999887 7788899999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751          222 TALHAAAMKFDLVDTALRKLLEKKEN  247 (405)
Q Consensus       222 t~L~~a~~~~~~~~~~v~~Ll~~~~~  247 (405)
                      |||+.|+..++.  +++++|++.+.+
T Consensus       140 tpl~~A~~~~~~--~~~~~L~~~g~~  163 (179)
T 3f6q_A          140 MPVDKAKAPLRE--LLRERAEKMGQN  163 (179)
T ss_dssp             CGGGGSCHHHHH--HHHHHHHHTTCC
T ss_pred             CcHHHHHHHHHH--HHHHHHHHhhcC
Confidence            999999888888  888888887765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2e-27  Score=187.80  Aligned_cols=149  Identities=19%  Similarity=0.185  Sum_probs=137.6

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751          102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY  181 (405)
Q Consensus       102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  181 (405)
                      ..|||+.|+..|+.+++++|+++|.+..                   .+..|.||||+|+..|+.+++++|++.|++++ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-   61 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-------------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-   61 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-------------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            3589999999999999999999998753                   57789999999999999999999999999988 


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751          182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH  261 (405)
Q Consensus       182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  261 (405)
                      ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.+ ++.++..|.||++
T Consensus        62 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~~g~t~l~  138 (153)
T 1awc_B           62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ--EVVELLIKYGAD-VHTQSKFCKTAFD  138 (153)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-ccccCCCCCCHHH
Confidence            7888999999999999999999999999999999999999999999999999  999999998766 7888999999999


Q ss_pred             HHHHcChhhhhh
Q 040751          262 YAAYHGMYWINR  273 (405)
Q Consensus       262 ~a~~~~~~~~~~  273 (405)
                      +|+..|+.++.+
T Consensus       139 ~A~~~~~~~i~~  150 (153)
T 1awc_B          139 ISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            999999654443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.3e-28  Score=198.56  Aligned_cols=167  Identities=19%  Similarity=0.156  Sum_probs=151.0

Q ss_pred             cCCHHHHHHhhcCCCchhhhhHHHH-HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751           29 QMDPKFFKAAADGNVEPFKDMAREK-IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH  107 (405)
Q Consensus        29 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  107 (405)
                      +..++|+.|+..|+.+.|++|++.+ .+.+..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~   77 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIM----RGARINVMNRGDDTPLH   77 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHH
Confidence            3456799999999999999999984 55667888899999999  99999999999987    47788899999999999


Q ss_pred             HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCC
Q 040751          108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG  187 (405)
Q Consensus       108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  187 (405)
                      +|+..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus        78 ~A~~~~~~~~v~~Ll~~g~~~~------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g  138 (179)
T 3f6q_A           78 LAASHGHRDIVQKLLQYKADIN------------------AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYG  138 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTS
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCC
Confidence            9999999999999999999854                  788999999999999999999999999999988 789999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Q 040751          188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNG  220 (405)
Q Consensus       188 ~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~  220 (405)
                      .|||++|+..++.+++++|+++|++++..+..+
T Consensus       139 ~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          139 EMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            999999999999999999999999998765443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.1e-27  Score=188.44  Aligned_cols=153  Identities=18%  Similarity=0.213  Sum_probs=121.4

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      +.||||+|  +..|+.+++++|++.   .+..++..+..|.||||+ +..|+.+++++|+++|++++             
T Consensus         2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-------------   62 (156)
T 1bd8_A            2 AGDRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-------------   62 (156)
T ss_dssp             HHHHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-------------
T ss_pred             cchHHHHH--HHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-------------
Confidence            56788888  888888888887662   344667777788888888 77888888888888887743             


Q ss_pred             HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751          143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT  222 (405)
Q Consensus       143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  222 (405)
                           ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++ ++++.++..|.|
T Consensus        63 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t  135 (156)
T 1bd8_A           63 -----VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT  135 (156)
T ss_dssp             -----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred             -----CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC
Confidence                 677778888888888888888888888888876 6777888888888888888888888887 888888888888


Q ss_pred             HHHHHHhcCCccHHHHHHHHH
Q 040751          223 ALHAAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       223 ~L~~a~~~~~~~~~~v~~Ll~  243 (405)
                      ||++|+..++.  +++++|++
T Consensus       136 ~l~~A~~~~~~--~~v~~Ll~  154 (156)
T 1bd8_A          136 PLELALQRGAQ--DLVDILQG  154 (156)
T ss_dssp             HHHHHHHSCCH--HHHHHHHT
T ss_pred             HHHHHHHcCcH--HHHHHHHh
Confidence            88888888888  88887765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4.8e-27  Score=186.33  Aligned_cols=154  Identities=22%  Similarity=0.234  Sum_probs=139.6

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751          102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY  181 (405)
Q Consensus       102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  181 (405)
                      +.||||.|+..|+.+++++|+++ ...+                ++..+..|.||||+ +..|+.+++++|++.|++++ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~----------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-   62 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVH----------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-   62 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCC----------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcC----------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-
Confidence            46899999999999999999999 3111                45788899999999 99999999999999999988 


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751          182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH  261 (405)
Q Consensus       182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  261 (405)
                      ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.  .+++.++..|.|||+
T Consensus        63 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~--~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT--AVVSFLAAE--SDLHRRDARGLTPLE  138 (156)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH--HHHHHHHTT--SCTTCCCTTSCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChH--HHHHHHHhc--cCCCCcCCCCCCHHH
Confidence            7889999999999999999999999999999999999999999999999999  999999988  447889999999999


Q ss_pred             HHHHcChhhhhhhccccchhHHHHhh
Q 040751          262 YAAYHGMYWINRFYGNYGTVNLLLET  287 (405)
Q Consensus       262 ~a~~~~~~~~~~~l~~~~~~~~Ll~~  287 (405)
                      +|+..|         +.+++++|+++
T Consensus       139 ~A~~~~---------~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRG---------AQDLVDILQGH  155 (156)
T ss_dssp             HHHHSC---------CHHHHHHHHTT
T ss_pred             HHHHcC---------cHHHHHHHHhh
Confidence            999998         44677777654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1.5e-27  Score=191.18  Aligned_cols=161  Identities=24%  Similarity=0.241  Sum_probs=142.3

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751           98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP  177 (405)
Q Consensus        98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  177 (405)
                      .+..|.||||.|+..|+.+++++|++.+...                 ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   66 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA   66 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----------------ccccccCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            3567889999999999999999999865432                 34567789999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751          178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW  257 (405)
Q Consensus       178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  257 (405)
                      +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.+ ++.++..|.
T Consensus        67 ~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~~g~  142 (165)
T 3twr_A           67 DVH-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY--EICKLLLQHGAD-PTKKNRDGN  142 (165)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSC
T ss_pred             CCC-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CcccCCCCC
Confidence            988 7888999999999999999999999999999999999999999999999999  999999998766 788999999


Q ss_pred             CHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751          258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ  289 (405)
Q Consensus       258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~  289 (405)
                      ||+++|+. +         +.+++++|++.++
T Consensus       143 t~l~~a~~-~---------~~~i~~~L~~~gA  164 (165)
T 3twr_A          143 TPLDLVKD-G---------DTDIQDLLRGDAA  164 (165)
T ss_dssp             CTGGGSCT-T---------CHHHHHHHHTC--
T ss_pred             ChhHhHhc-C---------ChHHHHHHhhccc
Confidence            99999876 5         4468888887764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.1e-27  Score=203.95  Aligned_cols=177  Identities=20%  Similarity=0.133  Sum_probs=127.1

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA  141 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  141 (405)
                      .|.||||.|  +..+..+.++.|++.    +..++. +..|.||||.|+..|+.++|++|+++|++++            
T Consensus         4 ~g~t~L~~a--~~~~~~~~~~~ll~~----g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------   64 (239)
T 1ycs_B            4 TGQVSLPPG--KRTNLRKTGSERIAH----GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS------------   64 (239)
T ss_dssp             ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC------------
T ss_pred             cccccCchh--hhhhhHHHHHHHhcc----CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence            489999999  889999999988773    444543 4678999999999999999999999998754            


Q ss_pred             HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751          142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK  221 (405)
Q Consensus       142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~  221 (405)
                            ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus        65 ------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~  137 (239)
T 1ycs_B           65 ------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM  137 (239)
T ss_dssp             ------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence                  788899999999999999999999999999988 7888999999999999999999999999999999888776


Q ss_pred             -cHHHHH--HhcCCccHHHHHHHHHhhhhhhhhc---------ccCCCCHHHHHHHcC
Q 040751          222 -TALHAA--AMKFDLVDTALRKLLEKKENLIKET---------DQYGWTPIHYAAYHG  267 (405)
Q Consensus       222 -t~L~~a--~~~~~~~~~~v~~Ll~~~~~~~~~~---------~~~~~t~l~~a~~~~  267 (405)
                       ||||.|  +..++.  +++++|+..+.. ++..         +..+.++++++...|
T Consensus       138 ~t~l~~a~~~~~g~~--~~~~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          138 QTAADKCEEMEEGYT--QCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             CCHHHHCCSSSTTCC--CHHHHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             cchHHHHHHhhhccH--HHHHHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCC
Confidence             999999  777888  999999988765 3333         556788888877776

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=6.4e-28  Score=205.29  Aligned_cols=178  Identities=17%  Similarity=0.035  Sum_probs=130.5

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      -.+|||.|++.|+.+.++.|+++|.+.+.. ..|.||||+|  +..|+.+++++|++    .+.+++..|..|.||||+|
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNA   77 (239)
T ss_dssp             ---------------------------------CHHHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence            356899999999999999999999888755 4599999999  99999999999976    4668899999999999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCC-
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK-  188 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-  188 (405)
                      +..|+.+++++|+++|+++                  +..|..|.||||+|+..|+.+++++|+++|++++ ..+..|. 
T Consensus        78 ~~~g~~~~v~~Ll~~ga~~------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~  138 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQFGVNV------------------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQ  138 (239)
T ss_dssp             HHHTCHHHHHHHHHHTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCC
T ss_pred             HHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCc
Confidence            9999999999999999985                  4889999999999999999999999999999998 5555555 


Q ss_pred             cHHHHH--HHcCCHHHHHHHHHcCCCCccc---------CCCCCcHHHHHHhcCCc
Q 040751          189 TPLYMA--AESRSSDMVLALLENSTSVSHE---------GPNGKTALHAAAMKFDL  233 (405)
Q Consensus       189 t~L~~a--~~~~~~~~v~~Ll~~g~~~~~~---------~~~~~t~L~~a~~~~~~  233 (405)
                      ||||+|  +..|+.+++++|+++|++++..         +..+.++++.+...|..
T Consensus       139 t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~  194 (239)
T 1ycs_B          139 TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC  194 (239)
T ss_dssp             CHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred             chHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence            999999  7889999999999999888765         55677888888777765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=4.6e-26  Score=176.06  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=124.4

Q ss_pred             CcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHH
Q 040751           92 PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKI  171 (405)
Q Consensus        92 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  171 (405)
                      +..++..+..|.||||+|+..|+.+++++|+++|++++                  ..+..|.||||+|+. ++.+++++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~-~~~~~v~~   62 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN------------------ALNRFGRRPIQVMMM-GSAQVAEL   62 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTCCTTTTTSTT-SCHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC------------------CcCCCCCCHHHHHHc-CCHHHHHH
Confidence            34678889999999999999999999999999998854                  788999999999999 99999999


Q ss_pred             HHhcCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751          172 LTKEDPDYRYSANND-GKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE  246 (405)
Q Consensus       172 Ll~~~~~~~~~~~~~-g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~  246 (405)
                      |+++|++++ ..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.
T Consensus        63 Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--~~~~~Ll~~Ga  135 (136)
T 1d9s_A           63 LLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR--DIARYLHAATG  135 (136)
T ss_dssp             HHHHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH--HHHHHHHHHHC
T ss_pred             HHHCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH--HHHHHHHHcCC
Confidence            999999998 67778 99999999999999999999999999999999999999999999999  99999998764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.1e-25  Score=178.34  Aligned_cols=145  Identities=15%  Similarity=0.083  Sum_probs=112.2

Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751           96 LQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus        96 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      ...+..|.||||+|+..|+.++|++|+++|++++                  ..+..|.||||+|+ .|+.+++++|+++
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~-~~~~~~v~~Ll~~   66 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN------------------APNSYGRRPIQVMM-MGSARVAELLLLH   66 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT------------------CCCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence            4557788999999999999999999999988744                  77888999999985 8899999999999


Q ss_pred             CCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc
Q 040751          176 DPDYRYSANNDGKT-PLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ  254 (405)
Q Consensus       176 ~~~~~~~~~~~g~t-~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~  254 (405)
                      |++++ ..+..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.  +++++|++.+.+ ++.++.
T Consensus        67 g~~~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~  142 (156)
T 1bi7_B           67 GAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR--DVARYLRAAAGG-TRGSNH  142 (156)
T ss_dssp             TCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHSSCC---------
T ss_pred             CCCCC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH--HHHHHHHHcCCC-CCccCc
Confidence            99987 77888888 99999999999999999999999999999999999999999998  999999888766 677888


Q ss_pred             CCCCHHHHH
Q 040751          255 YGWTPIHYA  263 (405)
Q Consensus       255 ~~~t~l~~a  263 (405)
                      .|.||.+.+
T Consensus       143 ~g~t~~~~~  151 (156)
T 1bi7_B          143 ARIDAAEGP  151 (156)
T ss_dssp             ---------
T ss_pred             CcCcccccC
Confidence            888887643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=5.5e-26  Score=184.62  Aligned_cols=155  Identities=12%  Similarity=0.003  Sum_probs=131.6

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHHHHhCcH----HHHHHHHHccCCCCCchhHHhh
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVAAKFGHS----GIVTFLVERAKLPQHENEELES  137 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~  137 (405)
                      ++++|+.|  +..|+.+.++.++.   ..   ++..+ ..|+||||+|+..|+.    +++++|+++|++++        
T Consensus         6 ~~~~l~~A--a~~g~~~~~~~l~~---~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn--------   69 (186)
T 3t8k_A            6 EYRTVSAA--AMLGTYEDFLELFE---KG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK--------   69 (186)
T ss_dssp             HCSSHHHH--HHHSCHHHHHHHHH---HS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS--------
T ss_pred             cccHHHHH--HHcCCHHHHHHHHh---cC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC--------
Confidence            67899999  88999887776655   22   23344 6799999999999875    58999999999865        


Q ss_pred             hhhHHHHHhhhccCCCchHhHHHHhCCC------HHHHHHHHhcCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHH
Q 040751          138 GVGAARQMIKMTNNEKNTALHEAVCHKN------VDVVKILTKEDPDYRYSANNDGK-TPLYMAAESR-----SSDMVLA  205 (405)
Q Consensus       138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~a~~~~-----~~~~v~~  205 (405)
                                .++..|.||||+|+..++      .+++++|+++|++++ .++..|. ||||+|+..+     ..+++++
T Consensus        70 ----------~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           70 ----------SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             ----------CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             ----------CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence                      888999999999999886      578999999999998 7888999 9999999844     3568999


Q ss_pred             HHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751          206 LLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE  246 (405)
Q Consensus       206 Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~  246 (405)
                      |++ +|++++.+|..|.||||+|+..+..  ++++.|.....
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~--~~v~~L~~~~~  178 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQKP--IALKMMEDYIK  178 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTTCH--HHHHHHHHHHH
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcCCH--HHHHHHHHHHH
Confidence            999 9999999999999999999999998  88888877543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.4e-26  Score=185.90  Aligned_cols=159  Identities=11%  Similarity=0.060  Sum_probs=136.9

Q ss_pred             HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhc----ccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKEREN----VSTEFVEEILEKCPSLLLQVNAKGDTPLH  107 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~g~t~L~  107 (405)
                      ++|+.|++.|+++.|+.+++.+++. ..+..|+||||+|  +..++.    +++++|++    .+.+++..+..|+||||
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHH
Confidence            4699999999999999999887543 2336699999999  887754    47777776    58899999999999999


Q ss_pred             HHHHhCc------HHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCc-hHhHHHHhCCC-----HHHHHHHHh-
Q 040751          108 VAAKFGH------SGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN-TALHEAVCHKN-----VDVVKILTK-  174 (405)
Q Consensus       108 ~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~-----~~~~~~Ll~-  174 (405)
                      +|+..|+      .+++++|+++|++++                  .+|..|. ||||+|+..+.     .+++++|++ 
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin------------------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~  142 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADIT------------------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ  142 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSS------------------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCC------------------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence            9999987      688999999999965                  8899999 99999999543     569999999 


Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751          175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE  216 (405)
Q Consensus       175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~  216 (405)
                      +|++++ .++..|.||||+|+..|+.+++++|.++..+.+.+
T Consensus       143 ~gad~~-~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          143 SGLQLL-IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             TTCCTT-CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            999998 89999999999999999999999999876544443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.1e-25  Score=178.21  Aligned_cols=144  Identities=15%  Similarity=0.168  Sum_probs=114.7

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES  137 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  137 (405)
                      ..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+ .|+.+++++|+++|++++        
T Consensus         7 ~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~--------   71 (156)
T 1bi7_B            7 SSMEPSADWLATA--AARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN--------   71 (156)
T ss_dssp             ---CCSTTHHHHH--HHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC--------
T ss_pred             CCCccchHHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC--------
Confidence            4456799999999  99999999999977    46778889999999999986 999999999999998854        


Q ss_pred             hhhHHHHHhhhccCCCch-HhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751          138 GVGAARQMIKMTNNEKNT-ALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE  216 (405)
Q Consensus       138 ~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~  216 (405)
                                .++..|.| |||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus        72 ----------~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           72 ----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             ----------CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred             ----------CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence                      78889999 9999999999999999999999988 78899999999999999999999999999999999


Q ss_pred             CCCCCcHHHHH
Q 040751          217 GPNGKTALHAA  227 (405)
Q Consensus       217 ~~~~~t~L~~a  227 (405)
                      +..|.||.+.+
T Consensus       141 ~~~g~t~~~~~  151 (156)
T 1bi7_B          141 NHARIDAAEGP  151 (156)
T ss_dssp             -----------
T ss_pred             CcCcCcccccC
Confidence            99999987643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.4e-25  Score=173.40  Aligned_cols=130  Identities=15%  Similarity=0.202  Sum_probs=118.0

Q ss_pred             hhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHh
Q 040751           57 LLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE  136 (405)
Q Consensus        57 ~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~  136 (405)
                      +..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+. |+.+++++|+++|++++       
T Consensus         6 ~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-------   71 (136)
T 1d9s_A            6 HMLGGSSDAGLATA--AARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-------   71 (136)
T ss_dssp             SCCCCCCSCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-------
T ss_pred             cCCCCCCccHHHHH--HHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-------
Confidence            35667799999999  99999999999987    367788889999999999999 99999999999998854       


Q ss_pred             hhhhHHHHHhhhccCC-CchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751          137 SGVGAARQMIKMTNNE-KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS  212 (405)
Q Consensus       137 ~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~  212 (405)
                                 .++.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++
T Consensus        72 -----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           72 -----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -----------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -----------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                       77888 9999999999999999999999999987 7888999999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=2.2e-24  Score=166.55  Aligned_cols=126  Identities=22%  Similarity=0.211  Sum_probs=116.9

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751           98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP  177 (405)
Q Consensus        98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  177 (405)
                      ....+.||||+|+..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|+++|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   71 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADV------------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGA   71 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4556789999999999999999999999885                  4788899999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHh
Q 040751          178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEK  244 (405)
Q Consensus       178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~  244 (405)
                      +++ ..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.  +++++|++.
T Consensus        72 ~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~--~~~~~Ll~~  135 (136)
T 2jab_A           72 DVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE--DLAEILQKL  135 (136)
T ss_dssp             CTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHC
T ss_pred             CCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH--HHHHHHHHc
Confidence            988 7888999999999999999999999999999999999999999999999999  999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=5.7e-24  Score=162.00  Aligned_cols=125  Identities=34%  Similarity=0.506  Sum_probs=118.2

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      +|.||||+|+..|+.+++++|+++|++++                  ..+..|.||||+|+..++.+++++|++.|++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~   62 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN   62 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC------------------CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence            58999999999999999999999998854                  778899999999999999999999999999987


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE  246 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~  246 (405)
                       ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.  +++++|++.+.
T Consensus        63 -~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~~~~Ll~~Ga  125 (126)
T 1n0r_A           63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL--EVVKLLLEAGA  125 (126)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHTC
T ss_pred             -ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH--HHHHHHHHcCC
Confidence             7888999999999999999999999999999999999999999999999999  99999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.3e-23  Score=160.06  Aligned_cols=126  Identities=28%  Similarity=0.404  Sum_probs=117.1

Q ss_pred             cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751           62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA  141 (405)
Q Consensus        62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  141 (405)
                      +|.||||+|  +..|+.+++++|++.    +..++..+..|.||||+|+..|+.+++++|+++|++++            
T Consensus         1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------   62 (126)
T 1n0r_A            1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------   62 (126)
T ss_dssp             CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred             CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc------------
Confidence            489999999  999999999999873    56678889999999999999999999999999998854            


Q ss_pred             HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751          142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS  212 (405)
Q Consensus       142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~  212 (405)
                            .++..|.||||+|+..++.+++++|+++|++++ ..+..|.|||++|+..++.+++++|+++|++
T Consensus        63 ------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           63 ------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ------ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                  788899999999999999999999999999988 7889999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=9e-24  Score=163.10  Aligned_cols=127  Identities=18%  Similarity=0.201  Sum_probs=113.5

Q ss_pred             hhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751           59 TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG  138 (405)
Q Consensus        59 ~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  138 (405)
                      ....+.||||+|  +..|+.+++++|++    .+.+++..|..|.||||+|+..|+.+++++|+++|++++         
T Consensus        10 ~~~~~~t~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------   74 (136)
T 2jab_A           10 HGSDLGKKLLEA--ARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN---------   74 (136)
T ss_dssp             --CHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred             ccccccHHHHHH--HHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence            344588999999  99999999999987    367788889999999999999999999999999998854         


Q ss_pred             hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 040751          139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS  210 (405)
Q Consensus       139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g  210 (405)
                               ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|
T Consensus        75 ---------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           75 ---------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ---------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             ---------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                     788899999999999999999999999999987 78889999999999999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=3.4e-24  Score=165.81  Aligned_cols=126  Identities=24%  Similarity=0.263  Sum_probs=113.9

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcC
Q 040751           97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKED  176 (405)
Q Consensus        97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  176 (405)
                      ..|..|.||||+|+..|+.+++++|+++|++++                  ..+..|.||||+|+..|+.+++++|+++|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   66 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN------------------VKDHAGWTPLHEACNHGHLKVVELLLQHK   66 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            578899999999999999999999999998854                  78889999999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHH
Q 040751          177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~  243 (405)
                      ++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..  +++.+|..
T Consensus        67 ~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~~l~~l~~  130 (137)
T 3c5r_A           67 ALVN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK--SLLLLPEK  130 (137)
T ss_dssp             CCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHH--HHHSCC--
T ss_pred             Cccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHH--HHHhhccc
Confidence            9988 7888999999999999999999999999999999999999999999877666  66655544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=2.2e-24  Score=183.87  Aligned_cols=170  Identities=21%  Similarity=0.171  Sum_probs=137.8

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      +.+++.++  +..|+...+..+..       .....+..|.||||+|+..|+.++|++|++ |+++              
T Consensus        15 ~~~~~l~~--~~~g~~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~--------------   70 (244)
T 3ui2_A           15 GAMEYLIE--WKDGHSPSWVPSSY-------IAADVVSEYETPWWTAARKADEQALSQLLE-DRDV--------------   70 (244)
T ss_dssp             TEEEEEEE--ESSCCCCEEEEGGG-------SCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT--------------
T ss_pred             CccHHHHH--HHcCCCcccccccc-------cccccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC--------------
Confidence            55666666  66666665544322       123345678899999999999999999999 7774              


Q ss_pred             HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751          143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT  222 (405)
Q Consensus       143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t  222 (405)
                          +..+..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus        71 ----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t  146 (244)
T 3ui2_A           71 ----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT  146 (244)
T ss_dssp             ----TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             ----CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence                4788999999999999999999999999999998444488999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751          223 ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ  289 (405)
Q Consensus       223 ~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~  289 (405)
                      |||+|+..+.                    ...+.|||++|+..|+.         +++++|++...
T Consensus       147 ~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~~---------~iv~~L~~~~~  184 (244)
T 3ui2_A          147 ALELAREILK--------------------TTPKGNPMQFGRRIGLE---------KVINVLEGQVF  184 (244)
T ss_dssp             HHHHHHHHHT--------------------TCCCSSHHHHHHHHHHH---------HHHHHHHHHHE
T ss_pred             HHHHHHHHHh--------------------ccCCCCHHHHHHHcChH---------HHHHHHHHhcc
Confidence            9999985322                    24578999999998844         57777776543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=2.9e-23  Score=168.93  Aligned_cols=142  Identities=23%  Similarity=0.237  Sum_probs=123.6

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751           98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP  177 (405)
Q Consensus        98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  177 (405)
                      .+..|.||||.|+..|+.+++++|++ |+++                  +..+..|.||||+|+..|+.+++++|+++|+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga  100 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDV------------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGA  100 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            35578899999999999999999999 7774                  4789999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751          178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW  257 (405)
Q Consensus       178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  257 (405)
                      +++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.                    ..+.
T Consensus       101 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~  160 (183)
T 3deo_A          101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------TPKG  160 (183)
T ss_dssp             CTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCC
T ss_pred             CCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------------cccc
Confidence            99843348999999999999999999999999999999999999999999864332                    3467


Q ss_pred             CHHHHHHHcChhhhhhhccccchhHHHHhh
Q 040751          258 TPIHYAAYHGMYWINRFYGNYGTVNLLLET  287 (405)
Q Consensus       258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~  287 (405)
                      ++|++++..|..         +++++|.++
T Consensus       161 ~~l~~a~~~~~~---------~i~~~L~~~  181 (183)
T 3deo_A          161 NPMQFGRRIGLE---------KVINVLEGQ  181 (183)
T ss_dssp             SHHHHHHHHHHH---------HHHHHHHTC
T ss_pred             cHHHHHHHcCHH---------HHHHHHHHh
Confidence            999999998844         566666543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=4.6e-23  Score=156.15  Aligned_cols=112  Identities=22%  Similarity=0.228  Sum_probs=102.3

Q ss_pred             cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751           99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD  178 (405)
Q Consensus        99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~  178 (405)
                      +..|.||||+|+..|+.+++++|+++|+++                  +..+..|.||||+|+..|+.+++++|++.|++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   65 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV------------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD   65 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT------------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            456789999999999999999999999874                  47888999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q 040751          179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM  229 (405)
Q Consensus       179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~  229 (405)
                      ++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|..
T Consensus        66 ~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           66 IN-APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            88 788999999999999999999999999999999999999999999943

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.3e-22  Score=164.99  Aligned_cols=140  Identities=22%  Similarity=0.260  Sum_probs=127.7

Q ss_pred             cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHH
Q 040751          150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAAA  228 (405)
Q Consensus       150 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~  228 (405)
                      +..|.||||+|+..|+.+++++|++ |.+++ ..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578999999999999999999999 98887 788999999999999999999999999999999888 88999999999


Q ss_pred             hcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHH
Q 040751          229 MKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA  308 (405)
Q Consensus       229 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~  308 (405)
                      ..++.  +++++|++.+.+ ++.++..|.||||+|+..+..                            ..+.+++++|+
T Consensus       119 ~~~~~--~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~----------------------------~~~~~~l~~a~  167 (183)
T 3deo_A          119 GYVRP--EVVEALVELGAD-IEVEDERGLTALELAREILKT----------------------------TPKGNPMQFGR  167 (183)
T ss_dssp             HTTCH--HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT----------------------------CCCCSHHHHHH
T ss_pred             hcCcH--HHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC----------------------------cccccHHHHHH
Confidence            99999  999999998766 788999999999999976411                            25679999999


Q ss_pred             hcCCHHHHHHHHhc
Q 040751          309 GQGNAEIVDAIISK  322 (405)
Q Consensus       309 ~~~~~~~v~~Ll~~  322 (405)
                      ..|..+++++|.++
T Consensus       168 ~~~~~~i~~~L~~~  181 (183)
T 3deo_A          168 RIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HcCHHHHHHHHHHh
Confidence            99999999999865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=1.5e-23  Score=162.06  Aligned_cols=133  Identities=26%  Similarity=0.350  Sum_probs=115.1

Q ss_pred             HHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCch
Q 040751           53 KIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHEN  132 (405)
Q Consensus        53 ~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~  132 (405)
                      |+++ ..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+..|+.+++++|+++|+++    
T Consensus         1 G~d~-~~~~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----   69 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIA--SIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV----   69 (137)
T ss_dssp             ---C-CCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----
T ss_pred             CCCC-CcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc----
Confidence            3455 5677799999999  99999999999987    46778889999999999999999999999999999885    


Q ss_pred             hHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 040751          133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST  211 (405)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~  211 (405)
                                    +..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..+..+++++|.+.+.
T Consensus        70 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           70 --------------NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             --------------TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             --------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence                          4788899999999999999999999999999988 789999999999999999999888876553

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=3.3e-22  Score=175.28  Aligned_cols=147  Identities=18%  Similarity=0.084  Sum_probs=123.4

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcC
Q 040751          100 AKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKED  176 (405)
Q Consensus       100 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~  176 (405)
                      ....++|+.|+..|+.+.++.|++.|++++.....            ...+..|.||||+|+..   ++.+++++|+++|
T Consensus       149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~------------~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g  216 (301)
T 2b0o_E          149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPG------------PDAQAPEELVLHLAVKVANQASLPLVDFIIQNG  216 (301)
T ss_dssp             C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEEC------------SSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS
T ss_pred             CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCC------------cccCCCCccHHHHHHHhcccCcHHHHHHHHhcC
Confidence            33557899999999999999999999886410000            01578899999999997   8999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCC
Q 040751          177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYG  256 (405)
Q Consensus       177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~  256 (405)
                      ++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.  +++++|+..+.+       .|
T Consensus       217 advn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~--~iv~~Ll~~ga~-------~g  286 (301)
T 2b0o_E          217 GHLD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK--ECEELLEQAQAG-------TF  286 (301)
T ss_dssp             SCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCH--HHHHHHHHHHHH-------TT
T ss_pred             CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHhcCC-------CC
Confidence            9998 7889999999999999999999999999999999999999999999999999  999999987764       48


Q ss_pred             CCHHHHHHHcCh
Q 040751          257 WTPIHYAAYHGM  268 (405)
Q Consensus       257 ~t~l~~a~~~~~  268 (405)
                      .||||+|+..|+
T Consensus       287 ~tpLh~A~~~g~  298 (301)
T 2b0o_E          287 AFPLHVDYSWVI  298 (301)
T ss_dssp             SSCCC-------
T ss_pred             CChhHHHHhcCC
Confidence            899999998873

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=1.7e-22  Score=172.20  Aligned_cols=143  Identities=22%  Similarity=0.254  Sum_probs=129.4

Q ss_pred             cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHH
Q 040751          150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAAA  228 (405)
Q Consensus       150 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~  228 (405)
                      +..|.||||+|+..|+.+++++|++ |++++ ..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578999999999999999999999 99887 788999999999999999999999999999999988 78999999999


Q ss_pred             hcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHH
Q 040751          229 MKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA  308 (405)
Q Consensus       229 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~  308 (405)
                      ..++.  +++++|++.+.+ ++.++..|.||||+|+..+.                            ...+.|||++|+
T Consensus       120 ~~g~~--~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~----------------------------~~~~~~~l~~a~  168 (244)
T 3ui2_A          120 GYVRP--EVVEALVELGAD-IEVEDERGLTALELAREILK----------------------------TTPKGNPMQFGR  168 (244)
T ss_dssp             HTTCH--HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT----------------------------TCCCSSHHHHHH
T ss_pred             HcCCH--HHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh----------------------------ccCCCCHHHHHH
Confidence            99999  999999998766 78899999999999986430                            026789999999


Q ss_pred             hcCCHHHHHHHHhcCCc
Q 040751          309 GQGNAEIVDAIISKNPE  325 (405)
Q Consensus       309 ~~~~~~~v~~Ll~~~~~  325 (405)
                      ..|+.+++++|++++.+
T Consensus       169 ~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          169 RIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHHHHHHHHHHHHHEE
T ss_pred             HcChHHHHHHHHHhccc
Confidence            99999999999986433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=7.4e-23  Score=172.08  Aligned_cols=130  Identities=23%  Similarity=0.173  Sum_probs=113.3

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc-
Q 040751           97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE-  175 (405)
Q Consensus        97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-  175 (405)
                      ..+..|.||||+|+..|+.++|++|+++|+++                  +..+..|.||||+|+..|+.+++++|++. 
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  129 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV------------------NGLDKAGSTALYWACHGGHKDIVEMLFTQP  129 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTST
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCC
Confidence            34677899999999999999999999999885                  47888999999999999999999999998 


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751          176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN  247 (405)
Q Consensus       176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~  247 (405)
                      |++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..+..  ++++.|+..+..
T Consensus       130 g~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--~~l~~l~~~~~~  198 (222)
T 3ehr_A          130 NIELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA--SLLKKKQGTDAV  198 (222)
T ss_dssp             TCCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHH--HHHC--------
T ss_pred             CCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHH--HHHHHHhccchh
Confidence            88887 7889999999999999999999999999999999999999999999999888  899988887654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=174.37  Aligned_cols=140  Identities=21%  Similarity=0.143  Sum_probs=119.0

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc------ccCCCChHHHHHHHh---CcHHHHHHHHHccCCCCCchh
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQ------VNAKGDTPLHVAAKF---GHSGIVTFLVERAKLPQHENE  133 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~  133 (405)
                      ..++|+.|  +..++.+.++.|++    .+.+++.      .+..|.||||+|+..   |+.+++++|+++|+++     
T Consensus       151 ~~~~L~~A--~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-----  219 (301)
T 2b0o_E          151 EPQRLWTA--ICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-----  219 (301)
T ss_dssp             CHHHHHHH--HHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-----
T ss_pred             hHHHHhhh--hhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-----
Confidence            34679999  99999998888865    3555665      588999999999997   8999999999999985     


Q ss_pred             HHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751          134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV  213 (405)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~  213 (405)
                                   +..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..|+.+++++|+++|++ 
T Consensus       220 -------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-  284 (301)
T 2b0o_E          220 -------------DAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG-  284 (301)
T ss_dssp             -------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred             -------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-
Confidence                         4789999999999999999999999999999998 7899999999999999999999999999986 


Q ss_pred             cccCCCCCcHHHHHHhcCCc
Q 040751          214 SHEGPNGKTALHAAAMKFDL  233 (405)
Q Consensus       214 ~~~~~~~~t~L~~a~~~~~~  233 (405)
                           .|.||||+|+.+|..
T Consensus       285 -----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 -----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             -----TTSSCCC--------
T ss_pred             -----CCCChhHHHHhcCCc
Confidence                 478999999988764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=2.7e-22  Score=168.60  Aligned_cols=138  Identities=19%  Similarity=0.154  Sum_probs=113.6

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHh
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELE  136 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~  136 (405)
                      ..+..|.||||+|  +..|+.+++++|++    .+..++..+..|.||||+|+..|+.++|++|+++ |++++       
T Consensus        68 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-------  134 (222)
T 3ehr_A           68 EQAESIDNPLHEA--AKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-------  134 (222)
T ss_dssp             HHEEEESCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-------
T ss_pred             ccccccccccccc--cccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-------
Confidence            5566799999999  99999999999987    4677888999999999999999999999999999 88754       


Q ss_pred             hhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751          137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE  216 (405)
Q Consensus       137 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~  216 (405)
                                 ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..++.++++.|+..|+.....
T Consensus       135 -----------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          135 -----------QQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             -----------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             -----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence                       789999999999999999999999999999998 78999999999999999999999999999988776


Q ss_pred             CCCC
Q 040751          217 GPNG  220 (405)
Q Consensus       217 ~~~~  220 (405)
                      +..+
T Consensus       203 ~~~~  206 (222)
T 3ehr_A          203 NAED  206 (222)
T ss_dssp             ----
T ss_pred             chhh
Confidence            5443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=6e-21  Score=136.63  Aligned_cols=93  Identities=33%  Similarity=0.512  Sum_probs=81.1

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      +|+||||+|+..|+.+++++|+++|+++                  +.++..|.||||+|+..|+.+++++|+++|++++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~   62 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN   62 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4789999999999999999999998874                  4788889999999999999999999999999987


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTS  212 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~  212 (405)
                       ..+..|.||||+|+..|+.+++++|+++|++
T Consensus        63 -~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             7788899999999999999999999998874

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=2.5e-21  Score=146.57  Aligned_cols=114  Identities=18%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q 040751          150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM  229 (405)
Q Consensus       150 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~  229 (405)
                      +..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            4568899999999999999999999999987 788899999999999999999999999999999999999999999999


Q ss_pred             cCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751          230 KFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG  267 (405)
Q Consensus       230 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  267 (405)
                      .++.  +++++|++.+.+ ++.++..|.||+++|...+
T Consensus        83 ~~~~--~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           83 EGHV--SCVKLLLSKGAD-KTVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HTCH--HHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHH
T ss_pred             cCCH--HHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHH
Confidence            9999  999999998766 7889999999999995543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=5.3e-21  Score=142.91  Aligned_cols=109  Identities=27%  Similarity=0.340  Sum_probs=97.7

Q ss_pred             cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcC
Q 040751           97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKED  176 (405)
Q Consensus        97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  176 (405)
                      ..|..|.||||+|+..|+.+++++|+++|++++                  ..+..|.||||+|+..++.+++++|+++|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN------------------ARSKDGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS------------------CCCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            468889999999999999999999999998854                  77889999999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHH
Q 040751          177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTAL  224 (405)
Q Consensus       177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L  224 (405)
                      ++++ ..+..|.||||+|+..++.+++++|+++|++++..+..+.+|-
T Consensus        66 ~~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           66 ADVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CCTT-CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9987 7888999999999999999999999999999999988888773

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.5e-20  Score=168.29  Aligned_cols=147  Identities=13%  Similarity=0.094  Sum_probs=117.8

Q ss_pred             cCCCChHHHHHHHh-CcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc--CCCchHhHHHHhCCCHHHHHHHHhc
Q 040751           99 NAKGDTPLHVAAKF-GHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN--NEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus        99 ~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      ...+.|+||.|+.. |+.+++++|+++|++++                  ..+  ..|.||||+|+..|+.+++++|+++
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~  257 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVN------------------WVNGGQDNATPLIQATAANSLLACEFLLQN  257 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------------ccccccCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            34566899999999 99999999999999865                  555  7899999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhh--hhhcc
Q 040751          176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL--IKETD  253 (405)
Q Consensus       176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~--~~~~~  253 (405)
                      |++++ ..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.  +++++|+..+...  ....+
T Consensus       258 Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~--~iv~lLl~~~~~~~~~~~~~  334 (368)
T 3jue_A          258 GANVN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA--DIVTLLRLAKMREAEAAQGQ  334 (368)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHC---------
T ss_pred             CCCCC-CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCH--HHHHHHHHcCCCcccccccC
Confidence            99998 7899999999999999999999999999999999999999999999999999  9999999876332  12334


Q ss_pred             cCCCCHHHHHHHc
Q 040751          254 QYGWTPIHYAAYH  266 (405)
Q Consensus       254 ~~~~t~l~~a~~~  266 (405)
                      ..+.|++..+...
T Consensus       335 ~~~~t~l~i~~~~  347 (368)
T 3jue_A          335 AGDETYLDIFRDF  347 (368)
T ss_dssp             -------------
T ss_pred             CCCCCHHHHHHHH
Confidence            5566776665543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=6.4e-20  Score=158.88  Aligned_cols=181  Identities=21%  Similarity=0.227  Sum_probs=115.1

Q ss_pred             ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCC----chhHHh--hhhhHHHHHhhh-------ccCCCchHhHHHHhCC
Q 040751           98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQH----ENEELE--SGVGAARQMIKM-------TNNEKNTALHEAVCHK  164 (405)
Q Consensus        98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~--~~~~~~~~~~~~-------~~~~g~t~L~~A~~~~  164 (405)
                      .|..+.++++.+...|+....+++.........    ......  ..+...+.....       ......++|+.|+..|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~  141 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR  141 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence            567788899999999988776666543322110    000000  000000000000       0111235778888888


Q ss_pred             CHHHHHHHHhcCCCCcc-----ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHH
Q 040751          165 NVDVVKILTKEDPDYRY-----SANNDGKTPLYMAAES---RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT  236 (405)
Q Consensus       165 ~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~  236 (405)
                      +.+.++.+++.|.+++.     ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+..|+.  +
T Consensus       142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~--~  219 (278)
T 1dcq_A          142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA--E  219 (278)
T ss_dssp             CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH--H
T ss_pred             ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH--H
Confidence            88888888888777532     2366788888888887   778888888888888888888888888888888877  7


Q ss_pred             HHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccc
Q 040751          237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS  290 (405)
Q Consensus       237 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~  290 (405)
                      +++.|++.+.+ ++.++..|.||||+|+..|         +.+++++|++.+++
T Consensus       220 ~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~---------~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          220 CLKLLLRGKAS-IEIANESGETPLDIAKRLK---------HEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCC-CCCccCCCCCHHHHHHHcC---------CHHHHHHHHHcCCC
Confidence            88777776654 5666666666666666665         33566666666543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=2e-19  Score=155.85  Aligned_cols=130  Identities=17%  Similarity=0.108  Sum_probs=117.1

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcCCCC
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKEDPDY  179 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~  179 (405)
                      .++|+.|+..|+.+.++.+++.|.+.+...            .++..+..|.||||+|+..   |+.+++++|+++|+++
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~------------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i  198 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI------------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL  198 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC------------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhc------------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc
Confidence            479999999999999999999998753110            0223477899999999999   8999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751          180 RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN  247 (405)
Q Consensus       180 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~  247 (405)
                      + ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.  ++++.|++.+..
T Consensus       199 n-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~--~~v~~Ll~~ga~  263 (278)
T 1dcq_A          199 D-KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE--HCEELLTQALSG  263 (278)
T ss_dssp             T-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHTT
T ss_pred             c-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCH--HHHHHHHHcCCC
Confidence            8 7899999999999999999999999999999999999999999999999999  999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=8.7e-20  Score=130.53  Aligned_cols=92  Identities=34%  Similarity=0.478  Sum_probs=86.6

Q ss_pred             CCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcC
Q 040751          152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKF  231 (405)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~  231 (405)
                      +|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            47899999999999999999999999998 78999999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHhhh
Q 040751          232 DLVDTALRKLLEKKE  246 (405)
Q Consensus       232 ~~~~~~v~~Ll~~~~  246 (405)
                      +.  +++++|++.+.
T Consensus        80 ~~--~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HL--EVVKLLLEAGA   92 (93)
T ss_dssp             CH--HHHHHHHHTTC
T ss_pred             CH--HHHHHHHHcCC
Confidence            99  99999998763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=5.5e-20  Score=164.71  Aligned_cols=144  Identities=17%  Similarity=0.156  Sum_probs=114.6

Q ss_pred             cccchhhHhhhhhh-hhcccHHHHHHHHHhCCccccccc--CCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751           62 TRNTILHINIISKE-RENVSTEFVEEILEKCPSLLLQVN--AKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG  138 (405)
Q Consensus        62 ~g~~~L~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  138 (405)
                      .+.++||+|  +.. ++.+++++|++    .+.+++..+  ..|.||||+|+..|+.++|++|+++|+++          
T Consensus       198 ~~~t~L~~A--a~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv----------  261 (368)
T 3jue_A          198 HPGALLFRA--SGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV----------  261 (368)
T ss_dssp             CHHHHHHHH--TSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred             CCCcHHHHH--HHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC----------
Confidence            466899999  888 99999999877    467778777  88999999999999999999999999985          


Q ss_pred             hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---Ccc
Q 040751          139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS---VSH  215 (405)
Q Consensus       139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~---~~~  215 (405)
                              +..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+..+..   ...
T Consensus       262 --------n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~  332 (368)
T 3jue_A          262 --------NQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ  332 (368)
T ss_dssp             --------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------
T ss_pred             --------CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence                    4889999999999999999999999999999998 7899999999999999999999999987733   334


Q ss_pred             cCCCCCcHHHHHHhc
Q 040751          216 EGPNGKTALHAAAMK  230 (405)
Q Consensus       216 ~~~~~~t~L~~a~~~  230 (405)
                      .+..+.|+++.+...
T Consensus       333 ~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          333 GQAGDETYLDIFRDF  347 (368)
T ss_dssp             ---------------
T ss_pred             cCCCCCCHHHHHHHH
Confidence            455667777655543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=3e-19  Score=133.29  Aligned_cols=109  Identities=24%  Similarity=0.290  Sum_probs=100.2

Q ss_pred             hccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751          148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA  227 (405)
Q Consensus       148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  227 (405)
                      .+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            468899999999999999999999999999988 7889999999999999999999999999999999999999999999


Q ss_pred             HhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751          228 AMKFDLVDTALRKLLEKKENLIKETDQYGWTPI  260 (405)
Q Consensus       228 ~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  260 (405)
                      +..++.  +++++|++.+.+ ++.++..+.+|-
T Consensus        83 ~~~~~~--~~~~~Ll~~ga~-~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHH--EIVKLLDAKGAD-VNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCH--HHHHHHHTTSSS-HHHHSCCCC---
T ss_pred             HHCCCH--HHHHHHHHcCCC-CCcCCccccccc
Confidence            999999  999999988776 788888888874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=1.1e-17  Score=123.47  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=67.0

Q ss_pred             cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751           95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK  174 (405)
Q Consensus        95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  174 (405)
                      ....+.+|.||||+|+..|+.+++++|+++|+++                  +..|..|.||||+|+..|+.+++++|++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i------------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~   78 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV------------------AAKDKNGSTPLHLAARNGHLEVVKLLLE   78 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4456677778888888888888888888777764                  3667777777777777777777777777


Q ss_pred             cCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040751          175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLAL  206 (405)
Q Consensus       175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L  206 (405)
                      +|++++ ..+..|.||||+|+..|+.+++++|
T Consensus        79 ~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           79 AGADVX-AQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence            777776 5677777777777777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=4.7e-17  Score=120.08  Aligned_cols=93  Identities=26%  Similarity=0.270  Sum_probs=84.1

Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH  225 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~  225 (405)
                      ..-.+.+|.|+||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            34567889999999999999999999999999988 77899999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccHHHHHHH
Q 040751          226 AAAMKFDLVDTALRKL  241 (405)
Q Consensus       226 ~a~~~~~~~~~~v~~L  241 (405)
                      +|+..++.  +++++|
T Consensus        96 ~A~~~~~~--~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNE--DLAEIL  109 (110)
T ss_dssp             HHHHHTCH--HHHHHH
T ss_pred             HHHHcCCH--HHHHHh
Confidence            99999998  888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	5e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-24
 Identities = 80/386 (20%), Positives = 143/386 (37%), Gaps = 50/386 (12%)

Query: 37  AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
           A+  G++   K++ +      ++     T LH+           TE  + +L+    +  
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA-----RAGHTEVAKYLLQNKAKVNA 61

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM----------- 145
           +      TPLH AA+ GH+ +V  L+E    P        + +  A +            
Sbjct: 62  K-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 146 ----IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSD 201
                     +  T LH A  +  V V ++L + D     +A  +G TPL++A    + D
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLD 179

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
           +V  LL    S      NG T LH AA +  +    + + L +           G TP+H
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV---EVARSLLQYGGSANAESVQGVTPLH 236

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
            AA  G   +     +           Q+  N+ +K   +T LHL A +G+  + D +I 
Sbjct: 237 LAAQEGHAEMVALLLSK----------QANGNLGNKS-GLTPLHLVAQEGHVPVADVLIK 285

Query: 322 KNPECYELVDNRGWNFLHYAVVTRSLI------------NEGDAMGNTPLHVLAAVRRNE 369
                 +     G+  LH A    ++             N    +G +PLH  A     +
Sbjct: 286 HGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 370 FYDVMIRNTQVNYDAVNKQNVSVEHI 395
              ++++N   + + V+    +   I
Sbjct: 345 IVTLLLKN-GASPNEVSSDGTTPLAI 369

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 1e-23
 Identities = 83/312 (26%), Positives = 125/312 (40%), Gaps = 47/312 (15%)

Query: 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH 163
           TPLHVA+  GH  IV  L++R               GA+     ++N +  T LH A   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR---------------GAS---PNVSNVKVETPLHMAARA 43

Query: 164 KNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTA 223
            + +V K L +       +   D +TPL+ AA    ++MV  LLEN+ + +     G T 
Sbjct: 44  GHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

Query: 224 LHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNL 283
           LH AA +  +          +KE       + G+TP+H AA          YG      L
Sbjct: 103 LHIAAREGHVETVLALL---EKEASQACMTKKGFTPLHVAAK---------YGKVRVAEL 150

Query: 284 LLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVV 343
           LLE D    N A K+     LH+A    N +IV  ++ +           G+  LH A  
Sbjct: 151 LLERDAHP-NAAGKNGLT-PLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAK 207

Query: 344 TRSL------------INEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVS 391
              +             N     G TPLH LAA   +     ++ + Q N +  NK  ++
Sbjct: 208 QNQVEVARSLLQYGGSANAESVQGVTPLH-LAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 392 VEHILDYEHILD 403
             H++  E  + 
Sbjct: 267 PLHLVAQEGHVP 278

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 4e-19
 Identities = 60/315 (19%), Positives = 103/315 (32%), Gaps = 34/315 (10%)

Query: 18  LLDSTGEISQSQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERE 77
           LL++    + +          A         +A  + E+     T+     +++ +K   
Sbjct: 85  LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG- 143

Query: 78  NVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENE---- 133
                  E +LE+           G TPLHVA    +  IV  L+ R   P         
Sbjct: 144 --KVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 200

Query: 134 -----------ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS 182
                      E+   +          + +  T LH A    + ++V +           
Sbjct: 201 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL-LLSKQANGNL 259

Query: 183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLL 242
            N  G TPL++ A+     +   L+++   V      G T LH A+   ++         
Sbjct: 260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 319

Query: 243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMT 302
           +   N      + G++P+H AA  G         +   V LLL+   S  N    D   T
Sbjct: 320 QADVN---AKTKLGYSPLHQAAQQG---------HTDIVTLLLKNGASP-NEVSSDGT-T 365

Query: 303 ALHLAAGQGNAEIVD 317
            L +A   G   + D
Sbjct: 366 PLAIAKRLGYISVTD 380

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 5e-15
 Identities = 54/264 (20%), Positives = 91/264 (34%), Gaps = 37/264 (14%)

Query: 37  AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
           A    N++  K +          A    T LHI     + E          L +      
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV------ARSLLQYGGSAN 225

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
             + +G TPLH+AA+ GH+ +V  L+ +                  +    + N    T 
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSK------------------QANGNLGNKSGLTP 267

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           LH      +V V  +L K       +    G TPL++A+   +  +V  LL++   V+ +
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 217 GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYG 276
              G + LH AA +       +  LL+   +   E    G TP+  A            G
Sbjct: 327 TKLGYSPLHQAAQQGHT--DIVTLLLKNGAS-PNEVSSDGTTPLAIAKRL---------G 374

Query: 277 NYGTVNLLLETDQSASNIADKDRK 300
                ++L       S +   D+ 
Sbjct: 375 YISVTDVLKVVTDETSFVLVSDKH 398

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 5e-08
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEG--- 351
           +T LH+A+  G+  IV  ++ +      + + +    LH A       V + L+      
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 352 ---DAMGNTPLHVLAAVRRNEFYDVMIRN 377
                   TPLH  A +       +++ N
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLEN 88

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 1e-20
 Identities = 57/260 (21%), Positives = 97/260 (37%), Gaps = 20/260 (7%)

Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           E N  L +AV +++VD+V+ L +   +  +     G TPL+ A +    D+V  LL +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
                  NG T    AA+   +    L      K   + E D YG+T    AA +G    
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFL---SKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 272 NRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD 331
            +F    G    L    +       K    TAL  AA +G+ E++  ++ +        D
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKG-GATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 332 NRGWNFLHYA----------VVTRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMI 375
           N G N L +A           +T  L++ G         G TPL +    +       ++
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

Query: 376 RNTQVNYDAVNKQNVSVEHI 395
               +  +  +    +   +
Sbjct: 240 EQEHIEINDTDSDGKTALLL 259

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 5e-16
 Identities = 47/289 (16%), Positives = 84/289 (29%), Gaps = 43/289 (14%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVE 123
           N +L   +     +N   + V+++LE   ++  Q    G TPLH A +     IV  L+ 
Sbjct: 6   NHLLIKAV-----QNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 124 RAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA 183
                                   +   +                +  L           
Sbjct: 61  H-------------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTS----------VSHEGPNGKTALHAAAMKFDL 233
           +  G T    AA       +  L +   +                 G TAL  AA K  +
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 234 VDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASN 293
               L+ LL++    +   D  G              ++    +   +  LL    +  N
Sbjct: 162 --EVLKILLDEMGADVNACDNMGRN------ALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 294 IADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV 342
           +  +    T L LA  + +  +V  ++ +        D+ G   L  AV
Sbjct: 214 VRGER-GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-11
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 20/131 (15%)

Query: 99  NAKGDTPLHVAAKFGHSGIVTFLVERA--------------------KLPQHENEELESG 138
              G T L  AA+ GH  ++  L++                           + E +   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESR 198
           +      + +      T L  AV  K++ +V+ L +++       ++DGKT L +A E +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 199 SSDMVLALLEN 209
              +   L + 
Sbjct: 265 LKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 37  AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
           AA  G+VE  K +  E   + + A        +       ++   E +  +L    + + 
Sbjct: 155 AAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
               +G TPL +A +  H G+V  L+E+  +                  I  T+++  TA
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-----------------INDTDSDGKTA 256

Query: 157 LHEAVCHKNVDVVKIL 172
           L  AV  K   + ++L
Sbjct: 257 LLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 61  KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTF 120
           +   T L +       E      V+ +LE+    +   ++ G T L +A +     I   
Sbjct: 217 ERGKTPLILA-----VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 121 LVER 124
           L +R
Sbjct: 272 LCKR 275

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 7e-18
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 17/265 (6%)

Query: 47  KDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPL 106
           ++M            +     +        +++  E  +       +L + V+  G+TPL
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 107 HVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNV 166
           H      +  +V  LV+      + +   ES +  A + +   NN  +      + +   
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV---NNYDSGTFEALLDYLYP 168

Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN-GKTALH 225
            ++   +       +     G T    AA+     ++  +++        G N  ++  +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 226 AAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLL 285
               +          L     N++   D  G T ++ AA           GN   V+ LL
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL---------GNISIVDALL 279

Query: 286 ETDQSAS-NIADKDRKMTALHLAAG 309
           +    A   IA+K   +  +   AG
Sbjct: 280 D--YGADPFIANKS-GLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 35/255 (13%), Positives = 82/255 (32%), Gaps = 26/255 (10%)

Query: 119 TFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNV-DVVKILTKEDP 177
              ++R   P  E +E+ + +              N           + +V         
Sbjct: 40  EAFLQRLLFP--EIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 97

Query: 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT- 236
           +     +  G TPL+      + ++V  L+++ ++  +    G++ L  A    +  D+ 
Sbjct: 98  NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 157

Query: 237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY--GTVNLLLETDQSASNI 294
               LL+     +   D    T +H+               Y    +   +   Q+    
Sbjct: 158 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQ 217

Query: 295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAM 354
           +  + K +  +   G+    I++ +  K                    +  +++N  D+ 
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKW-------------------IIANMLNAQDSN 258

Query: 355 GNTPLHVLAAVRRNE 369
           G+T L+ +AA   N 
Sbjct: 259 GDTCLN-IAARLGNI 272

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 4e-10
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 37  AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
             +  N+E  K + +     L       + L   + S    +  T   E +L+     L+
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT--FEALLDYLYPCLI 171

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
             ++   T LH           +   +      + +  +   V    + I+   NEK + 
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAK-----YYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRY--SANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
            ++    +   +++ L  +        + +++G T L +AA   +  +V ALL+      
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 215 HEGPNGKTALHAAA 228
               +G   +   A
Sbjct: 287 IANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 17/101 (16%)

Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL----- 347
           NI   +   T LH      N E+V  ++          DN G + L  AV + +      
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 348 -----------INEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377
                      +   D+M  T LH +             + 
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 199

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.2 bits (189), Expect = 3e-16
 Identities = 31/251 (12%), Positives = 67/251 (26%), Gaps = 37/251 (14%)

Query: 86  EILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM 145
            +L     ++  + A+      +AA+ GH  ++  L E                 A  ++
Sbjct: 110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL----------------APTEI 153

Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSDMV 203
           + M   E   A   A  + ++ V+  L +             +     + A      +++
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMKFDL--------VDTALRKL-----LEKKENLIK 250
             LL+    +++   +           F          +  A +        +       
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 273

Query: 251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
               Y    +       +    RF  +   +  L      A            L LA   
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL------APTATIPGDANELLRLALRL 327

Query: 311 GNAEIVDAIIS 321
           GN      ++S
Sbjct: 328 GNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 75.3 bits (184), Expect = 1e-15
 Identities = 39/331 (11%), Positives = 84/331 (25%), Gaps = 33/331 (9%)

Query: 29  QMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEIL 88
           + DP+            F+        SL+T   +  I      +K  E V         
Sbjct: 11  ENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYA 70

Query: 89  E------KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
                  +  S   +   K +    VAA  G S  +  L     L   +           
Sbjct: 71  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCL---LLTSDEI--------- 118

Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS-ANNDGKTPLYMAAESRSSD 201
              +K+   E   A   A  + ++ V+  L +  P    +    +      +AAE+    
Sbjct: 119 ---VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH 175

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
           ++  L E + + +      +                +   L     ++   + + +    
Sbjct: 176 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGE 235

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK------MTALHLAAGQGNAEI 315
                 +                L       ++  K         +  L     +   + 
Sbjct: 236 KYVNPFIARHVNRLKEMHDA-FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 294

Query: 316 VDAIIS----KNPECYELVDNRGWNFLHYAV 342
           +  ++S    K       +       L  A+
Sbjct: 295 IRFLLSIPGIKALAPTATIPGDANELLRLAL 325

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 6e-10
 Identities = 27/233 (11%), Positives = 60/233 (25%), Gaps = 29/233 (12%)

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL--- 206
           N E +  L         ++ +     +     + +      +++        +   L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 207 --------LENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT 258
                    +  +    +G   +     AA+           LL   + ++K      + 
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDA 318
               AA           G+   +N L E   +      +     A  LAA  G+  +++ 
Sbjct: 129 AFRLAAE---------NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 179

Query: 319 IISK--NPECYELVDNRGWNFLHYAV------VTRSLINEGDAMGNTPLHVLA 363
           +           +     + F   AV      V   L++    M         
Sbjct: 180 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-MLAYAEIHEF 231

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 14/133 (10%), Positives = 30/133 (22%), Gaps = 21/133 (15%)

Query: 233 LVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGT-VNLLLETDQSA 291
           L +   +  +   E  +          I       M  + +    Y    N   +   S 
Sbjct: 23  LWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSD 82

Query: 292 SNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEG 351
           ++            +AA  G +  +D +         L+                 +   
Sbjct: 83  AHKKGIK-SEVICFVAAITGCSSALDTL--------CLLLTSDEI-----------VKVI 122

Query: 352 DAMGNTPLHVLAA 364
            A       + A 
Sbjct: 123 QAENYQAFRLAAE 135

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 7e-16
 Identities = 53/239 (22%), Positives = 88/239 (36%), Gaps = 34/239 (14%)

Query: 82  EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141
           E ++E +    SL  + +    T LH A   GH+ IV FL++                  
Sbjct: 17  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL----------------- 59

Query: 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSD 201
               +   ++   + LH A      ++VK L  +      + N +G TPL+ AA     +
Sbjct: 60  -GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHE 117

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
           + + LLE   +   +     TA+H AA K +L       +L   +      D  G T   
Sbjct: 118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM---IHILLYYKASTNIQDTEGNT--- 171

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
                    +           LL+    S   I +K+ K T L +A G G   I+  ++
Sbjct: 172 ------PLHLACDEERVEEAKLLVSQGASI-YIENKEEK-TPLQVAKG-GLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 44/221 (19%), Positives = 68/221 (30%), Gaps = 48/221 (21%)

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES---------------- 197
           N  +        ++ +K     D       + D +T L+ A  +                
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 198 -----------------RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRK 240
                               ++V ALL     V+    NG T LH AA K          
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH--EIAVM 121

Query: 241 LLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRK 300
           LLE   N     D Y  T +H AA  G   +             L   ++++NI D +  
Sbjct: 122 LLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHI----------LLYYKASTNIQDTEG- 169

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA 341
            T LHLA  +   E    ++S+      + +      L  A
Sbjct: 170 NTPLHLACDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-11
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 22/161 (13%)

Query: 83  FVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
            + + L    + +  VN  G TPLH AA      I   L+E                GA 
Sbjct: 84  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG---------------GAN 128

Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
                  ++ + TA+H A    N+ ++ IL           + +G TPL++A +    + 
Sbjct: 129 ---PDAKDHYEATAMHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 203 VLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
              L+    S+  E    KT L  A     L+   L++++E
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVAKGGLGLI---LKRMVE 222

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-15
 Identities = 48/261 (18%), Positives = 78/261 (29%), Gaps = 24/261 (9%)

Query: 98  VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
           V   GDT LH+A    H   + FL+                  A  + + + N+   TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49

Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217
           H A        V+            A   G T L++A   R+      LL+   S   + 
Sbjct: 50  HLAAILGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

Query: 218 PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
            +                 A        EN  +  D+     +    Y G   ++    +
Sbjct: 109 SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

Query: 278 YGTVNLLLETDQSASNIADKDRKM-TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWN 336
                + L  D  A     +     T LHLA     A +++ ++    +        G  
Sbjct: 169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRT 227

Query: 337 FLHYAV------VTRSLINEG 351
            L  A+      + R L   G
Sbjct: 228 PLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 20/95 (21%)

Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLH 360
            TALHLA    +   +D ++  +                        ++  + +G T LH
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFS-------------------AGHEYLDLQNDLGQTALH 50

Query: 361 VLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
            LAA+         +           +   +  H+
Sbjct: 51  -LAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.1 bits (162), Expect = 4e-13
 Identities = 54/285 (18%), Positives = 99/285 (34%), Gaps = 39/285 (13%)

Query: 103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVC 162
           ++P+ +  +   S  +T  + R  +                    +      T LH    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI------------------IDPRHNRTVLHWIAS 42

Query: 163 HKNVDVVKILTKEDPDYRYSA-------NNDGKTPLYMAAESRSSDMVLALLENSTSVSH 215
           + + +  + L   +     +A       + D  TPL +A  +R   +V  L++     + 
Sbjct: 43  NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 102

Query: 216 EGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY 275
              + ++ALH AA   D           K +  I+E D+ G T +   A++         
Sbjct: 103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA 162

Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
                    ++ D +A   ++K +  TALH AA   N  IV  ++ +     +  D  G 
Sbjct: 163 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 222

Query: 336 NFLHYAV------VTRSLINEG------DAMGNTPLHVLAAVRRN 368
             +  A       V   LI +G      DA  +T   +  A   N
Sbjct: 223 TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL--AQANN 265

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 64.4 bits (155), Expect = 3e-12
 Identities = 41/242 (16%), Positives = 75/242 (30%), Gaps = 13/242 (5%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
             T LH  A    +     L+          E + +G       +   + ++NT L  AV
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEA-----KECIAAGA-----DVNAMDCDENTPLMLAV 82

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
             +   +V  L K   D      ++     + AA +R   M++ +L ++          +
Sbjct: 83  LARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAANRDFGMMVYMLNSTKLKGDIEELDR 141

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTV 281
             + A  +             +       + D  G        Y G   ++         
Sbjct: 142 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP 201

Query: 282 NLLLETDQSASNIADKDRK-MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHY 340
            +     +  SN   +D    T + LAA +G  E+V  +I +     E VD         
Sbjct: 202 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQL 260

Query: 341 AV 342
           A 
Sbjct: 261 AQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 7e-10
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
                 +  TALH A    N+ +VK L  E    +   + DGKTP+ +AA+    ++V+ 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 206 LLENSTSVSHEGPNGKTALHAAAMK--FDLVDTALRKLLEK 244
           L++   SV        TA   A      ++V      + ++
Sbjct: 240 LIQQGASVEAVDATDHTARQLAQANNHHNIV-----DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 1e-07
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 78  NVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES 137
             +   V+ ++ +  S   + +  G TP+ +AA+ G   +V +L+++             
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ------------- 243

Query: 138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK 174
             GA+   ++  +   +TA   A  + + ++V I  +
Sbjct: 244 --GAS---VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 28/228 (12%), Positives = 65/228 (28%), Gaps = 21/228 (9%)

Query: 188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFD------LVDTALRKL 241
           ++P+ +  E+  S  +   +   +    +  + +T LH  A          L+    ++ 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 242 LEKKENLIKETDQYGWTPIHYAAYHG---MYWINRFYGNYGTVNLLLETDQSASNIADKD 298
           +    + +   D    TP+  A       +       G   T+    E        A++D
Sbjct: 61  IAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 299 RKMTALHLAAGQGNAEIVD-----------AIISKNPECYELVDNRGWNFLHYAVVTRSL 347
             M    L + +   +I +              ++  +                    + 
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 348 INEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
            +     G T LH  A V        ++     N D  ++   +   +
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 227

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 25/144 (17%)

Query: 258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVD 317
           +PI               G+Y     +        NI D     T LH  A   +AE  +
Sbjct: 2   SPIKLHTEAA--------GSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSE 50

Query: 318 AIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377
            +I       +     G +           +N  D   NTPL +    RR      +++ 
Sbjct: 51  DLIVH---EAKECIAAGAD-----------VNAMDCDENTPLMLAVLARRRRLVAYLMKA 96

Query: 378 TQVNYDAVNKQNVSVEHILDYEHI 401
                     +  ++         
Sbjct: 97  GADPTIYNKSERSALHQAAANRDF 120

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 1e-12
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 49/239 (20%)

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN---- 209
           N  LH+A        V+ L    P      + DG+ PL+ +   ++ ++   LL      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 210 -------------------------------STSVSHEGPNGKTALHAAAMKFDLVDTAL 238
                                                        +    +        +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 239 RKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD 298
            + L +    ++  D++   P+H AA  G   +       G   +  +  Q         
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ--------- 171

Query: 299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV---VTRSLINEG-DA 353
              T L  A  +G+ +    ++ K    Y+LVDN+G      A+   V +  +N   DA
Sbjct: 172 -GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.5 bits (155), Expect = 1e-12
 Identities = 51/259 (19%), Positives = 86/259 (33%), Gaps = 34/259 (13%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVE 123
           N  LH               V+E+L   PSLLLQ +  G  PLH +  F    I +FL+ 
Sbjct: 1   NYPLHQAC-----MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 124 RAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA 183
           + +                       ++                V  +  +         
Sbjct: 56  KMENVNL--------------DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI 101

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
            N G T L++A   +  ++   L+EN  SV  +    +  LH AA    L    L     
Sbjct: 102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC--G 159

Query: 244 KKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA 303
             ++ +   D+ GWTP+ +A   G               LL+E   +  ++ D      A
Sbjct: 160 LGKSAVNWQDKQGWTPLFHALAEGHGDA---------AVLLVEKYGAEYDLVDNKGA-KA 209

Query: 304 LHLAAGQGNAEIVDAIISK 322
             +A    N ++    ++ 
Sbjct: 210 EDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 3e-09
 Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 7/187 (3%)

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTV 281
             LH A M+ +     +++LL  K +L+ + DQ G  P+H++     + I  F  +    
Sbjct: 2   YPLHQACMENEF--FKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 282 NLLLETDQSASNIADKDRKMTALHLAAG-----QGNAEIVDAIISKNPECYELVDNRGWN 336
             L +    +                           ++           +  V  + + 
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 337 FLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHIL 396
              + +   + +   D     PLH  A+V   +  +++    +   +  +KQ  +     
Sbjct: 120 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 397 DYEHILD 403
             E   D
Sbjct: 180 LAEGHGD 186

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.7 bits (148), Expect = 9e-12
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 20/204 (9%)

Query: 80  STEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139
           + + + ++L +   L   ++  G+T LH+AA+F  +     L++       ++    + +
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 140 GAARQ----------------MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA 183
            AA                   +    ++  T L  A       +V+ L   D D   +A
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AA 119

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
           +N GKT L+ AA   +++ V  LL +  +   +    +T L  AA +      A + LL+
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY--EASKALLD 177

Query: 244 KKENLIKETDQYGWTPIHYAAYHG 267
              N  + TD     P   A+   
Sbjct: 178 NFAN-REITDHMDRLPRDVASERL 200

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 40/220 (18%), Positives = 58/220 (26%), Gaps = 38/220 (17%)

Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE 208
            +    T+LH A      D  K L     D     N          A        + L  
Sbjct: 19  MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRN 78

Query: 209 NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGM 268
            +T+++    +G T L  AA           + L   +  I   D  G T +H+AA    
Sbjct: 79  RATNLNARMHDGTTPLILAARLAIEGM---VEDLITADADINAADNSGKTALHWAAAVNN 135

Query: 269 YWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYE 328
                    +              +  D     T L LAA +G+ E   A++        
Sbjct: 136 TEAVNILLMHHANR----------DAQDDKD-ETPLFLAAREGSYEASKALLDNFAN--- 181

Query: 329 LVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRN 368
                                  D M   P  V  A  R 
Sbjct: 182 -------------------REITDHMDRLPRDV--ASERL 200

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 20/127 (15%)

Query: 82  EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141
           E + E L    + +   +  G T LH AA   ++  V  L+                   
Sbjct: 103 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH----------------- 145

Query: 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSD 201
                   +++  T L  A    + +  K L     + R   ++  + P  +A+E    D
Sbjct: 146 -HANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHD 203

Query: 202 MVLALLE 208
           +V  LL+
Sbjct: 204 IV-RLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 21/124 (16%), Positives = 34/124 (27%), Gaps = 1/124 (0%)

Query: 238 LRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI-NRFYGNYGTVNLLLETDQSASNIAD 296
           +  LL +   L    D+ G T +H AA         R        N    T ++  + A 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 297 KDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGN 356
               M    +        +   +                  +   +   + IN  D  G 
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 357 TPLH 360
           T LH
Sbjct: 125 TALH 128

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 45/244 (18%), Positives = 80/244 (32%), Gaps = 31/244 (12%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           GDTPLH+A   G+   V  LV             + G       + + NN + T LH AV
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL---------FQQGGR-----ELDIYNNLRQTPLHLAV 48

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL---ALLENSTSVSHEGP 218
                 VV++L            +              + +     +    +  +     
Sbjct: 49  ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 108

Query: 219 NGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY 278
           +G TALH A           + LLE+  ++     + G +P+ +A  +    + +    +
Sbjct: 109 DGLTALHVAVNTECQETV--QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 166

Query: 279 GTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL 338
           G                      +ALH A+G+G   +V  ++    +   L +      L
Sbjct: 167 GANVNAQMYS-----------GSSALHSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPL 214

Query: 339 HYAV 342
             A 
Sbjct: 215 MVAR 218

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 3e-09
 Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 30/226 (13%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTF 120
           +T LHI ++       +   V  ++        +++       TPLH+A       +V  
Sbjct: 4   DTPLHIAVVQG-----NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 58

Query: 121 LVERAKLPQHENEELESGVGAARQM-------------------IKMTNNEKNTALHEAV 161
           LV     P   +   ++    A +                    ++  N +  TALH AV
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
             +  + V++L +   D        G++PL  A E+ S  MV  LL++  +V+ +  +G 
Sbjct: 119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 178

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267
           +ALH+A+ +  L    +R L+    +     + +  TP+  A    
Sbjct: 179 SALHSASGRGLL--PLVRTLVRSGAD-SSLKNCHNDTPLMVARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 8e-06
 Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 41/222 (18%)

Query: 186 DGKTPLYMAAESRSSDMVLALL----ENSTSVSHEGPNGKTALHAAAMK----------- 230
           DG TPL++A    +   V  L+    +    +       +T LH A +            
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 231 ------------FDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNY 278
                             A           + ++   G   +    Y G+  ++      
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 279 GTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL 338
               + L  ++ A   A   +   +  + A + N+  +  ++ ++          G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 339 HYAV------VTRSLINEG------DAMGNTPLHVLAAVRRN 368
           H A       + R+L+  G      +   +TPL V  A  R 
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV--ARSRR 221

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 18/88 (20%)

Query: 83  FVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
            + ++L +  + +      G + LH A+  G   +V  LV                 GA 
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS---------------GA- 201

Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVK 170
                + N   +T L  A   + +D+++
Sbjct: 202 --DSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
             +       ++ALH A     + +V+ L +   D   +   N    TPL +A   R  D
Sbjct: 168 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK---NCHNDTPLMVARSRRVID 224

Query: 202 MV 203
           ++
Sbjct: 225 IL 226

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 54/269 (20%), Positives = 92/269 (34%), Gaps = 37/269 (13%)

Query: 123 ERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYR 180
              +L +    E +      ++       +       A    + + V  L +   D +Y 
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA 69

Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRK 240
              N DG T L+ A    + DMV  L+EN  +++     G   LHAAA    L      +
Sbjct: 70  ---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI---AE 123

Query: 241 LLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-------- 292
            L  +   +   +  G TP+  A    M  + +   N   V++     +           
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183

Query: 293 --------NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV-- 342
                   ++       TALH+AA +G  E++  +I    +   + D  GW  LH A   
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHW 242

Query: 343 ----VTRSLINEG------DAMGNTPLHV 361
                 R L+         + +G T   V
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
                      TALH A      +V+K+L +   D     + DG TPL+ AA     +  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEAC 248

Query: 204 LALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLI 249
             L+EN   +      G+TA   A            + L+KK+NL+
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVADEDI----LGYLEELQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.3 bits (121), Expect = 6e-08
 Identities = 52/269 (19%), Positives = 76/269 (28%), Gaps = 55/269 (20%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
           +V          A   G +  V  L+ER               GA    I   N +  TA
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLER---------------GAD---INYANVDGLTA 76

Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
           LH+A    NVD +     E+       +N+G  PL+ AA     D+   L+     V   
Sbjct: 77  LHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 217 GPNGKTALHAAAMKFD------------------------LVDTALRKLLEKKENLIKET 252
              G T L  A  +                          ++    R+ L          
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH 195

Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
            + G T +H AA  G   + +                            T LH AA  G 
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQA-----------RYDVNIKDYDGWTPLHAAAHWGK 244

Query: 313 AEIVDAIISKNPECYELVDNRGWNFLHYA 341
            E    ++    +  E V+  G      A
Sbjct: 245 EEACRILVENLCD-MEAVNKVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243
              G T L++AA    ++++  L++    V+ +  +G T LHAAA        A R L+E
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE--EACRILVE 253

Query: 244 KKENLIKETDQYGWTPIHYAA 264
              + ++  ++ G T    A 
Sbjct: 254 NLCD-MEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 1e-06
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 19/130 (14%)

Query: 67  LHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK 126
           + I    KE E +      + L       ++    G T LHVAA  G++ ++  L++   
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-- 221

Query: 127 LPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND 186
                           R  + + + +  T LH A      +  +IL +   D   + N  
Sbjct: 222 ----------------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-AVNKV 264

Query: 187 GKTPLYMAAE 196
           G+T   +A E
Sbjct: 265 GQTAFDVADE 274

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 2e-09
 Identities = 28/235 (11%), Positives = 58/235 (24%), Gaps = 30/235 (12%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
           GD+ LH+A       +   ++ + K                   +   NN + T LH AV
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVK--------------GDLAFLNFQNNLQQTPLHLAV 47

Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
                ++ + L     D                 +   + + +     +T   H      
Sbjct: 48  ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 107

Query: 222 T----ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGN 277
                     A     +      +    +    +    G T +H A       +      
Sbjct: 108 NYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLK 166

Query: 278 YGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332
            G          +  N        +   L  G+ +  I   +     E  +++  
Sbjct: 167 CG----------ADVNRVTYQ-GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 25/200 (12%)

Query: 186 DGKTPLYMAAESRSSDMVLALLE----NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKL 241
           DG + L++A       + + ++     +   ++ +    +T LH A +            
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI------ 54

Query: 242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKM 301
              +  L    D            H                        +   A      
Sbjct: 55  --AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL------------IN 349
           T LHLA+  G   IV+ ++S   +        G   LH AV  ++             +N
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 172

Query: 350 EGDAMGNTPLHVLAAVRRNE 369
                G +P   L   R + 
Sbjct: 173 RVTYQGYSPYQ-LTWGRPST 191

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 30/215 (13%)

Query: 64  NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTF 120
           ++ LH+ II +           E++ +    L  +N +     TPLH+A       I   
Sbjct: 3   DSFLHLAIIHE-----EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

Query: 121 LVERAK---------------------LPQHENEELESGVGAARQMIKMTNNEKNTALHE 159
           L+                         L                 ++K TN   +T LH 
Sbjct: 58  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 117

Query: 160 AVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
           A  H  + +V++L     D       +G+T L++A + ++ D+V  LL+    V+     
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 220 GKTALHAAAMKFDL-VDTALRKLLEKKENLIKETD 253
           G +       +    +   L +L  +   ++ E++
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 2e-08
 Identities = 23/165 (13%), Positives = 44/165 (26%), Gaps = 19/165 (11%)

Query: 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP------NGKTALHAAAMKFDLVD 235
           +        L  A ++R    +L    +   ++ + P        +TALH A    D   
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 236 TALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIA 295
             +   L +    + +    G T +HY          +                 AS   
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK-----------ASIEI 109

Query: 296 DKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFL 338
             +   T L +A    +    + +           +     W  L
Sbjct: 110 ANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYEWRLL 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 20/145 (13%)

Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPD-----YRYSANNDGKTPLYMAAESR---SSD 201
              K  +L EAV  +++  +     +  D        + +   +T L++A  S    S  
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261
           +V  L++NS ++  +   G TALH   +  +     L    +    +    ++ G TP+ 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA---NESGETPLD 119

Query: 262 YAAYHGMYWINRFYGNYGTVNLLLE 286
            A             +     LL +
Sbjct: 120 IAKR---------LKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 18/132 (13%)

Query: 61  KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSG---I 117
             +   L   + +++   +   + + +       L   +   +T LH+A +        I
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 118 VTFLVE---------------RAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVC 162
           V FLV+                      +N E    +   +  I++ N    T L  A  
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 163 HKNVDVVKILTK 174
            K+    ++LT+
Sbjct: 124 LKHEHCEELLTQ 135

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 7e-07
 Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 16/168 (9%)

Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
              L  A    +V  V+ L   +  +  + N  GKT L +     ++  +  L + ++  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR 273
             +         AA   F      L +        +   D  G  PIH A   G   +  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 274 FYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
           F      ++             D    +T L LA  +G  ++VD +  
Sbjct: 119 FLAAESDLH-----------RRDAR-GLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 5/150 (3%)

Query: 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279
               L  AA + D+    +R+LL ++       +++G T +    +              
Sbjct: 2   AGDRLSGAAARGDV--QEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 280 TVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLH 339
           + N+   +  S  + A +   +  L +    G    V+           L    G   + 
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA--DVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 340 YAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369
             +   S ++  DA G TPL  LA  R  +
Sbjct: 118 SFLAAESDLHRRDARGLTPLE-LALQRGAQ 146

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 32/186 (17%)

Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
           +    L  AA  G    V  L+ R  +                      N    TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVH-----------------PDALNRFGKTALQVM 43

Query: 161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG 220
           +       +++L +         +               +  VL   E+   V+     G
Sbjct: 44  MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV--EHGADVNVPDGTG 101

Query: 221 KTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGT 280
              +H A  +      +        E+ +   D  G TP+  A            G    
Sbjct: 102 ALPIHLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQ---------RGAQDL 148

Query: 281 VNLLLE 286
           V++L  
Sbjct: 149 VDILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 3e-05
 Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 15/168 (8%)

Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
             L  A    +++ +  L + + +   + N  G+T L +            LL  +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRF 274
            +         AA   F              + L    +      I     +    +   
Sbjct: 62  KDRTGFAVIHDAARAGFL-------------DTLQTLLEFQADVNIEDNEGNLPLHLAAK 108

Query: 275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK 322
            G+   V  L++   S     +     TA  LA   G  E+V  + + 
Sbjct: 109 EGHLRVVEFLVKHTASNVGHRNHK-GDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 26/156 (16%), Positives = 46/156 (29%), Gaps = 3/156 (1%)

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTV 281
             L +AA + DL    L  LL+   N +   + +G T +            R        
Sbjct: 3   NELASAAARGDL--EQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANP 59

Query: 282 NLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA 341
           +L   T  +  + A +   +  L           ++      P      +          
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 342 VVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377
             T S +   +  G+T   +     RNE   +M  N
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 97  QVNAKGDTPLHVAAKFGHSGIVTFLVER 124
             N KGDT   +A  +G + +V+ +   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 4e-05
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 16/166 (9%)

Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
           +    L EA      D V+IL      +  + +  G +PL++AA+         LL    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWI 271
           S        +T LH AA +                N+++   ++G               
Sbjct: 59  SRDARTKVDRTPLHMAASEGH-------------ANIVEVLLKHGADVNAKDMLKMTALH 105

Query: 272 NRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVD 317
                N+  V  LL    +  +   K  K TA  ++   GN ++ +
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCK-TAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 13/140 (9%)

Query: 104 TPLHVAAKFGHSGIVTFLVER-------------AKLPQHENEELESGVGAARQMIKMTN 150
             L  AA+ G    V  L+                 L         + V     + +   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 151 NEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210
            + +         +    +  +  +      + +    T L+ A E    ++V  L++  
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 211 TSVSHEGPNGKTALHAAAMK 230
             V  +    KTA   +   
Sbjct: 124 ADVHTQSKFCKTAFDISIDN 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 9e-04
 Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 5/148 (3%)

Query: 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTV 281
             L  AA         +R L+         TD  G +P+H AA +G +         G  
Sbjct: 4   KKLLEAARAGQD--DEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 282 NLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA 341
                                 +     +  A++    + K    +   ++     +   
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 342 VVTRSLINEGDAMGNTPLHVLAAVRRNE 369
           +   + ++       T    ++    NE
Sbjct: 120 IKYGADVHTQSKFCKTAFD-ISIDNGNE 146

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (92), Expect = 5e-05
 Identities = 17/121 (14%), Positives = 29/121 (23%), Gaps = 18/121 (14%)

Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
            D     A K G    V   V + +      E     +  A    ++   E        +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 162 CHKNVDVVKIL--------------TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
              +   +  L                     +     DG T L        +  + ALL
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD----NQAIKALL 117

Query: 208 E 208
           +
Sbjct: 118 Q 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-50  Score=371.18  Aligned_cols=349  Identities=23%  Similarity=0.314  Sum_probs=304.6

Q ss_pred             HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK  111 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~  111 (405)
                      +|||.||..|++++|++|++.|.+++..+..|+||||+|  +..|+.+++++|++.    +.+++..+..|.||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            589999999999999999999998888889999999999  999999999999883    67789999999999999999


Q ss_pred             hCcHHHHHHHHHccCCCCCchhHHhhhhhHH---------------HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcC
Q 040751          112 FGHSGIVTFLVERAKLPQHENEELESGVGAA---------------RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKED  176 (405)
Q Consensus       112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~  176 (405)
                      .|+.+++++|+..+.+...............               .......+..+.++++.|+..++.+++++|+++|
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999998876543322211111000               1113445678899999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCC
Q 040751          177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYG  256 (405)
Q Consensus       177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~  256 (405)
                      .+++ ..+..|.+||++|+..|+.+++++|+.+|++++..+..+.||++.++.....  +....++..... ....+..+
T Consensus       156 ~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~  231 (408)
T d1n11a_         156 AHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV--EVARSLLQYGGS-ANAESVQG  231 (408)
T ss_dssp             CCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTC
T ss_pred             CCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchh--hhhhhhhhcccc-ccccCCCC
Confidence            9988 7788999999999999999999999999999999999999999999999998  888888877655 45677889


Q ss_pred             CCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCCh
Q 040751          257 WTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWN  336 (405)
Q Consensus       257 ~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  336 (405)
                      .||++.|+..+         ..++++.+.+.+... +.. +..|.||++.|+..++.+++++|+++|++. +..+..+.|
T Consensus       232 ~t~l~~a~~~~---------~~~~~~~~~~~~~~~-~~~-~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t  299 (408)
T d1n11a_         232 VTPLHLAAQEG---------HAEMVALLLSKQANG-NLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYT  299 (408)
T ss_dssp             CCHHHHHHHTT---------CHHHHHHHHTTTCCT-TCC-CTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCC
T ss_pred             CCHHHHHHHhC---------cHhHhhhhhcccccc-ccc-cCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccc
Confidence            99999999988         446777787776655 333 348899999999999999999999999987 778889999


Q ss_pred             HHHHHHHhcc------------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          337 FLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       337 ~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      ||+.++..+.            ++|.+|..|.||||+|++.|+.++|++||++ |||++.+|..|+||||+|++.++++
T Consensus       300 ~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~-GAd~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             cchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999987766            6899999999999999999999999999998 9999999999999999999998765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-41  Score=306.28  Aligned_cols=322  Identities=27%  Similarity=0.324  Sum_probs=279.9

Q ss_pred             CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHH----------------------
Q 040751           30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI----------------------   87 (405)
Q Consensus        30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~----------------------   87 (405)
                      -.+|||+|++.|+.++|++|+++|++.+..+..|.||||+|  +..|+.+++++|+..                      
T Consensus        33 g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A--~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  110 (408)
T d1n11a_          33 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA--ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREG  110 (408)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH--HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhc
Confidence            35789999999999999999999999888888999999999  999999999998763                      


Q ss_pred             -------HHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHH
Q 040751           88 -------LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA  160 (405)
Q Consensus        88 -------~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  160 (405)
                             ....+......+..+.++++.|+..++.+++++|++++++++                  ..+.+|.+||++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~------------------~~~~~~~~~L~~A  172 (408)
T d1n11a_         111 HVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN------------------AAGKNGLTPLHVA  172 (408)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCSSCCCHHHHH
T ss_pred             ccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC------------------cCCCcCchHHHHH
Confidence                   111223345567889999999999999999999999998854                  7788899999999


Q ss_pred             HhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHH
Q 040751          161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRK  240 (405)
Q Consensus       161 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~  240 (405)
                      +..|+.+++++|+++|++++ ..+..|.||+|+++.....+....++..+......+..+.|||+.|+..+..  ++++.
T Consensus       173 ~~~~~~~~~~~Ll~~g~~~~-~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~  249 (408)
T d1n11a_         173 VHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA--EMVAL  249 (408)
T ss_dssp             HHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHH
T ss_pred             HHcCCHHHHHHHHhcCCccc-ccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcH--hHhhh
Confidence            99999999999999999987 7888999999999999999999999999999988899999999999999998  99998


Q ss_pred             HHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHH
Q 040751          241 LLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII  320 (405)
Q Consensus       241 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  320 (405)
                      ++..... .+..+..|.||++.++..+         +.+++++|++.+.+.. ... ..+.||||.++..++.+++++++
T Consensus       250 ~~~~~~~-~~~~~~~g~~~l~~a~~~~---------~~~i~~~Ll~~g~~~~-~~~-~~~~t~L~~~~~~~~~~~~~~ll  317 (408)
T d1n11a_         250 LLSKQAN-GNLGNKSGLTPLHLVAQEG---------HVPVADVLIKHGVMVD-ATT-RMGYTPLHVASHYGNIKLVKFLL  317 (408)
T ss_dssp             HHTTTCC-TTCCCTTCCCHHHHHHHHT---------CHHHHHHHHHHTCCTT-CCC-SSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             hhccccc-cccccCCCCChhhhhhhcC---------cHHHHHHHHHCCCccc-ccc-ccccccchhhcccCcceeeeeec
Confidence            8876654 6778889999999999998         5578999999988763 333 37889999999999999999999


Q ss_pred             hcCCcccccccCCCChHHHHHHHhcc------------ccccccCCCCCHHHHHHHhCCcHHHHHHHhc--ccccccccc
Q 040751          321 SKNPECYELVDNRGWNFLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRN--TQVNYDAVN  386 (405)
Q Consensus       321 ~~~~~~~~~~~~~g~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~--~g~d~~~~~  386 (405)
                      +.|+++ +.+|..|.||||+|+++++            ++|.+|..|.||||+|++.|+.++|++|..-  .+.++...+
T Consensus       318 ~~g~~i-n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         318 QHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             HTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC---
T ss_pred             cccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccc
Confidence            999988 8899999999999998887            7899999999999999999999999855322  355555444


Q ss_pred             C
Q 040751          387 K  387 (405)
Q Consensus       387 ~  387 (405)
                      +
T Consensus       397 ~  397 (408)
T d1n11a_         397 K  397 (408)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.6e-38  Score=267.25  Aligned_cols=235  Identities=21%  Similarity=0.220  Sum_probs=183.6

Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751           96 LQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus        96 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      ...+.+|.||||+|+..|+.++|++|+++|+++.               .++..+..|.||||+|+..|+.+++++|+++
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~---------------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~   67 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---------------YLDLQNDLGQTALHLAAILGEASTVEKLYAA   67 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcc---------------cccCcCCCCCCccchHHhhcccccccccccc
Confidence            5678999999999999999999999999998742               2557788999999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------CCCcHHHHHH---hcCCccHHHHHHHH
Q 040751          176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP----------NGKTALHAAA---MKFDLVDTALRKLL  242 (405)
Q Consensus       176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~----------~~~t~L~~a~---~~~~~~~~~v~~Ll  242 (405)
                      |++++ ..+..|.||||+|+..++.+++++|++.+........          ...+....+.   .....  .....+.
T Consensus        68 ga~i~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  144 (255)
T d1oy3d_          68 GAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE--NEEEPRD  144 (255)
T ss_dssp             TCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------C
T ss_pred             ccccc-ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchh--HHHHHHh
Confidence            99998 7899999999999999999999999987654332111          0111111111   11111  1222222


Q ss_pred             HhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhc
Q 040751          243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK  322 (405)
Q Consensus       243 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  322 (405)
                      ......++.++..|.||||+|+..+         +.+++++|++.+..... ..+..|.||||+|++.++.+++++|+++
T Consensus       145 ~~~~~~in~~d~~g~TpLh~A~~~~---------~~~~v~~Ll~~~~~~~~-~~~~~g~TpL~~A~~~~~~~~v~~Ll~~  214 (255)
T d1oy3d_         145 EDWRLQLEAENYDGHTPLHVAVIHK---------DAEMVRLLRDAGADLNK-PEPTCGRTPLHLAVEAQAASVLELLLKA  214 (255)
T ss_dssp             CCGGGGTTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhcCcccccccccCccccccccccc---------ccccccchhcccccccc-cccccccccccccccccHHHHHHHHHHC
Confidence            2334446778899999999999988         55789999999888743 3445899999999999999999999999


Q ss_pred             CCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccc
Q 040751          323 NPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVN  381 (405)
Q Consensus       323 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d  381 (405)
                      |++                      ++.+|..|.||||+|+..++.+++++|+++ ||+
T Consensus       215 gad----------------------in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~-Ga~  250 (255)
T d1oy3d_         215 GAD----------------------PTARMYGGRTPLGSALLRPNPILARLLRAH-GAP  250 (255)
T ss_dssp             TCC----------------------TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCC
T ss_pred             CCC----------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCC
Confidence            876                      566778899999999999999999999998 996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-35  Score=252.88  Aligned_cols=269  Identities=20%  Similarity=0.223  Sum_probs=209.3

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA  141 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~  141 (405)
                      +.|+||.|  ++.|+.+++++|++    .+.+++..+ ..|.||||+|+..|+.+++++|++.+....            
T Consensus         5 ~~~~L~~A--i~~~~~e~vk~Ll~----~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~------------   66 (285)
T d1wdya_           5 DNHLLIKA--VQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV------------   66 (285)
T ss_dssp             HHHHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred             CcHHHHHH--HHcCCHHHHHHHHH----CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc------------
Confidence            66788888  88888888888766    355565443 467888888888888888888888877643            


Q ss_pred             HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-----
Q 040751          142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE-----  216 (405)
Q Consensus       142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~-----  216 (405)
                            ..+..+.+|.+.+...+..+...++++...+.. ..+..+.+++++|+..++...++.++....+++..     
T Consensus        67 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (285)
T d1wdya_          67 ------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             ------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             ------ccccccchhhHHHhhcCCccccchhhhhccccc-ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchh
Confidence                  556677788888888888888888887766654 56677888888888888888888888776665543     


Q ss_pred             -----CCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccc
Q 040751          217 -----GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSA  291 (405)
Q Consensus       217 -----~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~  291 (405)
                           ...|.||||+|+.+++.  +++++|+...+..++..+..+.+++..+...+...     ....++++|++++.++
T Consensus       140 ~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~Li~~ga~~  212 (285)
T d1wdya_         140 DQERLRKGGATALMDAAEKGHV--EVLKILLDEMGADVNACDNMGRNALIHALLSSDDS-----DVEAITHLLLDHGADV  212 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHHTCH--HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTT-----THHHHHHHHHHTTCCS
T ss_pred             hhhhhcccCchHHHHHHHcCCH--HHHHHHHhccCCCcccccCCCCcccccccccccch-----HHHHHHHHHHHCCCCC
Confidence                 34578888888888888  88888888766667778888888887776654221     1235889999998886


Q ss_pred             cccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHH
Q 040751          292 SNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY  371 (405)
Q Consensus       292 ~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v  371 (405)
                       +.. +..|.||||.|+..|+.+++++|++++...                     ++.+|..|.||||+|++.|+.+++
T Consensus       213 -n~~-~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d---------------------in~~d~~G~TpL~~A~~~~~~eiv  269 (285)
T d1wdya_         213 -NVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIE---------------------INDTDSDGKTALLLAVELKLKKIA  269 (285)
T ss_dssp             -SCC-CTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             -Ccc-CCCCCCccchhhhcCcHHHHHHHHHcCCCC---------------------CcCCCCCCCCHHHHHHHcCCHHHH
Confidence             333 348999999999999999999999864322                     667788999999999999999999


Q ss_pred             HHHHhccccccccccC
Q 040751          372 DVMIRNTQVNYDAVNK  387 (405)
Q Consensus       372 ~~Ll~~~g~d~~~~~~  387 (405)
                      ++||++ |||+|++|.
T Consensus       270 ~~Ll~~-GAd~n~~d~  284 (285)
T d1wdya_         270 ELLCKR-GASTDCGDL  284 (285)
T ss_dssp             HHHHHH-SSCSCCSSC
T ss_pred             HHHHHC-CCCCCcccC
Confidence            999998 999999884

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=244.58  Aligned_cols=220  Identities=27%  Similarity=0.287  Sum_probs=195.1

Q ss_pred             CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751          102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY  181 (405)
Q Consensus       102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~  181 (405)
                      +.+.|+.++..|+.+.|+.++......                 ++.+|..|+||||+|+..|+.+++++|+..+.... 
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~-----------------~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-   64 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSL-----------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-   64 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGG-----------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCc-----------------CcCcCCCCCCHHHHHHHhhhhcccccccccccccc-
Confidence            357899999999999998888765432                 56889999999999999999999999999998877 


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751          182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH  261 (405)
Q Consensus       182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~  261 (405)
                      .....+.++++.++..++.+++++|+++|++++..|..|.||||+|+..++.  +++++|++.+.+ ++.++..|.||||
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~--e~~~~Ll~~g~d-~~~~~~~~~t~L~  141 (223)
T d1uoha_          65 DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH--EIAVMLLEGGAN-PDAKDHYEATAMH  141 (223)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             cccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCH--HHHHHHHHCCCC-CCCcCCCCCccch
Confidence            6677889999999999999999999999999999999999999999999999  999999988765 7888999999999


Q ss_pred             HHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHH
Q 040751          262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA  341 (405)
Q Consensus       262 ~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  341 (405)
                      +|+..+         ..+++++|.+.+.++ +..+ ..|+||||+|+..|+.+++++|+++|++                
T Consensus       142 ~a~~~~---------~~~~~~~L~~~~~~i-~~~d-~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----------------  194 (223)
T d1uoha_         142 RAAAKG---------NLKMIHILLYYKAST-NIQD-TEGNTPLHLACDEERVEEAKLLVSQGAS----------------  194 (223)
T ss_dssp             HHHHTT---------CHHHHHHHHHTTCCS-CCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------
T ss_pred             hhhhcC---------Ccchhhhhcccccee-eecc-CCCCceeccccccCcHHHHHHHHHCCCC----------------
Confidence            999998         446788888888776 4444 4899999999999999999999999987                


Q ss_pred             HHhccccccccCCCCCHHHHHHHhCCcHHHHHHHh
Q 040751          342 VVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIR  376 (405)
Q Consensus       342 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~  376 (405)
                            ++.+|..|+||||+| ..|+.+++++||+
T Consensus       195 ------~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         195 ------IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             ------SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             ------CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence                  456777888999988 5799999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-35  Score=243.71  Aligned_cols=219  Identities=25%  Similarity=0.274  Sum_probs=131.3

Q ss_pred             cchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHH
Q 040751           64 NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR  143 (405)
Q Consensus        64 ~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  143 (405)
                      .++|+.+  |..|+.+.++.+++   ..+..++..|..|+||||+|+..|+.+++++|++.+....              
T Consensus         4 ~~~~~~~--a~~G~~~~v~~~l~---~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~--------------   64 (223)
T d1uoha_           4 NLMVCNL--AYSGKLEELKESIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--------------   64 (223)
T ss_dssp             SSHHHHH--HHTTCHHHHHHHHH---HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC--------------
T ss_pred             HHHHHHH--HHhCCHHHHHHHHH---hCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc--------------
Confidence            3445555  56666555544432   3455556666666666666666666666666666655432              


Q ss_pred             HHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 040751          144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTA  223 (405)
Q Consensus       144 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~  223 (405)
                          ..+..+.++++.++..++.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..+.||
T Consensus        65 ----~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~-~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~  139 (223)
T d1uoha_          65 ----DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA  139 (223)
T ss_dssp             ----CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ----cccccccccccccccccccchhHHHhccCceeE-eeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcc
Confidence                344455666666666666666666666666655 556666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH
Q 040751          224 LHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA  303 (405)
Q Consensus       224 L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~  303 (405)
                      ||.|+..+..  .+++.|+..+.+ ++.++..|+||||.|+..|         +.+++++|++.|+++ +..+ ..|+||
T Consensus       140 L~~a~~~~~~--~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g---------~~~~v~~LL~~Gad~-~~~d-~~g~tp  205 (223)
T d1uoha_         140 MHRAAAKGNL--KMIHILLYYKAS-TNIQDTEGNTPLHLACDEE---------RVEEAKLLVSQGASI-YIEN-KEEKTP  205 (223)
T ss_dssp             HHHHHHTTCH--HHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTT---------CHHHHHHHHHTTCCS-CCCC-TTSCCH
T ss_pred             chhhhhcCCc--chhhhhccccce-eeeccCCCCceeccccccC---------cHHHHHHHHHCCCCC-CCCC-CCCCCH
Confidence            6666666666  555555554443 5556666666666666665         335666666666554 2222 366666


Q ss_pred             HHHHHhcCCHHHHHHHHh
Q 040751          304 LHLAAGQGNAEIVDAIIS  321 (405)
Q Consensus       304 l~~A~~~~~~~~v~~Ll~  321 (405)
                      ||+| ..|+.+++++|++
T Consensus       206 l~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         206 LQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHC-CTTHHHHHHHHHC
T ss_pred             HHHH-HCCCHHHHhcccC
Confidence            6665 3566666666664

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.4e-35  Score=257.29  Aligned_cols=237  Identities=24%  Similarity=0.280  Sum_probs=196.4

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      .+.|||+.||..|+.++|++||++|++++                  ..|.+|.||||+|+..|+.+++++|+++|.+..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn------------------~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~  100 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADIN------------------YANVDGLTALHQACIDDNVDMVKFLVENGANIN  100 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTT------------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCC------------------ccCCCCCcHHHHHHhcCCceeeeeecccccccc
Confidence            45699999999999999999999999854                  889999999999999999999999999999876


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI  260 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l  260 (405)
                       ..+..+.+||++++..++.++++.|+++|+..+..+..+.+|+++|+..+..  +.+..++...+.........+..+.
T Consensus       101 -~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~~  177 (291)
T d1s70b_         101 -QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME--ELLQNEVNRQGVDIEAARKEEERIM  177 (291)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH--HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             -cccccccccccccccccccchhhcccccCcccccccccCccccccccccccc--hhccccccccccccccccccccccc
Confidence             6788899999999999999999999999999999999999999999999888  8888888765443322221111111


Q ss_pred             HHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHH
Q 040751          261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHY  340 (405)
Q Consensus       261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~  340 (405)
                      ...                ....+..... . .......|.||||+|+..|+.+++++|++.|++               
T Consensus       178 ~~~----------------~~~~~~~~~~-~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d---------------  224 (291)
T d1s70b_         178 LRD----------------ARQWLNSGHI-N-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---------------  224 (291)
T ss_dssp             HHH----------------HHHHHHHTCC-C-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------------
T ss_pred             ccc----------------chhhhccccc-c-cccccCCCCChhhHHHHcCChhhhcccccceec---------------
Confidence            111                1222222221 1 223335889999999999999999999999887               


Q ss_pred             HHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751          341 AVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE  399 (405)
Q Consensus       341 a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~  399 (405)
                             +|.++..|+||||+|++.|+.++|++|+++ |+|++.+|..|+||||+|.++
T Consensus       225 -------in~~~~~g~TpL~~A~~~g~~~iv~lLl~~-Gadv~~~d~~G~TaL~~A~e~  275 (291)
T d1s70b_         225 -------VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADED  275 (291)
T ss_dssp             -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSG
T ss_pred             -------ccccccCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHH
Confidence                   456677899999999999999999999997 999999999999999999873

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-35  Score=248.38  Aligned_cols=233  Identities=21%  Similarity=0.189  Sum_probs=182.6

Q ss_pred             hhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751           59 TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG  138 (405)
Q Consensus        59 ~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~  138 (405)
                      .+++|+||||+|  +..++.+++++|++. ......++.++..|.||||+|+..|+.+++++|+++|++++         
T Consensus         5 i~~~G~t~Lh~A--~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~---------   72 (255)
T d1oy3d_           5 VTEDGDTALHLA--VIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL---------   72 (255)
T ss_dssp             CCTTCCCHHHHH--HHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---------
T ss_pred             CCcCCCCHHHHH--HHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhccccccccccccccccc---------
Confidence            456799999999  999999999999883 33455678889999999999999999999999999999865         


Q ss_pred             hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCC---------CCCcHHHHHHHcC----CHHHHHH
Q 040751          139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN---------DGKTPLYMAAESR----SSDMVLA  205 (405)
Q Consensus       139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~---------~g~t~L~~a~~~~----~~~~v~~  205 (405)
                               ..|..|.||||+|+..++.+++++|++.+.........         ...+....+....    .......
T Consensus        73 ---------~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (255)
T d1oy3d_          73 ---------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR  143 (255)
T ss_dssp             ---------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred             ---------ccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHH
Confidence                     78899999999999999999999999876553311111         1111111111111    1112222


Q ss_pred             HHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHH
Q 040751          206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLL  285 (405)
Q Consensus       206 Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll  285 (405)
                      ....+.+++.++..|.||||+|+..++.  +++++|++.+.......+..|.||||+|+..|         +.+++++|+
T Consensus       144 ~~~~~~~in~~d~~g~TpLh~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~---------~~~~v~~Ll  212 (255)
T d1oy3d_         144 DEDWRLQLEAENYDGHTPLHVAVIHKDA--EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ---------AASVLELLL  212 (255)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT---------CHHHHHHHH
T ss_pred             hhhcCcccccccccCccccccccccccc--ccccchhccccccccccccccccccccccccc---------HHHHHHHHH
Confidence            2334567788899999999999999999  99999999888766666788999999999998         557999999


Q ss_pred             hhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCc
Q 040751          286 ETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPE  325 (405)
Q Consensus       286 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  325 (405)
                      ++|.++ +..+ ..|+||||+|+..++.+++++|+++|++
T Consensus       213 ~~gadi-n~~d-~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         213 KAGADP-TARM-YGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HTTCCT-TCCC-TTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HCCCCC-CCCC-CCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999887 4444 4899999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=2.5e-35  Score=255.35  Aligned_cols=250  Identities=21%  Similarity=0.272  Sum_probs=198.3

Q ss_pred             ChHHHHHHH-hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc-CCCchHhHHHHhCCCHHHHHHH--------
Q 040751          103 DTPLHVAAK-FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN-NEKNTALHEAVCHKNVDVVKIL--------  172 (405)
Q Consensus       103 ~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~L--------  172 (405)
                      .||||+++. .|+.++++.|.+.+.+                    ..+ .+|+||||+|+..|+.+++++|        
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n--------------------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~   60 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVN--------------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC   60 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTT--------------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCC--------------------cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHH
Confidence            378886554 5667777777776654                    333 4699999999999999988776        


Q ss_pred             HhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh--hhhh
Q 040751          173 TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE--NLIK  250 (405)
Q Consensus       173 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~--~~~~  250 (405)
                      ++.|++++ .++..|.||||+|+..|+.+++++|+++|++++.++..|.|||+.|+..++.  .++..+.....  ..++
T Consensus        61 l~~Gadvn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~--~~~~~l~~~~~~~~~~~  137 (277)
T d2fo1e1          61 IAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF--GMMVYMLNSTKLKGDIE  137 (277)
T ss_dssp             HHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHTTSHHHHHTTS
T ss_pred             HHcCCCcc-ccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcch--hhhhhhhhccccccccc
Confidence            56789998 7899999999999999999999999999999999999999999999999998  88887766543  2345


Q ss_pred             hcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc------ccccccCCccHHHHHHhcCCHHHHHHHHhcCC
Q 040751          251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS------NIADKDRKMTALHLAAGQGNAEIVDAIISKNP  324 (405)
Q Consensus       251 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  324 (405)
                      ..+..+.++.+.+...+..+..      ..+..+.+......      ....+..|.||||+++..++.+++++++....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~  211 (277)
T d2fo1e1         138 ELDRNGMTALMIVAHNEGRDQV------ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG  211 (277)
T ss_dssp             CCCTTSCCHHHHHHHSCSTTHH------HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred             ccccccchhHHHHHhccccccc------ccccccccccccccccccccccccccCCCCcccccccccccccccccccccc
Confidence            5677888999998877643221      13333333222111      11122478999999999999999998876655


Q ss_pred             cccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          325 ECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       325 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                      ..                     .+.+|..|+||||+|++.|+.+++++|+++ |+|++.+|..|+||||+|++.+..+
T Consensus       212 ~~---------------------~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~-gadin~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         212 SN---------------------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             CC---------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             cc---------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            43                     556778899999999999999999999997 9999999999999999999998764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.4e-35  Score=253.16  Aligned_cols=256  Identities=21%  Similarity=0.228  Sum_probs=199.0

Q ss_pred             cchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHHHHhCcHHHHHHHH--------HccCCCCCchhH
Q 040751           64 NTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVAAKFGHSGIVTFLV--------ERAKLPQHENEE  134 (405)
Q Consensus        64 ~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~  134 (405)
                      .||||+++ +..|...+.+.|.+      ..++..+ ..|+||||+|+..|+.++|++|+        ++|++       
T Consensus         1 ~~p~~~~~-~~~~~~~~~~~l~~------~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-------   66 (277)
T d2fo1e1           1 ESPIKLHT-EAAGSYAITEPITR------ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-------   66 (277)
T ss_dssp             CCCCHHHH-HHHSSSCCCSCCST------TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-------
T ss_pred             CChHHHHH-HhCCCHHHHHHHHh------cCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-------
Confidence            48999885 44667676666644      2244444 45999999999999998887774        55676       


Q ss_pred             HhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC---C
Q 040751          135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS---T  211 (405)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g---~  211 (405)
                                 ++.+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..++.++++++...+   .
T Consensus        67 -----------vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  134 (277)
T d2fo1e1          67 -----------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  134 (277)
T ss_dssp             -----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             -----------ccccCCCCCeeeccccccccccccccccccccccc-cccccccccccchhhhcchhhhhhhhhcccccc
Confidence                       45889999999999999999999999999999988 78899999999999999999999988765   4


Q ss_pred             CCcccCCCCCcHHHHHHhcCCccH-HHHHHHHHhhh-------hhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHH
Q 040751          212 SVSHEGPNGKTALHAAAMKFDLVD-TALRKLLEKKE-------NLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNL  283 (405)
Q Consensus       212 ~~~~~~~~~~t~L~~a~~~~~~~~-~~v~~Ll~~~~-------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~  283 (405)
                      .++..+....++.+.+...+.... ..+..+.....       ......+..|.|||+.++..++         .++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~---------~~~~~~  205 (277)
T d2fo1e1         135 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN---------MPIVKY  205 (277)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC---------HHHHHH
T ss_pred             cccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccccc---------cccccc
Confidence            566677888999999988776521 22222222211       1133456679999999999884         456666


Q ss_pred             HHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHH
Q 040751          284 LLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLA  363 (405)
Q Consensus       284 Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~  363 (405)
                      ++.......+.. +..|.||||+|+..|+.+++++|+++|++                      ++.+|..|+||||+|+
T Consensus       206 ~l~~~~~~~~~~-d~~g~tpL~~A~~~g~~~iv~~Ll~~gad----------------------in~~d~~G~T~L~~A~  262 (277)
T d2fo1e1         206 LVGEKGSNKDKQ-DEDGKTPIMLAAQEGRIEVVMYLIQQGAS----------------------VEAVDATDHTARQLAQ  262 (277)
T ss_dssp             HHHHSCCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCC----------------------SSCCCSSSCCHHHHHH
T ss_pred             cccccccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHCcCC----------------------CCCcCCCCCCHHHHHH
Confidence            555444443433 34899999999999999999999999987                      5667888999999999


Q ss_pred             HhCCcHHHHHHHhc
Q 040751          364 AVRRNEFYDVMIRN  377 (405)
Q Consensus       364 ~~~~~~~v~~Ll~~  377 (405)
                      +.|+.++|++|++.
T Consensus       263 ~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         263 ANNHHNIVDIFDRC  276 (277)
T ss_dssp             HTTCHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHh
Confidence            99999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.4e-34  Score=239.65  Aligned_cols=214  Identities=21%  Similarity=0.295  Sum_probs=184.3

Q ss_pred             chHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc---cCCCCCcHHHHHHhc
Q 040751          154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSH---EGPNGKTALHAAAMK  230 (405)
Q Consensus       154 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~---~~~~~~t~L~~a~~~  230 (405)
                      .+|||+|+..|+.++++.|++.+......++.+|.||||+|+..|+.+++++|+++|++++.   .+..+.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            48999999999999999999875544448899999999999999999999999999999864   466789999999999


Q ss_pred             CCccHHHHHHHHHhhhh-hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHh
Q 040751          231 FDLVDTALRKLLEKKEN-LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG  309 (405)
Q Consensus       231 ~~~~~~~v~~Ll~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~  309 (405)
                      +..  ++++.++..+.. .....+..+.|+++.++..+         +.++++.|+..+... .. .+..|+||||+|+.
T Consensus        81 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~l~~~~~~~-~~-~~~~g~t~l~~a~~  147 (229)
T d1ixva_          81 GNL--EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---------WFEVSQFLIENGASV-RI-KDKFNQIPLHRAAS  147 (229)
T ss_dssp             TCH--HHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHTTCCS-CC-CCTTSCCHHHHHHH
T ss_pred             ccc--ccccccccccccccccccccccccccccccccc---------hhhhhhhhhhhcccc-cc-cCCCCCCccchhhh
Confidence            998  888888776543 24456678999999999987         557888888888765 32 33488999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCC
Q 040751          310 QGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQN  389 (405)
Q Consensus       310 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g  389 (405)
                      .++.+++++|++.++..                     ++.+|..|+||||+|++.|+.+++++||++.|+|++.+|..|
T Consensus       148 ~~~~~~~~~Ll~~~~~~---------------------in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         148 VGSLKLIELLCGLGKSA---------------------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             HTCHHHHHHHHTTTCCC---------------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ccccccccccccccccc---------------------ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence            99999999999988665                     677788899999999999999999999986699999999999


Q ss_pred             Cchhhhhhcccc
Q 040751          390 VSVEHILDYEHI  401 (405)
Q Consensus       390 ~t~l~~a~~~~~  401 (405)
                      +||||+|+..+.
T Consensus       207 ~t~l~~A~~~~~  218 (229)
T d1ixva_         207 AKAEDVALNEQV  218 (229)
T ss_dssp             CCTGGGCSCHHH
T ss_pred             CCHHHHHhhHHH
Confidence            999999987654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=239.22  Aligned_cols=264  Identities=21%  Similarity=0.217  Sum_probs=222.8

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA  109 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A  109 (405)
                      ++.|+.|++.||+++|++|+++|++.+ ..+..|+||||+|  +..|+.+++++|++    .+......+..+.+|.+.|
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A--~~~~~~eiv~~L~~----~~~~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHH--HHcCCHHHhhhhcc----ccccccccccccchhhHHH
Confidence            467999999999999999999999887 4445799999999  99999999999877    4566777788899999999


Q ss_pred             HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc--------
Q 040751          110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY--------  181 (405)
Q Consensus       110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~--------  181 (405)
                      +..+..+...+++++.....                  ..+..+.++++.|+..+....++.++....+++.        
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGADVN------------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ  141 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT------------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred             hhcCCccccchhhhhccccc------------------ccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhh
Confidence            99999999999999876543                  5677899999999999999999999987665441        


Q ss_pred             -ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHhcCCc--cHHHHHHHHHhhhhhhhhcccCCC
Q 040751          182 -SANNDGKTPLYMAAESRSSDMVLALLEN-STSVSHEGPNGKTALHAAAMKFDL--VDTALRKLLEKKENLIKETDQYGW  257 (405)
Q Consensus       182 -~~~~~g~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~  257 (405)
                       .....|.||||+|+..|+.+++++|+++ |++++..+..+.+++..+......  ...++++|++.+.+ ++.++..|.
T Consensus       142 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~  220 (285)
T d1wdya_         142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGK  220 (285)
T ss_dssp             HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSC
T ss_pred             hhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCC
Confidence             2344689999999999999999999965 899999999999988877655332  22688889888766 788899999


Q ss_pred             CHHHHHHHcChhhhhhhccccchhHHHHhh-cccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 040751          258 TPIHYAAYHGMYWINRFYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD  331 (405)
Q Consensus       258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  331 (405)
                      ||||.|+..|         +.+++++|++. +.++ +..+ ..|.||||+|++.|+.+++++|+++|+++ +.+|
T Consensus       221 t~L~~a~~~~---------~~~~v~~lL~~~g~di-n~~d-~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~-n~~d  283 (285)
T d1wdya_         221 TPLILAVEKK---------HLGLVQRLLEQEHIEI-NDTD-SDGKTALLLAVELKLKKIAELLCKRGAST-DCGD  283 (285)
T ss_dssp             CHHHHHHHTT---------CHHHHHHHHHSSSCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSSCS-CCSS
T ss_pred             CccchhhhcC---------cHHHHHHHHHcCCCCC-cCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-Cccc
Confidence            9999999998         55789999975 5555 4443 48999999999999999999999999997 5544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=236.77  Aligned_cols=225  Identities=21%  Similarity=0.177  Sum_probs=197.7

Q ss_pred             HHHHHHhhcCCCchhhhhHHHH-HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           32 PKFFKAAADGNVEPFKDMAREK-IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        32 ~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      .|||+||+.|+.+.|+.|++.+ ...+..+.+|+||||+|  +..|+.+++++|++. .......+..+..|.+|+|+|+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A--~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH--HHcCCccccchhhhh-hccccccccccccccccccccc
Confidence            5899999999999999999875 45558888999999999  999999999999872 1112223456778999999999


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP  190 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  190 (405)
                      ..+..++++.++..+....                ....+..+.++++.++..++.+++++|++.|.... ..+..|+||
T Consensus        79 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~t~  141 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPD----------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIP  141 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCH
T ss_pred             ccccccccccccccccccc----------------ccccccccccccccccccchhhhhhhhhhhccccc-ccCCCCCCc
Confidence            9999999999999987654                44667789999999999999999999999999987 788999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChh
Q 040751          191 LYMAAESRSSDMVLALLENS-TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMY  269 (405)
Q Consensus       191 L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~  269 (405)
                      ||+|+..|+.+++++|++.| .+++.+|.+|+||||+|+..++.  +++++|++..+.+++.+|..|.|||++|+..   
T Consensus       142 l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~--~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~---  216 (229)
T d1ixva_         142 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG--DAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---  216 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHCCCSCCCCTTSCCTGGGCSCH---
T ss_pred             cchhhhcccccccccccccccccccccccccCCchhhhcccccH--HHHHHHHHhcCCCCCCcCCCCCCHHHHHhhH---
Confidence            99999999999999999987 67899999999999999999999  9999999876655899999999999999743   


Q ss_pred             hhhhhccccchhHHHHhhccc
Q 040751          270 WINRFYGNYGTVNLLLETDQS  290 (405)
Q Consensus       270 ~~~~~l~~~~~~~~Ll~~~~~  290 (405)
                               +++++|+++|.+
T Consensus       217 ---------~~~~~Ll~~g~d  228 (229)
T d1ixva_         217 ---------QVKKFFLNNVVD  228 (229)
T ss_dssp             ---------HHHHHHHHHCCC
T ss_pred             ---------HHHHHHHHcCCC
Confidence                     488999998875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-31  Score=219.09  Aligned_cols=217  Identities=23%  Similarity=0.255  Sum_probs=183.4

Q ss_pred             CCchHhHHHHhCCCHHHHHHHHh----cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751          152 EKNTALHEAVCHKNVDVVKILTK----EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA  227 (405)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  227 (405)
                      +|.||||+|+..|+.++++.|++    .|++++ ..+..|.||||+|+..|+.+++++|+++|++.+.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            69999999999999999998875    688887 7889999999999999999999999999999999999999999999


Q ss_pred             HhcCCccHHHHHHHHHhhhh---hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHH
Q 040751          228 AMKFDLVDTALRKLLEKKEN---LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTAL  304 (405)
Q Consensus       228 ~~~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l  304 (405)
                      ......  ..++.+......   ..+.......++++.+....         .....+.|....... .......+.+++
T Consensus        81 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~l~~~~~~~-~~~~~~~~~~~l  148 (228)
T d1k1aa_          81 CEHRSP--TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE---------CQETVQLLLERGADI-DAVDIKSGRSPL  148 (228)
T ss_dssp             HHTTCH--HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCCTTTCCCHH
T ss_pred             cccccc--cchhhhhhccccccccccccccccccccccccccc---------cchhhhhhhcccccc-ccccccchhhHH
Confidence            999998  888877665332   23344566788999888765         234555666555554 333345889999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccccc
Q 040751          305 HLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA  384 (405)
Q Consensus       305 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~  384 (405)
                      +.|+..+...+++++++++..                      .+.+|..|.||||+|+..|+.+++++|+++ |+|++.
T Consensus       149 ~~a~~~~~~~~~~~~~~~~~~----------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-Gad~n~  205 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQHGAN----------------------VNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSL  205 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----------------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred             HHHHHhhhhhhhhhhhhhccc----------------------cccccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCC
Confidence            999999999999999998765                      456677899999999999999999999998 999999


Q ss_pred             ccCCCCchhhhhhcccccCC
Q 040751          385 VNKQNVSVEHILDYEHILDF  404 (405)
Q Consensus       385 ~~~~g~t~l~~a~~~~~~~~  404 (405)
                      +|..|+||||+|++.+++|+
T Consensus       206 ~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         206 KNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             CCTTSCCTTTTCSSHHHHHH
T ss_pred             CCCCCCCHHHHHHhCCCccc
Confidence            99999999999999887653

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.1e-31  Score=233.83  Aligned_cols=208  Identities=22%  Similarity=0.224  Sum_probs=185.9

Q ss_pred             CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751           31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA  110 (405)
Q Consensus        31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~  110 (405)
                      .++|+.||..|++++|++||++|++++..+.+|.||||+|  +..|+.+++++|++    .+......+..+.+||+.|+
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A--~~~g~~eiv~~Ll~----~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA--CIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHH--HhcCCceeeeeecc----cccccccccccccccccccc
Confidence            3689999999999999999999999998899999999999  99999999999987    35556777888999999999


Q ss_pred             HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc-CCC-----------
Q 040751          111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE-DPD-----------  178 (405)
Q Consensus       111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-~~~-----------  178 (405)
                      ..++.++++.|+++|....                  ..+..+.+++++|+..+..+.++.++.. +..           
T Consensus       115 ~~~~~~~~~~l~~~~~~~~------------------~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  176 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVG------------------AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI  176 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             cccccchhhcccccCcccc------------------cccccCccccccccccccchhcccccccccccccccccccccc
Confidence            9999999999999998743                  6788999999999999988888888753 221           


Q ss_pred             --------------CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHh
Q 040751          179 --------------YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEK  244 (405)
Q Consensus       179 --------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~  244 (405)
                                    .....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.  +++++|++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~--~iv~lLl~~  254 (291)
T d1s70b_         177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKE--EACRILVEN  254 (291)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHHT
T ss_pred             ccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCH--HHHHHHHHC
Confidence                          1224677899999999999999999999999999999999999999999999999  999999998


Q ss_pred             hhhhhhhcccCCCCHHHHHHH
Q 040751          245 KENLIKETDQYGWTPIHYAAY  265 (405)
Q Consensus       245 ~~~~~~~~~~~~~t~l~~a~~  265 (405)
                      +.+ ++.+|..|.||||+|++
T Consensus       255 Gad-v~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         255 LCD-MEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCC-TTCCCTTSCCTTTSCCS
T ss_pred             CCC-CCCcCCCCCCHHHHHHH
Confidence            766 78999999999999964

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-30  Score=214.78  Aligned_cols=219  Identities=27%  Similarity=0.344  Sum_probs=182.3

Q ss_pred             CCCChHHHHHHHhCcHHHHHHHHH----ccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751          100 AKGDTPLHVAAKFGHSGIVTFLVE----RAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE  175 (405)
Q Consensus       100 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  175 (405)
                      .+|.||||+||..|+.++|+.|++    .|+++                  +..|.+|.||||+|+..|+.+++++|+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i------------------n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~   62 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL------------------DIYNNLRQTPLHLAVITTLPSVVRLLVTA   62 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC------------------CccCCCCCccceehhcccccccccccccc
Confidence            369999999999999999999885    66664                  47889999999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhh
Q 040751          176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS----VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKE  251 (405)
Q Consensus       176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~----~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~  251 (405)
                      |++.+ .....+.++++.|...++.++++.+......    .+.......++|+.+......  .....|..........
T Consensus        63 ga~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~l~~~~~~~~~~  139 (228)
T d1k1aa_          63 GASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ--ETVQLLLERGADIDAV  139 (228)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHTTCCTTCC
T ss_pred             ccccc-ccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccc--hhhhhhhccccccccc
Confidence            99987 6788899999999999999999988876533    344556678999999998888  8888887776665566


Q ss_pred             cccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 040751          252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD  331 (405)
Q Consensus       252 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~  331 (405)
                      ....+.++++.|+..+         ...+++.+++.+... ... +..|.||||+|+..|+.+++++|+++|+++     
T Consensus       140 ~~~~~~~~l~~a~~~~---------~~~~~~~~~~~~~~~-~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~-----  203 (228)
T d1k1aa_         140 DIKSGRSPLIHAVENN---------SLSMVQLLLQHGANV-NAQ-MYSGSSALHSASGRGLLPLVRTLVRSGADS-----  203 (228)
T ss_dssp             CTTTCCCHHHHHHHTT---------CHHHHHHHHHTTCCT-TCB-CTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-----
T ss_pred             cccchhhHHHHHHHhh---------hhhhhhhhhhhcccc-ccc-cccCcchHHHHHHcCCHHHHHHHHHCCCCC-----
Confidence            7778999999999987         446788888887765 333 348999999999999999999999999874     


Q ss_pred             CCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHH
Q 040751          332 NRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD  372 (405)
Q Consensus       332 ~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~  372 (405)
                                       +.+|..|+||||+|+++|+.++||
T Consensus       204 -----------------n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         204 -----------------SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -----------------TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             -----------------CCCCCCCCCHHHHHHhCCCccccC
Confidence                             455667777888888888777764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-31  Score=218.54  Aligned_cols=194  Identities=23%  Similarity=0.296  Sum_probs=155.8

Q ss_pred             CCchHhHHHHhCCCHH----HHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751          152 EKNTALHEAVCHKNVD----VVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA  227 (405)
Q Consensus       152 ~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a  227 (405)
                      +|.||||+|+..|+.+    +++++...+++++ .++..|+||||+|+..|+.+++++|+++|++++.++..|.|||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999854    5556667788887 7899999999999999999999999999999999999999999999


Q ss_pred             HhcCCccHHHHHHHHHhhhh-----hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCcc
Q 040751          228 AMKFDLVDTALRKLLEKKEN-----LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMT  302 (405)
Q Consensus       228 ~~~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t  302 (405)
                      +..+..  ++++.++.....     ........|.|||+.|+..+         +.+++++++..+... +...+.+|.|
T Consensus        80 ~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~---------~~~~~~~l~~~~~~~-~~~~~~~G~T  147 (221)
T d1iknd_          80 CEQGCL--ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG---------YLGIVELLVSLGADV-NAQEPCNGRT  147 (221)
T ss_dssp             HHHTCH--HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT---------CHHHHHHHHHHTCCT-TCCCTTTCCC
T ss_pred             cccccc--cccchhhhhcccccccccccccccccchhhhHHhhcC---------ChhheeeecccCccc-ccccccCCCC
Confidence            999999  999999876432     23334456788898888877         456777888887766 3334447888


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccc
Q 040751          303 ALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVN  381 (405)
Q Consensus       303 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d  381 (405)
                      |||+|++.|+.+++++|+++|++                      ++.+|..|.||||+|+..++.+++++|++. +.+
T Consensus       148 ~L~~A~~~g~~~~v~~Ll~~gad----------------------~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~-~~~  203 (221)
T d1iknd_         148 ALHLAVDLQNPDLVSLLLKCGAD----------------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-TLE  203 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCC----------------------SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-SCG
T ss_pred             ccccccccccHHHHHHHHhcCCc----------------------ccccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCc
Confidence            99999999999999998888876                      456677788888888888888888888876 443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-30  Score=216.19  Aligned_cols=182  Identities=23%  Similarity=0.221  Sum_probs=110.4

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      |.||||+|  +..|+.++++.|++.+...+..++..|..|+||||+|+..|+.+++++|+++|++++             
T Consensus         2 G~t~Lh~A--~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-------------   66 (221)
T d1iknd_           2 GDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-------------   66 (221)
T ss_dssp             CCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-------------
T ss_pred             CChHHHHH--HHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccc-------------
Confidence            66666666  666666555555544444455566666666666666666666666666666666643             


Q ss_pred             HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc-----cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 040751          143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR-----YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG  217 (405)
Q Consensus       143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~  217 (405)
                           ..+..|.|||++++..+..++++.|++.+....     ......|.||||.|+..++.+++++|+..|+.++..+
T Consensus        67 -----~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~  141 (221)
T d1iknd_          67 -----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE  141 (221)
T ss_dssp             -----CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             -----ccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccc
Confidence                 556666666666666666666666666543321     1233345666666666666666666666666665443


Q ss_pred             -CCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751          218 -PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG  267 (405)
Q Consensus       218 -~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~  267 (405)
                       .+|.||||.|+..|+.  +++++|++.+.+ ++.++..|+||||+|+..+
T Consensus       142 ~~~G~T~L~~A~~~g~~--~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         142 PCNGRTALHLAVDLQNP--DLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             TTTCCCHHHHHHHTTCH--HHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSS
T ss_pred             ccCCCCccccccccccH--HHHHHHHhcCCc-ccccCCCCCCHHHHHHHCC
Confidence             3466666666666666  666666665544 5666666666666666665

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.5e-29  Score=209.19  Aligned_cols=202  Identities=23%  Similarity=0.286  Sum_probs=171.6

Q ss_pred             HHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751          166 VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       166 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~  245 (405)
                      .|+|++|+++|++++...|.+|.||||+|+..|+.+++++|++.|++++.++..+.++++.++..+..  ..........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAM--GVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccc--cccccccccc
Confidence            48999999999999844688999999999999999999999999999999999999999999998887  6665555554


Q ss_pred             hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCc
Q 040751          246 ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPE  325 (405)
Q Consensus       246 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  325 (405)
                      ..........+.++.+.+....         .....+.|...+.+. ... +..|.||+++++.++..++++.+++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~~~~~~~-~~~-~~~~~t~l~~~~~~~~~~~~~~l~~~~~~  148 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLA---------IEGMVEDLITADADI-NAA-DNSGKTALHWAAAVNNTEAVNILLMHHAN  148 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTT---------CTTHHHHHHHTTCCT-TCB-CTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccccccccccccccccccc---------chhhhhhhhhhcccc-ccc-CCCCCCcchhhcccCcceeeeeecccccc
Confidence            4444455567888888877665         445777778777665 333 34789999999999999999999998876


Q ss_pred             ccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751          326 CYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD  403 (405)
Q Consensus       326 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~  403 (405)
                                            ++.+|..|.||||+|+..|+.+++++||++ |+|++.+|..|+||||+|++.++.+
T Consensus       149 ----------------------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-gad~n~~d~~g~Tpl~~A~~~~~~~  203 (209)
T d1ot8a_         149 ----------------------RDAQDDKDETPLFLAAREGSYEASKALLDN-FANREITDHMDRLPRDVASERLHHD  203 (209)
T ss_dssp             ----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ----------------------ccccccccccccchhccccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHH
Confidence                                  456677899999999999999999999997 9999999999999999999998765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=5.5e-31  Score=233.96  Aligned_cols=237  Identities=12%  Similarity=0.028  Sum_probs=142.8

Q ss_pred             ccccCCCChHHHHHHHhCcHHHHHH---HHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHH
Q 040751           96 LQVNAKGDTPLHVAAKFGHSGIVTF---LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKIL  172 (405)
Q Consensus        96 ~~~~~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  172 (405)
                      ...+..|.|||++|+.+|+.+++++   |++.|++++                  ..+.+|.||||+|++.|+.+++++|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in------------------~~~~~g~taL~~Aa~~G~~~~v~~L  145 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK------------------VIQAENYQAFRLAAENGHLHVLNRL  145 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--------------------CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc------------------ccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            3455667777777777777665554   566776643                  5666777777777777777777777


Q ss_pred             HhcCCCCccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc---ccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751          173 TKEDPDYRYS-ANNDGKTPLYMAAESRSSDMVLALLENSTSVS---HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL  248 (405)
Q Consensus       173 l~~~~~~~~~-~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~---~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~  248 (405)
                      ++.|++++.. .+..|.||||+|+..|+.++|++|++.|++..   ..+.++.||++.|+.+|+.  +++++|++.+.+ 
T Consensus       146 l~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~--~iv~~Ll~~ga~-  222 (346)
T d2ajaa1         146 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH--NVINFLLDCPVM-  222 (346)
T ss_dssp             HHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH--HHHHHHTTSHHH-
T ss_pred             HHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHH--HHHHHHHhCCCC-
Confidence            7777776521 12356777777777777777777777776542   2333455666667777777  777777766544 


Q ss_pred             hhhccc-------CCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc-cc------ccccCCccHHHHHHhcCCHH
Q 040751          249 IKETDQ-------YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS-NI------ADKDRKMTALHLAAGQGNAE  314 (405)
Q Consensus       249 ~~~~~~-------~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~-~~------~~~~~g~t~l~~A~~~~~~~  314 (405)
                      ++..+.       .+.++++.+...+..+.         ...+........ ..      .....+.++++.|+..+..+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld  293 (346)
T d2ajaa1         223 LAYAEIHEFEYGEKYVNPFIARHVNRLKEM---------HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLD  293 (346)
T ss_dssp             HHHHHHCTTTTTTTTHHHHHHHHHHHHHHH---------HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred             cchHHHHHHHcCcHhhhHHHHHhhccchHH---------HHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHH
Confidence            222211       12233333333221111         111111110000 00      00123457899999999999


Q ss_pred             HHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccc
Q 040751          315 IVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQ  379 (405)
Q Consensus       315 ~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g  379 (405)
                      ++++|++.+......                 ..+..+..|+||||+|++.|+.++|++||+.++
T Consensus       294 ~v~~Ll~~~~~~~~~-----------------~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p~  341 (346)
T d2ajaa1         294 DIRFLLSIPGIKALA-----------------PTATIPGDANELLRLALRLGNQGACALLLSIPS  341 (346)
T ss_dssp             HHHHHHTSTTTGGGS-----------------SCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHHHhCcChhhhc-----------------ccccCCCCCCcHHHHHHHcCcHHHHHHHhCCCC
Confidence            999999987653111                 023345678999999999999999999997643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2.6e-27  Score=195.49  Aligned_cols=204  Identities=23%  Similarity=0.208  Sum_probs=180.8

Q ss_pred             CchhhhhHHHHHHHhh-hhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHH
Q 040751           43 VEPFKDMAREKIESLL-TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFL  121 (405)
Q Consensus        43 ~~~v~~ll~~~~~~~~-~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  121 (405)
                      .|+|+.|+++|++.+. .|.+|.||||+|  +..|+.+++++|++    .+..++..+..+.++++.++..++.......
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A--~~~g~~e~v~~Ll~----~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLA--ARFARADAAKRLLD----AGADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHH--HHcCCHHHHHHHHh----hcccccccccccccccccccccccccccccc
Confidence            3789999999999985 688899999999  99999999999988    4677888999999999999999998887777


Q ss_pred             HHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHH
Q 040751          122 VERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSD  201 (405)
Q Consensus       122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~  201 (405)
                      .......                 .......+.++.+.+.........+.|...+.+++ ..+..|.|||++++..+..+
T Consensus        76 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~t~l~~~~~~~~~~  137 (209)
T d1ot8a_          76 LRNRATN-----------------LNARMHDGTTPLILAARLAIEGMVEDLITADADIN-AADNSGKTALHWAAAVNNTE  137 (209)
T ss_dssp             HTCTTCC-----------------TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHH
T ss_pred             ccccccc-----------------cccccccccccccccccccchhhhhhhhhhccccc-ccCCCCCCcchhhcccCcce
Confidence            7665443                 22345678889999999999999999999999987 67889999999999999999


Q ss_pred             HHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhh
Q 040751          202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINR  273 (405)
Q Consensus       202 ~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  273 (405)
                      +++.+++++.+++..|..|.||||+|+..|+.  ++++.|++.+.+ ++.+|..|.||||+|+..|+.++++
T Consensus       138 ~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~--~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         138 AVNILLMHHANRDAQDDKDETPLFLAAREGSY--EASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             eeeeeccccccccccccccccccchhccccHH--HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            99999999999999999999999999999999  999999998876 7888999999999999999654443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=4.5e-30  Score=228.05  Aligned_cols=235  Identities=13%  Similarity=0.038  Sum_probs=160.0

Q ss_pred             hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751           58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES  137 (405)
Q Consensus        58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~  137 (405)
                      ..+..|.||||+|  +.+|+.++++++.. +...+..++..+..|.||||+|+..|+.++|++|+++|++.+        
T Consensus        85 ~~~~~~~t~L~~A--a~~g~~~~~~~~~~-L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~--------  153 (346)
T d2ajaa1          85 KKGIKSEVICFVA--AITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI--------  153 (346)
T ss_dssp             HHTCCHHHHHHHH--HHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH--------
T ss_pred             hccCCCCcHHHHH--HHhCCHHHHHHHHH-HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc--------
Confidence            5566799999999  99999999888654 334678889999999999999999999999999999999864        


Q ss_pred             hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 040751          138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY--SANNDGKTPLYMAAESRSSDMVLALLENSTSVSH  215 (405)
Q Consensus       138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~  215 (405)
                              ....+.+|.||||+|+..|+.+++++|++.|+....  ..+..+.||++.|+..|+.+++++|+++|++++.
T Consensus       154 --------~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         154 --------MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             --------HHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             --------ccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch
Confidence                    222345689999999999999999999999876531  2344567888889999999999999999987653


Q ss_pred             cCCC-------CCcHHHHHHhcCCccHHHHHHHHHhhhhh--------hhhcccCCCCHHHHHHHcChhhhhhhccccch
Q 040751          216 EGPN-------GKTALHAAAMKFDLVDTALRKLLEKKENL--------IKETDQYGWTPIHYAAYHGMYWINRFYGNYGT  280 (405)
Q Consensus       216 ~~~~-------~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~--------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~  280 (405)
                      .+..       +.++++.++..+..  +....+.......        .......+.++++.++..+         ..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~---------~ld~  294 (346)
T d2ajaa1         226 AEIHEFEYGEKYVNPFIARHVNRLK--EMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV---------LLDD  294 (346)
T ss_dssp             HHHCTTTTTTTTHHHHHHHHHHHHH--HHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGG---------GHHH
T ss_pred             HHHHHHHcCcHhhhHHHHHhhccch--HHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCC---------hHHH
Confidence            2211       22233322222111  1111111000000        0000111235566666655         4467


Q ss_pred             hHHHHhhcccccccc---cccCCccHHHHHHhcCCHHHHHHHHhc
Q 040751          281 VNLLLETDQSASNIA---DKDRKMTALHLAAGQGNAEIVDAIISK  322 (405)
Q Consensus       281 ~~~Ll~~~~~~~~~~---~~~~g~t~l~~A~~~~~~~~v~~Ll~~  322 (405)
                      +++|++.+.......   .+..|.||||+|++.|+.+++++|++.
T Consensus       295 v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         295 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            777877654332211   123688999999999999999999974

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-27  Score=207.86  Aligned_cols=203  Identities=14%  Similarity=0.170  Sum_probs=130.6

Q ss_pred             HhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCcc-HHHHHHHHHhhhhhhhh
Q 040751          173 TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV-DTALRKLLEKKENLIKE  251 (405)
Q Consensus       173 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~-~~~v~~Ll~~~~~~~~~  251 (405)
                      ...+.+++...|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||.|+..++.. ...+..++.........
T Consensus        93 ~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~  172 (301)
T d1sw6a_          93 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL  172 (301)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE
T ss_pred             CccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhh
Confidence            34466777555889999999999999999999999999999999999999999999865310 02233344433444677


Q ss_pred             cccCCCCHHHHHHHcChhh----hhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccc
Q 040751          252 TDQYGWTPIHYAAYHGMYW----INRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECY  327 (405)
Q Consensus       252 ~~~~~~t~l~~a~~~~~~~----~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  327 (405)
                      ++..|+||||.++..+...    ..++. ...++..+...+........ ..+.++++.+........+..+...     
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----  245 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYY-LDILMGWIVKKQNRPIQSGT-NEKESKPNDKNGERKDSILENLDLK-----  245 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHH-HHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHH-----
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHH-HHHHHHHHHhcCCcchhccc-ccccchhHHHHhcchHHHHHHHhhH-----
Confidence            8889999999988654221    11100 00122333343333322222 2334444444333332222221100     


Q ss_pred             ccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhh
Q 040751          328 ELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILD  397 (405)
Q Consensus       328 ~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~  397 (405)
                                  .  .....+|.+|..|+||||+|++.|+.++|++||++ |||++.+|+.|+|||++|+
T Consensus       246 ------------~--~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~-GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         246 ------------W--IIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ------------H--HHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTC
T ss_pred             ------------H--HHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHcC
Confidence                        0  00113788999999999999999999999999997 9999999999999999985

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=181.19  Aligned_cols=154  Identities=22%  Similarity=0.184  Sum_probs=143.8

Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      +|||+|+..|+.++|++|+++|++++                  .+|.+|.||||+|+ .++.+++++|+++|++++ ..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n------------------~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~   62 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN------------------AQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LK   62 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT------------------CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC------------------ccCCcccccccccc-cccccccccccccccccc-cc
Confidence            89999999999999999999999854                  88999999999886 789999999999999987 78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHH
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA  263 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a  263 (405)
                      +..+.++++.++..+..+.++.|++.+.+++..+..+.+|++.|+..++.  +.++.|++.++.+.+.++..|.||||+|
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~--~~~~~Ll~~~~~~~~~~d~~g~TpL~~A  140 (156)
T d1ihba_          63 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL--RVVEFLVKHTASNVGHRNHKGDTACDLA  140 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             cccCcccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccCCCCCCHHHHH
Confidence            88999999999999999999999999999999999999999999999999  9999999998877889999999999999


Q ss_pred             HHcChhhhhhhccccchhHHHHhhc
Q 040751          264 AYHGMYWINRFYGNYGTVNLLLETD  288 (405)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~~~Ll~~~  288 (405)
                      +..+         +.+++++|+++|
T Consensus       141 ~~~~---------~~~iv~~Ll~~G  156 (156)
T d1ihba_         141 RLYG---------RNEVVSLMQANG  156 (156)
T ss_dssp             HHTT---------CHHHHHHHHHTC
T ss_pred             HHcC---------CHHHHHHHHhcC
Confidence            9998         557888888765

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=181.58  Aligned_cols=156  Identities=22%  Similarity=0.277  Sum_probs=141.1

Q ss_pred             CCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcC
Q 040751          152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKF  231 (405)
Q Consensus       152 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~  231 (405)
                      +| +|||+|+..|+.+++++|+++|++++ ..+..|.||||+|+ .++.+++++|+++|++++..+..+.++++.++..+
T Consensus         1 ~~-~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           1 WG-NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             CH-HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             Ch-HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-cccccccccccccccccccccccCccccccccccc
Confidence            35 89999999999999999999999997 78999999999886 78999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcC
Q 040751          232 DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG  311 (405)
Q Consensus       232 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~  311 (405)
                      ..  ..+..++..+.. .+..+..|.+|+++|+..+         +.+++++|++++....+..+ ..|+||||+|+..+
T Consensus        78 ~~--~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~---------~~~~~~~Ll~~~~~~~~~~d-~~g~TpL~~A~~~~  144 (156)
T d1ihba_          78 FL--DTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEG---------HLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYG  144 (156)
T ss_dssp             CH--HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHSCCCTTCCC-TTSCCHHHHHHHTT
T ss_pred             cc--cccccccccccc-ccccccccccccccccccc---------cccccccccccccccccccC-CCCCCHHHHHHHcC
Confidence            99  999999887765 7888999999999999998         55788999999875534444 58999999999999


Q ss_pred             CHHHHHHHHhcC
Q 040751          312 NAEIVDAIISKN  323 (405)
Q Consensus       312 ~~~~v~~Ll~~~  323 (405)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=174.00  Aligned_cols=150  Identities=18%  Similarity=0.228  Sum_probs=94.9

Q ss_pred             hhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHH
Q 040751           66 ILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQM  145 (405)
Q Consensus        66 ~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  145 (405)
                      .|+.|  +..|+.++++.|++   ..+.+++..|..|+||||+|+ .|+.+++++|++++.+++                
T Consensus         5 ~L~~A--a~~g~~~~vk~lL~---~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~----------------   62 (156)
T d1bd8a_           5 RLSGA--AARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN----------------   62 (156)
T ss_dssp             HHHHH--HHHTCHHHHHHHHH---TTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT----------------
T ss_pred             HHHHH--HHcCCHHHHHHHHH---hCCCCCCccCCCCCccccccc-cccccccccccccccccc----------------
Confidence            36666  66666666666543   334555666666666666665 356666666666666532                


Q ss_pred             hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751          146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH  225 (405)
Q Consensus       146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~  225 (405)
                        ..+..|.+|++.++..++.+++++++++|++++ ..+..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||
T Consensus        63 --~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          63 --VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLE  138 (156)
T ss_dssp             --CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHH
T ss_pred             --ccccccccccccccccccccccccccccccccc-cccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHH
Confidence              455566666666666666666666666666665 45666666666666666666666555 46666666666666666


Q ss_pred             HHHhcCCccHHHHHHHHH
Q 040751          226 AAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       226 ~a~~~~~~~~~~v~~Ll~  243 (405)
                      +|+..|+.  +++++|++
T Consensus       139 ~A~~~g~~--~iv~~Ll~  154 (156)
T d1bd8a_         139 LALQRGAQ--DLVDILQG  154 (156)
T ss_dssp             HHHHSCCH--HHHHHHHT
T ss_pred             HHHHcCCH--HHHHHHHh
Confidence            66666666  66666653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=170.49  Aligned_cols=151  Identities=22%  Similarity=0.227  Sum_probs=134.9

Q ss_pred             hHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      ..|+.|+..|+.++|++|+++ +.+                  ++..|..|.||||+|+. ++.+++++|++++.+++ .
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~------------------~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~-~   63 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVH------------------PDALNRFGKTALQVMMF-GSTAIALELLKQGASPN-V   63 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCC------------------TTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTT-C
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCC------------------CCccCCCCCcccccccc-ccccccccccccccccc-c
Confidence            469999999999999999987 455                  44789999999999875 88999999999999987 6


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHH
Q 040751          183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHY  262 (405)
Q Consensus       183 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  262 (405)
                      .+..|.+|+++++..++.+++++++++|++++.++..|.||||+|+..++.  +++++|+ .+.+ ++.++..|+||||+
T Consensus        64 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~--~i~~~L~-~~~~-~~~~d~~G~TpL~~  139 (156)
T d1bd8a_          64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT--AVVSFLA-AESD-LHRRDARGLTPLEL  139 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH--HHHHHHH-TTSC-TTCCCTTSCCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCeeeccccccccc--ccccccc-cccc-ccccCCCCCCHHHH
Confidence            788999999999999999999999999999999999999999999999999  9998776 4444 78899999999999


Q ss_pred             HHHcChhhhhhhccccchhHHHHhh
Q 040751          263 AAYHGMYWINRFYGNYGTVNLLLET  287 (405)
Q Consensus       263 a~~~~~~~~~~~l~~~~~~~~Ll~~  287 (405)
                      |+..|         +.+++++|++|
T Consensus       140 A~~~g---------~~~iv~~Ll~h  155 (156)
T d1bd8a_         140 ALQRG---------AQDLVDILQGH  155 (156)
T ss_dssp             HHHSC---------CHHHHHHHHTT
T ss_pred             HHHcC---------CHHHHHHHHhh
Confidence            99998         44678888765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.2e-24  Score=170.00  Aligned_cols=149  Identities=19%  Similarity=0.224  Sum_probs=93.9

Q ss_pred             chhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHH
Q 040751           65 TILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ  144 (405)
Q Consensus        65 ~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  144 (405)
                      ||||.|  ++.|+.+++++|++.    +.+++ .+..|+||||+|+..++.++++.++.......               
T Consensus         4 t~L~~A--a~~g~~~~v~~LL~~----ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~---------------   61 (153)
T d1awcb_           4 KKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD---------------   61 (153)
T ss_dssp             HHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT---------------
T ss_pred             HHHHHH--HHCCCHHHHHHHHHc----CCCcc-cccCCCcccccccccccccccccccccccccc---------------
Confidence            666666  666666666666552    22222 45666666666666666666666666554432               


Q ss_pred             HhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHH
Q 040751          145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTAL  224 (405)
Q Consensus       145 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L  224 (405)
                         .....+.++++.++.....+++++++..+.+.+ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        62 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl  137 (153)
T d1awcb_          62 ---ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             ---CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ---ccccccccccccccccccceeeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHH
Confidence               344455566666666666666666666666655 5566666666666666666666666666666666666666666


Q ss_pred             HHHHhcCCccHHHHHHH
Q 040751          225 HAAAMKFDLVDTALRKL  241 (405)
Q Consensus       225 ~~a~~~~~~~~~~v~~L  241 (405)
                      |+|+.+|+.  +++++|
T Consensus       138 ~~A~~~g~~--eiv~lL  152 (153)
T d1awcb_         138 DISIDNGNE--DLAEIL  152 (153)
T ss_dssp             HHHHHTTCH--HHHHHH
T ss_pred             HHHHHcCCH--HHHHhC
Confidence            666666666  666543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.1e-24  Score=166.82  Aligned_cols=148  Identities=20%  Similarity=0.196  Sum_probs=135.3

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      .|||+.|++.|+.++|++||++|++.+                   .+..|.||||+|+..++.++++.++....... .
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-------------------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~   62 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-------------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-A   62 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-------------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-C
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-------------------cccCCCcccccccccccccccccccccccccc-c
Confidence            499999999999999999999998753                   58889999999999999999999999887766 5


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHH
Q 040751          183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHY  262 (405)
Q Consensus       183 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~  262 (405)
                      ....+.++++.++...+.++++++..+|++++.++..|.||||+|+..|+.  +++++|++.+.+ ++.++..|.|||++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~--~iv~~ll~~gad-~~~~d~~g~Tpl~~  139 (153)
T d1awcb_          63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ--EVVELLIKYGAD-VHTQSKFCKTAFDI  139 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred             cccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchh--heeeeccccccC-CcccCCCCCCHHHH
Confidence            677888999999999999999999999999999999999999999999999  999999988765 78899999999999


Q ss_pred             HHHcChhhhhh
Q 040751          263 AAYHGMYWINR  273 (405)
Q Consensus       263 a~~~~~~~~~~  273 (405)
                      |+..|+.++.+
T Consensus       140 A~~~g~~eiv~  150 (153)
T d1awcb_         140 SIDNGNEDLAE  150 (153)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHcCCHHHHH
Confidence            99999665444

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-24  Score=161.85  Aligned_cols=121  Identities=17%  Similarity=0.128  Sum_probs=110.2

Q ss_pred             CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751          101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR  180 (405)
Q Consensus       101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~  180 (405)
                      .+.++||+|+..|+.++|++|+++|++++                  .++..|.||+|.|+ .|+.+++++|+++|++++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n------------------~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~   62 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPN------------------APNSYGRRPIQVMM-MGSARVAELLLLHGAEPN   62 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTT------------------CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccc------------------cccccccccccccc-cccccccccccccccccc
Confidence            35689999999999999999999999854                  78999999999775 799999999999999998


Q ss_pred             cccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHH
Q 040751          181 YSANNDG-KTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE  243 (405)
Q Consensus       181 ~~~~~~g-~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~  243 (405)
                       ..+..+ .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.  +++++|+.
T Consensus        63 -~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~--~~v~~Lls  123 (125)
T d1bi7b_          63 -CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR--DVARYLRA  123 (125)
T ss_dssp             -CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHSS
T ss_pred             -cccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCH--HHHHHHHh
Confidence             555555 5799999999999999999999999999999999999999999999  99998864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.2e-24  Score=185.36  Aligned_cols=192  Identities=18%  Similarity=0.158  Sum_probs=115.9

Q ss_pred             cccccc-cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCC------
Q 040751           93 SLLLQV-NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN------  165 (405)
Q Consensus        93 ~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~------  165 (405)
                      .+++.. |..|+||||+||..|+.++|++|+++|++++                  .+|..|+||||.|+..++      
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~------------------~~d~~G~TpL~~A~~~~~~~~~~~  158 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL------------------YGDNMGESCLVKAVKSVNNYDSGT  158 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------BCCTTCCCHHHHHHHSSHHHHTTC
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------------cCCcccccHHHHhhhcccchhhhh
Confidence            345543 8889999999999999999999999998854                  788899999999997664      


Q ss_pred             -HHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHH
Q 040751          166 -VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRS----SDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRK  240 (405)
Q Consensus       166 -~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~  240 (405)
                       .++++++..   .+. ..+..|+||||+++..+.    ...+++.++                           .++.+
T Consensus       159 ~~~ll~~l~~---~~~-~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~  207 (301)
T d1sw6a_         159 FEALLDYLYP---CLI-LEDSMNRTILHHIIITSGMTGCSAAAKYYLD---------------------------ILMGW  207 (301)
T ss_dssp             HHHHHHHHGG---GGG-EECTTCCCHHHHHHHHHTSTTCHHHHHHHHH---------------------------HHHHH
T ss_pred             HHHHHHHHhh---hhh-hcccccCCHHHHHHHHhCccccHHHHHHHHH---------------------------HHHHH
Confidence             234444432   222 456778888888775432    333332221                           23334


Q ss_pred             HHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHH
Q 040751          241 LLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII  320 (405)
Q Consensus       241 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  320 (405)
                      +..............+.++++.+...........+    ....++...   .+..+ ..|+||||+|++.|+.+++++|+
T Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---in~~D-~~G~TpLh~A~~~g~~~iv~~Ll  279 (301)
T d1sw6a_         208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL----DLKWIIANM---LNAQD-SNGDTCLNIAARLGNISIVDALL  279 (301)
T ss_dssp             HHHGGGCCEEEC----------------CHHHHHC----SHHHHHHHT---TTCCC-TTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHhcCCcchhcccccccchhHHHHhcchHHHHHHH----hhHHHHhcC---ccCCC-CCCCCHHHHHHHcCCHHHHHHHH
Confidence            44444333333334444444444333311111100    122222221   12233 48999999999999999999999


Q ss_pred             hcCCcccccccCCCChHHHHHH
Q 040751          321 SKNPECYELVDNRGWNFLHYAV  342 (405)
Q Consensus       321 ~~~~~~~~~~~~~g~t~l~~a~  342 (405)
                      ++|+++ +.+|+.|+|||++|+
T Consensus       280 ~~GAd~-~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         280 DYGADP-FIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTCCT-TCCCTTSCCGGGGTC
T ss_pred             HCCCCC-CCCCCCCCCHHHHcC
Confidence            999997 778888888888874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.1e-24  Score=158.83  Aligned_cols=107  Identities=24%  Similarity=0.257  Sum_probs=99.7

Q ss_pred             ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccc
Q 040751          103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS  182 (405)
Q Consensus       103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~  182 (405)
                      .|||.+|++.|+.++|++|+++|++++                  .++..|.||||+|+..|+.+++++|+++|++++ .
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n------------------~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN------------------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-A   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC------------------CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-C
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc------------------cccccccccccccccccccccccccccccceee-e
Confidence            389999999999999999999998854                  788899999999999999999999999999988 7


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 040751          183 ANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAA  228 (405)
Q Consensus       183 ~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~  228 (405)
                      ++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|.
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            8899999999999999999999999999999999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=153.36  Aligned_cols=121  Identities=25%  Similarity=0.257  Sum_probs=109.6

Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA  183 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~  183 (405)
                      ++|+.|+..|+.++|++|+++|++++                  .+|.+|.||||+|+..|+.+++++|++.|++++ ..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n------------------~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~   63 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS------------------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AA   63 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc------------------ccccccccccccccccccccccccccccccccc-cc
Confidence            68999999999999999999999865                  889999999999999999999999999999988 78


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCcHHHHH--HhcCCccHHHHHHHHHhh
Q 040751          184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP-NGKTALHAA--AMKFDLVDTALRKLLEKK  245 (405)
Q Consensus       184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~a--~~~~~~~~~~v~~Ll~~~  245 (405)
                      +..|+||||+|+..|+.+++++|+++|++++..+. .+.||++.+  +..|+.  +++++|+...
T Consensus        64 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~--eiv~~L~~~~  126 (130)
T d1ycsb1          64 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT--QCSQFLYGVQ  126 (130)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC--CHHHHHHHHH
T ss_pred             cccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChH--HHHHHHHhHH
Confidence            99999999999999999999999999999997664 578876655  567888  9999998754

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=9.5e-23  Score=150.69  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=92.0

Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc------------ccccccCCCCCHHHHHHHhCCcH
Q 040751          302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRRNE  369 (405)
Q Consensus       302 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~  369 (405)
                      |||++|++.|+.+++++|+++|+++ +.++..|+||||+|+.+++            +++.+|..|+||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            7999999999999999999999887 7889999999999998888            68899999999999999999999


Q ss_pred             HHHHHHhccccccccccCCCCchhhhhhccccc
Q 040751          370 FYDVMIRNTQVNYDAVNKQNVSVEHILDYEHIL  402 (405)
Q Consensus       370 ~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~  402 (405)
                      ++++|+++ |+|++.+|..|+||+|+|..+..+
T Consensus        83 ~v~~Ll~~-Gad~~~~d~~G~t~l~~a~~~~i~  114 (118)
T d1myoa_          83 CVKLLLSK-GADKTVKGPDGLTALEATDNQAIK  114 (118)
T ss_dssp             HHHHHHTT-CCCSSSSSSSTCCCCCTCSSTTTG
T ss_pred             hhhhhhcc-cccceeeCCCCCCHHHHHhHHHHH
Confidence            99999998 999999999999999999766544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.4e-23  Score=153.05  Aligned_cols=120  Identities=16%  Similarity=0.201  Sum_probs=81.5

Q ss_pred             ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751           63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA  142 (405)
Q Consensus        63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~  142 (405)
                      +.++||+|  +..|+.+++++|++    .+.+++..+..|.||||.|+ .|+.+++++|+++|++++             
T Consensus         3 ~~~~L~~A--a~~G~~~~v~~Ll~----~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-------------   62 (125)
T d1bi7b_           3 SADWLATA--AARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-------------   62 (125)
T ss_dssp             STTHHHHH--HHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-------------
T ss_pred             ChhHHHHH--HHCCCHHHHHHHHH----cCCccccccccccccccccc-cccccccccccccccccc-------------
Confidence            45667777  77777777777655    34556666777777776554 567777777777776643             


Q ss_pred             HHHhhhccCCCc-hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 040751          143 RQMIKMTNNEKN-TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE  208 (405)
Q Consensus       143 ~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~  208 (405)
                           ..+..+. ||||+|+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|++
T Consensus        63 -----~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          63 -----CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             -----CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             -----cccccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                 4555444 57777777777777777777777766 567777777777777777777777653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.1e-22  Score=149.43  Aligned_cols=121  Identities=25%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             chhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHH
Q 040751           65 TILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ  144 (405)
Q Consensus        65 ~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  144 (405)
                      ++|+.|  +..|+.+++++|++    .+.+++..|.+|+||||+|+..|+.+++++|+++|++.                
T Consensus         3 ~lL~~A--~~~G~~~~v~~Ll~----~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~----------------   60 (130)
T d1ycsb1           3 ALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----------------   60 (130)
T ss_dssp             HHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT----------------
T ss_pred             HHHHHH--HHcCCHHHHHHHHH----cCCCcccccccccccccccccccccccccccccccccc----------------
Confidence            567777  77888777777765    35667777888888888888888888888888887774                


Q ss_pred             HhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHc
Q 040751          145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMA--AESRSSDMVLALLEN  209 (405)
Q Consensus       145 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a--~~~~~~~~v~~Ll~~  209 (405)
                        +..|.+|.||||+|+..|+.+++++|+++|++++......+.||++++  +..|+.+++++|+..
T Consensus        61 --~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          61 --NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             --TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             --ccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence              367778888888888888888888888888887733344577776655  456778888888754

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.3e-20  Score=145.22  Aligned_cols=130  Identities=17%  Similarity=0.117  Sum_probs=112.0

Q ss_pred             hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcCCCCc
Q 040751          104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKEDPDYR  180 (405)
Q Consensus       104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~  180 (405)
                      ..|+.|++.++...+..++..|.+......            ....+..|.||||+|++.   +..+++++|+++|++++
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin   75 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIP------------LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD   75 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCC------------CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCC------------cccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh
Confidence            356788999999999999999876531100            112366799999999974   67899999999999998


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751          181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL  248 (405)
Q Consensus       181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~  248 (405)
                       ..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.  +++++|++.....
T Consensus        76 -~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~--~i~~~L~~~~~~~  140 (154)
T d1dcqa1          76 -KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE--HCEELLTQALSGR  140 (154)
T ss_dssp             -CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHTTC
T ss_pred             -hhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCH--HHHHHHHHhCCCC
Confidence             7899999999999999999999999999999999999999999999999999  9999999876543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.8e-20  Score=142.08  Aligned_cols=97  Identities=25%  Similarity=0.317  Sum_probs=88.6

Q ss_pred             cccCCCChHHHHHHHh---CcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751           97 QVNAKGDTPLHVAAKF---GHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT  173 (405)
Q Consensus        97 ~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  173 (405)
                      ..+..|+||||+|+..   |+.++|++|+++|+++                  +.+|..|.||||+|+..|+.+++++|+
T Consensus        40 ~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi------------------n~~d~~g~TpLh~A~~~~~~~~v~~Ll  101 (154)
T d1dcqa1          40 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL------------------DKQTGKGSTALHYCCLTDNAECLKLLL  101 (154)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh------------------hhhhhhhcccccccccccccccccccc
Confidence            3467799999999985   6789999999999985                  488999999999999999999999999


Q ss_pred             hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751          174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS  212 (405)
Q Consensus       174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~  212 (405)
                      ++|++++ ..+..|.||||+|+..|+.+++++|++.+..
T Consensus       102 ~~gad~~-~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         102 RGKASIE-IANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccCcccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999998 7899999999999999999999999997754