Citrus Sinensis ID: 040779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300
Protein Sequence
ALVCLRAWLLAVAGQNRPEQNTAESGMSFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTEDLD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccccccccccccccEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEccccEEcccEEEccccEEccccEEcccEEEEcccEEccccEEcccccccccccccEEcccccEEEEccEEcccccccccccccEEEEEEccccEEEEEEEEEccccccccEEEccccEEcEEccEEcccEEcccEEEEcccEEEEEEEEcccEEEcccEEEEEcEEEccHHHccccccccccccccEEEcccccEEEcccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccHHHHHHHHccEEEEccccHHHHHHHHHccHHHHccccHHHHHHHHHHHcccccccccEEEEccccEEcccEEEccEEEEcccEEEccccEEccEEEEEcccEEcccEEEEcccEEcccccccEEEccccEEEEEEEEccccccccccccccEEEEEccccEEEEEEEEEcccccccEEEEccccEEEEEEEEEcccEEcccEEEEcccEEccEEEEccEEEEEcHHEEEEEEEEccHEEEccHHHEccccccEEEEcccccccccEcHHHHHcccccHHHHHc
Coil and Loop (DISEMBL)
ALVCLRAWLLAVagqnrpeqntaeSGMSFLLLKVRRPCLSSLSTLFLRRLSTalphvygdkyetssssssfihptsivhpnaiigqgvsvgpfctigsaaklgdgcllypsshifgntelgdhcilmtgavvgddlpgqtvfgcnniighHAVVGVKcqdmkyksgdecfvdvgnnnefrEHVSIhrssksgdrtvigdnnlimgschiahdckignynifanntlLAGHVVVEDYTHTAGAIVIHQFchigshsfigggsvvsqdvpkysmvagERAVLRGLNleglrrrgfnvtedld
Flexible Loop (DISEMBL)
ALVCLRAWLLAvagqnrpeqntaESGMSFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHvsihrssksgdrtvIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERavlrglnleglrrrgfnvtedld
Low Complexity Region (SEG)
ALVCLRAWLLAVAGQNRPEQNTAESGMSFLLLKVRRPClsslstlflrrlstalPHVYGDKYETssssssFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFChigshsfigggsvvsQDVPKYSMVAGERAVlrglnleglrrrgFNVTEDLD
Disordered region (IsUnstruct)
*LVCLRAWLLAVAG************MSFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKY********FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSI********RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR*********
Disordered Region (DISOPRED)
ALVCLRAWLLAVA**************SFLLLKVRRPCLSSLSTLF****************************TSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRG********
Disordered Region (DISEMBL)
ALVCLRAWLLAVAGQNRPEQNTAESGMSFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGD**********FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTEDLD
Disordered Region (DISPRO)
ALVCLRAWLLAVAGQNRPEQNTAESGMSFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ALVCLRAWLLAVAGQNRPEQNTAESGMSFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTEDLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	300	2.2.26 [Sep-21-2011]
Q9SU91	336	Probable acyl-[acyl-carri	yes	no	0.876	0.782	0.741	1e-110
B5YHC0	258	Acyl-[acyl-carrier-protei	yes	no	0.666	0.775	0.473	2e-46
B2VHX8	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.438	7e-45
B2ULY0	259	Acyl-[acyl-carrier-protei	yes	no	0.68	0.787	0.434	2e-44
B1JQH2	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.434	3e-44
Q667K1	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.434	3e-44
A4TL79	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.434	3e-44
Q1CFF9	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.434	3e-44
A9R384	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.434	3e-44
Q8ZH56	262	Acyl-[acyl-carrier-protei	yes	no	0.68	0.778	0.434	3e-44

>sp|Q9SU91|LPXA_ARATH Probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial OS=Arabidopsis thaliana GN=LPXA PE=1 SV=1

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/267 (74%), Positives = 223/267 (83%), Gaps = 4/267 (1%)

Query: 31  LLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSV 90
           LLK R   LS L +  +RRLS++         E S  S   IHP+++VHPNA+IG+GVSV
Sbjct: 4   LLKAREKLLSPLVSSTIRRLSSS----LSYSREDSRDSEVLIHPSAVVHPNAVIGKGVSV 59

Query: 91  GPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH 150
           GP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ C+LMTGAVVGD+LPG T  GCNNIIGH
Sbjct: 60  GPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 119

Query: 151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA 210
           HAVVGVKCQD+KYK GDECF+ +GNNNE RE  SIHRSSK  D+TVIGDNNLIMGSCHIA
Sbjct: 120 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIA 179

Query: 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY 270
           HDCKIG+ NIFANNTLLAGHVVVED THTAGA V+HQFCHIGS +FIGGGSVVSQDVPKY
Sbjct: 180 HDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKY 239

Query: 271 SMVAGERAVLRGLNLEGLRRRGFNVTE 297
            MVAGERA LRGLNLEGLRR GF ++E
Sbjct: 240 MMVAGERAELRGLNLEGLRRNGFTMSE 266

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2EC: 9

>sp|B5YHC0|LPXA_THEYD Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=lpxA PE=3 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 133/224 (59%), Gaps = 24/224 (10%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IH T+I+ P A I + V +GP+C IG   K+G G  L     I G TE+G +C       
Sbjct: 4   IHKTAIISPKAEIDKEVVIGPYCIIGDNVKIGRGTRLINHVQIEGITEIGQNC------- 56

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
                   T+F    I       G   QD+KYK G+   V +GNNN  RE+V+IHR+S +
Sbjct: 57  --------TIFPFTTI-------GFPPQDIKYK-GEPTGVKIGNNNTIREYVTIHRASVA 100

Query: 192 GD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250
           GD  TVIGD+N IM   HIAHDCKIGN  I AN   LAGHV VED+    G + IHQF  
Sbjct: 101 GDGWTVIGDSNFIMAYVHIAHDCKIGNSVIMANLATLAGHVQVEDFAFIGGLVAIHQFTR 160

Query: 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           IG+++ IGG S V QDVP ++M +G RA L GLN  GL+RRGF+
Sbjct: 161 IGAYAMIGGFSGVGQDVPPFTMASGPRAKLYGLNSVGLKRRGFS 204

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|B2VHX8|LPXA_ERWT9 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=lpxA PE=3 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 100/228 (43%), Positives = 135/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
           S++ IHPTSIV   A+IG GV +GPFC IG+   +G+G  L   SHI  N          
Sbjct: 4   STAVIHPTSIVEDGAVIGAGVQIGPFCVIGANVSIGEGTTL--KSHIVVN---------- 51

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  G +N +   A +G   QD+KY +G+   V++G+ N  RE V+IHR
Sbjct: 52  ----------GHTRIGKDNTVYQFASIGEANQDLKY-AGEPTRVEIGDRNRIRESVTIHR 100

Query: 188 SSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +   D  T +GD+NL+M + H+AHDC +GN+ I ANN  LAGHV+V+DY    G   +H
Sbjct: 101 GTVQSDGVTRVGDDNLLMVNAHVAHDCVVGNHCILANNATLAGHVIVDDYAIIGGMTAVH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S V+QDVP Y +  G  A   G+NL GL+RRGF+
Sbjct: 161 QFCTIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGINLIGLQRRGFS 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|B2ULY0|LPXA_AKKM8 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=lpxA PE=3 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 137/228 (60%), Gaps = 24/228 (10%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT++VHP A I   V +GPFC +G   KLG GC+L+  SH+                 
Sbjct: 4   IHPTAVVHPAAEIADDVKIGPFCVVGEHVKLGPGCVLH--SHVV---------------- 45

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
               + G + FG  N     +V+G+K QD+KYK G+  +++VG+NN FRE+ +I+R++  
Sbjct: 46  ----IDGPSSFGSGNEFFPFSVIGLKSQDLKYK-GEPTYLEVGDNNVFRENATINRATDI 100

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251
           G  T IG+NNL + SCH  HDC+IGN+ IF+     AGHV V DY   AG   +HQF  I
Sbjct: 101 GGATRIGNNNLFLVSCHAGHDCQIGNHVIFSGFATAAGHVTVGDYAILAGCCAVHQFVSI 160

Query: 252 GSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTEDL 299
           G H+ +G  + VSQDV  Y++V G  AV R +N  G++RRGF+  EDL
Sbjct: 161 GEHAMVGAMARVSQDVLPYTIVEGHPAVTRSVNSIGMQRRGFS-EEDL 207

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Akkermansia muciniphila (strain ATCC BAA-835) (taxid: 349741)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|B1JQH2|LPXA_YERPY Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lpxA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
            ++FIHP+SIV   AIIG GV +GPFC +GS  ++G G            TEL  H ++ 
Sbjct: 4   KTAFIHPSSIVEEGAIIGAGVYIGPFCIVGSQVEIGAG------------TELKSHVVV- 50

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  GC+N I   A +G   QD+KY +G+   V+VG+ N  RE V+IHR
Sbjct: 51  ---------NGITKIGCDNQIYQFASIGEANQDLKY-AGEPTRVEVGDRNRIRESVTIHR 100

Query: 188 -SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +++ G  T +G +NL+M + H+AHDC IGN  I ANN  L GHV ++DY    G   IH
Sbjct: 101 GTTQGGGVTKVGCDNLLMVNTHVAHDCVIGNRCILANNAALGGHVEIDDYAIIGGMTAIH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S ++QDVP + +  G  A   G+N+EGL+RRGF+
Sbjct: 161 QFCVIGAHVMVGGCSGITQDVPPFVIAQGNHATPFGINIEGLKRRGFD 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|Q667K1|LPXA_YERPS Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=lpxA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
            ++FIHP+SIV   AIIG GV +GPFC +GS  ++G G            TEL  H ++ 
Sbjct: 4   KTAFIHPSSIVEEGAIIGAGVYIGPFCIVGSQVEIGAG------------TELKSHVVV- 50

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  GC+N I   A +G   QD+KY +G+   V+VG+ N  RE V+IHR
Sbjct: 51  ---------NGITKIGCDNQIYQFASIGEANQDLKY-AGEPTRVEVGDRNRIRESVTIHR 100

Query: 188 -SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +++ G  T +G +NL+M + H+AHDC IGN  I ANN  L GHV ++DY    G   IH
Sbjct: 101 GTTQGGGVTKVGCDNLLMVNTHVAHDCVIGNRCILANNAALGGHVEIDDYAIIGGMTAIH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S ++QDVP + +  G  A   G+N+EGL+RRGF+
Sbjct: 161 QFCVIGAHVMVGGCSGITQDVPPFVIAQGNHATPFGINIEGLKRRGFD 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Yersinia pseudotuberculosis (taxid: 633)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|A4TL79|LPXA_YERPP Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Yersinia pestis (strain Pestoides F) GN=lpxA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
            ++FIHP+SIV   AIIG GV +GPFC +GS  ++G G            TEL  H ++ 
Sbjct: 4   KTAFIHPSSIVEEGAIIGAGVYIGPFCIVGSQVEIGAG------------TELKSHVVV- 50

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  GC+N I   A +G   QD+KY +G+   V+VG+ N  RE V+IHR
Sbjct: 51  ---------NGITKIGCDNQIYQFASIGEANQDLKY-AGEPTRVEVGDRNRIRESVTIHR 100

Query: 188 -SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +++ G  T +G +NL+M + H+AHDC IGN  I ANN  L GHV ++DY    G   IH
Sbjct: 101 GTTQGGGVTKVGCDNLLMVNTHVAHDCVIGNRCILANNAALGGHVEIDDYAIIGGMTAIH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S ++QDVP + +  G  A   G+N+EGL+RRGF+
Sbjct: 161 QFCVIGAHVMVGGCSGITQDVPPFVIAQGNHATPFGINIEGLKRRGFD 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Yersinia pestis (strain Pestoides F) (taxid: 386656)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|Q1CFF9|LPXA_YERPN Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lpxA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
            ++FIHP+SIV   AIIG GV +GPFC +GS  ++G G            TEL  H ++ 
Sbjct: 4   KTAFIHPSSIVEEGAIIGAGVYIGPFCIVGSQVEIGAG------------TELKSHVVV- 50

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  GC+N I   A +G   QD+KY +G+   V+VG+ N  RE V+IHR
Sbjct: 51  ---------NGITKIGCDNQIYQFASIGEANQDLKY-AGEPTRVEVGDRNRIRESVTIHR 100

Query: 188 -SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +++ G  T +G +NL+M + H+AHDC IGN  I ANN  L GHV ++DY    G   IH
Sbjct: 101 GTTQGGGVTKVGCDNLLMVNTHVAHDCVIGNRCILANNAALGGHVEIDDYAIIGGMTAIH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S ++QDVP + +  G  A   G+N+EGL+RRGF+
Sbjct: 161 QFCVIGAHVMVGGCSGITQDVPPFVIAQGNHATPFGINIEGLKRRGFD 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Yersinia pestis bv. Antiqua (strain Nepal516) (taxid: 377628)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|A9R384|LPXA_YERPG Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lpxA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
            ++FIHP+SIV   AIIG GV +GPFC +GS  ++G G            TEL  H ++ 
Sbjct: 4   KTAFIHPSSIVEEGAIIGAGVYIGPFCIVGSQVEIGAG------------TELKSHVVV- 50

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  GC+N I   A +G   QD+KY +G+   V+VG+ N  RE V+IHR
Sbjct: 51  ---------NGITKIGCDNQIYQFASIGEANQDLKY-AGEPTRVEVGDRNRIRESVTIHR 100

Query: 188 -SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +++ G  T +G +NL+M + H+AHDC IGN  I ANN  L GHV ++DY    G   IH
Sbjct: 101 GTTQGGGVTKVGCDNLLMVNTHVAHDCVIGNRCILANNAALGGHVEIDDYAIIGGMTAIH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S ++QDVP + +  G  A   G+N+EGL+RRGF+
Sbjct: 161 QFCVIGAHVMVGGCSGITQDVPPFVIAQGNHATPFGINIEGLKRRGFD 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

>sp|Q8ZH56|LPXA_YERPE Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Yersinia pestis GN=lpxA PE=3 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 136/228 (59%), Gaps = 24/228 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
            ++FIHP+SIV   AIIG GV +GPFC +GS  ++G G            TEL  H ++ 
Sbjct: 4   KTAFIHPSSIVEEGAIIGAGVYIGPFCIVGSQVEIGAG------------TELKSHVVV- 50

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  GC+N I   A +G   QD+KY +G+   V+VG+ N  RE V+IHR
Sbjct: 51  ---------NGITKIGCDNQIYQFASIGEANQDLKY-AGEPTRVEVGDRNRIRESVTIHR 100

Query: 188 -SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +++ G  T +G +NL+M + H+AHDC IGN  I ANN  L GHV ++DY    G   IH
Sbjct: 101 GTTQGGGVTKVGCDNLLMVNTHVAHDCVIGNRCILANNAALGGHVEIDDYAIIGGMTAIH 160

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           QFC IG+H  +GG S ++QDVP + +  G  A   G+N+EGL+RRGF+
Sbjct: 161 QFCVIGAHVMVGGCSGITQDVPPFVIAQGNHATPFGINIEGLKRRGFD 208

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Yersinia pestis (taxid: 632)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
255546175	341	Acyl-[acyl-carrier-protein]--UDP-N-acety	0.89	0.782	0.718	1e-111
224088019	365	predicted protein [Populus trichocarpa]	0.78	0.641	0.807	1e-110
359484314	363	PREDICTED: acyl-[acyl-carrier-protein]--	0.76	0.628	0.815	1e-109
297738687	335	unnamed protein product [Vitis vinifera]	0.76	0.680	0.815	1e-109
79325527	336	UDP-N-acetylglucosamine O-acyltransferas	0.876	0.782	0.741	1e-108
30688366	334	UDP-N-acetylglucosamine O-acyltransferas	0.876	0.787	0.741	1e-108
388325673	305	Chain A, Activity And Crystal Structure	0.776	0.763	0.798	1e-107
297803086	336	acyl--UDP-N-acetylglucosamine O-acyltran	0.876	0.782	0.719	1e-106
115439639	327	Os01g0722100 [Oryza sativa Japonica Grou	0.806	0.740	0.690	1e-101
356523129	333	PREDICTED: acyl-[acyl-carrier-protein]--	0.866	0.780	0.688	1e-101

>gi|255546175|ref|XP_002514147.1| Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, putative [Ricinus communis] gi|223546603|gb|EEF48101.1| Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, putative [Ricinus communis]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/270 (71%), Positives = 230/270 (85%), Gaps = 3/270 (1%)

Query: 31  LLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSS---SSSFIHPTSIVHPNAIIGQG 87
           LLK+ +P  S+L +L L R ST+L     +K    +S   + +FIHP++IVHPNA+IGQG
Sbjct: 4   LLKIPKPFFSTLPSLSLHRFSTSLTDSSNNKKTDDASMLQNPTFIHPSAIVHPNALIGQG 63

Query: 88  VSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI 147
           V+VGPFCTIGS AKLG+GC LY +SH+FGN+ELG+ CILMTGAVVGD+LPG+T  G NN+
Sbjct: 64  VAVGPFCTIGSNAKLGNGCQLYTNSHVFGNSELGERCILMTGAVVGDNLPGRTKLGDNNV 123

Query: 148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSC 207
           IG+HAVVGVKCQD+KYK  DECF+++G+NN+ REH SIHRSSKS D+T+IG+NNLIMGSC
Sbjct: 124 IGYHAVVGVKCQDLKYKPWDECFLEIGDNNDIREHASIHRSSKSSDQTIIGNNNLIMGSC 183

Query: 208 HIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV 267
           HIAHDC IGN NIFANNTLLAGHV+VEDYTHTAG IV+HQFCHIGS SFIGGGSVV+QDV
Sbjct: 184 HIAHDCHIGNNNIFANNTLLAGHVIVEDYTHTAGGIVVHQFCHIGSFSFIGGGSVVTQDV 243

Query: 268 PKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297
           PKY+MVAGERA LRGLNLEGLRR GF  T+
Sbjct: 244 PKYAMVAGERAELRGLNLEGLRRNGFTATQ 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

>gi|224088019|ref|XP_002308293.1| predicted protein [Populus trichocarpa] gi|222854269|gb|EEE91816.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/234 (80%), Positives = 211/234 (90%)

Query: 64  TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDH 123
           T+ ++ +FIHP++ VHPNAIIG GVSVGPFCTIGS+ KLG+GC LYP SH+FGNTE+GDH
Sbjct: 64  TADANPNFIHPSTDVHPNAIIGHGVSVGPFCTIGSSVKLGNGCRLYPGSHVFGNTEIGDH 123

Query: 124 CILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV 183
           C+LM GAVVGD LPG+TV GCNN+IGHHAV+GVKCQD+KYK GDECF+ +G+NNE REH 
Sbjct: 124 CLLMPGAVVGDHLPGRTVLGCNNVIGHHAVIGVKCQDLKYKPGDECFLHIGDNNEIREHT 183

Query: 184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAI 243
           SIHRSSKS D+TVIGDNNLIMGSCHIAHDC IGN NIFANNTLLAGHVVVEDYTHTAGAI
Sbjct: 184 SIHRSSKSSDKTVIGDNNLIMGSCHIAHDCNIGNNNIFANNTLLAGHVVVEDYTHTAGAI 243

Query: 244 VIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297
           V+HQFCHIGS SF+GGGSVVSQDVPKY+MV GERA LRGLNLEGLRR GF  TE
Sbjct: 244 VVHQFCHIGSFSFVGGGSVVSQDVPKYTMVVGERAELRGLNLEGLRRNGFTATE 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484314|ref|XP_002282521.2| PREDICTED: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase-like [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/228 (81%), Positives = 207/228 (90%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           SF HPT++VHP+A+IGQGVS+GPFCT+G +AKLGDGC LYP SHIFG+TELG  C+LMTG
Sbjct: 40  SFFHPTAVVHPDAVIGQGVSIGPFCTVGPSAKLGDGCQLYPGSHIFGDTELGKQCVLMTG 99

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           AVVGDDLPG+TV GCNNIIG+HAVVGVKCQDMKYK  DECF+DVG+NNE REH SIHRSS
Sbjct: 100 AVVGDDLPGRTVIGCNNIIGYHAVVGVKCQDMKYKPVDECFLDVGDNNEIREHTSIHRSS 159

Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
            S +RTVIGDNNLIMGSCHIAHDCK+GN NIFANNTLLAGHVVVEDY HTAGA+V+HQFC
Sbjct: 160 MSSERTVIGDNNLIMGSCHIAHDCKLGNNNIFANNTLLAGHVVVEDYAHTAGAVVVHQFC 219

Query: 250 HIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297
            IGS SFIGGGSV+S+DVPKY MV+GERA LRGLN EGLRRRGF+ TE
Sbjct: 220 RIGSFSFIGGGSVLSKDVPKYMMVSGERAELRGLNFEGLRRRGFSDTE 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|297738687|emb|CBI27932.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/228 (81%), Positives = 207/228 (90%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           SF HPT++VHP+A+IGQGVS+GPFCT+G +AKLGDGC LYP SHIFG+TELG  C+LMTG
Sbjct: 40  SFFHPTAVVHPDAVIGQGVSIGPFCTVGPSAKLGDGCQLYPGSHIFGDTELGKQCVLMTG 99

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           AVVGDDLPG+TV GCNNIIG+HAVVGVKCQDMKYK  DECF+DVG+NNE REH SIHRSS
Sbjct: 100 AVVGDDLPGRTVIGCNNIIGYHAVVGVKCQDMKYKPVDECFLDVGDNNEIREHTSIHRSS 159

Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
            S +RTVIGDNNLIMGSCHIAHDCK+GN NIFANNTLLAGHVVVEDY HTAGA+V+HQFC
Sbjct: 160 MSSERTVIGDNNLIMGSCHIAHDCKLGNNNIFANNTLLAGHVVVEDYAHTAGAVVVHQFC 219

Query: 250 HIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297
            IGS SFIGGGSV+S+DVPKY MV+GERA LRGLN EGLRRRGF+ TE
Sbjct: 220 RIGSFSFIGGGSVLSKDVPKYMMVSGERAELRGLNFEGLRRRGFSDTE 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79325527|ref|NP_001031749.1| UDP-N-acetylglucosamine O-acyltransferase domain-containing protein [Arabidopsis thaliana] gi|5123548|emb|CAB45314.1| UDP-N-acetylglucosamine O-acyltransferase-like protein [Arabidopsis thaliana] gi|7269853|emb|CAB79712.1| UDP-N-acetylglucosamine O-acyltransferase-like protein [Arabidopsis thaliana] gi|51969068|dbj|BAD43226.1| UDP-N-acetylglucosamine O-acyltransferase - like protein [Arabidopsis thaliana] gi|332660242|gb|AEE85642.1| UDP-N-acetylglucosamine O-acyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/267 (74%), Positives = 223/267 (83%), Gaps = 4/267 (1%)

Query: 31  LLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSV 90
           LLK R   LS L +  +RRLS++         E S  S   IHP+++VHPNA+IG+GVSV
Sbjct: 4   LLKAREKLLSPLVSSTIRRLSSS----LSYSREDSRDSEVLIHPSAVVHPNAVIGKGVSV 59

Query: 91  GPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH 150
           GP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ C+LMTGAVVGD+LPG T  GCNNIIGH
Sbjct: 60  GPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 119

Query: 151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA 210
           HAVVGVKCQD+KYK GDECF+ +GNNNE RE  SIHRSSK  D+TVIGDNNLIMGSCHIA
Sbjct: 120 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIA 179

Query: 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY 270
           HDCKIG+ NIFANNTLLAGHVVVED THTAGA V+HQFCHIGS +FIGGGSVVSQDVPKY
Sbjct: 180 HDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKY 239

Query: 271 SMVAGERAVLRGLNLEGLRRRGFNVTE 297
            MVAGERA LRGLNLEGLRR GF ++E
Sbjct: 240 MMVAGERAELRGLNLEGLRRNGFTMSE 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688366|ref|NP_194683.2| UDP-N-acetylglucosamine O-acyltransferase domain-containing protein [Arabidopsis thaliana] gi|23296496|gb|AAN13071.1| putative UDP-N-acetylglucosamine O-acyltransferase [Arabidopsis thaliana] gi|332660241|gb|AEE85641.1| UDP-N-acetylglucosamine O-acyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/267 (74%), Positives = 223/267 (83%), Gaps = 4/267 (1%)

Query: 31  LLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSV 90
           LLK R   LS L +  +RRLS++         E S  S   IHP+++VHPNA+IG+GVSV
Sbjct: 4   LLKAREKLLSPLVSSTIRRLSSS----LSYSREDSRDSEVLIHPSAVVHPNAVIGKGVSV 59

Query: 91  GPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH 150
           GP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ C+LMTGAVVGD+LPG T  GCNNIIGH
Sbjct: 60  GPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGH 119

Query: 151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA 210
           HAVVGVKCQD+KYK GDECF+ +GNNNE RE  SIHRSSK  D+TVIGDNNLIMGSCHIA
Sbjct: 120 HAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIA 179

Query: 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY 270
           HDCKIG+ NIFANNTLLAGHVVVED THTAGA V+HQFCHIGS +FIGGGSVVSQDVPKY
Sbjct: 180 HDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKY 239

Query: 271 SMVAGERAVLRGLNLEGLRRRGFNVTE 297
            MVAGERA LRGLNLEGLRR GF ++E
Sbjct: 240 MMVAGERAELRGLNLEGLRRNGFTMSE 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388325673|pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis Udp-N-Acetylglucosamine Acyltransferase

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/233 (79%), Positives = 207/233 (88%)

Query: 65  SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHC 124
           S  S   IHP+++VHPNA+IG+GVSVGP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ C
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESC 62

Query: 125 ILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVS 184
           +LMTGAVVGD+LPG T  GCNNIIGHHAVVGVKCQD+KYK GDECF+ +GNNNE RE  S
Sbjct: 63  VLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCS 122

Query: 185 IHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIV 244
           IHRSSK  D+TVIGDNNLIMGSCHIAHDCKIG+ NIFANNTLLAGHVVVED THTAGA V
Sbjct: 123 IHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASV 182

Query: 245 IHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297
           +HQFCHIGS +FIGGGSVVSQDVPKY MVAGERA LRGLNLEGLRR GF ++E
Sbjct: 183 VHQFCHIGSFAFIGGGSVVSQDVPKYMMVAGERAELRGLNLEGLRRNGFTMSE 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803086|ref|XP_002869427.1| acyl--UDP-N-acetylglucosamine O-acyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297315263|gb|EFH45686.1| acyl--UDP-N-acetylglucosamine O-acyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/267 (71%), Positives = 214/267 (80%), Gaps = 4/267 (1%)

Query: 31  LLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSV 90
           LLK R   LS L           L        E S  S  FIHP+++VHPNA+IG+GVSV
Sbjct: 4   LLKAREKLLSPL----FSSSIQRLSSSLSYSREDSRDSEVFIHPSAVVHPNAVIGKGVSV 59

Query: 91  GPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH 150
           GP+CT+GS+ KLG+GC LYPSSHIFGNTE+G+ C+LMTGAVVGD+LPG T  G NNIIGH
Sbjct: 60  GPYCTVGSSVKLGNGCKLYPSSHIFGNTEMGESCVLMTGAVVGDELPGYTFIGGNNIIGH 119

Query: 151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA 210
           HAVVGVKCQD+KYK GDECF+ +G NNE RE  SIHRSSK  D+TVIGDNNLIMGSCHIA
Sbjct: 120 HAVVGVKCQDLKYKHGDECFLCIGKNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIA 179

Query: 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY 270
           HDCKIG+ NIFANNTLLAGHVVVED THTAGA V+HQFCHIGS +FIGGGSVVSQDVPKY
Sbjct: 180 HDCKIGDRNIFANNTLLAGHVVVEDNTHTAGATVVHQFCHIGSFAFIGGGSVVSQDVPKY 239

Query: 271 SMVAGERAVLRGLNLEGLRRRGFNVTE 297
            MV GERA LRGLNLEGLRR GF ++E
Sbjct: 240 MMVTGERAELRGLNLEGLRRNGFTMSE 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115439639|ref|NP_001044099.1| Os01g0722100 [Oryza sativa Japonica Group] gi|57899237|dbj|BAD87406.1| UDP-acetylglucosamine acyltransferase-like [Oryza sativa Japonica Group] gi|57899537|dbj|BAD87051.1| UDP-acetylglucosamine acyltransferase-like [Oryza sativa Japonica Group] gi|113533630|dbj|BAF06013.1| Os01g0722100 [Oryza sativa Japonica Group] gi|215694880|dbj|BAG90071.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 167/242 (69%), Positives = 209/242 (86%)

Query: 56  HVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF 115
           H    +     +++SF+HP ++VHP+A++GQGVS+GPFCT+G++A++GD C L+  SH+ 
Sbjct: 20  HAISSEGAAREAATSFVHPAAVVHPDAVVGQGVSIGPFCTVGASARIGDACQLHAGSHVM 79

Query: 116 GNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGN 175
           G+TELG+ C+++TGA++G D+PGQT+ G NN+IGHHAVVGVKCQD+KYKSGDECF+ +GN
Sbjct: 80  GDTELGERCVVLTGAILGSDIPGQTIIGENNVIGHHAVVGVKCQDLKYKSGDECFLQIGN 139

Query: 176 NNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVED 235
           NNE RE+ SIHRSSKS D TVIGDNNLIMGSCHIAHDC+IGN NIFANNTL AGHVVVED
Sbjct: 140 NNEIREYCSIHRSSKSCDCTVIGDNNLIMGSCHIAHDCRIGNNNIFANNTLFAGHVVVED 199

Query: 236 YTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNV 295
            THTAGA+V+HQFCHIGS SF+GGGSV++QDVP+Y MVAG+RA LRGLNLEGL+R GF+ 
Sbjct: 200 CTHTAGAVVVHQFCHIGSFSFLGGGSVIAQDVPRYMMVAGDRAELRGLNLEGLKRNGFSD 259

Query: 296 TE 297
            E
Sbjct: 260 QE 261

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523129|ref|XP_003530194.1| PREDICTED: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase-like [Glycine max]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/263 (68%), Positives = 212/263 (80%), Gaps = 3/263 (1%)

Query: 38  CLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSF---IHPTSIVHPNAIIGQGVSVGPFC 94
           CL  + T     LS+AL       +   +    F   IHPT++VHPNA+IGQGVS+GPFC
Sbjct: 3   CLRKVGTRSHFSLSSALHQSQPRSFSYVADGERFDSCIHPTAVVHPNAVIGQGVSIGPFC 62

Query: 95  TIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154
           ++ S+AKLG+GC L+P SH+FG+TELGD+C+LMTGAVVGDD PG TV G NN IG+HAV+
Sbjct: 63  SVSSSAKLGNGCQLHPGSHVFGSTELGDNCMLMTGAVVGDDYPGCTVIGSNNTIGYHAVI 122

Query: 155 GVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCK 214
           GVKCQDMKYK  DEC+++VG+NN+ REH SIHRSSKS DRTVIG+ N IMGSCHIAHDCK
Sbjct: 123 GVKCQDMKYKPEDECYLEVGHNNDIREHTSIHRSSKSTDRTVIGNANFIMGSCHIAHDCK 182

Query: 215 IGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA 274
           IGN NIFANNTLLAGHV VEDY HTAGA V+HQFCH+GS SF+GGGSVVSQDVPKY MVA
Sbjct: 183 IGNNNIFANNTLLAGHVEVEDYVHTAGATVVHQFCHLGSFSFLGGGSVVSQDVPKYMMVA 242

Query: 275 GERAVLRGLNLEGLRRRGFNVTE 297
           GERA LRGLN+ GL R GF++ E
Sbjct: 243 GERAELRGLNVVGLTRCGFSIAE 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	300
TAIR|locus:2134368	336	LpxA "AT4G29540" [Arabidopsis	0.69	0.616	0.758	2.9e-87
UNIPROTKB|P0A722	262	lpxA [Escherichia coli K-12 (t	0.616	0.706	0.373	8.8e-31
TIGR_CMR|SO_1641	256	SO_1641 "acyl-(acyl-carrier-pr	0.583	0.683	0.408	2.1e-29
UNIPROTKB|Q9KPW4	262	lpxA "Acyl-[acyl-carrier-prote	0.6	0.687	0.383	4.4e-29
TIGR_CMR|VC_2248	262	VC_2248 "acyl-(acyl-carrier-pr	0.6	0.687	0.383	4.4e-29
TIGR_CMR|GSU_0999	269	GSU_0999 "acyl-(acyl-carrier-p	0.6	0.669	0.378	7.1e-29
TIGR_CMR|CPS_1565	256	CPS_1565 "acyl-(acyl-carrier-p	0.616	0.722	0.354	3.1e-28
TIGR_CMR|CBU_0615	259	CBU_0615 "acyl-(acyl-carrier-p	0.616	0.714	0.358	4e-26
TIGR_CMR|GSU_2264	256	GSU_2264 "acyl-(acyl-carrier-p	0.613	0.718	0.344	2.2e-25
TIGR_CMR|CJE_0323	263	CJE_0323 "acyl-(acyl-carrier-p	0.616	0.703	0.336	2e-24

TAIR|locus:2134368 LpxA "AT4G29540" [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 157/207 (75%), Positives = 175/207 (84%)

Query:    72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
             IHP+++VHPNA+IG+GVSVGP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ C+LMTGAV
Sbjct:    41 IHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAV 100

Query:   132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
             VGD+LPG T  GCNNIIGHHAVVGVKCQD+KYK GDECF+ +GNNNE RE  SIHRSSK 
Sbjct:   101 VGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKP 160

Query:   192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXX 251
              D+TVIGDNNLIMGSCHIAHDCKIG+ NIFANNTLLAGHVVVED THTAGA V+HQFC  
Sbjct:   161 SDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHI 220

Query:   252 XXXXXXXXXXXXXQDVPKYSMVAGERA 278
                          QDVPKY MVAGERA
Sbjct:   221 GSFAFIGGGSVVSQDVPKYMMVAGERA 247

GO:0005739 "mitochondrion" evidence=IDA

GO:2001289 "lipid X metabolic process" evidence=IMP

GO:0008780 "acyl-[acyl-carrier-protein

GO:0019408 "dolichol biosynthetic process" evidence=RCA

UNIPROTKB|P0A722 lpxA [Escherichia coli K-12 (taxid:83333)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 78/209 (37%), Positives = 107/209 (51%)

Query:    71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
             F+HPT+IV   A IG    +GPFC +G   ++G+G +L   SH+  N             
Sbjct:     7 FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL--KSHVVVN------------- 51

Query:   131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS- 189
                    G T  G +N I   A +G   QD+KY +G+   V++G+ N  RE V+IHR + 
Sbjct:    52 -------GHTKIGRDNEIYQFASIGEVNQDLKY-AGEPTRVEIGDRNRIRESVTIHRGTV 103

Query:   190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
             + G  T +G +NL+M + HIAHDC +GN  I ANN  LAGHV V+D+    G   +HQFC
Sbjct:   104 QGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFC 163

Query:   250 XXXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                            QDVP Y +  G  A
Sbjct:   164 IIGAHVMVGGCSGVAQDVPPYVIAQGNHA 192

GO:0008780 "acyl-[acyl-carrier-protein

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0009245 "lipid A biosynthetic process" evidence=IEA

TIGR_CMR|SO_1641 SO_1641 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 74/181 (40%), Positives = 96/181 (53%)

Query:   100 AKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQ 159
             AK+G    + P S++    E+GD C L +  VV     G TV G  N I   A VG +CQ
Sbjct:    12 AKIGKNVTIGPWSYVGAGVEIGDDCWLSSHVVV----KGPTVIGKGNRIFQFASVGEECQ 67

Query:   160 DMKYKSGDECFVDVGNNNEFREHVSIHRSS-KSGDRTVIGDNNLIMGSCHIAHDCKIGNY 218
             D KY +G+   + +G+NN  REHV+IHR + +    T IG NNL M   HIAHDC +GN 
Sbjct:    68 DKKY-AGEPTRLIIGDNNVIREHVTIHRGTVQDNSETRIGSNNLFMNYVHIAHDCVVGNN 126

Query:   219 NIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXXXXXXXXXXXXXXXQDVPKYSMVAGERA 278
              I ANN  +AGHV V D+    G   +HQF                QDVP + M AG+ A
Sbjct:   127 VIMANNASIAGHVHVGDWAILGGMTGVHQFVHIGAHAFTAGCSLLLQDVPPFVMAAGQPA 186

Query:   279 V 279
             +
Sbjct:   187 I 187

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPW4 lpxA "Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 79/206 (38%), Positives = 106/206 (51%)

Query:    72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
             IHPTS+V   AIIG  V +GPFC + S  ++G+G            TEL  H ++     
Sbjct:     8 IHPTSVVEEGAIIGANVKIGPFCFVDSKVEIGEG------------TELLSHVVVK---- 51

Query:   132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
                   G T  G  N I   A +G  CQD+KY +G++  + +G+ N  RE V++HR +  
Sbjct:    52 ------GPTKIGRFNRIFQFASIGEACQDLKY-AGEDTQLIIGDRNTIRESVTMHRGTVQ 104

Query:   192 GDR--TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
              D+  T++G +NL M + H+AHDC IG+  IFANN  LAGHV V +     G   IHQFC
Sbjct:   105 -DKGITIVGSDNLFMINAHVAHDCVIGDRCIFANNATLAGHVKVGNQAIVGGMSAIHQFC 163

Query:   250 XXXXXXXXXXXXXXXQDVPKYSMVAG 275
                            QDVP Y M  G
Sbjct:   164 HIGDHCMLGGGSIVVQDVPPYVMAQG 189

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|VC_2248 VC_2248 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 79/206 (38%), Positives = 106/206 (51%)

Query:    72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
             IHPTS+V   AIIG  V +GPFC + S  ++G+G            TEL  H ++     
Sbjct:     8 IHPTSVVEEGAIIGANVKIGPFCFVDSKVEIGEG------------TELLSHVVVK---- 51

Query:   132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
                   G T  G  N I   A +G  CQD+KY +G++  + +G+ N  RE V++HR +  
Sbjct:    52 ------GPTKIGRFNRIFQFASIGEACQDLKY-AGEDTQLIIGDRNTIRESVTMHRGTVQ 104

Query:   192 GDR--TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
              D+  T++G +NL M + H+AHDC IG+  IFANN  LAGHV V +     G   IHQFC
Sbjct:   105 -DKGITIVGSDNLFMINAHVAHDCVIGDRCIFANNATLAGHVKVGNQAIVGGMSAIHQFC 163

Query:   250 XXXXXXXXXXXXXXXQDVPKYSMVAG 275
                            QDVP Y M  G
Sbjct:   164 HIGDHCMLGGGSIVVQDVPPYVMAQG 189

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0999 GSU_0999 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 70/185 (37%), Positives = 103/185 (55%)

Query:    89 SVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII 148
             ++ P   I  +A + DG  + P+  +  ++ +G    +M  AV+G   P  T  G NN+I
Sbjct:     4 NIHPTAHISPSATIADGAEIGPNVIVGDHSSIGAGTRVMANAVIG---PW-TQIGENNVI 59

Query:   149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCH 208
                A+VG   QD  YK G+E +  VGN N  RE+V+IHR ++ G +T+IG NNL M   H
Sbjct:    60 HFGAIVGHDPQDFGYK-GEESWTIVGNGNVIREYVTIHRGNRPGTKTMIGSNNLFMAHSH 118

Query:   209 IAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXXXXXXXXXXXXXXXQDVP 268
             +AH+C++G+  I  N  LLAGHVVVED    +G  V+HQFC               +DVP
Sbjct:   119 VAHNCELGSNIILVNGALLAGHVVVEDRVIISGNSVVHQFCRIGTFAMMRGLSRSSRDVP 178

Query:   269 KYSMV 273
              + ++
Sbjct:   179 PFCIM 183

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CPS_1565 CPS_1565 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 72/203 (35%), Positives = 105/203 (51%)

Query:    77 IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL 136
             ++HP AII  G  +G   +IG            P ++I  N  +GD+C + +  V+    
Sbjct:     1 MIHPQAIIEPGAVIGKNVSIG------------PWTYIASNVVIGDNCEISSHVVIN--- 45

Query:   137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS-KSGDRT 195
              G +  G  N I   A +G  CQD+KY  G+   + +G+NN FRE  ++HR + +    T
Sbjct:    46 -GPSRIGKGNRIFQFASIGEDCQDIKY-DGEPTELIIGDNNTFRESCTVHRGTIQDNSIT 103

Query:   196 VIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXXXXXX 255
              IG NNL M   H+AHDC +G++ IFANN  +AGHV V D+    G + +HQFC      
Sbjct:   104 QIGSNNLFMAYTHVAHDCIVGSHCIFANNASIAGHVHVGDHAIIGGMVGVHQFCHIGAHS 163

Query:   256 XXXXXXXXXQDVPKYSMVAGERA 278
                      +DVP Y M +G+ A
Sbjct:   164 FIAGNALILKDVPAYVMASGQPA 186

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0615 CBU_0615 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 75/209 (35%), Positives = 103/209 (49%)

Query:    72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
             I   +I+HP+A IG  V++GP+  I   A +GDG            TE+  H ++     
Sbjct:     2 IDERAIIHPSATIGSNVTIGPWTLIKENAIIGDG------------TEIAAHVVI----- 44

Query:   132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
                     T+ G  N I  +A VG   Q + YK G+E  ++VG+NN  RE V+I+R +K 
Sbjct:    45 -----DRNTILGKKNKIYSYACVGSDPQHLGYK-GEESCLEVGDNNVIREFVTINRGTKE 98

Query:   192 GDR-TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCX 250
             G   T IGDNN +M   H+AHDC +GN  IFAN   +AGHV V D+        +HQFC 
Sbjct:    99 GHSVTRIGDNNYLMAYSHVAHDCVVGNNVIFANTASIAGHVSVGDHAILGAFSGVHQFCR 158

Query:   251 XXXXXXXXXXXXXXQDVPKYSMVAGERAV 279
                           QD+  Y +V G   V
Sbjct:   159 VGAYCFLGRAAKVYQDILPYMLVTGNPGV 187

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|GSU_2264 GSU_2264 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 71/206 (34%), Positives = 104/206 (50%)

Query:    77 IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHI-FGN-TELGDHCILMTGAVVGD 134
             ++HP AI+  G  +     IG    +G        +H+  G  T +G H ++     +G+
Sbjct:     1 MIHPTAIVHPGAEIAEGVEIGPYVIIG--------AHVRIGRGTTVGPHTVIDGWTEIGE 52

Query:   135 DLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-D 193
             D         N I    +V G+  QD+KY+ G+E ++ +GN N  RE  ++   + +G  
Sbjct:    53 D---------NRIFNMASVGGIP-QDLKYR-GEETWLRIGNRNVIREFTTLQPGTVTGIG 101

Query:   194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXXXX 253
              TVIGD+NL M  CH+AHDC IGN  I AN + LAGHVVVED+    G   +HQF     
Sbjct:   102 ETVIGDDNLFMAYCHVAHDCVIGNRVIMANGSTLAGHVVVEDFAILGGLSAVHQFVRVGE 161

Query:   254 XXXXXXXXXXXQDVPKYSMVAGERAV 279
                        QDV  +++ +G RAV
Sbjct:   162 SAMLSGGAMVVQDVLPFTIASGNRAV 187

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CJE_0323 CJE_0323 "acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 64/190 (33%), Positives = 96/190 (50%)

Query:    90 VGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG 149
             + P   I   A+LGD  ++   +++  + ++G++ ++  GA +  D    T  G ++ + 
Sbjct:     4 IHPSAVIEEGAQLGDDVVVEAYAYVSKDAKIGNNVVIKQGARILSD----TTIGDHSRVF 59

Query:   150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDR-TVIGDNNLIMGSCH 208
              +A+VG   QD+ YK   +  V +G N   RE  +I+  +  GD  T IGDN  IM  CH
Sbjct:    60 SYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCH 119

Query:   209 IAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXXXXXXXXXXXXXXXQDVP 268
             IAHDC +GN  I ANN  LAGHV + D+T   G   IHQF                QD+ 
Sbjct:   120 IAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIV 179

Query:   269 KYSMVAGERA 278
              + +  G RA
Sbjct:   180 PFCLAEGNRA 189

GO:0008780 "acyl-[acyl-carrier-protein

GO:0009245 "lipid A biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SU91	LPXA_ARATH	2, ., 3, ., 1, ., 1, 2, 9	0.7415	0.8766	0.7827	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.766
3rd Layer	2.3.1.129	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VI0968	hypothetical protein (365 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.X.6418.1	hypothetical protein (277 aa)	•		•			•	•		0.988
	eugene3.00030074	SubName- Full=Putative uncharacterized protein; (238 aa)	•			•		•	•		0.963
	gw1.I.9894.1	hypothetical protein (104 aa)	•			•			•		0.939
	gw1.IV.2364.1	hypothetical protein (234 aa)	•		•	•	•	•	•	•	0.912
	eugene3.00160899	hypothetical protein (446 aa)	•		•				•		0.911
	gw1.XIII.2878.1	hypothetical protein (392 aa)	•		•				•		0.884
	estExt_fgenesh4_pg.C_LG_V1151	3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase (EC-2.5.1.55) (290 aa)	•		•				•		0.835
	estExt_fgenesh4_pg.C_LG_II0575	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•				•		0.833
	eugene3.01070060	CMP-KDO synthetase (288 aa)	•		•				•		0.797
	fgenesh4_pg.C_LG_XI000980	CMP-KDO synthetase (293 aa)	•		•				•		0.789

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	300
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	1e-100
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	1e-99
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	1e-87
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	2e-81
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	5e-72
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	3e-31
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	4e-31
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	3e-27
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	4e-26
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	5e-19
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	1e-17
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	3e-12
pfam13720	82	pfam13720, Acetyltransf_11, Udp N-acetylglucosamin	3e-12
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	4e-12
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	7e-10
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	1e-09
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	1e-09
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	2e-08
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	1e-07
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	2e-07
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	7e-07
cd03354	101	cd03354, LbH_SAT, Serine acetyltransferase (SAT):	1e-06
cd00710	167	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (	1e-06
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	1e-06
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	1e-06
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	1e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	3e-06
COG0110	190	COG0110, WbbJ, Acetyltransferase (isoleucine patch	4e-06
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	9e-06
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	1e-05
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	1e-05
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	2e-05
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	2e-05
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	3e-05
cd05825	107	cd05825, LbH_wcaF_like, wcaF-like: This group is c	3e-05
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	6e-05
TIGR03532	231	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6	6e-05
cd04650	154	cd04650, LbH_FBP, Ferripyochelin Binding Protein (	7e-05
cd05787	79	cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit	7e-05
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	1e-04
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	1e-04
TIGR03308	204	TIGR03308, phn_thr-fam, phosphonate metabolim prot	1e-04
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	1e-04
cd04647	109	cd04647, LbH_MAT_like, Maltose O-acyltransferase (	2e-04
COG0663	176	COG0663, PaaY, Carbonic anhydrases/acetyltransfera	2e-04
cd00208	78	cd00208, LbetaH, Left-handed parallel beta-Helix (	3e-04
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	3e-04
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	3e-04
cd04745	155	cd04745, LbH_paaY_like, paaY-like: This group is c	4e-04
COG1045	194	COG1045, CysE, Serine acetyltransferase [Amino aci	4e-04
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	6e-04
cd03349	145	cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT)	6e-04
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	7e-04
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	0.001
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	0.001
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	0.001
PLN02694	294	PLN02694, PLN02694, serine O-acetyltransferase	0.001
TIGR02287	192	TIGR02287, PaaY, phenylacetic acid degradation pro	0.001
PLN02739	355	PLN02739, PLN02739, serine acetyltransferase	0.002
PRK13627	196	PRK13627, PRK13627, carnitine operon protein CaiE;	0.003
cd03357	169	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase	0.003
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	0.004

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score =  294 bits (755), Expect = e-100
 Identities = 105/223 (47%), Positives = 131/223 (58%), Gaps = 24/223 (10%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+IV P A IG+ V +GPFC IG   ++GDG ++     I G T +G          
Sbjct: 2   IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIG---------- 51

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
                        NN I   A +G   QD+KYK G+   +++G+NN  RE V+IHR +  
Sbjct: 52  ------------KNNRIFPFASIGEAPQDLKYK-GEPTRLEIGDNNTIREFVTIHRGTAQ 98

Query: 192 GD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250
           G   T IG+NNL+M   H+AHDC IGN  I ANN  LAGHV + DY    G   +HQFC 
Sbjct: 99  GGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCR 158

Query: 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGF 293
           IG H+ +GGGS V QDVP Y + AG RA LRGLNL GL+RRGF
Sbjct: 159 IGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGLNLVGLKRRGF 201

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score =  293 bits (752), Expect = e-99
 Identities = 104/227 (45%), Positives = 131/227 (57%), Gaps = 24/227 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
             + IHPT+IV P A IG+ V +GPFC IG    +GDG            T +G H ++ 
Sbjct: 1   MMAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDG------------TVIGSHVVID 48

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  G NN I   A +G   QD+KYK G+   + +G+NN  RE V+I+R
Sbjct: 49  ----------GHTTIGKNNRIFPFASIGEDPQDLKYK-GEPTRLVIGDNNTIREFVTINR 97

Query: 188 SSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +  G   T IGDNNL+M   H+AHDC +GN+ I ANN  LAGHV V DY    G   +H
Sbjct: 98  GTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVH 157

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGF 293
           QF  IG+H+ +GG S VSQDVP Y +  G  A LRGLNL GL+RRGF
Sbjct: 158 QFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLRGLNLVGLKRRGF 204

Length = 262

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score =  262 bits (671), Expect = 1e-87
 Identities = 106/227 (46%), Positives = 131/227 (57%), Gaps = 24/227 (10%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
             + IHPT+I+ P A IG+ V +GPFC IG   ++GDG            T L  H ++ 
Sbjct: 2   KMAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDG------------TVLKSHVVVE 49

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                     G T  G NN I   A +G   QD+KYK G+   + +G+NN  RE V+IHR
Sbjct: 50  ----------GHTTIGRNNRIFPFASIGEDPQDLKYK-GEPTRLIIGDNNTIREFVTIHR 98

Query: 188 SSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            +  G   T IGDNNLIM   H+AHDC IGN  I ANN  LAGHV V DY    G   +H
Sbjct: 99  GTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVH 158

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGF 293
           QF  IG+H+ IGG S VSQDVP Y + +G  A LRGLN+ GL+RRGF
Sbjct: 159 QFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGF 205

Length = 260

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score =  246 bits (630), Expect = 2e-81
 Identities = 103/223 (46%), Positives = 134/223 (60%), Gaps = 24/223 (10%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+I+ P A IG+ V +GPFC +G   K+GDG  L     I G+T +G+   +  GAV
Sbjct: 1   IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAV 60

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
           +G   P                     QD+KYK G++  + +G+NN  RE V+I+R + S
Sbjct: 61  IGGV-P---------------------QDLKYK-GEKTRLIIGDNNTIREFVTINRGTAS 97

Query: 192 GD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250
           G   T IG+NNL+M   HIAHDC +GN+ I ANN  LAGHV V DY    G + +HQF  
Sbjct: 98  GGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVR 157

Query: 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGF 293
           IG ++ IGG S VS+DVP Y +  G RA LRGLN+ GLRRRGF
Sbjct: 158 IGRYAMIGGLSAVSKDVPPYCLAEGNRARLRGLNIVGLRRRGF 200

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score =  222 bits (567), Expect = 5e-72
 Identities = 97/229 (42%), Positives = 137/229 (59%), Gaps = 24/229 (10%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+++ P+A +G GV +GPF  IG+  ++GDG  + P + I G T +G +  +  GAV
Sbjct: 2   IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAV 61

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
           VGD+ P                     QD  YK G+E  +++G+ N  RE V+IHR +K 
Sbjct: 62  VGDE-P---------------------QDFTYK-GEESRLEIGDRNVIREGVTIHRGTKG 98

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251
           G  T IG++NL+M   H+AHDC+IGN  I  N  LLAGHV V D    +G  ++HQFC I
Sbjct: 99  GGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRI 158

Query: 252 GSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTEDLD 300
           G+ + + GGS +S+DVP Y M+AG    + GLN  GLRRRGF+ +  + 
Sbjct: 159 GALAMMAGGSRISKDVPPYCMMAGHPTNVHGLNAVGLRRRGFS-SRAIR 206

Length = 255

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score =  118 bits (299), Expect = 3e-31
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 12/203 (5%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+++ P A IG+ VS+GP   IG+   +G+  ++   + I  N ++GD  ++     
Sbjct: 102 IHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVT 161

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVG------VKCQDMKYKSGDECFVDVGNNNEFREHVSI 185
           +  +     V G N II   AV+G              K      V +G++ E   + +I
Sbjct: 162 IYHN----VVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTI 217

Query: 186 HRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI 245
            R +   D TVIG+   I     I H+ +IG + I A    +AG V +  Y    G + I
Sbjct: 218 DRGAL--DDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGI 275

Query: 246 HQFCHIGSHSFIGGGSVVSQDVP 268
                IG    IG  S V   + 
Sbjct: 276 AGHLEIGDGVTIGARSGVMASIT 298

Length = 338

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score =  115 bits (290), Expect = 4e-31
 Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 34/215 (15%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128
           +  I P +++    +IG GV +GP   IG    +GD C+++P+  I+    +GD  I+ +
Sbjct: 7   NVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHS 66

Query: 129 GAVVGDDLPGQTVFGCNNIIGHHAVV----GVKCQDMKYKSGDECFVDVGNNNEFREHVS 184
           GAV+G D  G   FG     G    +    GV   D          V++G N       +
Sbjct: 67  GAVIGSD--G---FGFAPDGGGWVKIPQLGGVIIGD---------DVEIGANT------T 106

Query: 185 IHRSSKSGDRTVIGDN----NLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTA 240
           I R +     TVIGD     NL      IAH+ +IG   + A    +AG   + D     
Sbjct: 107 IDRGAL--GDTVIGDGTKIDNL----VQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIG 160

Query: 241 GAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
           G + I     IG    IG GS V+  VP    V+G
Sbjct: 161 GQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSG 195

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score =  107 bits (271), Expect = 3e-27
 Identities = 59/232 (25%), Positives = 92/232 (39%), Gaps = 50/232 (21%)

Query: 63  ETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGD 122
             + S ++ IHP++++ P+A IG+GVS+GP   IG+   +GDG ++   + I    ++G 
Sbjct: 94  PATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGA 153

Query: 123 HCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG---------------------VKCQDM 161
            C L     +          G   II   AV+G                     V   D 
Sbjct: 154 DCRLHANVTIYHA----VRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGD- 208

Query: 162 KYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDN----NLIMGSCHIAHDCKIGN 217
                    V++G N       +I R   + D TVIG+     NL      IAH+  IG 
Sbjct: 209 --------DVEIGANT------TIDRG--ALDDTVIGEGVKIDNL----VQIAHNVVIGR 248

Query: 218 YNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPK 269
           +   A    +AG   +  Y    G + I     IG    I   S V++ +P+
Sbjct: 249 HTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPE 300

Length = 343

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score =  104 bits (262), Expect = 4e-26
 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 45/220 (20%)

Query: 72  IHPTSIVH------------PNAIIGQGVSVG------PFCTIGSAAKLGDGCLLYPSSH 113
           IHPT++V             PN +IG GV +G      P   IG    +GDG  ++P+  
Sbjct: 94  IHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVV 153

Query: 114 IFGNTELGDHCILMTGAVVGDDLPGQTVFG-CNNIIGHHA----VVGVKCQDMKYKSGDE 168
           I+   +LG + I+ +GAV+G D  G   FG  +   G H     +  V  +D        
Sbjct: 154 IYERVQLGKNVIIHSGAVIGSD--G---FGYAHTANGGHVKIPQIGRVIIED-------- 200

Query: 169 CFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA 228
             V++G N       +I R +   D T+IG+   I     IAH+C+IG   I      +A
Sbjct: 201 -DVEIGANT------TIDRGAF--DDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIA 251

Query: 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVP 268
           G   +       G + +     IG +  IG  S V++ +P
Sbjct: 252 GSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIP 291

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 82.5 bits (205), Expect = 5e-19
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHT-AGAIVIHQFCHIGS 253
             IGDN +I     I HDC IG++   A   +L+G V + +     AGA +I     IG+
Sbjct: 115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQG-VTIGA 173

Query: 254 HSFIGGGSVVSQDVPKYSMVAG 275
            + IG G+VV++DVP  S+V G
Sbjct: 174 GAIIGAGAVVTKDVPDGSVVVG 195

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHT-AGAIVIHQFCHIGS 253
             IGDN +I     + HDC IG+Y   A    L+G VV+ +     AGA +I     IG+
Sbjct: 109 VRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG-VTIGA 167

Query: 254 HSFIGGGSVVSQDVPKYSMVAG 275
            + +G G+VV++D+P   +V G
Sbjct: 168 GAVVGAGAVVTKDIPDGGVVVG 189

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           + IHP+++V P+A+IG+G  +     I   A++GD  ++   + I  +  +GD   +  G
Sbjct: 85  TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVV 154
            V+     G    G    IG  A +
Sbjct: 145 VVLS----GGVTIGEGAFIGAGATI 165

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|205895 pfam13720, Acetyltransf_11, Udp N-acetylglucosamine O-acyltransferase; Domain 2

 Score = 60.9 bits (149), Expect = 3e-12
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 266 DVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           DVP Y +  G  A LRGLNL GL+RRGF+
Sbjct: 1   DVPPYVLAEGNPARLRGLNLVGLKRRGFS 29

This is domain 2, or the C-terminal domain, of Udp N-acetylglucosamine O-acyltransferase. This enzyme is a zinc-dependent enzyme that catalyzes the deacetylation of UDP-3-O-((R)-3-hydroxymyristoyl)-N-acetylglucosamine to form UDP-3-O-(R-hydroxymyristoyl)glucosamine and acetate. Length = 82

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 63.3 bits (155), Expect = 4e-12
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           + IHP++IV P+A IG+G  +     I    ++GD  ++   + +  +  +GD+  +  G
Sbjct: 79  TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPG 138

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVV 154
             +     G  V G    IG  A +
Sbjct: 139 VTLS----GGVVIGEGVFIGAGATI 159

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 54.8 bits (133), Expect = 7e-10
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 73  HPTSIV-HPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDH 123
           H T IV    A+IG   ++    T+G            +GD  ++   + I GN  +GD+
Sbjct: 19  HGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDN 78

Query: 124 CILMTGAVVGDDLP-GQTVFG 143
             +   AVV  D+P   TV G
Sbjct: 79  VKIGANAVVTKDVPANSTVVG 99

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 43/171 (25%), Positives = 60/171 (35%), Gaps = 22/171 (12%)

Query: 114 IFGNTELGDHCILMTGAVVGDDLPGQTVFG-CNNIIGHHAVVGVKCQDMKYKSGDECFVD 172
                  G    L   A +   L G  +             +G K        GD CF+ 
Sbjct: 22  DGAFNVAGKPVKLGRYAEILGRLVGIKIGEVAVIRPPVRIDLGEK----NLTIGDLCFIG 77

Query: 173 VGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI---AHDCKIGNYNIFANNTLLAG 229
           V       E +             IGDN ++  +  I   +H       NI A   + AG
Sbjct: 78  VNVVILVGEGI------------TIGDNVVVGPNVTIYTNSHPGDFVTANIGA--LVGAG 123

Query: 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280
            V + +        VI     IG  + IG GSVV++DVP Y +VAG  A +
Sbjct: 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARV 174

Length = 190

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 54.4 bits (132), Expect = 1e-09
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 192 GDRTVIGDNNLI--MGSCHIAHDCKIGNY-NIFANNTLLAGHVVVEDYTHTAGAIVIHQF 248
           GD   IG   +I   G   I  +  IG    I+ +N  +       +   T+  IVI   
Sbjct: 5   GDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDD 64

Query: 249 CHIGSHSFI------------GGGSVVSQDVPKYSMVAG 275
             IG++  I            G GSVV++DVP  S+VAG
Sbjct: 65  VWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAG 103

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 55/232 (23%), Positives = 86/232 (37%), Gaps = 59/232 (25%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           I P  I+     IG  V +GP C I ++  +G   ++   S + G+ E+G+      G  
Sbjct: 270 IDPNVILEGKVKIGDDVVIGPGCVIKNS-VIGSNVVIKAYSVLEGS-EIGE------GCD 321

Query: 132 VG--DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           VG    L   +V G    IG+                   FV+  N         I + S
Sbjct: 322 VGPFARLRPGSVLGAGVHIGN-------------------FVETKNA-------RIGKGS 355

Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN-------NTLLAGHVVVEDYTHTAGA 242
           K+G  + +GD         I  +  IG   I  N        T++   V +   T     
Sbjct: 356 KAGHLSYLGD-------AEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP 408

Query: 243 IVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           + +      G  + I  GS V++DVP+ ++    RA  R  N+EG  R    
Sbjct: 409 VKV------GDGATIAAGSTVTKDVPEGALAIS-RARQR--NIEGWVRPKKK 451

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 39/122 (31%)

Query: 197 IGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDY-------THT---------- 239
           IGDN +I  +  I +D KIG+     +N  +   V +ED          T          
Sbjct: 1   IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60

Query: 240 -----------------AGAIVIHQFC--HIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280
                            A A ++       IG ++ +G G+VV++DVP Y++V G  A +
Sbjct: 61  RKWELKGTTVKRGASIGANATIL---PGVTIGEYALVGAGAVVTKDVPPYALVVGNPARI 117

Query: 281 RG 282
            G
Sbjct: 118 IG 119

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 66  SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCI 125
             S+  I P  I  P A IG G  +GP+  IG    +G+G  +  +S I  N  +G    
Sbjct: 253 IRSAYIIGPVVI-GPGAKIGPGALIGPYTVIGEGVTIGNGVEI-KNSIIMDNVVIGHGSY 310

Query: 126 LMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMK-YKSGDECFVD 172
           +   +++G++       G + IIG   V+G+  + +     G    V+
Sbjct: 311 I-GDSIIGEN----CKIGASLIIG-DVVIGINSEILPGVVVGPGSVVE 352

Length = 358

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 32/225 (14%)

Query: 86  QGVS-VGPFCT-IGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG 143
            GV+ + P  T I    ++G   ++YP + I G T +G+ C +     + D   G  V  
Sbjct: 240 NGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNV-- 297

Query: 144 CNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGD-----RTVIG 198
                    ++  +C+    KS  E  V VG  +  RE   + +S K G+     ++ IG
Sbjct: 298 --------KIIRSECE----KSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIG 345

Query: 199 DNN-----LIMGSCHIAHDCKIGNYNIFANNTLLAGH-VVVEDYTHTAGAIVIHQFCHIG 252
           +N        +G   +  +  IG   I  N      +   +ED         +     IG
Sbjct: 346 ENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIG 405

Query: 253 SHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEG--LRRRGFNV 295
             + IG GSV+++DVP YS+  G RA  R +  EG  L++R    
Sbjct: 406 KGALIGAGSVITEDVPPYSLALG-RA--RQIVKEGWVLKKRKEEE 447

Length = 448

>gnl|CDD|100045 cd03354, LbH_SAT, Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 183 VSIHRSSKSGDR--------TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVE 234
           + IH  +K G           VIG+  +I  +C I     +G             H  + 
Sbjct: 3   IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGK----RHPTIG 58

Query: 235 DYTHT-AGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
           D     AGA ++     IG +  IG  +VV++DVP  S V G
Sbjct: 59  DNVVIGAGAKILGN-ITIGDNVKIGANAVVTKDVPANSTVVG 99

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. Length = 101

>gnl|CDD|100039 cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 32/129 (24%)

Query: 62  YETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTI------------------------- 96
            E     S+++HPT++V  + IIG  V VGP  +I                         
Sbjct: 1   DEPVIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHAL 60

Query: 97  -GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV- 154
            G +  +G    +   + + G   +GD+C +   +VV +        G N +IGH+AVV 
Sbjct: 61  EGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFN-----AKVGDNCVIGHNAVVD 115

Query: 155 GVKCQDMKY 163
           GV+    +Y
Sbjct: 116 GVEIPPGRY 124

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. Length = 167

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 53/246 (21%), Positives = 91/246 (36%), Gaps = 79/246 (32%)

Query: 70  SFIHPTSI-VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128
           + I P S  +  +  IG    + P   I     +G+ C++ P S I  ++ +GD   +  
Sbjct: 253 TIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN 311

Query: 129 G----AVVGDDL---------PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGN 175
                + VGD++         PG       ++IG              K G+  FV++  
Sbjct: 312 SVIEESKVGDNVTVGPFAHLRPG-------SVIGEEV-----------KIGN--FVEIKK 351

Query: 176 NNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN----NTLLAGHV 231
           +        I   +K    T IGD         +  +  IG   I  N    N       
Sbjct: 352 ST-------IGEGTKVSHLTYIGD-------AEVGENVNIGCGTITVNYDGKNKF---KT 394

Query: 232 VVEDYTHTAGAIVIHQF--C--------HIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR 281
           ++ D          + F  C         +G +++I  GS +++DVP+ ++ A  RA  R
Sbjct: 395 IIGD----------NAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDAL-AIARA--R 441

Query: 282 GLNLEG 287
            +N EG
Sbjct: 442 QVNKEG 447

Length = 458

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 43/213 (20%)

Query: 75  TSIVHPNAI-IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV- 132
            +++ P    I +GV +G   TI            YP   I G+T +G+ C +  G V+ 
Sbjct: 255 VTLIDPETTYIDRGVVIGRDTTI------------YPGVCISGDTRIGEGCTIEQGVVIK 302

Query: 133 ----GDDL---PGQTVFGCNNIIGHHAVVGVKCQDMKY-KSGDEC--FVDVGNNNEFREH 182
               GDD+    G  +    +++G    +G     M + + G E    V +GN   F E 
Sbjct: 303 GCRIGDDVTVKAGSVLED--SVVGDDVAIG----PMAHLRPGTELSAHVKIGN---FVET 353

Query: 183 VSIH--RSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH-VVVEDYTHT 239
             I     SK+   T +GD         I  +  IG   I  N   +  H  V+ED    
Sbjct: 354 KKIVMGEGSKASHLTYLGD-------ATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFV 406

Query: 240 AGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM 272
              +       +G +S I  G+ V++DVP  S+
Sbjct: 407 GSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDSL 439

Length = 459

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 59/229 (25%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           I P  I+  N +IG  V +GP   I   + +GD  ++   S I G + +G+      GA 
Sbjct: 277 IEPNVILEGNTVIGDNVVIGPGSVIKD-SVIGDNAVIKAYSVIEG-STVGE------GAT 328

Query: 132 VG--DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           VG    L    V G +  IG+                   FV+V          +I + S
Sbjct: 329 VGPFARLRPGAVLGADVHIGN-------------------FVEVKK-------ATIGKGS 362

Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN-------NTLLAGHVVVEDYTHTAGA 242
           K+G  T +GD         I  +  IG   I  N        T++  +V +   +    A
Sbjct: 363 KAGHLTYLGD-------AEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNS-QLVA 414

Query: 243 IVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR 291
            V      IG  + I  GS +++DVP+ ++    RA  R  N EG  R+
Sbjct: 415 PV-----TIGDGATIAAGSTITKDVPEGALAIS-RA--RQTNKEGWVRK 455

Length = 460

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 46.6 bits (112), Expect = 3e-06
 Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 76/221 (34%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCI------ 125
           I P  I+    +IG+   +GP C I   + +GDG ++  SS I G   +G+         
Sbjct: 24  IDPGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIEG-AVIGNGATVGPFAH 81

Query: 126 LMTGAVVGDDLP-G------QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVG---- 174
           L  G V+G+ +  G      ++  G  +   H + +G    D +   G    V++G    
Sbjct: 82  LRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLG----DAEIGEG----VNIGAGTI 133

Query: 175 --NNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVV 232
             N +   +H           RTVIGDN              IG     +N+ L+A    
Sbjct: 134 TCNYDGVNKH-----------RTVIGDN------------VFIG-----SNSQLVAP--- 162

Query: 233 VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV 273
           V                 IG  + I  GS +++DVP  ++ 
Sbjct: 163 VT----------------IGDGATIAAGSTITKDVPPGALA 187

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|223188 COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGD-GCLLYPSSHIFGNTELGDHCILM 127
              ++   +V     IG  V VGP  TI + +  GD       +    G   +G+   + 
Sbjct: 75  FIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIG 134

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVV 154
            GAV+   LPG T+ G   +IG  +VV
Sbjct: 135 AGAVI---LPGVTI-GEGAVIGAGSVV 157

Length = 190

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 45.1 bits (108), Expect = 9e-06
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 181 EHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTA 240
           E   I    + G   VI    ++ G   I  DC IG   +  ++T +   VV++  +   
Sbjct: 8   ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDST-IGDGVVIKASSVIE 66

Query: 241 GAIVIHQFCHIGSHSFIGGGSVVSQDV 267
           GA++ +    +G  + +  G+V+ + V
Sbjct: 67  GAVIGNG-ATVGPFAHLRPGTVLGEGV 92

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 70  SFIHPTSIVHPNAIIGQGV------------SVGPFCTIGSAAKL------GDGCLLYPS 111
             I   ++++P+A IG  V             +G F  I     L      G+G  +   
Sbjct: 103 CVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAG 162

Query: 112 SHIFGNTELGDHCILMTGAVVGDDLP-GQTVFG 143
           + I     +G   I+  GAVV  D+P G  V G
Sbjct: 163 ATIIQGVTIGAGAIIGAGAVVTKDVPDGSVVVG 195

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKL-GDGCLLYPSSHIFGNTELGDHCILMTGA 130
           + P+S VHP A++   V +G  C IG  A L GD          FG   + D   +    
Sbjct: 3   VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGD----------FGRIVIRDGANVQDNC 52

Query: 131 VVGDDLPGQ-TVFGCNNIIGHHAVV 154
           V+    PGQ TV   N  IGH A++
Sbjct: 53  VI-HGFPGQDTVLEENGHIGHGAIL 76

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG 229
           TVIG+N LI  +  I     IG+  I     ++ G
Sbjct: 2   TVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELG 121
             IHP +++    +IG  V++GP   IG+A          +GD   +  ++ I G  ++G
Sbjct: 7   VKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIG 66

Query: 122 DHCILMTGAVVG 133
           D+ ++  GAVV 
Sbjct: 67  DNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 18/86 (20%)

Query: 181 EHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTA 240
           E+VSI  ++  G+  VIGD  +I     I     IG+      + ++  +V         
Sbjct: 6   ENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGD------DCVIHPNV--------- 50

Query: 241 GAIVIHQFCHIGSHSFIGGGSVVSQD 266
               I++ C IG    I  G+V+  D
Sbjct: 51  ---TIYEGCIIGDRVIIHSGAVIGSD 73

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|100063 cd05825, LbH_wcaF_like, wcaF-like: This group is composed of the protein product of the E

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 11/101 (10%)

Query: 192 GDRTVIGDNNLI--MGSCHIAHDCKI--------GNYNI-FANNTLLAGHVVVEDYTHTA 240
           GD + IG+   I  +    I  D  I        G+++       L+   +V+ D    A
Sbjct: 7   GDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVA 66

Query: 241 GAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR 281
               +     IG  + +G  SVV +D+P +++ AG  AV  
Sbjct: 67  AEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVPV 107

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. Length = 107

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 181 EHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTA 240
           E V IH  +      VIGDN  I     I       N              ++ D     
Sbjct: 5   EGVKIHPKAVIRGPVVIGDNVNIGPGAVI-GAATGPNE---------KNPTIIGDNVEIG 54

Query: 241 GAIVIHQFCHIGSHSFIGGGSVV 263
              VIH    IG ++ IG G+VV
Sbjct: 55  ANAVIHGGVKIGDNAVIGAGAVV 77

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 26/109 (23%)

Query: 193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHT-AGAI-------- 243
           D+ +IGDN +IM    I    +IG   +   N +L G   V    H  AGA+        
Sbjct: 97  DQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPP 156

Query: 244 -----------------VIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
                            VI +   +G  + +  G++V++DVP  ++VAG
Sbjct: 157 SAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAG 205

This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. Length = 231

>gnl|CDD|100055 cd04650, LbH_FBP, Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 32/128 (25%)

Query: 166 GDECFVDVGNNNEFREHVSIHRS----SKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIF 221
           GD   + +G  +  +E+VSIH      ++ GD   IG N ++       H  K+GNY I 
Sbjct: 35  GDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVV-------HGAKVGNYVIV 87

Query: 222 ANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERA- 278
                              GAI+++    IG H  IG G+VV+   ++P YS+V G  A 
Sbjct: 88  G-----------------MGAILLNG-AKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAK 129

Query: 279 VLRGLNLE 286
           V+R L  E
Sbjct: 130 VVRKLTEE 137

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. Length = 154

>gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251
           G  T IG+   I  S  I  +CKIG  N+  +N+ +   V +ED      +IV      I
Sbjct: 3   GRGTSIGEGTTIKNSV-IGRNCKIGK-NVVIDNSYIWDDVTIEDGCTIHHSIVADG-AVI 59

Query: 252 GSHSFIGGGSVVSQDV 267
           G    I  GS++S  V
Sbjct: 60  GKGCTIPPGSLISFGV 75

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 178 EFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYT 237
                V I   +K G   +IG   +I     I +  +I N  I  +N ++     + D  
Sbjct: 257 YIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIM-DNVVIGHGSYIGDSI 315

Query: 238 HTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG 282
                  I     IG    IG  S +   V     V G  +V+  
Sbjct: 316 -IGENCKIGASLIIG-DVVIGINSEILPGV-----VVGPGSVVES 353

Length = 358

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 28/209 (13%)

Query: 94  CTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAV 153
           CTI    +LG   ++ P +H+ GNT +G  C +  G+++ +     +  G N  + +  V
Sbjct: 257 CTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIEN-----SQIGENVTVLYSVV 311

Query: 154 VGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGD-----RTVIGDNNLI----- 203
              +  D          V +G     R    I  + + G+     ++ +G+ + +     
Sbjct: 312 SDSQIGD---------GVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSY 362

Query: 204 MGSCHIAHDCKIGNYNIFANNTLLAGH-VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSV 262
           +G   +     IG   I AN   +  H  V+ D + T    V+     +G    +  GS 
Sbjct: 363 IGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGST 422

Query: 263 VSQDVPKYSMVAGERAVLRGLNLEGLRRR 291
           +++DVP  S+    R+  R +  E  +++
Sbjct: 423 ITKDVPDNSLAIA-RS--RQVIKENWKKK 448

Length = 450

>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase hexapeptide repeat family

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 82/234 (35%)

Query: 65  SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHC 124
             S    +HPT+ +           +G +  IG   +L +               LGD+ 
Sbjct: 4   LLSPEPTLHPTAELT-------ESKLGRYTEIGERTRLRE-------------VALGDYS 43

Query: 125 ILMTGAVVGDDLPGQTVFGCNNII-------GHHAVVGVKCQDMKYKSGDECFVDVGNNN 177
            +M       D+   T+    +I         +H +         Y++    F D  ++ 
Sbjct: 44  YVMRDC----DIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAA-MYFDDASDDA 98

Query: 178 EFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYT 237
           +F       R                     I HD  IG+                    
Sbjct: 99  DFFAWRRAKR-------------------VTIGHDVWIGH-------------------- 119

Query: 238 HTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR 291
              GA+++     IG+ + I  G+VV++DV  Y++VAG  A L       +RRR
Sbjct: 120 ---GAVILPGV-TIGNGAVIAAGAVVTKDVAPYTIVAGVPAKL-------IRRR 162

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. Length = 204

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 55/177 (31%)

Query: 101 KLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQD 160
           ++     + P++ + G+  LG+   +  GAV+                            
Sbjct: 1   EIDPSAFIAPNATVIGDVTLGEGSSVWFGAVL---------------------------- 32

Query: 161 MKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNI 220
                GD   + +G     ++   +H     G  T+IGDN  + G   + H C IG+   
Sbjct: 33  ----RGDVNPIRIGERTNIQDGSVLHVD--PGYPTIIGDNVTV-GHGAVLHGCTIGDN-- 83

Query: 221 FANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAG 275
                      ++       GAI++     IG  S +  GS+V     +P  S+VAG
Sbjct: 84  ----------CLIGM-----GAIILDG-AVIGKGSIVAAGSLVPPGKVIPPGSLVAG 124

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|100053 cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 31/96 (32%)

Query: 81  NAIIGQGVSVGPFC--------TIGSAAKLGDGCLLYPSSHIFGNTE------------- 119
           N  IG  V +GP C        TIG    +G    +Y  +H   + E             
Sbjct: 1   NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIV 60

Query: 120 LGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155
           +GD   +    V+   LPG T       IG  AVVG
Sbjct: 61  IGDDVWIGANVVI---LPGVT-------IGDGAVVG 86

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. Length = 109

>gnl|CDD|223735 COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 27/145 (18%)

Query: 67  SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCIL 126
             ++F+ P++ V  +  IG GVS+ P   +      GD               +G    +
Sbjct: 15  DPTAFVAPSATVIGDVRIGAGVSIWPGAVLR-----GD----------VEPIRIGARTNI 59

Query: 127 MTGAVVGDDLPGQTVFGCNNIIGHHAVV-GVKCQDMKYKSGDECFVDVG----NNNEFRE 181
             G V+  D       G +  IGH AVV G          GD   + +G    +     +
Sbjct: 60  QDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTI-------GDNVLIGMGATVLDGAVIGD 112

Query: 182 HVSIHRSSKSGDRTVIGDNNLIMGS 206
              +   +       I   +L++GS
Sbjct: 113 GSIVGAGALVTPGKEIPGGSLVVGS 137

Length = 176

>gnl|CDD|100038 cd00208, LbetaH, Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 82  AIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTE--------LGDHCILMTGAVVG 133
             IG+GV + P   I     +GD   + P + I   T         +GD+  +   AV+ 
Sbjct: 1   VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60

Query: 134 DDLPGQTVFGCNNIIGHHAVVG 155
               G    G N +IG  AVV 
Sbjct: 61  ----GGVKIGDNAVIGAGAVVT 78

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. Length = 78

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/107 (30%), Positives = 44/107 (41%), Gaps = 30/107 (28%)

Query: 66  SSSSSFIHPTSIVHPNAIIGQGVSV--GPFCTIGSAAKLGDGCLLY------------PS 111
           SS S F+    I HP A IG+G+ +  G    IG  A +GD   +Y              
Sbjct: 59  SSLSRFLFGIEI-HPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGK 117

Query: 112 SH--------------IFGNTELGDHCILMTGAVVGDDLP-GQTVFG 143
            H              I GN E+GD+  +  G+VV  D+P   TV G
Sbjct: 118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVG 164

Length = 194

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 19/83 (22%)

Query: 77  IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL 136
           +V  N  +G+  S+     IG+  K+G    +              +C++M    + D  
Sbjct: 1   LVGENTQVGEKTSI-KRSVIGANCKIGKRVKI-------------TNCVIMDNVTIEDGC 46

Query: 137 PGQTVFGCNNIIGHHAVVGVKCQ 159
              T+  C  IIG+ AV+G KC+
Sbjct: 47  ---TLENC--IIGNGAVIGEKCK 64

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|100058 cd04745, LbH_paaY_like, paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 23/113 (20%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCT---------IGSAAKLGDGCLLYPSSHIFGNTE 119
           SSF+HPT+++  + IIG+   +GP  +         I   A + D C++    H F    
Sbjct: 6   SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVI----HGFP--- 58

Query: 120 LGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKS-GDECFV 171
            G   +L     +G    G  + GC   IG +A+VG+    M     G+E  V
Sbjct: 59  -GQDTVLEENGHIGH---GAILHGCT--IGRNALVGMNAVVMDGAVIGEESIV 105

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. Length = 155

>gnl|CDD|223975 COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHT-AGAIVIHQFCH 250
           G+  VIGD+        I H   +G     +       H  + +  +  AGA ++     
Sbjct: 91  GETAVIGDD------VTIYHGVTLGGTGKESGKR----HPTIGNGVYIGAGAKILGNIE- 139

Query: 251 IGSHSFIGGGSVVSQDVPKYSMVAGERA 278
           IG ++ IG GSVV +DVP  + V G  A
Sbjct: 140 IGDNAKIGAGSVVLKDVPPNATVVGVPA 167

Length = 194

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 31/99 (31%)

Query: 84  IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHC------------------- 124
           IG    +G    I +  K+GD   +  +  I+    + D                     
Sbjct: 1   IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIY 60

Query: 125 --------ILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155
                    +  GA +G              IG +A+VG
Sbjct: 61  RKWELKGTTVKRGASIG----ANATILPGVTIGEYALVG 95

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100040 cd03349, LbH_XAT, Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 26/119 (21%)

Query: 182 HVSIHRSSK-SGDRTVIGDNNLIMGS-CHIAHDCKIGN-----------YNIFANNTLLA 228
           ++S+   S  SG    +G + L +G  C IA   KIG            Y  +       
Sbjct: 1   NISVGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWE 60

Query: 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFI------------GGGSVVSQDVPKYSMVAG 275
                +D+  + G ++I     IG  + I              G+VV++DVP Y++V G
Sbjct: 61  DDAKFDDWP-SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGG 118

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Length = 145

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHC------- 124
           +     +     IG+G  V     I     +G GC + P+++I G T LGD C       
Sbjct: 8   VEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVE 67

Query: 125 ----ILMTGA------VVGDDLPGQTV-FGCNNII 148
               I+M G        VGD + G+ V  G   I 
Sbjct: 68  VKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTIT 102

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 18/105 (17%)

Query: 173 VGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVV 232
           V  + +  + V+I  +   G    IG+N +I     I  D  IG+       + +  +VV
Sbjct: 100 VDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGD------GSRIHPNVV 153

Query: 233 VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGER 277
                       I++   +G +  I  G+V+  D   Y+  A   
Sbjct: 154 ------------IYERVQLGKNVIIHSGAVIGSDGFGYAHTANGG 186

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 38.5 bits (91), Expect = 0.001
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 76  SIVHPNA----IIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           S++H +     IIG  V+VG    +     +GD CL+   + I     +G   I+  G++
Sbjct: 51  SVLHVDPGYPTIIGDNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSL 109

Query: 132 VGDDLPGQTV 141
           V    PG+ +
Sbjct: 110 V---PPGKVI 116

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 47/212 (22%)

Query: 88  VSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI 147
           V +GP  TI   A++   C +Y +S I     +  HC L   AVV     G T+   +++
Sbjct: 264 VRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRD-AVVS---SGATIHSFSHL 319

Query: 148 IGHHAVVGVKCQDMKY---KSGD--ECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNL 202
            G  A VG  C    Y   + G   E    VGN  E ++ V + + +K+   T +GD  +
Sbjct: 320 EG--AEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAV-LGKGAKANHLTYLGDAEI 376

Query: 203 IMGS--------CHI----AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250
             G+        C+      H   IG      +NT L   V                   
Sbjct: 377 GAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPV------------------T 418

Query: 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG 282
           IG  + +G GSV+++DVP      G  A+ RG
Sbjct: 419 IGDGALVGAGSVITKDVP-----DGSLAIARG 445

Length = 456

>gnl|CDD|178297 PLN02694, PLN02694, serine O-acetyltransferase

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 71  FIHPTSIV-HPNAIIGQGVSVGPFCTIGSAAK--------LGDGCLLYPSSHIFGNTELG 121
           F H T +V    A+IG  VS+    T+G   K        +GDG L+   + I GN ++G
Sbjct: 175 FDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIG 234

Query: 122 DHCILMTGAVVGDDLPGQT 140
           +   +  G+VV  D+P +T
Sbjct: 235 EGAKIGAGSVVLIDVPPRT 253

Length = 294

>gnl|CDD|131340 TIGR02287, PaaY, phenylacetic acid degradation protein PaaY

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 23/90 (25%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKL-GDGCLLYPSSHIFGNTELGDHCILMTGA 130
           +HP + VHP A++   V +G  C +G  A L GD          FG        +L  GA
Sbjct: 11  VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGD----------FGRI------VLKEGA 54

Query: 131 VVGDD-----LPGQ-TVFGCNNIIGHHAVV 154
            + D+      PGQ TV   N  +GH A++
Sbjct: 55  NIQDNCVMHGFPGQDTVVEENGHVGHGAIL 84

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator [Energy metabolism, Other]. Length = 192

>gnl|CDD|215394 PLN02739, PLN02739, serine acetyltransferase

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 73  HPTSIV-HPNAIIGQGVSVGPFCTIGSAAK--------LGDGCLLYPSSHIFGNTELGDH 123
           H T +V    A+IG  VS+    T+G   K        +GDG LL     I GN  +G  
Sbjct: 222 HGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAG 281

Query: 124 CILMTGAVVGDDLPGQTVFGCN--NIIGHHAVVGVKCQD----MKYKSGDECFVDVGNNN 177
            ++  G++V  D+P  ++   N   +IG      V  QD    M+Y +  E F +V    
Sbjct: 282 AMVAAGSLVLKDVPSHSMVAGNPAKLIGF-----VDEQDPSLTMEYDATREFFQNVAVA- 335

Query: 178 EFREHVSIHRSSKSGDR 194
            +RE +    S     R
Sbjct: 336 -YRETIPNGSSVSGSCR 351

Length = 355

>gnl|CDD|184189 PRK13627, PRK13627, carnitine operon protein CaiE; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 30/106 (28%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCT---------IGSAAKLGDGCLLY---------- 109
           ++F+HP++++  + I+G GV +GP  +         + + A L DGC+++          
Sbjct: 16  TAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVG 75

Query: 110 PSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155
            + HI        H  ++ G V+G D     + G N++I   AV+G
Sbjct: 76  ENGHI-------GHGAILHGCVIGRD----ALVGMNSVIMDGAVIG 110

Length = 196

>gnl|CDD|100047 cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

 Score = 37.4 bits (88), Expect = 0.003
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 22/102 (21%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           GD      N  I+    +     IG+  +   N  +  AGH                + +
Sbjct: 66  GDNFYANFNCTILDVAPV----TIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITI 121

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
            D     G ++I     IG +S IG GSVV++D+P   + AG
Sbjct: 122 GDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAG 163

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 169

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPS---------SHIFG-NTELG 121
           I P++ +   A IG  V +GP  TIG   +L    +L  S         S I G N+ +G
Sbjct: 2   IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVG 61

Query: 122 DHCILMTGAVVGDDL 136
               L    V+GDD+
Sbjct: 62  RWTRLENVTVLGDDV 76

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	300
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	100.0
COG1043	260	LpxA Acyl-[acyl carrier protein]	100.0
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	100.0
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	100.0
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	100.0
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	100.0
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	100.0
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	100.0
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.97
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.95
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.95
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.95
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.94
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.94
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.94
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.93
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.93
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.93
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.93
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.92
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.92
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.92
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.91
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.91
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.89
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.88
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.88
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.86
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.85
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.85
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.84
PRK13627	196	carnitine operon protein CaiE; Provisional	99.83
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.82
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.81
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.81
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.8
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.8
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.8
PLN02296	269	carbonate dehydratase	99.79
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.79
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.79
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.79
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.79
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.79
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.78
PLN02472	246	uncharacterized protein	99.77
PRK10502	182	putative acyl transferase; Provisional	99.77
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.77
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.76
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.76
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.75
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.75
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.75
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.74
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.74
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.73
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.73
PRK10092	183	maltose O-acetyltransferase; Provisional	99.73
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.73
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.72
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.71
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.71
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.7
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	99.69
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.69
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.69
PRK11132	273	cysE serine acetyltransferase; Provisional	99.68
PLN02296	269	carbonate dehydratase	99.67
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.66
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.66
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.66
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.66
PLN02739	355	serine acetyltransferase	99.66
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.66
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.65
PLN02694	294	serine O-acetyltransferase	99.64
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.63
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.63
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.63
PRK10191	146	putative acyl transferase; Provisional	99.63
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.62
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.62
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	99.6
PLN02357	360	serine acetyltransferase	99.59
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	99.59
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.58
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.58
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	99.57
PLN02472	246	uncharacterized protein	99.57
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.57
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.56
PRK13627	196	carnitine operon protein CaiE; Provisional	99.54
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.53
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.51
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.49
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.47
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.47
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.46
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.45
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.43
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.4
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.39
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.37
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.37
PRK10502	182	putative acyl transferase; Provisional	99.35
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.33
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.3
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.27
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.27
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.25
PRK10191	146	putative acyl transferase; Provisional	99.24
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.24
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.23
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.23
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.23
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.18
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	99.17
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.16
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.16
PRK10092	183	maltose O-acetyltransferase; Provisional	99.16
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	99.15
PLN02739	355	serine acetyltransferase	99.14
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.14
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.13
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.12
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.11
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.1
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.1
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.09
PLN02694	294	serine O-acetyltransferase	99.08
PLN02241	436	glucose-1-phosphate adenylyltransferase	99.07
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	99.07
PRK11132	273	cysE serine acetyltransferase; Provisional	99.06
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.06
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	99.06
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.05
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.04
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.04
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.04
PLN02357	360	serine acetyltransferase	99.03
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.03
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.02
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.98
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.97
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.96
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	98.9
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	98.87
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	98.87
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.83
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.82
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.74
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.73
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.73
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.72
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.72
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.71
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.64
COG4801	277	Predicted acyltransferase [General function predic	98.62
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.62
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.6
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.5
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.49
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.49
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.48
KOG1462	433	consensus Translation initiation factor 2B, gamma	98.47
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.41
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	98.41
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	98.38
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	98.3
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	98.28
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.18
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.09
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.02
COG4801	277	Predicted acyltransferase [General function predic	98.01
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.94
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.9
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.81
PF13720	83	Acetyltransf_11: Udp N-acetylglucosamine O-acyltra	97.65
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	86.96

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=100.00  E-value=4.4e-37  Score=264.87  Aligned_cols=205  Identities=47%  Similarity=0.860  Sum_probs=182.3

Q ss_pred             eECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779           71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH  150 (300)
Q Consensus        71 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~  150 (300)
                      .|||.++|++++.|++++.|+|+|.|+++++||+++.|++++.|.+++.||+++.|++++.|+.                
T Consensus         1 ~Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~----------------   64 (255)
T PRK12461          1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGD----------------   64 (255)
T ss_pred             CcCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCC----------------
Confidence            3788888888888999999999999998899999988888888888888888888777776654                


Q ss_pred             ccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779          151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH  230 (300)
Q Consensus       151 ~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~  230 (300)
                            .++++.+. .+...++||+++.|+++++|+.++..+..++||++++++.++.++++++||+++++++++.+.++
T Consensus        65 ------~pq~~~~~-g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~  137 (255)
T PRK12461         65 ------EPQDFTYK-GEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGH  137 (255)
T ss_pred             ------CCcccccc-CccceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCc
Confidence                  22333332 23446789999999999999888888889999999999999999999999999999999999999


Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      ++|||++++|.++.|.++++|+++++|+++|+|++|+|+++++.|+|||++.+|..+|+|+||++++.
T Consensus       138 v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~~~~n~vgl~r~g~~~~~~  205 (255)
T PRK12461        138 VTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCMMAGHPTNVHGLNAVGLRRRGFSSRAI  205 (255)
T ss_pred             eEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeEEecCcceEeccchhhhhhcCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999865

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=100.00  E-value=6.6e-38  Score=256.31  Aligned_cols=207  Identities=49%  Similarity=0.807  Sum_probs=189.6

Q ss_pred             CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779           69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII  148 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i  148 (300)
                      .+.|||++.|++.+.|++++.|||+|.|+++++|++++.|+++++|.+.++||+++.|-+.+.|+.              
T Consensus         3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~--------------   68 (260)
T COG1043           3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGE--------------   68 (260)
T ss_pred             ccccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCC--------------
Confidence            467899999999999999999999999999999999999999999988888888887777666654              


Q ss_pred             ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779          149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL  227 (300)
Q Consensus       149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v  227 (300)
                              .+|+++|+.. ...+.||+++.|+++++|++++..+ .-+.||++++++.++.+.++|.||++|++++++.+
T Consensus        69 --------~pQdlKykge-~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatL  139 (260)
T COG1043          69 --------DPQDLKYKGE-PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATL  139 (260)
T ss_pred             --------CCcccccCCC-ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeE
Confidence                    4566776644 6789999999999999999999766 67899999999999999999999999999999999


Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      .+.+.|||++.+|+.+-|...++||+++++|+.|.|.+|+||+++..|+||+++++|+++|+|+||+.++.
T Consensus       140 AGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i  210 (260)
T COG1043         140 AGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSREEI  210 (260)
T ss_pred             eccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCCCeEEecCCcccccccceeeeeccCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998753

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=100.00  E-value=3.7e-35  Score=261.56  Aligned_cols=238  Identities=24%  Similarity=0.346  Sum_probs=184.5

Q ss_pred             chhhhhhhccchhhHHHHHHHHHhh--cccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEEC
Q 040779           26 GMSFLLLKVRRPCLSSLSTLFLRRL--STALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLG  103 (300)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  103 (300)
                      ...++....|+..|..+..++.+..  .+.+++.+.++++++++++++|+|+++|++++.||+++.|+++++|++++.||
T Consensus        64 ~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG  143 (324)
T TIGR01853        64 KCAALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIG  143 (324)
T ss_pred             cceEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeC
Confidence            3456667888888888765542221  12356666777777777777777777777777777777777777777777777


Q ss_pred             CCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCe
Q 040779          104 DGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV  183 (300)
Q Consensus       104 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~  183 (300)
                      ++|.|++++.|.+++.||++|.|+++++|+.+.++.....    .+.+           ++....+.++||+++.|++++
T Consensus       144 ~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~----~~~~-----------~~i~~~G~vvIgd~v~IGa~~  208 (324)
T TIGR01853       144 DGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTA----NGGH-----------VKIPQIGRVIIEDDVEIGANT  208 (324)
T ss_pred             CCceECCCcEECCCCEECCCCEECCCcEECCCCccceecc----CCcc-----------eecCccceEEECCCcEECCCC
Confidence            7777777777777777777777777777765433222110    0011           122233458899999999999


Q ss_pred             EEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       184 ~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      .|+++.  ..++.||+++.++..+.|++++.||+++.+.+++.+.++++||+++|+|+++.|.++++|+++++|+++|+|
T Consensus       209 ~I~r~~--~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V  286 (324)
T TIGR01853       209 TIDRGA--FDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV  286 (324)
T ss_pred             EEecCC--cCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence            998776  478999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEeeeceEE
Q 040779          264 SQDVPKYSMVAGERAVL  280 (300)
Q Consensus       264 ~~~v~~~~~~~G~Pa~~  280 (300)
                      ++|+|++.++.|+||+.
T Consensus       287 ~~~v~~~~~~~G~pa~~  303 (324)
T TIGR01853       287 TKSIPPPGVYGGIPARP  303 (324)
T ss_pred             CCcCCCCcEEEccCccH
Confidence            99999999999999983

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=100.00  E-value=3.4e-35  Score=255.26  Aligned_cols=207  Identities=49%  Similarity=0.807  Sum_probs=176.6

Q ss_pred             CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779           69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII  148 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i  148 (300)
                      ...|+|+|+|++.+.|++++.|+|+++|++++.||+++.|++++.|.++++||++|.|++++.|..+             
T Consensus         2 ~~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~-------------   68 (262)
T PRK05289          2 MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGED-------------   68 (262)
T ss_pred             CcccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCC-------------
Confidence            3568888888888888889999999999888888888888888888888888888888887777541             


Q ss_pred             ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCc-cCCceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779          149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSK-SGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL  227 (300)
Q Consensus       149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~-~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v  227 (300)
                               ++++.+. .....+.||+++.|++++.|++.+. ....+.||++++++.++.+.+++.||+++++++++.+
T Consensus        69 ---------~q~~~~~-g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i  138 (262)
T PRK05289         69 ---------PQDLKYK-GEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATL  138 (262)
T ss_pred             ---------ceeeccc-CCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcccc
Confidence                     1222222 2233577777888888888776542 3456899999999999999999999999999999999


Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      .++++|||++|||.++.|.++++|+++++|+++|+|++|+|+++++.|+|||..++|..++++.+|+++..
T Consensus       139 ~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~~~n~~g~~~~~~~~~~~  209 (262)
T PRK05289        139 AGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLRGLNLVGLKRRGFSREEI  209 (262)
T ss_pred             ccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEEecccCeEeccchhhhhhCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999864

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=100.00  E-value=8e-35  Score=251.53  Aligned_cols=236  Identities=26%  Similarity=0.385  Sum_probs=206.7

Q ss_pred             chhhhhhhccchhhHHHHHHHHHhhc--ccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEEC
Q 040779           26 GMSFLLLKVRRPCLSSLSTLFLRRLS--TALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLG  103 (300)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  103 (300)
                      +..++..+.|...|..+..++.+.+.  +.+++.+.|++++.+++++.|+|+++|++++.||+|+.|+++++|+++++||
T Consensus        72 ~~~~Lv~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG  151 (338)
T COG1044          72 KKNALVVKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIG  151 (338)
T ss_pred             CceEEEeCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEEC
Confidence            45556666688888888766664444  3577889999999999999999999999999999999999999999999999


Q ss_pred             CCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCe
Q 040779          104 DGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV  183 (300)
Q Consensus       104 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~  183 (300)
                      ++++|++++.|..++.||++|.|+++++|+.+.+++.    .+.++ +.           +......++||++++||.++
T Consensus       152 ~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a----~~~~g-~~-----------Ki~q~g~V~Igd~VeIGanT  215 (338)
T COG1044         152 DGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYA----GTAIG-WV-----------KIPQIGRVIIGDDVEIGANT  215 (338)
T ss_pred             CCcEEcCCCEEecCcEECCceEECCCCEEccCccccc----cccCC-ce-----------EcceeceEEECCceEEcccc
Confidence            9999999999999999999999999999988644433    22222 22           22334558999999999999


Q ss_pred             EEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       184 ~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      .|++++  .+.+.||+++.|...+.|+++|.||.+|.|..++.+.+.+.||++|.||+++.|.+...|+|++.|++.+.|
T Consensus       216 ~Idrga--~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v  293 (338)
T COG1044         216 TIDRGA--LDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGV  293 (338)
T ss_pred             eecccc--ccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccccc
Confidence            999887  478999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcEEeeeceE
Q 040779          264 SQDVPKYSMVAGERAV  279 (300)
Q Consensus       264 ~~~v~~~~~~~G~Pa~  279 (300)
                      .+++|++.++.|.|++
T Consensus       294 ~~~i~~~~~~gg~P~~  309 (338)
T COG1044         294 MASITEPGYSGGIPAQ  309 (338)
T ss_pred             ccccCCCceeccCCCc
Confidence            9999988899999995

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=100.00  E-value=2.4e-32  Score=246.69  Aligned_cols=236  Identities=25%  Similarity=0.341  Sum_probs=167.4

Q ss_pred             chhhhhhhccchhhHHHHHHHHHhh----cccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcE
Q 040779           26 GMSFLLLKVRRPCLSSLSTLFLRRL----STALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAK  101 (300)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~  101 (300)
                      ++.++....|+..|..+..++....    ...+++.+.+++++.++++++|+|+++|++++.||+++.|+++++|++++.
T Consensus        71 ~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~  150 (343)
T PRK00892         71 GNALLVVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVK  150 (343)
T ss_pred             CceEEEeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcE
Confidence            4455556666666665543332111    112445555555555555555555565655566666666666666665666


Q ss_pred             ECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECC
Q 040779          102 LGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFRE  181 (300)
Q Consensus       102 Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~  181 (300)
                      ||++|.|++++.|.+++.||++|.|+++++|..+.+++..-     .+.           .+.......+.||+++.|++
T Consensus       151 IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~-----~~~-----------~~~~~~~g~v~Ig~~v~IGa  214 (343)
T PRK00892        151 IGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFAND-----RGG-----------WVKIPQLGRVIIGDDVEIGA  214 (343)
T ss_pred             ECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccC-----CCc-----------eeeccccccEEECCCcEECC
Confidence            66666666666665555566666666655555432222100     000           01122234588999999999


Q ss_pred             CeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCC
Q 040779          182 HVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGS  261 (300)
Q Consensus       182 ~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~s  261 (300)
                      ++.|.+++  ...+.||+++.++.++.|+++++||+++++.+++.+.++++||++++||.++.|.++++|++++++++++
T Consensus       215 ~~~I~~~~--~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s  292 (343)
T PRK00892        215 NTTIDRGA--LDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMS  292 (343)
T ss_pred             CcEEecCc--cccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCC
Confidence            99998766  3789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCC-CcEEeeeceE
Q 040779          262 VVSQDVPK-YSMVAGERAV  279 (300)
Q Consensus       262 vv~~~v~~-~~~~~G~Pa~  279 (300)
                      .|.+|+|+ +.++.|.||+
T Consensus       293 ~v~~~i~~~~~~~~G~pa~  311 (343)
T PRK00892        293 GVTKSIPEPGEYSSGIPAQ  311 (343)
T ss_pred             eeCCccCCCCeEEEeecCc
Confidence            99999999 8999999997

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=100.00  E-value=6.9e-32  Score=234.10  Aligned_cols=203  Identities=51%  Similarity=0.885  Sum_probs=159.9

Q ss_pred             ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779           72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH  151 (300)
Q Consensus        72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~  151 (300)
                      |+|.+.|++.+.|++++.|+|++.|++++.||+++.|++++.|.+++.||++|.|++++.|....               
T Consensus         2 I~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~---------------   66 (254)
T cd03351           2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAP---------------   66 (254)
T ss_pred             cCCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcc---------------
Confidence            56666666667777777777777777777777777777777777777777777777777775410               


Q ss_pred             cEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779          152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH  230 (300)
Q Consensus       152 ~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~  230 (300)
                             +++.+. .+...+.||+++.+++++.|+..+... ..++||++++|+.+++|.+++.||+++.+++++.+.++
T Consensus        67 -------~~~~~~-g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~  138 (254)
T cd03351          67 -------QDLKYK-GEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGH  138 (254)
T ss_pred             -------cceeec-CCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCC
Confidence                   000000 111235566666666666665544433 47899999999999999999999999999999999999


Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCccc
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE  297 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~  297 (300)
                      ++||++++|+.++.+.++++|+++++|+++|+|.+|+|++++++|+||+..+.+...+++.|++++.
T Consensus       139 v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~~~~~~~g~~~~g~~~~~  205 (254)
T cd03351         139 VEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGLNLVGLKRRGFSREE  205 (254)
T ss_pred             cEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEEEccCCeEeccceeceeecCCCHHH
Confidence            9999999999999999999999999999999999999999999999999888998888888998764

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=100.00  E-value=6.7e-32  Score=234.17  Aligned_cols=204  Identities=49%  Similarity=0.847  Sum_probs=166.0

Q ss_pred             ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779           72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH  151 (300)
Q Consensus        72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~  151 (300)
                      |+|+++|.+.+.|++++.|+|+++|++++.|++++.|++++.|.++++||++|.|++++.|......             
T Consensus         1 i~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~-------------   67 (254)
T TIGR01852         1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQD-------------   67 (254)
T ss_pred             CCCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcc-------------
Confidence            4667777777777778888888888878888888888888888878888888888888777642100             


Q ss_pred             cEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779          152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH  230 (300)
Q Consensus       152 ~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~  230 (300)
                               ..+ ......+.||+++.|++++.|..+.... ..+.||+++.+..++.+.+++.||+++++++++.+.++
T Consensus        68 ---------~~~-~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~  137 (254)
T TIGR01852        68 ---------LKY-KGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH  137 (254)
T ss_pred             ---------eee-cCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC
Confidence                     000 0111235667777777777776654433 58899999999999999999999999999999999999


Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      ++||++++||.++.+.++++|+++++|+++++|++|+|++++++|+||++.+.++.++.+.+++++..
T Consensus       138 ~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~  205 (254)
T TIGR01852       138 VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLVEGNRARLRGLNIVGLRRRGFSREDI  205 (254)
T ss_pred             cEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcEEecCcCeecccceeeeecCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999888888998899988753

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.97  E-value=2.3e-29  Score=211.92  Aligned_cols=199  Identities=31%  Similarity=0.461  Sum_probs=168.7

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG  143 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig  143 (300)
                      +.++++++|+|.++|++++.|+++++|++++.|+++++||+++.|++++.|.+++.||+++.|++++.|..+.+......
T Consensus         2 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~   81 (205)
T cd03352           2 AKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG   81 (205)
T ss_pred             cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecC
Confidence            45889999999999999999999999999999999999999999999999998899999999999888865211111000


Q ss_pred             cceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEcc
Q 040779          144 CNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN  223 (300)
Q Consensus       144 ~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~  223 (300)
                           +..           +.......+.|++++.+++++.+....  ...+.||+++.++.++.+.+++.+++++.+..
T Consensus        82 -----~~~-----------~~~~~~~~v~Ig~~~~Ig~~~~i~~~~--~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~  143 (205)
T cd03352          82 -----GGW-----------VKIPQLGGVIIGDDVEIGANTTIDRGA--LGDTVIGDGTKIDNLVQIAHNVRIGENCLIAA  143 (205)
T ss_pred             -----CcE-----------EEcCCcceEEECCCEEECCCCEEeccc--cCCeEECCCCEECCceEEeCCCEECCCCEECC
Confidence                 000           011222346788888888888886554  46789999999999999999999999999999


Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      ++.+.+++.||++++|+.++.+.++++|+++++++++++|++|+|++.++.|+|||.
T Consensus       144 ~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~  200 (205)
T cd03352         144 QVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQP  200 (205)
T ss_pred             CCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCCEEEeecCch
Confidence            999999999999999999999999999999999999999999999999999999985

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=1.3e-27  Score=211.11  Aligned_cols=196  Identities=24%  Similarity=0.330  Sum_probs=163.7

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      .+...+|+.+++|+.++.|+|++.+.+++.||++|.|||+|.|. |+.|++++.|.++|.|. +++||++|.||+.+.++
T Consensus       259 dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LR  336 (460)
T COG1207         259 DPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLR  336 (460)
T ss_pred             CCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceee-ccEecCCcccCCccccC
Confidence            34456777888888888899998888888899999999998888 78888888888888888 88888888888888888


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC  213 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v  213 (300)
                      .    .+.|+++++||.++.+.                          ++.|+.++...|-++|||       +.|+.++
T Consensus       337 P----g~~L~~~~hIGNFVEvK--------------------------~a~ig~gsKa~HLtYlGD-------A~iG~~~  379 (460)
T COG1207         337 P----GAVLGADVHIGNFVEVK--------------------------KATIGKGSKAGHLTYLGD-------AEIGENV  379 (460)
T ss_pred             C----cCcccCCCeEeeeEEEe--------------------------cccccCCccccceeeecc-------ceecCCc
Confidence            7    48888888888888772                          334444455567788887       6778888


Q ss_pred             EeCCccEEccCce-ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhc
Q 040779          214 KIGNYNIFANNTL-LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR  291 (300)
Q Consensus       214 ~Ig~~~~i~~~~~-v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~  291 (300)
                      .||.+++..+.-- -+..++||+++|||+++.+..+++||+++.+++||+|++|+|++++..+   |.++.++++|++.
T Consensus       380 NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~---RarQ~~~egw~~~  455 (460)
T COG1207         380 NIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAIS---RARQTNKEGWVRK  455 (460)
T ss_pred             eeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEe---ecceeeccccccc
Confidence            8888888766543 4456999999999999999999999999999999999999999999995   7789999999887

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.95  E-value=3.7e-26  Score=190.53  Aligned_cols=185  Identities=22%  Similarity=0.317  Sum_probs=131.5

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      ......+++.+.++++++|+|+++|.+++.||++|+|++++.|.. ..|++++.|++++.|. ++.|++++.|++++.|.
T Consensus         6 ~~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~-~~Ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~I~   83 (193)
T cd03353           6 DPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIE-GAVIGNGATVGPFAHLR   83 (193)
T ss_pred             CCCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeC-CEECCCCEEcCCeEEE-eeEECCCCEECCccEEc
Confidence            345566777888888888888888888888888888888888884 5888888888888887 77888888888877776


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC  213 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v  213 (300)
                      .    .+.|++++.+++++.+..              ..|++++.+                  +..+.+ .++.|++++
T Consensus        84 ~----~~~Ig~~~~Ig~~~~i~~--------------s~ig~~~~i------------------~~~~~i-~~~~Ig~~~  126 (193)
T cd03353          84 P----GTVLGEGVHIGNFVEIKK--------------STIGEGSKA------------------NHLSYL-GDAEIGEGV  126 (193)
T ss_pred             C----ccEECCCCEECCcEEEec--------------ceEcCCCEe------------------ccccee-cccEECCCC
Confidence            4    266666666666655510              122222222                  211111 123333333


Q ss_pred             EeCCccEEccCcee-cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeec
Q 040779          214 KIGNYNIFANNTLL-AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGER  277 (300)
Q Consensus       214 ~Ig~~~~i~~~~~v-~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~P  277 (300)
                      .+|.++.+...... ..+++|||++|+|.++.+.++++|+++++|+++++|++|+|+++++.|.|
T Consensus       127 ~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~  191 (193)
T cd03353         127 NIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARA  191 (193)
T ss_pred             EEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEecc
Confidence            33333333222211 24799999999999999999999999999999999999999999999976

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.95  E-value=1.8e-26  Score=216.66  Aligned_cols=187  Identities=19%  Similarity=0.263  Sum_probs=113.3

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG  138 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~  138 (300)
                      .+++++.|++++.|+++++|.+++.||+++.|++++.|. ++.|+++|.|++++.|. ++.||++|.|++++.|..    
T Consensus       257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~----  330 (451)
T TIGR01173       257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLE-GSEIGEGCDVGPFARLRP----  330 (451)
T ss_pred             EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEe-cccccCCcEECCeeEECC----
Confidence            445555555556666666655555566666666555555 45555555555555555 455555555555555543    


Q ss_pred             ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCc
Q 040779          139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNY  218 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~  218 (300)
                      .+.|++++.|++++.+.              ...||+                  ++.++..+.++ ++.|++++.||.+
T Consensus       331 ~~~i~~~~~Ig~~~~i~--------------~~~ig~------------------~~~i~~~~~i~-~~~Ig~~~~ig~~  377 (451)
T TIGR01173       331 GSVLGAGVHIGNFVETK--------------NARIGK------------------GSKAGHLSYLG-DAEIGSNVNIGAG  377 (451)
T ss_pred             CCEECCCcEEccceeec--------------CcEECC------------------CcEecceeeEe-eeEEcCCcEECCC
Confidence            24455555555444441              011222                  22222222221 2333444444444


Q ss_pred             cEEccCceec-CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779          219 NIFANNTLLA-GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN  284 (300)
Q Consensus       219 ~~i~~~~~v~-~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~  284 (300)
                      +++....... .+++||+++|||.++.+.++++|+++++|+++++|++|+|+++++.|.|++....+
T Consensus       378 ~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~  444 (451)
T TIGR01173       378 TITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIEG  444 (451)
T ss_pred             eEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeeccc
Confidence            4333322222 26999999999999999999999999999999999999999999999999754443

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.94  E-value=1.3e-25  Score=194.46  Aligned_cols=205  Identities=25%  Similarity=0.380  Sum_probs=157.5

Q ss_pred             CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779           69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII  148 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i  148 (300)
                      ...|+|.++|++.+.+++++.|+++++|+.++.||++++|++++.|+.++.||++|.|.+++.|+.    .+.||++|.|
T Consensus        99 ~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~----~~~IG~~v~I  174 (338)
T COG1044          99 AAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYH----NVVIGNNVII  174 (338)
T ss_pred             ccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEec----CcEECCceEE
Confidence            345666666666677777777777777777777777777777777777888888888888888876    3788888888


Q ss_pred             ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC----cEeCCccEEccC
Q 040779          149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD----CKIGNYNIFANN  224 (300)
Q Consensus       149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~----v~Ig~~~~i~~~  224 (300)
                      .+++.|+...  |.|           ..+.++ +..+    ..-..++|||++.|+.+++|.++    +.|++++.|.+.
T Consensus       175 ~~GavIG~dg--Fg~-----------a~~~~g-~~Ki----~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~  236 (338)
T COG1044         175 HSGAVIGADG--FGY-----------AGTAIG-WVKI----PQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNL  236 (338)
T ss_pred             CCCCEEccCc--ccc-----------ccccCC-ceEc----ceeceEEECCceEEcccceeccccccCceecCCcEEcce
Confidence            8888886432  111           111222 1222    12468889999999999999887    999999999999


Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEecChhhhhhcCCCcc
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGLNLEGLRRRGFNVT  296 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~  296 (300)
                      +.+.++|+||++|.|.+++.+...++||+++++|+.+.+...  +.+++.+.+.-...+.+..+. ...+++..
T Consensus       237 vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~-~~gg~P~~  309 (338)
T COG1044         237 VQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPG-YSGGIPAQ  309 (338)
T ss_pred             eEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccccCCCc-eeccCCCc
Confidence            999999999999999999999999999999999999999997  599999988666666666655 33556554

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.94  E-value=4.3e-25  Score=207.54  Aligned_cols=215  Identities=20%  Similarity=0.347  Sum_probs=138.6

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCc-EEcCCCEECCCCEECCCCEECCCcEECCCC
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTS-IVHPNAIIGQGVSVGPFCTIGSAAKLGDGC  106 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~-~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~  106 (300)
                      .|+....|+.++.... +++......+.          .....++++.+ +|++++.|++++.|++++.|+++++||++|
T Consensus       225 ~~~~i~~~~~~~~a~~-~l~~~~~~~~~----------~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~  293 (459)
T PRK14355        225 EIMGVNDRAQLAEAAR-VLRRRINRELM----------LAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGC  293 (459)
T ss_pred             HhcCCCCHHHHHHHHH-HHHHHHHHHHH----------hCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCC
Confidence            4777777877776643 33332211110          01123455543 466666666666666666666666777777


Q ss_pred             EECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEe
Q 040779          107 LLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIH  186 (300)
Q Consensus       107 ~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~  186 (300)
                      .|++++.|. ++.||++|.|++++.+.+     ++|++++.|++++.+..             ...|++++.++.++.+ 
T Consensus       294 ~I~~~~~I~-~~~Ig~~~~I~~~~~i~~-----~~i~~~~~ig~~~~i~~-------------~~~i~~~~~ig~~~~~-  353 (459)
T PRK14355        294 TIEQGVVIK-GCRIGDDVTVKAGSVLED-----SVVGDDVAIGPMAHLRP-------------GTELSAHVKIGNFVET-  353 (459)
T ss_pred             EECCCCEEe-CCEEcCCCEECCCeEEeC-----CEECCCCEECCCCEECC-------------CCEeCCCCEECCCccc-
Confidence            777777775 577777777777777654     66777777776666621             1345555555554433 


Q ss_pred             cCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-------cCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          187 RSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-------AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       187 ~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-------~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                            ..+.||+++.+...+.++ ++.||+++.|+.++.+       ..++.||+++++|.++.+.++++|+++++|++
T Consensus       354 ------~~~~ig~~~~~~~~~~ig-~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a  426 (459)
T PRK14355        354 ------KKIVMGEGSKASHLTYLG-DATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAA  426 (459)
T ss_pred             ------cCCEECCCceeeeecccc-CCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECC
Confidence                  344455555554433332 3444444444444432       34689999999999999999999999999999


Q ss_pred             CCEECCCCCCCcEEeeeceEE
Q 040779          260 GSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       260 ~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      +|+|.+|+|+++++.|.|+..
T Consensus       427 ~s~v~~~v~~~~~~~~~~~~~  447 (459)
T PRK14355        427 GTTVTKDVPPDSLAIARSPQV  447 (459)
T ss_pred             CCEEcccCCCCcEEEecccee
Confidence            999999999999999976644

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.94  E-value=2.3e-25  Score=193.22  Aligned_cols=178  Identities=18%  Similarity=0.271  Sum_probs=143.6

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeC------------CcEEC
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFG------------NTELG  121 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~------------~~~IG  121 (300)
                      +++.+.|++++++++++.|+|+++|++++.||+++.|++++.|.+++.||+++.|++++.|++            +++||
T Consensus         2 I~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG   81 (254)
T cd03351           2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIG   81 (254)
T ss_pred             cCCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEEC
Confidence            577889999999999999999999999999999999999999998999999998888888864            34455


Q ss_pred             CCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCC
Q 040779          122 DHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNN  201 (300)
Q Consensus       122 ~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~  201 (300)
                      ++|.|++++.|..                      ..      ......++||+++.+++++.|      .+++.||+++
T Consensus        82 ~~~~Ig~~~~I~~----------------------~~------~~~~~~~~IG~~~~I~~~~~I------~~~~~IG~~~  127 (254)
T cd03351          82 DNNTIREFVTIHR----------------------GT------AQGGGVTRIGNNNLLMAYVHV------AHDCVIGNNV  127 (254)
T ss_pred             CCCEECCccEEec----------------------cc------cCCCCceEECCCCEECCCCEE------CCCCEECCCc
Confidence            5555555544433                      11      001123667777777777776      5788999999


Q ss_pred             EEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC
Q 040779          202 LIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV  267 (300)
Q Consensus       202 ~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v  267 (300)
                      +++.++.+.+++.||++++++.++.+..+++||++++|+++++|.++  |++++++.+......++
T Consensus       128 ~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~~~~~~~~  191 (254)
T cd03351         128 ILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGL  191 (254)
T ss_pred             EECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee--cCCCeEEEccCCeEecc
Confidence            99999999999999999999999999999999999999999999986  68899998876554443

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.93  E-value=2.4e-24  Score=202.41  Aligned_cols=183  Identities=19%  Similarity=0.291  Sum_probs=126.3

Q ss_pred             cCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCc
Q 040779           60 DKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQ  139 (300)
Q Consensus        60 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~  139 (300)
                      +.+.+.+++++.|++++.|.+++.||+++.|++++.|. ++.|++++.|++++.|. ++.||+++.|++++.|..    .
T Consensus       262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~----~  335 (456)
T PRK09451        262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVE-DANLGAACTIGPFARLRP----G  335 (456)
T ss_pred             ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEe-CCccCCCcEecCceEEeC----C
Confidence            34455677777777777777777777777777777775 67777777777777776 677777777777777754    2


Q ss_pred             eeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCcc
Q 040779          140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYN  219 (300)
Q Consensus       140 ~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~  219 (300)
                      +.+++++.|++++.+..              ..|                  ++++.++..+.+ .++.|++++.||.++
T Consensus       336 ~~i~~~~~ig~~~~i~~--------------~~i------------------~~~~~~~~~~~~-g~~~ig~~~~ig~~~  382 (456)
T PRK09451        336 AELAEGAHVGNFVEMKK--------------ARL------------------GKGSKAGHLTYL-GDAEIGDNVNIGAGT  382 (456)
T ss_pred             CEECCCceeccceeeec--------------eee------------------CCCCccCccccc-cccEECCCCEEcCCe
Confidence            55666666666555410              122                  223333333332 134455555555555


Q ss_pred             EEccCceecC-ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE-eeeceEEE
Q 040779          220 IFANNTLLAG-HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV-AGERAVLR  281 (300)
Q Consensus       220 ~i~~~~~v~~-~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~-~G~Pa~~~  281 (300)
                      ++........ +++|||+++||.++.+.++++|+++++|+++|+|++|+|+++++ .|.|++..
T Consensus       383 ~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~  446 (456)
T PRK09451        383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHI  446 (456)
T ss_pred             EEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceec
Confidence            4444333333 58999999999999999999999999999999999999999887 56899843

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.93  E-value=2.3e-24  Score=187.03  Aligned_cols=186  Identities=18%  Similarity=0.268  Sum_probs=141.6

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      ++++++|+++++|++++.|+|+++|.+++.|++++.|++++.|.+++.||+++.|++++.|++.....  ...+.     
T Consensus         1 i~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~--~~~g~-----   73 (254)
T TIGR01852         1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDL--KYKGE-----   73 (254)
T ss_pred             CCCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcce--eecCc-----
Confidence            36788899999999999999999999999999999999999999899999999998888887421100  00000     


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC  213 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v  213 (300)
                         ...+.||+++.|++++.|+...      ......+.||+++.+++++.+      .++++||++++++.++.+.+++
T Consensus        74 ---~~~v~IG~~~~I~~~~~I~~~~------~~~~~~~~IG~~~~I~~~~~I------~~~~~Ig~~~~i~~~~~i~~~~  138 (254)
T TIGR01852        74 ---RTELIIGDNNTIREFVTINRGT------ASGGGVTRIGNNNLLMAYSHI------AHDCVVGNHVILANNATLAGHV  138 (254)
T ss_pred             ---cceEEECCCCEECCCCEECCcc------cCCCCcEEECCCCEECCCCEE------ccCCEECCCCEECCCCEECCCc
Confidence               0124444444444444443211      001123566666666666666      5788999999999999999999


Q ss_pred             EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      .||++++++.++.+..+++|+++++|+++++|.++  |++++++.+....
T Consensus       139 ~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~pa~  186 (254)
T TIGR01852       139 EVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNRAR  186 (254)
T ss_pred             EECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcEEecCcCe
Confidence            99999999999999999999999999999999975  8999999886443

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.93  E-value=1.9e-24  Score=187.88  Aligned_cols=184  Identities=18%  Similarity=0.276  Sum_probs=142.0

Q ss_pred             cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      .+++++.|++.++|++++.|+|+++|++++.||+++.|++++.|.++++||++|.|++++.|++..+-.+.         
T Consensus         4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~---------   74 (262)
T PRK05289          4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKY---------   74 (262)
T ss_pred             ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecc---------
Confidence            47899999999999999999999999999999999999999999999999999999988888753211000         


Q ss_pred             ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC
Q 040779          133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD  212 (300)
Q Consensus       133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~  212 (300)
                       ......+.||+++.|++++.|....      ......+.||+++.++.++.|      .+++.||+++.++.++.+..+
T Consensus        75 -~g~~~~v~IG~~~~I~e~~~I~~~~------~~~~~~t~IG~~~~I~~~~~I------~h~~~IG~~v~i~~~~~i~g~  141 (262)
T PRK05289         75 -KGEPTRLVIGDNNTIREFVTINRGT------VQGGGVTRIGDNNLLMAYVHV------AHDCVVGNHVILANNATLAGH  141 (262)
T ss_pred             -cCCCCeEEECCCCEECCCeEEeccc------ccCCCeeEECCceEECCCCEE------CCeEEECCCeEECCccccccc
Confidence             0001224555555555555553221      011223556666666666655      678999999999999999999


Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +.||++++++.++.+..+++||++++++++++|.++  |++++++.+.
T Consensus       142 v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~G~  187 (262)
T PRK05289        142 VEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAEGN  187 (262)
T ss_pred             cccCCcEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEEecc
Confidence            999999999999999999999999999999999985  7888888653

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.93  E-value=2.8e-24  Score=185.39  Aligned_cols=182  Identities=16%  Similarity=0.231  Sum_probs=140.2

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++++.|++.++|++++.|+|+++|++++.||+++.|++++.|.+++.||+++.|++++.|++...        +..+..
T Consensus         2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--------~~~~~g   73 (255)
T PRK12461          2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--------DFTYKG   73 (255)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--------cccccC
Confidence            678899999999999999999999999999999999999999998899999888888877764211        000110


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC  213 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v  213 (300)
                        ....+.||+++.|++++.|...+       .....++||+++.+.++++|      ++++.||++++++.++.+..++
T Consensus        74 --~~~~v~IG~~~~I~e~vtI~~gt-------~~g~~t~IG~~~~i~~~~~I------~hd~~IG~~v~i~~~~~i~g~v  138 (255)
T PRK12461         74 --EESRLEIGDRNVIREGVTIHRGT-------KGGGVTRIGNDNLLMAYSHV------AHDCQIGNNVILVNGALLAGHV  138 (255)
T ss_pred             --ccceeEECCceEECCccEEecCc-------ccCCcEEEcccceeccCcEE------CCCCEECCCcEECCCCccCCce
Confidence              12235566666666666664321       01122445555555544444      7899999999999999999999


Q ss_pred             EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .||++++++.++.+..+++||++++++++++|.++  +++++++.++
T Consensus       139 ~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~G~  183 (255)
T PRK12461        139 TVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMAGH  183 (255)
T ss_pred             EECCCeEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEecC
Confidence            99999999999999999999999999999999987  7999998765

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.92  E-value=1.2e-23  Score=190.10  Aligned_cols=208  Identities=26%  Similarity=0.381  Sum_probs=166.5

Q ss_pred             CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779           68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI  147 (300)
Q Consensus        68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~  147 (300)
                      ..+.|+|.+.|.+++.|++++.|++++.|++++.||+++.|++++.|++++.||++|.|++++.|..    .+.||++|.
T Consensus        99 ~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~----~~~Ig~~~~  174 (343)
T PRK00892         99 PAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYH----AVRIGNRVI  174 (343)
T ss_pred             cCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcC----CCEECCCCE
Confidence            3567888888888888999999999999999999999999999999999999999999999999987    378999999


Q ss_pred             EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC----cCcEeCCccEEcc
Q 040779          148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA----HDCKIGNYNIFAN  223 (300)
Q Consensus       148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~----~~v~Ig~~~~i~~  223 (300)
                      |++++.|+.....+.  ...      +.      ...+..    ...+.||+++.|+.+++|.    .+++||+++.+..
T Consensus       175 I~~~~~Ig~~~f~~~--~~~------~~------~~~~~~----~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~  236 (343)
T PRK00892        175 IHSGAVIGSDGFGFA--NDR------GG------WVKIPQ----LGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN  236 (343)
T ss_pred             ECCCCEEeccCcCcc--cCC------Cc------eeeccc----cccEEECCCcEECCCcEEecCccccceeCCCCEEeC
Confidence            999999975432221  111      11      111100    2366777777777777774    5789999999999


Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEecChhhhhhcCCCccc
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGLNLEGLRRRGFNVTE  297 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~  297 (300)
                      .+.+.++++||+++++++++.+..+++||+++++++++.|..+  +.+++++++...-.+.++.......|+++..
T Consensus       237 ~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~  312 (343)
T PRK00892        237 LVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGEYSSGIPAQP  312 (343)
T ss_pred             CeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCCCCeEEEeecCch
Confidence            9999999999999999999999999999999999999999998  6999999987554555544333345666554

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=3e-23  Score=196.10  Aligned_cols=198  Identities=18%  Similarity=0.279  Sum_probs=123.0

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      ..+|++.+.|++++.|+|++.|.+++.||++|.|++++.|. ++.|++++.|.. +.+. ++.|++++.|++++.+..  
T Consensus       265 ~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~-~~iIg~~~~Ig~~~~i~~--  339 (482)
T PRK14352        265 TTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGS-ESEIGAGATVGPFTYLRP--  339 (482)
T ss_pred             eEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeee-cCEEcCCCEECCCeEecC--
Confidence            44566666677777777777777667777777777777775 566666666653 4443 666666666666666643  


Q ss_pred             CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeC
Q 040779          137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG  216 (300)
Q Consensus       137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig  216 (300)
                        .++|++++.++.++.+.              ...|++++.++..+.+       .+            +.|++++.||
T Consensus       340 --~~vIg~~~~ig~~~~~~--------------~~~I~~~~~i~~~~~i-------~~------------~~Ig~~~~IG  384 (482)
T PRK14352        340 --GTVLGEEGKLGAFVETK--------------NATIGRGTKVPHLTYV-------GD------------ADIGEHSNIG  384 (482)
T ss_pred             --CcEEcCCCEECCcEEEc--------------ccEECCCcEEccCcee-------cc------------cEECCCcEEC
Confidence              25556666655554431              0122222222221111       12            2333333333


Q ss_pred             CccEEccCce-ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE-eeeceE-EEecChhhhhhcCC
Q 040779          217 NYNIFANNTL-LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV-AGERAV-LRGLNLEGLRRRGF  293 (300)
Q Consensus       217 ~~~~i~~~~~-v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~-~G~Pa~-~~~~~~~~~~~~~~  293 (300)
                      .++.+..... ..+++.||+++++|.++.+.++++|+++++|+++++|++|+|+++++ .|.|++ ++++  .+.++.+.
T Consensus       385 ~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~--~~~~~~~~  462 (482)
T PRK14352        385 ASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGW--VQRKRPGT  462 (482)
T ss_pred             CCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEecccccccccc--cccccccc
Confidence            3333322111 13468999999999999999999999999999999999999999865 599998 4443  33444555


Q ss_pred             Ccc
Q 040779          294 NVT  296 (300)
Q Consensus       294 ~~~  296 (300)
                      +++
T Consensus       463 ~~~  465 (482)
T PRK14352        463 PAA  465 (482)
T ss_pred             hhh
Confidence            544

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.92  E-value=5.2e-24  Score=174.82  Aligned_cols=187  Identities=17%  Similarity=0.245  Sum_probs=161.3

Q ss_pred             ccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcE
Q 040779           52 TALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV  131 (300)
Q Consensus        52 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~  131 (300)
                      ..+||.+.|+|.|+|++++.|+|+|+|+++++|++++.|+++++|.+.++||+++.|.+.+.|+...+-          .
T Consensus         4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQd----------l   73 (260)
T COG1043           4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQD----------L   73 (260)
T ss_pred             cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcc----------c
Confidence            458999999999999999999999999999999999999999999999999999999998888753331          1


Q ss_pred             EccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECc
Q 040779          132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAH  211 (300)
Q Consensus       132 i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~  211 (300)
                      =+.+.+....||++|.|.+++++.+.+      ........||+++.+-.++++      .++|.||++|.+..++++..
T Consensus        74 Kykge~T~l~IG~~n~IRE~vTi~~GT------~~g~g~T~IGdnnl~May~HV------AHDC~iGn~~ilaNnatLAG  141 (260)
T COG1043          74 KYKGEPTRLIIGDNNTIREFVTIHRGT------VQGGGVTRIGDNNLIMAYAHV------AHDCVIGNNCILANNATLAG  141 (260)
T ss_pred             ccCCCceEEEECCCCeEeeEEEEeccc------cCCceeEEECCCCEEEEeeee------eccceecCcEEEecCCeEec
Confidence            111224457888999999999886553      234456889999988888888      78999999999999999999


Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCE
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSV  262 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~sv  262 (300)
                      ++.||++++++..+-+...++||+++++|+.+-|..+  ++|++++.++--
T Consensus       142 HV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~D--VpPy~~~~Gn~a  190 (260)
T COG1043         142 HVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD--VPPYVIASGNHA  190 (260)
T ss_pred             cEEECCEEEEcCcceEEEEEEEcchheeccccccccC--CCCeEEecCCcc
Confidence            9999999999999999999999999999999999975  899998887643

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=2.1e-23  Score=195.85  Aligned_cols=193  Identities=24%  Similarity=0.391  Sum_probs=132.5

Q ss_pred             eECCCc-EEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779           71 FIHPTS-IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG  149 (300)
Q Consensus        71 ~I~~~~-~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig  149 (300)
                      ++++.+ .+.+++.|++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|+ .+.+.+     +.|++++.|+
T Consensus       251 ~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~-~~~I~~~~~I~-~~~i~~-----~~ig~~~~I~  323 (450)
T PRK14360        251 FIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIE-NSQIGENVTVL-YSVVSD-----SQIGDGVKIG  323 (450)
T ss_pred             EecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEE-EEEEcCCCEEe-eeEEee-----ccccCCcEEC
Confidence            455553 466666677777777777777677777777777777776 66777777774 344444     6777777777


Q ss_pred             cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceec-
Q 040779          150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA-  228 (300)
Q Consensus       150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~-  228 (300)
                      +++.|..             ...||+++.++.++.+.. +.+++++.|+.++++ ..+.|++++.||.++++.....+. 
T Consensus       324 ~~~~I~~-------------~~~Ig~~~~Ig~~~~i~~-~~i~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~~~~~  388 (450)
T PRK14360        324 PYAHLRP-------------EAQIGSNCRIGNFVEIKK-SQLGEGSKVNHLSYI-GDATLGEQVNIGAGTITANYDGVKK  388 (450)
T ss_pred             CCCEECC-------------CCEEeCceEECCCEEEec-cccCCCcEeccceec-CCceecCCcEECccceecccccccc
Confidence            7777732             256667777776666632 233344444443333 234445555555554444332222 


Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL  285 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~  285 (300)
                      .+++||++++||.++++.++++|+++++|+++++|++|+|+++++.|+|++..+.++
T Consensus       389 ~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~~~  445 (450)
T PRK14360        389 HRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKENW  445 (450)
T ss_pred             CCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeeccch
Confidence            379999999999999999999999999999999999999999999999998664444

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.92  E-value=1.7e-23  Score=196.37  Aligned_cols=188  Identities=20%  Similarity=0.352  Sum_probs=127.4

Q ss_pred             eECCC-cEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779           71 FIHPT-SIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG  149 (300)
Q Consensus        71 ~I~~~-~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig  149 (300)
                      .++|. ++|++++.||+++.|++++.|.+++.||++|.|++++.|. ++.||++|.|.. +.+..     +.|++++.++
T Consensus       244 ~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~-~~v~~-----sii~~~~~ig  316 (448)
T PRK14357        244 ILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIR-SECEK-----SVIEDDVSVG  316 (448)
T ss_pred             EeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEee-eEEEE-----EEEeCCcEEC
Confidence            34443 4666667777777777777777677777777777777776 577777777743 34443     6667777777


Q ss_pred             cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccc-----cEECcCcEeCCccEEccC
Q 040779          150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGS-----CHIAHDCKIGNYNIFANN  224 (300)
Q Consensus       150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~-----~~i~~~v~Ig~~~~i~~~  224 (300)
                      +++.++.             ...||+++.+++++.+.       .+.||+++.+...     +.|++++.||.++.+...
T Consensus       317 ~~~~i~~-------------~~~ig~~~~Ig~~~~i~-------~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~  376 (448)
T PRK14357        317 PFSRLRE-------------GTVLKKSVKIGNFVEIK-------KSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNY  376 (448)
T ss_pred             CCcEECC-------------cccccCCcEecCceeee-------ccEEcCCcCccccccccCcEECCCcEECCCcccccc
Confidence            6666621             14566666666655542       2344444443333     334444444444433322


Q ss_pred             ce-ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779          225 TL-LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL  285 (300)
Q Consensus       225 ~~-v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~  285 (300)
                      .. ...+++|||+++||.++.|.++++|+++++|+++++|.+|+|+++++.|.|+++...+.
T Consensus       377 ~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~~~  438 (448)
T PRK14357        377 DGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKEGW  438 (448)
T ss_pred             cccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEeccCc
Confidence            22 23579999999999999999999999999999999999999999999999998766655

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=3e-23  Score=195.14  Aligned_cols=190  Identities=20%  Similarity=0.381  Sum_probs=135.4

Q ss_pred             ceECCC-cEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779           70 SFIHPT-SIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII  148 (300)
Q Consensus        70 ~~I~~~-~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i  148 (300)
                      .+|+|. ++|++++.||+++.|++++.|.+++.||++|.|++++.|. ++.||++|.|++ +.+.+     +.||+++.|
T Consensus       253 ~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~~-----~~ig~~~~I  325 (458)
T PRK14354        253 TIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIEE-----SKVGDNVTV  325 (458)
T ss_pred             EEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEeC-----CEECCCcEE
Confidence            345654 5677777777777777777777777777777777777776 677778887774 44444     777777777


Q ss_pred             ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceec
Q 040779          149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA  228 (300)
Q Consensus       149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~  228 (300)
                      ++++.+..             ...||+++.+++++.+.       ++.|++++.+...+.+ .++.||+++.+++++.+.
T Consensus       326 g~~~~i~~-------------~~~Ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~  384 (458)
T PRK14354        326 GPFAHLRP-------------GSVIGEEVKIGNFVEIK-------KSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITV  384 (458)
T ss_pred             CCceEecC-------------CCEEeCCcEECCceEEe-------eeEECCCCEecceeee-cCcccCCceEEcCceeec
Confidence            77777632             24566677776666663       3444444444444333 234555555555554442


Q ss_pred             -------CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhh
Q 040779          229 -------GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRR  290 (300)
Q Consensus       229 -------~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~  290 (300)
                             .++.||+++++|.++.+.++++|+++++|+++|+|.+|+|+++++.|.|+   +.|++.|..
T Consensus       385 ~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~  450 (458)
T PRK14354        385 NYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARAR---QVNKEGYVK  450 (458)
T ss_pred             ccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccc---eecccchhh
Confidence                   26999999999999999999999999999999999999999999999877   455555543

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=8.2e-23  Score=192.70  Aligned_cols=189  Identities=19%  Similarity=0.281  Sum_probs=126.1

Q ss_pred             EcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeee
Q 040779           78 VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVK  157 (300)
Q Consensus        78 I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~  157 (300)
                      +.+.+.||+++.|++++.|.+++.||+++.|+++|.|. +++||++|.|++++++.+     +.||+++.+++++.+.. 
T Consensus       267 i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~-----~~ig~~~~ig~~~~i~~-  339 (481)
T PRK14358        267 IEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEG-----AEVGAGSDVGPFARLRP-  339 (481)
T ss_pred             ccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecC-----CeEeCceEECCccEEcC-
Confidence            35566666666666666666666666666666666664 566677777776666654     66666666666666621 


Q ss_pred             ecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-cCceEECCC
Q 040779          158 CQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-AGHVVVEDY  236 (300)
Q Consensus       158 ~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-~~~v~Ig~~  236 (300)
                                  ...||+++.+++++.+ .++.+..++.+|..+.+ .+++|++++.||.++.+...... .+++.||++
T Consensus       340 ------------~~~Ig~~~~Ig~~~~i-~~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~  405 (481)
T PRK14358        340 ------------GTVLGEGVHIGNFVET-KNARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAG  405 (481)
T ss_pred             ------------CcEECCCCEECCCEEE-CCceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCCEECCC
Confidence                        2456666666665554 22223334444433333 22445555555555544443222 346899999


Q ss_pred             cEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhh
Q 040779          237 THTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRR  290 (300)
Q Consensus       237 ~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~  290 (300)
                      +++|+++++.++++|+++++|+++++|++|+|++.++.+.   ..++|++++++
T Consensus       406 ~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~~---~~~~~~~~~~~  456 (481)
T PRK14358        406 VFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVAR---GKQRNLEGWSR  456 (481)
T ss_pred             eEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEec---ccceeccchhh
Confidence            9999999999999999999999999999999999998852   47888888876

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.91  E-value=5.9e-23  Score=183.24  Aligned_cols=186  Identities=25%  Similarity=0.368  Sum_probs=147.1

Q ss_pred             ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779           70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG  149 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig  149 (300)
                      ..|+|.+.|++++.|++++.|+++++|++++.||++++|++++.|+++++||++|.|++++.|..    .++||++|.|+
T Consensus        92 ~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~----~~~IG~~~~I~  167 (324)
T TIGR01853        92 AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYE----RVQLGKNVIIH  167 (324)
T ss_pred             CCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECC----CCEECCCCEEC
Confidence            45778888888888888888888888888888888999999999988999999999999999975    49999999999


Q ss_pred             cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC----cCcEeCCccEEccCc
Q 040779          150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA----HDCKIGNYNIFANNT  225 (300)
Q Consensus       150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~----~~v~Ig~~~~i~~~~  225 (300)
                      ++++|+.....+...       ..++...+...          ..+.||+++.|+.++++.    +++.||+++.+...+
T Consensus       168 ~~~vIg~~gfg~~~~-------~~~~~~~i~~~----------G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v  230 (324)
T TIGR01853       168 SGAVIGSDGFGYAHT-------ANGGHVKIPQI----------GRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLV  230 (324)
T ss_pred             CCcEECCCCccceec-------cCCcceecCcc----------ceEEECCCcEECCCCEEecCCcCcceecCCcEEccCc
Confidence            999997643222111       11223333321          233455555555555553    578899999999999


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeee
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGE  276 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~  276 (300)
                      .+.++++||+++.+++++.+.++++|++++++++++.|...  +++++++++.
T Consensus       231 ~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~  283 (324)
T TIGR01853       231 QIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK  283 (324)
T ss_pred             EECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccC
Confidence            99999999999999999999999999999999999999986  6999998875

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=6e-23  Score=193.00  Aligned_cols=170  Identities=16%  Similarity=0.240  Sum_probs=97.4

Q ss_pred             CEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCc
Q 040779           82 AIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDM  161 (300)
Q Consensus        82 ~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~  161 (300)
                      +.|++++.|.+++.|.+++.||++|.|++++.|. +++||++|.|++++.+..     ++||+++.|++++.+..     
T Consensus       270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~-----~~ig~~~~Ig~~~~i~~-----  338 (456)
T PRK14356        270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEG-----AEVGDGCSVGPYARLRP-----  338 (456)
T ss_pred             cEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcc-----cceecccEECCceEECC-----
Confidence            3333344444444444444445555555555554 455555555555555543     55555555555555521     


Q ss_pred             ccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-------cCceEEC
Q 040779          162 KYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-------AGHVVVE  234 (300)
Q Consensus       162 ~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-------~~~v~Ig  234 (300)
                              ...+|+++.+++++.+.       ++.|++++.+...+.++ ++.+|+++.|++++..       ..++.||
T Consensus       339 --------~~~ig~~~~ig~~~~i~-------~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~ig  402 (456)
T PRK14356        339 --------GAVLEEGARVGNFVEMK-------KAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIG  402 (456)
T ss_pred             --------CCEECCCCEecCCceee-------eeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEEC
Confidence                    12344444444443331       12233333332222222 2333333333333221       3469999


Q ss_pred             CCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeece
Q 040779          235 DYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA  278 (300)
Q Consensus       235 ~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa  278 (300)
                      +++++|.++.+.++++|+++++++++++|.+|+|+++++.|...
T Consensus       403 d~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~  446 (456)
T PRK14356        403 EGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGR  446 (456)
T ss_pred             CCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecc
Confidence            99999999999999999999999999999999999999998544

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.91  E-value=2e-22  Score=188.94  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      ..+++||+++++|+++++.++++|+++++|+++++|++|+|+++++.|.|.+..
T Consensus       378 ~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~  431 (446)
T PRK14353        378 KHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQET  431 (446)
T ss_pred             CCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceEe
Confidence            347999999999999999999999999999999999999999999999998753

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.89  E-value=2.5e-22  Score=159.42  Aligned_cols=143  Identities=23%  Similarity=0.346  Sum_probs=104.4

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |++.++|+|+|.|-+++.||+++.|++++.|+++.               +.+.||+++.|+++++|+.+..        
T Consensus        14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~---------------~~I~IG~~tNIQDg~ViH~~~~--------   70 (176)
T COG0663          14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV---------------EPIRIGARTNIQDGVVIHADPG--------   70 (176)
T ss_pred             CCCceEECCCCEEEEeEEECCCCEECCceEEEccC---------------CceEECCCceecCCeEEecCCC--------
Confidence            45666777777766677777777777777776543               1567777777777777765210        


Q ss_pred             eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779          146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT  225 (300)
Q Consensus       146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~  225 (300)
                                                                                       ..+.||+++.|++++
T Consensus        71 -----------------------------------------------------------------~p~~IG~~vtIGH~a   85 (176)
T COG0663          71 -----------------------------------------------------------------YPVTIGDDVTIGHGA   85 (176)
T ss_pred             -----------------------------------------------------------------CCeEECCCcEEcCcc
Confidence                                                                             223333333334444


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceE-EEecChhhhhhcCCCccc
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAV-LRGLNLEGLRRRGFNVTE  297 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~-~~~~~~~~~~~~~~~~~~  297 (300)
                      .+.+ |+||++|+||.+++|+.+++|+++|+|++||+|++  .+|+++++.|.||| +++++.++.+.-..+.+.
T Consensus        86 ivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~~  159 (176)
T COG0663          86 VVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAEN  159 (176)
T ss_pred             EEEE-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhHhhhhhHhHHH
Confidence            4444 99999999999999999999999999999999998  48999999999999 677888886665555544

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.88  E-value=2.7e-21  Score=180.50  Aligned_cols=200  Identities=16%  Similarity=0.181  Sum_probs=127.3

Q ss_pred             hhhhhhhccchhhHHHHHHHHHhhcccC-CcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCC
Q 040779           27 MSFLLLKVRRPCLSSLSTLFLRRLSTAL-PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDG  105 (300)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~  105 (300)
                      ..|+....|+.+.... .++.+.....+ ....    .-......++.+++.|.+.+.|++++.|++++.|+ ++.|+++
T Consensus       215 ~~w~dI~t~~dl~~a~-~~l~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~  288 (430)
T PRK14359        215 ENFMGVNSKFELAKAE-EIMQERIKKNAMKQGV----IMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAH  288 (430)
T ss_pred             CEEeCCCCHHHHHHHH-HHHHHHHHHHHHHcCC----EEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCC
Confidence            3477777777766553 23322221111 0000    01123455667777777778888888888888887 7888888


Q ss_pred             CEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEE
Q 040779          106 CLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSI  185 (300)
Q Consensus       106 ~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i  185 (300)
                      |.|++ +.+. +++||+++.|++++.|.+     +.||+++.+++.. +                    +++.++..   
T Consensus       289 ~~I~~-~~i~-~~~ig~~~~i~~~~~i~~-----~~ig~~~~i~~~~-~--------------------~~~~i~~~---  337 (430)
T PRK14359        289 SVIEE-SIIE-NSDVGPLAHIRPKSEIKN-----THIGNFVETKNAK-L--------------------NGVKAGHL---  337 (430)
T ss_pred             CEEec-cEEe-CCEECCCCEECCCcEEec-----cEEcCcEEEcccE-e--------------------cccccccc---
Confidence            88866 5554 777888888887777754     5666655555422 1                    22222222   


Q ss_pred             ecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-cCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779          186 HRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS  264 (300)
Q Consensus       186 ~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~  264 (300)
                               ++|++       +.|++++.||.++++..+... ..+++||+++++|.++.+.++++|+++++|+++++|.
T Consensus       338 ---------~~i~d-------~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~  401 (430)
T PRK14359        338 ---------SYLGD-------CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT  401 (430)
T ss_pred             ---------ccccC-------CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence                     22221       233333333443333332222 2368999999999999999999999999999999999


Q ss_pred             CCCCCCcEEee-eceE
Q 040779          265 QDVPKYSMVAG-ERAV  279 (300)
Q Consensus       265 ~~v~~~~~~~G-~Pa~  279 (300)
                      +|+|+++++.| .|++
T Consensus       402 ~~v~~~~~~~~~~~~~  417 (430)
T PRK14359        402 KDVPKGSLAISRAPQK  417 (430)
T ss_pred             cccCCCcEEEeccCce
Confidence            99999999877 5553

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.88  E-value=7.7e-21  Score=159.98  Aligned_cols=105  Identities=20%  Similarity=0.302  Sum_probs=86.4

Q ss_pred             ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCc
Q 040779          139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNY  218 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~  218 (300)
                      .+.|++++.+++++.+....         .....||+++.++.++.|      .+++.+|++++++.++.+..++.||++
T Consensus        92 ~v~Ig~~~~Ig~~~~i~~~~---------~~~~~Ig~~~~i~~~v~I------~~~~~ig~~~~i~~~~~i~~~~~Ig~~  156 (205)
T cd03352          92 GVIIGDDVEIGANTTIDRGA---------LGDTVIGDGTKIDNLVQI------AHNVRIGENCLIAAQVGIAGSTTIGDN  156 (205)
T ss_pred             eEEECCCEEECCCCEEeccc---------cCCeEECCCCEECCceEE------eCCCEECCCCEECCCCEEccccEECCC
Confidence            47888888888888774211         223567777777777766      578899999999999999999999999


Q ss_pred             cEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          219 NIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       219 ~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ++++.++.+..+++||+++++++++++.+  .++++.++.+.
T Consensus       157 ~~ig~~~~v~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~G~  196 (205)
T cd03352         157 VIIGGQVGIAGHLTIGDGVVIGAGSGVTS--IVPPGEYVSGT  196 (205)
T ss_pred             eEEcCCCEEeCCcEECCCCEEcCCCEEee--ECCCCCEEEee
Confidence            99999999999999999999999999995  57888877654

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.86  E-value=2.2e-20  Score=147.33  Aligned_cols=137  Identities=21%  Similarity=0.247  Sum_probs=98.0

Q ss_pred             ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779           70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG  149 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig  149 (300)
                      .+|+|+++|++++.|++++.|.+.+++..++.||+++.|++++.|.++++||++|.|++++.+...              
T Consensus         2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~--------------   67 (139)
T cd03350           2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGV--------------   67 (139)
T ss_pred             cccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCc--------------
Confidence            356777777777777777777777777777777777777777777666677777766666665430              


Q ss_pred             cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecC
Q 040779          150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG  229 (300)
Q Consensus       150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~  229 (300)
                          +.                                      .             ...+++.|++++++++++.+.+
T Consensus        68 ----~~--------------------------------------~-------------~~~~~v~Ig~~~~Ig~~a~I~~   92 (139)
T cd03350          68 ----LE--------------------------------------P-------------LQATPVIIEDDVFIGANCEVVE   92 (139)
T ss_pred             ----cc--------------------------------------c-------------cccCCeEECCCCEECCCCEECC
Confidence                00                                      0             0012344444444555555666


Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCC-cEEeeece
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY-SMVAGERA  278 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~-~~~~G~Pa  278 (300)
                      ++.||++++|+++++|.++++|+++   +++++|.||+|++ ++++|+|+
T Consensus        93 gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~~~~~g~~~  139 (139)
T cd03350          93 GVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGSVVVAGSLP  139 (139)
T ss_pred             CCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCCEEecccCC
Confidence            7788888888888888888999998   9999999999999 99999985

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.85  E-value=3.2e-20  Score=157.86  Aligned_cols=61  Identities=26%  Similarity=0.418  Sum_probs=54.6

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecChhhhh
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      .+++||+++++|+++++.++++|+++++|+++++|.+|+|+++++.|+||| +++++++.+.
T Consensus       159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~~~~~~~  220 (231)
T TIGR03532       159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQVDEKTKD  220 (231)
T ss_pred             CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccCChhHhH
Confidence            468899999999999999999999999999999999999999999999999 5666665543

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.85  E-value=1.6e-19  Score=169.83  Aligned_cols=178  Identities=15%  Similarity=0.149  Sum_probs=145.1

Q ss_pred             CCcc-eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           54 LPHV-YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        54 ~~~~-~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      +++. ..|++.+.|++++.|++++.|.+++.||++|.|++++.|. ++.||+++.|++++.+. ++.|++++.|++++.+
T Consensus       258 i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~-~~~i~~~~~ig~~~~i  335 (459)
T PRK14355        258 IDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLE-DSVVGDDVAIGPMAHL  335 (459)
T ss_pred             ECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEe-CCEECCCCEECCCCEE
Confidence            4454 4688899999999999999999999999999999999997 79999999999999997 8999999999999998


Q ss_pred             ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC--
Q 040779          133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA--  210 (300)
Q Consensus       133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~--  210 (300)
                      ..    .+.|++++.++.++.++              .+.||+++.+...+.+       .++.||+++.|+.++.+.  
T Consensus       336 ~~----~~~i~~~~~ig~~~~~~--------------~~~ig~~~~~~~~~~i-------g~~~ig~~~~ig~~~~~~~~  390 (459)
T PRK14355        336 RP----GTELSAHVKIGNFVETK--------------KIVMGEGSKASHLTYL-------GDATIGRNVNIGCGTITCNY  390 (459)
T ss_pred             CC----CCEeCCCCEECCCcccc--------------CCEECCCceeeeeccc-------cCCEECCCCEEccceeecCc
Confidence            76    37888888888877552              1345555555433333       246667777776666542  


Q ss_pred             -----cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          211 -----HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       211 -----~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                           .++.||++++++.++.+..++.||++++|+++++|.+  .+++++++.++
T Consensus       391 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~--~v~~~~~~~~~  443 (459)
T PRK14355        391 DGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTK--DVPPDSLAIAR  443 (459)
T ss_pred             CCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcc--cCCCCcEEEec
Confidence                 4688999999999999999999999999999999996  48888877653

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.84  E-value=9.2e-20  Score=172.01  Aligned_cols=191  Identities=17%  Similarity=0.200  Sum_probs=153.5

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG  138 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~  138 (300)
                      .+.+.+.||+++.|++++.|.+++.||+++.|+++|.|. +++|+++|.|++++.|. ++.||+++.|++++.+..    
T Consensus       266 ~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~-~~~ig~~~~ig~~~~i~~----  339 (481)
T PRK14358        266 LIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLE-GAEVGAGSDVGPFARLRP----  339 (481)
T ss_pred             eccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceec-CCeEeCceEECCccEEcC----
Confidence            357778899999999999999999999999999999996 79999999999999997 799999999999999975    


Q ss_pred             ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-------c
Q 040779          139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-------H  211 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-------~  211 (300)
                      .+.||+++.+++++.+..              ..|++++.++..+.+       .+++||++|.|+.++.+.       +
T Consensus       340 ~~~Ig~~~~Ig~~~~i~~--------------~~i~~~~~ig~~~~~-------~~~~ig~~~~ig~~~~i~~~~~~~~~  398 (481)
T PRK14358        340 GTVLGEGVHIGNFVETKN--------------ARLDAGVKAGHLAYL-------GDVTIGAETNVGAGTIVANFDGVNKH  398 (481)
T ss_pred             CcEECCCCEECCCEEECC--------------ceecCCcccCceEEE-------CCeEEcCCceEcCCEEEeCCCCccCC
Confidence            388999999999888731              345555555544444       345666666666665553       4


Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE-EeeeceE
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM-VAGERAV  279 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~-~~G~Pa~  279 (300)
                      ++.||++++++.++.+..+++||+++++++++++.++  +++++++... .+++++.++.. +.+.|.+
T Consensus       399 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~--v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  464 (481)
T PRK14358        399 QSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDD--VPEGAMAVAR-GKQRNLEGWSRRYWAGRHE  464 (481)
T ss_pred             CCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecc--cCCCCEEEec-ccceeccchhhhhccCchH
Confidence            6899999999999999999999999999999999975  7788877764 37778877643 3333443

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.83  E-value=6e-20  Score=152.24  Aligned_cols=61  Identities=21%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC--CCCcEEeeeceE-EEecChhhhh
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV--PKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v--~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      ++++||++++||.++++.++++|+++++|+++|+|++++  |++++++|+||| +++++.+..+
T Consensus        87 ~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~  150 (196)
T PRK13627         87 HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELH  150 (196)
T ss_pred             eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHH
Confidence            357899999999999999999999999999999999986  999999999999 5666665543

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.82  E-value=6.1e-19  Score=147.02  Aligned_cols=166  Identities=17%  Similarity=0.226  Sum_probs=105.5

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++.+.|++.+.|+++++|+++++|.+. .|++++.|++++.+. ++.+++++.|++++.|..++.|++++.|+.++.+.
T Consensus        24 I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~  101 (193)
T cd03353          24 IDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIE-GAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIK  101 (193)
T ss_pred             ECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEE-eeEECCCCEECCccEEcCccEECCCCEECCcEEEe
Confidence            3444444555555555555555555532 666666666666666 57778888888888887777888888888777776


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE-CcC
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-AHD  212 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-~~~  212 (300)
                      +     +.|++++.+++.+.++              ...||+++.+++++.+..                  .... ...
T Consensus       102 ~-----s~ig~~~~i~~~~~i~--------------~~~Ig~~~~ig~~~~~~~------------------~~~~~~~~  144 (193)
T cd03353         102 K-----STIGEGSKANHLSYLG--------------DAEIGEGVNIGAGTITCN------------------YDGVNKHR  144 (193)
T ss_pred             c-----ceEcCCCEecccceec--------------ccEECCCCEEcCceEEec------------------cCCccccC
Confidence            5     6777777777666552              134444444444443321                  1100 134


Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +.||++++++.++.+..+++||++++++++++|.+  .+++++++.+.
T Consensus       145 ~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~--~v~~~~~v~~~  190 (193)
T cd03353         145 TVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITK--DVPPGALAIAR  190 (193)
T ss_pred             CEECCCeEEccCCEEeCCcEECCCcEECCCCEEcc--ccCCCCEEEec
Confidence            66666666677777777778888888888888886  47888777654

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.81  E-value=1.9e-18  Score=140.13  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      +++|++++++|.++.+.+++.|+++++++++++|
T Consensus       129 ~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV  162 (163)
T cd05636         129 GAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV  162 (163)
T ss_pred             CcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence            5899999999999999999999999999999987

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.81  E-value=7.1e-19  Score=165.07  Aligned_cols=173  Identities=16%  Similarity=0.197  Sum_probs=133.9

Q ss_pred             eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCC
Q 040779           58 YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLP  137 (300)
Q Consensus        58 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~  137 (300)
                      ..+++.++|++++.|+|+++|.+++.||+++.|++++.|. ++.|+++|.|.. +.+. ++.|++++.|++++.+..   
T Consensus       250 ~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~-~~v~-~sii~~~~~ig~~~~i~~---  323 (448)
T PRK14357        250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIR-SECE-KSVIEDDVSVGPFSRLRE---  323 (448)
T ss_pred             EEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEee-eEEE-EEEEeCCcEECCCcEECC---
Confidence            4677778888888888888888888888888888888887 588888888853 4555 788889999988888864   


Q ss_pred             CceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-------
Q 040779          138 GQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-------  210 (300)
Q Consensus       138 ~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-------  210 (300)
                       .+.|++++.|++++.+..              ..||+++.+...+.+.       ++.||++++|+.++.+.       
T Consensus       324 -~~~ig~~~~Ig~~~~i~~--------------~~ig~~~~~~~~~~~~-------~~~Ig~~~~ig~~~~~~~~~~~~~  381 (448)
T PRK14357        324 -GTVLKKSVKIGNFVEIKK--------------STIGENTKAQHLTYLG-------DATVGKNVNIGAGTITCNYDGKKK  381 (448)
T ss_pred             -cccccCCcEecCceeeec--------------cEEcCCcCcccccccc-------CcEECCCcEECCCccccccccccc
Confidence             378888888888877631              3455555554444442       45666666666665543       


Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +.+.||+++++++++.+..+++||++++||++++|.++  +++++++.++
T Consensus       382 ~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g~  429 (448)
T PRK14357        382 NPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED--VPPYSLALGR  429 (448)
T ss_pred             CCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEcc
Confidence            46899999999999999999999999999999999985  8888887764

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.80  E-value=3.6e-18  Score=161.55  Aligned_cols=165  Identities=17%  Similarity=0.195  Sum_probs=92.4

Q ss_pred             CcceecCccceeCCCceECCCcEEcCCCEECCCC-----EECCCCEEC----CCcEECCCCEECCCcEEeCCcEECCCcE
Q 040779           55 PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGV-----SVGPFCTIG----SAAKLGDGCLLYPSSHIFGNTELGDHCI  125 (300)
Q Consensus        55 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~-----~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~~IG~~~~  125 (300)
                      .+...|++.+.|++++.|.+++.|++++.|+.++     .|++++.|.    .++.|++++.|++++.+..++.||+++.
T Consensus       269 ~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~  348 (482)
T PRK14352        269 DVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGK  348 (482)
T ss_pred             eCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCE
Confidence            4444444444444444444444444444444333     334444432    2455666666666666666666666666


Q ss_pred             EccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEcc
Q 040779          126 LMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMG  205 (300)
Q Consensus       126 I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~  205 (300)
                      ++.++.+..     +.|++++.+++.+.++              ...||+++.|+.++.+....          +     
T Consensus       349 ig~~~~~~~-----~~I~~~~~i~~~~~i~--------------~~~Ig~~~~IG~~~~i~~~~----------~-----  394 (482)
T PRK14352        349 LGAFVETKN-----ATIGRGTKVPHLTYVG--------------DADIGEHSNIGASSVFVNYD----------G-----  394 (482)
T ss_pred             ECCcEEEcc-----cEECCCcEEccCceec--------------ccEECCCcEECCCcEEeccc----------c-----
Confidence            666665544     6667777776665552              13566666666555442210          0     


Q ss_pred             ccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE
Q 040779          206 SCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI  257 (300)
Q Consensus       206 ~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv  257 (300)
                        .-..++.||+++.++.++.+..+++||++++||++++|.++  +++++++
T Consensus       395 --~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~--v~~~~~~  442 (482)
T PRK14352        395 --VNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRED--VPPGALA  442 (482)
T ss_pred             --ccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCC--CCCCcEE
Confidence              00234566666666667777777888888888888888875  5666643

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.80  E-value=5.3e-18  Score=159.27  Aligned_cols=171  Identities=18%  Similarity=0.279  Sum_probs=130.5

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG  138 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~  138 (300)
                      .+++.+.+++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|+ .+.+. ++.||+++.|++++.|.+    
T Consensus       258 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~-~~~I~~~~~I~-~~~i~-~~~ig~~~~I~~~~~I~~----  330 (450)
T PRK14360        258 TISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIE-NSQIGENVTVL-YSVVS-DSQIGDGVKIGPYAHLRP----  330 (450)
T ss_pred             EEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEE-EEEEcCCCEEe-eeEEe-eccccCCcEECCCCEECC----
Confidence            355666677777777777777777777777777777776 67778888884 45555 788999999999999975    


Q ss_pred             ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-------c
Q 040779          139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-------H  211 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-------~  211 (300)
                      .+.|++++.|++++.+..              ..+++++.+..++.+       .++.||++|.|+.++.+.       .
T Consensus       331 ~~~Ig~~~~Ig~~~~i~~--------------~~i~~~~~i~~~~~~-------~~~~i~~~~~iG~~~~~~~~~~~~~~  389 (450)
T PRK14360        331 EAQIGSNCRIGNFVEIKK--------------SQLGEGSKVNHLSYI-------GDATLGEQVNIGAGTITANYDGVKKH  389 (450)
T ss_pred             CCEEeCceEECCCEEEec--------------cccCCCcEeccceec-------CCceecCCcEECccceeccccccccC
Confidence            388999999999888832              456666666555444       245555555555555543       3


Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      .+.||+++.++.++.+..+++||++++++++++|.+  .|++++++.+
T Consensus       390 ~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~--~~~~~~~~~g  435 (450)
T PRK14360        390 RTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITK--DVPDNSLAIA  435 (450)
T ss_pred             CcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECc--cCCCCCEEEe
Confidence            789999999999999999999999999999999998  5888888766

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.80  E-value=1.6e-18  Score=144.09  Aligned_cols=58  Identities=29%  Similarity=0.467  Sum_probs=53.3

Q ss_pred             ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-EecC
Q 040779          227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGLN  284 (300)
Q Consensus       227 v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~~  284 (300)
                      ..++++||++||||.+++|.++++|+++++|+++|+|.+|+|++++++|+|||+ +++.
T Consensus       128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~  186 (203)
T PRK09527        128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN  186 (203)
T ss_pred             ccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence            446899999999999999999999999999999999999999999999999994 5443

>PLN02296 carbonate dehydratase

Probab=99.79  E-value=7.1e-19  Score=152.20  Aligned_cols=61  Identities=25%  Similarity=0.334  Sum_probs=53.9

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceE-EEecChhhhh
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      ++++||++|+||.+++|.++++|+++++|+++|+|.++  +|++++++|+||| ++++..+...
T Consensus       135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~~  198 (269)
T PLN02296        135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIA  198 (269)
T ss_pred             cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHHH
Confidence            34789999999999999999999999999999999998  8999999999999 5666665543

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.79  E-value=7.6e-18  Score=158.53  Aligned_cols=173  Identities=20%  Similarity=0.251  Sum_probs=141.0

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      ...|++.+.|++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|++ +.+. ++.||++|.|++++.|..  
T Consensus       259 ~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~-~~~ig~~~~Ig~~~~i~~--  333 (458)
T PRK14354        259 STYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIE-ESKVGDNVTVGPFAHLRP--  333 (458)
T ss_pred             eEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEe-CCEECCCcEECCceEecC--
Confidence            35678888888999999999998889999999999999997 689999999985 5555 899999999999999975  


Q ss_pred             CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC------
Q 040779          137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA------  210 (300)
Q Consensus       137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~------  210 (300)
                        .+.||+++.+++++.+..              ..|++++.+...+.+       ..+.||+++.++.++.+.      
T Consensus       334 --~~~Ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~~-------~~~~ig~~~~ig~~~~~~~~~~~~  390 (458)
T PRK14354        334 --GSVIGEEVKIGNFVEIKK--------------STIGEGTKVSHLTYI-------GDAEVGENVNIGCGTITVNYDGKN  390 (458)
T ss_pred             --CCEEeCCcEECCceEEee--------------eEECCCCEecceeee-------cCcccCCceEEcCceeeccccccc
Confidence              388999999999998842              567777777766665       235566666666555553      


Q ss_pred             -cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          211 -HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       211 -~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                       ..+.|+++++++.++.+..++.||+++++|+++.|.++  |++++++.+
T Consensus       391 ~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~~  438 (458)
T PRK14354        391 KFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKD--VPEDALAIA  438 (458)
T ss_pred             ccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCC--CCCCCEEEe
Confidence             26889999999999999999999999999999999975  777777664

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.79  E-value=2.7e-18  Score=161.31  Aligned_cols=72  Identities=21%  Similarity=0.357  Sum_probs=39.0

Q ss_pred             EEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           77 IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        77 ~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      ++.+.+.||+++.|++++.|++++.||+++.|++++.|. ++.||++|.|++++.+..     +.|++++.|++++.+
T Consensus       257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~-----~~ig~~~~Ig~~~~i  328 (451)
T TIGR01173       257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEG-----SEIGEGCDVGPFARL  328 (451)
T ss_pred             EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEec-----ccccCCcEECCeeEE
Confidence            344445555555555555555555555555555555554 455555555555555554     555555555555554

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.79  E-value=2.7e-18  Score=143.55  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=97.3

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      +++++.|++++.|. ++.||+++.|++++.|. +++||++++|++++.+. ++.||++|.|++++.+...    ....+ 
T Consensus         5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~-~~~IG~~~~I~~~v~I~~~----~h~~~-   76 (204)
T TIGR03308         5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINAT----NHPME-   76 (204)
T ss_pred             cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEe-eeEECCCCEECCCCEECCC----CCCCC-
Confidence            56677777777775 46777777777777776 56666666666666665 4566666666666555431    00000 


Q ss_pred             eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779          146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT  225 (300)
Q Consensus       146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~  225 (300)
                           +                         ......+..  ........              ..+...       ...
T Consensus        77 -----~-------------------------~s~~~~~~~--~~~~~~~~--------------~~~~~~-------~~~  103 (204)
T TIGR03308        77 -----R-------------------------PTLHHFTYR--AAMYFDDA--------------SDDADF-------FAW  103 (204)
T ss_pred             -----c-------------------------ccccccccc--cccccccc--------------cccccc-------ccc
Confidence                 0                         000000000  00000000              000000       011


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      ....+++||++++||.+++|.++++|+++++|+++++|.+|+|++++++|+||++
T Consensus       104 ~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~  158 (204)
T TIGR03308       104 RRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKL  158 (204)
T ss_pred             ccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchH
Confidence            2456899999999999999999999999999999999999999999999999985

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.79  E-value=1e-18  Score=144.40  Aligned_cols=60  Identities=22%  Similarity=0.300  Sum_probs=50.0

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceEE-EecChhhhh
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAVL-RGLNLEGLR  289 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~~-~~~~~~~~~  289 (300)
                      +++|+++++||.++.+.+++.|+++++|+++++|.+  ++|++++++|+|||+ +.+..+.+.
T Consensus        86 ~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~~~~  148 (192)
T TIGR02287        86 GCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQELA  148 (192)
T ss_pred             CCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHHHHH
Confidence            477888888888888888899999999999999998  579999999999995 556665544

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.79  E-value=5.4e-18  Score=136.23  Aligned_cols=57  Identities=25%  Similarity=0.303  Sum_probs=49.6

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceEE-EecChh
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAVL-RGLNLE  286 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~~-~~~~~~  286 (300)
                      +++||++++|+.++++.++++|+++++|+++++|.+  ++|+++++.|+|||. ++++.+
T Consensus        78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~  137 (155)
T cd04745          78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDE  137 (155)
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHH
Confidence            378888999999999999999999999999999998  689999999999994 555543

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.78  E-value=6.5e-18  Score=136.77  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             CCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEec
Q 040779          216 GNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGL  283 (300)
Q Consensus       216 g~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~  283 (300)
                      |+++.+..++.+.+ ++||++||||.++.|.+++.|+++++|+++++|.++  +|+++++.|+|+..+-.
T Consensus        70 G~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~  138 (164)
T cd04646          70 GSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ  138 (164)
T ss_pred             CCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec
Confidence            33333333444433 888888899999999889999999999999999988  89999999998875433

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02472 uncharacterized protein

Probab=99.77  E-value=3.7e-18  Score=145.83  Aligned_cols=75  Identities=23%  Similarity=0.304  Sum_probs=58.6

Q ss_pred             eCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhhhhh
Q 040779          215 IGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEGLRR  290 (300)
Q Consensus       215 Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~~~~  290 (300)
                      ||+++.|++++.+ .+++|+++++||.+++|.+++.|+++++|+++++|+  .++|++.++.|+||| ++.++.+..+.
T Consensus       129 IG~~v~IG~~s~L-~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~~~~~~  206 (246)
T PLN02472        129 IDRYVTIGAYSLL-RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTNEETLE  206 (246)
T ss_pred             ECCCCEECCCcEE-CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCHHHHHH
Confidence            3333333344444 357889999999999999999999999999999999  468999999999999 57777655544

>PRK10502 putative acyl transferase; Provisional

Probab=99.77  E-value=5.8e-18  Score=139.42  Aligned_cols=54  Identities=22%  Similarity=0.316  Sum_probs=51.3

Q ss_pred             ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       227 v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      +.++++|||++|||.++.|.++++|+++++|+++++|++|+|++++++|+|||.
T Consensus       121 ~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~  174 (182)
T PRK10502        121 NTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVP  174 (182)
T ss_pred             ccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceE
Confidence            457899999999999999999999999999999999999999999999999994

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.77  E-value=1.2e-17  Score=157.12  Aligned_cols=156  Identities=15%  Similarity=0.248  Sum_probs=90.6

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG  143 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig  143 (300)
                      +.|++++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.|..++.+++++.|++++.+..     +.|+
T Consensus       284 v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~-----~~i~  356 (456)
T PRK09451        284 VTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVE-DANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKK-----ARLG  356 (456)
T ss_pred             cEECCCCEECCCceEe-cCEEcCCCEEcCCEEEe-CCccCCCcEecCceEEeCCCEECCCceeccceeeec-----eeeC
Confidence            3444444444444443 45555555555555555 466667777777777766777777777777766654     6666


Q ss_pred             cceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-cCcEeCCccEEc
Q 040779          144 CNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-HDCKIGNYNIFA  222 (300)
Q Consensus       144 ~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-~~v~Ig~~~~i~  222 (300)
                      +++.+++.+.++              ...||+++.|++++.+                  ..+.... ..+.||++++++
T Consensus       357 ~~~~~~~~~~~g--------------~~~ig~~~~ig~~~~~------------------~~~~~~~~~~~~Igd~~~ig  404 (456)
T PRK09451        357 KGSKAGHLTYLG--------------DAEIGDNVNIGAGTIT------------------CNYDGANKFKTIIGDDVFVG  404 (456)
T ss_pred             CCCccCcccccc--------------ccEECCCCEEcCCeEE------------------ecccCcccCCCEECCCcEEC
Confidence            666666555442              1233333333333322                  1111111 136666677777


Q ss_pred             cCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       223 ~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .++.+..++.||++++++++++|.++  +++++++-++
T Consensus       405 ~~~~i~~~~~ig~~~~i~~gs~v~~~--v~~~~~~~~~  440 (456)
T PRK09451        405 SDTQLVAPVTVGKGATIGAGTTVTRD--VAENELVISR  440 (456)
T ss_pred             CCCEEeCCcEECCCCEECCCCEEccc--cCCCCEEEec
Confidence            77777777777888888888887765  6777666444

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.76  E-value=6.3e-18  Score=135.48  Aligned_cols=68  Identities=31%  Similarity=0.456  Sum_probs=53.3

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceE-EEecChhhhhhcCCCcccc
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAV-LRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~-~~~~~~~~~~~~~~~~~~~  298 (300)
                      +.||++++++.++.+.+++.|++++++++++.+.+  ++|++++++|+||+ ++.+..+.++...+++|.+
T Consensus        79 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~~~~~~~~~~~~~  149 (154)
T cd04650          79 AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEY  149 (154)
T ss_pred             cEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHHHHHHHHHHHHHH
Confidence            56777777777777777888889999999988885  68999999999999 5666666666566655544

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.76  E-value=5.8e-17  Score=131.39  Aligned_cols=95  Identities=24%  Similarity=0.330  Sum_probs=75.6

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +.+.+.+.+.+.+++++.|+++++|.+++.|++++.|++++.|.+++.|++++.|++++.|. ++.|++++.|++++.+.
T Consensus         8 ~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~siig~~~~I~~~~~i~   86 (163)
T cd05636           8 VEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-NSIIMDGTKVPHLNYVG   86 (163)
T ss_pred             cCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe-eeEecCCCEeccCCEEe
Confidence            34455666677788888888888888888888888888888888778888888888888886 68888888888888876


Q ss_pred             cCCCCceeeccceEEccccEE
Q 040779          134 DDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      +     ++|++++.+++++.+
T Consensus        87 ~-----siIg~~~~I~~~~~i  102 (163)
T cd05636          87 D-----SVLGENVNLGAGTIT  102 (163)
T ss_pred             c-----CEECCCCEECCCcEE
Confidence            5     778888888887776

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=9e-18  Score=149.10  Aligned_cols=154  Identities=17%  Similarity=0.251  Sum_probs=89.3

Q ss_pred             eeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeecc
Q 040779           65 SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGC  144 (300)
Q Consensus        65 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~  144 (300)
                      +||+++.|+|++.|. ++.|++|+.|.++++|. ++++++++.|||.++|++++.++++++||..+.+..     +.||+
T Consensus       288 ~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~-----a~ig~  360 (460)
T COG1207         288 VIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK-----ATIGK  360 (460)
T ss_pred             EECCceEECCCcEEE-eeEEcCCCEEEecceee-ccEecCCcccCCccccCCcCcccCCCeEeeeEEEec-----ccccC
Confidence            444445555555544 46666666666666666 577777777777777777777777777777777766     67777


Q ss_pred             ceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE-CcCcEeCCccEEcc
Q 040779          145 NNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-AHDCKIGNYNIFAN  223 (300)
Q Consensus       145 ~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-~~~v~Ig~~~~i~~  223 (300)
                      ++..++-++||.              ..||+++.||.+++                  .+.+--. .+.+.||++++|+.
T Consensus       361 gsKa~HLtYlGD--------------A~iG~~~NiGAGtI------------------tcNYDG~nK~~T~IGd~vFiGS  408 (460)
T COG1207         361 GSKAGHLTYLGD--------------AEIGENVNIGAGTI------------------TCNYDGKNKFKTIIGDNVFIGS  408 (460)
T ss_pred             Cccccceeeecc--------------ceecCCceeccceE------------------EEcCCCcccceeeecCCcEEcc
Confidence            777777666642              23333333332222                  1111111 13455555666666


Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      ++.+-.|+.||++++|+++++|.++  +|+++..-+
T Consensus       409 ns~LVAPV~IGd~a~iaAGStIT~D--Vp~~aLai~  442 (460)
T COG1207         409 NSQLVAPVTIGDGATIAAGSTITKD--VPEGALAIS  442 (460)
T ss_pred             CCcEEeeEEecCCcEEcccceEccc--CCCCceeEe
Confidence            6666666666666777777666654  555555433

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.75  E-value=5.2e-17  Score=132.08  Aligned_cols=81  Identities=15%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM  272 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~  272 (300)
                      +.+.||++++++.++.+..++.||+++.++.++.+. +++||+++++|.++.+. ++.|++++++++++++.++.|.+.+
T Consensus        63 ~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~  140 (167)
T cd00710          63 YSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADAL  140 (167)
T ss_pred             CCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCccccc
Confidence            345666666666666666677777777777777775 58999999999999885 6899999999999999998887765


Q ss_pred             Eee
Q 040779          273 VAG  275 (300)
Q Consensus       273 ~~G  275 (300)
                      -..
T Consensus       141 ~~~  143 (167)
T cd00710         141 PDV  143 (167)
T ss_pred             ccC
Confidence            443

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.75  E-value=3.8e-17  Score=135.74  Aligned_cols=59  Identities=25%  Similarity=0.437  Sum_probs=54.4

Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecChh
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNLE  286 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~~  286 (300)
                      .++++||+++++|.++.+.++++|+++++|+++|+|++++|++++++|.||| +++++.+
T Consensus       128 ~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~~~~  187 (192)
T PRK09677        128 SSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKYNHE  187 (192)
T ss_pred             cCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEeccCcc
Confidence            4689999999999999999999999999999999999999999999999999 5666554

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.74  E-value=1.3e-16  Score=148.94  Aligned_cols=195  Identities=12%  Similarity=0.095  Sum_probs=116.1

Q ss_pred             ccccchhhhhhhccchhhHHHHHHHHHh-hcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCc
Q 040779           22 TAESGMSFLLLKVRRPCLSSLSTLFLRR-LSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAA  100 (300)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~  100 (300)
                      +..-+-+|-+......+.......++.. ......+...+.+++.|.+.+.|++++.|++++.|+ ++.|+++|.|++ +
T Consensus       217 w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~  294 (430)
T PRK14359        217 FMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-S  294 (430)
T ss_pred             EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-c
Confidence            3334445555444444444433322211 111234455566666677777777777777777666 667777776654 4


Q ss_pred             EECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEEC
Q 040779          101 KLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFR  180 (300)
Q Consensus       101 ~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~  180 (300)
                      .+ .++.|++++.|++++.| ++++|++++.+.+     ..+ +++.+++.+.++.              ..||+++.++
T Consensus       295 ~i-~~~~ig~~~~i~~~~~i-~~~~ig~~~~i~~-----~~~-~~~~i~~~~~i~d--------------~~Ig~~~~ig  352 (430)
T PRK14359        295 II-ENSDVGPLAHIRPKSEI-KNTHIGNFVETKN-----AKL-NGVKAGHLSYLGD--------------CEIDEGTNIG  352 (430)
T ss_pred             EE-eCCEECCCCEECCCcEE-eccEEcCcEEEcc-----cEe-ccccccccccccC--------------CEECCCCEEC
Confidence            44 35555555555555555 3566666666655     555 6777777777731              2344444444


Q ss_pred             CCeEEecCCccCCceEECCCCEEccccEE-CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          181 EHVSIHRSSKSGDRTVIGDNNLIMGSCHI-AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       181 ~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      .++.+                  +.+... ...+.||++++++.++.+..+++||++++||++++|.++  +++++++.+
T Consensus       353 ~~~~~------------------~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~~  412 (430)
T PRK14359        353 AGTIT------------------CNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD--VPKGSLAIS  412 (430)
T ss_pred             CCceE------------------ccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc--cCCCcEEEe
Confidence            33333                  111111 124778888888888888889999999999999999976  677777755


Q ss_pred             C
Q 040779          260 G  260 (300)
Q Consensus       260 ~  260 (300)
                      +
T Consensus       413 ~  413 (430)
T PRK14359        413 R  413 (430)
T ss_pred             c
Confidence            4

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.74  E-value=3.5e-17  Score=133.32  Aligned_cols=55  Identities=33%  Similarity=0.514  Sum_probs=51.9

Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      ...++++||++||||.+++|.++++|+++++|+++|+|++|+|++++++|+|||+
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkv  168 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARV  168 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEE
Confidence            4557899999999999999999999999999999999999999999999999985

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.73  E-value=9.7e-17  Score=136.98  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=35.8

Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEe--eec
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA--GER  277 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~--G~P  277 (300)
                      +.|++++.|++++.+.++++||++++||++++|.++++|.|..   +++++.+++|+++++.  +.|
T Consensus       174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~vp~~svv~~g~~p  237 (269)
T TIGR00965       174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGRVPAGSVVVSGNLP  237 (269)
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeeeecCCCcEEecCCee
Confidence            3444444444444445555566666666666666666666655   5666666777776665  355

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.73  E-value=1.1e-16  Score=129.63  Aligned_cols=74  Identities=20%  Similarity=0.353  Sum_probs=58.2

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV  267 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v  267 (300)
                      ..+.||+++.+..++.+.+ +.||++++++.++.+.++++||+++++|++++|.+++.++++++++++..+.++.
T Consensus        65 ~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~  138 (164)
T cd04646          65 KPMIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ  138 (164)
T ss_pred             CCeEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec
Confidence            3444555555555555544 7777788888888888899999999999999999999999999999998887754

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.73  E-value=4.5e-17  Score=133.68  Aligned_cols=88  Identities=25%  Similarity=0.324  Sum_probs=72.1

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV  273 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~  273 (300)
                      .++||+++.|++++.+....+..+......+..+.+++.||++||||++++|.++++|+++++|+++++|++|+|+++++
T Consensus        93 ~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~  172 (183)
T PRK10092         93 PIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVV  172 (183)
T ss_pred             eEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccccCCCcEE
Confidence            34777777777777776444433333334455677899999999999999999999999999999999999999999999


Q ss_pred             eeeceEEE
Q 040779          274 AGERAVLR  281 (300)
Q Consensus       274 ~G~Pa~~~  281 (300)
                      +|+|||+.
T Consensus       173 ~G~PAr~i  180 (183)
T PRK10092        173 GGNPARII  180 (183)
T ss_pred             EecCcEEe
Confidence            99999964

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.73  E-value=1.2e-16  Score=137.59  Aligned_cols=66  Identities=21%  Similarity=0.226  Sum_probs=36.5

Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEe-e-----------eceE-EEecChhhhhhc
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA-G-----------ERAV-LRGLNLEGLRRR  291 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~-G-----------~Pa~-~~~~~~~~~~~~  291 (300)
                      +.+..+++||++++|+++++|.+++.|.+.   .+++++.+++|+++++. |           .||+ +++++.+...+.
T Consensus       189 s~I~~Gv~IGdgavIgag~vV~~gt~I~~~---~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~  265 (272)
T PRK11830        189 SEVVEGVIVEEGSVLGMGVFLGQSTKIYDR---ETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVDAKTRSKT  265 (272)
T ss_pred             CEEcCCCEECCCCEEcCCCEEcCCeEECcC---CCCcEEeeecCCCcEEecCcccccCCCcCCcCcEEEEEccccchhhh
Confidence            333444455555555555555555555554   25566666666666654 5           3888 566666555444


Q ss_pred             CC
Q 040779          292 GF  293 (300)
Q Consensus       292 ~~  293 (300)
                      ..
T Consensus       266 ~~  267 (272)
T PRK11830        266 SI  267 (272)
T ss_pred             hh
Confidence            43

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.72  E-value=6.9e-17  Score=123.94  Aligned_cols=54  Identities=28%  Similarity=0.432  Sum_probs=51.0

Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      ..+++|+++++|+.++++.+++.|++++.|++++++++++|+++++.|+|||..
T Consensus        65 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~  118 (119)
T cd03358          65 LKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARII  118 (119)
T ss_pred             cCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCcCCCCeEEecCcceec
Confidence            456999999999999999999999999999999999999999999999999853

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.71  E-value=2.8e-16  Score=147.88  Aligned_cols=204  Identities=18%  Similarity=0.195  Sum_probs=150.3

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhcc-cC--------CcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECC
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLST-AL--------PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGS   98 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~   98 (300)
                      .|+.+..|..+.... .++...... .+        .....+++.+.+++++.|.+++.|.+++.||+++.|++++.|. 
T Consensus       226 ~~~~I~tp~dl~~a~-~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-  303 (456)
T PRK14356        226 NLLGVNTPAELVRSE-ELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-  303 (456)
T ss_pred             eEecCcCHHHHHHHH-HHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-
Confidence            466677777665432 333222111 11        2345566667777777777777777788899999999999997 


Q ss_pred             CcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccE
Q 040779           99 AAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNE  178 (300)
Q Consensus        99 ~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~  178 (300)
                      ++.|++++.|++++.|. +++||++|.|++++.|..    .+.+++++.+++++.+..              .++++++.
T Consensus       304 ~~~i~~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~----~~~ig~~~~ig~~~~i~~--------------~~i~~~~~  364 (456)
T PRK14356        304 DAVVSSGATIHSFSHLE-GAEVGDGCSVGPYARLRP----GAVLEEGARVGNFVEMKK--------------AVLGKGAK  364 (456)
T ss_pred             eeEECCCCEEeeeEEEc-ccceecccEECCceEECC----CCEECCCCEecCCceeee--------------eEecCCcE
Confidence            69999999999999996 999999999999999975    388999999999887732              34555555


Q ss_pred             ECCCeEEecCCccCCceEECCCCEEccccEE-------CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEE
Q 040779          179 FREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-------AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI  251 (300)
Q Consensus       179 i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-------~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I  251 (300)
                      +...+++      + ++.||+++.|+.++.+       ..++.||++++++.++.+..++.||++++++++++|.++  +
T Consensus       365 i~~~~~i------g-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~--~  435 (456)
T PRK14356        365 ANHLTYL------G-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKD--V  435 (456)
T ss_pred             ecccccc------c-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEecc--C
Confidence            5544443      2 4666666666666543       246899999999999999999999999999999999974  7


Q ss_pred             CCCcEEccCC
Q 040779          252 GSHSFIGGGS  261 (300)
Q Consensus       252 ~~~~vv~~~s  261 (300)
                      ++++++-+.+
T Consensus       436 ~~~~~~~~~~  445 (456)
T PRK14356        436 PDGSLAIARG  445 (456)
T ss_pred             CCCcEEEEec
Confidence            7777765543

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.71  E-value=1.7e-16  Score=132.79  Aligned_cols=103  Identities=30%  Similarity=0.457  Sum_probs=90.2

Q ss_pred             ccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCc
Q 040779          176 NNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHS  255 (300)
Q Consensus       176 ~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~  255 (300)
                      ++.+++++.|.+++.+..++.||+++.|..++.+.+++.|++++.++.++.+.++++|+++++++.++.+.+++.|++++
T Consensus        99 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~  178 (201)
T TIGR03570        99 SASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGA  178 (201)
T ss_pred             CCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCC
Confidence            33344444444444446788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCEECCCCCCCcEEeeece
Q 040779          256 FIGGGSVVSQDVPKYSMVAGERA  278 (300)
Q Consensus       256 vv~~~svv~~~v~~~~~~~G~Pa  278 (300)
                      ++++++++.+++|++++|.|+||
T Consensus       179 ~i~~~~~v~~~~~~~~~~~g~pa  201 (201)
T TIGR03570       179 IVGAGAVVTKDIPDGGVVVGVPA  201 (201)
T ss_pred             EECCCCEECCcCCCCCEEEeccC
Confidence            99999999999999999999997

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.70  E-value=3.1e-16  Score=118.02  Aligned_cols=103  Identities=23%  Similarity=0.296  Sum_probs=76.3

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.||+++.+++++.|..    ...++||+++.|+.++.+.....-   ..........+++.||++||++.++.+.++++
T Consensus         4 i~iG~~~~I~~~~~i~~----~~~i~IG~~~~I~~~~~I~~~~h~---~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~   76 (107)
T cd05825           4 LTIGDNSWIGEGVWIYN----LAPVTIGSDACISQGAYLCTGSHD---YRSPAFPLITAPIVIGDGAWVAAEAFVGPGVT   76 (107)
T ss_pred             EEECCCCEECCCCEEee----CCceEECCCCEECCCeEeecCCCC---CCcCccceecCCEEECCCCEECCCCEECCCCE
Confidence            45566666666666543    235666666666666666432110   00112345668899999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      |+++++|+++++|++|+|++++++|+|||.
T Consensus        77 Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~  106 (107)
T cd05825          77 IGEGAVVGARSVVVRDLPAWTVYAGNPAVP  106 (107)
T ss_pred             ECCCCEECCCCEEeCcCCCCCEEECCccEe
Confidence            999999999999999999999999999985

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=99.69  E-value=2.1e-16  Score=131.33  Aligned_cols=96  Identities=30%  Similarity=0.440  Sum_probs=75.8

Q ss_pred             CCceEECCCCEEccccEECcCcEeCCccEEccC-ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCC
Q 040779          192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANN-TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY  270 (300)
Q Consensus       192 ~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~-~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~  270 (300)
                      ..+.+||+++++..++.+.......+...-... ....++++||+++|||.+++|++|++||++++|+++|+|++|+|++
T Consensus        85 ~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~  164 (190)
T COG0110          85 GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPY  164 (190)
T ss_pred             cCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCC
Confidence            456677777777777777765444433333333 4456689999999999999999999999999999999999999999


Q ss_pred             cEEeeeceEE-EecChhh
Q 040779          271 SMVAGERAVL-RGLNLEG  287 (300)
Q Consensus       271 ~~~~G~Pa~~-~~~~~~~  287 (300)
                      ++++|+|||+ +++..+.
T Consensus       165 ~iv~G~Pa~vir~~~~~~  182 (190)
T COG0110         165 GIVAGNPARVIRKRDVVA  182 (190)
T ss_pred             eEEeCCcceEEEecchhh
Confidence            9999999994 5444443

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.69  E-value=4.5e-16  Score=129.32  Aligned_cols=102  Identities=31%  Similarity=0.465  Sum_probs=89.6

Q ss_pred             ccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCc
Q 040779          176 NNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHS  255 (300)
Q Consensus       176 ~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~  255 (300)
                      ++.++.++.|.+++.+..+++||++++++.++.|++++.||+++.++.++.+.++++||++|++|.++.+.+++.|++++
T Consensus        96 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~  175 (197)
T cd03360          96 SAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGA  175 (197)
T ss_pred             CCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCC
Confidence            33344444444444446788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCEECCCCCCCcEEeeec
Q 040779          256 FIGGGSVVSQDVPKYSMVAGER  277 (300)
Q Consensus       256 vv~~~svv~~~v~~~~~~~G~P  277 (300)
                      +++++++|.+++|+++++.|+|
T Consensus       176 ~v~~~~~v~~~~~~~~~~~g~p  197 (197)
T cd03360         176 IIGAGAVVTKDVPDGSVVVGNP  197 (197)
T ss_pred             EECCCCEEcCCCCCCCEEEecC
Confidence            9999999999999999999998

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.69  E-value=1.3e-15  Score=130.06  Aligned_cols=164  Identities=16%  Similarity=0.243  Sum_probs=99.5

Q ss_pred             CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779           68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI  147 (300)
Q Consensus        68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~  147 (300)
                      .++++.|++.|.+++.|++++.|.+. ++..++.||+++.|..++.|+++++||++|+|..++.|.+             
T Consensus        99 ~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG-------------  164 (269)
T TIGR00965        99 AGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG-------------  164 (269)
T ss_pred             CCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCC-------------
Confidence            34555555555555555555555543 4444455555555555555555555555555555544422             


Q ss_pred             EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779          148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL  227 (300)
Q Consensus       148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v  227 (300)
                               ...+                             ...+++.||++|+|++++.|.+++.||++++|+.++.+
T Consensus       165 ---------~~ep-----------------------------~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI  206 (269)
T TIGR00965       165 ---------VLEP-----------------------------LQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI  206 (269)
T ss_pred             ---------Cccc-----------------------------CCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence                     0000                             01467888888888888888888999998888888888


Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhc
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR  291 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~  291 (300)
                      ..++.|.++.   .+.++.+  .||++++|-+|+.-.++ .+++++-  +..++++......+.
T Consensus       207 ~~~~~I~~~~---~g~v~~~--~vp~~svv~~g~~p~~~-g~~~~~~--a~ivk~~d~~t~~k~  262 (269)
T TIGR00965       207 GQSTKIYDRE---TGEIHYG--RVPAGSVVVSGNLPSKD-GKYSLYC--AVIVKKVDAKTRGKV  262 (269)
T ss_pred             CCCCEEeccc---CCceeee--ecCCCcEEecCCeecCC-Cccccce--eEEEEEechhhhhhh
Confidence            8888888877   4444443  58999999888776554 2223322  223455544443333

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.68  E-value=3e-16  Score=135.30  Aligned_cols=106  Identities=23%  Similarity=0.297  Sum_probs=79.5

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.++.|+.+    .++.||+++.|++++.|.+++.+|....   ... ....+||++|+||+++.|.++++
T Consensus       142 idI~~~a~IG~g~~I~h~----~givIG~~a~IGdnv~I~~~VtiGg~~~---~~~-~~~p~IGd~V~IGaga~Ilggv~  213 (273)
T PRK11132        142 VDIHPAAKIGRGIMLDHA----TGIVIGETAVIENDVSILQSVTLGGTGK---TSG-DRHPKIREGVMIGAGAKILGNIE  213 (273)
T ss_pred             eEecCcceECCCeEEcCC----CCeEECCCCEECCCCEEcCCcEEecCcc---cCC-CcCCEECCCcEEcCCCEEcCCCE
Confidence            556666777777777542    3456666666666666666666653210   000 12479999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN  284 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~  284 (300)
                      ||++++||++|+|++|+|+++++.|+|||+.+..
T Consensus       214 IG~~a~IGAgSvV~~dVp~~~~v~G~PArvi~~~  247 (273)
T PRK11132        214 VGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKP  247 (273)
T ss_pred             ECCCCEECCCCEECcccCCCcEEEecCcEEeCcc
Confidence            9999999999999999999999999999975544

>PLN02296 carbonate dehydratase

Probab=99.67  E-value=2.7e-15  Score=129.98  Aligned_cols=76  Identities=25%  Similarity=0.303  Sum_probs=57.9

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE-ccCCEECCCCCCC
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI-GGGSVVSQDVPKY  270 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv-~~~svv~~~v~~~  270 (300)
                      ++.||+++.|+.++.+ +++.|++++.|+.++.+.++++|+++++|+++++|.++++|++++++ |..+.+.+++.+.
T Consensus       119 ~siIG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~  195 (269)
T PLN02296        119 PTIIGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEE  195 (269)
T ss_pred             CcEeCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHH
Confidence            3444555555555544 45677777777788888888999999999999999999999999985 5568888887554

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.66  E-value=1.6e-15  Score=121.56  Aligned_cols=54  Identities=30%  Similarity=0.392  Sum_probs=37.2

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceE-EEecC
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAV-LRGLN  284 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~-~~~~~  284 (300)
                      ++|+++++++.++.+.++++|++++.+++++++.++  +|+++++.|.||+ +++++
T Consensus        78 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~  134 (153)
T cd04645          78 CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELT  134 (153)
T ss_pred             eEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCC
Confidence            456666666666666666777777777777777663  6888888888887 44443

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.66  E-value=1.8e-15  Score=121.27  Aligned_cols=76  Identities=18%  Similarity=0.280  Sum_probs=59.7

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE-ccCCEECCCCCCC
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI-GGGSVVSQDVPKY  270 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv-~~~svv~~~v~~~  270 (300)
                      .+.||++++++.++.+. ++.|++++.++.++.+.++++|+++++++.++.+.++..+++++++ +..+.+.++++++
T Consensus        60 ~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~~  136 (153)
T cd04645          60 PTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDE  136 (153)
T ss_pred             CeEEcCCcEECCCcEEe-eeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCHH
Confidence            34555555555555554 3677888888888888888999999999999999999999999999 6677888888765

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.66  E-value=6.5e-15  Score=116.14  Aligned_cols=58  Identities=16%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             eEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE
Q 040779          195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI  257 (300)
Q Consensus       195 ~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv  257 (300)
                      +.||++++|+.++++.+++.|++++.+++++.+..++.|+++   |+++++.++  +++++.+
T Consensus        76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~  133 (139)
T cd03350          76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVV  133 (139)
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEE
Confidence            344445555555555666667777777777777777777777   888888874  7888433

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.66  E-value=4e-15  Score=119.55  Aligned_cols=61  Identities=16%  Similarity=0.290  Sum_probs=45.7

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCCCcE
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPKYSM  272 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~~~~  272 (300)
                      ++.||+++.++.++.+..+++|+++++|++++++.++..|++++++.+ .+.+.+++++..+
T Consensus        78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~  139 (155)
T cd04745          78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEV  139 (155)
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHH
Confidence            355556666666666667788999999999999999999999988744 5777777766543

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PLN02739 serine acetyltransferase

Probab=99.66  E-value=6.4e-16  Score=135.74  Aligned_cols=106  Identities=26%  Similarity=0.383  Sum_probs=78.9

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|...+.|+.++.|+.    +.++.||+++.|+.++.|.+++.+|....    ..-...++||++|+||++++|.++++
T Consensus       206 idI~p~A~IG~Gv~IdH----g~GVVIG~~avIGdnv~I~~gVTIGg~g~----~~g~r~p~IGd~V~IGagA~IlG~V~  277 (355)
T PLN02739        206 IDIHPAARIGKGILLDH----GTGVVIGETAVIGDRVSILHGVTLGGTGK----ETGDRHPKIGDGALLGACVTILGNIS  277 (355)
T ss_pred             cccCCCccccCceEEec----CCceEECCCCEECCCCEEcCCceeCCcCC----cCCCCCcEECCCCEEcCCCEEeCCeE
Confidence            45666666766666654    23556666666666666666665553210    00124589999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN  284 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~  284 (300)
                      ||++++||+||+|.+|+|+++++.|+|||+.+..
T Consensus       278 IGd~aiIGAGSVV~kDVP~~stvvG~PAriI~~~  311 (355)
T PLN02739        278 IGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFV  311 (355)
T ss_pred             ECCCCEECCCCEECCCCCCCcEEEecCCEEeccC
Confidence            9999999999999999999999999999965543

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.66  E-value=5.6e-15  Score=119.40  Aligned_cols=58  Identities=31%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             ECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceE-EEecChhhhhh
Q 040779          233 VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAV-LRGLNLEGLRR  290 (300)
Q Consensus       233 Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~-~~~~~~~~~~~  290 (300)
                      |+++++|+.++++.+++.|++++.++++++|..+  +|++++++|.||| +++++....+.
T Consensus        92 Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~  152 (161)
T cd03359          92 IGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQEL  152 (161)
T ss_pred             EcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHH
Confidence            3333333333333344455555555555555554  5999999999999 56666655443

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.65  E-value=6.2e-15  Score=138.36  Aligned_cols=156  Identities=21%  Similarity=0.298  Sum_probs=99.4

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG  138 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~  138 (300)
                      .+++.+.|++++.|++++.|++++.|++++.|++++.|. ++.||++|.|++++.|.+++.||++|.|++++.+..    
T Consensus       264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~----  338 (446)
T PRK14353        264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLE-GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN----  338 (446)
T ss_pred             EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEe-ccEECCCcEECCCeEEeccceecCCeEEcCceEEec----
Confidence            344455555555666666666556666666666655554 466666666666666655666666666666666543    


Q ss_pred             ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE-------Cc
Q 040779          139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-------AH  211 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-------~~  211 (300)
                       +.|++++.+++++.++                                      ++.||+++.|+.++++       .+
T Consensus       339 -~~i~~~~~i~~~~~i~--------------------------------------~~~ig~~~~Ig~~~~~~~~~~~~~~  379 (446)
T PRK14353        339 -AKLGEGAKVNHLTYIG--------------------------------------DATIGAGANIGAGTITCNYDGFNKH  379 (446)
T ss_pred             -eEECCCCEECCeeEEc--------------------------------------CcEEcCCcEECCceeeeccccccCC
Confidence             5555555555444431                                      2233333444333333       34


Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ++.||++++++.++.+..++.||+++++|++++|.++  +++++++.+.
T Consensus       380 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~~~~~g~  426 (446)
T PRK14353        380 RTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDDALALGR  426 (446)
T ss_pred             CcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCCCEEEec
Confidence            6888888888888999999999999999999999975  7777777664

>PLN02694 serine O-acetyltransferase

Probab=99.64  E-value=2.6e-15  Score=129.52  Aligned_cols=106  Identities=25%  Similarity=0.324  Sum_probs=83.3

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.++.|..    +.++.||+++.|++++.|.+++.+|..   +..+. ..+++||++|+||+++.|.++++
T Consensus       161 vdI~p~A~IG~gv~Idh----~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~-~r~piIGd~V~IGagA~Ilggi~  232 (294)
T PLN02694        161 VDIHPAAKIGKGILFDH----ATGVVIGETAVIGNNVSILHHVTLGGT---GKACG-DRHPKIGDGVLIGAGATILGNVK  232 (294)
T ss_pred             EEeCCcceecCCEEEeC----CCCeEECCCcEECCCCEEeecceeCCc---ccccC-CCccEECCCeEECCeeEECCCCE
Confidence            55666666666666654    236777777777777777777777642   11111 34689999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN  284 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~  284 (300)
                      ||++++|+++++|.+|+|++++++|+|||+.+.+
T Consensus       233 IGd~a~IGAgSVV~kdVP~~~~v~G~PAkiv~~~  266 (294)
T PLN02694        233 IGEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGK  266 (294)
T ss_pred             ECCCCEECCCCEECCcCCCCcEEEccCcEEEccC
Confidence            9999999999999999999999999999976553

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.63  E-value=2.2e-15  Score=121.24  Aligned_cols=104  Identities=25%  Similarity=0.350  Sum_probs=80.0

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|...+.|+.+.+|+.    +.++.||+.+.|++++.|.+++.||..-.-..    ...-+||+++.||+++.|+.+.+
T Consensus        68 ieIhp~A~IG~g~fIdH----g~GvVIgeta~IGddv~I~~gVTLGgtg~~~g----~RhPtIg~~V~IGagAkILG~I~  139 (194)
T COG1045          68 IEIHPGAKIGRGLFIDH----GTGVVIGETAVIGDDVTIYHGVTLGGTGKESG----KRHPTIGNGVYIGAGAKILGNIE  139 (194)
T ss_pred             eeeCCCCeECCceEEcC----CceEEEcceeEECCCeEEEcceEecCCCCcCC----CCCCccCCCeEECCCCEEEcceE
Confidence            44555555555556654    34667777777777777777777774311111    33579999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEe
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG  282 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~  282 (300)
                      ||||+.||++|+|.+|+|++++++|.|||+..
T Consensus       140 IGd~akIGA~sVVlkdVP~~~tvvGvPArii~  171 (194)
T COG1045         140 IGDNAKIGAGSVVLKDVPPNATVVGVPARVIG  171 (194)
T ss_pred             ECCCCEECCCceEccCCCCCceEecCcceEec
Confidence            99999999999999999999999999999765

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.63  E-value=1.3e-14  Score=118.00  Aligned_cols=51  Identities=22%  Similarity=0.284  Sum_probs=25.5

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEc
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH  246 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~  246 (300)
                      ++.||++++|+.++.+. ++.||+++.++.++.+. ++.|++++.+++++++.
T Consensus        82 ~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~  132 (167)
T cd00710          82 PAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVIT  132 (167)
T ss_pred             CEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEc
Confidence            34555555555555543 45555555555555553 34455555544444333

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.63  E-value=3.7e-15  Score=120.35  Aligned_cols=82  Identities=26%  Similarity=0.287  Sum_probs=62.9

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV  273 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~  273 (300)
                      ++.|++++.|+++++|.+++.++.....   . -...++||++|+||.++.+.++++|+++++|+++++|.+|+|+++++
T Consensus        81 g~~Ig~~~~IG~~~~I~~~v~ig~~~~~---~-~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~  156 (162)
T TIGR01172        81 GVVIGETAVIGDDVTIYHGVTLGGTGKE---K-GKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATV  156 (162)
T ss_pred             eEEECCCCEECCCCEEcCCCEECCCccc---c-CCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEE
Confidence            3455555555555555555555533110   0 03357999999999999999999999999999999999999999999


Q ss_pred             eeeceE
Q 040779          274 AGERAV  279 (300)
Q Consensus       274 ~G~Pa~  279 (300)
                      .|+|||
T Consensus       157 ~G~Par  162 (162)
T TIGR01172       157 VGVPAR  162 (162)
T ss_pred             EeecCC
Confidence            999996

Cysteine biosynthesis

>PRK10191 putative acyl transferase; Provisional

Probab=99.63  E-value=5.9e-15  Score=116.31  Aligned_cols=102  Identities=24%  Similarity=0.331  Sum_probs=81.8

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|...+.+++++.|..+    .++.|+.++.|++++.+.+++.||++..     ...+++.|||++++|+++.+.++++
T Consensus        42 ~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~-----~~~~~~~IGd~~~Ig~~~~I~~~v~  112 (146)
T PRK10191         42 YEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGA-----DNMACPHIGNGVELGANVIILGDIT  112 (146)
T ss_pred             cccCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCc-----CCCCCCEECCCcEEcCCCEEeCCCE
Confidence            455666666666666542    3667777777777777777777776532     2235679999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      |+++++++++++|.+|+|+++++.|.|||++
T Consensus       113 IG~~~~Igags~V~~dv~~~~~v~G~pA~~~  143 (146)
T PRK10191        113 IGNNVTVGAGSVVLDSVPDNALVVGEKARVK  143 (146)
T ss_pred             ECCCCEECCCCEECCccCCCcEEEccCcEEE
Confidence            9999999999999999999999999999864

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.62  E-value=1.4e-14  Score=116.17  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=45.1

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcE-EccCCEECCCCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSF-IGGGSVVSQDVPKY  270 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~v-v~~~svv~~~v~~~  270 (300)
                      ++.|++++.++.++.+..+++|++++++++++.+.++..++++++ .|..+.+.+++++.
T Consensus        78 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~  137 (154)
T cd04650          78 GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEE  137 (154)
T ss_pred             CcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHH
Confidence            344555555555566666788889999999999999999999999 66679988887764

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.62  E-value=1.8e-14  Score=140.84  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=73.3

Q ss_pred             CCceEECCCCEEccccEECcC-cEeCCccEEccCcee-----------cCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          192 GDRTVIGDNNLIMGSCHIAHD-CKIGNYNIFANNTLL-----------AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       192 ~~~~~IG~~~~i~~~~~i~~~-v~Ig~~~~i~~~~~v-----------~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      ..+++||+++++.......++ +.||+++.|++++.+           .++++||++|+||.+++|.++++|+|+++|++
T Consensus       595 ~lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~  674 (695)
T TIGR02353       595 LLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGP  674 (695)
T ss_pred             HCCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECC
Confidence            347888888888776555444 466666666666666           45899999999999999999999999999999


Q ss_pred             CCEECC--CCCCCcEEeeece
Q 040779          260 GSVVSQ--DVPKYSMVAGERA  278 (300)
Q Consensus       260 ~svv~~--~v~~~~~~~G~Pa  278 (300)
                      +|++.+  ++|+++.+.|+||
T Consensus       675 ~SvV~~g~~vp~~s~~~G~Pa  695 (695)
T TIGR02353       675 DSLVMKGEEVPAHTRWRGNPA  695 (695)
T ss_pred             CCEEcCCcccCCCCEEEeccC
Confidence            999999  7999999999997

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=99.60  E-value=2.2e-15  Score=122.51  Aligned_cols=85  Identities=25%  Similarity=0.344  Sum_probs=71.7

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM  272 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~  272 (300)
                      -++.||+-..++.++.+.+++.+|..   +.++--.++ .|||++|||+++.|+++++||++++|++||+|.||+|++++
T Consensus       167 tgvvigeTAvvg~~vSilH~Vtlggt---gk~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~  242 (269)
T KOG4750|consen  167 TGVVIGETAVVGDNVSILHPVTLGGT---GKGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTL  242 (269)
T ss_pred             cceeecceeEeccceeeecceeeccc---cccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCce
Confidence            46677777777777777888877743   233444556 99999999999999999999999999999999999999999


Q ss_pred             EeeeceEEE
Q 040779          273 VAGERAVLR  281 (300)
Q Consensus       273 ~~G~Pa~~~  281 (300)
                      .+|+|||..
T Consensus       243 AvGnPAklI  251 (269)
T KOG4750|consen  243 AVGNPAKLI  251 (269)
T ss_pred             ecCCchhhc
Confidence            999999943

>PLN02357 serine acetyltransferase

Probab=99.59  E-value=8.4e-15  Score=129.75  Aligned_cols=107  Identities=24%  Similarity=0.318  Sum_probs=79.0

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.++.|..    +.++.||+++.|++++.|.+++.+|....-   . -...++||++++||+++.|.++++
T Consensus       227 vdI~p~a~IG~Gv~Idh----~~giVIGe~avIGdnV~I~~gVtIGg~g~~---~-g~~~piIGd~V~IGagA~IlggV~  298 (360)
T PLN02357        227 VDIHPGAKIGQGILLDH----ATGVVIGETAVVGNNVSILHNVTLGGTGKQ---S-GDRHPKIGDGVLIGAGTCILGNIT  298 (360)
T ss_pred             eeeCCCCEECCCeEECC----CCceEECCCCEECCCCEEeCCceecCcccc---C-CccCceeCCCeEECCceEEECCeE
Confidence            45666666666666643    125566666666666666666666542110   0 123589999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL  285 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~  285 (300)
                      ||++++|+++++|.+|+|++++++|+|||+.+...
T Consensus       299 IGdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~~  333 (360)
T PLN02357        299 IGEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE  333 (360)
T ss_pred             ECCCCEECCCCEECcccCCCcEEECCCeEEEccCC
Confidence            99999999999999999999999999999766544

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=99.59  E-value=1.6e-14  Score=114.25  Aligned_cols=56  Identities=29%  Similarity=0.439  Sum_probs=52.7

Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      .....++.||++||||.++.+.++++|+++++|+++++|++|+|++++++|+|||+
T Consensus        68 ~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~  123 (145)
T cd03349          68 WPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKV  123 (145)
T ss_pred             ccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEe
Confidence            44566899999999999999999999999999999999999999999999999995

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.58  E-value=4e-14  Score=117.11  Aligned_cols=133  Identities=17%  Similarity=0.321  Sum_probs=72.0

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |+++++|++++.|.+++.||+++.|++++.|.++.               +.+.||++|.|+++++|.......+.|+++
T Consensus        11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~---------------g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~   75 (192)
T TIGR02287        11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDF---------------GRIVLKEGANIQDNCVMHGFPGQDTVVEEN   75 (192)
T ss_pred             CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccC---------------CceEECCCCEECCCeEEeccCCCCCeECCC
Confidence            55667777777776667777777777766665420               133444444444444442211112444444


Q ss_pred             eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779          146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT  225 (300)
Q Consensus       146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~  225 (300)
                      +.|++++.+                                      +++.||++++|+.++.+.+              
T Consensus        76 ~~Ig~~a~I--------------------------------------~~siIg~~~~IG~ga~I~~--------------  103 (192)
T TIGR02287        76 GHVGHGAIL--------------------------------------HGCIVGRNALVGMNAVVMD--------------  103 (192)
T ss_pred             CEECCCCEE--------------------------------------cCCEECCCCEECCCcccCC--------------
Confidence            444444433                                      2344444444444333332              


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEc-cCCEECCCCCC
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG-GGSVVSQDVPK  269 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~-~~svv~~~v~~  269 (300)
                          +++||+++.+++++.|.++..|++++++. ..+.+.+.+.+
T Consensus       104 ----g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~  144 (192)
T TIGR02287       104 ----GAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSE  144 (192)
T ss_pred             ----CeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCH
Confidence                34466667777777777778888887754 35677666544

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.58  E-value=6.4e-14  Score=113.22  Aligned_cols=58  Identities=17%  Similarity=0.326  Sum_probs=44.1

Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCCC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPKY  270 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~~  270 (300)
                      +.|++++.|+.++.+..+++|+++++++.++.+.+++.+++++++++ .+.+.+++++.
T Consensus        90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~  148 (161)
T cd03359          90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPEC  148 (161)
T ss_pred             eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchh
Confidence            44555555555566666778888888888888888899999999987 78888887653

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=99.57  E-value=2.1e-13  Score=133.39  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             CCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCC
Q 040779          192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPK  269 (300)
Q Consensus       192 ~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~  269 (300)
                      .+-++||+++++++.+.++      .. .+..+...-++++||+++++|.++++.+|++|+||+.++.+|.++.|  +|+
T Consensus       370 pdLltIG~g~~iad~v~~~------~~-~~~~g~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S~~p~~~~~~~  442 (695)
T TIGR02353       370 PDLTDIGEETFIADGLLMG------NA-RLSGGWFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVRE  442 (695)
T ss_pred             CcceEECCCcEeccCcEEe------ee-EEeCCeEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecccCCCCccCCC
Confidence            4555666655554444333      22 33446666778999999999999999999999999999999999984  899


Q ss_pred             CcEEeeeceE
Q 040779          270 YSMVAGERAV  279 (300)
Q Consensus       270 ~~~~~G~Pa~  279 (300)
                      ++.+.|+||.
T Consensus       443 g~~w~GSPa~  452 (695)
T TIGR02353       443 GVGWLGSPPF  452 (695)
T ss_pred             CCEEeCCCCe
Confidence            9999999996

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>PLN02472 uncharacterized protein

Probab=99.57  E-value=7.5e-14  Score=119.43  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=51.2

Q ss_pred             eEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779          195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK  269 (300)
Q Consensus       195 ~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~  269 (300)
                      +.||+++.|+.++.+ +++.|++++.|+.++.+..+++|++++.+++++++.++..++++.+..+ .+...+++.+
T Consensus       127 tvIG~~v~IG~~s~L-~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~  201 (246)
T PLN02472        127 TLIDRYVTIGAYSLL-RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN  201 (246)
T ss_pred             cEECCCCEECCCcEE-CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence            344444444444444 3566666666666677777888889999999999999999998888865 4666666544

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.57  E-value=4.9e-14  Score=109.33  Aligned_cols=35  Identities=11%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD  266 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~  266 (300)
                      ++.||++||||.+++|  ++.|+++++|+++++|+++
T Consensus        73 pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~  107 (147)
T cd04649          73 VISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAG  107 (147)
T ss_pred             CEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCC
Confidence            4999999999999998  6899999999999999887

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.56  E-value=1.3e-13  Score=118.98  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ  265 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~  265 (300)
                      .++.||++|+|+.++.+..++.||+++++++++.+..++.|++++   .++++.+  .||+++++-+|+.-.+
T Consensus       175 ~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g--~vp~~svvv~g~~~~~  242 (272)
T PRK11830        175 NPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYG--RVPAGSVVVPGSLPSK  242 (272)
T ss_pred             CCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEee--ecCCCcEEecCccccc
Confidence            467778888888888888888888888888888888888888873   5566653  5999999988887766

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.54  E-value=1.4e-13  Score=114.28  Aligned_cols=39  Identities=10%  Similarity=0.094  Sum_probs=24.7

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK  269 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~  269 (300)
                      ++||+++.++++++|.++..+++++++.+ .+.+.+++.+
T Consensus       107 ~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~  146 (196)
T PRK13627        107 AVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSD  146 (196)
T ss_pred             cEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCH
Confidence            44566666677777777777776655444 4777666533

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.53  E-value=8.5e-14  Score=110.92  Aligned_cols=81  Identities=20%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             hhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEcc
Q 040779           49 RLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT  128 (300)
Q Consensus        49 ~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~  128 (300)
                      ...+.+++.++|+|++.+-.++.|++++.|.+++.|+.+.   ..-.|+.++.|.|+++|+....  ..+.||++++|++
T Consensus         9 ~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~---~~I~IG~~tNIQDg~ViH~~~~--~p~~IG~~vtIGH   83 (176)
T COG0663           9 GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV---EPIRIGARTNIQDGVVIHADPG--YPVTIGDDVTIGH   83 (176)
T ss_pred             CCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC---CceEECCCceecCCeEEecCCC--CCeEECCCcEEcC
Confidence            3456788999999999888999999999999888888776   4556666666666666655433  3788888888888


Q ss_pred             CcEEcc
Q 040779          129 GAVVGD  134 (300)
Q Consensus       129 ~~~i~~  134 (300)
                      ++.|.+
T Consensus        84 ~aivHG   89 (176)
T COG0663          84 GAVVHG   89 (176)
T ss_pred             ccEEEE
Confidence            888754

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.51  E-value=3e-13  Score=100.59  Aligned_cols=99  Identities=25%  Similarity=0.332  Sum_probs=73.9

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|++++.+++++.+..    ...+.||+++.|+.++.|.+++.|+.++.+    ...++++|+++++++.++.+.++++
T Consensus         3 ~~i~~~~~ig~~~~i~~----~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~~~   74 (101)
T cd03354           3 IDIHPGAKIGPGLFIDH----GTGIVIGETAVIGDNCTIYQGVTLGGKGKG----GGKRHPTIGDNVVIGAGAKILGNIT   74 (101)
T ss_pred             eEeCCCCEECCCEEECC----CCeEEECCCCEECCCCEEcCCCEECCCccC----CcCCCCEECCCcEEcCCCEEECcCE
Confidence            34555555555555533    124556666666666655555555554433    1467789999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeec
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGER  277 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~P  277 (300)
                      |+++++++++++|.+++|++.++.|+|
T Consensus        75 Ig~~~~i~~~~~i~~~~~~~~~~~G~P  101 (101)
T cd03354          75 IGDNVKIGANAVVTKDVPANSTVVGVP  101 (101)
T ss_pred             ECCCCEECCCCEECcccCCCCEEEeCC
Confidence            999999999999999999999999998

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.49  E-value=3.2e-13  Score=101.70  Aligned_cols=104  Identities=28%  Similarity=0.344  Sum_probs=72.9

Q ss_pred             eeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC--cEeCCccEEccCceecCceEECCCcEECcCcEEccCc
Q 040779          172 DVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD--CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC  249 (300)
Q Consensus       172 ~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~--v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~  249 (300)
                      .||+++.|++++.|...    .++.||+++.|+.++.|...  ........+ ....+..+++||++++++.++.+.+++
T Consensus         3 ~Ig~~~~I~~~~~i~~~----~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~Ig~~~~ig~~~~i~~~~   77 (109)
T cd04647           3 SIGDNVYIGPGCVISAG----GGITIGDNVLIGPNVTIYDHNHDIDDPERPI-EQGVTSAPIVIGDDVWIGANVVILPGV   77 (109)
T ss_pred             EECCCcEECCCCEEecC----CceEECCCCEECCCCEEECCCCCCCcccccc-ccccccCCeEECCCCEECCCCEEcCCC
Confidence            44555555555554321    24555555555555555433  111111111 234567789999999999999999999


Q ss_pred             EECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          250 HIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       250 ~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      .|++++++++++.|.+++|+++++.|.|||.
T Consensus        78 ~ig~~~~i~~~~~v~~~i~~~~i~~g~pa~~  108 (109)
T cd04647          78 TIGDGAVVGAGSVVTKDVPPNSIVAGNPAKV  108 (109)
T ss_pred             EECCCCEECCCCEEeeECCCCCEEEccccEe
Confidence            9999999999999999999999999999984

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.47  E-value=2.7e-13  Score=114.18  Aligned_cols=47  Identities=21%  Similarity=0.341  Sum_probs=40.2

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEee
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG  275 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G  275 (300)
                      .++.|||+|+||+++.+..|+.++++|+|++|..|++|.|.+....|
T Consensus       181 ~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~~~~g  227 (271)
T COG2171         181 NPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYDRVAG  227 (271)
T ss_pred             CCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEEeecc
Confidence            47888889999999888888899999999999999888888877776

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.47  E-value=1.3e-12  Score=109.35  Aligned_cols=47  Identities=13%  Similarity=0.199  Sum_probs=29.3

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ++.||++++++.++.+..+++||+++.++++++|.++  +++++++.+.
T Consensus       108 ~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~  154 (204)
T TIGR03308       108 RVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGV  154 (204)
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEec
Confidence            3444444444555555556666777777777777764  7777777664

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.46  E-value=1.8e-12  Score=108.28  Aligned_cols=64  Identities=25%  Similarity=0.509  Sum_probs=37.9

Q ss_pred             CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      ...+++.+.+.+++.||+++.|++++.|++++.||+++.|++++.|.+++.||+++.|+.++.+
T Consensus        87 ~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  150 (201)
T TIGR03570        87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTL  150 (201)
T ss_pred             eEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence            3455566666666666667777666666666666666666655555555555555444444333

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.45  E-value=2.3e-12  Score=106.92  Aligned_cols=61  Identities=28%  Similarity=0.568  Sum_probs=33.8

Q ss_pred             CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccC
Q 040779           69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG  129 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~  129 (300)
                      ...+++.+.+.+++.|++++.|++++.|+++++||+++.|++++.|++++.||++|.|+.+
T Consensus        84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~  144 (197)
T cd03360          84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG  144 (197)
T ss_pred             ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCC
Confidence            3455555666666666666666666666666666655555555554444444444444433

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.43  E-value=4.4e-12  Score=98.50  Aligned_cols=39  Identities=18%  Similarity=0.149  Sum_probs=22.5

Q ss_pred             ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEE
Q 040779           70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLL  108 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I  108 (300)
                      ++|.|.+++.+.+.||+++.|.+++.+..++.||+++.|
T Consensus         2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iI   40 (147)
T cd04649           2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMV   40 (147)
T ss_pred             eEecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEE
Confidence            345555555555566666666666666655555555555

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.40  E-value=3.6e-12  Score=110.15  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=23.8

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD  266 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~  266 (300)
                      +.||++|+||.++.|  ++.||++|+|++|++|+.+
T Consensus       251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtag  284 (341)
T TIGR03536       251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAG  284 (341)
T ss_pred             EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCC
Confidence            677777777777776  6777777777777776654

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.39  E-value=5.9e-12  Score=96.41  Aligned_cols=48  Identities=17%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             CCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           86 QGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        86 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++.|+++++|+++++||+++.|++++.|.+++.||++|.|++++.+.
T Consensus         3 ~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~   50 (119)
T cd03358           3 DNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFT   50 (119)
T ss_pred             CCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEe
Confidence            344444444444444444444444444444445555555555554443

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.37  E-value=1.2e-11  Score=105.29  Aligned_cols=133  Identities=19%  Similarity=0.307  Sum_probs=78.5

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      ++.++.|++++.|.+.+.||+++.|++++.|.+++.||++|.|++++.|.+++.||++|+|+.++.+.+     . +   
T Consensus        83 vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~-----~-~---  153 (231)
T TIGR03532        83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG-----V-I---  153 (231)
T ss_pred             cccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc-----c-c---
Confidence            455666666666666666666666666666666666666666666666655566666666655555532     0 0   


Q ss_pred             eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779          146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT  225 (300)
Q Consensus       146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~  225 (300)
                                                        .      ...                    ..++.|+++++++.++
T Consensus       154 ----------------------------------~------~~~--------------------~~~v~IGd~v~IG~gs  173 (231)
T TIGR03532       154 ----------------------------------E------PPS--------------------AKPVVIEDNVLIGANA  173 (231)
T ss_pred             ----------------------------------c------ccc--------------------CCCeEECCCcEECCCC
Confidence                                              0      000                    1233444444444555


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCCCCC
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQDVPK  269 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~v~~  269 (300)
                      .+..++.||++++++++++|.+  .+++++++.+. +.+.+.+++
T Consensus       174 vI~~g~~Ig~~~~IgagsvV~~--di~~~~vv~G~PA~~i~~~~~  216 (231)
T TIGR03532       174 VILEGVRVGKGAVVAAGAIVTE--DVPPNTVVAGVPAKVIKQVDE  216 (231)
T ss_pred             EEcCCCEECCCCEECCCCEEcc--ccCCCcEEEecCCEEeccCCh
Confidence            5556677777777777777776  37777777653 555555544

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.37  E-value=7.2e-12  Score=107.78  Aligned_cols=57  Identities=12%  Similarity=0.203  Sum_probs=39.0

Q ss_pred             EECcCcEeCCccEEccCce----ecCc----eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC
Q 040779          208 HIAHDCKIGNYNIFANNTL----LAGH----VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD  266 (300)
Q Consensus       208 ~i~~~v~Ig~~~~i~~~~~----v~~~----v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~  266 (300)
                      .|.+++.||+++.|++++.    +.++    +.||++|+||.++.|  +..||++|+|++|++|++.
T Consensus       195 ~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkg  259 (319)
T TIGR03535       195 RISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAG  259 (319)
T ss_pred             EEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCC
Confidence            3344444444444444444    3345    888888888888888  7888888888888888776

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>PRK10502 putative acyl transferase; Provisional

Probab=99.35  E-value=2.1e-11  Score=100.47  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=30.1

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .+.||++++|+.++.+..+++||+++++++++++.+  .+++++++++.
T Consensus       124 ~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~--~v~~~~v~~G~  170 (182)
T PRK10502        124 PIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFK--SLPANTICRGN  170 (182)
T ss_pred             CEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEec--ccCCCcEEECC
Confidence            344444555555555556667777777777777775  47888777664

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.33  E-value=3.7e-11  Score=99.79  Aligned_cols=56  Identities=14%  Similarity=0.164  Sum_probs=38.5

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK  269 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~  269 (300)
                      .+.||+++.++.++.+..+++||++|+++++++|.+.  +++++++.+ .+.+.+...+
T Consensus       130 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~  186 (192)
T PRK09677        130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNH  186 (192)
T ss_pred             CeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCc
Confidence            4555555666666666677788888888888888874  777777765 4666665543

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.30  E-value=4.1e-11  Score=103.69  Aligned_cols=38  Identities=11%  Similarity=0.171  Sum_probs=27.7

Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEEC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIG  252 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~  252 (300)
                      +.||++|.++.++.+  ++.||++|+||++++|.++++|-
T Consensus       251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~  288 (341)
T TIGR03536       251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVA  288 (341)
T ss_pred             EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEE
Confidence            566666666666666  67888888888888888776663

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.27  E-value=4.4e-11  Score=99.58  Aligned_cols=55  Identities=16%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCCC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQDV  267 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~v  267 (300)
                      ..+.||++++|+.++.+..+++||++++|+++++|.++  +++++++++. +.+.+++
T Consensus       130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~  185 (203)
T PRK09527        130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREI  185 (203)
T ss_pred             CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccC
Confidence            34555555555555666677788888888888888874  7888887664 6666665

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=2.7e-11  Score=112.45  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             chhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEe
Q 040779           36 RPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF  115 (300)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~  115 (300)
                      +..+......++++|..++-+......+   .....-..+.|-      ++.+.+.+.+.++.++.||.++.|+.++.|.
T Consensus       279 ~~syd~vSkDiI~RW~YP~Vpd~~~~~~---q~~~~~r~~IYk------~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~  349 (673)
T KOG1461|consen  279 LRSYDLVSKDIIQRWTYPLVPDINFSGN---QTFSLERRNIYK------SPDVVLSHSVIVGANVVIGAGTKIGSGSKIS  349 (673)
T ss_pred             cHHHHHHHHHHHHhhcccccccccCCCC---ceeeeccccccc------CccceehhhccccceEEecccccccCCCeee
Confidence            3444455566677777666655444321   001111122333      3334444444444445555555555556666


Q ss_pred             CCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779          116 GNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       116 ~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                       |+.||.+|.||.+++|.+     +.|+++|.|+.+|.|
T Consensus       350 -NSVIG~~c~IgsN~~I~~-----S~iw~~v~Igdnc~I  382 (673)
T KOG1461|consen  350 -NSVIGANCRIGSNVRIKN-----SFIWNNVTIGDNCRI  382 (673)
T ss_pred             -cceecCCCEecCceEEee-----eeeecCcEECCCceE
Confidence             888888888888888877     777777777777777

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.25  E-value=3.2e-11  Score=91.44  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=28.2

Q ss_pred             CcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEecChhhh
Q 040779          248 FCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGLNLEGL  288 (300)
Q Consensus       248 ~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~~~~~~  288 (300)
                      +..+-|+|.|..+++++.+  +|+++.+.|+|+.+.+..++-+
T Consensus       119 rCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ct  161 (184)
T KOG3121|consen  119 RCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCT  161 (184)
T ss_pred             ceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCchhh
Confidence            3445556666666666665  5999999999999877655543

>PRK10191 putative acyl transferase; Provisional

Probab=99.24  E-value=1.7e-10  Score=91.07  Aligned_cols=78  Identities=23%  Similarity=0.380  Sum_probs=50.1

Q ss_pred             ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECCC-------cEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779           57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGSA-------AKLGDGCLLYPSSHIFGNTELGDHCILM  127 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~~-------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~  127 (300)
                      ..+|++.+.+++++.|++  ++.|++++.||+++.|++++.|+..       +.||++++|++++.+.+++.||+++.|+
T Consensus        41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig  120 (146)
T PRK10191         41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG  120 (146)
T ss_pred             CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence            445666666777777777  4566666666666666666666532       4566666666666666666666666666


Q ss_pred             cCcEEcc
Q 040779          128 TGAVVGD  134 (300)
Q Consensus       128 ~~~~i~~  134 (300)
                      .++.+..
T Consensus       121 ags~V~~  127 (146)
T PRK10191        121 AGSVVLD  127 (146)
T ss_pred             CCCEECC
Confidence            6666654

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.24  E-value=1.8e-10  Score=93.06  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=49.3

Q ss_pred             cceecCccceeCCCceECCC--cEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcE
Q 040779           56 HVYGDKYETSSSSSSFIHPT--SIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCI  125 (300)
Q Consensus        56 ~~~~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~  125 (300)
                      ....|++.++|+++++|+.+  +.|++++.||++|.|++++.|+..        ++||++++|++++.|.++++||+++.
T Consensus        60 ~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~  139 (162)
T TIGR01172        60 TGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAK  139 (162)
T ss_pred             eCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCE
Confidence            34566666677777777543  566666666666666666666632        35666666666666666666666666


Q ss_pred             EccCcEEcc
Q 040779          126 LMTGAVVGD  134 (300)
Q Consensus       126 I~~~~~i~~  134 (300)
                      |+.++++..
T Consensus       140 Iga~s~V~~  148 (162)
T TIGR01172       140 IGANSVVLK  148 (162)
T ss_pred             ECCCCEECC
Confidence            666666554

Cysteine biosynthesis

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.23  E-value=1.3e-10  Score=94.62  Aligned_cols=49  Identities=16%  Similarity=0.231  Sum_probs=36.0

Q ss_pred             CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          210 AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       210 ~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .+++.||++++|+.++.+..+++||++++||++++|.++  +++++++.+.
T Consensus       116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~  164 (169)
T cd03357         116 AKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN  164 (169)
T ss_pred             cCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEcc
Confidence            345666666666666666778888888888888888874  8888876654

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.23  E-value=1.7e-10  Score=99.38  Aligned_cols=37  Identities=14%  Similarity=0.193  Sum_probs=25.0

Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEE
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI  251 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I  251 (300)
                      +.||++|.|+.++.+  ++.||++|+||++++|.+++.+
T Consensus       226 V~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v  262 (319)
T TIGR03535       226 ISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV  262 (319)
T ss_pred             EEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence            555555555556665  5777777777777777777655

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.23  E-value=6.3e-11  Score=99.95  Aligned_cols=114  Identities=22%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             CCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccC
Q 040779           87 GVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSG  166 (300)
Q Consensus        87 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~  166 (300)
                      +++|.|++.++..+.|+++++|.+.++|.-++.++++|.|.-++.++.    ...||++++|+.++.|+.-.     +..
T Consensus       108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~----~a~VGkn~higgGa~I~GVL-----ep~  178 (271)
T COG2171         108 GVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGS----CAQVGKNSHIGGGASIGGVL-----EPL  178 (271)
T ss_pred             ceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeec----cEEECCCcccCCcceEeEEe-----cCC
Confidence            355555555555555555555555555555555555555555555543    24555555555555553211     111


Q ss_pred             CcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEE
Q 040779          167 DECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVV  233 (300)
Q Consensus       167 ~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~I  233 (300)
                      .                        ...+.||++|+|+.++.+..++.+|++|++.+++.+..++.|
T Consensus       179 ~------------------------a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki  221 (271)
T COG2171         179 Q------------------------ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI  221 (271)
T ss_pred             C------------------------CCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence            1                        345566666666666555556666655555555554444333

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.18  E-value=2.7e-10  Score=81.06  Aligned_cols=79  Identities=11%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |++++.|++++.|. ++.|++++.|++++.|. ++.+++++.|++++.|. ++.+++++.|++++.+.+     +.++++
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~-~svi~~~~~i~~~~~v~~-----~ii~~~   73 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLE-NCIIGNGAVIGEKCKLKD-----CLVGSG   73 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEe-ccEEeCCCEECCCCEEcc-----CEECCC
Confidence            56778888888886 68888888888888887 58888999999999886 888999999999988876     777777


Q ss_pred             eEEcccc
Q 040779          146 NIIGHHA  152 (300)
Q Consensus       146 ~~ig~~~  152 (300)
                      +.|++++
T Consensus        74 ~~i~~~~   80 (81)
T cd04652          74 YRVEAGT   80 (81)
T ss_pred             cEeCCCC
Confidence            7777653

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.3e-10  Score=104.01  Aligned_cols=108  Identities=21%  Similarity=0.301  Sum_probs=78.4

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCE
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCL  107 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~  107 (300)
                      .|+.+..|+.+......++......   ........+..     +.. ++|.+.+.|++++.|++++.|++++.||++|.
T Consensus       217 ~W~dig~p~d~~~a~~~~~~~~~~~---~~~~~~~~~~~-----~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~  287 (358)
T COG1208         217 YWLDIGTPEDLLEANELLLRGDGKS---PLGPIEEPVVI-----IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVT  287 (358)
T ss_pred             eEEeCCCHHHHHHHHHHHHhccccc---ccccccccccc-----ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCE
Confidence            6999999998877664333222211   11111111111     555 77778888888888888888888888889999


Q ss_pred             ECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779          108 LYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH  150 (300)
Q Consensus       108 I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~  150 (300)
                      |++++.|. ++.|.++|.|++++++.+     ++|+++|.|++
T Consensus       288 I~~~~~i~-~Sii~~~~~i~~~~~i~~-----sIi~~~~~ig~  324 (358)
T COG1208         288 IGNGVEIK-NSIIMDNVVIGHGSYIGD-----SIIGENCKIGA  324 (358)
T ss_pred             ECCCcEEE-eeEEEcCCEECCCCEEee-----eEEcCCcEECC
Confidence            99888888 899999999999999987     77777777776

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.16  E-value=4.3e-10  Score=102.43  Aligned_cols=19  Identities=5%  Similarity=-0.127  Sum_probs=12.7

Q ss_pred             hhhhhccchhhHHHHHHHH
Q 040779           29 FLLLKVRRPCLSSLSTLFL   47 (300)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~   47 (300)
                      |..+..|+.++.....++.
T Consensus       218 w~digt~~dl~~a~~~ll~  236 (353)
T TIGR01208       218 WKDTGKPEDLLDANRLILD  236 (353)
T ss_pred             EEeCCCHHHHHHHHHHHHh
Confidence            7777778877776654433

Alternate name: dTDP-D-glucose synthase

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=6.9e-11  Score=109.80  Aligned_cols=53  Identities=19%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             CCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           97 GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        97 ~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      ..+..-++++++.+.+.++.++.||.++.|+.++.|.+     ++||.+|.||.++.|
T Consensus       313 r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~N-----SVIG~~c~IgsN~~I  365 (673)
T KOG1461|consen  313 RRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISN-----SVIGANCRIGSNVRI  365 (673)
T ss_pred             ccccccCccceehhhccccceEEecccccccCCCeeec-----ceecCCCEecCceEE
Confidence            34555677777777788888888999999999999988     888888888888888

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.16  E-value=3e-10  Score=93.40  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ..+.||++++|++++.+..+++||++++|+++++|.++  ++++++++++
T Consensus       128 ~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~  175 (183)
T PRK10092        128 KPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN  175 (183)
T ss_pred             CCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEec
Confidence            34445555555555555666777777777777777764  6777777654

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=99.15  E-value=3.3e-10  Score=91.50  Aligned_cols=84  Identities=25%  Similarity=0.411  Sum_probs=71.6

Q ss_pred             CCcceecCccceeCCCceECCC--cEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCC
Q 040779           54 LPHVYGDKYETSSSSSSFIHPT--SIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDH  123 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~  123 (300)
                      +.....|||.++||++.+|+.+  ..|++.+.||++|.|..++.|++.        -+||+++.|++++.|-+++.||++
T Consensus        64 ~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~  143 (194)
T COG1045          64 FLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN  143 (194)
T ss_pred             hhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC
Confidence            4556788999999999999865  678899999999999999999852        379999999999998889999999


Q ss_pred             cEEccCcEEccCCC
Q 040779          124 CILMTGAVVGDDLP  137 (300)
Q Consensus       124 ~~I~~~~~i~~~~~  137 (300)
                      +.|+.++++..+.+
T Consensus       144 akIGA~sVVlkdVP  157 (194)
T COG1045         144 AKIGAGSVVLKDVP  157 (194)
T ss_pred             CEECCCceEccCCC
Confidence            99999999987543

>PLN02739 serine acetyltransferase

Probab=99.14  E-value=6.8e-10  Score=98.03  Aligned_cols=81  Identities=26%  Similarity=0.409  Sum_probs=69.4

Q ss_pred             ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEE
Q 040779           57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCIL  126 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I  126 (300)
                      ...|++.++||++++|+.  ++.|++++.||++|.|..++.|++        ..+||++++|++++.|.++++||+++.|
T Consensus       205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI  284 (355)
T PLN02739        205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV  284 (355)
T ss_pred             CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence            456788888999999974  788999999999999999999974        4789999999999999889999999999


Q ss_pred             ccCcEEccCCC
Q 040779          127 MTGAVVGDDLP  137 (300)
Q Consensus       127 ~~~~~i~~~~~  137 (300)
                      +.++++..+.+
T Consensus       285 GAGSVV~kDVP  295 (355)
T PLN02739        285 AAGSLVLKDVP  295 (355)
T ss_pred             CCCCEECCCCC
Confidence            99999876543

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.14  E-value=4.1e-10  Score=79.08  Aligned_cols=68  Identities=31%  Similarity=0.576  Sum_probs=49.2

Q ss_pred             eeCCCceECCCcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           65 SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        65 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      ++++++.|+++++|.+++.||+++.|++++.|...        +.|++++++++++.+.+++.||+++.|++++.+
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v   77 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV   77 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence            46777777777777777778888888877777743        667777777777777666777777777666654

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.13  E-value=5.3e-10  Score=102.88  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhcc-cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCC
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLST-ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGC  106 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~  106 (300)
                      .|..+..+..++.....++...... .+.+...+.+.+.+.+.++|++++.|. ++.|+++|.|+.  .+. ++.|+++|
T Consensus       240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~Ig~~~~I~~--~v~-~s~ig~~~  315 (380)
T PRK05293        240 YWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLVVEGCVVYG--TVE-HSVLFQGV  315 (380)
T ss_pred             EEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe-cCEECCCCEEcc--eec-ceEEcCCC
Confidence            4677777776665543222211110 011222333334445566666666663 555666666642  233 57788888


Q ss_pred             EECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEe
Q 040779          107 LLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG  155 (300)
Q Consensus       107 ~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~  155 (300)
                      .|++++.|. ++.|++++.|++++.+.+     ++|++++.|++++.+.
T Consensus       316 ~I~~~~~i~-~svi~~~~~i~~~~~i~~-----~ii~~~~~i~~~~~i~  358 (380)
T PRK05293        316 QVGEGSVVK-DSVIMPGAKIGENVVIER-----AIIGENAVIGDGVIIG  358 (380)
T ss_pred             EECCCCEEE-CCEEeCCCEECCCeEEeE-----EEECCCCEECCCCEEc
Confidence            888888887 788888888888888876     8888888888877773

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.12  E-value=9.6e-10  Score=77.98  Aligned_cols=77  Identities=19%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             CCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779           67 SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN  146 (300)
Q Consensus        67 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~  146 (300)
                      ++.+.|+++++|++++.|+++|.|++++.|. ++.+++++.|++++.|. ++.+++++.+++++.+..    ..++++++
T Consensus         3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~-~sii~~~~~v~~~~~~~~----~~~ig~~~   76 (80)
T cd05824           3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVK-SSIVGWNSTVGRWTRLEN----VTVLGDDV   76 (80)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEe-CCEEeCCCEECCCcEEec----CEEECCce
Confidence            3445555555555556666666666666665 56666777777777766 567777777777766654    24555555


Q ss_pred             EEc
Q 040779          147 IIG  149 (300)
Q Consensus       147 ~ig  149 (300)
                      .++
T Consensus        77 ~i~   79 (80)
T cd05824          77 TIK   79 (80)
T ss_pred             EEC
Confidence            544

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.11  E-value=1.3e-09  Score=80.73  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=55.0

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG  143 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig  143 (300)
                      +.+++++.|.+++.+.+.+.|++++.|++++.|.+++.||+++.|+.  .|. ++.|++++.+.++++|.+     ++||
T Consensus        12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~-~svi~~~~~i~~~~~lg~-----siIg   83 (101)
T cd05635          12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVE-DSIIEGYSNKQHDGFLGH-----SYLG   83 (101)
T ss_pred             EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EEC-ccEEcCCCEecCcCEEee-----eEEC
Confidence            44556666666666666666666666666666666666666666653  343 667777777777777765     7777


Q ss_pred             cceEEccccEE
Q 040779          144 CNNIIGHHAVV  154 (300)
Q Consensus       144 ~~~~ig~~~~i  154 (300)
                      +++.+++++..
T Consensus        84 ~~v~ig~~~~~   94 (101)
T cd05635          84 SWCNLGAGTNN   94 (101)
T ss_pred             CCCEECCCcee
Confidence            77777777655

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.10  E-value=1.3e-09  Score=77.10  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=55.0

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |++++.|++++.|.+ +.|++++.|++++.|. ++.|++++.|++++.|. ++.+++++.|++++.+..    .+.++++
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~-~svv~~~~~i~~~~~i~~----~~~ig~~   74 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIV-DSIIGDNAVIGENVRVVN----LCIIGDD   74 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEE-CCEECCCCEECCCCEEcC----CeEECCC
Confidence            456677777777765 7777888887777777 57788888888888877 677888888887777754    2555555


Q ss_pred             eEEc
Q 040779          146 NIIG  149 (300)
Q Consensus       146 ~~ig  149 (300)
                      +.++
T Consensus        75 ~~i~   78 (79)
T cd03356          75 VVVE   78 (79)
T ss_pred             eEEC
Confidence            5543

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.10  E-value=5.6e-10  Score=78.40  Aligned_cols=36  Identities=31%  Similarity=0.520  Sum_probs=32.8

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS  264 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~  264 (300)
                      .+++|+++++++.++.+.++++|+++++++++++|+
T Consensus        43 ~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~   78 (78)
T cd00208          43 NPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT   78 (78)
T ss_pred             CCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence            459999999999999999999999999999999874

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.09  E-value=2.7e-09  Score=79.09  Aligned_cols=67  Identities=24%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      .+.|++++.|++++.+.+.+.||+++.|++++.|.+++.||++|.|+.  .+..     +.|++++.+.+++.+
T Consensus        11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~-----svi~~~~~i~~~~~l   77 (101)
T cd05635          11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVED-----SIIEGYSNKQHDGFL   77 (101)
T ss_pred             CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECc-----cEEcCCCEecCcCEE
Confidence            455666666666666666666667777766666666677777777653  2322     444444444444444

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PLN02694 serine O-acetyltransferase

Probab=99.08  E-value=1.1e-09  Score=94.90  Aligned_cols=77  Identities=25%  Similarity=0.386  Sum_probs=50.7

Q ss_pred             eecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779           58 YGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCILM  127 (300)
Q Consensus        58 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~  127 (300)
                      ..|++.++||++++|+.  +++|++++.||++|.|..++.+++        +++||++++|++++.|.++++||+++.|+
T Consensus       161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IG  240 (294)
T PLN02694        161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIG  240 (294)
T ss_pred             EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEEC
Confidence            45777777777777765  566666677777777766666653        34666666666666666666666666666


Q ss_pred             cCcEEcc
Q 040779          128 TGAVVGD  134 (300)
Q Consensus       128 ~~~~i~~  134 (300)
                      .++++..
T Consensus       241 AgSVV~k  247 (294)
T PLN02694        241 AGSVVLI  247 (294)
T ss_pred             CCCEECC
Confidence            6666654

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=99.07  E-value=1e-09  Score=102.70  Aligned_cols=62  Identities=23%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             EECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          196 VIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       196 ~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      .||+++.+. ++.|+++++||+++.+....-+.++.++|++++++++.     +.|++++.+.++|++
T Consensus       375 ~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~  436 (436)
T PLN02241        375 GIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGTVI  436 (436)
T ss_pred             EECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCCCC
Confidence            566666665 67788888888888888888888888888888888874     456667777776653

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.07  E-value=3.5e-10  Score=86.53  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=17.5

Q ss_pred             CcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779          117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       117 ~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      +++|+++|.+++.+++.++ .|.++||+++.|.++++|
T Consensus        26 dvti~~gcVvHP~a~~iA~-aGPI~iGEnniiEEyA~i   62 (190)
T KOG4042|consen   26 DVTIKEGCVVHPFAVFIAT-AGPIYIGENNIIEEYAVI   62 (190)
T ss_pred             ceEecCCcEecceEEEEcc-cCCEEEccCchhhhHHHH
Confidence            4444444444444444332 334555555555555555

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.06  E-value=1.4e-09  Score=94.21  Aligned_cols=79  Identities=20%  Similarity=0.300  Sum_probs=47.8

Q ss_pred             cceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcE
Q 040779           56 HVYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCI  125 (300)
Q Consensus        56 ~~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~  125 (300)
                      ....|++.++||++++|+.  +..|++++.||++|.|..++.|++        ..+||++++|++++.|.++++||+++.
T Consensus       140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~  219 (273)
T PRK11132        140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK  219 (273)
T ss_pred             eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence            3445666666666666653  355566666666666666666653        245666666666666666666666666


Q ss_pred             EccCcEEcc
Q 040779          126 LMTGAVVGD  134 (300)
Q Consensus       126 I~~~~~i~~  134 (300)
                      |+.++++..
T Consensus       220 IGAgSvV~~  228 (273)
T PRK11132        220 IGAGSVVLQ  228 (273)
T ss_pred             ECCCCEECc
Confidence            666666654

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.06  E-value=1.8e-09  Score=76.30  Aligned_cols=64  Identities=27%  Similarity=0.414  Sum_probs=41.9

Q ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           84 IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        84 Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      |++++.|++++.|.+ +.|+++++|++++.|. ++.|++++.|++++.+.+     +.+++++.+++++.+
T Consensus         2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~-----svv~~~~~i~~~~~i   65 (79)
T cd03356           2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVD-----SIIGDNAVIGENVRV   65 (79)
T ss_pred             ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEEC-----CEECCCCEECCCCEE
Confidence            455555555566653 6666666666666666 677778888887777765     566666666665554

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.3e-09  Score=93.05  Aligned_cols=76  Identities=30%  Similarity=0.448  Sum_probs=58.2

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG  143 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig  143 (300)
                      +.|-.+++|||++++++.++||.|+.|++++.|+++++|            . +++|-++|.|..++.+.+     ++||
T Consensus       283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl------------~-~sIIl~d~ei~enavVl~-----sIig  344 (407)
T KOG1460|consen  283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRL------------R-ESIILDDAEIEENAVVLH-----SIIG  344 (407)
T ss_pred             ceEEeeeEEcCcceeCCccccCCCceecCCceecCCcee------------e-eeeeccCcEeeccceEEe-----eeec
Confidence            557788899999888888887777777666555543333            3 667778888888888887     8999


Q ss_pred             cceEEccccEEeee
Q 040779          144 CNNIIGHHAVVGVK  157 (300)
Q Consensus       144 ~~~~ig~~~~i~~~  157 (300)
                      ..+.||.++.+...
T Consensus       345 w~s~iGrWaRVe~~  358 (407)
T KOG1460|consen  345 WKSSIGRWARVEGI  358 (407)
T ss_pred             ccccccceeeeccc
Confidence            99999999988544

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.05  E-value=2.3e-09  Score=75.62  Aligned_cols=77  Identities=16%  Similarity=0.303  Sum_probs=52.6

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |++++.|++++.|. ++.|++++.|++++.|. ++.+++++.|++++.|. ++.|++++.|++++.+..    .+.++++
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~----~~~v~~~   74 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPP----GSLISFG   74 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECC----CCEEeCC
Confidence            45677777777776 57777777777777776 67777777777777776 677777777777666653    2445544


Q ss_pred             eEEc
Q 040779          146 NIIG  149 (300)
Q Consensus       146 ~~ig  149 (300)
                      +.++
T Consensus        75 ~~ig   78 (79)
T cd05787          75 VVIG   78 (79)
T ss_pred             cEeC
Confidence            4443

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.04  E-value=2e-09  Score=76.00  Aligned_cols=64  Identities=23%  Similarity=0.407  Sum_probs=37.3

Q ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           84 IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        84 Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      ||+++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.+..     +.|++++.+++++.+
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i   65 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHH-----SIVADGAVIGKGCTI   65 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeC-----cEEcCCCEECCCCEE
Confidence            45555555555555 46666666666666665 566666666666666654     455555444444433

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.04  E-value=2.7e-09  Score=75.68  Aligned_cols=57  Identities=12%  Similarity=0.205  Sum_probs=34.0

Q ss_pred             CCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           92 PFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        92 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      +++.|++++.|+++|.|++++.|. ++.+++++.|++++.+.+     +.+++++.+++++.+
T Consensus        10 ~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~-----sii~~~~~v~~~~~~   66 (80)
T cd05824          10 KTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKS-----SIVGWNSTVGRWTRL   66 (80)
T ss_pred             CCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeC-----CEEeCCCEECCCcEE
Confidence            333333334444444444445555 667777777777777766     677777776666655

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.04  E-value=2.6e-09  Score=75.98  Aligned_cols=64  Identities=20%  Similarity=0.418  Sum_probs=44.3

Q ss_pred             ECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           84 IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        84 Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      |++++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.+.+     +.+++++.+++++.+
T Consensus         2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~-----svi~~~~~i~~~~~v   65 (81)
T cd04652           2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLEN-----CIIGNGAVIGEKCKL   65 (81)
T ss_pred             ccCCCEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEec-----cEEeCCCEECCCCEE
Confidence            55666666666665 46677777777777776 577778888888777765     666666666666665

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>PLN02357 serine acetyltransferase

Probab=99.03  E-value=4e-09  Score=93.93  Aligned_cols=78  Identities=24%  Similarity=0.403  Sum_probs=60.4

Q ss_pred             eecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779           58 YGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCILM  127 (300)
Q Consensus        58 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~  127 (300)
                      ..|++.+.||++++|++  +++|++++.||++|.|..++.|++.        ++||++++|++++.|.++++||+++.|+
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG  306 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG  306 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence            46788888888888875  5778888888888888888888653        6778888888887777778888888888


Q ss_pred             cCcEEccC
Q 040779          128 TGAVVGDD  135 (300)
Q Consensus       128 ~~~~i~~~  135 (300)
                      .++++..+
T Consensus       307 AgSVV~~d  314 (360)
T PLN02357        307 AGSVVLKD  314 (360)
T ss_pred             CCCEECcc
Confidence            87777664

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.03  E-value=2.3e-09  Score=79.99  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779           70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG  149 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig  149 (300)
                      ++|++++.|. ++.||++|.|+ ++.|. ++.+++++.|++++.|. ++.|++++.|++++.+.+     +.|++++.++
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~-~siI~~~~~Ig~~~~i~~-----siig~~~~Ig   72 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVE-DSVIMPNVGIGRNAVIRR-----AIIDKNVVIP   72 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEE-EeEEcCCCEECCCCEEEe-----EEECCCCEEC
Confidence            4567777775 67788888887 78886 68888888888888887 888899999999998876     8888888888


Q ss_pred             cccEEeee
Q 040779          150 HHAVVGVK  157 (300)
Q Consensus       150 ~~~~i~~~  157 (300)
                      +++.+...
T Consensus        73 ~~~~v~~~   80 (104)
T cd04651          73 DGVVIGGD   80 (104)
T ss_pred             CCCEECCC
Confidence            88888543

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.02  E-value=3.7e-09  Score=79.34  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=26.9

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      .+.||++++++.++.+..+++||+++++++++.+.+.  +++++++.+
T Consensus        56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G  101 (107)
T cd05825          56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAG  101 (107)
T ss_pred             CEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc--CCCCCEEEC
Confidence            4444555555555555566666666666667666653  556655544

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.98  E-value=7.1e-09  Score=76.93  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CcEECCCcEEccCcEEccCCCCceeeccceEEccccEEe
Q 040779          117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG  155 (300)
Q Consensus       117 ~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~  155 (300)
                      .+.||+++.|+.++.+..    .++|++++.+++++.+.
T Consensus        54 ~~~Ig~~~~Ig~~~~i~~----~~~Ig~~~~i~~~~~i~   88 (101)
T cd03354          54 HPTIGDNVVIGAGAKILG----NITIGDNVKIGANAVVT   88 (101)
T ss_pred             CCEECCCcEEcCCCEEEC----cCEECCCCEECCCCEEC
Confidence            556666666666666654    35666666666666664

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=5.5e-09  Score=95.03  Aligned_cols=59  Identities=20%  Similarity=0.321  Sum_probs=46.7

Q ss_pred             ECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           90 VGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        90 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      ++. +.|.+.+.|++++.|++++.|++++.||++|.|++++.|.+     ++|.+++.+++++.+
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~-----Sii~~~~~i~~~~~i  311 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN-----SIIMDNVVIGHGSYI  311 (358)
T ss_pred             ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEe-----eEEEcCCEECCCCEE
Confidence            444 66666777777777777777777888888888888888887     888888888888887

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.96  E-value=8.2e-09  Score=77.48  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=16.7

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEc
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG  258 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~  258 (300)
                      ++.+..+++|+++++++.++.+.+  .++++++++
T Consensus        70 ~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~  102 (109)
T cd04647          70 NVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA  102 (109)
T ss_pred             CCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence            333334455555555555555552  455555543

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.90  E-value=8.6e-09  Score=94.85  Aligned_cols=98  Identities=19%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             CCcceecCccceeCCCceECCCcEEcC---CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHP---NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA  130 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~  130 (300)
                      +..++.|++.+.+ .++.|+++|.|..   ++.|+++|.|+++|.|. ++.|++++.|++++.|. +++|++++.|++++
T Consensus       279 ~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-~svi~~~~~i~~~~~i~-~~ii~~~~~i~~~~  355 (380)
T PRK05293        279 NLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-DSVIMPGAKIGENVVIE-RAIIGENAVIGDGV  355 (380)
T ss_pred             CCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-CCEEeCCCEECCCeEEe-EEEECCCCEECCCC
Confidence            4556677777777 4667777777753   46788888888888886 67888888888888887 68888888888888


Q ss_pred             EEccCCCCceeeccceEEccccEE
Q 040779          131 VVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       131 ~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      .+.+......+||+++.+.+.+.|
T Consensus       356 ~i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        356 IIGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             EEcCCCceeEEEeCCCCCCCCcEe
Confidence            887633223556666666665544

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=98.87  E-value=1.9e-08  Score=75.02  Aligned_cols=58  Identities=26%  Similarity=0.362  Sum_probs=35.1

Q ss_pred             EECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           89 SVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        89 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      +|++++.|. ++.||++|.|+ ++.|. ++.+++++.|++++.|..     +.|++++.++.++.+
T Consensus         3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~-----siI~~~~~Ig~~~~i   60 (104)
T cd04651           3 YIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVED-----SVIMPNVGIGRNAVI   60 (104)
T ss_pred             eecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEE-----eEEcCCCEECCCCEE
Confidence            444555553 45566666665 56665 666777777777777665     566666666655555

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=98.87  E-value=2.1e-08  Score=91.39  Aligned_cols=53  Identities=21%  Similarity=0.423  Sum_probs=24.7

Q ss_pred             CCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779           73 HPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM  127 (300)
Q Consensus        73 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~  127 (300)
                      .+.+.+.+.+.|++++.| +++.|.+++.||++|.|+ ++.|.++++||++|.|+
T Consensus       246 ~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~  298 (353)
T TIGR01208       246 DDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR  298 (353)
T ss_pred             CCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe
Confidence            344444444555555555 444444445555555543 23333344444444443

Alternate name: dTDP-D-glucose synthase

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.83  E-value=2.1e-08  Score=93.16  Aligned_cols=70  Identities=19%  Similarity=0.288  Sum_probs=60.2

Q ss_pred             cCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEee
Q 040779           79 HPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV  156 (300)
Q Consensus        79 ~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~  156 (300)
                      .+++.|+++|.|+ ++.|. ++.|+++|.|++++.|. +++|+++|.|++++.|.+     ++|++++.|++++.++.
T Consensus       313 ~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~-----~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        313 AQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRR-----AILDKNVVVPPGATIGV  382 (407)
T ss_pred             EEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEe-----eEECCCCEECCCCEECC
Confidence            3467788888887 78887 58899999999999998 788999999999999987     99999999999998864

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.82  E-value=9.8e-09  Score=78.70  Aligned_cols=137  Identities=18%  Similarity=0.251  Sum_probs=82.8

Q ss_pred             CEECCCCEECCCCEECCCcEECCCCEECCCcEEe---CCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeee
Q 040779           82 AIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF---GNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKC  158 (300)
Q Consensus        82 ~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~---~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~  158 (300)
                      +.|...+.+.-.+.|.++++|+++|++++.+++.   +.+.||+++.|.+.++|.+.++            ++.+.    
T Consensus         9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~------------~~~~~----   72 (190)
T KOG4042|consen    9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLE------------PGAVW----   72 (190)
T ss_pred             eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcC------------CCCcc----
Confidence            4555666666667777788888888888887764   4889999999999999987332            22222    


Q ss_pred             cCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcE
Q 040779          159 QDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTH  238 (300)
Q Consensus       159 ~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~  238 (300)
                            ..++.++.||.+..+.-+|..       ...++||+..|.+.+.+++++.+.++|                  .
T Consensus        73 ------d~~~~pmiIGt~NvFeVgc~s-------~A~kvGd~NVieskayvg~gv~vssgC------------------~  121 (190)
T KOG4042|consen   73 ------DSDGQPMIIGTWNVFEVGCKS-------SAKKVGDRNVIESKAYVGDGVSVSSGC------------------S  121 (190)
T ss_pred             ------CCCCCeEEEeccceEEeechh-------hhhhhcCcceEeeeeEecCCcEEcCCc------------------e
Confidence                  112234666666665544443       234556665555555555544444444                  4


Q ss_pred             ECcCcEEccCcEECCCcEEccCCEECC
Q 040779          239 TAGAIVIHQFCHIGSHSFIGGGSVVSQ  265 (300)
Q Consensus       239 ig~~~~v~~~~~I~~~~vv~~~svv~~  265 (300)
                      +|+.+.+...-.++++++|.+-.-+..
T Consensus       122 vGA~c~v~~~q~lpent~vYga~~L~R  148 (190)
T KOG4042|consen  122 VGAKCTVFSHQNLPENTSVYGATNLSR  148 (190)
T ss_pred             eccceEEecccccCCcceEEccccccc
Confidence            444444444456677777766555544

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.74  E-value=5.7e-08  Score=88.77  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=74.5

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhcc-cCCcceec-CccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCC
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLST-ALPHVYGD-KYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDG  105 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~  105 (300)
                      .|..+..+..++.....++.+.... .......+ ..+..+.+.++|++.+.+. ++.||++|.|+++ .+. ++.|+++
T Consensus       240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~I~~~-~v~-~s~i~~~  316 (361)
T TIGR02091       240 YWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVV-DSLVSEGCIISGA-TVS-HSVLGIR  316 (361)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEE-CCEECCCCEECCC-EEE-ccEECCC
Confidence            4777777777666554333221110 01111111 1122344556666666553 5667777777664 554 6888888


Q ss_pred             CEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779          106 CLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       106 ~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      |.|+++|.|. ++.|++++.|++++.+.+     +++|+++.|++++.+
T Consensus       317 ~~I~~~~~i~-~sii~~~~~v~~~~~l~~-----~ivg~~~~i~~~~~i  359 (361)
T TIGR02091       317 VRIGSGSTVE-DSVIMGDVGIGRGAVIRN-----AIIDKNVRIGEGVVI  359 (361)
T ss_pred             CEECCCCEEe-eeEEeCCCEECCCCEEee-----eEECCCCEECCCCEe
Confidence            8888888887 788888888888888875     888888888887766

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.73  E-value=2e-08  Score=87.06  Aligned_cols=105  Identities=18%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             hhhhhccchhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEE
Q 040779           29 FLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLL  108 (300)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I  108 (300)
                      |++...|+.++..+. ++++..  +...++..-|.+.+..++.+++.+.++      ++|.|++++.|+.+++|++++.|
T Consensus       227 WmDIGqpkdf~~g~~-~Yl~s~--~~~t~~r~~p~~~i~~nvlvd~~~~iG------~~C~Ig~~vvIG~r~~i~~gV~l  297 (371)
T KOG1322|consen  227 WMDIGQPKDFLTGFS-FYLRSL--PKYTSPRLLPGSKIVGNVLVDSIASIG------ENCSIGPNVVIGPRVRIEDGVRL  297 (371)
T ss_pred             hhhcCCHHHHHHHHH-HHHhhC--cccCCccccCCccccccEeeccccccC------CccEECCCceECCCcEecCceEE
Confidence            899999999988743 333322  333333333334444555555554444      44444444433333333333333


Q ss_pred             CCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779          109 YPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       109 ~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                            . ++.|..+..++..+.+..     +..|.++.||.++.+
T Consensus       298 ------~-~s~il~~~~~~~~s~i~s-----~ivg~~~~IG~~~~i  331 (371)
T KOG1322|consen  298 ------Q-DSTILGADYYETHSEISS-----SIVGWNVPIGIWARI  331 (371)
T ss_pred             ------E-eeEEEccceechhHHHHh-----hhccccccccCceEE
Confidence                  3 445555566666666655     677777777777655

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.73  E-value=1.3e-07  Score=74.90  Aligned_cols=48  Identities=21%  Similarity=0.269  Sum_probs=33.5

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .++.||++++++.++.+..+++||++++||++++|.++  +++++++++.
T Consensus        72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~  119 (145)
T cd03349          72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGN  119 (145)
T ss_pred             CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEec
Confidence            35555566666666666667778888888888888874  6788777654

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=4.9e-08  Score=83.55  Aligned_cols=75  Identities=21%  Similarity=0.223  Sum_probs=69.4

Q ss_pred             eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779           58 YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus        58 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      +.|-.++.|.+.+.++|+|+|+||++||.+++||+++.|. ++.|-+++.|.+++.+- +++||-++.||..+.+..
T Consensus       283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~-~sIIl~d~ei~enavVl-~sIigw~s~iGrWaRVe~  357 (407)
T KOG1460|consen  283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-ESIILDDAEIEENAVVL-HSIIGWKSSIGRWARVEG  357 (407)
T ss_pred             ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceee-eeeeccCcEeeccceEE-eeeecccccccceeeecc
Confidence            5677888899999999999999999999999999999999 79999999999999998 899999999999998865

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.72  E-value=6.6e-08  Score=90.34  Aligned_cols=15  Identities=0%  Similarity=-0.170  Sum_probs=8.9

Q ss_pred             hhhhhccchhhHHHH
Q 040779           29 FLLLKVRRPCLSSLS   43 (300)
Q Consensus        29 ~~~~~~~~~~~~~~~   43 (300)
                      |..+..++.++....
T Consensus       256 w~digt~~~y~~an~  270 (429)
T PRK02862        256 WEDIGTIEAFYEANL  270 (429)
T ss_pred             EEeCCCHHHHHHHHH
Confidence            566666666665543

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.71  E-value=1.6e-07  Score=77.84  Aligned_cols=52  Identities=12%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQ  265 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~  265 (300)
                      .+.||++++|+.++++..+++||+++++|+++++.+  .+++++++++. +.+.+
T Consensus       124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk--dvp~~~iv~G~Pa~vir  176 (190)
T COG0110         124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK--DVPPYGIVAGNPARVIR  176 (190)
T ss_pred             CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC--ccCCCeEEeCCcceEEE
Confidence            455555555566666666777888888888888887  58888888774 54543

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.64  E-value=1.1e-07  Score=87.10  Aligned_cols=117  Identities=10%  Similarity=0.114  Sum_probs=67.0

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhccc-C-CcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCC
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLSTA-L-PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDG  105 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~  105 (300)
                      .|+.+..|..+......++....... . .....+.....+.+.++|++++.| +++.||++|.|+  ..|. ++.|+++
T Consensus       235 ~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~-~s~i~~~  310 (369)
T TIGR02092       235 YLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVE-NSILSRG  310 (369)
T ss_pred             ceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEe-CCEECCC
Confidence            36777777777665543332211110 0 001011111122355566666666 356666666664  2344 5677777


Q ss_pred             CEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779          106 CLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       106 ~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      |.|+++|.|. ++.|++++.|++++.+.+     ++|++++.+++++.+
T Consensus       311 ~~I~~~~~i~-~sii~~~~~I~~~~~i~~-----~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       311 VHVGKDALIK-NCIIMQRTVIGEGAHLEN-----VIIDKDVVIEPNVKI  353 (369)
T ss_pred             CEECCCCEEE-eeEEeCCCEECCCCEEEE-----EEECCCCEECCCCEe
Confidence            7777777776 777777777777777766     777777777777666

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.62  E-value=9.3e-07  Score=73.01  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=55.8

Q ss_pred             cceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779           63 ETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus        63 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      .++...++.|++++++. .-.+++....++++.|.+ ..+..+++|+.+|.+.+|+..+.++.|+..+.|..
T Consensus        16 ~ivv~gdViIG~nS~l~-~~V~g~~iivge~v~i~G-diva~diridmw~kv~gNV~ve~dayiGE~~sI~g   85 (277)
T COG4801          16 IIVVKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYG-DIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG   85 (277)
T ss_pred             eEEEeccEEEcccceee-eeeeeeeEEeccCcEEee-eEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence            34566888889998887 447888888889998885 44558889999998888888888888888888765

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.62  E-value=2.4e-07  Score=86.48  Aligned_cols=69  Identities=13%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeee
Q 040779           81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVK  157 (300)
Q Consensus        81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~  157 (300)
                      ++.|+++|.| +++.|. ++.|+++|.|++++.|. ++.|+++|.|++++.|.+     ++|++++.+++++.++..
T Consensus       327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~~-----~ii~~~~~i~~~~~i~~~  395 (425)
T PRK00725        327 NSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLRR-----CVIDRGCVIPEGMVIGED  395 (425)
T ss_pred             eCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEee-----EEECCCCEECCCCEECCC
Confidence            6788888888 688887 68899999999999997 888999999999999976     899999999988888543

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.60  E-value=3.1e-07  Score=86.08  Aligned_cols=16  Identities=0%  Similarity=-0.149  Sum_probs=10.5

Q ss_pred             hhhhhhccchhhHHHH
Q 040779           28 SFLLLKVRRPCLSSLS   43 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~   43 (300)
                      .|..+..|+.++....
T Consensus       263 yw~dIg~~~~y~~a~~  278 (436)
T PLN02241        263 YWEDIGTIKSFYEANL  278 (436)
T ss_pred             EEEECCCHHHHHHHHH
Confidence            4677777777666554

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.50  E-value=6.5e-07  Score=83.68  Aligned_cols=33  Identities=21%  Similarity=0.557  Sum_probs=17.4

Q ss_pred             cEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779          100 AKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus       100 ~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      +.||++|.| +++.|. ++.||++|.|++++.|.+
T Consensus       309 ~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~  341 (429)
T PRK02862        309 SIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIED  341 (429)
T ss_pred             CEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEe
Confidence            444455544 444454 455556666655555544

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.49  E-value=8.1e-07  Score=79.69  Aligned_cols=89  Identities=20%  Similarity=0.196  Sum_probs=73.3

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG  138 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~  138 (300)
                      -|.+..+..+.+++..++.+. ++.|+++|+|..  .|. ++.|+.+++|+.+|.|. ++.|..+|.|+.+|.|..    
T Consensus       275 ~IyT~~~~~pPak~~~~s~v~-nSLv~~GciI~G--~V~-nSVL~~~v~I~~gs~i~-~svim~~~~IG~~~~l~~----  345 (393)
T COG0448         275 PIYTKNKNLPPAKFVNDSEVS-NSLVAGGCIISG--TVE-NSVLFRGVRIGKGSVIE-NSVIMPDVEIGEGAVLRR----  345 (393)
T ss_pred             ceeecCCCCCCceEecCceEe-eeeeeCCeEEEe--EEE-eeEEecCeEECCCCEEE-eeEEeCCcEECCCCEEEE----
Confidence            355555566677777777765 778888998865  666 78999999999999998 899999999999999997    


Q ss_pred             ceeeccceEEccccEEeee
Q 040779          139 QTVFGCNNIIGHHAVVGVK  157 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~  157 (300)
                       ++|.++|.|++++.|+..
T Consensus       346 -aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         346 -AIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             -EEeCCCcEeCCCcEEcCC
Confidence             999999999999999654

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.49  E-value=3.6e-07  Score=69.65  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=46.7

Q ss_pred             eeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCcc
Q 040779          140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYN  219 (300)
Q Consensus       140 ~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~  219 (300)
                      .++|..|.++.++.|+++...|+ +.....++.||+++++++.+++++                   ++|+.-+++|.++
T Consensus        55 Vr~GryCV~ksrsvIRPp~K~FS-Kg~affp~hiGdhVFieE~cVVnA-------------------AqIgsyVh~Gkna  114 (184)
T KOG3121|consen   55 VRIGRYCVLKSRSVIRPPMKIFS-KGPAFFPVHIGDHVFIEEECVVNA-------------------AQIGSYVHLGKNA  114 (184)
T ss_pred             ceEcceEEeccccccCCchHHhc-CCceeeeeeecceEEEecceEeeh-------------------hhheeeeEeccce
Confidence            44444444444444443332222 233344577777777777777743                   2333344444444


Q ss_pred             EEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          220 IFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       220 ~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +|+.++++++.++|-|+++      +.+.+.+++++.++++
T Consensus       115 viGrrCVlkdCc~ild~tV------lPpet~vppy~~~~g~  149 (184)
T KOG3121|consen  115 VIGRRCVLKDCCRILDDTV------LPPETLVPPYSTIGGN  149 (184)
T ss_pred             eEcCceEhhhheeccCCcc------cCcccccCCceEEcCC
Confidence            4444444444444444443      4444455555555554

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=4.7e-07  Score=80.24  Aligned_cols=50  Identities=18%  Similarity=0.329  Sum_probs=21.7

Q ss_pred             CcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           99 AAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        99 ~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      ++.+++++.|++++.|. .++||++|.|++.+.+.+     +.|.+++++|+++.|
T Consensus       334 d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~n-----Silm~nV~vg~G~~I  383 (433)
T KOG1462|consen  334 DSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVAN-----SILMDNVVVGDGVNI  383 (433)
T ss_pred             hhccCCCceecccceee-eeeecCCccccCCcEEEe-----eEeecCcEecCCcce
Confidence            33333333333333333 444444444444444443     444444444444444

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=5.1e-07  Score=80.00  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=17.6

Q ss_pred             CcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779          117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus       117 ~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      .+.++++|.|++++.|..     ++||.+|.||+.+.+
T Consensus       334 d~iv~~~t~i~~~s~ik~-----SviG~nC~Ig~~~~v  366 (433)
T KOG1462|consen  334 DSIVGDNTQIGENSNIKR-----SVIGSNCDIGERVKV  366 (433)
T ss_pred             hhccCCCceecccceeee-----eeecCCccccCCcEE
Confidence            444555555555555544     555555555555554

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.41  E-value=7.5e-07  Score=73.25  Aligned_cols=77  Identities=23%  Similarity=0.419  Sum_probs=48.5

Q ss_pred             ecCccceeCCCceECCC--cEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEEcc
Q 040779           59 GDKYETSSSSSSFIHPT--SIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCILMT  128 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~  128 (300)
                      .|||-++||++..++..  ..|++.+.||+++.|..++.+++        .-.||+|+.|+.++.|-+++.||+++.|+.
T Consensus       150 dihpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaA  229 (269)
T KOG4750|consen  150 DIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAA  229 (269)
T ss_pred             cccchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEec
Confidence            45566666666666433  45555666666666665555542        124777777777777777777777777777


Q ss_pred             CcEEccC
Q 040779          129 GAVVGDD  135 (300)
Q Consensus       129 ~~~i~~~  135 (300)
                      ++++..|
T Consensus       230 GsvV~kD  236 (269)
T KOG4750|consen  230 GSVVLKD  236 (269)
T ss_pred             cceEEec
Confidence            7777654

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=98.41  E-value=1.5e-06  Score=79.47  Aligned_cols=77  Identities=17%  Similarity=0.227  Sum_probs=48.6

Q ss_pred             CCcceecCccceeCCCceECCCcEEcC----CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccC
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHP----NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG  129 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~  129 (300)
                      +++.+++++.+++ +++.|+++|.|++    ++.|+++|.|+++|+|. ++.|++++.|++++.|. +++||+++.|+++
T Consensus       280 ~~~~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~-~sii~~~~~v~~~~~l~-~~ivg~~~~i~~~  356 (361)
T TIGR02091       280 LPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVE-DSVIMGDVGIGRGAVIR-NAIIDKNVRIGEG  356 (361)
T ss_pred             CCCceEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEe-eeEEeCCCEECCCCEEe-eeEECCCCEECCC
Confidence            3455566665543 4455666666665    66666666666666665 56667777777776665 6666666666666


Q ss_pred             cEEc
Q 040779          130 AVVG  133 (300)
Q Consensus       130 ~~i~  133 (300)
                      +.|.
T Consensus       357 ~~i~  360 (361)
T TIGR02091       357 VVIG  360 (361)
T ss_pred             CEeC
Confidence            6553

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.38  E-value=1.5e-06  Score=80.73  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=50.3

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      +.|++++.|+ ++.|. ++.|+++|.|++++.|. ++.|++++.|++++.|. +++|++++.|++++.+..
T Consensus       316 ~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        316 SLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV  382 (407)
T ss_pred             CEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence            4455555555 55554 47788888888888887 67788888888888887 788888888888887765

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=98.30  E-value=9.5e-07  Score=51.39  Aligned_cols=34  Identities=26%  Similarity=0.366  Sum_probs=23.5

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECC
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ  265 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~  265 (300)
                      ++.||++|+|+.++.+  +++|+|+++++++++|++
T Consensus         1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~   34 (34)
T PF14602_consen    1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA   34 (34)
T ss_dssp             TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred             CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence            4678888888888887  588899999988888764

...

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=2e-06  Score=77.22  Aligned_cols=78  Identities=15%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CcceecCccceeCCCceECCCcEEc---CCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcE
Q 040779           55 PHVYGDKYETSSSSSSFIHPTSIVH---PNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV  131 (300)
Q Consensus        55 ~~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~  131 (300)
                      .+++.+..++++ .++.|..+|.|.   .++.|+.+++|+.++.|. ++.|-.++.|+++|.|. +++|.++|.|+++..
T Consensus       283 ~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~-~svim~~~~IG~~~~l~-~aIIDk~v~I~~g~~  359 (393)
T COG0448         283 LPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE-NSVIMPDVEIGEGAVLR-RAIIDKNVVIGEGVV  359 (393)
T ss_pred             CCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE-eeEEeCCcEECCCCEEE-EEEeCCCcEeCCCcE
Confidence            444554444432 566677777776   356799999999999998 78888899999999999 999999999999999


Q ss_pred             EccC
Q 040779          132 VGDD  135 (300)
Q Consensus       132 i~~~  135 (300)
                      |..+
T Consensus       360 i~~~  363 (393)
T COG0448         360 IGGD  363 (393)
T ss_pred             EcCC
Confidence            9874

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.18  E-value=6.4e-06  Score=75.52  Aligned_cols=76  Identities=14%  Similarity=0.197  Sum_probs=44.7

Q ss_pred             cceecCccceeCCCceECCCcEEc---CCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           56 HVYGDKYETSSSSSSFIHPTSIVH---PNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        56 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      +++.|++.+.+ +++.|+++|.|+   .++.|+++|.|+++|.|. ++.+++++.|++++.+. ++.||+++.|++++.+
T Consensus       277 ~p~~i~~~~~i-~~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~-~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       277 PPTYYAENSKV-ENSLVANGCIIEGKVENSILSRGVHVGKDALIK-NCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKI  353 (369)
T ss_pred             CCcEEcCCCEE-EEeEEcCCCEEeeEEeCCEECCCCEECCCCEEE-eeEEeCCCEECCCCEEE-EEEECCCCEECCCCEe
Confidence            44555555555 455555665554   234566666666666664 56666666666666665 5666666666666666


Q ss_pred             cc
Q 040779          133 GD  134 (300)
Q Consensus       133 ~~  134 (300)
                      .+
T Consensus       354 ~~  355 (369)
T TIGR02092       354 AG  355 (369)
T ss_pred             CC
Confidence            44

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.09  E-value=4.7e-06  Score=72.67  Aligned_cols=97  Identities=18%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             hcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccC
Q 040779           50 LSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG  129 (300)
Q Consensus        50 ~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~  129 (300)
                      -++++.+++.+...+.+.+-..++.+|.|++++.||.++.|+.++.|. ++++-.+..+..++.|. .+.+|-++.||.+
T Consensus       251 t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~-~s~il~~~~~~~~s~i~-s~ivg~~~~IG~~  328 (371)
T KOG1322|consen  251 TSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQ-DSTILGADYYETHSEIS-SSIVGWNVPIGIW  328 (371)
T ss_pred             CCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEE-eeEEEccceechhHHHH-hhhccccccccCc
Confidence            344455555666666666666666777777777777777777777777 45555566677666665 5566666666666


Q ss_pred             cEEccCCCCceeeccceEEcccc
Q 040779          130 AVVGDDLPGQTVFGCNNIIGHHA  152 (300)
Q Consensus       130 ~~i~~~~~~~~~Ig~~~~ig~~~  152 (300)
                      +.|..    .++||+|+.|...-
T Consensus       329 ~~id~----~a~lG~nV~V~d~~  347 (371)
T KOG1322|consen  329 ARIDK----NAVLGKNVIVADED  347 (371)
T ss_pred             eEEec----ccEeccceEEeccc
Confidence            65543    24555555544433

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.02  E-value=2.1e-05  Score=73.57  Aligned_cols=65  Identities=18%  Similarity=0.302  Sum_probs=38.5

Q ss_pred             eeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           65 SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        65 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      .|++++.| +++.|. ++.|+++|.|+++|.|. ++.|++++.|++++.|. ++.|+++|.|++++.|.
T Consensus       329 ~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~-~~ii~~~~~i~~~~~i~  393 (425)
T PRK00725        329 LVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLR-RCVIDRGCVIPEGMVIG  393 (425)
T ss_pred             EEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEe-eEEECCCCEECCCCEEC
Confidence            34444444 344444 45566666666666664 56666666777666665 56666666666665554

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=98.01  E-value=0.00037  Score=57.95  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=58.0

Q ss_pred             eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCC
Q 040779           58 YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLP  137 (300)
Q Consensus        58 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~  137 (300)
                      ......+.||.++.+..+ .+++.+..|+++.|... .+..++.|+..|.+..++....+..||++++|....++.++  
T Consensus        17 ivv~gdViIG~nS~l~~~-V~g~~iivge~v~i~Gd-iva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gd--   92 (277)
T COG4801          17 IVVKGDVIIGKNSMLKYG-VVGEEIIVGERVRIYGD-IVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGD--   92 (277)
T ss_pred             EEEeccEEEcccceeeee-eeeeeEEeccCcEEeee-EEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecc--
Confidence            455667777777777665 44556777777777543 33357777777777777777777777777777777776653  


Q ss_pred             CceeeccceEEcc
Q 040779          138 GQTVFGCNNIIGH  150 (300)
Q Consensus       138 ~~~~Ig~~~~ig~  150 (300)
                        ..+|+++.|..
T Consensus        93 --Ldig~dV~Ieg  103 (277)
T COG4801          93 --LDIGADVIIEG  103 (277)
T ss_pred             --cccccceEEec
Confidence              55666665544

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.94  E-value=7.9e-06  Score=48.22  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=17.5

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      ++||++++|++++.+.+++.|+++++|+++++|
T Consensus         2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            445555555555555555555555555555554

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.90  E-value=1.3e-05  Score=47.31  Aligned_cols=30  Identities=33%  Similarity=0.744  Sum_probs=11.5

Q ss_pred             ECCCCEECCCcEEeCCcEECCCcEEccCcE
Q 040779          102 LGDGCLLYPSSHIFGNTELGDHCILMTGAV  131 (300)
Q Consensus       102 Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~  131 (300)
                      ||++++|++++.|.+++.||++|.|++++.
T Consensus         4 Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~   33 (36)
T PF00132_consen    4 IGDNVIIGPNAVIGGGVVIGDNCVIGPGVV   33 (36)
T ss_dssp             EETTEEEETTEEEETTEEE-TTEEEETTEE
T ss_pred             EcCCCEECCCcEecCCCEECCCCEEcCCCE
Confidence            333333333333333444444444444433

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.81  E-value=3.6e-05  Score=44.73  Aligned_cols=15  Identities=33%  Similarity=0.647  Sum_probs=5.4

Q ss_pred             cEECCCcEEccCcEE
Q 040779          118 TELGDHCILMTGAVV  132 (300)
Q Consensus       118 ~~IG~~~~I~~~~~i  132 (300)
                      ++||++|.|+++++|
T Consensus        18 i~igd~~~i~~g~~I   32 (34)
T PF14602_consen   18 ITIGDGVIIGAGVVI   32 (34)
T ss_dssp             SEE-TTEEE-TTEEE
T ss_pred             CEEcCCCEECCCCEE
Confidence            344444444444433

...

>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F

Probab=97.65  E-value=1.7e-05  Score=56.25  Aligned_cols=33  Identities=61%  Similarity=0.965  Sum_probs=28.3

Q ss_pred             CCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          266 DVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       266 ~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      ||||++++.|+||+++++|..+|++.||+.++.
T Consensus         1 DVpPf~~~~G~~a~~~GlN~vGLrR~Gfs~~~i   33 (83)
T PF13720_consen    1 DVPPFMLVAGNPARIRGLNLVGLRRRGFSKEEI   33 (83)
T ss_dssp             BB-TTEEEETTTTEEEEE-HHHHHHTTS-HHHH
T ss_pred             CCCCeEEecCCccEEeeeeHHHHHHcCCCHHHH
Confidence            799999999999999999999999999998764

...

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=86.96  E-value=2  Score=40.13  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=17.9

Q ss_pred             CcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779           99 AAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus        99 ~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      ++.+..++.+++++.|. ++.++.+..|+++++|.+
T Consensus       284 nSil~~~~~vg~~svIe-~s~l~~~~~IG~~cIisG  318 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIISG  318 (414)
T ss_pred             EeEecCCceECCCCEEE-eeecCCCCEECCCCEEEC
Confidence            34444444555555544 555555555555555544

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	300
3t57_A	305	Activity And Crystal Structure Of Arabidopsis Udp-N		3e-91
4e6u_A	265	Structure Of Lpxa From Acinetobacter Baumannii At 1		6e-33
4e6t_A	294	Structure Of Lpxa From Acinetobacter Baumannii At 1		7e-33
2jf2_A	264	Nucleotide Substrate Binding By Udp-n-acetylglucosa		8e-31
2aq9_A	262	Structure Of E. Coli Lpxa With A Bound Peptide That		9e-31
4eqy_A	283	Crystal Structure Of Acyl-[acyl-Carrier-Protein]--U		2e-27
1j2z_A	270	Crystal Structure Of Udp-n-acetylglucosamine Acyltr		1e-26
3hsq_A	259	Structural Basis For The Sugar Nucleotide And Acyl		4e-25
3r0s_A	266	Udp-N-Acetylglucosamine Acyltransferase From Campyl		7e-25
3eh0_A	341	Crystal Structure Of Lpxd From Escherichia Coli Len		2e-09
2iu8_A	374	Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Com		2e-07
3pmo_A	372	The Structure Of Lpxd From Pseudomonas Aeruginosa A		1e-06
4e75_A	357	Structure Of Lpxd From Acinetobacter Baumannii At 2		7e-05
4eab_A	220	X-Ray Crystal Structure Of The H141a Mutant Of Gdp-		2e-04
4eaa_A	220	X-Ray Crystal Structure Of The H141n Mutant Of Pero		2e-04
4ea7_A	220	X-Ray Crystal Structure Of Perb From Caulobacter Cr		2e-04

>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis Udp-N-Acetylglucosamine Acyltransferase Length = 305

Iteration: 1
 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 175/208 (84%)
Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
            IHP+++VHPNA+IG+GVSVGP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ C+LMTGA
Sbjct: 9   LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGA 68
Query: 131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSK 190
           VVGD+LPG T  GCNNIIGHHAVVGVKCQD+KYK GDECF+ +GNNNE RE  SIHRSSK
Sbjct: 69  VVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSK 128
Query: 191 SGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCX 250
             D+TVIGDNNLIMGSCHIAHDCKIG+ NIFANNTLLAGHVVVED THTAGA V+HQFC 
Sbjct: 129 PSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCH 188
Query: 251 XXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                         QDVPKY MVAGERA
Sbjct: 189 IGSFAFIGGGSVVSQDVPKYMMVAGERA 216

>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a Resolution (P63 Form) Length = 265

Iteration: 1
 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 114/209 (54%), Gaps = 24/209 (11%)
Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
            IH T+I+ P+A+I   V +GP+C IG    +G G  L+  SH+                
Sbjct: 9   LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLH--SHV---------------- 50
Query: 131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS- 189
           VVG    G T  G NN I   A VG  CQD+KYK G+E ++++GNNN  REH S+HR + 
Sbjct: 51  VVG----GFTRIGQNNEIFQFASVGEVCQDLKYK-GEETWLEIGNNNLIREHCSLHRGTV 105
Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
           +    T IG +NL+M + HIAHDC +G++NIFANN  +AGHV + D+    G   IHQFC
Sbjct: 106 QDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFC 165
Query: 250 XXXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                          +DVP Y M +G  A
Sbjct: 166 KIDSYSMIGGASLILKDVPAYVMASGNPA 194

>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a Resolution (P212121 Form) Length = 294

Iteration: 1
 Score =  137 bits (345), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 114/209 (54%), Gaps = 24/209 (11%)
Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
            IH T+I+ P+A+I   V +GP+C IG    +G G  L+  SH+                
Sbjct: 38  LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLH--SHV---------------- 79
Query: 131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS- 189
           VVG    G T  G NN I   A VG  CQD+KYK G+E ++++GNNN  REH S+HR + 
Sbjct: 80  VVG----GFTRIGQNNEIFQFASVGEVCQDLKYK-GEETWLEIGNNNLIREHCSLHRGTV 134
Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
           +    T IG +NL+M + HIAHDC +G++NIFANN  +AGHV + D+    G   IHQFC
Sbjct: 135 QDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQFC 194
Query: 250 XXXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                          +DVP Y M +G  A
Sbjct: 195 KIDSYSMIGGASLILKDVPAYVMASGNPA 223

>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine Acyltransferase Length = 264

Iteration: 1
 Score =  130 bits (327), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
           F+HPT+IV   A IG    +GPFC +G   ++G+G +L   SH+  N             
Sbjct: 9   FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL--KSHVVVN------------- 53
Query: 131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS- 189
                  G T  G +N I   A +G   QD+KY +G+   V++G+ N  RE V+IHR + 
Sbjct: 54  -------GHTKIGRDNEIYQFASIGEVNQDLKY-AGEPTRVEIGDRNRIRESVTIHRGTV 105
Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
           + G  T +G +NL+M + HIAHDC +GN  I ANN  LAGHV V+D+    G   +HQFC
Sbjct: 106 QGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFC 165
Query: 250 XXXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                          QDVP Y +  G  A
Sbjct: 166 IIGAHVMVGGCSGVAQDVPPYVIAQGNHA 194

>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is Competitive With Acyl-Acp Length = 262

Iteration: 1
 Score =  130 bits (327), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
           F+HPT+IV   A IG    +GPFC +G   ++G+G +L   SH+  N             
Sbjct: 7   FVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL--KSHVVVN------------- 51
Query: 131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS- 189
                  G T  G +N I   A +G   QD+KY +G+   V++G+ N  RE V+IHR + 
Sbjct: 52  -------GHTKIGRDNEIYQFASIGEVNQDLKY-AGEPTRVEIGDRNRIRESVTIHRGTV 103
Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
           + G  T +G +NL+M + HIAHDC +GN  I ANN  LAGHV V+D+    G   +HQFC
Sbjct: 104 QGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFC 163
Query: 250 XXXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                          QDVP Y +  G  A
Sbjct: 164 IIGAHVMVGGCSGVAQDVPPYVIAQGNHA 192

>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N- Acetylglucosamine O-Acyltransferase From Burkholderia Thailandensis Length = 283

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+I+ P A + + V VGP+  +GS   +G              T +G H ++     
Sbjct: 25  IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIG------------ARTTIGSHSVI----- 67
Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS-K 190
                 G T  G +N IGH+A VG + QDMKYK      V +G+ N  RE  +IH  + +
Sbjct: 68  -----EGHTTIGEDNRIGHYASVGGRPQDMKYKDEPTRLV-IGDRNTIREFTTIHTGTVQ 121
Query: 191 SGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCX 250
               T +GD+N IM   HI HDC++G++ + ++N  +AGHV + D+    G   +HQ+  
Sbjct: 122 DAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVR 181
Query: 251 XXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                         QD+P + + AG +A
Sbjct: 182 IGAHSMLGGASALVQDIPPFVIAAGNKA 209

>pdb|1J2Z|A Chain A, Crystal Structure Of Udp-n-acetylglucosamine Acyltransferase Length = 270

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 101/208 (48%), Gaps = 24/208 (11%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           I  T+I+ P A I +GV +G FC IG   KL +G  L+ +                    
Sbjct: 4   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNV------------------- 44
Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
               L G T  G N  I   AV+G + QD+KYK G+   + +G +N  RE   I+  ++ 
Sbjct: 45  ---TLQGHTFVGKNTEIFPFAVLGTQPQDLKYK-GEYSELIIGEDNLIREFCMINPGTEG 100
Query: 192 G-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCX 250
           G  +T+IGD NL+M   H+AHDC IG++ I AN   LAGH+ + DY +  G   IHQF  
Sbjct: 101 GIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVR 160
Query: 251 XXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                         +DVP Y  V G RA
Sbjct: 161 IAKGCMIAGKSALGKDVPPYCTVEGNRA 188

>pdb|3HSQ|A Chain A, Structural Basis For The Sugar Nucleotide And Acyl Chain Selectivity Of Leptospira Interrogans Lpxa Length = 259

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+I+ P A + + V VGP+  I     + +G ++     I   +E+G       GAV
Sbjct: 3   IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAV 62
Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
           +G                      V  QD+ +         +G++N FRE+ +IH+ +K 
Sbjct: 63  IG----------------------VMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKE 100
Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCXX 251
              TVIG+ N  MG+ H+ HDC +GN NI  +  +LAGHV + ++   +G + +HQFC  
Sbjct: 101 DSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFV 160
Query: 252 XXXXXXXXXXXXXQDVPKYSMVAG 275
                        QDVP YS V G
Sbjct: 161 GDYSMVAGLAKVVQDVPPYSTVDG 184

>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter Jejuni Length = 266

Iteration: 1
 Score =  110 bits (276), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 99/208 (47%), Gaps = 23/208 (11%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHP++++   A +G  V +  +  +   AK+G+  ++   + I  +T +GDH  + + A+
Sbjct: 7   IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAI 66
Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
           VG D+P                     QD+ YK   +  V +G N   RE  +I+  +  
Sbjct: 67  VG-DIP---------------------QDISYKEEQKSGVVIGKNATIREFATINSGTAK 104
Query: 192 GDR-TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCX 250
           GD  T IGDN  I   CHIAHDC +GN  I ANN  LAGHV + D+T   G   IHQF  
Sbjct: 105 GDGFTRIGDNAFIXAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFVK 164
Query: 251 XXXXXXXXXXXXXXQDVPKYSMVAGERA 278
                         QD+  + +  G RA
Sbjct: 165 VGEGCXIAGASALSQDIVPFCLAEGNRA 192

>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli Length = 341

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           I   +++     +G  V +G  C +G  +K+G G  L+ +  I+   ++G +C++ +G V
Sbjct: 118 IGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTV 177
Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
           VG D      FG  N  G+     VK   +         V +G+  E     +I R +  
Sbjct: 178 VGAD-----GFGYANDRGNW----VKIPQIGR-------VIIGDRVEIGACTTIDRGAL- 220
Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246
            D T+IG+  +I   C IAH+  IG+    A   ++AG + +  Y    GA VI+
Sbjct: 221 -DDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVIN 274

>pdb|2IU8|A Chain A, Chlamydia Trachomatis Lpxd With 25mm Udpglcnac (Complex I) Length = 374

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 25/187 (13%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCT------IGSAAKLGDGCL------------LYPSSH 113
           IHPT+++HP AII   V + P+        +GSA  +G G +            ++P   
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVV 186
Query: 114 IFGNTELGDHCILMTGAVVGDDLPG--QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFV 171
           I     +G   I+  GAV+G    G   + FG +  + H   +G    +   + G    +
Sbjct: 187 IRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKH---LGKVIIEDDVEIGANTTI 243
Query: 172 DVG--NNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG 229
           D G   ++  RE   I    +   +  +G +++I+    IA   KIGN+ I      + G
Sbjct: 244 DRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQAGITG 303
Query: 230 HVVVEDY 236
           H+ + D+
Sbjct: 304 HICIADH 310

>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A Resolution Length = 372

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
Query: 76  SIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDD 135
           +++   A IG GVS+G  C IG+ + +G+G  L P   ++ +  +G    + +GAV+G +
Sbjct: 144 AVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGE 203
Query: 136 LPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRT 195
                 FG  N  G         Q +    G    V +G++ E   + +I R + S   T
Sbjct: 204 -----GFGFANEKG-------VWQKIAQIGG----VTIGDDVEIGANTTIDRGALS--DT 245
Query: 196 VIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAI 243
           +IG+   +     IAH+ +IG++   A    ++G   +  +   AG +
Sbjct: 246 LIGNGVKLDNQIMIAHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGV 293

>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a Resolution (p21 Form) Length = 357

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 18/182 (9%)
Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           I  T+ +HP+A+I +   +G +  IG    +GD  ++   + +  N E+G  C + +   
Sbjct: 105 IESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVT 164
Query: 132 V--GDDLPGQTVFGCNNIIGHH--------------AVVGVKCQDMKYKSGDECFVDVG- 174
           +     L  +     + +IG                A +G        + G  C +D G 
Sbjct: 165 ITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGA 224
Query: 175 -NNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVV 233
            +N    + V I    +      IG N  I   C IA   KIG   I A    +AGH+ +
Sbjct: 225 LDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSI 284
Query: 234 ED 235
            D
Sbjct: 285 AD 286

>pdb|4EAB|A Chain A, X-Ray Crystal Structure Of The H141a Mutant Of Gdp-Perosamine N-Acetyl Transferase From Caulobacter Crescentus In Complex With Coa And Gdp- Perosamine Length = 220

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 72  IHPTSIVHPNAIIGQGVSV------------GPFCTIGSAA------KLGDGCLLYPSSH 113
           IHP+++V P+  +G+GV+V            G    I + A      +LG  C L P+S 
Sbjct: 102 IHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDADCRLGAACHLGPASA 161
Query: 114 IFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154
           + G   +G+   L  GA V   +PG T+ G + I+G   VV
Sbjct: 162 LAGGVSVGERAFLGVGARV---IPGVTI-GADTIVGAGGVV 198

>pdb|4EAA|A Chain A, X-Ray Crystal Structure Of The H141n Mutant Of Perosamine N- Acetyltransferase From Caulobacter Crescentus In Complex With Coa And Gdp-Perosamine Length = 220

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 72  IHPTSIVHPNAIIGQGVSV------------GPFCTIGSAA------KLGDGCLLYPSSH 113
           IHP+++V P+  +G+GV+V            G    I + A      +LG  C L P+S 
Sbjct: 102 IHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDNDCRLGAACHLGPASA 161
Query: 114 IFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154
           + G   +G+   L  GA V   +PG T+ G + I+G   VV
Sbjct: 162 LAGGVSVGERAFLGVGARV---IPGVTI-GADTIVGAGGVV 198

>pdb|4EA7|A Chain A, X-Ray Crystal Structure Of Perb From Caulobacter Crescentus In Complex With Coa And Gdp-Perosamine At 1.0 Angstrom Resolution Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 72  IHPTSIVHPNAIIGQGVSV------------GPFCTIGSAA------KLGDGCLLYPSSH 113
           IHP+++V P+  +G+GV+V            G    I + A      +LG  C L P+S 
Sbjct: 102 IHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASA 161
Query: 114 IFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154
           + G   +G+   L  GA V   +PG T+ G + I+G   VV
Sbjct: 162 LAGGVSVGERAFLGVGARV---IPGVTI-GADTIVGAGGVV 198

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	300
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	1e-112
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	8e-99
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	1e-95
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	3e-95
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-94
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	2e-91
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	4e-37
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	1e-33
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	7e-33
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	1e-32
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-21
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	4e-20
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	3e-13
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	2e-11
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	5e-19
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	2e-13
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	6e-08
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	4e-06
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	4e-15
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	8e-14
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	3e-07
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	1e-06
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	2e-13
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	6e-06
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	5e-12
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	3e-10
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	4e-10
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	2e-08
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	2e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	3e-07
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	8e-04
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	3e-07
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	4e-07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	7e-07
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	7e-04
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	1e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	2e-06
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	3e-04
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	3e-05
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	3e-05
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	3e-05
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	4e-05
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	7e-05
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	7e-05
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	8e-05
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	8e-05
3r3r_A	187	Ferripyochelin binding protein; structural genomic	1e-04
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	1e-04
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	1e-04
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	9e-04

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score =  326 bits (838), Expect = e-112
 Identities = 185/231 (80%), Positives = 204/231 (88%)

Query: 64  TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDH 123
            S  S   IHP+++VHPNA+IG+GVSVGP+CTIGS+ KLG+GC LYPSSH+FGNTELG+ 
Sbjct: 2   DSRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGES 61

Query: 124 CILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV 183
           C+LMTGAVVGD+LPG T  GCNNIIGHHAVVGVKCQD+KYK GDECF+ +GNNNE RE  
Sbjct: 62  CVLMTGAVVGDELPGYTFIGCNNIIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFC 121

Query: 184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAI 243
           SIHRSSK  D+TVIGDNNLIMGSCHIAHDCKIG+ NIFANNTLLAGHVVVED THTAGA 
Sbjct: 122 SIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTLLAGHVVVEDNTHTAGAS 181

Query: 244 VIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           V+HQFCHIGS +FIGGGSVVSQDVPKY MVAGERA LRGLNLEGLRR GF 
Sbjct: 182 VVHQFCHIGSFAFIGGGSVVSQDVPKYMMVAGERAELRGLNLEGLRRNGFT 232

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score =  289 bits (743), Expect = 8e-99
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 22/223 (9%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           IHPT+I+ P A + + V VGP+  I     + +G ++     I   +E+G          
Sbjct: 3   IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIG---------- 52

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS 191
                         N     AV+GV  QD+ +         +G++N FRE+ +IH+ +K 
Sbjct: 53  ------------KFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKE 100

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251
              TVIG+ N  MG+ H+ HDC +GN NI  +  +LAGHV + ++   +G + +HQFC +
Sbjct: 101 DSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFV 160

Query: 252 GSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           G +S + G + V QDVP YS V G  + + GLN  G++R GF+
Sbjct: 161 GDYSMVAGLAKVVQDVPPYSTVDGNPSTVVGLNSVGMKRAGFS 203

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score =  282 bits (723), Expect = 1e-95
 Identities = 92/229 (40%), Positives = 130/229 (56%), Gaps = 24/229 (10%)

Query: 67  SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCIL 126
             S+F+HPT+IV   A IG    +GPFC +G   ++G+G +L     + G+T++G     
Sbjct: 3   DKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIG----- 57

Query: 127 MTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIH 186
                             +N I   A +G   QD+KY  G+   V++G+ N  RE V+IH
Sbjct: 58  -----------------RDNEIYQFASIGEVNQDLKYA-GEPTRVEIGDRNRIRESVTIH 99

Query: 187 RSSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI 245
           R +  G   T +G +NL+M + HIAHDC +GN  I ANN  LAGHV V+D+    G   +
Sbjct: 100 RGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAV 159

Query: 246 HQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           HQFC IG+H  +GG S V+QDVP Y +  G  A   G+N+EGL+RRGF+
Sbjct: 160 HQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFS 208

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score =  281 bits (722), Expect = 3e-95
 Identities = 84/231 (36%), Positives = 127/231 (54%), Gaps = 24/231 (10%)

Query: 65  SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHC 124
              S S IHPT+I+ P A + + V VGP+  +GS   +G    +   S I G+T +G   
Sbjct: 18  GPGSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIG--- 74

Query: 125 ILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVS 184
                               +N IGH+A VG + QDMKYK  +   + +G+ N  RE  +
Sbjct: 75  -------------------EDNRIGHYASVGGRPQDMKYK-DEPTRLVIGDRNTIREFTT 114

Query: 185 IHRSSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAI 243
           IH  +      T +GD+N IM   HI HDC++G++ + ++N  +AGHV + D+    G  
Sbjct: 115 IHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMS 174

Query: 244 VIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
            +HQ+  IG+HS +GG S + QD+P + + AG +A   G+N+EGLRRRGF+
Sbjct: 175 GVHQYVRIGAHSMLGGASALVQDIPPFVIAAGNKAEPHGINVEGLRRRGFS 225

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score =  278 bits (713), Expect = 4e-94
 Identities = 79/227 (34%), Positives = 117/227 (51%), Gaps = 23/227 (10%)

Query: 66  SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCI 125
           S++   IHP++++   A +G  V +  +  +   AK+G+  ++   + I  +T +GD   
Sbjct: 1   SNAMKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGD--- 57

Query: 126 LMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSI 185
                              ++ +  +A+VG   QD+ YK   +  V +G N   RE  +I
Sbjct: 58  -------------------HSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATI 98

Query: 186 HRSSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIV 244
           +  +  GD  T IGDN  IM  CHIAHDC +GN  I ANN  LAGHV + D+T   G   
Sbjct: 99  NSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTP 158

Query: 245 IHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR 291
           IHQF  +G    I G S +SQD+  + +  G RA +R LNL G+RRR
Sbjct: 159 IHQFVKVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRR 205

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score =  271 bits (695), Expect = 2e-91
 Identities = 83/224 (37%), Positives = 117/224 (52%), Gaps = 24/224 (10%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           S I  T+I+ P A I +GV +G FC IG   KL +G  L+ +  + G+T +G        
Sbjct: 2   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGK------- 54

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
                          N  I   AV+G + QD+KYK G+   + +G +N  RE   I+  +
Sbjct: 55  ---------------NTEIFPFAVLGTQPQDLKYK-GEYSELIIGEDNLIREFCMINPGT 98

Query: 190 KSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQF 248
           + G  +T+IGD NL+M   H+AHDC IG++ I AN   LAGH+ + DY +  G   IHQF
Sbjct: 99  EGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQF 158

Query: 249 CHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRG 292
             I     I G S + +DVP Y  V G RA +RGLN   +R+  
Sbjct: 159 VRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQLL 202

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score =  132 bits (333), Expect = 4e-37
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 37/229 (16%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128
            + I  ++I+    IIG+ V++     I     + D   +   S I   + LG++ +   
Sbjct: 2   PNNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFY 61

Query: 129 GAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRS 188
              +    P   + G N +I    V+                  +G+N +    V+I  +
Sbjct: 62  NDRINKKHP--LIIGENALIRTENVIY-------------GDTIIGDNFQTGHKVTIREN 106

Query: 189 SKSGDRTVIGDNNLIMGS------CHIAHDCKIGNYNIFANNTLLAGHVV---------- 232
           +K G+   IG  + I          +I  +  +G  +I  +   L  HVV          
Sbjct: 107 TKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVWLFPHVVLTNDPTPPSN 166

Query: 233 ------VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
                 +E +   A   V+    HI   + +G G+VV++DVPK ++V G
Sbjct: 167 ELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVVVG 215

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score =  125 bits (316), Expect = 1e-33
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 37/233 (15%)

Query: 62  YETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELG 121
                S    IHPT+++HP AII   V + P+  +   A +G  C +   S I   + +G
Sbjct: 117 ITPVDSGFPGIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVG 176

Query: 122 DHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG------VKCQDMKYKS---------G 166
           +H  +    V+ +        G   II   AV+G      V     ++K           
Sbjct: 177 EHSYIHPRVVIRER----VSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIE 232

Query: 167 DECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDN----NLIMGSCHIAHDCKIGNYNIFA 222
           D+  V++G N       +I R       +V+ +     NL+     IAH  ++G +++  
Sbjct: 233 DD--VEIGAN------TTIDRG--RFKHSVVREGSKIDNLV----QIAHQVEVGQHSMIV 278

Query: 223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
               +AG   + ++    G   I     I  H  +   + V++ +    +  G
Sbjct: 279 AQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGG 331

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score =  122 bits (309), Expect = 7e-33
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 26/221 (11%)

Query: 62  YETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELG 121
            +T+   +  I P++++   A +G  VS+G    I S  +LGD  ++     +  N+++G
Sbjct: 90  LDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIG 149

Query: 122 DHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG------VKCQDMKYK---SGDECFVD 172
               L     +  +       G N +I    VVG         +    K    G    V 
Sbjct: 150 AGSRLWANVTIYHE----IQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGR---VI 202

Query: 173 VGNNNEFREHVSIHRSSKSGDRTVIGDN----NLIMGSCHIAHDCKIGNYNIFANNTLLA 228
           +G+  E     +I R   + D T+IG+     N       IAH+  IG+    A   ++A
Sbjct: 203 IGDRVEIGACTTIDRG--ALDDTIIGNGVIIDNQC----QIAHNVVIGDNTAVAGGVIMA 256

Query: 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPK 269
           G + +  Y    GA VI+    I     + G  +V + + +
Sbjct: 257 GSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITE 297

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score =  122 bits (309), Expect = 1e-32
 Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 36/226 (15%)

Query: 62  YETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELG 121
           ++    +++ IHPT+IV  +A +    SVG +  I S A++G G  +     I   + +G
Sbjct: 112 FDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIG 171

Query: 122 DHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG------VKCQDMKYKS--------GD 167
           +   L     +  D       G    I   AV+G         + +  K         GD
Sbjct: 172 EGGWLAPRVTLYHD----VTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGD 227

Query: 168 ECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDN----NLIMGSCHIAHDCKIGNYNIFAN 223
           +  V++G N       +I R   +   T+IG+     N I     IAH+ +IG++   A 
Sbjct: 228 D--VEIGAN------TTIDRG--ALSDTLIGNGVKLDNQI----MIAHNVQIGDHTAMAA 273

Query: 224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPK 269
              ++G   +  +   AG + +     I  + F+ G ++V++ + +
Sbjct: 274 CVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRSITE 319

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 89.3 bits (221), Expect = 1e-21
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 62/231 (26%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
             + IHPT+IV   A IG    +  +  I   A++G+GC L  +  +     +G+     
Sbjct: 2   HMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRV--- 58

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHR 187
                               I ++                               VS++ 
Sbjct: 59  -------------------KIQNN-------------------------------VSVYD 68

Query: 188 SSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQ 247
           +    D    G + +     +     +  +              +V           +  
Sbjct: 69  NVFLEDDVFCGPSMVFTNVYNPRAAIERKSE---------YRDTIVRQGATLGANCTVVC 119

Query: 248 FCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED 298
              IG ++F+G G+VV++DVP +++V G  A   G       +    +  +
Sbjct: 120 GATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQLDLPLRGN 170

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 85.0 bits (211), Expect = 4e-20
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 166 GDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT 225
                V+         +V I        +  I    ++  S  I H+C IG ++  +   
Sbjct: 85  SPSAIVEENAGILIMPYVVI------NAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGA 138

Query: 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
             AG+V +           +     +   S +GGG+ + ++  +  +  G
Sbjct: 139 KCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVG 188

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 70  SFIHPTSIVHPNAII--GQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127
           + IH ++++ P+AI+    G+ + P+  I + AK+  G +L  SS I     +G+   + 
Sbjct: 76  NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVS 135

Query: 128 TGAVVGDDLPGQTVFGCNNIIGHHAVV 154
            GA       G    G N  +G ++ V
Sbjct: 136 VGAKCA----GNVKIGKNCFLGINSCV 158

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
             I P  +++  A I +GV +     I     +G+   +   +   GN ++G +C L   
Sbjct: 96  ILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGIN 155

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVV 154
           + V   LP  ++   ++I+G  A +
Sbjct: 156 SCV---LPNLSL-ADDSILGGGATL 176

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 82.8 bits (205), Expect = 5e-19
 Identities = 26/106 (24%), Positives = 43/106 (40%)

Query: 173 VGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVV 232
           V  +    E V++         + IGD  +I     + HDC++G        + LAG V 
Sbjct: 108 VSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVS 167

Query: 233 VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA 278
           V +         +     IG+ + +G G VV +D+P   +  G  A
Sbjct: 168 VGERAFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPA 213

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           + IHP+++V P+  +G+GV+V     I + + +GD  ++   + +  +  LG  C L   
Sbjct: 100 NAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPA 159

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVV 154
           + +     G    G    +G  A V
Sbjct: 160 SALA----GGVSVGERAFLGVGARV 180

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           + I+  ++V  +  +G    +GP   +     +G+   L   + +     +G   I+  G
Sbjct: 136 AIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAG 195

Query: 130 AVVGDDLP-GQTVFG 143
            VV  DLP      G
Sbjct: 196 GVVVRDLPDSVLAIG 210

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 16/91 (17%)

Query: 70  SFIHPTSIVHPNAIIGQ------GVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDH 123
             +     ++ ++ IG       G  V   C +      G  C L P+S + G   +G+ 
Sbjct: 118 VAVMAGVAINADSWIGDLAIINTGAVVDHDCRL------GAACHLGPASALAGGVSVGER 171

Query: 124 CILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154
             L  GA V   +PG T+ G + I+G   VV
Sbjct: 172 AFLGVGARV---IPGVTI-GADTIVGAGGVV 198

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* Length = 205

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 52/210 (24%)

Query: 69  SSFIHPTSI-VHPNAIIGQGVSVGPFCTI--GSAAKLGDGCLLYPSSHIFGNTELGDHCI 125
           +SF     +       +G+ V +    +I       +G+   +     + G   +G +  
Sbjct: 19  NSFYSQEELKKIGFLSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSH 78

Query: 126 LMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSI 185
           +     +     G         I    +V                +D  + N        
Sbjct: 79  IAAYTALYGGEVG-IEMYDFANISSRTIVY-------------AAIDDFSGNAL------ 118

Query: 186 HRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI 245
                 G        N+  G   +     IG     A++ +                   
Sbjct: 119 -----MGPTIPNQYKNVKTGKVILKKHVIIG-----AHSIIFPN---------------- 152

Query: 246 HQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
                IG    +G  S+V + +  + +  G
Sbjct: 153 ---VVIGEGVAVGAMSMVKESLDDWYIYVG 179

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 68.7 bits (168), Expect = 8e-14
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN--NTLLA 228
           V++G+N     + +I+  +  G+ ++I  N ++ G   +  +C +G   + A       A
Sbjct: 104 VEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSA 163

Query: 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV 279
             V+VED       +V+ +   +G  + +  G+VV++DVP Y++VAG  A 
Sbjct: 164 KPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPAR 214

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131
           I P +I+  +  IG    +    TI   A +G+G ++  ++ + G   +G +C +  GAV
Sbjct: 94  IEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAV 153

Query: 132 VGDDLPGQTVFGCNNIIGHHAVVG 155
           +   +  +       I+    V+G
Sbjct: 154 LAGVI--EPPSAKPVIVEDDVVIG 175

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTE--------LG 121
           + I   + ++  A+IG+G  +     +G  A +G  C +   + + G  E        + 
Sbjct: 110 AVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVE 169

Query: 122 DHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155
           D  ++    VV   L G T       +G  AVV 
Sbjct: 170 DDVVIGANVVV---LEGVT-------VGKGAVVA 193

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 33/220 (15%), Positives = 62/220 (28%), Gaps = 73/220 (33%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHC------- 124
           +     +    II +   +     I     +G G  + P+S++   T L +         
Sbjct: 235 VEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVE 294

Query: 125 ----ILMTGAVV------GDDLPGQTV-FGCNNIIGHHAVVGVKCQDMKYKSGDECFVDV 173
               ++M G+ +      GD +  + V FG   +I               +  ++     
Sbjct: 295 VKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLI---------AN---LRFDEKEVKVN 342

Query: 174 GNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVV 233
                                  IG +             + G      N T+L G V  
Sbjct: 343 VKGKRISSGRRKL-------GAFIGGH------------VRTG-----INVTILPG-VK- 376

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV 273
                            IG+++ I  G+VV++DV      
Sbjct: 377 -----------------IGAYARIYPGAVVNRDVGYGEFF 399

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH 230
            +V +N + +  V I       +   I     I G  +I    +IG  +     T+L   
Sbjct: 233 GNVEDNVKIKGKVII------EEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEK 286

Query: 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV 267
             +        ++ I +   I   S++ G SV+++DV
Sbjct: 287 NKIGASVEVKESV-IMEGSKIPHLSYV-GDSVIAEDV 321

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 64.5 bits (156), Expect = 5e-12
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 10/216 (4%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128
           ++     + +  NA I Q  ++     IG    +    +    + I  N  +    +   
Sbjct: 65  NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADI-SDGARISDNVTIQSSSVREE 123

Query: 129 GAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVD---VGNNNEFREHVSI 185
            A+ GD                H    +     +        V    +  N         
Sbjct: 124 CAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIE 183

Query: 186 HRSSKSGDRTVIGD---NNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGA 242
           HR+       + GD   N  I     +    ++           L     V ++    G 
Sbjct: 184 HRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGN 243

Query: 243 IVIHQFCHIGSHSFIGGGSVVSQD---VPKYSMVAG 275
            V+     +G H+ + GG ++  D   +  ++ + G
Sbjct: 244 CVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQG 279

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* Length = 209

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 30/133 (22%)

Query: 166 GDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG--------- 216
           G+  + D  N   F + +  H      D+  IG        C I     I          
Sbjct: 33  GEYSYYDSKNGETFDKQILYH-YPILNDKLKIGKF------CSIGPGVTIIMNGANHRMD 85

Query: 217 --NYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC------------HIGSHSFIGGGSV 262
              Y           H+   D     G  +I                 IG  + +   SV
Sbjct: 86  GSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSV 145

Query: 263 VSQDVPKYSMVAG 275
           V +D+  Y +  G
Sbjct: 146 VVKDIAPYMLAGG 158

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} Length = 219

 Score = 57.7 bits (139), Expect = 4e-10
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 30/133 (22%)

Query: 166 GDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG--------- 216
           G+  + D      F + V  H     GD+ +IG        C I                
Sbjct: 38  GEYSYYDSKRGESFEDQVLYHYEV-IGDKLIIGRF------CSIGPGTTFIMNGANHRMD 90

Query: 217 --NYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC------------HIGSHSFIGGGSV 262
              Y           ++         G I I                 IG  + I   +V
Sbjct: 91  GSTYPFHLFRMGWEKYMPSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAV 150

Query: 263 VSQDVPKYSMVAG 275
           V+++V  YS+V G
Sbjct: 151 VTKNVAPYSIVGG 163

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} Length = 212

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 30/152 (19%), Positives = 48/152 (31%), Gaps = 24/152 (15%)

Query: 140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGD 199
            V   N I+G H+            S D+C   +    +  + + I      G    IG 
Sbjct: 19  QVTNPNIIVGKHSYYSGYY---HGHSFDDCVRYLHPERDDVDKLVI------GSFCSIGS 69

Query: 200 NNLIMGSCHIAHDC-KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC--------- 249
             + M + +  H    I  +  F  +          D    +G  +I             
Sbjct: 70  GAVFMMAGNQGHRSDWISTFPFFYQDN--DNFADARDGFTRSGDTIIGHDVWIGTEAMIM 127

Query: 250 ---HIGSHSFIGGGSVVSQDVPKYSMVAGERA 278
               IG  + I   SVV++DV  Y +V    A
Sbjct: 128 PGVKIGHGAIIASRSVVTKDVAPYEVVGSNPA 159

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 49/248 (19%), Positives = 93/248 (37%), Gaps = 75/248 (30%)

Query: 70  SFIHPTSI-VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCIL-- 126
           SF++P +  +  +  I   V +     +    K+G   +L   +++  ++ +G   ++  
Sbjct: 262 SFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYV-VDSTIGAGAVITN 320

Query: 127 --MTGAVVGDDLPGQTVFGCNNIIG---H---HAVVGVKCQDMKYKSGDECFVDVGNNNE 178
             +  + V D        G    +G   H   ++ +G +        G+  FV+V     
Sbjct: 321 SMIEESSVAD--------GVT--VGPYAHIRPNSSLGAQV-----HIGN--FVEVKG--- 360

Query: 179 FREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN-------NTLLAGHV 231
                SI  ++K+G  T IG+       C +  +   G   I  N        T      
Sbjct: 361 ----SSIGENTKAGHLTYIGN-------CEVGSNVNFGAGTITVNYDGKNKYKT------ 403

Query: 232 VVEDYTHTAG------AIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG--L 283
           V+ D     G      A V      +G +S +G GS +++DVP  ++     A+ RG  +
Sbjct: 404 VIGDNVFV-GSNSTIIAPV-----ELGDNSLVGAGSTITKDVPADAI-----AIGRGRQI 452

Query: 284 NLEGLRRR 291
           N +    R
Sbjct: 453 NKDEYATR 460

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 83/242 (34%)

Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
            I    I+  N  +G  V +G  C +     +G+   + P S +               +
Sbjct: 273 EIDVNVIIEGNVKLGDRVKIGTGCVL-KNVVIGNDVEIKPYSVL-------------EDS 318

Query: 131 VVGDDLPGQTVFGCNNIIG---H---HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVS 184
           +VG+             IG        A +  +        G+  FV++          +
Sbjct: 319 IVGE--------KAA--IGPFSRLRPGAELAAET-----HVGN--FVEIKK-------ST 354

Query: 185 IHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN-------NTLLAGHVVVEDYT 237
           + + SK    T +GD         I  +C IG   I  N        T      ++ D  
Sbjct: 355 VGKGSKVNHLTYVGD-------SEIGSNCNIGAGVITCNYDGANKFKT------IIGDDV 401

Query: 238 HTAG------AIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG--LNLEGLR 289
              G      A V      + + + IG G+ +++DV +  +      + R    +++G +
Sbjct: 402 FV-GSDTQLVAPV-----KVANGATIGAGTTITRDVGENEL-----VITRVAQRHIQGWQ 450

Query: 290 RR 291
           R 
Sbjct: 451 RP 452

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSH 254
             I  N +I G+  +    KIG   +  N  +    V ++ Y+    + ++ +   IG  
Sbjct: 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGND-VEIKPYSVLEDS-IVGEKAAIGPF 329

Query: 255 SFIGGGSVVSQDV 267
           S +  G+ ++ + 
Sbjct: 330 SRLRPGAELAAET 342

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 51/248 (20%), Positives = 89/248 (35%), Gaps = 75/248 (30%)

Query: 70  SFIHPTSI-VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCIL-- 126
           + + P +  +  +  IG+   + P   +    ++G  C++ P + +  +  +GD   +  
Sbjct: 271 TVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTL-TDVAVGDGASVVR 329

Query: 127 --MTGAVVGDDLPGQTVFGCNNIIG---H---HAVVGVKCQDMKYKSGDECFVDVGNNNE 178
              + + +GD        G    +G   +      +G        K G   FV+V N   
Sbjct: 330 THGSSSSIGD--------GAA--VGPFTYLRPGTALGADG-----KLGA--FVEVKN--- 369

Query: 179 FREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN-------NTLLAGHV 231
                +I   +K    T +GD         I     IG  ++F N        T      
Sbjct: 370 ----STIGTGTKVPHLTYVGD-------ADIGEYSNIGASSVFVNYDGTSKRRT------ 412

Query: 232 VVEDYTHTAG------AIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG--L 283
            V  +  T G      A V      IG  ++ G G+VV +DVP  ++     AV  G   
Sbjct: 413 TVGSHVRT-GSDTMFVAPV-----TIGDGAYTGAGTVVREDVPPGAL-----AVSAGPQR 461

Query: 284 NLEGLRRR 291
           N+E   +R
Sbjct: 462 NIENWVQR 469

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* Length = 212

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 25/169 (14%), Positives = 44/169 (26%), Gaps = 37/169 (21%)

Query: 110 PSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDEC 169
           P+  +   +    +    +       L          +IG    +G              
Sbjct: 21  PNIRVGRYSYYSGYYHGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAA---------- 70

Query: 170 FVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIM---GSCHIAHDCKIGNYNIFANNTL 226
           F+  GN     E  S        +              G   I H+  IG          
Sbjct: 71  FIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIG---------- 120

Query: 227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
                          A+ +     +G  + IG  ++V+ DV  Y++V G
Sbjct: 121 -------------TEAMFMPG-VRVGHGAIIGSRALVTGDVEPYAIVGG 155

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 49.4 bits (119), Expect = 7e-07
 Identities = 41/242 (16%), Positives = 77/242 (31%), Gaps = 83/242 (34%)

Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130
            I    I+  + I+G  V +G  C +     +GD   + P + +               A
Sbjct: 276 TIDTNVIIEGHVILGDRVRIGTGCVL-KNCVIGDDSEISPYTVL-------------EDA 321

Query: 131 VVGDDLPGQTVFGCNNIIG---H---HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVS 184
            +           C   +G        A +           G+  FV++           
Sbjct: 322 RLDA--------NCT--VGPFARLRPGAELAEGA-----HVGN--FVEIKK-------AR 357

Query: 185 IHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN-------NTLLAGHVVVEDYT 237
           + + SK+G  + +GD         I     IG   I  N        T      ++ D  
Sbjct: 358 LGKGSKAGHLSYLGD-------AEIGAGVNIGAGTITCNYDGANKFKT------IIGDDV 404

Query: 238 HTAG------AIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG--LNLEGLR 289
              G      A V      + + + IG G+ V++DV +  +      + R   ++++G +
Sbjct: 405 FV-GSDTQLVAPV-----TVANGATIGAGTTVTRDVAENEL-----VISRVKQVHIQGWK 453

Query: 290 RR 291
           R 
Sbjct: 454 RP 455

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 2/73 (2%)

Query: 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSH 254
             I  N +I G   +    +IG   +  N  +      +  YT    A  +   C +G  
Sbjct: 275 ITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDD-SEISPYTVLEDA-RLDANCTVGPF 332

Query: 255 SFIGGGSVVSQDV 267
           + +  G+ +++  
Sbjct: 333 ARLRPGAELAEGA 345

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} Length = 252

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 26/132 (19%)

Query: 166 GDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC---KIGNYNIFA 222
           GD  +V +  N++ +  +   +    G + +IG    I     +  D     IG+  + A
Sbjct: 81  GDNNYVRIHKNSKIKGDIVATK----GSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIA 136

Query: 223 NNTLL---AGH----------------VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263
            + +L    GH                +++  Y      + I +   +GS S IG GS+V
Sbjct: 137 RDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV 196

Query: 264 SQDVPKYSMVAG 275
           ++DVP     AG
Sbjct: 197 TKDVPSMCAAAG 208

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 25/214 (11%), Positives = 56/214 (26%), Gaps = 52/214 (24%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
            +    +I+        G             +  D   ++ S H+           +   
Sbjct: 226 HYSFDKAILDKYISQEAGSCPTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGY 285

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           AV    + G TV G N ++                        + N         + + S
Sbjct: 286 AV----IKGDTVIGENVLVSQ-------------------RAYLDN-------AWMGKGS 315

Query: 190 KSGDRTVIGD----NNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI 245
            + +   I +     N +        +  +G+      N+ L G            + + 
Sbjct: 316 NAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSES---------SPL- 365

Query: 246 HQFCHIGSHSFIGGGSVVSQ----DVPKYSMVAG 275
                IG    +   +++      ++P   +V G
Sbjct: 366 ----KIGDGCVVMPHTIIDLEEPLEIPAGHLVWG 395

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} Length = 496

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 57  VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFG 116
           V  +  E        +  +  +   A    G SV  +  I     +G+  L+   +++  
Sbjct: 249 VLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-D 307

Query: 117 NTELGDHCILMTGAVVGDDLPGQTV-FG-----CNNIIGHHAVVG 155
           N  +G          + +    +           N  +G     G
Sbjct: 308 NAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDMIFTG 352

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} Length = 188

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 23/112 (20%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           G+      + + +  C I    +IG+  + A N  +  A H                V +
Sbjct: 80  GENFFANYDCIFLDVCKI----EIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKI 135

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA-VLRGLN 284
            D     G ++I     IG +  IG GSVV++D+P  ++  G    V++ + 
Sbjct: 136 GDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVIKKIE 187

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A Length = 173

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 56/193 (29%)

Query: 97  GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV 156
               K+     +     I G+  +G+   +    V+                        
Sbjct: 10  EKKPKIASSAFIADYVTITGDVYVGEESSIWFNTVI------------------------ 45

Query: 157 KCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG 216
                    GD     +G+    ++  ++H+S +     ++ D+  + G   I H C I 
Sbjct: 46  --------RGDVSPTIIGDRVNVQDQCTLHQSPQYP--LILEDDVTV-GHQVILHSCHIK 94

Query: 217 NYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVA 274
                  + L+             G+I++     IG  +FIG GS+VSQ   +P  ++  
Sbjct: 95  K------DALIG-----------MGSIILDG-AEIGEGAFIGAGSLVSQGKKIPPNTLAF 136

Query: 275 GERA-VLRGLNLE 286
           G  A V+R L  E
Sbjct: 137 GRPAKVIRELTAE 149

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* Length = 203

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 23/112 (20%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           G       N  I+    +     IG+  + A N  L   GH                + +
Sbjct: 79  GRNFYANFNLTIVDDYTV----TIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITI 134

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA-VLRGLN 284
            +       +VI+    IG +S IG GS+V++D+P   + AG    V+R +N
Sbjct: 135 GNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREIN 186

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* Length = 199

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 23/114 (20%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           G    +  N   M    I     IG+      N     A H                + +
Sbjct: 78  GKNVYVNTNCYFMDGGQI----TIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHI 133

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA-VLRGLNLE 286
              T   G + +     IG  S IG GSVV++D+P +S+  G    V+R ++ +
Sbjct: 134 GSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDND 187

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 Length = 182

 Score = 41.7 bits (99), Expect = 7e-05
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 22/102 (21%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           G+      + +++  C I    +IG+  + A    +  A H                V +
Sbjct: 76  GNNFFANFDCVMLDVCPI----RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTI 131

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
            +     G  VI+    IG +  +  G+VV++DVP   +V G
Sbjct: 132 GNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGG 173

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} Length = 191

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 58/200 (29%)

Query: 97  GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV 156
           G +  +     +  ++ I G+  +G +  +  G V+                        
Sbjct: 31  GVSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVL------------------------ 66

Query: 157 KCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG 216
                    GD   ++VG     +++  +H +      TVIG    I G   I H C +G
Sbjct: 67  --------RGDVDKIEVGEGTNIQDNTVVH-TDSMHGDTVIGKFVTI-GHSCILHACTLG 116

Query: 217 NYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVA 274
           N           G           G+IV+ +   +   S +  GS++++   V    + A
Sbjct: 117 NN-------AFVG----------MGSIVMDR-AVMEEGSMLAAGSLLTRGKIVKSGELWA 158

Query: 275 GERA-VLRGLN---LEGLRR 290
           G  A  LR +    +  L++
Sbjct: 159 GRPAKFLRMMTEEEILYLQK 178

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} PDB: 3ect_A* Length = 195

 Score = 41.7 bits (99), Expect = 8e-05
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 23/112 (20%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           GD T I  N +++    I     IG++ +   +T    A H                +V+
Sbjct: 80  GDHTFINMNVVMLDGAPI----TIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVI 135

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA-VLRGLN 284
           ED     G +VI+Q   IG+ S +   SVV+QDVP  ++V G  A +LR L 
Sbjct: 136 EDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLK 187

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} Length = 189

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 38/205 (18%), Positives = 65/205 (31%), Gaps = 62/205 (30%)

Query: 97  GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV 156
           G + KLG+   +  SS I G+ ELGD C +   AV+                        
Sbjct: 17  GISPKLGERVFVDRSSVIIGDVELGDDCSVWPLAVI------------------------ 52

Query: 157 KCQDMKYKSGDECFVDVGNNNEFREHVSIH-----RSSKSGDRTVIGDNNLIMGSCHIAH 211
                    GD   + +G     ++   +H       +  G   +IGD+  I G   + H
Sbjct: 53  --------RGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTI-GHQAMLH 103

Query: 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPK 269
            C IGN        +L G            ++++     +     +  G+ VS    +  
Sbjct: 104 GCTIGNR-------VLIG----------MKSMIMDG-AIVEDEVIVAAGATVSPGKVLES 145

Query: 270 YSMVAGERA-VLRGLN---LEGLRR 290
             +  G  A  +R +          
Sbjct: 146 GFVYMGTPAKKVRPITEKERSFFTY 170

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} Length = 187

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 62/205 (30%)

Query: 97  GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV 156
                +G   ++  SS + G+  L D   +    V+                        
Sbjct: 13  NLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVVI------------------------ 48

Query: 157 KCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKS-----GDRTVIGDNNLIMGSCHIAH 211
                    GD  +V +G     ++   +H + KS     G+  +IG++  + G   + H
Sbjct: 49  --------RGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTV-GHKVMLH 99

Query: 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPK 269
            C IGN        L+             G+IV+     I     IG GS+V Q   +  
Sbjct: 100 GCTIGN------RVLVG-----------MGSIVLDG-AIIEDDVMIGAGSLVPQHKRLES 141

Query: 270 YSMVAGERA-VLRGLN---LEGLRR 290
             +  G     +R L+     GL+ 
Sbjct: 142 GYLYLGSPVKQIRPLSDAERSGLQY 166

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A Length = 185

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 22/102 (21%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           G+   +  + +I+  C +    +IG++        +  A H                VV+
Sbjct: 78  GENFFMNFDGVILDVCEV----RIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVI 133

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
                  G  VI+    IG ++ I  G+VV++DVP  ++V G
Sbjct: 134 GHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGG 175

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} PDB: 3igj_A* Length = 190

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 23/112 (20%)

Query: 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL--AGH----------------VVV 233
           G       N +I+  C +    +IG++ +FA    +  A H                V +
Sbjct: 82  GKSFFANFNCVILDVCEV----RIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKI 137

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA-VLRGLN 284
            +     G  +I+    IG ++ I  G+VV++DVP   +V G  A V++ + 
Sbjct: 138 GNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTIE 189

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A Length = 247

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 57/179 (31%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFC----------TIGSAAKLGDGCLLYPSSHI-FG 116
            +++I P + V     IG  V V P             +G  + + DG +L    H    
Sbjct: 64  PTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVL----HALET 119

Query: 117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNN 176
             E G+        V G +       G N  + H + V                      
Sbjct: 120 INEEGEPIEDNIVEVDGKEYA--VYIGNNVSLAHQSQVHGPA------------------ 159

Query: 177 NEFREHVSIHRSSKSGDRTVIGDNNLI-MGSCHIAHDCKIGNYNIFANNTLLAGHVVVE 234
                               +GD+  I M +       K+GN  +    +   G  + +
Sbjct: 160 -------------------AVGDDTFIGMQA--FVFKSKVGNNCVLEPRSAAIGVTIPD 197

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 53/363 (14%), Positives = 93/363 (25%), Gaps = 135/363 (37%)

Query: 5   LRAWLLAVAGQNRPEQNTAESGM-----SFLLLKVRRP------------------CLSS 41
           LR  LL    + RP +N    G+     +++ L V                     C S 
Sbjct: 140 LRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 42  LSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIV------------HPNA-IIGQGV 88
                L  L   L  +  +    S  SS+       +            + N  ++   V
Sbjct: 196 --ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 89  S----VGPF---CTI-------GSAAKLGDGCLLYPS----SHIFGNTELGDHCILMTGA 130
                   F   C I            L      + S    S      E+    +     
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 131 VVGDDLPGQTVFGCNNIIGHHAVVGVKCQDM-------KYKSGD------ECFVDVGNNN 177
               DLP +            +++    +D        K+ + D      E  ++V    
Sbjct: 314 RP-QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 178 E----------FREHVSI------------------------HRSS---KSGDRTVIGDN 200
           E          F     I                        H+ S   K    + I   
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 201 NLIMG-SCHIA-----HDCKIGNYNI---FANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251
           ++ +     +      H   + +YNI   F ++ L+  ++  + Y           + HI
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL--DQYF----------YSHI 477

Query: 252 GSH 254
           G H
Sbjct: 478 GHH 480

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A Length = 213

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 38/148 (25%)

Query: 68  SSSFIHPTSIVHPNAIIGQGVSVGPFC----------TIGSAAKLGDGCLLYPSSHIFGN 117
            ++++H  S +  +  I   V + P             IGS   + DG ++         
Sbjct: 44  PTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVI--------- 94

Query: 118 TELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNN 177
                H +     +  D        G N  I H A++           GD CF+      
Sbjct: 95  -----HGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPA-----YIGDGCFIGFR--- 141

Query: 178 EFREHVSIHRSSKSGDRTVIGDNNLIMG 205
                 S   +++ G   V+  + LI  
Sbjct: 142 ------STVFNARVGAGCVVMMHVLIQD 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	300
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	100.0
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	100.0
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	100.0
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	100.0
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	100.0
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	100.0
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	100.0
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	100.0
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	100.0
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.96
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.96
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.95
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.95
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.95
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.95
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.95
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.94
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.94
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.93
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.93
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.93
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.92
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.92
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.91
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.91
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.89
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.88
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.87
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.87
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.86
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.86
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.85
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.85
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.85
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.85
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.85
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.84
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.84
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.84
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.84
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.84
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.83
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.83
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.83
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.82
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.82
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.82
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.82
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.82
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.81
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.8
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.8
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.8
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.79
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.79
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.77
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.77
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.76
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.76
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.76
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.76
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.75
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.75
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.74
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.74
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.74
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.73
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.73
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.72
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.71
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.7
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.69
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.69
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.68
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.68
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.68
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.67
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.67
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	99.65
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.64
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.62
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.62
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.62
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.59
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.59
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.58
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.56
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.56
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.54
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.53
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.51
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.48
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.47
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.47
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.45
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.44
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.42
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.41
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.4
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.37
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.29
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.24
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.24
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.23
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.21
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.2
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.18
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.14
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	99.06
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.04
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.97
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.85
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	98.73

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=8.9e-42  Score=302.74  Aligned_cols=232  Identities=80%  Similarity=1.335  Sum_probs=218.4

Q ss_pred             CCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779           67 SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN  146 (300)
Q Consensus        67 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~  146 (300)
                      .+.+.|+|+++|++++.|++++.|+++++|++++.||+++.|++++.|.+++.||++|.|++++.|..+.++.+.||+++
T Consensus         5 ~~~~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~   84 (305)
T 3t57_A            5 DSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNN   84 (305)
T ss_dssp             ----CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSC
T ss_pred             CCCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCce
Confidence            35667888888988999999999999999999999999999999999999999999999999999987777789999999


Q ss_pred             EEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCce
Q 040779          147 IIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTL  226 (300)
Q Consensus       147 ~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~  226 (300)
                      .|++++.|+...+++.|...+...+.||+++.|++++.|++++...+.+.||++++|+.++.+.+++.||+++++++++.
T Consensus        85 ~Ig~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~  164 (305)
T 3t57_A           85 IIGHHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIFANNTL  164 (305)
T ss_dssp             EECTTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSSTTCCEEECSSCEECTTCEECTTCEECSSCEECTTCE
T ss_pred             EECCccEeCccccccceecCCCceEEECCCcccCceEEEeecccccCccEEccCccccceEEEeCceEeCCceEECCCcc
Confidence            99999999998889988888889999999999999999999988888999999999999999999999999999999999


Q ss_pred             ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       227 v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      +.++++||+++|||.++.|+++++|+++++|+++|+|++|+|++++++|+|||++++|.+.|++++|++++.
T Consensus       165 i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~dvp~~~~~~G~Pa~~~~~n~~g~~r~~~~~~~~  236 (305)
T 3t57_A          165 LAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQDVPKYMMVAGERAELRGLNLEGLRRNGFTMSEM  236 (305)
T ss_dssp             ECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEEEECHHHHHHTTCCHHHH
T ss_pred             cCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEcccCCCCeEEecCCcEEeccchhheeecCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998754

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=100.00  E-value=1.3e-35  Score=257.54  Aligned_cols=205  Identities=36%  Similarity=0.673  Sum_probs=173.6

Q ss_pred             ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779           72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH  151 (300)
Q Consensus        72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~  151 (300)
                      |||.++|++++.|++++.|+++++|++++.||++++|++++.|.++++||++|.|++++.|..                 
T Consensus         3 I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~-----------------   65 (259)
T 3hsq_A            3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGV-----------------   65 (259)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEE-----------------
T ss_pred             cCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECC-----------------
Confidence            677777777888888888888888888888888888888887777777777777777666632                 


Q ss_pred             cEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCce
Q 040779          152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHV  231 (300)
Q Consensus       152 ~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v  231 (300)
                           ..+++.|.......+.||+++.+++++.|+.++.....+.||++++++.++.+++++.||+++++++++.+.+++
T Consensus        66 -----~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v  140 (259)
T 3hsq_A           66 -----MPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGNSHVGHDCILGNNNILTHGAVLAGHV  140 (259)
T ss_dssp             -----CCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             -----CcccccccCccCCcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCCcEECCCcEECCccEEcCCceECCcc
Confidence                 233333332214457778888888888887776656789999999999999999999999999999999999999


Q ss_pred             EECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          232 VVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       232 ~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      +||+++|||++++|.++++|+++++|+++|+|++|+|+++++.|+|||++++|.+.|++++|++++.
T Consensus       141 ~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~dvp~~~~~~G~pa~~~~~~~~g~~r~~~~~~~~  207 (259)
T 3hsq_A          141 TLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQDVPPYSTVDGNPSTVVGLNSVGMKRAGFSPEVR  207 (259)
T ss_dssp             EECSSCEECSSEEECTTCEECTTCEECSSEEECSBBCTTEEEETTTTEEEEECHHHHHHTTCCHHHH
T ss_pred             EECCCcEEeCCCEECCCCEECCCCEECCCCEEcccCCCCcEEeccCcEEEeecccceeeCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998753

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=100.00  E-value=2.3e-35  Score=256.72  Aligned_cols=212  Identities=43%  Similarity=0.764  Sum_probs=178.3

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG  143 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig  143 (300)
                      +.++.++.|+|+++|.+++.|++++.|+++++|++++.||+++.|++++.|.+++.||++|.|++++.|+.         
T Consensus         2 a~ig~~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~---------   72 (265)
T 4e6u_A            2 AGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGE---------   72 (265)
T ss_dssp             ------CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEE---------
T ss_pred             CCcCCCCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECC---------
Confidence            34678888999999999999999999999999998899998888888888887788888887777777743         


Q ss_pred             cceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEc
Q 040779          144 CNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFA  222 (300)
Q Consensus       144 ~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~  222 (300)
                                   ..+++.|. .+...+.||+++.+++++.|..++... ..+.||++++++.++.+.+++.||++++++
T Consensus        73 -------------~~~~~~~~-g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~  138 (265)
T 4e6u_A           73 -------------VCQDLKYK-GEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHIAHDCIVGDHNIFA  138 (265)
T ss_dssp             -------------CCCCTTCC-SCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEEC
T ss_pred             -------------cccccccc-CCCCeEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEEcccEEECCCcEEc
Confidence                         22333332 223457788888888888887655432 369999999999999999999999999999


Q ss_pred             cCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       223 ~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      .++.+.++++||+++|||++++|.++++|+++++|+++|+|++|+|+++++.|+|||+.++|.+.+++++|++++.
T Consensus       139 ~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~dvp~~~~~~G~pa~~~~~~~~g~~r~~~~~~~~  214 (265)
T 4e6u_A          139 NNVGVAGHVHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKDVPAYVMASGNPAHAFGINIEGMRRKGWSKNTI  214 (265)
T ss_dssp             TTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEEETTEEEEEECHHHHHHTTCCHHHH
T ss_pred             CCcEECCCcEECCCeEEcCCCEECCCcEECCCCEEcCCCEEcccCCCCeEEEccCCEEeccccccceecCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998753

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=100.00  E-value=5.6e-35  Score=254.30  Aligned_cols=205  Identities=40%  Similarity=0.692  Sum_probs=171.8

Q ss_pred             eECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779           71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH  150 (300)
Q Consensus        71 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~  150 (300)
                      .|||.++|++++.|++++.|+++++|++++.||++++|++++.|.++++||++|.|++++.|+.                
T Consensus         6 ~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~----------------   69 (266)
T 3r0s_A            6 KIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGD----------------   69 (266)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEE----------------
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceecc----------------
Confidence            4778888888888888888888888888888888888888888887888888888877777753                


Q ss_pred             ccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecC
Q 040779          151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG  229 (300)
Q Consensus       151 ~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~  229 (300)
                            .++++.|.......+.||+++.|++++.|+.+.... ..++||++++|+.++.+.+++.||+++++++++.+.+
T Consensus        70 ------~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~  143 (266)
T 3r0s_A           70 ------IPQDISYKEEQKSGVVIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAG  143 (266)
T ss_dssp             ------CCSCSCCC----CEEEECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECT
T ss_pred             ------CCccccccCCcCceEEECCCCEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecC
Confidence                  222333332222457777777777777777655332 3499999999999999999999999999999999999


Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      +++||+++|||++++|.++++|+++++|+++++|++|+|++++++|+|||++++|.+.++++ |++++.
T Consensus       144 ~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~dvp~~~~~~G~Pa~~~~~n~~g~~r~-~~~~~~  211 (266)
T 3r0s_A          144 HVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRR-FDKDEV  211 (266)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSCBCTTEEEEEBTEEEEEECHHHHHHH-SCHHHH
T ss_pred             CeEECCCcEEccCCEECCCcEECCCCEEccCCeEecccCCCeEEeccCcEEeecchhheeec-CCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 987653

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=100.00  E-value=1.4e-34  Score=252.97  Aligned_cols=204  Identities=22%  Similarity=0.314  Sum_probs=174.8

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCC--------------cEECCCcEEccC
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGN--------------TELGDHCILMTG  129 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~--------------~~IG~~~~I~~~  129 (300)
                      ++|++++.|+|+++|++++.|++++.|++++.|++++.||+++.|++++.|++.              +.||++|.|+++
T Consensus         3 ~~i~~~~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~   82 (273)
T 3fs8_A            3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTE   82 (273)
T ss_dssp             CEECTTCEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTT
T ss_pred             cccCCCeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCC
Confidence            457788899999999999999999999999999999999999999999999876              899999999999


Q ss_pred             cEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE
Q 040779          130 AVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI  209 (300)
Q Consensus       130 ~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i  209 (300)
                      +.|..    .+.||+++.+++++.|+.             ...||+++.++.++.+      .+++.||+++.|+.++.|
T Consensus        83 ~~i~~----~~~Ig~~~~Ig~~~~I~~-------------~~~Ig~~~~Ig~~~~i------~~~~~IG~~~~I~~~~~I  139 (273)
T 3fs8_A           83 NVIYG----DTIIGDNFQTGHKVTIRE-------------NTKIGNNVKIGTLSDI------QHHVYIGNYVNIHSNVFV  139 (273)
T ss_dssp             CEEES----SCEECTTCEECSSCEECS-------------SCEECSSCEECTTCEE------CSSCEECSSCEECTTCEE
T ss_pred             CEEeC----CCEECCCCEECCceEECC-------------CCEECCCCEECcccee------CCceEECCceEECCCCEE
Confidence            99965    388999999988887732             2456666666655555      567888888888888888


Q ss_pred             CcCcEeCCccEEccCceecC----------ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE
Q 040779          210 AHDCKIGNYNIFANNTLLAG----------HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV  279 (300)
Q Consensus       210 ~~~v~Ig~~~~i~~~~~v~~----------~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~  279 (300)
                      ++++.+++++.+.+++.+..          +++||+++|||.+++|+++++|+++++|+++|+|++|+|++++++|+|||
T Consensus       140 ~~~~~ig~~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~dvp~~~~~~G~PA~  219 (273)
T 3fs8_A          140 GEKSIIKDFVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKDVPKETVVVGNPAR  219 (273)
T ss_dssp             CTTCEECTTCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEE
T ss_pred             CCCceeCCceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECccCCCCcEEEecCcE
Confidence            88888888888888887776          79999999999999999999999999999999999999999999999999


Q ss_pred             -EEecChhhhhh
Q 040779          280 -LRGLNLEGLRR  290 (300)
Q Consensus       280 -~~~~~~~~~~~  290 (300)
                       ++.++...+++
T Consensus       220 ~i~~~~~~~~~~  231 (273)
T 3fs8_A          220 EICSIRKIKNKI  231 (273)
T ss_dssp             EEEEGGGCBCTT
T ss_pred             Eecccchhhhhh
Confidence             56577666555

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=100.00  E-value=9.6e-35  Score=255.04  Aligned_cols=209  Identities=38%  Similarity=0.674  Sum_probs=177.7

Q ss_pred             CCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779           67 SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN  146 (300)
Q Consensus        67 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~  146 (300)
                      +..+.|+|++.|.+++.|++++.|+++++|++++.||+++.|++++.|.+++.||++|.|++++.|..            
T Consensus        20 ~~~~~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~------------   87 (283)
T 4eqy_A           20 GSMSRIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGG------------   87 (283)
T ss_dssp             ---CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEE------------
T ss_pred             CCCcccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECC------------
Confidence            35667888888888889999999999999998889999888888888887788888888877777743            


Q ss_pred             EEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCC-ceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779          147 IIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT  225 (300)
Q Consensus       147 ~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~-~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~  225 (300)
                                ..+++.|. .+...+.||+++.|++++.|+.++.... .+.||++++|+.++.+.+++.||++++++.++
T Consensus        88 ----------~~~~~~~~-g~~~~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~  156 (283)
T 4eqy_A           88 ----------RPQDMKYK-DEPTRLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNA  156 (283)
T ss_dssp             ----------CCCCTTCC-CCCCEEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTC
T ss_pred             ----------CCcccccc-CCCceEEECCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCc
Confidence                      22233332 2234578888888888888876654333 49999999999999999999999999999999


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      .+.++++||+++|||++++|.++++|+++++|+++++|++|+|+++++.|+|||+.++|.+++++++|++++.
T Consensus       157 ~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~dvp~~~~~~G~pa~~~~~n~~gl~r~~~~~~~~  229 (283)
T 4eqy_A          157 QMAGHVEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQDIPPFVIAAGNKAEPHGINVEGLRRRGFSPDAI  229 (283)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETBTTEEEEECHHHHHHTTCCHHHH
T ss_pred             eEcCCcEECCCeEEecCCEEcCCeEECCCcEECCCCeEecccCCCcEEeccCcEEeecccccceecCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998753

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=100.00  E-value=1.6e-34  Score=251.14  Aligned_cols=210  Identities=43%  Similarity=0.778  Sum_probs=179.5

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |++++.|+|.++|++++.|++++.|++++.|++++.||+++.|++++.|.+++.||++|.|++++.|...          
T Consensus         2 I~~~~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~----------   71 (262)
T 2qia_A            2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEV----------   71 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEEC----------
T ss_pred             cCCCCeECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcC----------
Confidence            5577888888888888888899999999999888888888888888888888888888888887777541          


Q ss_pred             eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccC
Q 040779          146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANN  224 (300)
Q Consensus       146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~  224 (300)
                                  .+++.+. .+...+.||+++.+++++.|..++... ..+.||++++|+.++.+.+++.||++++++++
T Consensus        72 ------------~~~~~~~-g~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~  138 (262)
T 2qia_A           72 ------------NQDLKYA-GEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANN  138 (262)
T ss_dssp             ------------CSCTTCC-SCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred             ------------Ccccccc-CCccceEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCc
Confidence                        1122221 223456788888888888887665433 46999999999999999999999999999999


Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      +.+.++++||+++|||++++|.++++|+++++|+++|+|++|+|++++++|+|||+.++|.+++++++|++++.
T Consensus       139 ~~i~~~v~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~  212 (262)
T 2qia_A          139 ATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAI  212 (262)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEEEEECHHHHHHTTCCHHHH
T ss_pred             ccccCCcEECCCcEEccCCEECCCCEECCCCEEccCCEECCcCCCCeEEeccCceEecccccccEecCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998754

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=100.00  E-value=5e-34  Score=256.64  Aligned_cols=229  Identities=23%  Similarity=0.353  Sum_probs=156.7

Q ss_pred             hhhhccchhhHHHHHHHHHhhccc------CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEEC
Q 040779           30 LLLKVRRPCLSSLSTLFLRRLSTA------LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLG  103 (300)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  103 (300)
                      +....|+..|..+.    ++|.+.      +++.+.|++++.+++++.|+++++|++++.||++++|+++++|++++.||
T Consensus        74 ~~~~~p~~~~~~~~----~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG  149 (341)
T 3eh0_A           74 LVVKNPYLTYARMA----QILDTTPQPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIG  149 (341)
T ss_dssp             EECSCHHHHHHHHH----HHHCCCCCSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEeCCHHHHHHHHH----HHhcccCCccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEEC
Confidence            33445555555544    334332      33344444444444444444444444444445555555555554455555


Q ss_pred             CCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCe
Q 040779          104 DGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV  183 (300)
Q Consensus       104 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~  183 (300)
                      ++|.|++++.|++++.||++|.|+++++|..+.+++..-                .....+......+.||+++.|+.++
T Consensus       150 ~~~~I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~----------------~~~~~~i~~~g~v~IGd~v~Ig~~~  213 (341)
T 3eh0_A          150 AGSRLWANVTIYHEIQIGQNCLIQSGTVVGADGFGYAND----------------RGNWVKIPQIGRVIIGDRVEIGACT  213 (341)
T ss_dssp             TTCEECSSCEECTTCEECSSCEECTTCEEEECCSCEEEE----------------TTEEEECCCCCCEEECSSCEECTTC
T ss_pred             CCcEECCCcEECCCCEECCccEEcCCcEECCcccccccc----------------CCccccccccCcEEECCCcEECCcc
Confidence            555555555554445555555555554444322111110                0001122334568999999999999


Q ss_pred             EEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       184 ~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      .|.++.  .+++.||+++.|+.++.+++++.||++++++.++.+.++++||++||||++++|.++++|+++++|+++++|
T Consensus       214 ~I~~~~--~~~~~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V  291 (341)
T 3eh0_A          214 TIDRGA--LDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMV  291 (341)
T ss_dssp             EEECCS--SSCEEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEE
T ss_pred             Eeeccc--cCceEeccceEECCCCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEE
Confidence            998765  478999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CCcEEeeeceEE
Q 040779          264 SQDVP-KYSMVAGERAVL  280 (300)
Q Consensus       264 ~~~v~-~~~~~~G~Pa~~  280 (300)
                      ++|+| +++++.|+||+.
T Consensus       292 ~~~v~~~~~~~~G~Pa~~  309 (341)
T 3eh0_A          292 MRPITEPGVYSSGIPLQP  309 (341)
T ss_dssp             CSCBCSCEEEECCCCCEE
T ss_pred             CCCcCCCCeEEEecCchh
Confidence            99998 899999999985

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=100.00  E-value=3.3e-34  Score=249.77  Aligned_cols=203  Identities=39%  Similarity=0.679  Sum_probs=173.8

Q ss_pred             ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779           72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH  151 (300)
Q Consensus        72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~  151 (300)
                      |+|.++|.+++.|++++.|+++|.|++++.||++++|++++.|.+++.||++|.|++++.|..                 
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~-----------------   66 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGT-----------------   66 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESC-----------------
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECc-----------------
Confidence            778888888888888888888888888888888888888888887788888887777777753                 


Q ss_pred             cEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779          152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH  230 (300)
Q Consensus       152 ~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~  230 (300)
                           ..+++.|. .+...+.||+++.+++++.|+.++... ..+.||++++++.++.+.+++.||+++++++++.+.++
T Consensus        67 -----~~~~~~~~-g~~~~~~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~  140 (270)
T 1j2z_A           67 -----QPQDLKYK-GEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGH  140 (270)
T ss_dssp             -----CCSCSSCC-SCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT
T ss_pred             -----CCcccccc-CCccceEECCCCEECCCeEEcCCeecCCccEEECCCcEECcccccCCCcEECCCcEEcCCccccCc
Confidence                 12233322 223457888888888888887766544 37999999999999999999999999999999999999


Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      ++||++++||++++|.++++|+++++|+++|+|++|+|+++++.|+||+..++|.+++ +++|++++.
T Consensus       141 v~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~dvp~~~~~~G~pa~~~~~n~~g~-r~~~~~~~~  207 (270)
T 1j2z_A          141 IEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRM-RQLLESKDI  207 (270)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEEEECHHHH-HHHSCHHHH
T ss_pred             cEECCCeEEecCCEECCCcEeCCceEEecCcEecccCCCCeEEecCCcEEecccchhh-hcCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999 999987653

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=100.00  E-value=1.3e-33  Score=255.02  Aligned_cols=203  Identities=22%  Similarity=0.322  Sum_probs=143.9

Q ss_pred             ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779           72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH  151 (300)
Q Consensus        72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~  151 (300)
                      |+|.++|++++.|++++.|+++++|++++.||++++|++++.|++++.||++|.|++++.|+.    .++||++|.|+++
T Consensus       105 i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~----~~~IG~~~~I~~g  180 (357)
T 4e79_A          105 IESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITG----SSKLRDRVRIHSS  180 (357)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECT----TCEECSSCEECTT
T ss_pred             eCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEec----ccEEEeEeeccCC
Confidence            333334444444444444444444444444444444444444444444444444444444433    2444555555555


Q ss_pred             cEEeeeecCc------ccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779          152 AVVGVKCQDM------KYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT  225 (300)
Q Consensus       152 ~~i~~~~~~~------~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~  225 (300)
                      +.++.....+      ..+....+.++||+++.|++++.|.+++  .+.+.||+++.|+.++.|++++.||++++++.++
T Consensus       181 ~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g~--~~~t~Ig~~~~I~~~v~I~~~v~IG~~~~i~~~~  258 (357)
T 4e79_A          181 TVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRGA--LDNTILEDGVIIDNLVQIAHNVHIGSNTAIAAKC  258 (357)
T ss_dssp             CEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCCS--SSCEEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             eEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEeccc--cCCccccCCcccCCCcccCCCeEECCCCEECCCC
Confidence            5543221111      1122334468999999999999998766  3789999999999999999999999999999999


Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC-CCCcEEeeeceEE
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV-PKYSMVAGERAVL  280 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v-~~~~~~~G~Pa~~  280 (300)
                      .+.++++||++||||++++|.++++|+++++|+++++|++|+ |+++++.|.||+.
T Consensus       259 ~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~~v~~~~~~~~G~Pa~~  314 (357)
T 4e79_A          259 GIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTKNISEAGTYSSGTGLFE  314 (357)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEEECSCCCEE
T ss_pred             EECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEEcCccCCCCcEEEeCchHH
Confidence            999999999999999999999999999999999999999999 9999999999984

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=7.2e-33  Score=251.24  Aligned_cols=204  Identities=23%  Similarity=0.305  Sum_probs=149.0

Q ss_pred             eECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779           71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH  150 (300)
Q Consensus        71 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~  150 (300)
                      .|+|.++|.+++.|+++++|+++++|++++.||++++|++++.|++++.||++|.|++++.|..    .++||++|.|++
T Consensus       121 ~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~----~~~IG~~v~I~~  196 (372)
T 3pmo_A          121 GIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYH----DVTIGARVSIQS  196 (372)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT----TEEECTTCEECT
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEe----eeEECceeeccC
Confidence            3444444444444444444444455544555555555555555555555555555555555544    255555555555


Q ss_pred             ccEEeeeecCcc------cccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccC
Q 040779          151 HAVVGVKCQDMK------YKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANN  224 (300)
Q Consensus       151 ~~~i~~~~~~~~------~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~  224 (300)
                      ++.|+.....+.      .+......++||+++.|++++.|.++.  ...+.||+++.|+.++.|.+++.||++++++.+
T Consensus       197 g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g~--~~~t~IG~~~~I~~~v~I~~~v~IG~~~~I~~~  274 (372)
T 3pmo_A          197 GAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGA--LSDTLIGNGVKLDNQIMIAHNVQIGDHTAMAAC  274 (372)
T ss_dssp             TCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECCS--SSCEEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             CcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccCc--ccceEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            555543221111      122234468999999999999998765  478999999999999999999999999999999


Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC-CCCcEEeeeceEE
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV-PKYSMVAGERAVL  280 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v-~~~~~~~G~Pa~~  280 (300)
                      +.+.++++||++||||++++|.++++|+++++|+++++|++|+ |+++++.|+||+.
T Consensus       275 ~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k~v~~~~~~~~G~Pa~~  331 (372)
T 3pmo_A          275 VGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTRSITEPGSYSSGTAMQP  331 (372)
T ss_dssp             CEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEECSCBCSCEEECCSCCCCC
T ss_pred             CEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEEccCcCCCCcEEEeCchHH
Confidence            9999999999999999999999999999999999999999999 9999999999983

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=100.00  E-value=3.4e-31  Score=241.19  Aligned_cols=204  Identities=22%  Similarity=0.323  Sum_probs=166.9

Q ss_pred             eECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779           71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH  150 (300)
Q Consensus        71 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~  150 (300)
                      .|+|.++|.+++.|++++.|++++.|++++.||+++.|++++.|++++.||++|.|++++.|..    .++||+++.|++
T Consensus       126 ~i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~----~~~IG~~~~I~~  201 (374)
T 2iu8_A          126 GIHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRE----RVSIGKRVIIQP  201 (374)
T ss_dssp             SBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS----SEEECTTCEECT
T ss_pred             ccCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcc----cceECCCCEECC
Confidence            4556666666667777777777777777777777777777777777777777777777777754    377777777777


Q ss_pred             ccEEeeeecCc-------ccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEcc
Q 040779          151 HAVVGVKCQDM-------KYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN  223 (300)
Q Consensus       151 ~~~i~~~~~~~-------~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~  223 (300)
                      ++.|+.....+       .........++||+++.|+++++|.++.  ...+.||+++.|...+.|++++.||+++++.+
T Consensus       202 ~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~--~~~t~ig~~~~i~~~v~I~~~v~IG~~~~i~~  279 (374)
T 2iu8_A          202 GAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGR--FKHSVVREGSKIDNLVQIAHQVEVGQHSMIVA  279 (374)
T ss_dssp             TCEEEEECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECS--SSCEEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             CCEECcCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCc--ccceeECCCcEECCccccCCccEECCCCEEcc
Confidence            77776542111       1122333468999999999999998876  35799999999999999999999999999999


Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      ++.+.++++||++|+||+++.|.++++|+++++|+++|+|++|+|+++++.|+||+.
T Consensus       280 ~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~v~~~~~~~G~pa~~  336 (374)
T 2iu8_A          280 QAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKSITSPGIYGGAPARP  336 (374)
T ss_dssp             TCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSCBCSCEEEEETTEEE
T ss_pred             CcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecccCCCcEEeCCCCch
Confidence            999999999999999999999999999999999999999999999999999999984

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.96  E-value=1.2e-28  Score=230.28  Aligned_cols=186  Identities=16%  Similarity=0.239  Sum_probs=146.2

Q ss_pred             cceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccC
Q 040779           56 HVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDD  135 (300)
Q Consensus        56 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~  135 (300)
                      ....+++.+++++++.|++++.|.+++.||+++.|++++.|. ++.||+++.|++++.|. ++.||++|.|++++.|.. 
T Consensus       261 ~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~~~Ig~~~~ig~~~~i~~-  337 (459)
T 4fce_A          261 SRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLE-DARLDANCTVGPFARLRP-  337 (459)
T ss_dssp             GGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEE-SCEECTTCEECSSEEECT-
T ss_pred             CeEEEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEe-CCEECCCCEECCccEECC-
Confidence            345677888999999999999998899999999999999998 69999999999999996 789999999999999874 


Q ss_pred             CCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEe
Q 040779          136 LPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKI  215 (300)
Q Consensus       136 ~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~I  215 (300)
                         .+.||+++.|++++.+..              ..|++++.++..+.                  ++ .+.|++++.|
T Consensus       338 ---~~~ig~~~~Ig~~~~i~~--------------~~i~~~~~i~~~~~------------------i~-~~~Ig~~~~i  381 (459)
T 4fce_A          338 ---GAELAEGAHVGNFVEIKK--------------ARLGKGSKAGHLSY------------------LG-DAEIGAGVNI  381 (459)
T ss_dssp             ---TCEECTTCEEEEEEEEEE--------------EEECTTCEEEEEEE------------------EE-EEEECTTCEE
T ss_pred             ---CcEECCCcEECCCeEEee--------------eEEcCCCEECCceE------------------EC-CeEECCCCEE
Confidence               378888888888877731              23333333322222                  21 2344455555


Q ss_pred             CCccEEccCceecC-ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          216 GNYNIFANNTLLAG-HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       216 g~~~~i~~~~~v~~-~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      |.++.+.....+.+ +++||++||||++++|.++++||++++||++|+|++|+|++++++|+||+.
T Consensus       382 g~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~v~~~~~~~G~p~~~  447 (459)
T 4fce_A          382 GAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVANGATIGAGTTVTRDVAENELVISRVKQV  447 (459)
T ss_dssp             CTTCEEECBCSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCCC
T ss_pred             CCCCEEeccccccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEccccCCCCEEEeccccc
Confidence            55555444444333 799999999999999999999999999999999999999999999999963

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.96  E-value=1.4e-28  Score=229.58  Aligned_cols=186  Identities=15%  Similarity=0.236  Sum_probs=134.6

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      .+.+++.+.+++++.|+++++|.+++.||+++.|++++.|. ++.||+++.|++++.|. ++.||+++.|++++.|..  
T Consensus       259 ~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~--  334 (456)
T 2v0h_A          259 RFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLE-DSIVGEKAAIGPFSRLRP--  334 (456)
T ss_dssp             GEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEE-EEEECTTCEECSSEEECT--
T ss_pred             ccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEc-cCcCCCCcEECCccEECC--
Confidence            46677778888888888888888888888888888888887 78888888888888886 678888888888888764  


Q ss_pred             CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeC
Q 040779          137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG  216 (300)
Q Consensus       137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig  216 (300)
                        .+.||+++.|++++.+..              ..|++++.+...+.+       .+            +.|+++++||
T Consensus       335 --~~~ig~~~~ig~~~~i~~--------------~~i~~~~~i~~~~~~-------~~------------~~Ig~~v~Ig  379 (456)
T 2v0h_A          335 --GAELAAETHVGNFVEIKK--------------STVGKGSKVNHLTYV-------GD------------SEIGSNCNIG  379 (456)
T ss_dssp             --TCEECTTCEEEEEEEEES--------------CEECTTCEEEEEEEE-------ES------------EEECTTCEEC
T ss_pred             --CCEECCCCEECCCCEEec--------------cEECCCCEeccceee-------cC------------cEECCCcEEC
Confidence              367777777777776621              122222222221111       12            2333333333


Q ss_pred             CccEEccCc-eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          217 NYNIFANNT-LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       217 ~~~~i~~~~-~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      .++.+.... ...++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+|||..
T Consensus       380 ~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~s~v~~~v~~~~~~~G~pa~~~  445 (456)
T 2v0h_A          380 AGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRDVGENELVITRVAQRH  445 (456)
T ss_dssp             TTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTTCEECSCBCTTCEECCCCCCCC
T ss_pred             CceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCCCEECCCcCCCCEEEccCceeh
Confidence            333332221 12338999999999999999999999999999999999999999999999999854

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.95  E-value=6.5e-27  Score=219.18  Aligned_cols=184  Identities=17%  Similarity=0.226  Sum_probs=136.7

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      .+.+++.+.|++++.|++++.|.+++.||++|.|++++.|+ ++.||++|.|+ ++.|. ++.||++|.|++++.|..  
T Consensus       268 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~ig~~~~i~-~~~i~-~~~Ig~~~~Ig~~~~i~~--  342 (468)
T 1hm9_A          268 ATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVV-DSTIGAGAVIT-NSMIE-ESSVADGVTVGPYAHIRP--  342 (468)
T ss_dssp             GCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEE-SCEECTTCEEC-SCEEE-SCEECTTCEECSSCEECS--
T ss_pred             eeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEe-ccEEeCCcEEE-EEEEe-ccccCCCcEECCceEEec--
Confidence            45678888888888888888888888888888888888887 78888888888 88888 688888888888888874  


Q ss_pred             CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeC
Q 040779          137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG  216 (300)
Q Consensus       137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig  216 (300)
                        .+.||+++.|++++.+..              ..||+++.++..+.+.       ++            .|++++.||
T Consensus       343 --~~~ig~~~~Ig~~~~i~~--------------~~Ig~~~~i~~~~~i~-------~~------------~Ig~~~~Ig  387 (468)
T 1hm9_A          343 --NSSLGAQVHIGNFVEVKG--------------SSIGENTKAGHLTYIG-------NC------------EVGSNVNFG  387 (468)
T ss_dssp             --SCEECTTCEEEEEEEEES--------------CEECTTCEEEEEEEEE-------SE------------EECTTCEEC
T ss_pred             --CcEECCccEECCCcEEee--------------eEEcCCcEeCCceEEc-------cc------------cccCCcEEC
Confidence              377777777777776621              2333333333222221       22            223333333


Q ss_pred             CccEEccCcee-cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          217 NYNIFANNTLL-AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       217 ~~~~i~~~~~v-~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      .++++.....+ .++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+||++
T Consensus       388 ~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~~v~~~~~~~G~pa~~  452 (468)
T 1hm9_A          388 AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQI  452 (468)
T ss_dssp             TTCEEECBCSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCSCCCC
T ss_pred             CCcEEecCcCccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEcCccee
Confidence            33333221111 23799999999999999999999999999999999999999999999999974

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.95  E-value=4.3e-27  Score=212.40  Aligned_cols=211  Identities=18%  Similarity=0.321  Sum_probs=174.7

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhcc-----cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEE
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLST-----ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKL  102 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~I  102 (300)
                      .|+....|+..|..+.    +++.+     .+++.+.|++++++++++.|+++++|++++.||++++|++++.|++++.|
T Consensus        78 ~~i~~~~p~~~~~~~~----~~~~~~~~~~~i~p~a~I~~~a~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~I  153 (357)
T 4e79_A           78 NFIIVDNPYLAFAILT----HVFDKKISSTGIESTARIHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEV  153 (357)
T ss_dssp             EEEECSCHHHHHHHHH----TTSSCCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cEEEECCHHHHHHHHH----HHhccccccCeeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            4555566666666554    44433     35677788888888899999999999999999999999999999999999


Q ss_pred             CCCCEECCCcEEeCCcEECCCcEEccCcEEccCCC---------------CceeeccceEEccccEEeeeecCcccccCC
Q 040779          103 GDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLP---------------GQTVFGCNNIIGHHAVVGVKCQDMKYKSGD  167 (300)
Q Consensus       103 g~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~---------------~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~  167 (300)
                      |++|.|++++.|.++++||++|.|+++++|..+.+               +.+.||+++.|++++.|.+.         .
T Consensus       154 G~~~~I~~~~~I~~~~~IG~~~~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IG~~~~I~~g---------~  224 (357)
T 4e79_A          154 GKDCFIDSYVTITGSSKLRDRVRIHSSTVIGGEGFGFAPYQGKWHRIAQLGSVLIGNDVRIGSNCSIDRG---------A  224 (357)
T ss_dssp             CSSCEECTTCEECTTCEECSSCEECTTCEESCCCCCEEEETTEEEECCCCCCEEECTTCEECTTCEECCC---------S
T ss_pred             CCCCEECCCcEEecccEEEeEeeccCCeEECcccCcccccCCceeeccccCcEEEcCCcEEccccEEecc---------c
Confidence            99999999999999999999999999999976432               46899999999999998432         1


Q ss_pred             cceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEcc
Q 040779          168 ECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQ  247 (300)
Q Consensus       168 ~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~  247 (300)
                      ...+.||+++.+.+++.|      .+++.||++++++.++.+..++.||++++|+.++.+.+++.|++++++++++.+.+
T Consensus       225 ~~~t~Ig~~~~I~~~v~I------~~~v~IG~~~~i~~~~~i~~~v~IG~~~~Ig~~s~V~~~~~Ig~~~vv~g~s~V~~  298 (357)
T 4e79_A          225 LDNTILEDGVIIDNLVQI------AHNVHIGSNTAIAAKCGIAGSTKIGKNCILAGACGVAGHLSIADNVTLTGMSMVTK  298 (357)
T ss_dssp             SSCEEECTTCEECTTCEE------CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSEEECTTCEECS
T ss_pred             cCCccccCCcccCCCccc------CCCeEECCCCEECCCCEECCCcEECCCCEECcCCEECCCeEECCCCEEeecCEEcC
Confidence            233566666666655555      99999999999999999999999999999999999999999999999999999998


Q ss_pred             CcEE-CCCcEEcc
Q 040779          248 FCHI-GSHSFIGG  259 (300)
Q Consensus       248 ~~~I-~~~~vv~~  259 (300)
                      +  + ++++++++
T Consensus       299 ~--v~~~~~~~~G  309 (357)
T 4e79_A          299 N--ISEAGTYSSG  309 (357)
T ss_dssp             C--BCSCEEEECS
T ss_pred             c--cCCCCcEEEe
Confidence            6  5 77776644

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.95  E-value=9e-27  Score=209.32  Aligned_cols=208  Identities=26%  Similarity=0.388  Sum_probs=172.3

Q ss_pred             CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779           68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI  147 (300)
Q Consensus        68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~  147 (300)
                      ..+.|+|.++|.+++.|+++++|+++++|++++.||++|.|++++.|++++.||++|.|++++.|..    .+.||++|.
T Consensus        96 ~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~----~~~IG~~~~  171 (341)
T 3eh0_A           96 PAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH----EIQIGQNCL  171 (341)
T ss_dssp             SCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECT----TCEECSSCE
T ss_pred             ccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCcEECCCcEECC----CCEECCccE
Confidence            4567899999999999999999999999999999999999999999999999999999999999965    489999999


Q ss_pred             EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC----cCcEeCCccEEcc
Q 040779          148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA----HDCKIGNYNIFAN  223 (300)
Q Consensus       148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~----~~v~Ig~~~~i~~  223 (300)
                      |++++.++.....+...  .....            .+.    ....+.||+++.|+.++++.    +++.||+++.|..
T Consensus       172 I~~g~~I~~~~fg~~~~--~~~~~------------~i~----~~g~v~IGd~v~Ig~~~~I~~~~~~~~~Ig~~~~I~~  233 (341)
T 3eh0_A          172 IQSGTVVGADGFGYAND--RGNWV------------KIP----QIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDN  233 (341)
T ss_dssp             ECTTCEEEECCSCEEEE--TTEEE------------ECC----CCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECT
T ss_pred             EcCCcEECCcccccccc--CCccc------------ccc----ccCcEEECCCcEECCccEeeccccCceEeccceEECC
Confidence            99999997653222211  11111            111    13567888888888888886    6899999999999


Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceEEEecChhhhhhcCCCccc
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE  297 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~  297 (300)
                      ++.+.++++||++++++.++.+.++++|+++++|+++++|.+  +++++++++|.+...+.++.+.....|+++..
T Consensus       234 ~v~I~~~v~IG~~~~i~~~~~i~g~v~IG~~~~Ig~~s~V~~~v~Ig~~~vv~a~s~V~~~v~~~~~~~~G~Pa~~  309 (341)
T 3eh0_A          234 QCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGVYSSGIPLQP  309 (341)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECSSEEECTTCEECSCBCSCEEEECCCCCEE
T ss_pred             CCEEeCCcEECCCCEECCCCEECCCcEECCCcEEcCCCEECCCCEECCCCEEeeCCEECCCcCCCCeEEEecCchh
Confidence            999999999999999999999999999999999999999999  58999999998776666653443345666543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.95  E-value=8.6e-27  Score=206.42  Aligned_cols=194  Identities=17%  Similarity=0.212  Sum_probs=171.4

Q ss_pred             ccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeC----CcEECCCcEEc
Q 040779           52 TALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFG----NTELGDHCILM  127 (300)
Q Consensus        52 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~----~~~IG~~~~I~  127 (300)
                      +.+++.+.|++.++|++++.|+|+++|++++.||+++.|++++.|.+++.||++|.|++++.|..    ++.||+++.|+
T Consensus         8 ~~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig   87 (305)
T 3t57_A            8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIG   87 (305)
T ss_dssp             -CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEEC
T ss_pred             CeECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEEC
Confidence            45788999999999999999999999999999999999999999999999999999999999975    69999999999


Q ss_pred             cCcEEccC---------CCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEEC
Q 040779          128 TGAVVGDD---------LPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIG  198 (300)
Q Consensus       128 ~~~~i~~~---------~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG  198 (300)
                      +++.|..+         ....+.||+++.|++++.|.....       ....+.||+++.+++++.|      .+++.||
T Consensus        88 ~~a~Ig~~~q~~~~~~~~~~~i~IG~~~~I~~~~~I~~g~~-------~~~~~~IG~~~~I~~~~~I------~~~~~IG  154 (305)
T 3t57_A           88 HHAVVGVKCQDLKYKHGDECFLCIGNNNEIREFCSIHRSSK-------PSDKTVIGDNNLIMGSCHI------AHDCKIG  154 (305)
T ss_dssp             TTCEEEECCCCTTCCTTCCEEEEECSSCEECTTCEEECCSS-------TTCCEEECSSCEECTTCEE------CTTCEEC
T ss_pred             CccEeCccccccceecCCCceEEECCCcccCceEEEeeccc-------ccCccEEccCccccceEEE------eCceEeC
Confidence            99999542         134579999999999999964321       1234778888888877777      6899999


Q ss_pred             CCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          199 DNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       199 ~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ++++++.++.+..++.||++++|+.++.+..+++||++++++++++|.++  +++++++++.
T Consensus       155 ~~~~i~~~~~i~g~v~Igd~~~Ig~~~~V~~~v~IG~~a~ig~gs~V~~d--vp~~~~~~G~  214 (305)
T 3t57_A          155 DRNIFANNTLLAGHVVVEDNTHTAGASVVHQFCHIGSFAFIGGGSVVSQD--VPKYMMVAGE  214 (305)
T ss_dssp             SSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETT
T ss_pred             CceEECCCcccCCCCEECCceEEcCCCEEcCCeEECCCCEEcCCCeEccc--CCCCeEEecC
Confidence            99999999999999999999999999999999999999999999999986  8999988764

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.95  E-value=1.7e-26  Score=209.38  Aligned_cols=211  Identities=22%  Similarity=0.364  Sum_probs=174.4

Q ss_pred             hhhhhccchhhHHHHHHHHHhhcc------cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEE
Q 040779           29 FLLLKVRRPCLSSLSTLFLRRLST------ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKL  102 (300)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~I  102 (300)
                      ++....|+..|..+.    +++.+      .+++.+.|++++.++++++|+++++|++++.||+++.|+++++|++++.|
T Consensus        95 ~l~~~~p~~~~~~~~----~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~I  170 (372)
T 3pmo_A           95 ALVVANPYLAYASLS----HLFDRKPKAAAGIHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVI  170 (372)
T ss_dssp             EEECSCHHHHHHHHH----GGGCCCCCCCSEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             EEEECCHHHHHHHHH----HHhccccccccccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            344455555554443    44433      35667777778888888999999999999999999999999999999999


Q ss_pred             CCCCEECCCcEEeCCcEECCCcEEccCcEEccCC---------------CCceeeccceEEccccEEeeeecCcccccCC
Q 040779          103 GDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL---------------PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGD  167 (300)
Q Consensus       103 g~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~---------------~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~  167 (300)
                      |++|.|++++.|.++++||++|.|++++.|..+.               .+.++||+++.|++++.|.+.         .
T Consensus       171 G~~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~~~i~~~g~v~IGd~v~IGa~~~I~~g---------~  241 (372)
T 3pmo_A          171 GEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRG---------A  241 (372)
T ss_dssp             CTTCEECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEEEECCCCCCEEECSSCEECTTCEEECC---------S
T ss_pred             CCCcccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcceeccccCCeEECCCCEECCCcEEccC---------c
Confidence            9999999999999999999999999999997542               246899999999999999432         1


Q ss_pred             cceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEcc
Q 040779          168 ECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQ  247 (300)
Q Consensus       168 ~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~  247 (300)
                      ...+.||+++.++.++.|      .+++.||++++++.++.+..++.||++++|+.++.+.+++.||+++++++++.|.+
T Consensus       242 ~~~t~IG~~~~I~~~v~I------~~~v~IG~~~~I~~~~~I~~~v~IG~~~~Ig~~a~V~~~v~Ig~~~vI~a~s~V~k  315 (372)
T 3pmo_A          242 LSDTLIGNGVKLDNQIMI------AHNVQIGDHTAMAACVGISGSAKIGRHCMLAGGVGLVGHIEICDNVFVTGMTMVTR  315 (372)
T ss_dssp             SSCEEECTTCEECTTCEE------CTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECSSEEECTTCEECS
T ss_pred             ccceEECCCCEECCCCEE------CCCCEECCCCEECCCCEECCCCEECCCeEEeCCCEECCCCEECCCCEEeeCCEEcc
Confidence            234677887777777776      68999999999999999999999999999999999999999999999999999998


Q ss_pred             CcEECCCcEEcc
Q 040779          248 FCHIGSHSFIGG  259 (300)
Q Consensus       248 ~~~I~~~~vv~~  259 (300)
                      ++. ++++++.+
T Consensus       316 ~v~-~~~~~~~G  326 (372)
T 3pmo_A          316 SIT-EPGSYSSG  326 (372)
T ss_dssp             CBC-SCEEECCS
T ss_pred             CcC-CCCcEEEe
Confidence            732 77777554

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.94  E-value=6.9e-26  Score=206.14  Aligned_cols=190  Identities=21%  Similarity=0.299  Sum_probs=165.6

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++.+.+++++.|++++.|+++++|++++.||+++.|++++.|++++.||++|.|++++.|.++++||++|.|+++++|.
T Consensus       127 i~~~~~i~~~a~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig  206 (374)
T 2iu8_A          127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIG  206 (374)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEE
T ss_pred             cCCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEEC
Confidence            56677888888999999999999999999999999999999999999999999999999999899999999999999997


Q ss_pred             cCC----------------CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEE
Q 040779          134 DDL----------------PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVI  197 (300)
Q Consensus       134 ~~~----------------~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~I  197 (300)
                      .+.                .+.++||+++.|+++++|.+..         .....||+++.+...+.|      ++++.|
T Consensus       207 ~~~~~~~~~~~~~~~~i~~~g~v~Ig~~v~IG~~~~I~~~~---------~~~t~ig~~~~i~~~v~I------~~~v~I  271 (374)
T 2iu8_A          207 SCGFGYVTSAFGQHKHLKHLGKVIIEDDVEIGANTTIDRGR---------FKHSVVREGSKIDNLVQI------AHQVEV  271 (374)
T ss_dssp             EECSCEEEETTTEEEECCCCCCEEECTTCEECTTCEEEECS---------SSCEEECTTCEECTTCEE------CTTCEE
T ss_pred             cCCcccccccCCceeEeeeeccEEECCCCEECCCcEEccCc---------ccceeECCCcEECCcccc------CCccEE
Confidence            541                2358999999999999996432         223566776666666555      789999


Q ss_pred             CCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          198 GDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       198 G~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      |+++.|.+++.+..++.||++++|+.++.+.++++||++++|+++++|.++  +++++++++.
T Consensus       272 G~~~~i~~~~~v~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~I~a~s~V~~~--v~~~~~~~G~  332 (374)
T 2iu8_A          272 GQHSMIVAQAGIAGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS--ITSPGIYGGA  332 (374)
T ss_dssp             CTTCEECTTCEECTTCEECSSCEECTTCEECSSCEECTTEEECTTCEECSC--BCSCEEEEET
T ss_pred             CCCCEEccCcccCCCcEECCCeEEecCcEECCCcccCCCcEEccCceeecc--cCCCcEEeCC
Confidence            999999999999999999999999999999999999999999999999986  6788776553

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.94  E-value=1.1e-25  Score=186.41  Aligned_cols=162  Identities=22%  Similarity=0.305  Sum_probs=118.4

Q ss_pred             CCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779           67 SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN  146 (300)
Q Consensus        67 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~  146 (300)
                      |++++|+|+++|.+++.||+++.|++++.|++++.||+++.|++++.|.++++||++|.|++++.|.+    .+.|++++
T Consensus         1 G~~~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~----~~~Ig~~~   76 (192)
T 3mqg_A            1 GHMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYD----NVFLEDDV   76 (192)
T ss_dssp             --CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECT----TEEECTTC
T ss_pred             CCCCEECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeC----CCEECCCC
Confidence            46778888888888888999999988888888888888888888888877788888888777777754    24444444


Q ss_pred             EEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCce
Q 040779          147 IIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTL  226 (300)
Q Consensus       147 ~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~  226 (300)
                      .+++++.+...                                                   ..+...+..      . .
T Consensus        77 ~ig~~~~~~~~---------------------------------------------------~~~~~~~~~------~-~   98 (192)
T 3mqg_A           77 FCGPSMVFTNV---------------------------------------------------YNPRAAIER------K-S   98 (192)
T ss_dssp             EECTTCBCCSC---------------------------------------------------SSCBTTBCC------G-G
T ss_pred             EECCceEEecc---------------------------------------------------cCCcccccc------c-c
Confidence            44433332100                                                   000111111      1 1


Q ss_pred             ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhh
Q 040779          227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRR  290 (300)
Q Consensus       227 v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~  290 (300)
                      ...+++||+++|||.+++|.++++|+++++|+++|+|++|+|++++++|+|||..+...+..++
T Consensus        99 ~~~~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PAk~i~~~~~~~~~  162 (192)
T 3mqg_A           99 EYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQ  162 (192)
T ss_dssp             GCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEBCTTSCB
T ss_pred             ccCCcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEEEccCCEEEEeecccccc
Confidence            2357999999999999999999999999999999999999999999999999965444444333

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.93  E-value=8.9e-25  Score=190.68  Aligned_cols=188  Identities=16%  Similarity=0.257  Sum_probs=151.8

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCC--------------cEECCCCEECCCcEEeCCcE
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSA--------------AKLGDGCLLYPSSHIFGNTE  119 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~--------------~~Ig~~~~I~~~~~I~~~~~  119 (300)
                      +++.+.|++.++|++++.|++++.|.+++.||+++.|++++.|+.+              +.||+++.|++++.|.+++.
T Consensus        11 I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~~~   90 (273)
T 3fs8_A           11 IKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGDTI   90 (273)
T ss_dssp             ECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESSCE
T ss_pred             ECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCCCE
Confidence            5556666666777777777777777777778888888888888765              88899999999999988999


Q ss_pred             ECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECC
Q 040779          120 LGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGD  199 (300)
Q Consensus       120 IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~  199 (300)
                      ||+++.|++++.|..    .+.|++++.|+.++.+..             .+.||+++.+++++.|      .+++.|++
T Consensus        91 Ig~~~~Ig~~~~I~~----~~~Ig~~~~Ig~~~~i~~-------------~~~IG~~~~I~~~~~I------~~~~~ig~  147 (273)
T 3fs8_A           91 IGDNFQTGHKVTIRE----NTKIGNNVKIGTLSDIQH-------------HVYIGNYVNIHSNVFV------GEKSIIKD  147 (273)
T ss_dssp             ECTTCEECSSCEECS----SCEECSSCEECTTCEECS-------------SCEECSSCEECTTCEE------CTTCEECT
T ss_pred             ECCCCEECCceEECC----CCEECCCCEECccceeCC-------------ceEECCceEECCCCEE------CCCceeCC
Confidence            999999999998875    388888888888887732             2667777777777766      56778888


Q ss_pred             CCEEccccEECc----------CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCC
Q 040779          200 NNLIMGSCHIAH----------DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQD  266 (300)
Q Consensus       200 ~~~i~~~~~i~~----------~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~  266 (300)
                      ++++.+++.+..          ++.||++++|+.++.+..+++||++++|+++++|.++  +++++++++. +.+.++
T Consensus       148 ~~~i~~~~~i~~~~~~~~~~~~~v~Ig~~~~IG~~~~I~~g~~IG~~~~IgagsvV~~d--vp~~~~~~G~PA~~i~~  223 (273)
T 3fs8_A          148 FVWLFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKD--VPKETVVVGNPAREICS  223 (273)
T ss_dssp             TCEECTTCEECCCSSSSCSCCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEE
T ss_pred             ceeecCceEecCCCCCcccccCCcEECCCeEEcCCCEEcCCCEECCCCEECCCCEECcc--CCCCcEEEecCcEEecc
Confidence            888888887765          6999999999999999999999999999999999976  8999987664 555443

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.93  E-value=7.7e-25  Score=189.61  Aligned_cols=171  Identities=20%  Similarity=0.296  Sum_probs=142.3

Q ss_pred             cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEE-------------eCCcE
Q 040779           53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHI-------------FGNTE  119 (300)
Q Consensus        53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I-------------~~~~~  119 (300)
                      .+++.+.|++.+++++++.|+|+++|++++.||++++|++++.|.++++||+++.|++++.|             ...+.
T Consensus         2 ~I~p~a~I~~~a~ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~   81 (259)
T 3hsq_A            2 KIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTV   81 (259)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEE
T ss_pred             ccCCCcEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEE
Confidence            36888999999999999999999999999999999999999999989999999999999988             45666


Q ss_pred             ECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECC
Q 040779          120 LGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGD  199 (300)
Q Consensus       120 IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~  199 (300)
                      ||+++.|++++.|.....                             ....+.||+++.++.++.|      .+++.||+
T Consensus        82 IG~~~~Ig~~~~I~~~~~-----------------------------~~~~~~IG~~~~I~~~~~I------~~~~~IG~  126 (259)
T 3hsq_A           82 IGDHNIFREYSNIHKGTK-----------------------------EDSPTVIGNKNYFMGNSHV------GHDCILGN  126 (259)
T ss_dssp             ECSSCEECTTCEEECCSB-----------------------------TTBCEEECSSCEECTTCEE------CTTCEECS
T ss_pred             ECCCcEECCCCEECCCcc-----------------------------CCCcEEECCCcEEcCCcEE------CCCcEECC
Confidence            666666666666653100                             1123455566666655555      57899999


Q ss_pred             CCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          200 NNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       200 ~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +++++.++.+.+++.||++++|+.++.+..+++||++++++++++|.+  .+++++++.+.
T Consensus       127 ~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~~~Vg~~s~V~~--dvp~~~~~~G~  185 (259)
T 3hsq_A          127 NNILTHGAVLAGHVTLGNFAFISGLVAVHQFCFVGDYSMVAGLAKVVQ--DVPPYSTVDGN  185 (259)
T ss_dssp             SCEECTTCEECTTCEECSSCEECSSEEECTTCEECTTCEECSSEEECS--BBCTTEEEETT
T ss_pred             ccEEcCCceECCccEECCCcEEeCCCEECCCCEECCCCEECCCCEEcc--cCCCCcEEecc
Confidence            999999999999999999999999999999999999999999999997  47999988764

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.93  E-value=7.6e-25  Score=190.31  Aligned_cols=172  Identities=17%  Similarity=0.229  Sum_probs=142.1

Q ss_pred             cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEe-------------CCcE
Q 040779           53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF-------------GNTE  119 (300)
Q Consensus        53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-------------~~~~  119 (300)
                      .+++.+.|++.++|++++.|+|+++|++++.||++++|++++.|.++++||+++.|++++.|+             .++.
T Consensus         6 ~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~   85 (266)
T 3r0s_A            6 KIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVV   85 (266)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEE
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEE
Confidence            478899999999999999999999999999999999999999999999999999999998885             3555


Q ss_pred             ECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECC
Q 040779          120 LGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGD  199 (300)
Q Consensus       120 IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~  199 (300)
                      ||++|.|++++.|....                            ......+.||+++.++.++.+      .+++.||+
T Consensus        86 IG~~~~Ig~~~~I~~~~----------------------------~~~~~~~~IG~~~~I~~~~~I------~~~~~IG~  131 (266)
T 3r0s_A           86 IGKNATIREFATINSGT----------------------------AKGDGFTRIGDNAFIMAYCHI------AHDCLLGN  131 (266)
T ss_dssp             ECTTCEECTTCEEECCC----------------------------TTTTSEEEECTTCEECTTCEE------CTTCEECS
T ss_pred             ECCCCEECCceEecCCc----------------------------ccCCccEEECCCceeCCcceE------ccccccCC
Confidence            66666666665554310                            011223556666666666655      57889999


Q ss_pred             CCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          200 NNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       200 ~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +++++.++.+..++.||++++|+.++.+..+++||++++++++++|.++  +++++++++.
T Consensus       132 ~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~Ig~~a~Vg~~s~V~~d--vp~~~~~~G~  190 (266)
T 3r0s_A          132 NIILANNATLAGHVELGDFTVVGGLTPIHQFVKVGEGCMIAGASALSQD--IVPFCLAEGN  190 (266)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCBBCSC--BCTTEEEEEB
T ss_pred             CeEECCCceecCCeEECCCcEEccCCEECCCcEECCCCEEccCCeEecc--cCCCeEEecc
Confidence            9999999999999999999999999999999999999999999999975  8999988653

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.93  E-value=2.8e-24  Score=186.98  Aligned_cols=183  Identities=14%  Similarity=0.168  Sum_probs=137.0

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++.+.|++.++|++++.|+|+++|++++.||++++|++++.|.++++||++|.|++++.|+....        +..+. 
T Consensus         4 I~p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig~~~~--------~~~~~-   74 (270)
T 1j2z_A            4 IAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQ--------DLKYK-   74 (270)
T ss_dssp             BCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCS--------CSSCC-
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEECcCCc--------ccccc-
Confidence            678888888888989999999999988899999999988888888888888888888887752110        00000 


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC  213 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v  213 (300)
                       .....+.||+++.|++++.|....      ......+.||+++.++.++.|      .+++.||++++|+.++.+.+++
T Consensus        75 -g~~~~~~IG~~~~I~~~~~I~~~~------~~~~~~~~IG~~~~I~~~~~I------~~~~~IG~~~~I~~~~~i~~~v  141 (270)
T 1j2z_A           75 -GEYSELIIGEDNLIREFCMINPGT------EGGIKKTLIGDKNLLMAYVHV------AHDCVIGSHCILANGVTLAGHI  141 (270)
T ss_dssp             -SCCCEEEECSSCEECTTCEECCCC------TTTTSEEEECSSCEECTTCEE------CTTCEECSSCEECTTCEECTTC
T ss_pred             -CCccceEECCCCEECCCeEEcCCe------ecCCccEEECCCcEECccccc------CCCcEECCCcEEcCCccccCcc
Confidence             001234445555555555542211      001123566666666666666      5789999999999999999999


Q ss_pred             EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .||++++|+.++.+..+++||++++++++++|.++  +++++++.+.
T Consensus       142 ~Igd~~~Ig~~a~V~~~v~IG~~a~Ig~~s~V~~d--vp~~~~~~G~  186 (270)
T 1j2z_A          142 EIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVEGN  186 (270)
T ss_dssp             EECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETT
T ss_pred             EECCCeEEecCCEECCCcEeCCceEEecCcEeccc--CCCCeEEecC
Confidence            99999999999999999999999999999999975  8899988664

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.92  E-value=3.1e-24  Score=188.09  Aligned_cols=184  Identities=18%  Similarity=0.230  Sum_probs=131.0

Q ss_pred             cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      .+++.+.|++.++|++++.|+++++|++++.||+++.|++++.|.++++||++|.|++++.|+....        +..+.
T Consensus        24 ~I~p~a~I~~~a~ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~--------~~~~~   95 (283)
T 4eqy_A           24 RIHPTAIIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGGRPQ--------DMKYK   95 (283)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEECSEEEECSSCEECTTEEEEECCC--------CTTCC
T ss_pred             ccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEEcCCcEECCCCc--------ccccc
Confidence            3667777777777777777777777777777777777777777777777777777777776642110        00000


Q ss_pred             ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC
Q 040779          133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD  212 (300)
Q Consensus       133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~  212 (300)
                        .....+.||+++.|++++.|...+      ..+...+.||+++.++.++.+      .+++.||++++++.++.+..+
T Consensus        96 --g~~~~v~IG~~~~Ig~~~~I~~g~------~~~~~~~~IG~~~~I~~~~~I------~~~~~IG~~v~i~~~~~i~~~  161 (283)
T 4eqy_A           96 --DEPTRLVIGDRNTIREFTTIHTGT------VQDAGVTTLGDDNWIMAYVHI------GHDCRVGSHVVLSSNAQMAGH  161 (283)
T ss_dssp             --CCCCEEEECSSCEECTTEEEECCC------TTTTSEEEECSSCEECTTCEE------CTTCEECSSCEECTTCEECTT
T ss_pred             --CCCceEEECCCcccCcceeEccce------ecCCCceEECCCcEECceeEE------cCCcEECCCcEECCCceEcCC
Confidence              001234555555555555553211      111224667777777766666      578899999999999999999


Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +.||++++|+.++.+..+++||++++++++++|.++  +++++++.+.
T Consensus       162 v~Igd~~~Ig~~a~V~~~v~Ig~~~vvg~~s~V~~d--vp~~~~~~G~  207 (283)
T 4eqy_A          162 VEIGDWAIVGGMSGVHQYVRIGAHSMLGGASALVQD--IPPFVIAAGN  207 (283)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETB
T ss_pred             cEECCCeEEecCCEEcCCeEECCCcEECCCCeEecc--cCCCcEEecc
Confidence            999999999999999999999999999999999975  8999888663

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.92  E-value=7.2e-24  Score=184.13  Aligned_cols=184  Identities=17%  Similarity=0.265  Sum_probs=131.6

Q ss_pred             cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      .+++.+.|++.++|++++.|+|+++|++++.||+++.|++++.|.+++.||++|.|++++.|+....        +..+.
T Consensus         9 ~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~--------~~~~~   80 (265)
T 4e6u_A            9 LIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQ--------DLKYK   80 (265)
T ss_dssp             CBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCC--------CTTCC
T ss_pred             eECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccc--------ccccc
Confidence            4677777777777777777777777777777888888877777777777777777777777732100        00000


Q ss_pred             ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC
Q 040779          133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD  212 (300)
Q Consensus       133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~  212 (300)
                        .....+.||+++.|++++.+...+      ..+...+.||+++.++.++.+      .+++.||++++++.++.+..+
T Consensus        81 --g~~~~~~IG~~~~Ig~~~~I~~g~------~~~~~~~~IG~~~~I~~~~~I------~~~~~Ig~~~~i~~~~~i~~~  146 (265)
T 4e6u_A           81 --GEETWLEIGNNNLIREHCSLHRGT------VQDNALTKIGSHNLLMVNTHI------AHDCIVGDHNIFANNVGVAGH  146 (265)
T ss_dssp             --SCCCEEEECSSCEECTTCEEECCC------TTTTSEEEECSSCEECTTCEE------CTTCEECSSCEECTTCEECTT
T ss_pred             --CCCCeEEECCCeEECCceEECccc------ccCCCceEEccCcEEeeeeEE------cccEEECCCcEEcCCcEECCC
Confidence              001224445555555555543211      111223566666666666666      578899999999999999999


Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      +.||++++|+.++.+..+++||++++++++++|.++  +++++++.+.
T Consensus       147 v~Igd~~~Ig~~a~V~~~v~Ig~~~~i~~~svV~~d--vp~~~~~~G~  192 (265)
T 4e6u_A          147 VHIGDHVIVGGNSGIHQFCKIDSYSMIGGASLILKD--VPAYVMASGN  192 (265)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEEET
T ss_pred             cEECCCeEEcCCCEECCCcEECCCCEEcCCCEEccc--CCCCeEEEcc
Confidence            999999999999999999999999999999999975  7999988764

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.92  E-value=7.7e-24  Score=183.65  Aligned_cols=183  Identities=16%  Similarity=0.218  Sum_probs=120.5

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++.+.|++.++|++++.|+++++|++++.||++++|++++.|.++++||++|.|++++.|+...        .+..+..
T Consensus         8 I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~--------~~~~~~g   79 (262)
T 2qia_A            8 VHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVN--------QDLKYAG   79 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECC--------SCTTCCS
T ss_pred             ECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEECCCcEECCCCEEecceEECcCC--------ccccccC
Confidence            34445555555555555555555555555555555555555555555555555555555553200        0000000


Q ss_pred             cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779          134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC  213 (300)
Q Consensus       134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v  213 (300)
                        ....+.||+++.|++++.|....      ......+.||+++.++.++.|      .+++.||++++++.++.+..++
T Consensus        80 --~~~~~~IG~~~~Ig~~~~I~~~~------~~~~~~~~IG~~~~Ig~~~~I------~~~~~Ig~~~~i~~~~~i~~~v  145 (262)
T 2qia_A           80 --EPTRVEIGDRNRIRESVTIHRGT------VQGGGLTKVGSDNLLMINAHI------AHDCTVGNRCILANNATLAGHV  145 (262)
T ss_dssp             --CCCEEEECSSCEECTTCEEECCC------TTTTSEEEECSSCEECTTCEE------CTTCEECSSCEECTTCEECTTC
T ss_pred             --CccceEECCCceeCCCCEEcCCc------cCCCCcCEECCCcEEeeeeEE------CCCCEECCCeEECCcccccCCc
Confidence              12235566666666666664321      011134677777777777766      5788999999999999999999


Q ss_pred             EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .||++++++.++.+..+++||++++++++++|.++  +++++++.+.
T Consensus       146 ~Ig~~~~Ig~~~~I~~~v~Ig~~~~ig~~s~V~~~--v~~~~~~~G~  190 (262)
T 2qia_A          146 SVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGN  190 (262)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEB
T ss_pred             EECCCcEEccCCEECCCCEECCCCEEccCCEECCc--CCCCeEEecc
Confidence            99999999999999999999999999999999974  8899988764

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.91  E-value=1.1e-23  Score=193.43  Aligned_cols=168  Identities=17%  Similarity=0.124  Sum_probs=126.1

Q ss_pred             ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779           70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG  149 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig  149 (300)
                      ..|++++.+.+++.|++++.|++++.|.+++.||+++.|++++.|.+++.||++|.|++++.|.+     +.|++++.|+
T Consensus       233 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~-----~~i~~~~~i~  307 (401)
T 2ggo_A          233 GNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKE-----SVIMEGSKIP  307 (401)
T ss_dssp             SEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEES-----EEECTTCEEE
T ss_pred             ceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-----CEEcCCcEEC
Confidence            56777788888888888888888888888888888888888888888888888888888888855     7888888888


Q ss_pred             cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecC
Q 040779          150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG  229 (300)
Q Consensus       150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~  229 (300)
                      +++.++.              ..||+++.|+.++.+.....-       .         -.+++.+++++.+...  ...
T Consensus       308 ~~~~i~~--------------~~Ig~~~~Ig~~~~i~~~~~~-------~---------~~~~~~i~~~~~~~~~--~~~  355 (401)
T 2ggo_A          308 HLSYVGD--------------SVIAEDVNFGAGTLIANLRFD-------E---------KEVKVNVKGKRISSGR--RKL  355 (401)
T ss_dssp             ESCEEES--------------CEECTTCEECTTCEECCSCTT-------C---------SCCEEEETTEEEECSC--SSC
T ss_pred             CCceEcc--------------eEECCCcEECCCcEEcCcccC-------C---------CceeEEECCceEEecc--ccc
Confidence            7777621              344444444444444211100       0         0134555655555433  356


Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEe
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA  274 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~  274 (300)
                      +++||++||||++++|.++++|+++++|+++|+|++|+|++++++
T Consensus       356 ~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~vp~~~~v~  400 (401)
T 2ggo_A          356 GAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGEFFK  400 (401)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTCEEC
T ss_pred             CcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccccCCCcEEe
Confidence            899999999999999999999999999999999999999998874

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.91  E-value=7.9e-23  Score=193.01  Aligned_cols=191  Identities=21%  Similarity=0.304  Sum_probs=134.2

Q ss_pred             cceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccC
Q 040779           56 HVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDD  135 (300)
Q Consensus        56 ~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~  135 (300)
                      ....+.+.+.|++++.|++++.+.+++.++.++.|++++.+. ++.+++++.+.. +.+. ...+++++.+++++++.. 
T Consensus       276 ~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~-~~~i~~~~~i~~-~~i~-~~~ig~~~~ig~~~~i~~-  351 (501)
T 3st8_A          276 ATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLT-DVAVGDGASVVR-THGS-SSSIGDGAAVGPFTYLRP-  351 (501)
T ss_dssp             GGEEECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEE-EEEECTTCEECS-EEEE-EEEECTTCEECSSEEECT-
T ss_pred             ccccccCceEECCcceecceeeecCccccccceEEeeceeec-CceEecCCEEEe-eccc-ccccccccccCCceeecC-
Confidence            345566667777777777777777777777777777777777 566666666543 3333 556677777777777765 


Q ss_pred             CCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEe
Q 040779          136 LPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKI  215 (300)
Q Consensus       136 ~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~I  215 (300)
                         .+.|++++.||.++.+.                    ++.+            +.++.|+..++++ ++.|++++.|
T Consensus       352 ---~~~i~~~v~IG~~v~ik--------------------~s~I------------g~gskI~~~~~i~-d~~Ig~~v~I  395 (501)
T 3st8_A          352 ---GTALGADGKLGAFVEVK--------------------NSTI------------GTGTKVPHLTYVG-DADIGEYSNI  395 (501)
T ss_dssp             ---TCEECTTCEEEETEEEE--------------------SCEE------------CTTCEEEESCEEE-SEEECSSCEE
T ss_pred             ---CcEEccccccCCeEEEc--------------------ccee------------cCCcEEeccceec-CceEcCCCEE
Confidence               36666777777666652                    2222            2233333333332 3666777777


Q ss_pred             CCccEEccCceecC-ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE-EeeeceEEEecChhhhhh
Q 040779          216 GNYNIFANNTLLAG-HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM-VAGERAVLRGLNLEGLRR  290 (300)
Q Consensus       216 g~~~~i~~~~~v~~-~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~-~~G~Pa~~~~~~~~~~~~  290 (300)
                      |.++++.+..-+.+ .++||++|+||+++.+.++++||++++|+++|+|++|+|++++ +++.|+    +|++.|.+
T Consensus       396 G~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~dvp~~~l~~~~~~~----~~~~~w~~  468 (501)
T 3st8_A          396 GASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVREDVPPGALAVSAGPQ----RNIENWVQ  468 (501)
T ss_dssp             CTTCEEECBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCC----CCCTTHHH
T ss_pred             CCCEEEEcccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcccCCCCeEEeccCc----eeccchhh
Confidence            77777766544444 5999999999999999999999999999999999999999997 555777    66677754

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.89  E-value=1.4e-22  Score=169.38  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-EecC
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGLN  284 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~~  284 (300)
                      ....++++||++||||.+++|.++++|+++++|+++++|++|+|++++++|+|||+ +++.
T Consensus       129 ~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~v~~~~v~~G~Pa~~i~~~~  189 (205)
T 3vbi_A          129 NVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARK  189 (205)
T ss_dssp             CCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECC
T ss_pred             eeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCccCCCeEEEccCCEEeeech
Confidence            34467899999999999999999999999999999999999999999999999995 4444

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.88  E-value=2.9e-21  Score=171.62  Aligned_cols=207  Identities=12%  Similarity=0.114  Sum_probs=129.2

Q ss_pred             cceecCc-cceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779           56 HVYGDKY-ETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus        56 ~~~~i~~-~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      ...+|++ ++.+++++.|++++.|.+++.|+++|.|++++.|+ ++.|++++.|++++.|. ++.|+++|.|..++.+.+
T Consensus        57 ~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~-~s~I~~~~~I~~~~~i~~  134 (334)
T 2pig_A           57 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQ-SSSVREECAIYGDARVLN  134 (334)
T ss_dssp             SSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEE-SCEEESSEEECTTCEEES
T ss_pred             CceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEe-ccEEcCCeEEecCCEEeC
Confidence            4457777 78888888888888888888888888888888888 78888888888888776 334444444444443332


Q ss_pred             CC------------CC-----------ceeeccceEEccccEEeeeecCcccccCC--------cceeeeCcccEECCCe
Q 040779          135 DL------------PG-----------QTVFGCNNIIGHHAVVGVKCQDMKYKSGD--------ECFVDVGNNNEFREHV  183 (300)
Q Consensus       135 ~~------------~~-----------~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~--------~~~~~IG~~~~i~~~~  183 (300)
                      ..            ..           .+.|+++|.|+.++.++...-...-...+        .....|++++.+..++
T Consensus       135 ~s~I~~~~~~~~~~~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a  214 (334)
T 2pig_A          135 QSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHA  214 (334)
T ss_dssp             SCEEEC--------CCCEEECTTCEEESCEEETTCEECTTCEEESEEECTTCEECTTCEEECCSSCCEEECTTCEECTTC
T ss_pred             CEEEeecceeecccCCCeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCceeccEEECCCcEEeeeE
Confidence            10            00           13333344444444442100000000000        0112233333333333


Q ss_pred             EEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecC-ceEECCCcEECcCcEEccCcEECCCcEEccCCE
Q 040779          184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG-HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSV  262 (300)
Q Consensus       184 ~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~-~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~sv  262 (300)
                      .+.+...-.....+-.+++++.++.|.+++.|++++.|+.++.+.+ .+.|+++++||.++.+.+++.|++++.|++++.
T Consensus       215 ~V~R~~~~~Ei~~i~~~a~I~~~a~I~~nv~Ig~nv~Ig~~~~ia~g~~~i~~~~vIGg~a~I~g~v~Ig~~~~I~~~s~  294 (334)
T 2pig_A          215 RVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAA  294 (334)
T ss_dssp             EEECCSSTTCCCEECTTCEECTTCEEESSEEECTTEEECTTCEEESSCEEEESSEEECTTCEEESSEEEESSEEECTTCE
T ss_pred             EEeccCCHHHhhhhhhcceecCCEEECCCCEEcCCCEEeCCcEEcCCCeEECCeEEEcCCcEECcCcEECCCcEECCCcE
Confidence            3333322222233334566667777777788888888877777774 788999999999999999999999999999998


Q ss_pred             EC
Q 040779          263 VS  264 (300)
Q Consensus       263 v~  264 (300)
                      |.
T Consensus       295 v~  296 (334)
T 2pig_A          295 VI  296 (334)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=162.66  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=49.0

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEec
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGL  283 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~  283 (300)
                      ++.||+++||+.++.|.++++|+++|+|+++++|++|  +|+++++.|.||+.+..
T Consensus       102 ~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~~~~  157 (194)
T 3tv0_A          102 AMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLRRVQ  157 (194)
T ss_dssp             CSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCEEEE
T ss_pred             eeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEEeec
Confidence            4788999999999999999999999999999999999  89999999999985433

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.87  E-value=8.8e-21  Score=168.58  Aligned_cols=57  Identities=12%  Similarity=0.255  Sum_probs=40.0

Q ss_pred             ccEEccCceecCceEECCCcEECcCcEEcc-CcEECCCcEEccCCEECCC--CCCCcEEe
Q 040779          218 YNIFANNTLLAGHVVVEDYTHTAGAIVIHQ-FCHIGSHSFIGGGSVVSQD--VPKYSMVA  274 (300)
Q Consensus       218 ~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~-~~~I~~~~vv~~~svv~~~--v~~~~~~~  274 (300)
                      ++.++.++.+.+++.|++++.|+.++.+.+ .+.|++.++|++++.+...  +.+++++.
T Consensus       231 ~a~I~~~a~I~~nv~Ig~nv~Ig~~~~ia~g~~~i~~~~vIGg~a~I~g~v~Ig~~~~I~  290 (334)
T 2pig_A          231 SSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEIS  290 (334)
T ss_dssp             TCEECTTCEEESSEEECTTEEECTTCEEESSCEEEESSEEECTTCEEESSEEEESSEEEC
T ss_pred             cceecCCEEECCCCEEcCCCEEeCCcEEcCCCeEECCeEEEcCCcEECcCcEECCCcEEC
Confidence            345556677777788888888888777775 5778888888888877765  34444443

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.86  E-value=3.7e-21  Score=164.60  Aligned_cols=59  Identities=29%  Similarity=0.512  Sum_probs=50.6

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-EecChhh
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGLNLEG  287 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~~~~~  287 (300)
                      .+++||++|+||.++.|.++++|+++++|+++++|++++|+++++.|+|||+ ++++...
T Consensus       164 ~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~~vp~~~v~~G~Pak~i~~~~~~~  223 (240)
T 3r8y_A          164 KPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIKEIDEKT  223 (240)
T ss_dssp             CCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEEC----
T ss_pred             CCcEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcCCCcEEEccCCEEEecCCHHH
Confidence            4688999999999999999999999999999999999999999999999995 5444433

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.86  E-value=1.7e-21  Score=161.39  Aligned_cols=64  Identities=34%  Similarity=0.478  Sum_probs=56.0

Q ss_pred             cCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-EecChh
Q 040779          223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGLNLE  286 (300)
Q Consensus       223 ~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~~~~  286 (300)
                      .+..+.++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+|||+ ++++.+
T Consensus       125 ~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~~~~  189 (195)
T 3nz2_A          125 AWETICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQDVPPDTLVGGTPARILRSLKDP  189 (195)
T ss_dssp             TCCCEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSSEEEETTTTEEEEECC--
T ss_pred             ccceecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccccCCCcEEEccCCEEecccChH
Confidence            3455667899999999999999999999999999999999999999999999999994 555443

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.85  E-value=2.7e-21  Score=160.65  Aligned_cols=70  Identities=26%  Similarity=0.325  Sum_probs=57.3

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCC
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGF  293 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~  293 (300)
                      +..+.++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+|||+.+...+..+...+
T Consensus       124 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pak~i~~~~~~~~~~~~  193 (199)
T 3ftt_A          124 GFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETL  193 (199)
T ss_dssp             TEEEECCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCCCC-----
T ss_pred             cceecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcccCCCCEEEEECCEEEeeCChhhhhccc
Confidence            4455678999999999999999999999999999999999999999999999999965554444443333

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.85  E-value=1.4e-20  Score=152.98  Aligned_cols=58  Identities=28%  Similarity=0.424  Sum_probs=51.2

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhh
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEG  287 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~  287 (300)
                      +++||+++|||.++.+.++++|+++++|+++++|+  +++|++++++|.||+ +++++.+.
T Consensus        90 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~~~~  150 (173)
T 1xhd_A           90 SCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAED  150 (173)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHH
T ss_pred             CCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCCHHH
Confidence            37899999999999999999999999999999999  579999999999999 45555544

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.85  E-value=1.3e-20  Score=159.03  Aligned_cols=83  Identities=25%  Similarity=0.433  Sum_probs=67.4

Q ss_pred             CCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE
Q 040779          200 NNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV  279 (300)
Q Consensus       200 ~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~  279 (300)
                      ++.|..++.|++++.||+++.+++++.+.++++||++||||.+++|.++++|+++++|+++++|++|+|+++++.|+|||
T Consensus       135 ~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~~v~~~~~~~G~Pa~  214 (220)
T 4ea9_A          135 LAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVRDLPDSVLAIGVPAK  214 (220)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTCEEETTTTE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEccccCCCcEEEEeCCE
Confidence            33333334444555566666666667777789999999999999999999999999999999999999999999999999


Q ss_pred             EEe
Q 040779          280 LRG  282 (300)
Q Consensus       280 ~~~  282 (300)
                      +++
T Consensus       215 i~~  217 (220)
T 4ea9_A          215 IKG  217 (220)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            654

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.85  E-value=8.4e-21  Score=163.52  Aligned_cols=110  Identities=22%  Similarity=0.290  Sum_probs=75.1

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC--cEeCCccEEccCceecCceEECCCcEECcCcEEccC
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD--CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQF  248 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~--v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~  248 (300)
                      +.||+++.|+.++.|...   ...+.||++|.|+.++.+...  ..+.+. .........++++||++||||+++.|.++
T Consensus       106 v~IG~~~~Ig~~~~I~~~---~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~-~~~~~~~~~~~v~Igd~v~IG~~a~I~~g  181 (252)
T 3jqy_B          106 VIIGRRTTIGAGFEVVTD---KCNVTIGHDCMIARDVILRASDGHPIFDI-HSKKRINWAKDIIISSYVWVGRNVSIMKG  181 (252)
T ss_dssp             EEECTTCEECTTCEEECS---SSEEEECTTCEECSSEEEECSCSSCEEET-TTCBBCCCCCCEEECSSCEECSSEEECTT
T ss_pred             EEECCCCEECCCcEEEeC---CCCeEECCCCEEcCCcEEecCCCcccccc-cccccccccCCeEEecCcEECCCCEECCC
Confidence            344444444444444311   114555555555555555432  111110 01123456677999999999999999999


Q ss_pred             cEECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779          249 CHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN  284 (300)
Q Consensus       249 ~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~  284 (300)
                      ++|+++++|+++|+|++|+|++++++|+|||+.+.+
T Consensus       182 v~IG~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  217 (252)
T 3jqy_B          182 VSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKIIKRN  217 (252)
T ss_dssp             CEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             CEECCCCEECCCCEECcccCCCCEEEccCCEEEccC
Confidence            999999999999999999999999999999976665

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.85  E-value=1e-20  Score=176.32  Aligned_cols=160  Identities=14%  Similarity=0.211  Sum_probs=126.7

Q ss_pred             CcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           75 TSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        75 ~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      .++|++++.||+++.|++++.|++++.||+++.|++++.|. ++.||++|.|++++.|.+     +.||+++.|++++.+
T Consensus       259 ~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~-----~~ig~~~~I~~~~~i  332 (456)
T 2v0h_A          259 RFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLK-NVVIGNDVEIKPYSVLED-----SIVGEKAAIGPFSRL  332 (456)
T ss_dssp             GEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEE-EEEECTTCEECSSCEEEE-----EEECTTCEECSSEEE
T ss_pred             ccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEE-eEEEeCCCEEcCCeEEcc-----CcCCCCcEECCccEE
Confidence            56777778888888888888888888899999999999998 889999999999998876     677777777766666


Q ss_pred             eeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEEC
Q 040779          155 GVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVE  234 (300)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig  234 (300)
                                                           ..++.||+++.|++++.+. ++.+++++.+.+.+.+ ++++||
T Consensus       333 -------------------------------------~~~~~ig~~~~ig~~~~i~-~~~i~~~~~i~~~~~~-~~~~Ig  373 (456)
T 2v0h_A          333 -------------------------------------RPGAELAAETHVGNFVEIK-KSTVGKGSKVNHLTYV-GDSEIG  373 (456)
T ss_dssp             -------------------------------------CTTCEECTTCEEEEEEEEE-SCEECTTCEEEEEEEE-ESEEEC
T ss_pred             -------------------------------------CCCCEECCCCEECCCCEEe-ccEECCCCEeccceee-cCcEEC
Confidence                                                 2345555566666665554 5567777777666666 468999


Q ss_pred             CCcEECcCcEEcc-------CcEECCCcEEccCCEECCC--CCCCcEEeeeceEE
Q 040779          235 DYTHTAGAIVIHQ-------FCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVL  280 (300)
Q Consensus       235 ~~~~ig~~~~v~~-------~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~  280 (300)
                      ++|+||.++.+..       +++|+++++||++++|.++  +++++++++. +.+
T Consensus       374 ~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~v~Ig~~~~ig~~-s~v  427 (456)
T 2v0h_A          374 SNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAPVKVANGATIGAG-TTI  427 (456)
T ss_dssp             TTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEESEEECTTCEECTT-CEE
T ss_pred             CCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCCcEECCCCEECCC-CEE
Confidence            9999999999987       8999999999999999998  6999988764 443

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.84  E-value=1.6e-20  Score=154.89  Aligned_cols=60  Identities=25%  Similarity=0.437  Sum_probs=54.7

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-Eec
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGL  283 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~  283 (300)
                      +..+.++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+|||+ +++
T Consensus       128 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~~i~~~  188 (190)
T 3hjj_A          128 GKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKDVPNNVVVGGNPAKVIKTI  188 (190)
T ss_dssp             SEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEEC
T ss_pred             cccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence            445567899999999999999999999999999999999999999999999999995 544

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.84  E-value=2.1e-20  Score=154.35  Aligned_cols=60  Identities=17%  Similarity=0.200  Sum_probs=53.0

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhhhh
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      +++||++|+||.+++|.++++|+++++|+++++|.  +++|+++++.|+||+ +++++.+..+
T Consensus       112 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~~~~~~  174 (191)
T 3ixc_A          112 ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEEEIL  174 (191)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHH
T ss_pred             CCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCCHHHHH
Confidence            38999999999999999999999999999999999  689999999999999 5666654433

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.84  E-value=4.5e-20  Score=172.19  Aligned_cols=162  Identities=14%  Similarity=0.188  Sum_probs=120.2

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      .+.|.+.++||+++.|+++++|. ++.||+++.|++++.|. ++.||+++.|++++.|..++.||+++.|++++.+..  
T Consensus       280 ~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~--  355 (459)
T 4fce_A          280 NVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLE-DARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK--  355 (459)
T ss_dssp             TEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEE-SCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE--
T ss_pred             CeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEe-CCEECCCCEECCccEECCCcEECCCcEECCCeEEee--
Confidence            33333445666666777777776 47777788888888875 688899999999999988899999999999988876  


Q ss_pred             CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-cCcEe
Q 040779          137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-HDCKI  215 (300)
Q Consensus       137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-~~v~I  215 (300)
                         +.|++++.+++++.++.              ..||+++.++.++.+..                  ...+. +++.|
T Consensus       356 ---~~i~~~~~i~~~~~i~~--------------~~Ig~~~~ig~~~~i~~------------------~~~~~~~~v~I  400 (459)
T 4fce_A          356 ---ARLGKGSKAGHLSYLGD--------------AEIGAGVNIGAGTITCN------------------YDGANKFKTII  400 (459)
T ss_dssp             ---EEECTTCEEEEEEEEEE--------------EEECTTCEECTTCEEEC------------------BCSSCBCCEEE
T ss_pred             ---eEEcCCCEECCceEECC--------------eEECCCCEECCCCEEec------------------cccccCCCCEE
Confidence               88888888888887742              45555555555544432                  22122 35777


Q ss_pred             CCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          216 GNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       216 g~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      |++++|+.++.+..+++||++++||++++|.++  +++++++.+
T Consensus       401 g~~~~IG~~~~I~~gv~Ig~~~~igagsvV~~~--v~~~~~~~G  442 (459)
T 4fce_A          401 GDDVFVGSDTQLVAPVTVANGATIGAGTTVTRD--VAENELVIS  442 (459)
T ss_dssp             CTTCEECTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECC
T ss_pred             CCCeEEcCCCEEcCCcEECCCCEECCCCEEccc--cCCCCEEEe
Confidence            777777788888888899999999999999986  789998877

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.84  E-value=2.4e-20  Score=153.66  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             cEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhhh
Q 040779          219 NIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEGL  288 (300)
Q Consensus       219 ~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~~  288 (300)
                      +.|++++.+.+ ++||++||||.+++|.++++|+++++|+++++|.  +++|++++++|+||+ +++++.+..
T Consensus        94 ~~Ig~~~~i~~-~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~~~~~  165 (189)
T 3r1w_A           94 VTIGHQAMLHG-CTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITEKER  165 (189)
T ss_dssp             EEECTTCEEES-CEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECCHHHH
T ss_pred             CEECCCCEEeC-cEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCCHHHH
Confidence            33333333333 8999999999999999999999999999999999  689999999999999 566655443

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.84  E-value=4.3e-20  Score=151.97  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhhhh
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      +++||+++|||.+++|.++++|+++++|+++++|.  +++|+++++.|+||+ +++++.+..+
T Consensus       100 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~~~~~~  162 (187)
T 3r3r_A          100 GCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERS  162 (187)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECCHHHHH
T ss_pred             CcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCCHHHHH
Confidence            48999999999999999999999999999999999  789999999999999 5666655433

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.83  E-value=2.9e-20  Score=154.31  Aligned_cols=64  Identities=25%  Similarity=0.425  Sum_probs=57.0

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecChhh
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNLEG  287 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~~~  287 (300)
                      +..+.++++||++||||++++|.++++||++++|+++|+|++|+|++++++|+||| +++++.+.
T Consensus       125 ~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~vv~G~PArvik~~~~~d  189 (203)
T 1krr_A          125 GEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRD  189 (203)
T ss_dssp             CCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCGGG
T ss_pred             CceeCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcEEEccCcEEeccCChhh
Confidence            34466789999999999999999999999999999999999999999999999999 46665544

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.83  E-value=2.2e-19  Score=148.35  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=66.2

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      +++.+.|++.+.|++++.|+++++|.+++.||+++.|++++.|+.++.||+++.|++++.|.+++.||+++.|++++.+.
T Consensus         6 I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~~~~~   85 (192)
T 3mqg_A            6 IHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPSMVFT   85 (192)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTTCBCC
T ss_pred             ECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCceEEe
Confidence            56777777778888888888888888888888888888888888788888888888888888788888888888877765


Q ss_pred             c
Q 040779          134 D  134 (300)
Q Consensus       134 ~  134 (300)
                      .
T Consensus        86 ~   86 (192)
T 3mqg_A           86 N   86 (192)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.83  E-value=1.1e-19  Score=147.61  Aligned_cols=59  Identities=34%  Similarity=0.528  Sum_probs=50.9

Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhhh
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEGL  288 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~~  288 (300)
                      +++||+++|||.++.+.++++|+++++|+++++|+  +++|++++++|.||+ +++++.+..
T Consensus        88 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~~~~~  149 (173)
T 1v3w_A           88 GAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEI  149 (173)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHH
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCCHHHH
Confidence            47889999999999999999999999999999999  478999999999999 466665543

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.82  E-value=1e-19  Score=160.01  Aligned_cols=162  Identities=17%  Similarity=0.261  Sum_probs=108.0

Q ss_pred             CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779           68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI  147 (300)
Q Consensus        68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~  147 (300)
                      .++.|+|++.|.+++.|++++.|+++ .|..++.||++|.|.+++.|+.++.||++|.|++++.+.+.            
T Consensus       128 ~g~~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~------------  194 (304)
T 3eg4_A          128 AGFRAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGV------------  194 (304)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCC------------
T ss_pred             CCcEEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCc------------
Confidence            45666777777767777777777665 66666666666666666666655666666666655555431            


Q ss_pred             EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779          148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL  227 (300)
Q Consensus       148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v  227 (300)
                                ..                             .....++.||++|+|+.++.|.+++.||++++|++++.+
T Consensus       195 ----------~~-----------------------------~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV  235 (304)
T 3eg4_A          195 ----------LE-----------------------------PMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFI  235 (304)
T ss_dssp             ----------CS-----------------------------STTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ----------cc-----------------------------cCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEE
Confidence                      00                             001356777777777777777888888888888888888


Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeec-------eE-EEecChhhhhhcC
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGER-------AV-LRGLNLEGLRRRG  292 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~P-------a~-~~~~~~~~~~~~~  292 (300)
                      ..++.|++++.   +..  ....|+++++|+++|++++|.      .|.|       |+ ++++..+..++..
T Consensus       236 ~~g~~Igd~~~---g~~--~~~~Ip~~svV~~Gs~v~kd~------~G~P~g~~~~~A~iik~~~~~t~~~~~  297 (304)
T 3eg4_A          236 GKSTKIVDRAT---GEV--FYGEVPPYSVVVAGTMPGKNV------PGENWGPSLYCAVIVKRADEKTRSKTS  297 (304)
T ss_dssp             CTTCCEEETTT---CCE--ECSEECTTEEEEEEEEECCCC------TTSSCCCEEEEEEEEEECCHHHHHHSC
T ss_pred             cCCeEECccce---eee--ccCEeCCCCEEecCcEecCCC------CCCcCcccccceEEEEEccccchhhhh
Confidence            87777777773   222  235799999999999999985      3455       78 5666665544443

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.82  E-value=9.2e-20  Score=153.34  Aligned_cols=59  Identities=15%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEe-eeceEEEecC
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA-GERAVLRGLN  284 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~-G~Pa~~~~~~  284 (300)
                      ...++++||+++|||.+++|.++++|+++++|+++|+|++|+|++++++ |+|||+.+.+
T Consensus       133 ~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~vp~~~i~~aG~Pa~~i~~~  192 (215)
T 2wlg_A          133 NHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVIAGSPAKIVKEN  192 (215)
T ss_dssp             CCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSCCCCCSCEEETTTTEEEECS
T ss_pred             cCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCccCCCeEEEcccCCEEECCC
Confidence            3457899999999999999999999999999999999999999999999 9999965544

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.82  E-value=2.4e-19  Score=164.47  Aligned_cols=190  Identities=14%  Similarity=0.113  Sum_probs=137.6

Q ss_pred             hhhhhhccchhhHHHHHHHHHhhc-----ccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEE
Q 040779           28 SFLLLKVRRPCLSSLSTLFLRRLS-----TALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKL  102 (300)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~I  102 (300)
                      .|+.+..|..+..... .+++.+.     ..+++.+.+.+.+.+++++.|++++.|.+++.||+++.|++++.|++++.|
T Consensus       205 ~~~dI~t~edl~~a~~-~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~I  283 (401)
T 2ggo_A          205 YWMDIGKPWNIIDVNK-WALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTIL  283 (401)
T ss_dssp             CEEECCSHHHHHHHHH-HHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEE
T ss_pred             eEEcCCCHHHHHHHHH-HHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEE
Confidence            4666777776654433 2333322     234556677777888888889999999989999999999999999999999


Q ss_pred             CCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCC
Q 040779          103 GDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREH  182 (300)
Q Consensus       103 g~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~  182 (300)
                      |+++.|++++.|. ++.|++++.|++++.+.+     ++||+++.|++++.+.....    . ...              
T Consensus       284 g~~~~ig~~~~i~-~~~i~~~~~i~~~~~i~~-----~~Ig~~~~Ig~~~~i~~~~~----~-~~~--------------  338 (401)
T 2ggo_A          284 VEKNKIGASVEVK-ESVIMEGSKIPHLSYVGD-----SVIAEDVNFGAGTLIANLRF----D-EKE--------------  338 (401)
T ss_dssp             CSSCEEEETCEEE-SEEECTTCEEEESCEEES-----CEECTTCEECTTCEECCSCT----T-CSC--------------
T ss_pred             CCCCEECCCCEEe-cCEEcCCcEECCCceEcc-----eEECCCcEECCCcEEcCccc----C-CCc--------------
Confidence            9999999999995 899999999999999976     99999999999999942110    0 001              


Q ss_pred             eEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE
Q 040779          183 VSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI  257 (300)
Q Consensus       183 ~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv  257 (300)
                                +.+.+++++.+...  ...++.||++++|+.++.+.++++||++++|+++++|.++  +++++++
T Consensus       339 ----------~~~~i~~~~~~~~~--~~~~v~Ig~~~~Ig~~~~I~~gv~Ig~~~vi~~gsvv~~~--vp~~~~v  399 (401)
T 2ggo_A          339 ----------VKVNVKGKRISSGR--RKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRD--VGYGEFF  399 (401)
T ss_dssp             ----------CEEEETTEEEECSC--SSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTCEE
T ss_pred             ----------eeEEECCceEEecc--cccCcEECCCeEECCCcEEcCCcEECCCcEECCCCeEccc--cCCCcEE
Confidence                      12233333333222  1245666666667777777777888888888888888865  6777765

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.82  E-value=8.9e-20  Score=150.14  Aligned_cols=60  Identities=25%  Similarity=0.459  Sum_probs=54.6

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-Eec
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGL  283 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~  283 (300)
                      +..+.++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+|||+ +++
T Consensus       126 ~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pa~vi~~i  186 (188)
T 3srt_A          126 GIEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKDIPPNTVAVGNPCRVIKKI  186 (188)
T ss_dssp             TEEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSCBCSSEEEETTTTEEEEEC
T ss_pred             cceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcccCCCCEEEccCCEEeccC
Confidence            445567899999999999999999999999999999999999999999999999995 444

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.82  E-value=4.1e-19  Score=166.12  Aligned_cols=122  Identities=20%  Similarity=0.270  Sum_probs=59.1

Q ss_pred             cEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEE
Q 040779          100 AKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEF  179 (300)
Q Consensus       100 ~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i  179 (300)
                      +.||+++.|++++.|.+++.||+++.|++++.+..     +.|++++.+++.+.++              ...||+++.|
T Consensus       326 ~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~-----~~Ig~~~~i~~~~~i~--------------~~~Ig~~~~I  386 (468)
T 1hm9_A          326 SSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKG-----SSIGENTKAGHLTYIG--------------NCEVGSNVNF  386 (468)
T ss_dssp             CEECTTCEECSSCEECSSCEECTTCEEEEEEEEES-----CEECTTCEEEEEEEEE--------------SEEECTTCEE
T ss_pred             cccCCCcEECCceEEecCcEECCccEECCCcEEee-----eEEcCCcEeCCceEEc--------------cccccCCcEE
Confidence            45555555555555555555555555555555543     5555555555544442              1344444444


Q ss_pred             CCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          180 REHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       180 ~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      +.++.+....-                 ...+.+.||++++|+.++.+..+++||++++||++++|.+  .+++++++.+
T Consensus       387 g~~~~i~~~~~-----------------~~~~~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~i~~~s~v~~--~v~~~~~~~G  447 (468)
T 1hm9_A          387 GAGTITVNYDG-----------------KNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITK--DVPADAIAIG  447 (468)
T ss_dssp             CTTCEEECBCS-----------------SCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECS--CBCTTCEECC
T ss_pred             CCCcEEecCcC-----------------ccCCCcEECCCeEECCCCEEeCCcEECCCCEECCCCEECC--CCCCCCEEEc
Confidence            44444321100                 0011344444444444455555555555555555555554  2555555544

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.81  E-value=3.4e-19  Score=147.48  Aligned_cols=71  Identities=18%  Similarity=0.324  Sum_probs=60.3

Q ss_pred             CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          210 AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       210 ~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      ++++.||+++.+.+++.+.++++||++++||.++++.++++|+++++|+++++|.+|+|+++++.|+|||.
T Consensus       123 ~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~v~~~~~~~G~Pa~~  193 (194)
T 3bfp_A          123 EHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAKR  193 (194)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEECCCCCCC
T ss_pred             cCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccccCCCCEEEeeccEE
Confidence            34455555555555666667889999999999999999999999999999999999999999999999973

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.80  E-value=5.6e-19  Score=146.19  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=52.5

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS  264 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~  264 (300)
                      ..+.||++++++.++.+. ++.||++++|+.++.+.++++||++|+||++++|.+++.|+|++++.+.....
T Consensus        84 ~~~~Ig~~~~i~~~~~i~-~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~svv~G~pa~~  154 (194)
T 3tv0_A           84 KPMIIGTNNVFEVGCYSQ-AMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTVIYGADCLR  154 (194)
T ss_dssp             CCEEECSSCEECTTCEEC-CSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEEEESTTCCE
T ss_pred             CceEECCcceEecceeEe-eeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCEEECCCcEE
Confidence            344555555555555543 56777777777788888888899999999999999999999999888765443

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.80  E-value=4.7e-19  Score=148.79  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV  273 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~  273 (300)
                      .+.||++++|+.++.|..++.||++++|+.++.+.+ ++||++++||++++| .+++|++++.|++++++.+        
T Consensus       111 ~~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~vv~~--------  180 (213)
T 3kwd_A          111 SVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QDVEIPPGKYVPSGMVITT--------  180 (213)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ESCEECTTBEECTTCEECS--------
T ss_pred             ceEECCCcEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CCcEeCCCCEECCCcEEcC--------
Confidence            455566666666666665566666666666666655 777777777777776 3566666666555554432        


Q ss_pred             eeeceE-EEecChhh
Q 040779          274 AGERAV-LRGLNLEG  287 (300)
Q Consensus       274 ~G~Pa~-~~~~~~~~  287 (300)
                       |.||+ +++++.+.
T Consensus       181 -g~pa~~i~~~~~~~  194 (213)
T 3kwd_A          181 -QQQADRLPNVEESD  194 (213)
T ss_dssp             -HHHHTTCCBCCHHH
T ss_pred             -CCCccccccCCHHH
Confidence             66776 44444443

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.80  E-value=1.4e-19  Score=152.76  Aligned_cols=58  Identities=22%  Similarity=0.344  Sum_probs=53.8

Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEe
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG  282 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~  282 (300)
                      ..+.++++||++||||.+++|.++++||++++|+++|+|++|+|++++++|+|||+.+
T Consensus       114 ~~~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir  171 (220)
T 4hur_A          114 LPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIR  171 (220)
T ss_dssp             SCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEE
T ss_pred             ccccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCCCCEeeh
Confidence            4466789999999999999999999999999999999999999999999999999543

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.79  E-value=8e-19  Score=147.38  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=26.7

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI  245 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v  245 (300)
                      +++||++++|+.++.+.. +.||++++|++++.+. +++|++++.+++++++
T Consensus       129 ~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V~-~~~i~~~~~v~~~~vv  178 (213)
T 3kwd_A          129 PAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLIQ-DVEIPPGKYVPSGMVI  178 (213)
T ss_dssp             EEEECTTCEECTTCEEEE-EEECTTCEECSSCEEE-SCEECTTBEECTTCEE
T ss_pred             CCEECCCCEECCCCEEeC-cEECCCCEEcCCCEEC-CcEeCCCCEECCCcEE
Confidence            456666666666666553 6666665555555552 3444444444444333

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.79  E-value=4e-19  Score=145.72  Aligned_cols=58  Identities=29%  Similarity=0.421  Sum_probs=53.5

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      +..+.++++||++||||++++|.++++|+++++|+++|+|++|+|++++++|+|||+.
T Consensus       124 ~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~vp~~~vv~G~Pa~vi  181 (185)
T 2p2o_A          124 GLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVI  181 (185)
T ss_dssp             CCBEECCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEE
T ss_pred             CccccCCeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEcccCEEe
Confidence            3445678999999999999999999999999999999999999999999999999953

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.77  E-value=4.8e-18  Score=147.79  Aligned_cols=147  Identities=20%  Similarity=0.260  Sum_probs=84.3

Q ss_pred             CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779           68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI  147 (300)
Q Consensus        68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~  147 (300)
                      .+..|+|++.|.+++.|++++.|+++ +|..++.||+++.|++++.|+++++||++|.|++++.+...            
T Consensus       103 ~g~~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~------------  169 (276)
T 3gos_A          103 EGFRVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV------------  169 (276)
T ss_dssp             HCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCC------------
T ss_pred             CCcEECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCc------------
Confidence            35566666666666666666666665 56656666666666655555555555555555555444320            


Q ss_pred             EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779          148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL  227 (300)
Q Consensus       148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v  227 (300)
                                .     .                        ....+++.||+                  +++|++++.+
T Consensus       170 ----------~-----~------------------------~~~~~~v~IGd------------------~v~IG~~a~I  192 (276)
T 3gos_A          170 ----------L-----E------------------------PLQANPTIIED------------------NCFVGARSEV  192 (276)
T ss_dssp             ----------C-----S------------------------STTSCCCEECT------------------TCEECTTCEE
T ss_pred             ----------c-----c------------------------cCCCCCeEECC------------------CCEECCCCEE
Confidence                      0     0                        00012333333                  3333444445


Q ss_pred             cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE-eee-c----------eEE-EecChhh
Q 040779          228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV-AGE-R----------AVL-RGLNLEG  287 (300)
Q Consensus       228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~-~G~-P----------a~~-~~~~~~~  287 (300)
                      .++++||++++||++++|.++++|++++   .+.+...++|+++++ .|+ |          |++ +++..+.
T Consensus       193 ~~gv~IG~~avIgagsvV~~~~~I~~~~---~~~~~~g~Vp~~svvv~G~~P~~~g~~~~~~A~iik~~~~~~  262 (276)
T 3gos_A          193 VEGVIVEEGSVISMGVFIGQSTRIYDRE---TGEVHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKT  262 (276)
T ss_dssp             CTTCEECTTCEECTTCEECTTCCEEETT---TCCEECSEECTTEEEEEEEEECTTSSCEEEEEEEEEECCC--
T ss_pred             CCCCEECCCCEECCCCEECCCcEEcccc---ccceeccccCCCcEEECCCccCCCCcccccccEEEEEcChhh
Confidence            5566777777777777777777777763   344666688888888 585 8          984 5555443

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.77  E-value=3.1e-18  Score=139.95  Aligned_cols=108  Identities=23%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.||+++.+..++.|.+    ...++||++|+|++++.|.......+...-..+..+.++++||++||||++++|.++++
T Consensus        73 v~IG~~~~I~~~~~i~~----~~~i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~  148 (182)
T 1ocx_A           73 IFLGNNFFANFDCVMLD----VCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVT  148 (182)
T ss_dssp             EEECSSEEECSSEEEEC----SSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCE
T ss_pred             EEECCCcEEeCCeEEEe----ccceEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcE
Confidence            44555555554444432    23455555555555555532211111000112333467899999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEe
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG  282 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~  282 (300)
                      ||++++|+++|+|++|+|++++++|+|||+.+
T Consensus       149 IG~~~vIgagsvV~~dip~~~vv~G~Pa~~i~  180 (182)
T 1ocx_A          149 IGDNVVVASGAVVTKDVPDNVVVGGNPARIIK  180 (182)
T ss_dssp             ECTTCEECTTCEECSCBCSSEEEETTTTEEEE
T ss_pred             ECCCCEECCCCEECCcCCCCcEEEccccEEec
Confidence            99999999999999999999999999999543

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.76  E-value=8.3e-19  Score=147.21  Aligned_cols=62  Identities=21%  Similarity=0.308  Sum_probs=56.5

Q ss_pred             EEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          220 IFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       220 ~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      .+..+..+.++++||++||||.+++|.++++|+++++|+++|+|++|+|++++++|+|||..
T Consensus       108 ~~~~~~~~~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~~G~Pa~~i  169 (219)
T 4e8l_A          108 PSLKDLPLKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFI  169 (219)
T ss_dssp             CCTTTSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEE
T ss_pred             cccccccccCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEEEecCCEee
Confidence            34445667789999999999999999999999999999999999999999999999999953

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.76  E-value=1.1e-17  Score=147.55  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=37.0

Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE-eee-c----------eE-
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV-AGE-R----------AV-  279 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~-~G~-P----------a~-  279 (300)
                      +.||++++|+.++.+.++++||++++||++++|.+++.|.+.+   .+.+...++|+++++ +|+ |          |+ 
T Consensus       219 v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t~I~d~~---~~~v~~g~Vp~gsvVvaGsvP~~~g~~~~~~A~i  295 (316)
T 3tk8_A          219 VIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRE---TGEVTYGRIPAGSVVVAGNLPAKDGTHSLYCAVI  295 (316)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETT---TCCEECSEECTTEEEEEEEEECTTSSCEEEEEEE
T ss_pred             cEECCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeeecccc---cccccccEeCCCCEEECCCCcCCcccccccceEE
Confidence            3344444444444444444455555555555555444444432   122333488999888 586 8          88 


Q ss_pred             EEecChhhhhh
Q 040779          280 LRGLNLEGLRR  290 (300)
Q Consensus       280 ~~~~~~~~~~~  290 (300)
                      ++++......+
T Consensus       296 ik~~~~~t~~~  306 (316)
T 3tk8_A          296 VKKVDAKTRAK  306 (316)
T ss_dssp             EEECCC-----
T ss_pred             EEECCccchhh
Confidence            45555554333

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.76  E-value=4.4e-19  Score=148.83  Aligned_cols=60  Identities=22%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             ccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          222 ANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       222 ~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      ..+..+.++++||++||||.+++|.++++||++++|+++|+|++|+|++++++|+|||..
T Consensus       103 ~~~~~~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv~G~PAk~i  162 (212)
T 3eev_A          103 RDGFTRSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHI  162 (212)
T ss_dssp             CCCCCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEE
T ss_pred             cCCcccCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEE
Confidence            345667789999999999999999999999999999999999999999999999999953

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.76  E-value=7.6e-18  Score=144.55  Aligned_cols=70  Identities=14%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS  264 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~  264 (300)
                      ..+.||++++|+.++.+..++.||++++|+.++.+.+ ++||++++||++++| ++++|+++++|++++++.
T Consensus       139 ~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-~~~~I~~~~~v~~g~vv~  208 (247)
T 1qre_A          139 YAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVT  208 (247)
T ss_dssp             ESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ESCEECTTBEECTTCEEC
T ss_pred             CceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-CCeEeCCCCEECCCCEEe
Confidence            3567777788888888777788888888888888888 999999999999999 888999999987777665

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.75  E-value=6.9e-18  Score=139.22  Aligned_cols=59  Identities=12%  Similarity=0.168  Sum_probs=46.2

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEc-cCCEECCCCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG-GGSVVSQDVPKY  270 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~-~~svv~~~v~~~  270 (300)
                      ++.||++++|+.++.+..+++||++++|+++++|.++..|++++++. ..+.+.+++++.
T Consensus       112 ~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~v~G~pa~~i~~~~~~  171 (191)
T 3ixc_A          112 ACTLGNNAFVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGELWAGRPAKFLRMMTEE  171 (191)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHH
T ss_pred             CCEECCCCEECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeEEECcCceecccCCHH
Confidence            35666666666677777788999999999999999999999999854 467777776653

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.75  E-value=1.2e-17  Score=135.61  Aligned_cols=60  Identities=10%  Similarity=0.192  Sum_probs=49.0

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE-ccCCEECCCCCCCc
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI-GGGSVVSQDVPKYS  271 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv-~~~svv~~~v~~~~  271 (300)
                      ++.||++++|++++.+.++++||++++|+++++|.++..|++++++ |..+.+.+++++..
T Consensus        90 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~~~~~~~~~  150 (173)
T 1xhd_A           90 SCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAED  150 (173)
T ss_dssp             SCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHH
T ss_pred             CCEECCCCEEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCCEEECCCCEECCCCCHHH
Confidence            3556666666667777778999999999999999999999999999 66799988887643

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.74  E-value=1.6e-17  Score=134.93  Aligned_cols=60  Identities=18%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE-ccCCEECCCCCCCc
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI-GGGSVVSQDVPKYS  271 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv-~~~svv~~~v~~~~  271 (300)
                      ++.||++++|+.++.+.++++||++++|+++++|.++..|++++++ |..+.+.+++++..
T Consensus        88 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~~v~G~pa~~~~~~~~~~  148 (173)
T 1v3w_A           88 GAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEE  148 (173)
T ss_dssp             SCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHH
T ss_pred             CCEECCCCEECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCcEEECcCCEEeccCCHHH
Confidence            4666666677777777778999999999999999999999999999 67788888887654

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.74  E-value=2.3e-17  Score=135.73  Aligned_cols=76  Identities=18%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779          193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK  269 (300)
Q Consensus       193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~  269 (300)
                      +.+.||++++|+.++.|. ++.||++++|+.++.+..+++||++++|+++++|.++..|++++++++ .+.+.+++++
T Consensus        86 ~~~~Ig~~~~Ig~~~~i~-~~~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~vv~G~pa~~i~~~~~  162 (189)
T 3r1w_A           86 YPLIIGDDVTIGHQAMLH-GCTIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGFVYMGTPAKKVRPITE  162 (189)
T ss_dssp             BCEEECSSEEECTTCEEE-SCEECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTEEEETTTTEEEEECCH
T ss_pred             CCeEECCCCEECCCCEEe-CcEECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCCEEECCccccccCCCH
Confidence            344555555555555554 377888888888888888999999999999999999999999999855 5777777654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.74  E-value=2.4e-17  Score=135.49  Aligned_cols=75  Identities=15%  Similarity=0.241  Sum_probs=56.4

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEc-cCCEECCCCCC
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG-GGSVVSQDVPK  269 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~-~~svv~~~v~~  269 (300)
                      .+.||++++|+.++.+ .++.||++++|+.++.+.++++||++++|+++++|.++..+++++++. ..+.+.+++++
T Consensus        83 ~~~Ig~~~~Ig~~~~i-~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~vv~G~pa~~i~~~~~  158 (187)
T 3r3r_A           83 PLIIGEDVTVGHKVML-HGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSD  158 (187)
T ss_dssp             CEEECSSCEECTTCEE-ESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEETTTTEEEEECCH
T ss_pred             CeEECCCCEECCCCEE-eCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcEEEecCCeEcCcCCH
Confidence            4444555555555544 347777778888888888889999999999999999999999999855 46777776654

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.73  E-value=2.2e-18  Score=143.85  Aligned_cols=64  Identities=19%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             ccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          218 YNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       218 ~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      .+.+..+..+.++++||++|+||.+++|.++++|+++++|+++|+|++|+|++++++|+|||..
T Consensus       101 ~~~i~~~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~v~~~~i~~G~Pa~~i  164 (209)
T 1mr7_A          101 HMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEI  164 (209)
T ss_dssp             GCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEE
T ss_pred             cccccccccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCCCCCCeEEEeeCCEEe
Confidence            3445556778889999999999999999999999999999999999999999999999999953

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.73  E-value=4.9e-17  Score=141.40  Aligned_cols=20  Identities=15%  Similarity=0.059  Sum_probs=10.2

Q ss_pred             CCCcEEccCCEECCCCCCCc
Q 040779          252 GSHSFIGGGSVVSQDVPKYS  271 (300)
Q Consensus       252 ~~~~vv~~~svv~~~v~~~~  271 (300)
                      +++......+++.+++++.+
T Consensus       243 ~~g~~~~~~A~iik~~~~~~  262 (276)
T 3gos_A          243 KDGSYSLYCAVIVKKVDAKT  262 (276)
T ss_dssp             TTSSCEEEEEEEEEECCC--
T ss_pred             CCCcccccccEEEEEcChhh
Confidence            44444445566766665543

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.72  E-value=2.3e-17  Score=142.68  Aligned_cols=108  Identities=20%  Similarity=0.225  Sum_probs=73.5

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.++.|+.+    .++.||+++.|++++.|.+++.|+.....    .-..+++||++|+||+++.|.++++
T Consensus       165 i~I~p~a~IG~~v~I~hg----~gvvIG~~~~IGd~v~I~~gvtIg~~~~~----~~~r~~~IGd~v~IGaga~Il~gv~  236 (287)
T 3mc4_A          165 TDIHPAARLGSGLFLDHA----TGLVVGETAVVEDNVSILHGVTLGGTGKS----SGDRHPKIRQGVLIGAGAKILGNIQ  236 (287)
T ss_dssp             CEECTTCEECSSCEEESC----TTCEECTTCEECSSCEEETTCEEEC---------CCCSCEECTTCEECTTCEEESSCE
T ss_pred             eEECCCCEECCCeEEccC----CCeEECCCeEECCCCEEcCCCEEcCCccc----CCCcCCEECCCCEECCCCEECCCcE
Confidence            455666666666666531    23444444444444444444444322110    0122489999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecChh
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLE  286 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~  286 (300)
                      ||++++||++|+|++|+|++++++|+|||+.+...+
T Consensus       237 IG~~a~IGagsvV~kdVp~~svvvG~PAkii~~~~~  272 (287)
T 3mc4_A          237 VGQCSKIAAGSVVLKSVPHNVTVAGVPARIIGETGC  272 (287)
T ss_dssp             ECTTCEECTTCEECSCBCTTEEEETTTTEEEEECC-
T ss_pred             ECCCCEECCCCEEccccCCCCEEEccCCEEeCcCCC
Confidence            999999999999999999999999999996554443

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.71  E-value=1.3e-16  Score=140.18  Aligned_cols=61  Identities=18%  Similarity=0.234  Sum_probs=53.7

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEee
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG  275 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G  275 (300)
                      .+.||++++|+.++.+.++++||++|+||++++|.++++|+++++   +....+++|+++++.+
T Consensus       202 ~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~~---g~~~~~~Ip~~svV~~  262 (304)
T 3eg4_A          202 PTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRAT---GEVFYGEVPPYSVVVA  262 (304)
T ss_dssp             CCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCCEEETTT---CCEECSEECTTEEEEE
T ss_pred             CeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCCeEECccce---eeeccCEeCCCCEEec
Confidence            688888888888888888999999999999999999999999984   6778889999999874

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.70  E-value=4e-17  Score=143.29  Aligned_cols=110  Identities=21%  Similarity=0.322  Sum_probs=67.1

Q ss_pred             eeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecC----ceEECCCcEECcCcEEcc
Q 040779          172 DVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG----HVVVEDYTHTAGAIVIHQ  247 (300)
Q Consensus       172 ~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~----~v~Ig~~~~ig~~~~v~~  247 (300)
                      .|+.++.|+.++.|+.    +.++.||+++.|++++.|.+++.||+++.+..++.+..    .++||++||||++++|.+
T Consensus       165 ~I~p~a~IG~~v~I~~----g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilg  240 (313)
T 3q1x_A          165 DIHPGASIKGHFFIDH----GVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLG  240 (313)
T ss_dssp             EECTTCEECSSCEESS----CTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEES
T ss_pred             EECCCCEECCCEEECC----CCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECC
Confidence            3344444444444432    12344444455555555555555555444444444433    469999999999999999


Q ss_pred             CcEECCCcEEccCCEECCCCCCCcEEe--eeceEE-EecCh
Q 040779          248 FCHIGSHSFIGGGSVVSQDVPKYSMVA--GERAVL-RGLNL  285 (300)
Q Consensus       248 ~~~I~~~~vv~~~svv~~~v~~~~~~~--G~Pa~~-~~~~~  285 (300)
                      +++||++++||++|+|++|+|+++++.  |+|||+ ++.+.
T Consensus       241 gv~IG~~a~IGagsvV~~dVp~gs~vvi~G~PAkvik~~~~  281 (313)
T 3q1x_A          241 NIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFVKPCTT  281 (313)
T ss_dssp             SCEECSSEEECTTCEECSCBCSSEEC---------------
T ss_pred             CcEECCCCEECCCCEECCCcCCCCEEEEcCCCcEEEeeCcc
Confidence            999999999999999999999999987  999995 44433

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.69  E-value=8.3e-17  Score=138.33  Aligned_cols=107  Identities=21%  Similarity=0.258  Sum_probs=75.0

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.+++|..+    .++.||+++.|++++.|.+++.++.....    .-..+++||++|+||++++|.++++
T Consensus       138 ~~I~p~a~IG~g~~I~~~----~~vvIG~~~~IG~~v~I~~gvtig~~~~~----~~~~~~~IGd~v~IGaga~Il~gv~  209 (267)
T 1ssq_A          138 VDIHPAAKIGHGIMFDHA----TGIVVGETSVIENDVSILQGVTLGGTGKE----SGDRHPKVREGVMIGAGAKILGNIE  209 (267)
T ss_dssp             CEECTTCEECSSCEESSC----TTCEECTTCEECTTCEECTTCEEECCSSS----CSSCSCEECTTCEECTTCEEESSCE
T ss_pred             eEeCCCCEECCCEEECCC----CceEECCeeEECCCCEEcCCcEECCCccc----CCCCCeEECCCeEEcCCCEEeCCcE
Confidence            455666666666666532    24455555555555555554444432110    0123589999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL  285 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~  285 (300)
                      ||++++||++|+|++|+|+++++.|+|||+.+.+.
T Consensus       210 IG~~a~IGagsvV~~dVp~~~~v~G~PAr~i~~~~  244 (267)
T 1ssq_A          210 VGKYAKIGANSVVLNPVPEYATAAGVPARIVSQDK  244 (267)
T ss_dssp             ECTTCEECTTCEECSCBCTTCEEETTTTEECC---
T ss_pred             ECCCCEECCCCEEccCCCCCCEEEecCcEEeccCC
Confidence            99999999999999999999999999999755444

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.69  E-value=1.5e-16  Score=140.39  Aligned_cols=119  Identities=14%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             CCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779           67 SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN  146 (300)
Q Consensus        67 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~  146 (300)
                      +.++.|+|+++|.+++.||+++.|+++ .|..++.||+++.|..++.|++++.||++|+|++++.|...           
T Consensus       143 ~~~~~I~p~a~I~~~~~IG~g~~I~~~-~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~-----------  210 (316)
T 3tk8_A          143 AGGFRVVPPAIARRGSFIAKNVVLMPS-YTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGV-----------  210 (316)
T ss_dssp             HHCCEECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCC-----------
T ss_pred             cCCcEEeCCeEEeCCcEEcCCCEECCC-EEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCC-----------
Confidence            345566666666666666666666655 55555556666665555555555555555555555444321           


Q ss_pred             EEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCce
Q 040779          147 IIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTL  226 (300)
Q Consensus       147 ~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~  226 (300)
                                 ...                             ....++.||++|+|+.++.|.+++.||++++|++++.
T Consensus       211 -----------~~~-----------------------------~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsv  250 (316)
T 3tk8_A          211 -----------LEP-----------------------------LQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVY  250 (316)
T ss_dssp             -----------CSS-----------------------------TTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             -----------ccc-----------------------------ccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCE
Confidence                       000                             0134667777777777777777777777777777666


Q ss_pred             ecCceEECCCc
Q 040779          227 LAGHVVVEDYT  237 (300)
Q Consensus       227 v~~~v~Ig~~~  237 (300)
                      +..++.|++.+
T Consensus       251 V~~~t~I~d~~  261 (316)
T 3tk8_A          251 LGQSTKIYDRE  261 (316)
T ss_dssp             ECTTCCEEETT
T ss_pred             EcCCeeecccc
Confidence            66666666654

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.68  E-value=1.7e-16  Score=137.49  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=80.1

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.++.|..+    .++.||+++.|++++.|.+++.|+.....    .-..+++||++|+||+++.|.++++
T Consensus       158 ~~I~p~a~IG~gv~I~~g----~gvvIG~~~~IG~~v~I~~gvtLg~~~~~----~~~~~~~IGd~v~IGaga~Ilggv~  229 (289)
T 1t3d_A          158 VDIHPAAKIGRGIMLDHA----TGIVVGETAVIENDVSILQSVTLGGTGKS----GGDRHPKIREGVMIGAGAKILGNIE  229 (289)
T ss_dssp             CEECTTCEECSSCEECSC----TTCEECTTCEECSSCEECTTCEEECCSSS----CSSCSCEECTTCEECTTCEEESSCE
T ss_pred             eEEcCCCEEcCCEEECCC----CceEECCCcEECCCCEEcCCcEECCCccc----cCCCCeEECCCeEECCCCEEecCcE
Confidence            456666777776666542    35566666666555555555555532111    0134689999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL  285 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~  285 (300)
                      ||++++|+++|+|++|+|+++++.|+|||+.+.+.
T Consensus       230 IG~~a~IGagsvV~~dVp~~s~v~G~PAr~i~~~~  264 (289)
T 1t3d_A          230 VGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPD  264 (289)
T ss_dssp             ECTTCEECTTCEECSCBCTTCEEETTTTEEEECCS
T ss_pred             ECCCCEECCCCEEccCCCCCCEEEecCCEEeCcCC
Confidence            99999999999999999999999999999765544

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.68  E-value=1.2e-16  Score=140.00  Aligned_cols=108  Identities=20%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc-----eecCceEECCCcEECcCcEE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT-----LLAGHVVVEDYTHTAGAIVI  245 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~-----~v~~~v~Ig~~~~ig~~~~v  245 (300)
                      +.|+.++.|+.++.|+.    +.++.||+++.|++++.|++++.|+..+......     ....+++||++||||++++|
T Consensus       191 v~I~p~a~IG~~v~I~h----g~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~I  266 (310)
T 3f1x_A          191 IDIHPGAQIGHHFTIDH----GTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATI  266 (310)
T ss_dssp             CEECTTCEECSSCEEES----CTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEE
T ss_pred             cEECCCCEECCCcEECC----CCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEE
Confidence            44555666666655533    2344455554444444444444444433211110     34456799999999999999


Q ss_pred             ccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEe
Q 040779          246 HQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG  282 (300)
Q Consensus       246 ~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~  282 (300)
                      .++++||++++||++|+|++|+|++++++|+|||..+
T Consensus       267 l~gv~IGd~a~IGagsvV~~dVp~~svv~GnPAk~~~  303 (310)
T 3f1x_A          267 LGRVTIGKGATVGGNIWVTENVPAGSRIVQRKNKDEL  303 (310)
T ss_dssp             ESSCEECTTCEECSSCEECSCBCTTCEECCCCCC---
T ss_pred             CCCcEECCCCEECCCCEECCccCCCcEEECCCcccCC
Confidence            9999999999999999999999999999999998543

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.68  E-value=1.5e-16  Score=132.60  Aligned_cols=147  Identities=13%  Similarity=0.182  Sum_probs=82.5

Q ss_pred             eeCCCceECCCcEEcC--CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeC---CcEECCCcEEccCcEEccCCCCc
Q 040779           65 SSSSSSFIHPTSIVHP--NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFG---NTELGDHCILMTGAVVGDDLPGQ  139 (300)
Q Consensus        65 ~i~~~~~I~~~~~I~~--~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~---~~~IG~~~~I~~~~~i~~~~~~~  139 (300)
                      .+++++.|+++++|.+  ++.||+++.|++++.|.+++.||++|.|++++.|.+   +++||++|.|++++.|..     
T Consensus        34 ~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~-----  108 (205)
T 3vbi_A           34 SVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYA-----  108 (205)
T ss_dssp             EECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEES-----
T ss_pred             EECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEe-----
Confidence            4666777777777765  667777777777777766666666666666666632   255555555555555532     


Q ss_pred             eeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCcc
Q 040779          140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYN  219 (300)
Q Consensus       140 ~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~  219 (300)
                                       ...++....      ..+                   ....+     ........++.||+++
T Consensus       109 -----------------~~~~~~~~~------~~~-------------------~~~~~-----~~~~~~~~~v~IG~~v  141 (205)
T 3vbi_A          109 -----------------AIDDFSGNA------LMG-------------------PTIPN-----QYKNVKTGKVILKKHV  141 (205)
T ss_dssp             -----------------EECCCSSSS------CCS-------------------TTSCG-----GGCCCEECCEEECTTC
T ss_pred             -----------------CCCCccccc------ccC-------------------ccccc-----ccceeccCCEEECCCC
Confidence                             111110000      000                   00000     0011122445555556


Q ss_pred             EEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECC
Q 040779          220 IFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQ  265 (300)
Q Consensus       220 ~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~  265 (300)
                      +|+.++.+..+++||++|+||++++|.++  +++++++.+. +.+.+
T Consensus       142 ~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~--v~~~~v~~G~Pa~~i~  186 (205)
T 3vbi_A          142 IIGAHSIIFPNVVIGEGVAVGAMSMVKES--LDDWYIYVGVPVRKIK  186 (205)
T ss_dssp             EECTTCEECSSCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             EECCCCEEcCCCEECCCCEEcCCCEECCc--cCCCeEEEccCCEEee
Confidence            66666666677778888888888888876  6788776653 44433

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.67  E-value=9.6e-16  Score=131.42  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE-CCCCCCCcEE
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV-SQDVPKYSMV  273 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv-~~~v~~~~~~  273 (300)
                      .++.||+++.|++++.+.++++||++|+||.+++|.+ ++|+++++|+++++| ..++|+++++
T Consensus       139 ~~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV~~~~I~~~~~v  201 (247)
T 1qre_A          139 YAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAIGVTIPDGRYI  201 (247)
T ss_dssp             ESEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEESCEECTTBEE
T ss_pred             CceEECCCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEECCeEeCCCCEE
Confidence            4577777777777888888899999999999999998 999999999999999 2234555443

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.67  E-value=8.3e-16  Score=144.94  Aligned_cols=167  Identities=14%  Similarity=0.189  Sum_probs=120.4

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCC-----EECC----CcEECCCCEECCCcEEeCCcEECCCc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFC-----TIGS----AAKLGDGCLLYPSSHIFGNTELGDHC  124 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~-----~I~~----~~~Ig~~~~I~~~~~I~~~~~IG~~~  124 (300)
                      +.....|++.+.|.+++.+...+.++.++.|+.++.+...+     .+..    +..+++++.+++++.+..++.|++++
T Consensus       280 i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v  359 (501)
T 3st8_A          280 IDVDVTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADG  359 (501)
T ss_dssp             ECTTCEECTTCEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTC
T ss_pred             ccCceEECCcceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEcccc
Confidence            56666677777777777776666666666666666654322     2211    34578899999999999999999999


Q ss_pred             EEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEc
Q 040779          125 ILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIM  204 (300)
Q Consensus       125 ~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~  204 (300)
                      .|+.++.+..     ++||+++.+++.++++.              ..||+++.|+++                  +.+.
T Consensus       360 ~IG~~v~ik~-----s~Ig~gskI~~~~~i~d--------------~~Ig~~v~IG~g------------------~i~~  402 (501)
T 3st8_A          360 KLGAFVEVKN-----STIGTGTKVPHLTYVGD--------------ADIGEYSNIGAS------------------SVFV  402 (501)
T ss_dssp             EEEETEEEES-----CEECTTCEEEESCEEES--------------EEECSSCEECTT------------------CEEE
T ss_pred             ccCCeEEEcc-----ceecCCcEEeccceecC--------------ceEcCCCEECCC------------------EEEE
Confidence            9999999987     89999999998888842              334444444433                  3333


Q ss_pred             cccEE-CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          205 GSCHI-AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       205 ~~~~i-~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                      .+..+ .+.+.||++++|+.++.+..+++||++++||++++|.++  |++++++-+
T Consensus       403 n~dg~~~~~t~IGd~~~iG~~~~l~~~v~Ig~~~~i~ags~v~~d--vp~~~l~~~  456 (501)
T 3st8_A          403 NYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALAVS  456 (501)
T ss_dssp             CBCSSSBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECC
T ss_pred             cccCCcccCCEECCCcEECCCCEEcCCcEECCCCEECCCCEECcc--cCCCCeEEe
Confidence            32222 235778888888888899999999999999999999986  789986433

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=99.65  E-value=8.3e-16  Score=128.28  Aligned_cols=59  Identities=22%  Similarity=0.317  Sum_probs=54.8

Q ss_pred             cCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       223 ~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      .++.+.++++||++||||.+++|.++++|+++++|+++|+|++|+|++++++|+|||+.
T Consensus       103 ~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~vp~~~~~~G~Pa~~i  161 (212)
T 1xat_A          103 NGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTI  161 (212)
T ss_dssp             CCCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEE
T ss_pred             cCceecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcccCCCCcEEEccCCEEE
Confidence            45566788999999999999999999999999999999999999999999999999953

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.64  E-value=1.7e-16  Score=147.50  Aligned_cols=50  Identities=16%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             ceEECCCcEECcCcEEc--cCcEECCCcEEccCCEECC--CCCCCcEEeeeceEEE
Q 040779          230 HVVVEDYTHTAGAIVIH--QFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAVLR  281 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~--~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~~~  281 (300)
                      .++||++|+||++++|.  ++..|++++++++ + +..  +++.+.+..|.|++++
T Consensus       364 ~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G-~-v~~~~~l~~~~~~~~~~~~i~  417 (496)
T 3c8v_A          364 PLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWG-Y-IRNKADLAAHSISFEEFAKVD  417 (496)
T ss_dssp             CEEECTTCEECTTCEEECSSCEEECSSEEECS-E-ESSHHHHHHSEEEHHHHTTCE
T ss_pred             ceEECCCCEECCCCEEecCCCcEeCCCCEEEE-E-eccCccccccccccccHHHHH
Confidence            48888999999999998  8889999999984 3 433  3578889999998843

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.62  E-value=1.3e-14  Score=119.87  Aligned_cols=63  Identities=29%  Similarity=0.530  Sum_probs=42.6

Q ss_pred             ceECCCcEEcCCCEEC--CCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           70 SFIHPTSIVHPNAIIG--QGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig--~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      ..|+|.+++.+++.||  +++.|++++.|+.+++||+++.|++++.|++++.||++|+|++++.+
T Consensus        76 ~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i  140 (194)
T 3bfp_A           76 NLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKC  140 (194)
T ss_dssp             CEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence            5667777777777777  77777777777777777777777666666555555555555554444

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.62  E-value=1.1e-14  Score=122.61  Aligned_cols=63  Identities=25%  Similarity=0.467  Sum_probs=42.1

Q ss_pred             ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      +.+++.+.+.+++.|++++.|++++.|+.++.||++|.|++++.|.+++.||++|+|++++.+
T Consensus       100 ~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i  162 (220)
T 4ea9_A          100 NAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASAL  162 (220)
T ss_dssp             CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence            567777777777777777777777777777777777666666666555555555555544444

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.62  E-value=6.1e-16  Score=133.68  Aligned_cols=52  Identities=10%  Similarity=0.137  Sum_probs=27.3

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC----------CCCCcEEeeeceEEEecC
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD----------VPKYSMVAGERAVLRGLN  284 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~----------v~~~~~~~G~Pa~~~~~~  284 (300)
                      ++||++||||++++|  +++|+++|+|++|++|++|          +|...+++++|+++++-.
T Consensus       234 V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a~el~g~~~~~f~r~s  295 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKARELSGSSNLLFRRNS  295 (332)
T ss_dssp             CEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEGGGGTTCSSEEEEECT
T ss_pred             eEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEhHHhcCCCCCEEEecC
Confidence            444444444444444  4444444444444444444          255667778888876444

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.59  E-value=2.8e-15  Score=139.48  Aligned_cols=63  Identities=19%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             eEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       195 ~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      +.||+++++. +++|+++++||+++++.++..+.+..+||+++|||+++     ++|+++++|+++|+|
T Consensus       389 ~~Ig~~~~i~-~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          389 IGIGKNCHIK-RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII  451 (451)
T ss_dssp             SEECTTCEEE-SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             EEECCCCEEe-ccEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCccC
Confidence            4455555553 36666777777777777766666666899999999887     789999999999875

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.59  E-value=4.3e-15  Score=127.69  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=35.8

Q ss_pred             CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          210 AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       210 ~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ..++.||++++|++++.+..+++||++++||++++|.++  +++++++.+.
T Consensus       161 ~~~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~--vp~~~~~~G~  209 (252)
T 3jqy_B          161 AKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD--VPSMCAAAGN  209 (252)
T ss_dssp             CCCEEECSSCEECSSEEECTTCEECTTCEECTTCEECSC--BCTTEEEEET
T ss_pred             cCCeEEecCcEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEcc
Confidence            345566666666667777777888888888888888875  7888877654

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.58  E-value=4e-15  Score=138.39  Aligned_cols=58  Identities=16%  Similarity=0.165  Sum_probs=43.9

Q ss_pred             eEECCCcEECcCcEEccC----cEECCCcEEccCCEEC----CCCCCCcEEeeeceEEEecChhhhhhcCC
Q 040779          231 VVVEDYTHTAGAIVIHQF----CHIGSHSFIGGGSVVS----QDVPKYSMVAGERAVLRGLNLEGLRRRGF  293 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~----~~I~~~~vv~~~svv~----~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~  293 (300)
                      ++||++|+||++++|.++    ++|+++++||++++|.    +++|+++++.|..     .+...+++.++
T Consensus       343 v~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~G~v-----~~~~~l~~~~~  408 (496)
T 3c8v_A          343 AHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVWGYI-----RNKADLAAHSI  408 (496)
T ss_dssp             EEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEECSEE-----SSHHHHHHSEE
T ss_pred             ceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEEEEe-----ccCcccccccc
Confidence            677777888888888887    8899999999999988    6789998888862     24444444444

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.56  E-value=5.7e-15  Score=128.59  Aligned_cols=37  Identities=11%  Similarity=0.094  Sum_probs=30.5

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV  267 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v  267 (300)
                      ++++||++||||++++|  +++||++|+|++|++|++|.
T Consensus       255 ~~V~IGdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt  291 (347)
T 3r5d_A          255 IVISVGEGCLIGANAGI--GIPLGDRNIVEAGLYITAGT  291 (347)
T ss_dssp             CCCEECTTCEECTTCEE--CSCBCTTCEECTTCEECTTC
T ss_pred             cceEECCCCEECCCCEE--eeEECCCCEECCCCEECCCC
Confidence            46888888888888888  78888888888888888773

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.56  E-value=1.3e-14  Score=125.33  Aligned_cols=46  Identities=11%  Similarity=0.143  Sum_probs=22.4

Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEE--CCCcEEccC
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI--GSHSFIGGG  260 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I--~~~~vv~~~  260 (300)
                      +.||++++|+.++.+  ++.||++|+||++++|.++++|  +++.++.++
T Consensus       234 V~IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~I~~~~g~~v~a~  281 (332)
T 3fsy_A          234 ISIGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTRVTMPDSNSVKAR  281 (332)
T ss_dssp             CEECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCEEECTTSCEEEGG
T ss_pred             eEECCCCEECCCCEE--eeEECCCCEECCCCEECCCCEEEeCCCCEEEhH
Confidence            344444444444444  4555555555555555555444  344444443

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.54  E-value=1.8e-14  Score=126.37  Aligned_cols=73  Identities=10%  Similarity=0.186  Sum_probs=30.3

Q ss_pred             EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE---ccCCEECCCCCCCcEEeeeceEEEecChhhhh
Q 040779          214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI---GGGSVVSQDVPKYSMVAGERAVLRGLNLEGLR  289 (300)
Q Consensus       214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv---~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~  289 (300)
                      .||++++|++++.+.++++||++++||++++|.++  +++++++   |..+.+.+++++.. ....|.+++..+..++.
T Consensus       225 ~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~d--Vp~gs~vvi~G~PAkvik~~~~~~-~k~~~~~l~~i~~~~~~  300 (313)
T 3q1x_A          225 TVGDYVTIGTGAKVLGNIIVGSHVRIGANCWIDRD--VDSNQTVYISEHPTHFVKPCTTKG-MKNDTEIIAIIPSSPLA  300 (313)
T ss_dssp             EECSSCEECTTCEEESSCEECSSEEECTTCEECSC--BCSSEEC-----------------------------------
T ss_pred             EECCCCEECCCCEECCCcEECCCCEECCCCEECCC--cCCCCEEEEcCCCcEEEeeCcccc-cccchhhhccCCCcccc
Confidence            44445555555666678888888999999999887  6677776   77899999887663 23445556666555544

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.53  E-value=2.5e-14  Score=124.52  Aligned_cols=68  Identities=18%  Similarity=0.024  Sum_probs=44.0

Q ss_pred             ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779           64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG  133 (300)
Q Consensus        64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~  133 (300)
                      ..+++++.|+|.++|.+++.||+++.|+++++|..++.||++|.|..++.++  +.||++|.|++++.|.
T Consensus       179 ~vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~ig--v~IGdnv~IgpGa~Ig  246 (347)
T 3r5d_A          179 YVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAG--VFVGKGSDLGGGCSTM  246 (347)
T ss_dssp             TCCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTT--CEECTTEEECTTCEEC
T ss_pred             eeccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEe--EEECCCCEECCCCEEc
Confidence            3456677777777777777777777777777777666666666666555442  5566666666655554

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.51  E-value=8.5e-14  Score=114.49  Aligned_cols=55  Identities=20%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVP  268 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~  268 (300)
                      .+.||++++|++++.+..+++||++++||++++|.++  +++++++.+ .+.+.+.++
T Consensus       134 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~  189 (190)
T 3hjj_A          134 PVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD--VPNNVVVGGNPAKVIKTIE  189 (190)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            4444555555555666667777777777777777765  677777665 366655543

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.48  E-value=7.3e-14  Score=115.34  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVP  268 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~  268 (300)
                      .+.||++++|+.++.+..+++||++++||++++|.++  +++++++.+ .+.+.+.+.
T Consensus       132 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~~i~~~~  187 (195)
T 3nz2_A          132 PIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD--VPPDTLVGGTPARILRSLK  187 (195)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEEEECC
T ss_pred             CeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEccCCEEecccC
Confidence            3444444445555555666777777778888887765  677777655 466665553

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.47  E-value=1.1e-12  Score=111.74  Aligned_cols=69  Identities=23%  Similarity=0.405  Sum_probs=51.4

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD  134 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  134 (300)
                      .+.++.|+|++.|.+++.||+++.|++++.|..++.||++|.|++++.|+++++||++|+|++++.+.+
T Consensus        88 ~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~  156 (240)
T 3r8y_A           88 KGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAG  156 (240)
T ss_dssp             TTCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECC
T ss_pred             cCCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECC
Confidence            356677788888877888888888888888877777777777777777776777777777776666643

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.47  E-value=7.3e-14  Score=125.02  Aligned_cols=44  Identities=11%  Similarity=0.082  Sum_probs=36.5

Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEee
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG  275 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G  275 (300)
                      .+++||++||||.+++  ++++|+++++|+++++|++|+|.+.+ .|
T Consensus       289 ~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~dv~i~~~-~G  332 (387)
T 2rij_A          289 NAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEGTKFLLK-DA  332 (387)
T ss_dssp             CBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTTCEEEEC-CH
T ss_pred             cCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCCceeeec-CC
Confidence            3578888888888888  78889999999999999998887766 66

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.45  E-value=6.7e-13  Score=111.24  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=33.7

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEc
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG  258 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~  258 (300)
                      .++.||++++|+.++.+..+++||++++|+++++|.++  ++++++++
T Consensus       136 ~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~~--vp~~~i~~  181 (215)
T 2wlg_A          136 KDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKS--FKEPNCVI  181 (215)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECSSCEECTTCEECSC--CCCCSCEE
T ss_pred             CCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcCc--cCCCeEEE
Confidence            34555666666666666777888888888888888875  68888877

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.44  E-value=2.8e-13  Score=112.15  Aligned_cols=58  Identities=17%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCCC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPKY  270 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~~  270 (300)
                      ..+.||++++|+.++.+..+++||++++||++++|.++  +++++++.+ .+.+.+.+.+.
T Consensus       129 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pak~i~~~~~~  187 (199)
T 3ftt_A          129 GPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKD--IPPHSLAVGNPCKVVRKIDND  187 (199)
T ss_dssp             CCEEECSSEEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCCC
T ss_pred             CCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcc--cCCCCEEEEECCEEEeeCChh
Confidence            34455555555556666677888888888888888875  688888765 47776665443

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.42  E-value=5.1e-13  Score=110.64  Aligned_cols=56  Identities=14%  Similarity=0.219  Sum_probs=39.1

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVP  268 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~  268 (300)
                      ..+.||++++|++++.+..+++||++++||++++|.++  |++++++++ .+.+.+++.
T Consensus       130 ~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--vp~~~vv~G~PArvik~~~  186 (203)
T 1krr_A          130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREIN  186 (203)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECC
T ss_pred             CCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCC--cCCCcEEEccCcEEeccCC
Confidence            34555555555556666667888888888888888876  788888655 477766653

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.41  E-value=2.2e-13  Score=111.36  Aligned_cols=55  Identities=16%  Similarity=0.257  Sum_probs=38.5

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCCC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQDV  267 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~v  267 (300)
                      ..+.||++++|++++.+..+++||++++||++++|.++  |+++++++++ +.+.+++
T Consensus       129 ~~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~--vp~~~vv~G~Pa~vi~~i  184 (185)
T 2p2o_A          129 KPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD--VPANAVVGGNPAKVIKWL  184 (185)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEEEC
T ss_pred             CCeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEcccCEEeeec
Confidence            34455555555555666667788888888888888876  7888888876 6665543

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.40  E-value=8e-13  Score=108.44  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=34.6

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVP  268 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~  268 (300)
                      .+.||++++|+.++.+..+++||++++||++++|.++  +++++++.+ .+.+.+.++
T Consensus       132 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~~i~  187 (188)
T 3srt_A          132 PVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIKKIE  187 (188)
T ss_dssp             CEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEEECC
T ss_pred             CcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEeccCC
Confidence            3444444444555555566777777777788877765  567766554 476666554

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.37  E-value=2.1e-12  Score=105.20  Aligned_cols=48  Identities=19%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      .++.||++++|++++.+..+++||++++||++++|.++  |++++++++.
T Consensus       127 ~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d--ip~~~vv~G~  174 (182)
T 1ocx_A          127 KPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN  174 (182)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETT
T ss_pred             CCeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc--CCCCcEEEcc
Confidence            34555555555556666667777888888888888775  7888777664

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.29  E-value=6e-12  Score=116.97  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=24.5

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI  245 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v  245 (300)
                      ++.||+++.+..+..+..+..||++++|++++     ++||++++|+++++|
T Consensus       405 ~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~~-----v~Ig~~a~i~agsvv  451 (451)
T 1yp2_A          405 NARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII  451 (451)
T ss_dssp             TCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             CcEECCCCEEeCCcccccCceeCCCEEEcCCE-----EEECCCcEECCCccC
Confidence            33333333333333332233555555555544     677777777777653

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.24  E-value=9.9e-11  Score=102.48  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=18.1

Q ss_pred             EECCCcEEccCcEEccCCCCceeeccceEEccccEEe
Q 040779          119 ELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG  155 (300)
Q Consensus       119 ~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~  155 (300)
                      +||++|.|+.++.|..    .++||+++.|++++++.
T Consensus       253 ~IGd~V~IGaga~Il~----gv~IGd~a~IGagsvV~  285 (310)
T 3f1x_A          253 ILEDDVIVYSNATILG----RVTIGKGATVGGNIWVT  285 (310)
T ss_dssp             EECTTCEECTTCEEES----SCEECTTCEECSSCEEC
T ss_pred             EECCCcEEcCCCEECC----CcEECCCCEECCCCEEC
Confidence            5555555555555543    25555555555555553

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.24  E-value=5.7e-12  Score=105.93  Aligned_cols=52  Identities=21%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEEC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVS  264 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~  264 (300)
                      .++.||++++|+.++.+..+++||++++||++++|.++  +++++++++. +.+.
T Consensus       118 g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d--Vp~~~vv~G~PAk~i  170 (220)
T 4hur_A          118 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKFI  170 (220)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred             CCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc--CCCCcEEeCCCCEee
Confidence            44555555555556666667788888888888888875  6888887664 4443

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.23  E-value=9.5e-11  Score=101.33  Aligned_cols=77  Identities=23%  Similarity=0.340  Sum_probs=47.9

Q ss_pred             eecCccceeCCCceEC--CCcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779           58 YGDKYETSSSSSSFIH--PTSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCILM  127 (300)
Q Consensus        58 ~~i~~~~~i~~~~~I~--~~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~  127 (300)
                      ..|++.+.|+++++|+  .++.|++++.||++|.|++++.|++.        ++||++|+|++++.|.++++||++|.|+
T Consensus       165 i~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a~IG  244 (287)
T 3mc4_A          165 TDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIA  244 (287)
T ss_dssp             CEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTCEEC
T ss_pred             eEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCCEEC
Confidence            3556666666666665  55666666666666666666666543        5666666666666666666666666666


Q ss_pred             cCcEEcc
Q 040779          128 TGAVVGD  134 (300)
Q Consensus       128 ~~~~i~~  134 (300)
                      .++++..
T Consensus       245 agsvV~k  251 (287)
T 3mc4_A          245 AGSVVLK  251 (287)
T ss_dssp             TTCEECS
T ss_pred             CCCEEcc
Confidence            6666654

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.21  E-value=1.9e-10  Score=98.75  Aligned_cols=79  Identities=19%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEE
Q 040779           57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCIL  126 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I  126 (300)
                      ...|++.+.||++++|++  ++.|++++.||++|.|++++.|++.        ++||++|+|++++.|.++++||++|.|
T Consensus       137 g~~I~p~a~IG~g~~I~~~~~vvIG~~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~~a~I  216 (267)
T 1ssq_A          137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKI  216 (267)
T ss_dssp             SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred             ceEeCCCCEECCCEEECCCCceEECCeeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECCCCEE
Confidence            446677777777777773  5677777777777777777777653        577777777777777777777777777


Q ss_pred             ccCcEEccC
Q 040779          127 MTGAVVGDD  135 (300)
Q Consensus       127 ~~~~~i~~~  135 (300)
                      +.++++..+
T Consensus       217 GagsvV~~d  225 (267)
T 1ssq_A          217 GANSVVLNP  225 (267)
T ss_dssp             CTTCEECSC
T ss_pred             CCCCEEccC
Confidence            777777653

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.20  E-value=5.6e-12  Score=105.40  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             ECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEEC
Q 040779          209 IAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVS  264 (300)
Q Consensus       209 i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~  264 (300)
                      +..++.||++++|+.++.+.++++||++|+||++++|.++  +++++++++. +.+.
T Consensus       108 ~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~d--Vp~~~vv~G~PAk~i  162 (212)
T 3eev_A          108 RSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKD--VAPYEVVGSNPAKHI  162 (212)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred             cCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEecCCEEE
Confidence            3455666666666777777778888888888888888865  7888887654 5443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.18  E-value=3.4e-10  Score=98.01  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=59.0

Q ss_pred             ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEE
Q 040779           57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCIL  126 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I  126 (300)
                      ...|++.+.|+++++|++  ++.|++++.||++|.|++++.|++.        ++||++++|++++.|.++++||++|.|
T Consensus       157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~I  236 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKI  236 (289)
T ss_dssp             SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred             ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEE
Confidence            456777777888888873  5777777778888888777777753        677777777777777777777777777


Q ss_pred             ccCcEEccC
Q 040779          127 MTGAVVGDD  135 (300)
Q Consensus       127 ~~~~~i~~~  135 (300)
                      +.++++..+
T Consensus       237 GagsvV~~d  245 (289)
T 1t3d_A          237 GAGSVVLQP  245 (289)
T ss_dssp             CTTCEECSC
T ss_pred             CCCCEEccC
Confidence            777777653

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.14  E-value=4.8e-11  Score=99.90  Aligned_cols=52  Identities=21%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEE
Q 040779          210 AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVV  263 (300)
Q Consensus       210 ~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv  263 (300)
                      ..++.||++++|+.++.+.++++||++++||++++|.++  +++++++++. +.+
T Consensus       116 ~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~d--v~~~~~~~G~Pa~~  168 (219)
T 4e8l_A          116 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN--VAPYSIVGGNPLKF  168 (219)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEE
T ss_pred             cCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCeEEEecCCEe
Confidence            345666666666666777777888888888888888875  6888887653 443

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=99.06  E-value=4.5e-11  Score=99.44  Aligned_cols=53  Identities=23%  Similarity=0.231  Sum_probs=37.6

Q ss_pred             ccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          206 SCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       206 ~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      ++.+..++.||++++|+.++.+..+++||++++|+++++|.++  +++++++++.
T Consensus       107 ~~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~~--v~~~~i~~G~  159 (209)
T 1mr7_A          107 QLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGN  159 (209)
T ss_dssp             GSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEET
T ss_pred             cccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcCC--CCCCeEEEee
Confidence            3344455666666666666777777888888888888888875  6888877654

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.04  E-value=5.8e-10  Score=99.83  Aligned_cols=104  Identities=18%  Similarity=0.247  Sum_probs=81.4

Q ss_pred             CCceECCCcEEcCCCEECCCCEECCC-CEECCCcE-ECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC----CCcee
Q 040779           68 SSSFIHPTSIVHPNAIIGQGVSVGPF-CTIGSAAK-LGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL----PGQTV  141 (300)
Q Consensus        68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~-~~I~~~~~-Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~----~~~~~  141 (300)
                      .+++|++++.|.+++.||+++.|+++ ++|+.++. ||+ |.|..  .|+++++||++|.|++++.|....    ...++
T Consensus       216 ~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~nv~vIG~-~~I~~--~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~Vv  292 (387)
T 2rij_A          216 DNTRILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGA-CMVEG--RISSSAIVGEGSDVGGGASILGVLSGTSGNAIS  292 (387)
T ss_dssp             TTCEESCGGGBBTTCBCCTTCEECSSSCEECTTCEESSC-CEECS--EECTTCEECTTCEECTTCEECCBCSSTTCCBCE
T ss_pred             CCEEEcCCCEECCCeEEcCCCEEeCCeeEECCCcEEECC-EEEee--EECCCCEECCCCEECCCceEcceecCCCccCeE
Confidence            47788888888888888888888886 88888888 888 88864  788888899999999888754322    22378


Q ss_pred             eccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCC
Q 040779          142 FGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS  189 (300)
Q Consensus       142 Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~  189 (300)
                      ||++|.||+++.-               .+.||+++.|++++++.+++
T Consensus       293 IGdnv~IGagAv~---------------GV~IGdgavIGAGsVVt~dv  325 (387)
T 2rij_A          293 VGKACLLGANSVT---------------GIPLGDNCIVDAGIAVLEGT  325 (387)
T ss_dssp             ECTTCEECTTCEE---------------CSCBCTTCEECTTCEECTTC
T ss_pred             EeCCCEECCCCcC---------------CcEECCCCEECCCCEECCCc
Confidence            8888888888871               27899999999998886533

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.97  E-value=1.5e-09  Score=99.91  Aligned_cols=67  Identities=13%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEe
Q 040779           81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG  155 (300)
Q Consensus        81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~  155 (300)
                      ++.||++|.| +++.|. ++.||++|.|++++.|. +++||++|.|++++.|.+     ++||+++.|++++.+.
T Consensus       324 ~~~ig~~~~I-~~~~i~-~~~ig~~~~I~~~~~i~-~~~i~~~~~i~~~~~i~~-----~~ig~~~~i~~~~~i~  390 (420)
T 3brk_X          324 SSVVSGDCII-SGAALN-RSLLFTGVRANSYSRLE-NAVVLPSVKIGRHAQLSN-----VVIDHGVVIPEGLIVG  390 (420)
T ss_dssp             SCEECSSCEE-ESCEEE-SCEECTTCEECTTCEEE-EEEECTTCEECTTCEEEE-----EEECTTCEECTTCEES
T ss_pred             CCEECCCCEE-cCCEEe-CcEEcCCCEECCCCEEc-ceEEcCCCEECCCCEEec-----eEECCCCEECCCCEEe
Confidence            6667777777 666665 57777777777777776 677777777777777765     7777777777777664

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.85  E-value=7.6e-09  Score=86.03  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEEC
Q 040779          210 AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVS  264 (300)
Q Consensus       210 ~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~  264 (300)
                      ...+.||++++|+.++.+..+++||++++||++++|.++  +++++++++. +.+.
T Consensus       108 ~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~~--vp~~~~~~G~Pa~~i  161 (212)
T 1xat_A          108 AGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTI  161 (212)
T ss_dssp             CCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEE
T ss_pred             cCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--CCCCcEEEccCCEEE
Confidence            345566666666667777777888888888888888875  7888877653 4443

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=98.73  E-value=2.8e-08  Score=91.37  Aligned_cols=54  Identities=13%  Similarity=0.118  Sum_probs=36.8

Q ss_pred             CCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           93 FCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        93 ~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      ++.+ .++.||++|.| +++.|. ++.||++|+|++++.|.+     ++|++++.|++++.|
T Consensus       319 ~~~i-~~~~ig~~~~I-~~~~i~-~~~ig~~~~I~~~~~i~~-----~~i~~~~~i~~~~~i  372 (420)
T 3brk_X          319 RGSA-VSSVVSGDCII-SGAALN-RSLLFTGVRANSYSRLEN-----AVVLPSVKIGRHAQL  372 (420)
T ss_dssp             BCEE-ESCEECSSCEE-ESCEEE-SCEECTTCEECTTCEEEE-----EEECTTCEECTTCEE
T ss_pred             CcEe-cCCEECCCCEE-cCCEEe-CcEEcCCCEECCCCEEcc-----eEEcCCCEECCCCEE
Confidence            4555 36666666766 666665 677888888888777765     666666666666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	300
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	1e-37
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	0.001
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	0.002
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	0.004
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	6e-26
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	8e-23
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	8e-20
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	5e-18
d1krra_	200	b.81.1.3 (A:) Galactoside acetyltransferase {Esche	2e-16
d1ocxa_	182	b.81.1.3 (A:) Maltose O-acetyltransferase {Escheri	7e-16
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	6e-14
d1xata_	208	b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudo	0.004
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	4e-12
d1mr7a_	203	b.81.1.3 (A:) Xenobiotic acetyltransferase {Entero	0.003
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	6e-09
d1qrea_	210	b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon M	3e-08
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	7e-09
d1ssqa_	241	b.81.1.6 (A:) Serine acetyltransferase {Haemophilu	6e-04
d3bswa1	193	b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylo	1e-08
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	2e-08
d3tdta_	274	b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytra	2e-07
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	3e-07
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	4e-04
d1xhda_	172	b.81.1.5 (A:) Putative acetyltransferase/acyltrans	3e-05
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	7e-05
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	0.003
d1yp2a1	135	b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt	4e-04

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score =  132 bits (332), Expect = 1e-37
 Identities = 91/229 (39%), Positives = 127/229 (55%), Gaps = 24/229 (10%)

Query: 67  SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCIL 126
             S+F+HPT+IV   A IG    +GPFC +G   ++G+G +L     + G+T        
Sbjct: 3   DKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHT-------- 54

Query: 127 MTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIH 186
                           G +N I   A +G   QD+KY   +   V++G+ N  RE V+IH
Sbjct: 55  --------------KIGRDNEIYQFASIGEVNQDLKYAG-EPTRVEIGDRNRIRESVTIH 99

Query: 187 RSSKSGDR-TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVI 245
           R +  G   T +G +NL+M + HIAHDC +GN  I ANN  LAGHV V+D+    G   +
Sbjct: 100 RGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAV 159

Query: 246 HQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
           HQFC IG+H  +GG S V+QDVP Y +  G  A   G+N+EGL+RRGF+
Sbjct: 160 HQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFS 208

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 20/84 (23%), Positives = 33/84 (39%)

Query: 185 IHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIV 244
           I +S+      ++ +   I  + HI   C +G +      T+L  HVVV  +T       
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 245 IHQFCHIGSHSFIGGGSVVSQDVP 268
           I+QF  IG  +     +     V 
Sbjct: 62  IYQFASIGEVNQDLKYAGEPTRVE 85

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 8/95 (8%), Positives = 28/95 (29%)

Query: 173 VGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVV 232
           +  +        +   +  G    IG   ++     I     + ++ +   +T +     
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 233 VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV 267
           +  +          ++    +   IG  + + + V
Sbjct: 62  IYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESV 96

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 4/116 (3%)

Query: 56  HVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF 115
            V          S +    T        +G    +     I     +G+ C+L  ++ + 
Sbjct: 83  RVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLA 142

Query: 116 GNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFV 171
           G+  + D  I+     V        + G + ++G  + V           G+    
Sbjct: 143 GHVSVDDFAIIGGMTAV----HQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATP 194

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score =  101 bits (251), Expect = 6e-26
 Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 22/225 (9%)

Query: 70  SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129
           S I  T+I+ P A I +GV +G FC IG   KL +G  L+ +  + G+T +G +  +   
Sbjct: 1   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 60

Query: 130 AVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           AV+G                         QD+KYK      +   +N      +    + 
Sbjct: 61  AVLGTQ----------------------PQDLKYKGEYSELIIGEDNLIREFCMINPGTE 98

Query: 190 KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249
               +T+IGD NL+M   H+AHDC IG++ I AN   LAGH+ + DY +  G   IHQF 
Sbjct: 99  GGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFV 158

Query: 250 HIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFN 294
            I     I G S + +DVP Y  V G RA +RGLN   +R+   +
Sbjct: 159 RIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQLLES 203

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 94.1 bits (233), Expect = 8e-23
 Identities = 32/258 (12%), Positives = 69/258 (26%), Gaps = 48/258 (18%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCL-----------------LYPSSHI 114
               ++      I     +   CT+ +  ++GD                    +  SS  
Sbjct: 60  YDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVR 119

Query: 115 FGNTELGDHCILMTGAVVGDD----------------------LPGQTVFGCNNIIGHHA 152
                 GD  +L    ++                         +  Q     N  I H  
Sbjct: 120 EECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAF 179

Query: 153 VVGVKCQDMKYKSGDECFVDVGN--------NNEFREHVSIHRSSKSGDRTVIGDNNLIM 204
           +              +   +V          +                  + + ++ LI 
Sbjct: 180 IEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIE 239

Query: 205 GSCHIAHDCKIGNY-NIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263
           G+C + H   +G +  +     LL   V++E +    G I+I +   I   + +      
Sbjct: 240 GNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDN 299

Query: 264 SQDVPKYSMVAGERAVLR 281
           +  +    ++ GE  + R
Sbjct: 300 TIHLRGPKVINGEDRITR 317

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 83.2 bits (204), Expect = 8e-20
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 22/207 (10%)

Query: 70  SFIHPTSI-VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128
           SF++P +  +  +  I   V +    T+    K+G   +L   +++           +  
Sbjct: 2   SFVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-------DSTIGA 54

Query: 129 GAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRS 188
           GAV+ + +  ++      I+G +                              +    + 
Sbjct: 55  GAVITNSMIEESSVADGVIVGPY--------------AHIRPNSSLGAQVHIGNFVEVKG 100

Query: 189 SKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQF 248
           S  G+ T  G    I      ++            +       V+ +         I   
Sbjct: 101 SSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGNNVFVGSNSTIIAP 160

Query: 249 CHIGSHSFIGGGSVVSQDVPKYSMVAG 275
             +G +S +G GS +++DVP  ++  G
Sbjct: 161 VELGDNSLVGAGSTITKDVPADAIAIG 187

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 78.5 bits (192), Expect = 5e-18
 Identities = 27/198 (13%), Positives = 52/198 (26%), Gaps = 7/198 (3%)

Query: 94  CTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAV 153
             +      G    +  +  I GN  LG    + TG V+ + + G         +     
Sbjct: 9   FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED-- 66

Query: 154 VGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC 213
                                          +        +     +   +G   I  + 
Sbjct: 67  -ANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNV 125

Query: 214 KIGNYNIFANNT-LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM 272
            IG   I  N         ++ D         +     +G  + I  G+ V+++V + ++
Sbjct: 126 NIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENAL 185

Query: 273 VAGERAVLRGLNLEGLRR 290
               R        EG RR
Sbjct: 186 AIS-RV--PQTQKEGWRR 200

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} Length = 200

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 73.7 bits (180), Expect = 2e-16
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 169 CFVDVGNNNEFREHVSIHRSS--KSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTL 226
            +   G+N     +   + +          IGDN LI  +  ++      ++ +  N  +
Sbjct: 67  VYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEM 126

Query: 227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLE 286
            +  + + +       +VI+    IG +S IG GS+V++D+P   + AG    +     +
Sbjct: 127 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREIND 186

Query: 287 GLRRRGF 293
             +   F
Sbjct: 187 RDKHYYF 193

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} Length = 182

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 169 CFVDVGNNNEFREHVSIHRSSKSGDR--TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTL 226
              D G N     +   +      D     IGDN ++    HI       +     +   
Sbjct: 65  FRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAE 124

Query: 227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA 278
           L   V + +     G  VI+    IG +  +  G+VV++DVP   +V G  A
Sbjct: 125 LGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPA 176

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 67.1 bits (163), Expect = 6e-14
 Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 31/165 (18%)

Query: 117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNN 176
           N  +G +              G +   C   +                  D   + +G+ 
Sbjct: 20  NIRVGRYSY------YSGYYHGHSFDDCARYLMPDR-------------DDVDKLVIGSF 60

Query: 177 NEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIF---ANNTLLAGHVVV 233
                  +             G+               +     F    N    AG  ++
Sbjct: 61  CSIGSGAAFIM---------AGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLI 111

Query: 234 EDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA 278
                     +      +G  + IG  ++V+ DV  Y++V G  A
Sbjct: 112 GHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPA 156

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} Length = 208

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.5 bits (81), Expect = 0.004
 Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 8/121 (6%)

Query: 55  PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHI 114
            + Y   Y       SF      + P+      + +G FC+IGS A            H 
Sbjct: 25  RYSYYSGYY---HGHSFDDCARYLMPDRDDVDKLVIGSFCSIGSGAAFIMAG---NQGHR 78

Query: 115 FGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKY-KSGDECFVDV 173
                      +         + G    G + +IGH   +G +   M   + G    +  
Sbjct: 79  AEWASTFPFHFMHEEPAFAGAVNGYQPAG-DTLIGHEVWIGTEAMFMPGVRVGHGAIIGS 137

Query: 174 G 174
            
Sbjct: 138 R 138

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 62.2 bits (150), Expect = 4e-12
 Identities = 22/204 (10%), Positives = 51/204 (25%), Gaps = 47/204 (23%)

Query: 75  TSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD 134
              ++P         + P        ++G+       +    +                 
Sbjct: 5   PMKMYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFD----------------- 47

Query: 135 DLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDR 194
                       I+ H+ ++  K             + +G        V+I  +      
Sbjct: 48  ----------KQILYHYPILNDK-------------LKIGKFCSIGPGVTIIMNGA---- 80

Query: 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSH 254
               D +                +    +   + G  ++ +       +VI     IG  
Sbjct: 81  NHRMDGSTYP---FNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDG 137

Query: 255 SFIGGGSVVSQDVPKYSMVAGERA 278
           + +   SVV +D+  Y +  G  A
Sbjct: 138 AIVAANSVVVKDIAPYMLAGGNPA 161

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} Length = 203

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)

Query: 37  PCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTI 96
           P   + S  F++ +   L +V   +Y    S +       I++   I+   + +G FC+I
Sbjct: 10  PIEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSI 69

Query: 97  GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV 156
           G     G   ++  ++H    +    +            L    + G + IIG+   +G 
Sbjct: 70  GP----GVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKG-DTIIGNDVWIGK 124

Query: 157 KCQ 159
              
Sbjct: 125 DVV 127

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 53.1 bits (126), Expect = 6e-09
 Identities = 23/177 (12%), Positives = 49/177 (27%), Gaps = 16/177 (9%)

Query: 92  PFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH 151
           P+    SA  +     + P + + G   +G + ++   A +  D       G  + +   
Sbjct: 15  PWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDG 74

Query: 152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAH 211
            V+                ++  N        +I           IG+N  +     +  
Sbjct: 75  VVL--------------HALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHG 120

Query: 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVP 268
              +G+         +    V  +      +  I     I    +I  G VV+    
Sbjct: 121 PAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIG--VTIPDGRYIPAGMVVTSQAE 175

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} Length = 210

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 8/145 (5%)

Query: 69  SSFIHPTSIVHPNAIIGQGVSVGPFCTI----GSAAKLGDGCLLYPSSHIFGNTELGDHC 124
           +++I P + V     IG  V V P  +I    G    +GD   +     +     + +  
Sbjct: 28  TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEG 87

Query: 125 ILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVS 184
             +   +V  D     V+  NN+   H         +   +       V  +      V 
Sbjct: 88  EPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVL 147

Query: 185 IHRSSKSG----DRTVIGDNNLIMG 205
             RS+  G    D   I    ++  
Sbjct: 148 EPRSAAIGVTIPDGRYIPAGMVVTS 172

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 53.2 bits (127), Expect = 7e-09
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 169 CFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA 228
             VD+    +    +    +       V+G+ ++I            G            
Sbjct: 136 FDVDIHPAAKIGHGIMFDHA----TGIVVGETSVIENDVS----ILQGVTLGGTGKESGD 187

Query: 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
            H  V +         I     +G ++ IG  SVV   VP+Y+  AG
Sbjct: 188 RHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAG 234

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} Length = 241

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 71  FIHPTSIVHPNAIIGQGVSVGPFCTIGSA--AKLGDGCLLYPSSHIFGNTELGDHCILMT 128
            +  TS++  +  I QGV++G           K+ +G ++   + I GN E+G +  +  
Sbjct: 159 VVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGA 218

Query: 129 GAVVGDDLP-GQTVFG 143
            +VV + +P   T  G
Sbjct: 219 NSVVLNPVPEYATAAG 234

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} Length = 193

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 17/107 (15%), Positives = 37/107 (34%)

Query: 169 CFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA 228
             +      E    + I        +  I    ++  S  I H+C IG ++  +     A
Sbjct: 81  ALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCA 140

Query: 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275
           G+V +           +     +   S +GGG+ + ++  +  +  G
Sbjct: 141 GNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVG 187

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 72  IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTE--------LGDH 123
           +   S V+  A + +G  V  + T+GS A++G    L     I G  E        + D+
Sbjct: 122 VLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 181

Query: 124 CILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKC 158
           C +   + V + +          I+   +V+ +  
Sbjct: 182 CFIGARSEVVEGV----------IVEEGSVISMGV 206

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} Length = 274

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 195 TVIGDNNLIMGSCHIAHDCKIG-NYNIFANNTLL-------AGHVVVEDYTHTAGAIVIH 246
             + +  ++     +    +IG N ++     +        A   ++ED         + 
Sbjct: 132 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVV 191

Query: 247 QFCHIGSHSFIGGGSVVSQDVPKYSMVAGE 276
           +   +   S I  G  + Q    Y    GE
Sbjct: 192 EGVIVEEGSVISMGVYLGQSTRIYDRETGE 221

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 19/158 (12%)

Query: 93  FCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHA 152
           +   G   ++     +  ++ + G+  L +   +                   + +    
Sbjct: 4   YEINGKKPRIHPSAFVDENAVVIGDVVLEEKTSVW-----------------PSAVLRGD 46

Query: 153 VVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD 212
           +  +          +                     +       +G+  +I  S  I   
Sbjct: 47  IEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDG 106

Query: 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAG--AIVIHQF 248
            KIG++ I     ++  +  + DY+   G    V+ Q 
Sbjct: 107 AKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQL 144

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 27/144 (18%)

Query: 174 GNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCK------------------- 214
           G          +  ++      V+ +   +  S  +  D +                   
Sbjct: 8   GKKPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTS 67

Query: 215 -----IGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DV 267
                     +   +  +     V +Y     + VI     IG H  IG G+VV    ++
Sbjct: 68  HGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEI 127

Query: 268 PKYSMVAGERA-VLRGLNLEGLRR 290
           P YS+V G    V+R L  E +  
Sbjct: 128 PDYSLVLGVPGKVVRQLTEEEIEW 151

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} Length = 172

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 16/164 (9%), Positives = 39/164 (23%), Gaps = 35/164 (21%)

Query: 96  IGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155
                K+     +     I G+  +G+                      N +I       
Sbjct: 9   KEKKPKIASSAFIADYVTITGDVYVGEESS----------------IWFNTVIRGDVSPT 52

Query: 156 VKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKI 215
           +    +  +                               ++ D+  +     +      
Sbjct: 53  IIGDRVNVQDQCTLHQSPQYP------------------LILEDDVTVGHQVILHSCHIK 94

Query: 216 GNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259
            +  I   + +L G  + E     AG+ ++ Q   I  ++   G
Sbjct: 95  KDALIGMGSIILDGAEIGEGAFIGAGS-LVSQGKKIPPNTLAFG 137

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (89), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 7/81 (8%)

Query: 70  SFIHPTSI-VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128
               P    +      G+ V +     I     LG    +     +  N+ +GD C +  
Sbjct: 2   MLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGC-VIKNSVIGDDCEISP 60

Query: 129 GAVVGDDLPGQTVFGCNNIIG 149
             VV D             IG
Sbjct: 61  YTVVED-----ANLAAACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.6 bits (77), Expect = 0.003
 Identities = 12/66 (18%), Positives = 21/66 (31%)

Query: 94  CTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAV 153
             +      G    +  +  I GN  LG    + TG V+ + + G         +   A 
Sbjct: 9   FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDAN 68

Query: 154 VGVKCQ 159
           +   C 
Sbjct: 69  LAAACT 74

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 16/139 (11%)

Query: 136 LPGQTVFGC---NNIIGHHAVVG---VKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSS 189
           LP   +      +++IG   V+    +    +  +S       + ++           + 
Sbjct: 2   LPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAD 61

Query: 190 KSGDRTVIGDN-----NLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIV 244
           +               N  +    I  + +IG+     N   +       D       IV
Sbjct: 62  RKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIV 121

Query: 245 IHQFCHIGSHSFIGGGSVV 263
                 +   + I  G ++
Sbjct: 122 T-----VIKDALIPSGIII 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	300
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	100.0
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	100.0
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.96
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.93
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.93
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.92
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.9
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.88
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.88
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.87
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.85
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.84
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.83
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.82
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.81
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.77
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	99.74
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.7
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.67
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.67
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.62
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.62
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.59
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.59
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.51
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.46
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.45
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.43
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.42
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.42
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.41
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.4
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.04
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.98

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=100.00  E-value=3.3e-37  Score=265.23  Aligned_cols=210  Identities=43%  Similarity=0.778  Sum_probs=184.1

Q ss_pred             eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779           66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN  145 (300)
Q Consensus        66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~  145 (300)
                      |+++++|||+|.|+++++||+++.|+|+|+|+++++||++|.|++++.|++++.+|+++.+.+++.+...          
T Consensus         2 i~~~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~----------   71 (262)
T d2jf2a1           2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEV----------   71 (262)
T ss_dssp             BCTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEEC----------
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeeccccee----------
Confidence            5678889999999999999999999999999999999999999988888888888888888777777542          


Q ss_pred             eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCC-ceEECCCCEEccccEECcCcEeCCccEEccC
Q 040779          146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGD-RTVIGDNNLIMGSCHIAHDCKIGNYNIFANN  224 (300)
Q Consensus       146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~-~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~  224 (300)
                                  .+.+.+. .....+.||+++.+++++.+++++.... .+.||+++.++.++.|++++.||++++++++
T Consensus        72 ------------~~~~~~~-~~~~~v~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~  138 (262)
T d2jf2a1          72 ------------NQDLKYA-GEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANN  138 (262)
T ss_dssp             ------------CCCTTCC-SCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTT
T ss_pred             ------------ecccccc-ccCceEEECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCc
Confidence                        1111111 1234578999999999999988776443 4899999999999999999999999999999


Q ss_pred             ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779          225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED  298 (300)
Q Consensus       225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~  298 (300)
                      +.+.+.++||+++++|+++.+.++++|+++++|+++|+|++|+|+++++.|+|||..+.|...|++++|.++..
T Consensus       139 ~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~Vtkdvp~~~~~~G~PA~~~~~n~~gl~R~g~~~e~i  212 (262)
T d2jf2a1         139 ATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAI  212 (262)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSBBCTTEEEEEBTEEEEEECHHHHHHTTCCHHHH
T ss_pred             cccccceeeCceEEeccCceeccccEeehhceeeccceEeecCCcccccCCCCceeeeeeccchhhcCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988753

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=7.5e-36  Score=256.72  Aligned_cols=203  Identities=37%  Similarity=0.636  Sum_probs=166.3

Q ss_pred             eECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779           71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH  150 (300)
Q Consensus        71 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~  150 (300)
                      .|||+|.|++++.|++++.|||+|+|++++.|+++++|++++.|.+++.||+++.+.++++|+.+    .....      
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~----~~~~~------   71 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQ----PQDLK------   71 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCC----CSCSS------
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCC----Ccccc------
Confidence            46777777777778888888888888878888888888887777777777777777777776542    11111      


Q ss_pred             ccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecC
Q 040779          151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG  229 (300)
Q Consensus       151 ~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~  229 (300)
                                  + ......+.+|+++.+++++.+....... ..+.||++++++.++.+++++.+|+++.+..++.+.+
T Consensus        72 ------------~-~~~~~~~~ig~~~~i~~~~~i~~~~~~~~~~t~iG~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~g  138 (259)
T d1j2za_          72 ------------Y-KGEYSELIIGEDNLIREFCMINPGTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAG  138 (259)
T ss_dssp             ------------C-CSCCCEEEECSSCEECTTCEECCCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECT
T ss_pred             ------------c-ccccceEEeccccccccccccccccccccccccccCceEEeccccccceecccceeeeeccccccc
Confidence                        1 1122346677777777777776655433 5789999999999999999999999999999999999


Q ss_pred             ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCccc
Q 040779          230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE  297 (300)
Q Consensus       230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~  297 (300)
                      +++||++||||.++.|.++++||++++|+++|+|++|+|+++++.|+|||++++|.+.||+ +|+.++
T Consensus       139 ~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kdVp~~~i~~G~PA~~~g~n~~~lr~-~~~~~~  205 (259)
T d1j2za_         139 HIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKDVPPYCTVEGNRAFIRGLNRHRMRQ-LLESKD  205 (259)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEECSBBCTTEEEETTBTEEEEECHHHHHH-HSCHHH
T ss_pred             cccccccceecceeeeecccEeccceeeeeeeeeccccccceeEEecccccccchhhhhcc-ccchHH
Confidence            9999999999999999999999999999999999999999999999999999999999966 676654

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.96  E-value=3.8e-29  Score=205.54  Aligned_cols=182  Identities=19%  Similarity=0.269  Sum_probs=113.9

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG  138 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~  138 (300)
                      +|+++++|++++.|+|++.|+++++||++|.|+++++|. ++.||+++.|..+ .+. ...+++++.|++++.+..    
T Consensus        10 ~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~-~~~IG~~~~I~~~-~i~-~~~~g~~~~Ig~~~~i~~----   82 (196)
T d1g97a1          10 YIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVV-DSTIGAGAVITNS-MIE-ESSVADGVIVGPYAHIRP----   82 (196)
T ss_dssp             EECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEE-SCEECTTCEECSC-EEE-SCEECTTCEECSSCEECS----
T ss_pred             EECCCcEECCCCEECCCCEECCCcEECCCceEcCceEee-eeecccCcccccc-cee-eccccCcceeecceeccc----
Confidence            455556666666666666665555666666665555554 4555555555432 222 344555555555555443    


Q ss_pred             ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCc
Q 040779          139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNY  218 (300)
Q Consensus       139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~  218 (300)
                      .+.++.++.++..+.+.                                ...+...+.++++++++. +.+..++.++.+
T Consensus        83 ~~~i~~~~~i~~~~~~~--------------------------------~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~  129 (196)
T d1g97a1          83 NSSLGAQVHIGNFVEVK--------------------------------GSSIGENTKAGHLTYIGN-CEVGSNVNFGAG  129 (196)
T ss_dssp             SCEECTTCEEEEEEEEE--------------------------------SCEECTTCEEEEEEEEES-EEECSSCEECTT
T ss_pred             ccccccceeecccccce--------------------------------eeecCcceEecceEEecc-eeecceeecCCC
Confidence            24444444444433331                                111133344444444432 333445555555


Q ss_pred             cEEcc-CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779          219 NIFAN-NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL  280 (300)
Q Consensus       219 ~~i~~-~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~  280 (300)
                      +.... .....++++||+++|+|.++.++++++||++++|+++|+|+||+|++++++|+|||+
T Consensus       130 ~v~~~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkdvp~~~i~~G~Pak~  192 (196)
T d1g97a1         130 TITVNYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQI  192 (196)
T ss_dssp             CEEECBSSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEECCCCCCC
T ss_pred             eEEeecceeeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcCcCCCCEEEecCCEE
Confidence            54433 444678999999999999999999999999999999999999999999999999984

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.93  E-value=8.7e-25  Score=187.12  Aligned_cols=187  Identities=13%  Similarity=0.154  Sum_probs=144.1

Q ss_pred             cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      ++|+++.|+|+|+|++++.|+|+|+|++++.|++++.|++++.|.++++||+++.|++++.|+.......+...      
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~~Ig~~~~~~~~~~~------   75 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGE------   75 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSC------
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCccEECCCCcccccccc------
Confidence            47788888888888888888888888888888888888888888877777777777776666544433333222      


Q ss_pred             ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC
Q 040779          133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD  212 (300)
Q Consensus       133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~  212 (300)
                          .....+++++.+++++.+....      ........||+++.+..++.+      ++++.+|+++.+..++.+..+
T Consensus        76 ----~~~~~ig~~~~i~~~~~i~~~~------~~~~~~t~iG~~~~i~~~~~i------~~~~~ig~~~~i~~~~~i~g~  139 (259)
T d1j2za_          76 ----YSELIIGEDNLIREFCMINPGT------EGGIKKTLIGDKNLLMAYVHV------AHDCVIGSHCILANGVTLAGH  139 (259)
T ss_dssp             ----CCEEEECSSCEECTTCEECCCC------TTTTSEEEECSSCEECTTCEE------CTTCEECSSCEECTTCEECTT
T ss_pred             ----cceEEecccccccccccccccc------ccccccccccCceEEeccccc------cceecccceeeeecccccccc
Confidence                1236777788888887774321      112234566666666666665      789999999999999999999


Q ss_pred             cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEE
Q 040779          213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVV  263 (300)
Q Consensus       213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv  263 (300)
                      +.||++++|+.++.+..++.||++++||++++|.++  |++++++.+. +.+
T Consensus       140 v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV~kd--Vp~~~i~~G~PA~~  189 (259)
T d1j2za_         140 IEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD--VPPYCTVEGNRAFI  189 (259)
T ss_dssp             CEECSSCEECTTCEECTTCEECTTCEECTTCEECSB--BCTTEEEETTBTEE
T ss_pred             ccccccceecceeeeecccEeccceeeeeeeeeccc--cccceeEEeccccc
Confidence            999999999999999999999999999999999986  7999988764 554

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-24  Score=179.40  Aligned_cols=191  Identities=17%  Similarity=0.267  Sum_probs=130.9

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      ...|+++++||+++.|+|++.|++++.||++++|++++.|+ +..++.++.+...+... ++.+++++.++.++.+..  
T Consensus         8 ~~~i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~-~~~~~~~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~--   83 (201)
T d2oi6a1           8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVE-DANLAAACTIGPFARLRP--   83 (201)
T ss_dssp             GEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEE-SCEECTTCEECSSEEECT--
T ss_pred             eEEECceEEECCCCEECCCCEECCceEECCCcEECCCEEEe-eeccCCceeeeeeeccc-ccccccccccCccccccc--
Confidence            34678888888888888888888888888888888888887 55666666776666665 667777777777766654  


Q ss_pred             CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeC
Q 040779          137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG  216 (300)
Q Consensus       137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig  216 (300)
                        ...+++.+.++....++.              ..+|+++.+++.+.+                   .++.+++++.++
T Consensus        84 --~~~~~~~~~i~~~~~~~~--------------~~ig~~~~i~~~~~~-------------------~~~~~~~~~~i~  128 (201)
T d2oi6a1          84 --GAELLEGAHVGNFVEMKK--------------ARLGKGSKAGHLTYL-------------------GDAEIGDNVNIG  128 (201)
T ss_dssp             --TCEECTTCEEEEEEEEEE--------------EEECTTCEEEEEEEE-------------------EEEEECTTCEEC
T ss_pred             --ceeeeeeeeecceeeeee--------------eeeCCCeEEceeeee-------------------cccCcCcccccc
Confidence              245555555555444421              223333333222221                   123333444444


Q ss_pred             CccEEccCc-eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEee-eceEEEecChhhhhh
Q 040779          217 NYNIFANNT-LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG-ERAVLRGLNLEGLRR  290 (300)
Q Consensus       217 ~~~~i~~~~-~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G-~Pa~~~~~~~~~~~~  290 (300)
                      .++...... ....++.|++++|+|.++.+.++++|+++++|+++|+|++|+|+++++.| .||    ++++.|||
T Consensus       129 ~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kdVp~~si~vg~~~~----~~~~~~~r  200 (201)
T d2oi6a1         129 AGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQ----TQKEGWRR  200 (201)
T ss_dssp             TTCEEECBSSSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSCBCTTCEECCCCCC----CCCTTCCC
T ss_pred             CceeEeecccccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeeecCCCCEEEecccc----eEccCcCC
Confidence            444333222 34557999999999999999999999999999999999999999998555 676    55667765

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.92  E-value=1.3e-24  Score=186.01  Aligned_cols=187  Identities=14%  Similarity=0.184  Sum_probs=124.7

Q ss_pred             cceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc--CCCCce
Q 040779           63 ETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD--DLPGQT  140 (300)
Q Consensus        63 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~--~~~~~~  140 (300)
                      ++.|++.+.|++++.|++++.|+++|.|++++.|+.++.|+++++|+.++.++.++.+..++.++.......  ...+.+
T Consensus         5 ~~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~ig~~~~i~~~~~~~~~~~~~~~~~~~~~v   84 (262)
T d2jf2a1           5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRV   84 (262)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSEEEECSSCEECTTCEEEECCCCTTCCSCCCEE
T ss_pred             CCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEcCCccccccceeeeecccceeeccccccccCceE
Confidence            333334444444444444444444444444444444444444444444444444555555555544333221  113457


Q ss_pred             eeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccE
Q 040779          141 VFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNI  220 (300)
Q Consensus       141 ~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~  220 (300)
                      .||+++.+++++.+.+..      ........||+++.+..+++|      ++++.||+++++++++.+...+.||++++
T Consensus        85 ~IG~~v~ig~~~~i~~~~------~~~~~~T~IG~~~~i~~~~~I------~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~  152 (262)
T d2jf2a1          85 EIGDRNRIRESVTIHRGT------VQGGGLTKVGSDNLLMINAHI------AHDCTVGNRCILANNATLAGHVSVDDFAI  152 (262)
T ss_dssp             EECSSCEECTTCEEECCC------TTTTSEEEECSSCEECTTCEE------CTTCEECSSCEECTTCEECTTCEECTTCE
T ss_pred             EECCeeeecceEeccCcc------ccCccceEECCCCEEeccccc------ccccccCCCeeecCccccccceeeCceEE
Confidence            899999999999995432      111223567777777666666      78999999999999999999999999999


Q ss_pred             EccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEE
Q 040779          221 FANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVV  263 (300)
Q Consensus       221 i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv  263 (300)
                      ++.++.+..+++||+++++++++.|.++  +++++++.+ .+..
T Consensus       153 ig~~~~i~~~v~IG~~a~igagS~Vtkd--vp~~~~~~G~PA~~  194 (262)
T d2jf2a1         153 IGGMTAVHQFCIIGAHVMVGGCSGVAQD--VPPYVIAQGNHATP  194 (262)
T ss_dssp             ECTTCEECTTCEECTTCEECSSCEECSB--BCTTEEEEEBTEEE
T ss_pred             eccCceeccccEeehhceeeccceEeec--CCcccccCCCCcee
Confidence            9999999999999999999999999986  888887765 4443

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.7e-23  Score=170.24  Aligned_cols=65  Identities=26%  Similarity=0.438  Sum_probs=57.7

Q ss_pred             cCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecChhh
Q 040779          223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNLEG  287 (300)
Q Consensus       223 ~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~~~  287 (300)
                      .+.....+++||++||||.+++|.++++|+++|+|+++|+|++|+|++++++|+||| +++++.+.
T Consensus       123 ~~~~~~~~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~iv~G~PArvik~~~~~~  188 (200)
T d1krra_         123 NGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIREINDRD  188 (200)
T ss_dssp             TCCBEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEECCGGG
T ss_pred             cceeecceEEEccCcccceeeecccccccCCCcEEeCCCEEeeEcCCCcEEEEeCCEEEEeCCHHH
Confidence            345566789999999999999999999999999999999999999999999999999 56655443

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.88  E-value=8.7e-24  Score=174.22  Aligned_cols=67  Identities=18%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             CccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEec
Q 040779          217 NYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGL  283 (300)
Q Consensus       217 ~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~  283 (300)
                      .+..+.....+.++++||++||||.+++|.++++|+++++|+++|+|++|+|++++++|+||| ++++
T Consensus       100 ~~~~~~~~~~i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G~PAk~ik~r  167 (203)
T d1mr7a_         100 KHMPKLDQLPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (203)
T ss_dssp             GGCCCGGGSCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             CcccccccccCccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEEeCCEEEecc
Confidence            344445556677899999999999999999999999999999999999999999999999999 4444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.88  E-value=9.6e-23  Score=163.73  Aligned_cols=74  Identities=24%  Similarity=0.369  Sum_probs=58.2

Q ss_pred             eCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceE-EEecChhhhh
Q 040779          215 IGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       215 Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      +++++.+...+.+ +++.|++++|++.++++.++++|+++|+|+++|+|++  ++|++++++|+||| ++++..+..+
T Consensus        76 ig~~~~~~~~~~~-~~~~i~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~~~~~~~  152 (172)
T d1xhda_          76 LEDDVTVGHQVIL-HSCHIKKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTAEDRK  152 (172)
T ss_dssp             ECTTCEECTTCEE-ESCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHH
T ss_pred             eeeeeeeeeeecc-cccccccceEEecccEeeCCcEEcCcccccceEEEeeCeEECCCeEEEecCcEEECCCCHHHHH
Confidence            3333333333333 3578999999999999999999999999999999984  69999999999999 5667665543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.87  E-value=3.7e-21  Score=157.22  Aligned_cols=168  Identities=18%  Similarity=0.249  Sum_probs=99.5

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCE-----ECCCCEECC----CcEECCCCEECCCcEEeCCcEECCCc
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVS-----VGPFCTIGS----AAKLGDGCLLYPSSHIFGNTELGDHC  124 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~-----I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~~IG~~~  124 (300)
                      +.+.+.|+++++|++++.|+++++|++++.|+++++     |++++.|..    ...+++++.|++++.+..++.+++++
T Consensus        11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~~~i~~~~~g~~~~Ig~~~~i~~~~~i~~~~   90 (196)
T d1g97a1          11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVIVGPYAHIRPNSSLGAQV   90 (196)
T ss_dssp             ECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTTC
T ss_pred             ECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccccceeeccccCcceeecceecccccccccce
Confidence            344455555555555555555555544444444444     444444442    12356677777777777777777777


Q ss_pred             EEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEc
Q 040779          125 ILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIM  204 (300)
Q Consensus       125 ~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~  204 (300)
                      .++..+.+..     ..+++++.++.++.+..              ..++.+..++                  .++...
T Consensus        91 ~i~~~~~~~~-----~~~~~~~~~~~~~~i~~--------------~~~~~~~~~~------------------~~~v~~  133 (196)
T d1g97a1          91 HIGNFVEVKG-----SSIGENTKAGHLTYIGN--------------CEVGSNVNFG------------------AGTITV  133 (196)
T ss_dssp             EEEEEEEEES-----CEECTTCEEEEEEEEES--------------EEECSSCEEC------------------TTCEEE
T ss_pred             eeccccccee-----eecCcceEecceEEecc--------------eeecceeecC------------------CCeEEe
Confidence            7776666665     66666666666666632              1222222222                  222222


Q ss_pred             c-ccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779          205 G-SCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG  260 (300)
Q Consensus       205 ~-~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~  260 (300)
                      . ......++.||++++++.++.+..+++||+++++|++++|.++  +++++++.+.
T Consensus       134 ~~~~~~~~~~~Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvVtkd--vp~~~i~~G~  188 (196)
T d1g97a1         134 NYDGKNKYKTVIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIAIGR  188 (196)
T ss_dssp             CBSSSCBCCEEECTTCEECTTCEEESSCEECTTCEECTTCEECSC--BCTTCEECCC
T ss_pred             ecceeeeeeeEEecCCEEeeeeEEcCCcEECCCCEECCCCEECcC--cCCCCEEEec
Confidence            1 1223345666777777777777778888888888888888875  7888887775

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.3e-21  Score=157.75  Aligned_cols=105  Identities=24%  Similarity=0.260  Sum_probs=91.3

Q ss_pred             eCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEEC
Q 040779          173 VGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIG  252 (300)
Q Consensus       173 IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~  252 (300)
                      ||+++.|+.+++|.+    ...++||++|+|++++.|.++..+++......++.+.++++||+++|+|.+++|.++++||
T Consensus        75 IG~~~~I~~~~~I~d----~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG  150 (182)
T d1ocxa_          75 LGNNFFANFDCVMLD----VCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIG  150 (182)
T ss_dssp             ECSSEEECSSEEEEC----SSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEEC
T ss_pred             ECCccEECCCcEEec----CCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEEC
Confidence            334444445555544    2466899999999999999999999988888999999999999999999999999999999


Q ss_pred             CCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          253 SHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       253 ~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      ++++|+++|+|++|+|++++++|+|||+.
T Consensus       151 ~~~vIgagsvV~kdvp~~~i~~G~PAk~i  179 (182)
T d1ocxa_         151 DNVVVASGAVVTKDVPDNVVVGGNPARII  179 (182)
T ss_dssp             TTCEECTTCEECSCBCSSEEEETTTTEEE
T ss_pred             CCCEECCCCEEccCCCCCeEEEeeCCEEE
Confidence            99999999999999999999999999954

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.84  E-value=1.1e-20  Score=154.21  Aligned_cols=74  Identities=20%  Similarity=0.340  Sum_probs=64.5

Q ss_pred             ccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE
Q 040779          206 SCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV  279 (300)
Q Consensus       206 ~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~  279 (300)
                      ++.+++++.+++++.+++++.+.+++.||++||||.+++|.++++|+++++|+++|+|++|+|+++++.|+|||
T Consensus       118 ~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~dv~~~~~~~G~PAk  191 (193)
T d3bswa1         118 SSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKNQDEKGVFVGVPAK  191 (193)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCSCCEECCCCCC
T ss_pred             ccccceeeeccccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECcCCCCCcEEEEeCCE
Confidence            34444556666666667777788889999999999999999999999999999999999999999999999997

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.83  E-value=1.3e-19  Score=159.33  Aligned_cols=220  Identities=13%  Similarity=0.111  Sum_probs=142.9

Q ss_pred             ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779           57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL  136 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~  136 (300)
                      .+.++++++|.+++.|++++.|.+++.|++++.|+ ++.|.+++.|++++.|++++.++ +..+..++.+.+++.+....
T Consensus        63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~-~~~i~g~~~v~~~a~i~g~~  140 (320)
T d2f9ca1          63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVRE-ECAIYGDARVLNQSEILAIQ  140 (320)
T ss_dssp             TCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECS-SEEECSSCEEESSCEECCCC
T ss_pred             CcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEe-eeEEECCeEEeCCcEEECCC
Confidence            45555666666666666666666666666666664 56666666666666666666554 44455555555555554321


Q ss_pred             C-----------------CceeeccceEEccccEEeeeecCcc--------cccCCcce------eeeCcccEECCCeEE
Q 040779          137 P-----------------GQTVFGCNNIIGHHAVVGVKCQDMK--------YKSGDECF------VDVGNNNEFREHVSI  185 (300)
Q Consensus       137 ~-----------------~~~~Ig~~~~ig~~~~i~~~~~~~~--------~~~~~~~~------~~IG~~~~i~~~~~i  185 (300)
                      .                 +...+.+++.|+.++.+......-.        ....-...      ..++.++.+..++.+
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~~a~V~g~a~i~g~v~~~~~v~~~~~v~gn~~I~~~~~i  220 (320)
T d2f9ca1         141 GLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAGTEE  220 (320)
T ss_dssp             CCSSSTTCCCEECSSCEEESCEECSSCEECSSCEEESCEECSSCEECSSCEEECCSSCCCEECSSCEECSSCEEECCSST
T ss_pred             ceeecccCcceecccceeeeeEEeeeeeeCCCccccceeeccceEEeeeeeecceeeccccccccccccccchhcCCeee
Confidence            0                 1234444555555554432110000        00000111      233344444444444


Q ss_pred             ecCCccCCceEECCCCEEccccEECcCcEeCCccEEccC-ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779          186 HRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANN-TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS  264 (300)
Q Consensus       186 ~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~-~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~  264 (300)
                      ...+.+...+.|++++.+..++.+.+++.|++++.+.++ +.+.+.+.|+++++|++++.|.+++.|++++.|++.+..+
T Consensus       221 ~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~~~a~v~a~~~~~  300 (320)
T d2f9ca1         221 DAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVIAFDDNT  300 (320)
T ss_dssp             TCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEECSSCEEECCSSCC
T ss_pred             ecccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEECCCeEEEEecCCe
Confidence            444555677788888888888888888999999988776 4688889999999999999999999999999999999888


Q ss_pred             CCCCCCcEEeeece
Q 040779          265 QDVPKYSMVAGERA  278 (300)
Q Consensus       265 ~~v~~~~~~~G~Pa  278 (300)
                      .++++..++.|.+.
T Consensus       301 ~~l~g~~~i~G~~~  314 (320)
T d2f9ca1         301 IHLRGPKVINGEDR  314 (320)
T ss_dssp             EEECSSEEECSSCE
T ss_pred             EEccCCcEEcCccc
Confidence            89999999999754

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=9.7e-20  Score=146.06  Aligned_cols=64  Identities=31%  Similarity=0.482  Sum_probs=55.8

Q ss_pred             eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceE-EEecChhhhh
Q 040779          226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAV-LRGLNLEGLR  289 (300)
Q Consensus       226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~-~~~~~~~~~~  289 (300)
                      ...+.+.||+++|+|.++.|.++++|+++++|+++|+|++  ++|++++++|+||| +++++.+..+
T Consensus        84 ~~~~~~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~~~~~~  150 (173)
T d1v3wa_          84 AMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTEEEIE  150 (173)
T ss_dssp             CEEESCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCHHHHH
T ss_pred             eeeeeeecCCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCCHHHHH
Confidence            3445689999999999999999999999999999999995  68999999999999 5777776544

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.81  E-value=2.8e-20  Score=153.75  Aligned_cols=80  Identities=14%  Similarity=0.125  Sum_probs=44.2

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV  273 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~  273 (300)
                      .+.||++++|+.++.+..++.||++++|+.++.+.+ .+||++|+|++++++. ++.|++++.|          |+++++
T Consensus       103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~-g~~i~~g~~I----------~~g~~v  170 (210)
T d1qrea_         103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAI-GVTIPDGRYI----------PAGMVV  170 (210)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEE-SCEECTTBEE----------CTTCEE
T ss_pred             ceeeccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEec-CcEeCCCcEE----------CCCcEE
Confidence            455555555555555555555555555555555543 3566666666665543 3444444444          556666


Q ss_pred             eee-ceE-EEecCh
Q 040779          274 AGE-RAV-LRGLNL  285 (300)
Q Consensus       274 ~G~-Pa~-~~~~~~  285 (300)
                      .|. |++ ++++..
T Consensus       171 ~g~~~~~~i~~~~~  184 (210)
T d1qrea_         171 TSQAEADKLPEVTD  184 (210)
T ss_dssp             CSHHHHHTCCBCCT
T ss_pred             eCCCcccccccCCH
Confidence            664 665 344443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=7.9e-20  Score=150.50  Aligned_cols=62  Identities=21%  Similarity=0.296  Sum_probs=55.7

Q ss_pred             CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecCh
Q 040779          224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNL  285 (300)
Q Consensus       224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~  285 (300)
                      +....++++||++||||.+++|.++++|+++|+|+++|+|++|+|++++++|+||| ++++..
T Consensus       102 ~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkdvp~~si~~G~PAk~ik~R~~  164 (208)
T d1xata_         102 GYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRKRFS  164 (208)
T ss_dssp             CCCCCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEESSC
T ss_pred             CccccCCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeecCCcCcEEEecCCEEEeccCC
Confidence            44456789999999999999999999999999999999999999999999999999 455433

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=99.74  E-value=6.8e-17  Score=141.70  Aligned_cols=205  Identities=11%  Similarity=0.162  Sum_probs=145.9

Q ss_pred             CCceE-CCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779           68 SSSFI-HPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN  146 (300)
Q Consensus        68 ~~~~I-~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~  146 (300)
                      .+++| ++++++.+++.|.+++.|++++.|.+++.|+++++|+ ++.|.+++.|++++.|.+++.+..     ..+..++
T Consensus        55 g~~wv~~~nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~-----~~i~g~~  128 (320)
T d2f9ca1          55 GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREE-----CAIYGDA  128 (320)
T ss_dssp             SSCEECSTTCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSS-----EEECSSC
T ss_pred             CCCEEECCCcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEee-----eEEECCe
Confidence            67787 5689999999999999999999999999999999996 688888999999999998888765     6666666


Q ss_pred             EEccccEEeeeecCcc--------cccCCcceeeeCcccEECCCeEEec---------------------------CCcc
Q 040779          147 IIGHHAVVGVKCQDMK--------YKSGDECFVDVGNNNEFREHVSIHR---------------------------SSKS  191 (300)
Q Consensus       147 ~ig~~~~i~~~~~~~~--------~~~~~~~~~~IG~~~~i~~~~~i~~---------------------------~~~~  191 (300)
                      .+..++.+........        +.........+.+++.++.++.+..                           .+.+
T Consensus       129 ~v~~~a~i~g~~~~~~~~~~~~~i~~~~~~~~~~I~~~~~Iggna~i~~~~i~~~a~V~g~a~i~g~v~~~~~v~~~~~v  208 (320)
T d2f9ca1         129 RVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKV  208 (320)
T ss_dssp             EEESSCEECCCCCCSSSTTCCCEECSSCEEESCEECSSCEECSSCEEESCEECSSCEECSSCEEECCSSCCCEECSSCEE
T ss_pred             EEeCCcEEECCCceeecccCcceecccceeeeeEEeeeeeeCCCccccceeeccceEEeeeeeecceeeccccccccccc
Confidence            6666666632211100        0000011223444444444433322                           2223


Q ss_pred             CCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCc-EEccCcEECCCcEEccCCEECCC--CC
Q 040779          192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAI-VIHQFCHIGSHSFIGGGSVVSQD--VP  268 (300)
Q Consensus       192 ~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~-~v~~~~~I~~~~vv~~~svv~~~--v~  268 (300)
                      ...+.|+.++.+..++.+..++.|++++.+..++.+.+++.|++++++.+++ .+.+.++|++++.|++++.|..+  +.
T Consensus       209 ~gn~~I~~~~~i~~~~~i~~~~~Ig~~a~I~g~~~i~~~v~Ig~~a~i~G~~v~i~~~~~I~~~a~I~g~~~I~~~v~i~  288 (320)
T d2f9ca1         209 YGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEIS  288 (320)
T ss_dssp             CSSCEEECCSSTTCCCEECSSCEECSSCEEESSEEECTEEEECSSCEEESSSEEECSEEEECSSCEEESSEEECSEEEEC
T ss_pred             cccchhcCCeeeecccccccccccCcceeeeeeccccCceEECCCeEEeCCeeEECCceEECCCcEEcccCEEeCCCEEC
Confidence            3445566666666677777888888888888889999999999999997776 45566899999999999999887  48


Q ss_pred             CCcEEeeece
Q 040779          269 KYSMVAGERA  278 (300)
Q Consensus       269 ~~~~~~G~Pa  278 (300)
                      +++++.+.+.
T Consensus       289 ~~a~v~a~~~  298 (320)
T d2f9ca1         289 GRAAVIAFDD  298 (320)
T ss_dssp             SSCEEECCSS
T ss_pred             CCeEEEEecC
Confidence            8888775444

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=4.2e-17  Score=136.71  Aligned_cols=103  Identities=21%  Similarity=0.282  Sum_probs=78.4

Q ss_pred             eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779          171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH  250 (300)
Q Consensus       171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~  250 (300)
                      +.|+.++.|+.+..|..    +.++.||+.+.++.++.+.+++.++....    .....+++||+++|||++++|.++++
T Consensus       138 ~~I~~~~~Ig~g~~i~h----~~givig~~~~ig~~~~i~~~v~~~~~~~----~~~~~~~~Ig~~v~IGaga~Ilg~v~  209 (241)
T d1ssqa_         138 VDIHPAAKIGHGIMFDH----ATGIVVGETSVIENDVSILQGVTLGGTGK----ESGDRHPKVREGVMIGAGAKILGNIE  209 (241)
T ss_dssp             CEECTTCEECSSCEESS----CTTCEECTTCEECTTCEECTTCEEECCSS----SCSSCSCEECTTCEECTTCEEESSCE
T ss_pred             eccccCCEEccCcccCc----cceEEEeccceecCCeeeccccccccccc----CCCCCCCccCCCeEECCCCEEcCCcE
Confidence            34444445555555543    34667777777777777777776654321    12235689999999999999999999


Q ss_pred             ECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779          251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLR  281 (300)
Q Consensus       251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~  281 (300)
                      ||++++||+||+|++|+|++++++|+|||+.
T Consensus       210 IG~~a~IgAgsvV~kdVp~~~vv~G~PAr~I  240 (241)
T d1ssqa_         210 VGKYAKIGANSVVLNPVPEYATAAGVPARIV  240 (241)
T ss_dssp             ECTTCEECTTCEECSCBCTTCEEETTTTEEC
T ss_pred             ECCCCEECCCCEECCCCCCCCEEEecCcEEe
Confidence            9999999999999999999999999999963

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.67  E-value=1.5e-16  Score=130.95  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             cceeCCCceECCCcEEcCCCEECCCCEECCCCEEC
Q 040779           63 ETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIG   97 (300)
Q Consensus        63 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~   97 (300)
                      ..+|++.++|+|+|+|.+++.||++++|+++|.|+
T Consensus        22 ~p~I~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIr   56 (210)
T d1qrea_          22 APVIDPTAYIDPQASVIGEVTIGANVMVSPMASIR   56 (210)
T ss_dssp             CCEECTTCEECTTCEEEESEEECTTCEECTTCEEE
T ss_pred             CCccCCCCEECCCCEEecceEECCCCEEccCeeee
Confidence            34577777788887777777777777777777773

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=5.8e-16  Score=126.53  Aligned_cols=168  Identities=15%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEEC----------CCcEECCCCEECCCcEEeCCcEECCC
Q 040779           54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIG----------SAAKLGDGCLLYPSSHIFGNTELGDH  123 (300)
Q Consensus        54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~----------~~~~Ig~~~~I~~~~~I~~~~~IG~~  123 (300)
                      ++....|++.++|++++.|++++.|+++++|++++.|+..+.+.          .++.+++++.++.++.+.....+++.
T Consensus        11 i~~~v~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~   90 (201)
T d2oi6a1          11 LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEG   90 (201)
T ss_dssp             EEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTT
T ss_pred             ECceEEECCCCEECCCCEECCceEECCCcEECCCEEEeeeccCCceeeeeeecccccccccccccCcccccccceeeeee
Confidence            56677777888888888888888888888888888776544432          23445666666666666666666666


Q ss_pred             cEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEE
Q 040779          124 CILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLI  203 (300)
Q Consensus       124 ~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i  203 (300)
                      +.++..+.+..     ..+++++.+++.+.+.              ...+++++.++.++......              
T Consensus        91 ~~i~~~~~~~~-----~~ig~~~~i~~~~~~~--------------~~~~~~~~~i~~~~~~~~~~--------------  137 (201)
T d2oi6a1          91 AHVGNFVEMKK-----ARLGKGSKAGHLTYLG--------------DAEIGDNVNIGAGTITCNYD--------------  137 (201)
T ss_dssp             CEEEEEEEEEE-----EEECTTCEEEEEEEEE--------------EEEECTTCEECTTCEEECBS--------------
T ss_pred             eeecceeeeee-----eeeCCCeEEceeeeec--------------ccCcCccccccCceeEeecc--------------
Confidence            66666665554     6777777777665552              24555555555544332111              


Q ss_pred             ccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779          204 MGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG  259 (300)
Q Consensus       204 ~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~  259 (300)
                         -....++.|+++++++.++.+..+++||+++++|++++|.++  +++++++-+
T Consensus       138 ---~~~~~~~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV~kd--Vp~~si~vg  188 (201)
T d2oi6a1         138 ---GANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN--VGENALAIS  188 (201)
T ss_dssp             ---SSCBCCEEECTTCEECTTCEEESSEEECTTCEECTTCEECSC--BCTTCEECC
T ss_pred             ---cccccccEeCCcEEEeEeeeEcCCcEECCCCEECCCCEEeee--cCCCCEEEe
Confidence               011234556666666777777778888888889999988876  699997544

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.62  E-value=7e-15  Score=119.25  Aligned_cols=64  Identities=28%  Similarity=0.526  Sum_probs=41.7

Q ss_pred             CceECCCcEEcCCCEECC--CCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779           69 SSFIHPTSIVHPNAIIGQ--GVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV  132 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~--~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i  132 (300)
                      .+.|||+++|.+++.|+.  ++.|++++.|+.++.||+++.|..++.|++++.||++|++++++.+
T Consensus        74 ~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i  139 (193)
T d3bswa1          74 VNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKC  139 (193)
T ss_dssp             CCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccc
Confidence            356777777777777743  5777777777777777777666666666655555555555554444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=3.5e-15  Score=118.90  Aligned_cols=133  Identities=14%  Similarity=0.150  Sum_probs=71.8

Q ss_pred             CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeC---CcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeee
Q 040779           81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFG---NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVK  157 (300)
Q Consensus        81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~---~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~  157 (300)
                      .++||++++|+++++|.+++.||++|.|++++.|.+   .+.||+++.++.++.+.......+                 
T Consensus        12 ~~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~-----------------   74 (172)
T d1xhda_          12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPL-----------------   74 (172)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCE-----------------
T ss_pred             CCEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCe-----------------
Confidence            345555555555555555555555555555555542   245566666666555554222223                 


Q ss_pred             ecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCc
Q 040779          158 CQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYT  237 (300)
Q Consensus       158 ~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~  237 (300)
                                    .+|+++.+...+.+       .++.|+++++++.++.+.++                  ++||++|
T Consensus        75 --------------~ig~~~~~~~~~~~-------~~~~i~~~~~ig~~~~i~~g------------------v~IG~~~  115 (172)
T d1xhda_          75 --------------ILEDDVTVGHQVIL-------HSCHIKKDALIGMGSIILDG------------------AEIGEGA  115 (172)
T ss_dssp             --------------EECTTCEECTTCEE-------ESCEECTTCEECTTCEECTT------------------CEECTTC
T ss_pred             --------------eeeeeeeeeeeecc-------cccccccceEEecccEeeCC------------------cEEcCcc
Confidence                          33333333333333       23344454444444444433                  4566677


Q ss_pred             EECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779          238 HTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK  269 (300)
Q Consensus       238 ~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~  269 (300)
                      +||++++|.++..|++++++++ .+.+.+++++
T Consensus       116 ~IgagsvV~~~~~i~~~~v~~G~Pak~i~~~~~  148 (172)
T d1xhda_         116 FIGAGSLVSQGKKIPPNTLAFGRPAKVIRELTA  148 (172)
T ss_dssp             EECTTCEECTTCEECTTEEEEETTEEEEEECCH
T ss_pred             cccceEEEeeCeEECCCeEEEecCcEEECCCCH
Confidence            7777777777788888887755 4766665543

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.2e-15  Score=122.56  Aligned_cols=56  Identities=14%  Similarity=0.213  Sum_probs=37.1

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCCCCC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQDVPK  269 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~v~~  269 (300)
                      .+.||++++++.++.+..+++||++|+||++++|.++  |++++++.+. +.+.+++.+
T Consensus       130 ~v~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kd--vp~~~iv~G~PArvik~~~~  186 (200)
T d1krra_         130 PITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKD--IPPNVVAAGVPCRVIREIND  186 (200)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEEECCG
T ss_pred             eEEEccCcccceeeecccccccCCCcEEeCCCEEeeE--cCCCcEEEEeCCEEEEeCCH
Confidence            3444444445555555566777778888888888775  7899887664 677666543

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.59  E-value=2.2e-14  Score=118.90  Aligned_cols=62  Identities=21%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             CEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779           88 VSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV  154 (300)
Q Consensus        88 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i  154 (300)
                      .++-|++.++.++.|+.++++.+ +++.-++.||++|.|..+++++..    +.||++|+|+.++.|
T Consensus       103 ~RvvPga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~----aqIG~~vhis~g~~i  164 (274)
T d3tdta_         103 FRVVPPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSC----AQIGKNVHLSGGVGI  164 (274)
T ss_dssp             CEECTTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTT----CEECTTCEECTTCEE
T ss_pred             EEeCCCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecce----eEECCCeEECCCcEE
Confidence            44455555555555555554443 455555666666666666666542    455555555555555

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=1.3e-13  Score=109.71  Aligned_cols=39  Identities=15%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             eEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779          231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK  269 (300)
Q Consensus       231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~  269 (300)
                      ++||++|+||++++|.++..|++++++++ .+.+.+++.+
T Consensus       107 v~Ig~~~vIgagsvV~~~~~i~~~~iv~G~Pak~i~~~~~  146 (173)
T d1v3wa_         107 AKIGDHVIIGAGAVVPPNKEIPDYSLVLGVPGKVVRQLTE  146 (173)
T ss_dssp             CEECSSEEECTTCEECTTCEECTTEEEEETTEEEEEECCH
T ss_pred             EEEcceeEEcCCcEEeCCeEeCCCCEEcCCCceEecCCCH
Confidence            34556666677777777778888888755 4666555543

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.46  E-value=9.6e-13  Score=108.90  Aligned_cols=167  Identities=16%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779           69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII  148 (300)
Q Consensus        69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i  148 (300)
                      +.++-|++.+...+.|++|+.+-| ++|.-++.||+++.|..++.|+..++||++|+|+.++.|.....           
T Consensus       102 g~RvvPga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvle-----------  169 (274)
T d3tdta_         102 GFRVVPPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLE-----------  169 (274)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBT-----------
T ss_pred             CEEeCCCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccc-----------
Confidence            467888888888888888887764 78888899999999999999998999999999999998876210           


Q ss_pred             ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceec
Q 040779          149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA  228 (300)
Q Consensus       149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~  228 (300)
                                      ...                        ..++.|+|+|+|++++.+..++.|++++++++++.+.
T Consensus       170 ----------------p~~------------------------~~p~iIed~~~IGa~s~v~egv~Vg~~avi~~gv~i~  209 (274)
T d3tdta_         170 ----------------PLQ------------------------ANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLG  209 (274)
T ss_dssp             ----------------TBC------------------------SSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ----------------cCC------------------------CCCcEEecCcEeccCceEecCEEecCceEeccceEEe
Confidence                            000                        2355566666666666666666666666666666666


Q ss_pred             CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCc
Q 040779          229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNV  295 (300)
Q Consensus       229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~  295 (300)
                      ..+.|-|...   +-+. . -.||+++++=+|+.-.++ ...+++-  |-.++++......++..++
T Consensus       210 ~~t~i~d~~~---g~~~-~-g~vP~~svvv~gs~p~~~-~~~~l~c--avIvk~~d~~t~~kt~l~~  268 (274)
T d3tdta_         210 QSTRIYDRET---GEIH-Y-GRVPAGSVVVSGNLPSKD-GSYSLYC--AVIVKKVDAKTRGKVGINE  268 (274)
T ss_dssp             TTCCEEETTT---CCEE-S-SEECTTEEEEEEEEECTT-SSCEEEE--EEEEEECCHHHHHHHCCCG
T ss_pred             ccccceeccC---CcEe-c-cccCCCCEEecCceecCC-CCcCCcc--eEEEEeccCccchhhHHHH
Confidence            6555544432   1222 2 268888888777655442 2333432  2225666666655555543

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.45  E-value=5.7e-15  Score=120.76  Aligned_cols=157  Identities=16%  Similarity=0.111  Sum_probs=84.6

Q ss_pred             cCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCc
Q 040779           60 DKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQ  139 (300)
Q Consensus        60 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~  139 (300)
                      ++|.+.+...++|++.+.+.+++.||++++|++.     ...+++.+.+++++.|.+++.||++|.|++++.|...  +.
T Consensus         8 i~P~~~~~~~~~I~~~v~i~~nV~IG~~~~I~~~-----~~~~~~~~~i~~~~~I~~~v~IG~~~~Ig~gv~I~~~--~~   80 (203)
T d1mr7a_           8 MYPIEGNKSVQFIKPILEKLENVEVGEYSYYDSK-----NGETFDKQILYHYPILNDKLKIGKFCSIGPGVTIIMN--GA   80 (203)
T ss_dssp             SSCSTTCCSEEEHHHHHTTSTTEEECTTCEEECS-----SSCCGGGGEESCCGGGCCCEEECSSCEECTTCEEECG--GG
T ss_pred             cCCCCCCCceEEECCCeEECCCEEECCCcEEcCC-----cCcccCceEEeeeCEECCccEECCCeEECCCCcEeee--cC
Confidence            3443333333444444444444444444444322     2333456666777777777777788877777776431  11


Q ss_pred             eeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCcc
Q 040779          140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYN  219 (300)
Q Consensus       140 ~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~  219 (300)
                      ..+++++.+.....                                        ...++++..+.....+...+.||+++
T Consensus        81 ~~i~d~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~g~v~IGd~v  120 (203)
T d1mr7a_          81 NHRMDGSTYPFNLF----------------------------------------GNGWEKHMPKLDQLPIKGDTIIGNDV  120 (203)
T ss_dssp             CCCCSSCCCCGGGG----------------------------------------CTTGGGGCCCGGGSCCCCCEEECSSC
T ss_pred             cEeccCceEeeeee----------------------------------------cccccCcccccccccCccCeEECCEE
Confidence            22222222211110                                        00011122222223334556666666


Q ss_pred             EEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECC
Q 040779          220 IFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQ  265 (300)
Q Consensus       220 ~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~  265 (300)
                      +|+.++.+..+++||++++||++++|.++  +++++++++. +.+.+
T Consensus       121 ~IG~~~~I~~gv~IG~~~~IgagSvV~kd--v~~~~i~~G~PAk~ik  165 (203)
T d1mr7a_         121 WIGKDVVIMPGVKIGDGAIVAANSVVVKD--IAPYMLAGGNPANEIK  165 (203)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEEETTEEEEE
T ss_pred             EECCceeEEeEEEEcCCCEEecCeEEeee--CCCCEEEEEeCCEEEe
Confidence            66677777778888888888889988875  7889888765 55544

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.43  E-value=8.6e-14  Score=106.18  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=34.8

Q ss_pred             ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779          194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV  263 (300)
Q Consensus       194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv  263 (300)
                      .+.||++++|. ++.|++++.||+++.+..+..+.+.+.+++++++..+.     ++|+++++|++|+++
T Consensus        72 ~v~Ig~~~~I~-~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~-----vvIg~~~~I~~g~vI  135 (135)
T d1yp2a1          72 PIGIGKNCHIK-RAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI-----VTVIKDALIPSGIII  135 (135)
T ss_dssp             CSEECTTCEEE-SEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTE-----EEECTTCEECTTCBC
T ss_pred             CCEECcceEec-cceecCCCEECCCcEECCCcccccceeeCCCEEECCCe-----EEECCCCEECcCcCC
Confidence            34444444443 45555555555555555555555555555555555443     346666666666653

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.5e-13  Score=92.94  Aligned_cols=68  Identities=21%  Similarity=0.396  Sum_probs=41.8

Q ss_pred             ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEcc
Q 040779           59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT  128 (300)
Q Consensus        59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~  128 (300)
                      .|+.+++|++++.|+|+++|++++.||+||.|+++|+|. +++|++++.|++++.|. ++.||++|.|++
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~-~~~Ig~~~~I~~~s~i~-~~~Ig~~~~IGP   77 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVE-DANLAAACTIGP   77 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECTTCEEE-SEEECTTCEESC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEe-cCEECCCCEEcCCcEEE-CCEECCCCEECc
Confidence            455556666666666666666666666666666666665 56666666666666665 455555555554

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.42  E-value=6.1e-14  Score=107.06  Aligned_cols=47  Identities=13%  Similarity=0.099  Sum_probs=20.5

Q ss_pred             CCCCEEccccEECcCcEeCCccEEccCceecCc-eEECCCcEECcCcE
Q 040779          198 GDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH-VVVEDYTHTAGAIV  244 (300)
Q Consensus       198 G~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~-v~Ig~~~~ig~~~~  244 (300)
                      |+++.|++++.+..++.+.+++.+..++.+.++ ++|+++++|+++++
T Consensus        87 g~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~v  134 (135)
T d1yp2a1          87 DKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGII  134 (135)
T ss_dssp             CTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCB
T ss_pred             cCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcC
Confidence            333333333333333333333333333333333 45666666666554

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.7e-13  Score=93.86  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             cEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779           76 SIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH  151 (300)
Q Consensus        76 ~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~  151 (300)
                      ..|.+++.||+++.|++++.|+++++||++|.|+++|.|. ++.|++++.|+++++|.+     +.|++++.||++
T Consensus         9 ~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~-~~~Ig~~~~I~~~s~i~~-----~~Ig~~~~IGPf   78 (78)
T d1fxja1           9 FDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIK-NSVIGDDCEISPYTVVED-----ANLAAACTIGPF   78 (78)
T ss_dssp             EEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECTTCEEES-----EEECTTCEESCC
T ss_pred             EEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEe-cCEECCCCEEcCCcEEEC-----CEECCCCEECcC
Confidence            3577788899999999999999899999999999999998 899999999999999976     888888888864

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.1e-13  Score=110.81  Aligned_cols=51  Identities=18%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEEC
Q 040779          212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVS  264 (300)
Q Consensus       212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~  264 (300)
                      .+.||++++++.++.+..+++||++++||++++|.++  +++++++.+. +.+.
T Consensus       128 ~v~Ig~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd--vp~~~i~~G~PAk~i  179 (182)
T d1ocxa_         128 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARII  179 (182)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCSSEEEETTTTEEE
T ss_pred             eeEECceEeeCceeeccCcEEECCCCEECCCCEEccC--CCCCeEEEeeCCEEE
Confidence            3444444445555555566777777777777777764  7888876654 5443

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.04  E-value=1.1e-10  Score=94.95  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECC
Q 040779          211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQ  265 (300)
Q Consensus       211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~  265 (300)
                      .++.||++|+|+.++.+..+++||++|+||++++|.++  +++++++.+. +.+.+
T Consensus       107 g~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkd--vp~~si~~G~PAk~ik  160 (208)
T d1xata_         107 GDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD--VEPYAIVGGNPARTIR  160 (208)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC--BCTTEEEETTTTEEEE
T ss_pred             CCEEEcCCeEECccccccCCeEeCCCCEEeCceEEeec--CCcCcEEEecCCEEEe
Confidence            45666777777777777788888888999999998875  6888877664 65544

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.98  E-value=3.9e-09  Score=87.46  Aligned_cols=79  Identities=19%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEE
Q 040779           57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCIL  126 (300)
Q Consensus        57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I  126 (300)
                      ...|++.+.|+++++|+.  +..|++++.||+++.|..++.++.        ..+||++++|+.++.|.++++||+++.|
T Consensus       137 g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~I  216 (241)
T d1ssqa_         137 DVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKI  216 (241)
T ss_dssp             SCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred             eeccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECCCCEE
Confidence            456666777777777754  566777777777777777777753        2567888888888877778888888888


Q ss_pred             ccCcEEccC
Q 040779          127 MTGAVVGDD  135 (300)
Q Consensus       127 ~~~~~i~~~  135 (300)
                      +.++++..+
T Consensus       217 gAgsvV~kd  225 (241)
T d1ssqa_         217 GANSVVLNP  225 (241)
T ss_dssp             CTTCEECSC
T ss_pred             CCCCEECCC
Confidence            888777764