Citrus Sinensis ID: 040788

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVKQQDMQED
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccHHHHHccHHHHHHHHcccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHcccccHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mekrriddcepgpvpsprpvdrfgfvkqehgsphegviksrSAIQFEREERRVRKWRKMIgvggsdwkhyvrrkpHVVKRRIRKGIPDCLRGLVWQLISGSrdlllmnpgvYEQLLIYETSTSELDIIRDIsrtfpshvffqqrhgpgqrsLYNVLKAYsvydrdvgyvqGMGFLAGLLLLYMSEEDAFWLMVALLKGavhapmeglyqVGLPLVQQYLFQFDHLVKEHLPKLGEHftkeminpsmyASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALrnfpedamdpdkllpVAYSIKVSKRLEELKSLYEKQNKKVVQSAETngkvkqqdmqed
Flexible Loop (DISEMBL)
mekrriddcepgpvpsprpvDRFGFVKqehgsphegviksrsaiqfereerrvrkwrkmigvggsdwkhyvrrkphvvkrrirkgipdcLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFfqqrhgpgqrsLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNfpedamdpdKLLPVAYSIKVSKRLEELKSLyekqnkkvvqsaetngkvkqqdmqed
Low Complexity Region (SEG)
MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFereerrVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVKQQDMQED
Disordered region (IsUnstruct)
***************************************************RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSK**********************************
Disordered Region (DISOPRED)
******************PVDRFGFV***************************RKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELK****************************
Disordered Region (DISEMBL)
**********PGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQN*********************
Disordered Region (DISPRO)
***********************************G**KSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRxxxxxxxxxxxxxxxxxxxxxNGKVKQQDMQED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
Q96CN4	794	EVI5-like protein OS=Homo	yes	no	0.734	0.337	0.396	2e-53
O60447	810	Ecotropic viral integrati	no	no	0.739	0.333	0.390	8e-53
Q9VYY9	807	TBC1 domain family member	yes	no	0.745	0.337	0.375	4e-51
Q4KMP7	808	TBC1 domain family member	no	no	0.882	0.398	0.337	5e-48
Q5ZJ17	816	Rab GTPase-activating pro	no	no	0.791	0.354	0.355	1e-47
Q8BHL3	798	TBC1 domain family member	no	no	0.797	0.364	0.355	3e-47
Q9Y3P9	1069	Rab GTPase-activating pro	no	no	0.750	0.256	0.350	6e-47
Q5RAN1	1069	Rab GTPase-activating pro	no	no	0.750	0.256	0.350	6e-47
Q5RCW6	815	Rab GTPase-activating pro	no	no	0.679	0.304	0.375	6e-47
Q5R372	815	Rab GTPase-activating pro	no	no	0.679	0.304	0.375	7e-47

>sp|Q96CN4|EVI5L_HUMAN EVI5-like protein OS=Homo sapiens GN=EVI5L PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/280 (39%), Positives = 173/280 (61%), Gaps = 12/280 (4%)

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           G   ++W+ + RRK  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +
Sbjct: 91  GRIANEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQ--YSELLKMSS 148

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
              +L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL
Sbjct: 149 PCEKL-IRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLL 207

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           + M EE+AF + V L++      +  L++  +  +   ++QF+++++E LP L  HF  +
Sbjct: 208 MQMPEEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQ 264

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
             + SMYAS WF+T+F  +FP  +A R++D+F++EG++IVF+VGLALL     +L++L  
Sbjct: 265 SFHTSMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQAELMQLDM 324

Query: 301 EKLIHALRNFPEDAMD--PDKLLPVAYSIKVS----KRLE 334
           E +    +       D  PDKL+  AY +K +    KRLE
Sbjct: 325 EGMSQYFQRVIPHQFDSCPDKLVLKAYQVKYNPKKMKRLE 364

Functions as a GTPase-activating protein (GAP) with a broad specificity.
Homo sapiens (taxid: 9606)

>sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog OS=Homo sapiens GN=EVI5 PE=1 SV=3

 Score =  207 bits (528), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 109/279 (39%), Positives = 175/279 (62%), Gaps = 9/279 (3%)

Query: 65  SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
           ++W+   ++K   VK  + KGIP   R +VWQL+  ++ + + +   Y +LL   TS  E
Sbjct: 143 NEWEDVRKKKEKQVKELVHKGIPHHFRAIVWQLLCSAQSMPIKDQ--YSELLKM-TSPCE 199

Query: 125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             I RDI+RT+P H FF+++   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct: 200 KLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 259

Query: 185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
           EE+AF + V L++      +  L++  +  +   ++QF+ +++EHLP+L  HF  +  + 
Sbjct: 260 EEEAFCVFVKLMQDY---RLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHT 316

Query: 245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
           SMYAS WF+T+F  +FP  +A RI+D+F+ EG++IVF+VGLALL     +L++L  E ++
Sbjct: 317 SMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGML 376

Query: 305 HALRNFPEDAMD--PDKLLPVAYSIKV-SKRLEELKSLY 340
              +       D  PDKL+  AY +K  SK++++L+  Y
Sbjct: 377 QHFQKVIPHQFDGVPDKLIQAAYQVKYNSKKMKKLEKEY 415

Functions as a regulator of cell cycle progression by stabilizing the FBXO5 protein and promoting cyclin-A accumulation during interphase. May play a role in cytokinesis.

Homo sapiens (taxid: 9606)

>sp|Q9VYY9|Y1727_DROME TBC1 domain family member CG11727 OS=Drosophila melanogaster GN=CG11727 PE=1 SV=3

 Score =  202 bits (513), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 176/288 (61%), Gaps = 16/288 (5%)

Query: 65  SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
           +DW+  ++RK   V   +R+GIP   R +VWQ +SG+ D        Y    I  TS  E
Sbjct: 96  NDWEGALKRKNPCVSELVRRGIPHHFRAIVWQQLSGASDGDKKQYAEY----IKATSACE 151

Query: 125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             I RDI+RT+P   FF+++ GPGQ +L+NV+KAYS++DR+VGY QG GF+ GLLL+ M 
Sbjct: 152 KVIRRDIARTYPEVEFFKEKDGPGQEALFNVIKAYSLHDREVGYCQGSGFIVGLLLMQMP 211

Query: 185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
           EE+AF ++V +++      M  +++  +  +   ++Q ++LV+E +P +  HF ++    
Sbjct: 212 EEEAFAVLVQIMQ---QHRMRHMFKPSMSELGLCMYQLENLVQEQIPDMHIHFQQQGFQT 268

Query: 245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
           +MYAS WF+T+++ +   +L+ RI DVFL EG++ +FKV LALL    D L+ L  E + 
Sbjct: 269 TMYASSWFLTLYTTTLNVNLSCRIMDVFLSEGMEFIFKVALALLLTGKDTLLCLDMEAM- 327

Query: 305 HALRNFPED-----AMDPDKLLPVAYSIKV-SKRLEELKSLYEKQNKK 346
             L+ F ++       D +    +AYSIK+ +KR+++++  Y+   KK
Sbjct: 328 --LKFFQKELPGRVEADVEGFFNLAYSIKLNTKRMKKMEKEYQDLKKK 373

Functions as a GTPase-activating protein (GAP).

Drosophila melanogaster (taxid: 7227)

>sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapiens GN=TBC1D10B PE=1 SV=3

 Score =  192 bits (487), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 184/347 (53%), Gaps = 25/347 (7%)

Query: 18  RPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHV 77
           R  D++GF+    GS + G ++S   +   R+  R  KW  M     S+W  ++ R+   
Sbjct: 302 RKTDKYGFLG---GSQYSGSLESSIPVDVARQ--RELKWLDMF----SNWDKWLSRRFQK 352

Query: 78  VKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDII-RDISRTFP 136
           VK R RKGIP  LR   WQ +S S++LL  NPG +E+L         LD+I +D+ R FP
Sbjct: 353 VKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFP 412

Query: 137 SHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALL 196
            H  F  R G GQ+ LY +LKAY++Y  D GY Q    +A +LL++M  E AFW +V + 
Sbjct: 413 FHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQIC 472

Query: 197 KGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVF 256
                  + G Y  GL  +Q     F  L++   P    H  ++ I+P +Y ++WF+ +F
Sbjct: 473 DKY----LPGYYSAGLEAIQLDGEIFFALLRRASPLAHRHLRRQRIDPVLYMTEWFMCIF 528

Query: 257 SYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL----PFEKLIHALRNFPE 312
           + + P+   LR+WD+F  EGVKI+F+V L LL +    + KL       + +  LRN P+
Sbjct: 529 ARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQ 588

Query: 313 DAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQS-AETNGKVK 358
             M  D L+    ++ V+      ++L E++N   ++   ET G+++
Sbjct: 589 QCMQEDFLVHEVTNLPVT------EALIERENAAQLKKWRETRGELQ 629

Acts as GTPase-activating protein for RAB3A, RAB22A, RAB27A, AND RAB35. Does not act on RAB2A and RAB6A.

Homo sapiens (taxid: 9606)

>sp|Q5ZJ17|RBG1L_CHICK Rab GTPase-activating protein 1-like OS=Gallus gallus GN=RABGAP1L PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/307 (35%), Positives = 172/307 (56%), Gaps = 18/307 (5%)

Query: 50  ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNP 109
           E+ +  W +++G     W + +  +P+ +   +++G+P+ LR  VWQL++G  D    N 
Sbjct: 508 EKILYSWGELLG----RWHNNLVVRPNGLSTLVKRGVPEALRAEVWQLLAGCHD----NE 559

Query: 110 GVYEQ--LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVG 167
            + ++  +LI   S  E  I RDI RTFP+H +F+   G GQ SLY + KAYSVYD D+G
Sbjct: 560 AMLDKYRILITMDSAQENVITRDIHRTFPAHDYFKDTEGDGQESLYKICKAYSVYDEDIG 619

Query: 168 YVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVK 227
           Y QG  FLA +LLL+M EE AF + V ++       +  LY+     +    FQ + L++
Sbjct: 620 YCQGQSFLAAVLLLHMPEEQAFCVFVKIM---YDYGLRDLYRNNFEDLHCKFFQLEKLMQ 676

Query: 228 EHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL 287
           E LP L  HF+   +   MYASQWF+T+F+  FP  +   I D+ L EG+ I+F V LAL
Sbjct: 677 EQLPDLYSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGMNIIFHVALAL 736

Query: 288 LTYCHDDLIKLPFEKLIHALR-NFPE---DAMDPDKLLPVAYSIKV-SKRLEELKSLYEK 342
           L    +DL++  FE  +   R   P+      +  +L+  A +IKV +K+L++ +  Y+ 
Sbjct: 737 LKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEREYQT 796

Query: 343 QNKKVVQ 349
             +  +Q
Sbjct: 797 MRESQLQ 803

Gallus gallus (taxid: 9031)

>sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus musculus GN=Tbc1d10b PE=1 SV=2

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 18/309 (5%)

Query: 18  RPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHV 77
           R  D++GF+    GS + G ++S   +   R+  R  KW +M     S+W  ++ R+   
Sbjct: 288 RKTDKYGFLG---GSQYSGSLESSIPVDVARQ--RELKWLEMF----SNWDKWLSRRFQK 338

Query: 78  VKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDII-RDISRTFP 136
           VK R RKGIP  LR   WQ +S S++LL  NPG +E+L         LD+I +D+ R FP
Sbjct: 339 VKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAAGDPKWLDVIEKDLHRQFP 398

Query: 137 SHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALL 196
            H  F  R G GQ+ LY +LKAY++Y  D GY Q    +A +LL++M  E AFW +V + 
Sbjct: 399 FHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQIC 458

Query: 197 KGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVF 256
                  + G Y  GL  +Q     F  L++   P    H  ++ I+P +Y ++WF+ +F
Sbjct: 459 DKY----LPGYYSAGLEAIQLDGEIFFALLRRVSPLAHRHLRRQRIDPVLYMTEWFMCIF 514

Query: 257 SYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL----PFEKLIHALRNFPE 312
           + + P+   LR+WD+F  EGVKI+F+V L LL +    + KL       + +  LRN P+
Sbjct: 515 ARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQ 574

Query: 313 DAMDPDKLL 321
             M  D L+
Sbjct: 575 QCMQEDFLV 583

Acts as GTPase-activating protein for RAB3A, RAB22A, RAB27A, AND RAB35. Does not act on RAB2A and RAB6A.

Mus musculus (taxid: 10090)

>sp|Q9Y3P9|RBGP1_HUMAN Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 17/291 (5%)

Query: 47  EREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLL 106
           E  E+ +  W +++    S W   +  +P  +   +R G+P+ LRG VWQL++G  +   
Sbjct: 532 ECAEKILETWGELL----SKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAGCHN--- 584

Query: 107 MNPGVYEQ--LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDR 164
            N  + E+  +LI + S  +  I RDI+RTFP+H +F+   G GQ SLY + KAYSVYD 
Sbjct: 585 -NDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDE 643

Query: 165 DVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDH 224
           ++GY QG  FLA +LLL+M EE AF ++V ++       +  L++     +    +Q + 
Sbjct: 644 EIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIM---FDYGLRELFKQNFEDLHCKFYQLER 700

Query: 225 LVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVG 284
           L++E++P L  HF    +   MYASQWF+T+F+  FP ++   I D+ L EG+ ++F V 
Sbjct: 701 LMQEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVA 760

Query: 285 LALLTYCHDDLIKLPFEKLIHALR-NFPE---DAMDPDKLLPVAYSIKVSK 331
           L LL    DDL+   FE  +   R   P+      +  KL+ +A ++K+S+
Sbjct: 761 LGLLKTSKDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACNMKISQ 811

May act as a GTPase-activating protein of RAB6A. May play a role in microtubule nucleation by centrosome. May participate in a RAB6A-mediated pathway involved in the metaphase-anaphase transition.

Homo sapiens (taxid: 9606)

>sp|Q5RAN1|RBGP1_PONAB Rab GTPase-activating protein 1 OS=Pongo abelii GN=RABGAP1 PE=2 SV=1

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 17/291 (5%)

Query: 47  EREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLL 106
           E  E+ +  W +++    S W   +  +P  +   +R G+P+ LRG VWQL++G  +   
Sbjct: 532 ECAEKILETWGELL----SKWHLNLNVRPKQLSSLVRNGVPEALRGEVWQLLAGCHN--- 584

Query: 107 MNPGVYEQ--LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDR 164
            N  + E+  +LI + S  +  I RDI+RTFP+H +F+   G GQ SLY + KAYSVYD 
Sbjct: 585 -NDHLVEKYRILITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDSLYKICKAYSVYDE 643

Query: 165 DVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDH 224
           ++GY QG  FLA +LLL+M EE AF ++V ++       +  L++     +    +Q + 
Sbjct: 644 EIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIM---FDYGLRELFKQNFEDLHCKFYQLER 700

Query: 225 LVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVG 284
           L++E++P L  HF    +   MYASQWF+T+F+  FP ++   I D+ L EG+ ++F V 
Sbjct: 701 LMQEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLCEGISVIFNVA 760

Query: 285 LALLTYCHDDLIKLPFEKLIHALR-NFPE---DAMDPDKLLPVAYSIKVSK 331
           L LL    DDL+   FE  +   R   P+      +  KL+ +A ++K+S+
Sbjct: 761 LGLLKTSKDDLLLTDFEGALKFFRVQLPKRYRSEENAKKLMELACNMKISQ 811

May act as a GTPase-activating protein of RAB6A. May play a role in microtubule nucleation by centrosome. May participate in a RAB6A-mediated pathway involved in the metaphase-anaphase transition.

Pongo abelii (taxid: 9601)

>sp|Q5RCW6|RBG1L_PONAB Rab GTPase-activating protein 1-like OS=Pongo abelii GN=RABGAP1L PE=2 SV=1

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/261 (37%), Positives = 148/261 (56%), Gaps = 13/261 (4%)

Query: 50  ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNP 109
           E+ +  W +++G     W   +  +P  +   ++ G+P+ LR  VWQL++G  D    N 
Sbjct: 507 EKILYSWGELLG----KWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHD----NQ 558

Query: 110 GVYEQ--LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVG 167
            + ++  +LI + S  E  I RDI RTFP+H +F+   G GQ SLY + KAYSVYD D+G
Sbjct: 559 AMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIG 618

Query: 168 YVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVK 227
           Y QG  FLA +LLL+M EE AF ++V ++       +  LY+     +    +Q + L++
Sbjct: 619 YCQGQSFLAAVLLLHMPEEQAFCVLVKIM---YDYGLRDLYKNNFEDLHCKFYQLERLMQ 675

Query: 228 EHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL 287
           E LP L  HF+   +   MYASQWF+T+F+  FP  +   I D+ L EG+ I+F V LAL
Sbjct: 676 EQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALAL 735

Query: 288 LTYCHDDLIKLPFEKLIHALR 308
           L    +DL++  FE  +   R
Sbjct: 736 LKTSKEDLLQADFEGALKFFR 756

Pongo abelii (taxid: 9601)

>sp|Q5R372|RBG1L_HUMAN Rab GTPase-activating protein 1-like OS=Homo sapiens GN=RABGAP1L PE=1 SV=1

 Score =  188 bits (477), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/261 (37%), Positives = 148/261 (56%), Gaps = 13/261 (4%)

Query: 50  ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNP 109
           E+ +  W +++G     W   +  +P  +   ++ G+P+ LR  VWQL++G  D    N 
Sbjct: 507 EKILYSWGELLG----KWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHD----NQ 558

Query: 110 GVYEQ--LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVG 167
            + ++  +LI + S  E  I RDI RTFP+H +F+   G GQ SLY + KAYSVYD D+G
Sbjct: 559 AMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIG 618

Query: 168 YVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVK 227
           Y QG  FLA +LLL+M EE AF ++V ++       +  LY+     +    +Q + L++
Sbjct: 619 YCQGQSFLAAVLLLHMPEEQAFCVLVKIM---YDYGLRDLYRNNFEDLHCKFYQLERLMQ 675

Query: 228 EHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL 287
           E LP L  HF+   +   MYASQWF+T+F+  FP  +   I D+ L EG+ I+F V LAL
Sbjct: 676 EQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALAL 735

Query: 288 LTYCHDDLIKLPFEKLIHALR 308
           L    +DL++  FE  +   R
Sbjct: 736 LKTSKEDLLQADFEGALKFFR 756

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
359488352	371	PREDICTED: EVI5-like protein-like [Vitis	0.980	0.964	0.868	0.0
298204409	358	unnamed protein product [Vitis vinifera]	0.980	1.0	0.868	0.0
225451903	351	PREDICTED: EVI5-like protein-like isofor	0.961	1.0	0.857	1e-180
449450988	361	PREDICTED: EVI5-like protein-like [Cucum	0.980	0.991	0.847	1e-179
255569989	354	ecotropic viral integration site, putati	0.964	0.994	0.857	1e-178
118486299	354	unknown [Populus trichocarpa]	0.964	0.994	0.852	1e-176
217073940	367	unknown [Medicago truncatula] gi|3885179	0.972	0.967	0.838	1e-174
363806878	366	uncharacterized protein LOC100778662 [Gl	0.972	0.969	0.846	1e-173
15237222	356	plant adhesion molecule 1 [Arabidopsis t	0.967	0.991	0.824	1e-172
356545572	366	PREDICTED: ecotropic viral integration s	0.967	0.964	0.845	1e-171

>gi|359488352|ref|XP_003633745.1| PREDICTED: EVI5-like protein-like [Vitis vinifera]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/358 (86%), Positives = 336/358 (93%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           ME++RIDD EPGP+PSP+P+DRFGF+KQE  +  EG+ KSR+A   EREERRVRKWRKMI
Sbjct: 14  MERKRIDDYEPGPIPSPKPLDRFGFIKQEFNTSPEGLSKSRTANDHEREERRVRKWRKMI 73

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           G+GGSDWKHYVRRKP+VVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IYET
Sbjct: 74  GIGGSDWKHYVRRKPNVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYET 133

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL
Sbjct: 134 SASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 193

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWLMVALLKGAVHAPMEGLY VGLPLVQQYLFQF++LV+E LP+LGEHFT+E
Sbjct: 194 LYMSEEDAFWLMVALLKGAVHAPMEGLYLVGLPLVQQYLFQFENLVREQLPRLGEHFTQE 253

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           +I+PSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVF+VGLALL YCHDDL KLPF
Sbjct: 254 VISPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFQVGLALLKYCHDDLTKLPF 313

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVK 358
           EKLIHALRNFPEDAM+PD LLP+AYSIKVSKRLEELK  YEKQN K  QS E++GK K
Sbjct: 314 EKLIHALRNFPEDAMNPDTLLPMAYSIKVSKRLEELKLEYEKQNGKQAQSGESSGKQK 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204409|emb|CBI16889.3| unnamed protein product [Vitis vinifera]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/358 (86%), Positives = 336/358 (93%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           ME++RIDD EPGP+PSP+P+DRFGF+KQE  +  EG+ KSR+A   EREERRVRKWRKMI
Sbjct: 1   MERKRIDDYEPGPIPSPKPLDRFGFIKQEFNTSPEGLSKSRTANDHEREERRVRKWRKMI 60

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           G+GGSDWKHYVRRKP+VVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IYET
Sbjct: 61  GIGGSDWKHYVRRKPNVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYET 120

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL
Sbjct: 121 SASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWLMVALLKGAVHAPMEGLY VGLPLVQQYLFQF++LV+E LP+LGEHFT+E
Sbjct: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYLVGLPLVQQYLFQFENLVREQLPRLGEHFTQE 240

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           +I+PSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVF+VGLALL YCHDDL KLPF
Sbjct: 241 VISPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFQVGLALLKYCHDDLTKLPF 300

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVK 358
           EKLIHALRNFPEDAM+PD LLP+AYSIKVSKRLEELK  YEKQN K  QS E++GK K
Sbjct: 301 EKLIHALRNFPEDAMNPDTLLPMAYSIKVSKRLEELKLEYEKQNGKQAQSGESSGKQK 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451903|ref|XP_002282748.1| PREDICTED: EVI5-like protein-like isoform 2 [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/358 (85%), Positives = 332/358 (92%), Gaps = 7/358 (1%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           ME++RIDD EPGP+PSP+P+DRFGF+KQE  +  EG+ KSR+       ERRVRKWRKMI
Sbjct: 1   MERKRIDDYEPGPIPSPKPLDRFGFIKQEFNTSPEGLSKSRT-------ERRVRKWRKMI 53

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           G+GGSDWKHYVRRKP+VVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IYET
Sbjct: 54  GIGGSDWKHYVRRKPNVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYET 113

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL
Sbjct: 114 SASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 173

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWLMVALLKGAVHAPMEGLY VGLPLVQQYLFQF++LV+E LP+LGEHFT+E
Sbjct: 174 LYMSEEDAFWLMVALLKGAVHAPMEGLYLVGLPLVQQYLFQFENLVREQLPRLGEHFTQE 233

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           +I+PSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVF+VGLALL YCHDDL KLPF
Sbjct: 234 VISPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFQVGLALLKYCHDDLTKLPF 293

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVK 358
           EKLIHALRNFPEDAM+PD LLP+AYSIKVSKRLEELK  YEKQN K  QS E++GK K
Sbjct: 294 EKLIHALRNFPEDAMNPDTLLPMAYSIKVSKRLEELKLEYEKQNGKQAQSGESSGKQK 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450988|ref|XP_004143244.1| PREDICTED: EVI5-like protein-like [Cucumis sativus] gi|449482494|ref|XP_004156299.1| PREDICTED: EVI5-like protein-like [Cucumis sativus]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 305/360 (84%), Positives = 331/360 (91%), Gaps = 2/360 (0%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           ME+  IDD EPGP+PSPR +DRFGF+K+EH S  + + K+RS +  EREERRVRKWRKMI
Sbjct: 1   MERNTIDDFEPGPLPSPRQLDRFGFLKKEHNSSSDALTKNRSTVN-EREERRVRKWRKMI 59

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           GVGGSDWKHYVRRKP+VVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IYET
Sbjct: 60  GVGGSDWKHYVRRKPNVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYET 119

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSV+DR+VGYVQGMGFLAGLLL
Sbjct: 120 SASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRNVGYVQGMGFLAGLLL 179

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWL+VALLKGAVHAPMEGLY  GLPLVQQYLFQFD+LV+E LPKLGEHFT+E
Sbjct: 180 LYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFDNLVREQLPKLGEHFTRE 239

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           MINPSMYASQWFITVFSYSFPFHLALRIWDVFL+EGV IVFKVGLALL YCHDDL+KLPF
Sbjct: 240 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVTIVFKVGLALLKYCHDDLVKLPF 299

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQS-AETNGKVKQ 359
           EKLIHALRNFPEDAMDPD LLP+AYSIKVSK+LEE K LYE ++ K +Q   + NGK +Q
Sbjct: 300 EKLIHALRNFPEDAMDPDTLLPMAYSIKVSKQLEESKQLYESKHGKEIQDEGDANGKQEQ 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569989|ref|XP_002525957.1| ecotropic viral integration site, putative [Ricinus communis] gi|223534689|gb|EEF36381.1| ecotropic viral integration site, putative [Ricinus communis]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/359 (85%), Positives = 327/359 (91%), Gaps = 7/359 (1%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           MEK+ IDD E GP+PSP+P+DRFGFVKQE  +  EG+ K R       EER+VRKWRKMI
Sbjct: 1   MEKKGIDDYELGPLPSPKPLDRFGFVKQELNNAPEGLNKGR-------EERKVRKWRKMI 53

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IYET
Sbjct: 54  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYET 113

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL
Sbjct: 114 SASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 173

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWL+VALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLV+EH+PKLGEHFT+E
Sbjct: 174 LYMSEEDAFWLLVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVREHMPKLGEHFTQE 233

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           MINPSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVFKVGLALL YCHDDL+KLPF
Sbjct: 234 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLVKLPF 293

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVKQ 359
           EKLIHALRNFPEDAMDPD LLP+AYS KVSKRLEELK  Y+K+N   ++  E     KQ
Sbjct: 294 EKLIHALRNFPEDAMDPDTLLPMAYSFKVSKRLEELKHEYDKRNGNPIEPPEIKENQKQ 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486299|gb|ABK94991.1| unknown [Populus trichocarpa]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 306/359 (85%), Positives = 325/359 (90%), Gaps = 7/359 (1%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           MEK+ IDD EPGP+PSPR +DRFGF+KQE  +P +G+ K R       EERRVRKWRKMI
Sbjct: 1   MEKKIIDDYEPGPLPSPRKMDRFGFLKQEINNPPDGLAKGR-------EERRVRKWRKMI 53

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IYET
Sbjct: 54  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYET 113

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL
Sbjct: 114 SASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 173

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWL+VALLKGAVHAPMEGLYQVGLPLVQQYL  FD L+KEH+PKLGEHFT+E
Sbjct: 174 LYMSEEDAFWLLVALLKGAVHAPMEGLYQVGLPLVQQYLCLFDRLMKEHMPKLGEHFTQE 233

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           MINPSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVFKVGLALL Y HDDL+KLPF
Sbjct: 234 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYRHDDLVKLPF 293

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGKVKQ 359
           EKLIHALRNFP+DAMDPD LLP+AYSIKVS+RLEELK  Y K++ K   S E  G  KQ
Sbjct: 294 EKLIHALRNFPDDAMDPDTLLPMAYSIKVSRRLEELKQEYNKKDGKPSLSIEIKGNQKQ 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073940|gb|ACJ85330.1| unknown [Medicago truncatula] gi|388517975|gb|AFK47049.1| unknown [Medicago truncatula]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/359 (83%), Positives = 329/359 (91%), Gaps = 4/359 (1%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIK-SRSAIQFER--EERRVRKWR 57
           MEK+R DD EP PVP PR +DRFGF+KQ+  +  EGV K SRSA ++ER  E RRVRKWR
Sbjct: 1   MEKKRTDDYEPSPVPEPRALDRFGFIKQD-ANTSEGVAKTSRSAHEYERIKEGRRVRKWR 59

Query: 58  KMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLI 117
           KMIGVGGSDWKHY+RRKP+VVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+I
Sbjct: 60  KMIGVGGSDWKHYLRRKPNVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVI 119

Query: 118 YETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAG 177
           YETS SELDIIR ISRTFPSHVFFQ+RHGPGQRSLYNVLKAYSV+DR+VGYVQGMGFLAG
Sbjct: 120 YETSASELDIIRGISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVFDREVGYVQGMGFLAG 179

Query: 178 LLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHF 237
           LLLLYMSEEDAFWL+VALLKGAVHAPMEGLY  GLPLVQQYLFQF+ LV+EHLPKLGEHF
Sbjct: 180 LLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFERLVREHLPKLGEHF 239

Query: 238 TKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIK 297
           T+EMINPSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVFKVGLALL YCHDDL+K
Sbjct: 240 TQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLVK 299

Query: 298 LPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGK 356
           LPFEKLIHAL+NFPEDAM+PD LLP+AYSIK+ KRLEEL+  YEK+N K+ +S E + K
Sbjct: 300 LPFEKLIHALKNFPEDAMNPDTLLPLAYSIKIRKRLEELRQEYEKKNGKMSRSGELSEK 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806878|ref|NP_001242553.1| uncharacterized protein LOC100778662 [Glycine max] gi|255639871|gb|ACU20228.1| unknown [Glycine max]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 303/358 (84%), Positives = 328/358 (91%), Gaps = 3/358 (0%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERR--VRKWRK 58
           MEK+R+DD EPGPVPSPR +DRFGFVKQ   +  EG++K+RSA ++ER      VRKWRK
Sbjct: 1   MEKKRLDDYEPGPVPSPRALDRFGFVKQNVNT-SEGLVKNRSAYEYERYREERRVRKWRK 59

Query: 59  MIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY 118
           MIGVGGSDWKHY+RRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IY
Sbjct: 60  MIGVGGSDWKHYLRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIY 119

Query: 119 ETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGL 178
           ETS SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSV+DRDVGYVQGMGFLAGL
Sbjct: 120 ETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFLAGL 179

Query: 179 LLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFT 238
           LLLYMSEEDAFWL+VALLKGAVHAPMEGLY  GLPLVQQYLFQF+  V+EHLPKLGEHF+
Sbjct: 180 LLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFECSVREHLPKLGEHFS 239

Query: 239 KEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL 298
            EMINPSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVFKVGLALL YCHDDLIKL
Sbjct: 240 YEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLIKL 299

Query: 299 PFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETNGK 356
           PFEKLIHAL+NFPE AM+PD LLP+AYSIK+SKRLEELK  YEK+N K+ +S E + K
Sbjct: 300 PFEKLIHALKNFPEGAMNPDTLLPLAYSIKISKRLEELKQEYEKKNGKIRRSGELSEK 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237222|ref|NP_197097.1| plant adhesion molecule 1 [Arabidopsis thaliana] gi|3511223|gb|AAC33763.1| plant adhesion molecule 1 [Arabidopsis thaliana] gi|9755639|emb|CAC01792.1| plant adhesion molecule 1 (PAM1) [Arabidopsis thaliana] gi|21593500|gb|AAM65467.1| plant adhesion molecule 1 (PAM1) [Arabidopsis thaliana] gi|332004842|gb|AED92225.1| plant adhesion molecule 1 [Arabidopsis thaliana]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 291/353 (82%), Positives = 320/353 (90%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMI 60
           ME++R  D EPGPVP   PVDRFGF+KQEHGS  +   K++S+I +E+EE+RV KWRKMI
Sbjct: 1   MERKRTKDSEPGPVPLLVPVDRFGFLKQEHGSSPQRFTKTKSSINYEKEEKRVTKWRKMI 60

Query: 61  GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
           G GGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVY QL+IYET
Sbjct: 61  GTGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYVQLVIYET 120

Query: 121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
           S SELDIIRDISRTFPSHVFFQ+RHGPGQRSLYNVLKAYSVYDRDVGYVQGMGF+AGLLL
Sbjct: 121 SASELDIIRDISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLL 180

Query: 181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
           LYMSEEDAFWL+VALLKGAVH+P+EGLYQ GLPLVQQYL QFD LV+E +PKLGEHFT+E
Sbjct: 181 LYMSEEDAFWLLVALLKGAVHSPIEGLYQAGLPLVQQYLLQFDQLVRELMPKLGEHFTQE 240

Query: 241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
           MINPSMYASQWFITVFSYS PFH ALRIWDVFL EGVKIVFKVGLALL +CHDDL+KLPF
Sbjct: 241 MINPSMYASQWFITVFSYSLPFHSALRIWDVFLAEGVKIVFKVGLALLKHCHDDLLKLPF 300

Query: 301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAET 353
           E+L+HALRNFPEDAMDPD LLP+AYSIKVSKRLEE+K   +K   K  Q+A++
Sbjct: 301 EELMHALRNFPEDAMDPDTLLPLAYSIKVSKRLEEMKQDCDKAVAKPTQTAKS 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545572|ref|XP_003541213.1| PREDICTED: ecotropic viral integration site 5 protein homolog [Glycine max]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 301/356 (84%), Positives = 328/356 (92%), Gaps = 3/356 (0%)

Query: 1   MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERR--VRKWRK 58
           MEK+R+DD EPGPVPSPR +DRFGFVKQ+  +  EG+ K+R+A ++ER      VRKWRK
Sbjct: 1   MEKKRLDDYEPGPVPSPRALDRFGFVKQDVNT-SEGLFKNRAAYEYERYREERRVRKWRK 59

Query: 59  MIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY 118
           MIGVGGSDWKHY+RRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+IY
Sbjct: 60  MIGVGGSDWKHYLRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIY 119

Query: 119 ETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGL 178
           ETS SELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSV+DRDVGYVQGMGFLAGL
Sbjct: 120 ETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRDVGYVQGMGFLAGL 179

Query: 179 LLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFT 238
           LLLYMSEEDAFWL+VALLKGAVHAPMEGLY  GLPLVQQYLFQF+ LV+EHL KLGEHF+
Sbjct: 180 LLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFECLVREHLLKLGEHFS 239

Query: 239 KEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL 298
            EMINPSMYASQWFITVFSYSFPFHLALRIWDVFL+EGVKIVFKVGLALL YCHDDLIKL
Sbjct: 240 NEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLIKL 299

Query: 299 PFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAETN 354
           PFEKLI+AL+NFPEDAM+PD LLP+AYSIK+SKRLEELK  YEK+N K+ +S E +
Sbjct: 300 PFEKLIYALKNFPEDAMNPDTLLPLAYSIKISKRLEELKQEYEKKNGKIRRSRELS 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2146117	356	PAM1 "plant adhesion molecule	0.967	0.991	0.813	6.3e-156
TAIR|locus:2076949	353	AT3G02460 [Arabidopsis thalian	0.956	0.988	0.809	6e-151
UNIPROTKB|E1C8N6	715	EVI5 "Uncharacterized protein"	0.772	0.394	0.380	6.9e-53
ZFIN|ZDB-GENE-061207-24	996	si:ch211-239f4.1 "si:ch211-239	0.772	0.283	0.390	7.8e-52
UNIPROTKB|I3LCR3	656	LOC100622995 "Uncharacterized	0.772	0.429	0.383	3.1e-51
UNIPROTKB|F1SA82	796	EVI5L "Uncharacterized protein	0.764	0.350	0.381	4.1e-51
UNIPROTKB|E2RNZ2	798	EVI5L "Uncharacterized protein	0.764	0.349	0.381	4.2e-51
UNIPROTKB|I3L7Q5	807	EVI5L "Uncharacterized protein	0.764	0.345	0.381	4.8e-51
UNIPROTKB|E2RQ17	814	EVI5L "Uncharacterized protein	0.764	0.342	0.381	5.2e-51
UNIPROTKB|A5PK17	807	EVI5L "EVI5L protein" [Bos tau	0.764	0.345	0.378	6.1e-51

TAIR|locus:2146117 PAM1 "plant adhesion molecule 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1520 (540.1 bits), Expect = 6.3e-156, P = 6.3e-156
 Identities = 287/353 (81%), Positives = 314/353 (88%)

Query:     1 MEKRRIDDCEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSRSAIQFXXXXXXVRKWRKMI 60
             ME++R  D EPGPVP   PVDRFGF+KQEHGS  +   K++S+I +      V KWRKMI
Sbjct:     1 MERKRTKDSEPGPVPLLVPVDRFGFLKQEHGSSPQRFTKTKSSINYEKEEKRVTKWRKMI 60

Query:    61 GVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYET 120
             G GGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVY QL+IYET
Sbjct:    61 GTGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYVQLVIYET 120

Query:   121 STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLL 180
             S SELDIIRDISRTFPSHVFFQ+RHGPGQRSLYNVLKAYSVYDRDVGYVQGMGF+AGLLL
Sbjct:   121 SASELDIIRDISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLL 180

Query:   181 LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKE 240
             LYMSEEDAFWL+VALLKGAVH+P+EGLYQ GLPLVQQYL QFD LV+E +PKLGEHFT+E
Sbjct:   181 LYMSEEDAFWLLVALLKGAVHSPIEGLYQAGLPLVQQYLLQFDQLVRELMPKLGEHFTQE 240

Query:   241 MINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPF 300
             MINPSMYASQWFITVFSYS PFH ALRIWDVFL EGVKIVFKVGLALL +CHDDL+KLPF
Sbjct:   241 MINPSMYASQWFITVFSYSLPFHSALRIWDVFLAEGVKIVFKVGLALLKHCHDDLLKLPF 300

Query:   301 EKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAET 353
             E+L+HALRNFPEDAMDPD LLP+AYSIKVSKRLEE+K   +K   K  Q+A++
Sbjct:   301 EELMHALRNFPEDAMDPDTLLPLAYSIKVSKRLEEMKQDCDKAVAKPTQTAKS 353

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

TAIR|locus:2076949 AT3G02460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
 Identities = 285/352 (80%), Positives = 308/352 (87%)

Query:     1 MEKRRIDD-CEPGPVPSPRPVDRFGFVKQEHGSPHEGVIKSR--SAIQFXXXXXXVRKWR 57
             M ++R ++  E GP  S  PVDRFGF+KQEH +  E   KS+  S+         VRKWR
Sbjct:     1 MSRKRTENGSESGPATSHVPVDRFGFLKQEHANSPERFSKSKTTSSTDHDREERKVRKWR 60

Query:    58 KMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLI 117
             KMIGVGGSDWKHYVRRKP+VV+RRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQL+I
Sbjct:    61 KMIGVGGSDWKHYVRRKPNVVRRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVI 120

Query:   118 YETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAG 177
             YETS SELDIIRDISRTFPSHVFFQ+RHGPGQRSLYNVLKAYSVYDRDVGYVQGMGF+AG
Sbjct:   121 YETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAG 180

Query:   178 LLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHF 237
             LLLLYMSEEDAFWL+VALLKGAVHAPMEGLY  GLPLVQQYLFQ + LVKE +PKLGEHF
Sbjct:   181 LLLLYMSEEDAFWLLVALLKGAVHAPMEGLYHAGLPLVQQYLFQLESLVKELIPKLGEHF 240

Query:   238 TKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIK 297
             T+EMINPSMYASQWFITVFSYSFPF LALRIWDVFL EGVKIVFKVGLALL YC D+L+K
Sbjct:   241 TQEMINPSMYASQWFITVFSYSFPFPLALRIWDVFLSEGVKIVFKVGLALLKYCQDELVK 300

Query:   298 LPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQ 349
             LPFEKLIHAL+ FPEDAM+PD LLP+AYSIKVSKRLEEL   Y+K N K VQ
Sbjct:   301 LPFEKLIHALKTFPEDAMNPDTLLPLAYSIKVSKRLEELTLEYQKTNAKPVQ 352

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|E1C8N6 EVI5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 526 (190.2 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 111/292 (38%), Positives = 183/292 (62%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+   ++K   VK  +RKGIP   R +VWQL+  ++ + + +   Y +LL   TS  E
Sbjct:    99 NEWEDVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQ--YSELLKM-TSPCE 155

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
               I RDI+RT+P H FF+++   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   156 KLIRRDIARTYPEHDFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 215

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+ +++EHLP+L  HF  +  + 
Sbjct:   216 EEEAFCVFVKLMQDY---RLRELFKPSMAELGLCMYQFECMIQEHLPELYVHFQSQSFHT 272

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A RI+D+F+ EG++IVF+VGLALL     +L++L  E ++
Sbjct:   273 SMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQTNQAELLQLDMEGML 332

Query:   305 -HALRNFPEDA-MDPDKLLPVAYSIKVS-KRLEELKSLYEK-QNKKVVQSAE 352
              H  +  P      PDKL+  +Y +K + K++++L+  Y   + K++ +  E
Sbjct:   333 QHFQKVIPHQFDSGPDKLIQASYQVKYNAKKMKKLEKEYTTIKTKEMEEQVE 384

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-061207-24 si:ch211-239f4.1 "si:ch211-239f4.1" [Danio rerio (taxid:7955)]

 Score = 546 (197.3 bits), Expect = 7.8e-52, P = 7.8e-52
 Identities = 114/292 (39%), Positives = 182/292 (62%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W  + R+K  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +   +
Sbjct:   130 NEWDEWRRKKDKLLKELIRKGIPHHFRAIVWQLLCNATDMPVKNQ--YSELLKMSSPCEK 187

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   188 L-IRRDIARTYPEHDFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 246

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+HL++E LP+L  HF  +  + 
Sbjct:   247 EEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEHLLQEQLPELNVHFRSQSFHT 303

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F    P  +A RI+D+F++EG++I+F+VG+A+L Y   DLI+L  E + 
Sbjct:   304 SMYASSWFLTLFLTFLPLPIATRIFDIFMYEGLEIIFRVGIAILQYNQTDLIQLDMEGMS 363

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKVS-KRLEELKSLYEK-QNKKVVQSAE 352
                +       D  PDKL+  AY +K + KR+++L+  Y   +NK++ +  E
Sbjct:   364 QHFQKVIPHQFDSCPDKLILRAYQVKYNPKRMKKLEKEYTTIKNKEMEEQIE 415

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|I3LCR3 LOC100622995 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 112/292 (38%), Positives = 182/292 (62%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+   ++K   VK  +RKGIP   R +VWQL+  ++ + + +   Y +LL   TS  E
Sbjct:    95 NEWEEVRKKKEKQVKELVRKGIPHHFRAIVWQLLCSAQSMPIKDQ--YSELLKM-TSPCE 151

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
               I RDI+RT+P H FF+++   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   152 KLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 211

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+ +++EHLP+L  HF  +  + 
Sbjct:   212 EEEAFCVFVKLMQDY---RLRELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHT 268

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A RI+D+F+ EG++IVF+VGLALL     +L++L  E ++
Sbjct:   269 SMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGML 328

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKV-SKRLEELKSLYEK-QNKKVVQSAE 352
                +       D  PDKL+  AY +K  SK++++L+  Y   + K++ +  E
Sbjct:   329 QHFQKVIPHQFDGGPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVE 380

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1SA82 EVI5L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 534 (193.0 bits), Expect = 4.1e-51, P = 4.1e-51
 Identities = 110/288 (38%), Positives = 178/288 (61%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+ + RRK  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +   +
Sbjct:    95 NEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQ--YSELLKMSSPCEK 152

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   153 L-IRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 211

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+++++E LP L  HF  +  + 
Sbjct:   212 EEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHT 268

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A R++D+F++EG++IVF+VGLALL     +L++L  E + 
Sbjct:   269 SMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMS 328

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQ 349
                +       D  PDKL+  AY +K + K+++ L+  Y     K ++
Sbjct:   329 QYFQRVIPHQFDSCPDKLILKAYQVKYNPKKMKRLEKEYAAMKSKEME 376

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|E2RNZ2 EVI5L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 534 (193.0 bits), Expect = 4.2e-51, P = 4.2e-51
 Identities = 110/288 (38%), Positives = 178/288 (61%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+ + RRK  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +   +
Sbjct:    95 NEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQ--YSELLKMSSPCEK 152

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   153 L-IRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 211

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+++++E LP L  HF  +  + 
Sbjct:   212 EEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHT 268

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A R++D+F++EG++IVF+VGLALL     +L++L  E + 
Sbjct:   269 SMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMS 328

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQ 349
                +       D  PDKL+  AY +K + K+++ L+  Y     K ++
Sbjct:   329 QYFQRVIPHQFDSCPDKLILKAYQVKYNPKKMKRLEKEYAAMKSKEME 376

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|I3L7Q5 EVI5L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 534 (193.0 bits), Expect = 4.8e-51, P = 4.8e-51
 Identities = 110/288 (38%), Positives = 178/288 (61%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+ + RRK  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +   +
Sbjct:    95 NEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQ--YSELLKMSSPCEK 152

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   153 L-IRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 211

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+++++E LP L  HF  +  + 
Sbjct:   212 EEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHT 268

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A R++D+F++EG++IVF+VGLALL     +L++L  E + 
Sbjct:   269 SMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMS 328

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQ 349
                +       D  PDKL+  AY +K + K+++ L+  Y     K ++
Sbjct:   329 QYFQRVIPHQFDSCPDKLILKAYQVKYNPKKMKRLEKEYAAMKSKEME 376

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|E2RQ17 EVI5L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 534 (193.0 bits), Expect = 5.2e-51, P = 5.2e-51
 Identities = 110/288 (38%), Positives = 178/288 (61%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+ + RRK  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +   +
Sbjct:   100 NEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQ--YSELLKMSSPCEK 157

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   158 L-IRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 216

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+++++E LP L  HF  +  + 
Sbjct:   217 EEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHT 273

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A R++D+F++EG++IVF+VGLALL     +L++L  E + 
Sbjct:   274 SMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIVFRVGLALLQVNQTELMQLDMEGMS 333

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQ 349
                +       D  PDKL+  AY +K + K+++ L+  Y     K ++
Sbjct:   334 QYFQRVIPHQFDSCPDKLILKAYQVKYNPKKMKRLEKEYAAMKSKEME 381

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|A5PK17 EVI5L "EVI5L protein" [Bos taurus (taxid:9913)]

 Score = 533 (192.7 bits), Expect = 6.1e-51, P = 6.1e-51
 Identities = 109/288 (37%), Positives = 178/288 (61%)

Query:    65 SDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSE 124
             ++W+ + RRK  ++K  IRKGIP   R +VWQL+  + D+ + N   Y +LL   +   +
Sbjct:    95 NEWEEWRRRKEKLLKELIRKGIPHHFRAIVWQLLCSATDMPVKNQ--YSELLKMSSPCEK 152

Query:   125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS 184
             L I RDI+RT+P H FF+ +   GQ  L+NV+KAYS+ DR+VGY QG  F+ GLLL+ M 
Sbjct:   153 L-IRRDIARTYPEHEFFKGQDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMP 211

Query:   185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
             EE+AF + V L++      +  L++  +  +   ++QF+++++E LP L  HF  +  + 
Sbjct:   212 EEEAFCVFVRLMQ---EYRLRELFKPSMAELGLCIYQFEYMLQEQLPDLNTHFRSQSFHT 268

Query:   245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLI 304
             SMYAS WF+T+F  +FP  +A R++D+F++EG++I+F+VGLALL     +L++L  E + 
Sbjct:   269 SMYASSWFLTLFLTTFPLPVATRVFDIFMYEGLEIIFRVGLALLQVNQTELMQLDMEGMS 328

Query:   305 HALRNFPEDAMD--PDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQ 349
                +       D  PDKL+  AY +K + K+++ L+  Y     K ++
Sbjct:   329 QYFQRVIPHQFDSCPDKLILKAYQVKYNPKKMKRLEKEYAAMKSKEME 376

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038132001 SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (358 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	2e-70
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	1e-67
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	9e-59

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score =  218 bits (558), Expect = 2e-70
 Identities = 82/212 (38%), Positives = 126/212 (59%), Gaps = 9/212 (4%)

Query: 88  DCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELD--IIRDISRTFPSHVFFQQRH 145
           D LRG VW+L+ G+         V +   + +   S  +  I +D+ RTFP H FF+   
Sbjct: 1   DSLRGEVWKLLLGNLSESKQRDSVSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFFKN-- 58

Query: 146 GPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLL-YMSEEDAFWLMVALLKGAVHAPM 204
           G GQ+ L  +LKAYS+Y+ DVGY QGM F+A  LLL  + EE+AFW  V+LL+      +
Sbjct: 59  GEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEY----LL 114

Query: 205 EGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHL 264
              +    P +Q+ L+ F+ L+K+H P+L +H  K  ++PS++AS+WF+T+F+   P   
Sbjct: 115 RDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLET 174

Query: 265 ALRIWDVFLFEGVKIVFKVGLALLTYCHDDLI 296
            LR+WD+FL  G   +F+V LA+L     +L+
Sbjct: 175 VLRLWDLFLEGGKFFLFRVALAILKRFRKELL 206

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score =  212 bits (541), Expect = 1e-67
 Identities = 95/220 (43%), Positives = 127/220 (57%), Gaps = 9/220 (4%)

Query: 82  IRKGIPDCLRGLVWQLISG-SRDLLLMNPGVYEQLLI--YETSTSELDII-RDISRTFPS 137
           +RKG+P  LRG+VW+L+          +  +Y +LL        S +  I +D+ RTFP 
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPDDKSIVHQIEKDLRRTFPE 60

Query: 138 HVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-SEEDAFWLMVALL 196
           H FFQ + GPGQ SL  VLKAY++Y+ +VGY QGM FLA  LLL M  EEDAFW +V L+
Sbjct: 61  HSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLM 120

Query: 197 KGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVF 256
           +          Y   +  +Q  L Q D LVKE+ P L +H     I PS+YA +WF+T+F
Sbjct: 121 ERYGP----NFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLF 176

Query: 257 SYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLI 296
           +   P  + LRIWDV   EG   +F+V LALL    D L+
Sbjct: 177 ARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score =  197 bits (503), Expect = 9e-59
 Identities = 101/253 (39%), Positives = 139/253 (54%), Gaps = 18/253 (7%)

Query: 67  WKHYVRRKP--------HVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY 118
           W  Y+   P          ++  IRKGIP+ LRG VW+ + G    L  NPG+YE+LL  
Sbjct: 186 WISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNL 245

Query: 119 ------ETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGM 172
                  T      I +D+SRTFP +  FQ        +L  VLKAYS+Y+ +VGYVQGM
Sbjct: 246 HREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGM 305

Query: 173 GFLAGLLLLYM-SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLP 231
            FLA  LLL + SEE AFW +V LLK      + G +   L  + + L   D LV+E  P
Sbjct: 306 NFLAAPLLLVLESEEQAFWCLVKLLKNYG---LPGYFLKNLSGLHRDLKVLDDLVEELDP 362

Query: 232 KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYC 291
           +L EH  +E +   M+A +WF+T+F   FP   ALRIWD    EG  ++F++ LA+L   
Sbjct: 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL 422

Query: 292 HDDLIKLPFEKLI 304
            D L+KL  ++L+
Sbjct: 423 RDKLLKLDSDELL 435

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	100.0
KOG2223	586	consensus Uncharacterized conserved protein, conta	100.0
KOG2222	848	consensus Uncharacterized conserved protein, conta	100.0
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	100.0
COG5210	496	GTPase-activating protein [General function predic	100.0
KOG4347	671	consensus GTPase-activating protein VRP [General f	100.0
KOG4567	370	consensus GTPase-activating protein [General funct	100.0
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	100.0
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	100.0
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	100.0
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	100.0
KOG2221	267	consensus PDZ-domain interacting protein EPI64, co	100.0
KOG1093	725	consensus Predicted protein kinase (contains TBC a	100.0
KOG2224	781	consensus Uncharacterized conserved protein, conta	99.94
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.92
KOG2595	395	consensus Predicted GTPase activator protein [Sign	99.92
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.89
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	99.86
KOG3636	669	consensus Uncharacterized conserved protein, conta	99.72
KOG2801	559	consensus Probable Rab-GAPs [Intracellular traffic	99.58
PF14961	1296	BROMI: Broad-minded protein	97.72
KOG1648	813	consensus Uncharacterized conserved protein, conta	97.56
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	89.22

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-55  Score=414.45  Aligned_cols=299  Identities=35%  Similarity=0.605  Sum_probs=252.9

Q ss_pred             CCCCcCCCccCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHhhccCCCcch--hcccChHHHHHHHhcCCCcchHHHHH
Q 040788           18 RPVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKH--YVRRKPHVVKRRIRKGIPDCLRGLVW   95 (365)
Q Consensus        18 ~~~d~yGf~~~~~~~~~~~~~~~~~~~~~~~e~~r~~kW~~~l~~~~~~~~~--~~~~~~~klk~~~~~GIP~~~R~~vW   95 (365)
                      ..+|.|||.......+...+.+..+.. ...+.+|..+|..++..+ ..|..  ......+++|+++|+|||+++|+.||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~k~~s~~-~~~~~r~~~~~~l~~~~~-~~~~~~~~~~~~s~elk~liRkGiP~~~R~~VW  166 (436)
T KOG2058|consen   89 NGFDQYSLQKLIGLPPSDGYLKWLSSY-LAYEERRQLRWELELQSN-IKLHSPNDFPPRSDELKRLIRKGIPPELRGEVW  166 (436)
T ss_pred             CcccccchhhcccCCcchhhhHHHHHh-hhhhhhHHHHHHHHhhhh-hcccccccccCCcHHHHHHHHcCCChhhhhHHH
Confidence            457999997755444322233333222 234667888999998765 44433  11134688999999999999999999


Q ss_pred             HHHhCCHhHhhcC-cchHHHHhhhccC---CChhHHhhhhhhcCCCc-cccccCCCcchHHHHHHHHHHHHhcCCCCccc
Q 040788           96 QLISGSRDLLLMN-PGVYEQLLIYETS---TSELDIIRDISRTFPSH-VFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQ  170 (365)
Q Consensus        96 ~~ll~~~~~~~~~-~~~y~~l~~~~~~---~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~Q  170 (365)
                      ..++|..  ...+ ++.|+.++.....   +...+|+.|+.||||++ +.|..+++.+...|+|||.|||.+||.|||||
T Consensus       167 ~~~~g~~--~~~~~~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQ  244 (436)
T KOG2058|consen  167 WVLSGAR--RQLNYPGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQ  244 (436)
T ss_pred             HHHhcch--hhccCchhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchh
Confidence            9999933  2334 8999999876544   35678999999999999 79988877789999999999999999999999


Q ss_pred             chhHHHHHHHHhcC-hhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchH
Q 040788          171 GMGFLAGLLLLYMS-EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYAS  249 (365)
Q Consensus       171 Gm~~ia~~ll~~~~-E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~  249 (365)
                      |||++||++|++|+ |++|||+|+.+++++    +++||.+++.|.+.+..+|+.+++..+|+|+.||...+++..+++.
T Consensus       245 GmNflAallLL~~~~EE~AFW~Lv~iie~~----lp~Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~  320 (436)
T KOG2058|consen  245 GMNFLAALLLLLMPSEEDAFWMLVALIENY----LPRYYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETL  320 (436)
T ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHHh----chhhcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeeh
Confidence            99999999999998 999999999999995    6779999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC-CHHHHHHHHhCCCCCCCChhHHHHHHhcC
Q 040788          250 QWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-PFEKLIHALRNFPEDAMDPDKLLPVAYSI  327 (365)
Q Consensus       250 ~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~-~~~~i~~~l~~~~~~~~d~~~li~~a~~l  327 (365)
                      +||+|+|++.+|.++++||||++|++|.+++|++|+|+++.++++|+++ +..+++.++..+.....+.+   +.|+..
T Consensus       321 ~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~~~~~~~---~~~f~~  396 (436)
T KOG2058|consen  321 PWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTKRSIDPD---QDAFGL  396 (436)
T ss_pred             hhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHhhhhh---hhhhhc
Confidence            9999999999999999999999999999999999999999999999995 67789999988877666666   555543

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.8e-43  Score=324.98  Aligned_cols=257  Identities=35%  Similarity=0.614  Sum_probs=224.4

Q ss_pred             CcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhh------------cc------CCChhHH
Q 040788           66 DWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY------------ET------STSELDI  127 (365)
Q Consensus        66 ~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~------------~~------~~~~~~I  127 (365)
                      +|+.-  ..+..++.++|.|||+.+||+||....|+.  .....+.|..++.+            ..      ..+..+|
T Consensus       284 nWe~m--~~SrR~relWwQGiP~~VRGkvW~laIGNe--l~it~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i  359 (586)
T KOG2223|consen  284 NWEDM--LKSRRVRELWWQGIPPSVRGKVWSLAIGNE--LNITYELFDIALARAKEREAKSLAEQMSNSAADREASVELI  359 (586)
T ss_pred             chHHH--HhhHHHHHHHHccCChhhcchhhHhhhCcc--cccCHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhhe
Confidence            66542  356789999999999999999999999975  22334455443321            11      1123469


Q ss_pred             hhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccc
Q 040788          128 IRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGL  207 (365)
Q Consensus       128 ~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~  207 (365)
                      ..|+.||||+..+|+. +|+..+.|..||.||+.|.|++||+|||++|||+|++.|++.+||.+|.+|+++.+   ...+
T Consensus       360 ~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd~~~AFiafANLLdkp~---q~Af  435 (586)
T KOG2223|consen  360 KLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMDLADAFIAFANLLDKPC---QQAF  435 (586)
T ss_pred             eechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCCcHHHHHHHHHHhccHH---HHHH
Confidence            9999999999999998 67999999999999999999999999999999999999999999999999999954   4678


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHH
Q 040788          208 YQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL  287 (365)
Q Consensus       208 ~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lai  287 (365)
                      |..+.+.+..++..|+..+++..|+|+.||.++++.|++|++.|+.+||+..+|++.+.||||+|+.+|..|+|+.+++|
T Consensus       436 f~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgI  515 (586)
T KOG2223|consen  436 FRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGI  515 (586)
T ss_pred             HhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHhhCCCHHHHHHHHhCCCCCCCChhHHHHHHhcCccc
Q 040788          288 LTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVS  330 (365)
Q Consensus       288 l~~~~~~Ll~~~~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~  330 (365)
                      |+++++.|+.+|+..+.++|..+|......+.+...|+-+..+
T Consensus       516 lklyepkLl~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~s  558 (586)
T KOG2223|consen  516 LKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQS  558 (586)
T ss_pred             HHHccchHhhhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhh
Confidence            9999999999999999999999998865556666666655443

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.9e-43  Score=325.87  Aligned_cols=326  Identities=26%  Similarity=0.448  Sum_probs=269.9

Q ss_pred             CCCCCCcCCCccCCCCCCchhhh-h-hhchHH---H-HHHHHHHHHHHHHhhcc------CCCcchhcc--cChHHHHHH
Q 040788           16 SPRPVDRFGFVKQEHGSPHEGVI-K-SRSAIQ---F-EREERRVRKWRKMIGVG------GSDWKHYVR--RKPHVVKRR   81 (365)
Q Consensus        16 ~~~~~d~yGf~~~~~~~~~~~~~-~-~~~~~~---~-~~e~~r~~kW~~~l~~~------~~~~~~~~~--~~~~klk~~   81 (365)
                      +..-.|+|||-+.++.-+|..-. . +.+++.   . ....+..-||...+...      ..-|+++..  .+.++++.+
T Consensus        86 p~~~fdefgfr~edddhdpnlg~eeetss~k~ls~pfledaq~klk~ia~le~~hke~~~dl~w~hi~~~~~ktdk~~~l  165 (848)
T KOG2222|consen   86 PEEFFDEFGFRKEDDDHDPNLGDEEETSSAKHLSEPFLEDAQHKLKLIAHLEDSHKEEAADLLWEHIDGMELKTDKFEEL  165 (848)
T ss_pred             hHHHHHhhCcccccccCCCCCCchhccchhhhccCcchhhhHHHHHHHHHHHHhhHHHHhhhhHHhhcccccchHHHHHH
Confidence            34457999998866553331100 0 111111   0 11223334787776432      224776543  456899999


Q ss_pred             Hhc-CCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhc---cCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHH
Q 040788           82 IRK-GIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYE---TSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLK  157 (365)
Q Consensus        82 ~~~-GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~---~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~  157 (365)
                      ++. |||+.+|+.+|+.|+|+-.........|+.++...   ......||++|+-|+.|++.+|...++.|.+.|+|||+
T Consensus       166 lkeggiphslr~~lw~rlsga~~kkk~ae~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk  245 (848)
T KOG2222|consen  166 LKEGGIPHSLRAFLWMRLSGALAKKKDAETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKNGEGIEALRRILK  245 (848)
T ss_pred             HHcCCCCcchhHHHHHHhhhhhhhhccccccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHh
Confidence            986 59999999999999998766666677899887643   34456899999999999999999999999999999999


Q ss_pred             HHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhh
Q 040788          158 AYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHF  237 (365)
Q Consensus       158 a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl  237 (365)
                      +.|...|++||||||..|+|.||+|+.|+.|||++.++++++++   .+||+..+-|++..-.+...|+.-+.|.+-+.|
T Consensus       246 ~ia~ifpdigycqg~gviva~lllf~~ee~afwmmaaiiedilp---~nfysqtllgiqaderv~~~li~~~l~~ldeal  322 (848)
T KOG2222|consen  246 CIAFIFPDIGYCQGMGVIVACLLLFCEEENAFWMMAAIIEDILP---ANFYSQTLLGIQADERVMHHLIACHLPDLDEAL  322 (848)
T ss_pred             hheeecCCcccccCccHHHHHHHHHhcchhHHHHHHHHHHHhcC---chhhhhhHhccchhHHHHHHHHHhccCchhHHH
Confidence            99999999999999999999999999999999999999999876   568899999999999999999999999999999


Q ss_pred             hhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC-----CHHHHHHHHhCCCC
Q 040788          238 TKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-----PFEKLIHALRNFPE  312 (365)
Q Consensus       238 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~-----~~~~i~~~l~~~~~  312 (365)
                      ++..+..++.+..||+|+|+..+.....+||||.||++|.-.+|++.++||++.+.+|...     +..+|+..|.++|.
T Consensus       323 ~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~  402 (848)
T KOG2222|consen  323 EDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPA  402 (848)
T ss_pred             HhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCc
Confidence            9999999999999999999999999999999999999999999999999999999988763     56789999999999


Q ss_pred             CCCChhHHHHHHhcCcc--ch-HHHHHHHHHHHHh
Q 040788          313 DAMDPDKLLPVAYSIKV--SK-RLEELKSLYEKQN  344 (365)
Q Consensus       313 ~~~d~~~li~~a~~l~~--~~-~l~~l~~~~~~~~  344 (365)
                      ...|++.++..|..+..  +. -|.+.+++...-.
T Consensus       403 ~vtdve~l~~~~~~~~~sis~~li~~~rkkh~a~l  437 (848)
T KOG2222|consen  403 EVTDVEKLFEQAGEFEFSISDHLIAEHRKKHLAVL  437 (848)
T ss_pred             hhhhHHHHHHHHhhcccchhHHHHHHHHHHhHHhh
Confidence            98999999999977655  43 3688887765533

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=100.00  E-value=4.7e-42  Score=303.22  Aligned_cols=192  Identities=45%  Similarity=0.816  Sum_probs=173.2

Q ss_pred             HhcCCCcchHHHHHHHHhCCHhHhhc-CcchHHHHhhhccCCC---hhHHhhhhhhcCCCccccccCCCcchHHHHHHHH
Q 040788           82 IRKGIPDCLRGLVWQLISGSRDLLLM-NPGVYEQLLIYETSTS---ELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLK  157 (365)
Q Consensus        82 ~~~GIP~~~R~~vW~~ll~~~~~~~~-~~~~y~~l~~~~~~~~---~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~  157 (365)
                      +++|||+++|+.||+.++|+...... .++.|+.+........   ..+|++||.||+|+++.|+.+.+.+++.|.|||.
T Consensus         1 ~~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~   80 (199)
T smart00164        1 VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK   80 (199)
T ss_pred             CCCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHH
Confidence            36899999999999999998754432 3788999887644332   4789999999999999999766679999999999


Q ss_pred             HHHHhcCCCCcccchhHHHHHHHHhc-ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhh
Q 040788          158 AYSVYDRDVGYVQGMGFLAGLLLLYM-SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEH  236 (365)
Q Consensus       158 a~~~~~p~igY~QGm~~ia~~ll~~~-~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~h  236 (365)
                      +|+.++|++||||||++|||+|+.++ +|++|||+|+++|+...    ..+|.++.+++...+..++.+++..+|+|++|
T Consensus        81 ~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~  156 (199)
T smart00164       81 AYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG----PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKH  156 (199)
T ss_pred             HHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC----cccCCCChHHHHHHHHHHHHHHHHHCHHHHHH
Confidence            99999999999999999999999999 59999999999999842    45688899999999999999999999999999


Q ss_pred             hhh-ccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcCh
Q 040788          237 FTK-EMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGV  277 (365)
Q Consensus       237 l~~-~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~  277 (365)
                      |.+ .|+++.+|+.+|++|+|++++|++.++||||.|+++|.
T Consensus       157 l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~  198 (199)
T smart00164      157 LKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS  198 (199)
T ss_pred             HHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence            996 99999999999999999999999999999999999995

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>COG5210 GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=1.2e-40  Score=331.48  Aligned_cols=245  Identities=40%  Similarity=0.663  Sum_probs=215.6

Q ss_pred             HHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhh----ccCC--Chh
Q 040788           52 RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIY----ETST--SEL  125 (365)
Q Consensus        52 r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~----~~~~--~~~  125 (365)
                      ....|.+.+..+   +.........+++.++++|||+.+|+.||..++|+......+++.|..+...    ....  ...
T Consensus       182 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~  258 (496)
T COG5210         182 ADKLWISYLDPN---PLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREAKIPTQEIIS  258 (496)
T ss_pred             HHHHHHHHHhcc---cchhhhhhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCchHHHHHHHHHHhcCCCcHHHHH
Confidence            345677766542   3333344567899999999999999999999999877777788888887642    1222  467


Q ss_pred             HHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcC-hhhHHHHHHHHHhcccCCCC
Q 040788          126 DIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS-EEDAFWLMVALLKGAVHAPM  204 (365)
Q Consensus       126 ~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~-E~~aF~~l~~l~~~~~~~~l  204 (365)
                      +|++|+.||||.+..|+.+.+...+.|+|||.||+.++|++|||||||++||+||.++. |++||||+++||...   .+
T Consensus       259 ~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~---~l  335 (496)
T COG5210         259 QIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNY---GL  335 (496)
T ss_pred             HHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---cc
Confidence            89999999999999998875555556999999999999999999999999999999998 999999999999952   48


Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHH
Q 040788          205 EGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVG  284 (365)
Q Consensus       205 ~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~  284 (365)
                      +++|..+++|+...+.++..+++..+|++|+||...|+...+|+++||+|+|++.+|++.++||||++|++|..+++.++
T Consensus       336 ~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~  415 (496)
T COG5210         336 PGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLA  415 (496)
T ss_pred             hhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHhhCCCHHH
Q 040788          285 LALLTYCHDDLIKLPFEK  302 (365)
Q Consensus       285 lail~~~~~~Ll~~~~~~  302 (365)
                      +|++...+..++.++.+.
T Consensus       416 ~~~l~~~~~~l~~~~~~~  433 (496)
T COG5210         416 LAILKLLRDKLLKLDSDE  433 (496)
T ss_pred             HHHHHhhhhhhhccCchh
Confidence            999999999999976543

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=100.00  E-value=2.2e-38  Score=305.51  Aligned_cols=307  Identities=28%  Similarity=0.495  Sum_probs=259.4

Q ss_pred             CCCcCCCccCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHH
Q 040788           19 PVDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLI   98 (365)
Q Consensus        19 ~~d~yGf~~~~~~~~~~~~~~~~~~~~~~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~l   98 (365)
                      ..+.+||........+.         ...++..+++.|++.+..+|.+...+   +..+++++++.|||...|+.+|..+
T Consensus       148 ~~~~~~~~~~~~~~~d~---------~~lre~~k~k~W~~~f~~~G~~~~~~---qt~~~~Klv~~gipe~~rgeiW~l~  215 (671)
T KOG4347|consen  148 GESALGFGEKGKYKIDP---------RALREWAKEKFWKKYFIKDGPNMNQI---QTILLRKLLYNGFPEDPRGEIWYLA  215 (671)
T ss_pred             ccchhcccccCCCCCCh---------HHHHHHHHHHHHHHHHHHhcccccHH---HHHHHHHHHHHhcCCChHHHHHHhh
Confidence            36888886544433221         12456677888999998888876654   2468999999999999999999999


Q ss_pred             hCCHhHhhcCcchHHHHhhhccC---CChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHH
Q 040788           99 SGSRDLLLMNPGVYEQLLIYETS---TSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFL  175 (365)
Q Consensus        99 l~~~~~~~~~~~~y~~l~~~~~~---~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~i  175 (365)
                      +|+-..+..+++.|.+++.....   -...+|++|++|..|.|+-|+.+  +|...|+|||.|||+.||+|||||-||.+
T Consensus       216 sGav~~~l~~~Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e--~gi~aLR~vL~Aya~~Np~vGYcQaMNIV  293 (671)
T KOG4347|consen  216 SGAVASLLLNPGEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSE--PGIAALRRVLTAYAWSNPEVGYCQAMNIV  293 (671)
T ss_pred             hHHHHHhhcCcHHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCC--CchhhHHHHHHhhhccCCchhHHHHHHHH
Confidence            99988888999999999876444   23467999999999999999976  78899999999999999999999999999


Q ss_pred             HHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHh
Q 040788          176 AGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITV  255 (365)
Q Consensus       176 a~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltl  255 (365)
                      ++.+++++.|++|||+++.+.+.    .+++||+....|...+..+|+.+++.+.|.++.|+...| ...+...+||+|+
T Consensus       294 ~s~lll~~~EEeafwll~~lce~----~ip~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlsl  368 (671)
T KOG4347|consen  294 GSELLLFCKEEEAFWLLSKLCEI----YIPDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSL  368 (671)
T ss_pred             HHhhhhhhccchHHHHHHHHHHH----hcccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHH
Confidence            99999999999999999999998    478999999999999999999999999999999999999 7788999999999


Q ss_pred             ccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC-CHHHHHHHHhCCCCCC---------------CChhH
Q 040788          256 FSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-PFEKLIHALRNFPEDA---------------MDPDK  319 (365)
Q Consensus       256 F~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~-~~~~i~~~l~~~~~~~---------------~d~~~  319 (365)
                      |...+|++..+||.|+||.+|.+++|.+|+||++.+.+.|+++ |..+++..+.++-..+               +....
T Consensus       369 Fls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~  448 (671)
T KOG4347|consen  369 FLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNAERILSATDDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQD  448 (671)
T ss_pred             HHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHHHhccCCCCCccccchhhhhHHHH
Confidence            9999999999999999999999999999999999999999985 5556777766531111               22446


Q ss_pred             HHHHHhcC--ccc-hHHHHHHHHHHHHh
Q 040788          320 LLPVAYSI--KVS-KRLEELKSLYEKQN  344 (365)
Q Consensus       320 li~~a~~l--~~~-~~l~~l~~~~~~~~  344 (365)
                      |+..||+-  .|+ ..|+.+|++++...
T Consensus       449 Ll~~ay~kFg~it~e~ie~~R~K~r~~v  476 (671)
T KOG4347|consen  449 LLATAYEKFGDITDELIEHLRKKHRLGV  476 (671)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            78888763  345 56788888876543

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=275.40  Aligned_cols=247  Identities=26%  Similarity=0.476  Sum_probs=204.7

Q ss_pred             HHHHHHHhcCCC--cchHHHHHHHHhCCHh--------HhhcCcchHHHHhhh-----------------ccC-------
Q 040788           76 HVVKRRIRKGIP--DCLRGLVWQLISGSRD--------LLLMNPGVYEQLLIY-----------------ETS-------  121 (365)
Q Consensus        76 ~klk~~~~~GIP--~~~R~~vW~~ll~~~~--------~~~~~~~~y~~l~~~-----------------~~~-------  121 (365)
                      +++++.+..|+|  ..+|+.+|+.++|.-.        ......+.|......                 +..       
T Consensus        26 kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhPls~  105 (370)
T KOG4567|consen   26 KELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHPLSL  105 (370)
T ss_pred             HHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCCCCC
Confidence            579999999999  6899999999998421        111222344433210                 000       


Q ss_pred             -------------CChhHHhhhhhhcCCCccccccCCC-------------------------cchHHHHHHHHHHHHhc
Q 040788          122 -------------TSELDIIRDISRTFPSHVFFQQRHG-------------------------PGQRSLYNVLKAYSVYD  163 (365)
Q Consensus       122 -------------~~~~~I~~Dv~Rt~~~~~~f~~~~~-------------------------~~~~~L~~IL~a~~~~~  163 (365)
                                   +.-.||++|+.||.|+..+|+....                         .......|||..||..|
T Consensus       106 ~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLN  185 (370)
T KOG4567|consen  106 GPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLN  185 (370)
T ss_pred             CchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcC
Confidence                         0125899999999999998875321                         12234689999999999


Q ss_pred             CCCCcccchhHHHHHHHHhc-----------ChhhHHHHHHHHHhcccCCCCccccC----CCcHHHHHHHHHHHHHHHH
Q 040788          164 RDVGYVQGMGFLAGLLLLYM-----------SEEDAFWLMVALLKGAVHAPMEGLYQ----VGLPLVQQYLFQFDHLVKE  228 (365)
Q Consensus       164 p~igY~QGm~~ia~~ll~~~-----------~E~~aF~~l~~l~~~~~~~~l~~~~~----~~~~~l~~~~~~~~~ll~~  228 (365)
                      |.|||+||||.|+|+++.++           .|+|||.||..+|..     ++++|.    .+..|+...+..+..++++
T Consensus       186 pGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMse-----irDnf~k~LDdS~~GI~~~Msr~~~~lk~  260 (370)
T KOG4567|consen  186 PGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSE-----IRDNFIKTLDDSVGGIHFLMSRLSELLKK  260 (370)
T ss_pred             CcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHH-----HHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            99999999999999999887           288999999999988     455553    4556788888999999999


Q ss_pred             hchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHhhCCCHHHHHHH
Q 040788          229 HLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFE--GVKIVFKVGLALLTYCHDDLIKLPFEKLIHA  306 (365)
Q Consensus       229 ~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~--g~~~l~~~~lail~~~~~~Ll~~~~~~i~~~  306 (365)
                      ++-+||.||++.++.|..|+++|+.+|++.+||++.++||||.+|++  +..+++++|.|++...++.|+.-||...++.
T Consensus       261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL  340 (370)
T KOG4567|consen  261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKL  340 (370)
T ss_pred             hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            99999999999999999999999999999999999999999999997  5677999999999999999999999999999


Q ss_pred             HhCCCCCCCChhHHHHHHhcCcc
Q 040788          307 LRNFPEDAMDPDKLLPVAYSIKV  329 (365)
Q Consensus       307 l~~~~~~~~d~~~li~~a~~l~~  329 (365)
                      |++.|..  |...++..|-+++-
T Consensus       341 LQ~yp~t--di~~~l~~A~~Lr~  361 (370)
T KOG4567|consen  341 LQNYPTT--DISKMLAVADSLRD  361 (370)
T ss_pred             HhcCCCC--CHHHHHHHHHHHHh
Confidence            9999976  99999988877763

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-38  Score=292.08  Aligned_cols=248  Identities=26%  Similarity=0.446  Sum_probs=213.2

Q ss_pred             hHHHHHHHhcCCCcchHHHHHHHHhCCHh--------HhhcCcchHHHHhhh---------ccCCChhHHhhhhhhcCCC
Q 040788           75 PHVVKRRIRKGIPDCLRGLVWQLISGSRD--------LLLMNPGVYEQLLIY---------ETSTSELDIIRDISRTFPS  137 (365)
Q Consensus        75 ~~klk~~~~~GIP~~~R~~vW~~ll~~~~--------~~~~~~~~y~~l~~~---------~~~~~~~~I~~Dv~Rt~~~  137 (365)
                      -++|+++++.|||..+|+.+|+.|+|.--        ........|..+..+         .......||.-|++|+.|.
T Consensus       178 ~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm~p~  257 (484)
T KOG1092|consen  178 LEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRMNPH  257 (484)
T ss_pred             HHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCCCcc
Confidence            47899999999999999999999998521        011111234433321         1123457899999999999


Q ss_pred             ccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----C---------------------hhhHHHH
Q 040788          138 HVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-----S---------------------EEDAFWL  191 (365)
Q Consensus       138 ~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-----~---------------------E~~aF~~  191 (365)
                      .++|..+  ..++.+.|||..++.++|..||+||.|+++.+++.++     +                     |.|||||
T Consensus       258 ~~l~q~~--~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyWC  335 (484)
T KOG1092|consen  258 IPLFQQK--IVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYWC  335 (484)
T ss_pred             ccchhhH--HHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHHH
Confidence            9999875  6899999999999999999999999998887776543     1                     7899999


Q ss_pred             HHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHH
Q 040788          192 MVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDV  271 (365)
Q Consensus       192 l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~  271 (365)
                      +..|++.     +.+.|...+||++.....++.|++..|+.+|+||+++|++..+|+++|+.|||.+++|+..++|+||.
T Consensus       336 lskLLD~-----IQDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDT  410 (484)
T KOG1092|consen  336 LSKLLDG-----IQDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDT  410 (484)
T ss_pred             HHHHHHH-----hhhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            9999998     78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC---hHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCCCCCC---ChhHHHHHHhcCcc
Q 040788          272 FLFEG---VKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAM---DPDKLLPVAYSIKV  329 (365)
Q Consensus       272 ~l~~g---~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~~~~~---d~~~li~~a~~l~~  329 (365)
                      |++|+   ..|+++||+|+|...+++|++.||.+++.+|+|+|...+   +.+.|+..||.++.
T Consensus       411 Y~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~  474 (484)
T KOG1092|consen  411 YLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKS  474 (484)
T ss_pred             hhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence            99995   467999999999999999999999999999999998654   56678889987653

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=100.00  E-value=1.5e-36  Score=270.67  Aligned_cols=202  Identities=37%  Similarity=0.665  Sum_probs=166.4

Q ss_pred             cchHHHHHHHHhCCHh-Hhh------cCcchHHH---HhhhccCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHH
Q 040788           88 DCLRGLVWQLISGSRD-LLL------MNPGVYEQ---LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLK  157 (365)
Q Consensus        88 ~~~R~~vW~~ll~~~~-~~~------~~~~~y~~---l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~  157 (365)
                      +++|+.||+.|+|... ...      .....+..   .......+...+|.+|+.||++++..+.  .+.+++.|.+||.
T Consensus         1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~--~~~~~~~l~~iL~   78 (214)
T PF00566_consen    1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK--NEQNQKSLERILS   78 (214)
T ss_dssp             -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--THHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--hcchHHHHHHHHH
Confidence            3689999999999842 000      00001111   1111223446789999999999654444  3478999999999


Q ss_pred             HHHHhcCCCCcccchhHHHHHHH-HhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhh
Q 040788          158 AYSVYDRDVGYVQGMGFLAGLLL-LYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEH  236 (365)
Q Consensus       158 a~~~~~p~igY~QGm~~ia~~ll-~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~h  236 (365)
                      +|+.++|++||||||+.|+++++ .+.+|++|||++++++..    .++++|.++.+++...+..++.++++++|++++|
T Consensus        79 ~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~  154 (214)
T PF00566_consen   79 AYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLNY----YLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNH  154 (214)
T ss_dssp             HHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHTH----HGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             Hhccccccccccchhhhhhhhhhhhcccccchhccccchhcc----cccccccccccccchhhhhHHHHHHhhhhhhhhh
Confidence            99999999999999999999999 567899999999999943    3788999999999999999999999999999999


Q ss_pred             hhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHH-HHHHHHHHHHHhHHHhh
Q 040788          237 FTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKI-VFKVGLALLTYCHDDLI  296 (365)
Q Consensus       237 l~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~-l~~~~lail~~~~~~Ll  296 (365)
                      |.+.|+++..|+.+|++|+|++.+|.+.++|||| ++.+|.++ ++++++|+++..+++||
T Consensus       155 l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~~~~~il  214 (214)
T PF00566_consen  155 LKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKYLRDQIL  214 (214)
T ss_dssp             HHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHHTHHHHH
T ss_pred             hhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999 77799887 99999999999999986

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=100.00  E-value=6.9e-36  Score=292.38  Aligned_cols=291  Identities=32%  Similarity=0.626  Sum_probs=250.3

Q ss_pred             HHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhH------hhcCcc-hHHHHhhhccCCChhH
Q 040788           54 RKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDL------LLMNPG-VYEQLLIYETSTSELD  126 (365)
Q Consensus        54 ~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~------~~~~~~-~y~~l~~~~~~~~~~~  126 (365)
                      ..|.+++.....    -.....+++-..++.|||.+-|+.+|..+.-....      ...+++ -|+.++..- .+....
T Consensus       550 ~~wek~~e~~~~----~~k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL-te~qhA  624 (948)
T KOG4436|consen  550 ETWEKILERTRI----KIKKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL-TEQQHA  624 (948)
T ss_pred             HHHHHHHHHhhh----cccccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH-HHHHHH
Confidence            368888864111    11235688999999999999999999998742211      122222 266665432 223356


Q ss_pred             HhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCcc
Q 040788          127 IIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEG  206 (365)
Q Consensus       127 I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~  206 (365)
                      |..|+.||||+|++|+..-|.|+..|+++|.||+..+|++|||||+.+|||+||++|+|+.||-++-.||..   ..++.
T Consensus       625 i~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~e~~afellk~LM~~---r~~r~  701 (948)
T KOG4436|consen  625 ILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMSEENAFELLKFLMFD---RGMRK  701 (948)
T ss_pred             HHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcchhhHHHHHHHHHHH---HhhHh
Confidence            889999999999999999999999999999999999999999999999999999999999999999999987   34788


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHH
Q 040788          207 LYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLA  286 (365)
Q Consensus       207 ~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~la  286 (365)
                      -|.+++..++..++.+.++++.++++||+|++++.|.|+.|+.+||+|+|+..||+..+.|++|.+|..|..++|.++++
T Consensus       702 qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~  781 (948)
T KOG4436|consen  702 QYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALS  781 (948)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhhCC-CHHHHHHHHhCC-CCCC-CChhHHHHHHhcCccchHHHHHHHHHHHHhhhhhhhhh
Q 040788          287 LLTYCHDDLIKL-PFEKLIHALRNF-PEDA-MDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSAE  352 (365)
Q Consensus       287 il~~~~~~Ll~~-~~~~i~~~l~~~-~~~~-~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~~~~~~~  352 (365)
                      ++..++..|+.+ ++++|+++++++ |... ...+.++...+++.+++.|.+++-+|..+++....+..
T Consensus       782 llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~emeki~~qvf~mDi~kql~eykvey~vLq~El~~~~~  850 (948)
T KOG4436|consen  782 LLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTEMEKIIKQVFEMDISKQLAEYKVEYHVLQEELTTSSH  850 (948)
T ss_pred             HHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999986 699999999996 4432 46778999999999999999999999998877665544

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=100.00  E-value=6.8e-35  Score=280.20  Aligned_cols=270  Identities=43%  Similarity=0.684  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhh-cCcchHHHHhhhccCCChhHH
Q 040788           49 EERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLL-MNPGVYEQLLIYETSTSELDI  127 (365)
Q Consensus        49 e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~-~~~~~y~~l~~~~~~~~~~~I  127 (365)
                      ...+.+.|..+..    .|-.+..+++.++..++..|||..+|+.+|..+++...... .................+..|
T Consensus       113 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  188 (397)
T KOG1102|consen  113 LLEGEQELTALSS----SWLKVILRRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRLQLDEPEPHESEI  188 (397)
T ss_pred             hhhhHHHHHHHHH----HhhhhccccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHHhhccCCCchhHH
Confidence            3445556666654    56666667889999999999999999999999998621111 111122222222233333333


Q ss_pred             hhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccc
Q 040788          128 IRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGL  207 (365)
Q Consensus       128 ~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~  207 (365)
                      .+|+.||||.+..|..+.+.++++|.+|+.+|+.++|++||||||..+|++++.+++|++|||+++.+|...   + .+.
T Consensus       189 ~~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~ee~af~~lv~l~~~~---~-~~~  264 (397)
T KOG1102|consen  189 IRDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLPEEEAFPLLVKLMKNY---G-LDL  264 (397)
T ss_pred             HhhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCchhhhhhhhhhhhhcc---c-hhc
Confidence            399999999999999988999999999999999999999999999999999999999999999999999983   3 445


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHH
Q 040788          208 YQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLAL  287 (365)
Q Consensus       208 ~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lai  287 (365)
                      |..++++++.....++.+++...|.++.|+...++...+|+.+|++|+|+..+|++.++|+||.++.+|..+++.+++++
T Consensus       265 ~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l  344 (397)
T KOG1102|consen  265 LSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLAL  344 (397)
T ss_pred             ccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHhhCCCHHHHHHHHhCCCCCCCChhHHHHHHhc
Q 040788          288 LTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYS  326 (365)
Q Consensus       288 l~~~~~~Ll~~~~~~i~~~l~~~~~~~~d~~~li~~a~~  326 (365)
                      ++...+.+++.+++.+++++.+.+....+....-..++.
T Consensus       345 ~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~  383 (397)
T KOG1102|consen  345 LKHKADDLLDLDFESLLSYLRVDLPKSYDSELSDKYLLE  383 (397)
T ss_pred             hhhhhHHHhhccHHHHHHHHhcccHhhcCccchhHHHHH
Confidence            999999999999999999999975544444444444433

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-35  Score=250.12  Aligned_cols=220  Identities=32%  Similarity=0.617  Sum_probs=196.3

Q ss_pred             CCcCCCccCCCCCCchhhhhhhchHHHHHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHh
Q 040788           20 VDRFGFVKQEHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLIS   99 (365)
Q Consensus        20 ~d~yGf~~~~~~~~~~~~~~~~~~~~~~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll   99 (365)
                      .|++||+.......-.   +...  ....-+.|.+||..|++    +|..+.+++.++++-+|++|||+++|++.|+.|+
T Consensus        47 pdr~gfi~~~q~a~~~---k~~~--~~~~L~~ReskwL~mld----nw~~~m~kk~~~ir~rcrkgippslr~Raw~yls  117 (267)
T KOG2221|consen   47 PDRFGFIEGEQGAQGK---KEPE--TRGELRYRESKWLHMLD----NWHEEMRKKQKKIRPRCRKGIPPSLRGRAWRYLS  117 (267)
T ss_pred             CcccceeecccccccC---CCcc--cHHHHHhhHHHHHHHHH----HHHHHHHhccccccchhhcCCCcccchhHHHhhc
Confidence            4999998866443221   1111  23345678999999998    8999999999999999999999999999999999


Q ss_pred             CCHhHhhcCcchHHHHhhhccCCC-hhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHH
Q 040788          100 GSRDLLLMNPGVYEQLLIYETSTS-ELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGL  178 (365)
Q Consensus       100 ~~~~~~~~~~~~y~~l~~~~~~~~-~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~  178 (365)
                      |+......||..|..+......+. ...|.+|++|-||.|.+|......+++.|+|+|.||..++|+.||||+-..||++
T Consensus       118 Ga~~~~~~np~~~~~~~~~pG~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~  197 (267)
T KOG2221|consen  118 GAPSPPPKNPVVFDELGPAPGDPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAV  197 (267)
T ss_pred             CCCCCCCCCcchhhhccCCCCCCcchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHH
Confidence            998888889999999886654443 4579999999999999999888889999999999999999999999999999999


Q ss_pred             HHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHH
Q 040788          179 LLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWF  252 (365)
Q Consensus       179 ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~  252 (365)
                      +|+++++++|||||+.+.+.    ++.++|+.++..++.+-.++..|+++.+|..|.|+...++++.+|.+.||
T Consensus       198 llmhmp~rdaf~~~vqicek----ylqgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF  267 (267)
T KOG2221|consen  198 LLMHMPARDAFWCFVQICEK----YLQGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF  267 (267)
T ss_pred             HHhcccHHHHHHHHHHHHHH----HcccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence            99999999999999999998    47999999999999999999999999999999999999999999999997

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=261.08  Aligned_cols=242  Identities=24%  Similarity=0.431  Sum_probs=214.1

Q ss_pred             hHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhhhhcCCCccccccCCCcchHHHHH
Q 040788           75 PHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYN  154 (365)
Q Consensus        75 ~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~  154 (365)
                      ...+-+..+.|||+-+|+.+|..|++....   ....|..+-.......+.||+.|++|+.......+.+  .+++.|+|
T Consensus       345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~---~~a~y~~IDk~Ts~~tdrqievdiprchQyd~~lsSp--~~~r~lrR  419 (725)
T KOG1093|consen  345 RLQILREAYVDVPPLYRGFIWAALLQLEEN---HTAFYTLIDKGTSHSTDRQIEVDIPRCHQYDELLSSP--KGHRKLRR  419 (725)
T ss_pred             HHHHHHHhccCCChhHhHHHHHHHhcCccc---cchhhhhhhcCCCCcchhhhhcccchhhhcccccCCH--HHHHHHHH
Confidence            344555667899999999999999987532   2345766655555677899999999999988877765  78999999


Q ss_pred             HHHHHHHhcCCCCcccchhHHHHHHHHh-c-ChhhHHHHHHHHHhcccCCCCccccCC-CcHHHHHHHHHHHHHHHHhch
Q 040788          155 VLKAYSVYDRDVGYVQGMGFLAGLLLLY-M-SEEDAFWLMVALLKGAVHAPMEGLYQV-GLPLVQQYLFQFDHLVKEHLP  231 (365)
Q Consensus       155 IL~a~~~~~p~igY~QGm~~ia~~ll~~-~-~E~~aF~~l~~l~~~~~~~~l~~~~~~-~~~~l~~~~~~~~~ll~~~~P  231 (365)
                      +|.|++..+|...|.||+..+|++|+.. + +|.-||.|+..++-+++    ..+|.. +..-+++++.+|.+++..++|
T Consensus       420 vLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc----q~fflkdns~vikeyLs~f~~l~AfhDp  495 (725)
T KOG1093|consen  420 VLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC----QHFFLKDNSNVIKEYLSMFSQLLAFHDP  495 (725)
T ss_pred             HHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH----HHHHhhcCchhHHHHHHHHHHHHHhcCH
Confidence            9999999999999999999999999764 3 78889999999999854    556665 556688999999999999999


Q ss_pred             hhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCC
Q 040788          232 KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFP  311 (365)
Q Consensus       232 ~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~  311 (365)
                      +|++||...|+.+.+|+++||+|+|++.||.+.++.+||-++..++.|.+.+++|++...++.||.+++.|++.++.+.|
T Consensus       496 eL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~lR~~LLa~nfne~illf~d~p  575 (725)
T KOG1093|consen  496 ELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQLRDPLLACNFNECILLFSDLP  575 (725)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhhhhhhCCchhheeeeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHhcC
Q 040788          312 EDAMDPDKLLPVAYSI  327 (365)
Q Consensus       312 ~~~~d~~~li~~a~~l  327 (365)
                        .+|.|..+...+++
T Consensus       576 --dldId~~Ires~~l  589 (725)
T KOG1093|consen  576 --DLDIDVCIRESYHL  589 (725)
T ss_pred             --cccHHHHHHHHhhh
Confidence              36999999998875

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=214.39  Aligned_cols=250  Identities=24%  Similarity=0.444  Sum_probs=182.3

Q ss_pred             HHHHHHh-cCCCcchHHHHHHHHhCCHh----------HhhcCcchHHHHhhhcc---CCC---------hhHHhhhhhh
Q 040788           77 VVKRRIR-KGIPDCLRGLVWQLISGSRD----------LLLMNPGVYEQLLIYET---STS---------ELDIIRDISR  133 (365)
Q Consensus        77 klk~~~~-~GIP~~~R~~vW~~ll~~~~----------~~~~~~~~y~~l~~~~~---~~~---------~~~I~~Dv~R  133 (365)
                      +|++.+. .||..++|+.||+.|+....          .+......|+.+..+..   ++.         ...+++||-|
T Consensus       426 ~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tvdkdvvr  505 (781)
T KOG2224|consen  426 KLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTVDKDVVR  505 (781)
T ss_pred             HhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEEecceee
Confidence            5667765 79999999999999997421          22333345666543221   111         1236799999


Q ss_pred             cCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHH-hcChhhHHHHHHHHHhcccCC----------
Q 040788          134 TFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLL-YMSEEDAFWLMVALLKGAVHA----------  202 (365)
Q Consensus       134 t~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~-~~~E~~aF~~l~~l~~~~~~~----------  202 (365)
                      |.+++++|...++++.+++++||..||.|||.+||.|||+.+.|+.|. +-+|.++||||+.+|......          
T Consensus       506 tdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapilaevld  585 (781)
T KOG2224|consen  506 TDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPILAEVLD  585 (781)
T ss_pred             ccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHHHhhhc
Confidence            999999999999999999999999999999999999877766665543 345555555555555431000          


Q ss_pred             ----------CCc-ccc--CCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc--hhchHHHHHHhccccCChHHHHH
Q 040788          203 ----------PME-GLY--QVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP--SMYASQWFITVFSYSFPFHLALR  267 (365)
Q Consensus       203 ----------~l~-~~~--~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~--~~~~~~W~ltlF~~~lp~~~~lr  267 (365)
                                -|. .+|  ++....+...+..+..|++..+|..|+||..+|-+.  .+|+.+|++.+|.++||-..++|
T Consensus       586 esdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~ea~air  665 (781)
T KOG2224|consen  586 ESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPEAEAIR  665 (781)
T ss_pred             cccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccHHHHHH
Confidence                      000 122  233334555566689999999999999999987443  46999999999999999999999


Q ss_pred             HHHHHHhc--ChHHHHHHHHHHHHHhHHHhhC--CCHHHHHHHHhCCCCCCCChhHHHHHHhcC
Q 040788          268 IWDVFLFE--GVKIVFKVGLALLTYCHDDLIK--LPFEKLIHALRNFPEDAMDPDKLLPVAYSI  327 (365)
Q Consensus       268 iwD~~l~~--g~~~l~~~~lail~~~~~~Ll~--~~~~~i~~~l~~~~~~~~d~~~li~~a~~l  327 (365)
                      ||..-++.  -..|.+++|+||+.++.++.+.  +-.++++--+.|+.-. +|-+.++.+|..+
T Consensus       666 iweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~-mdgelilrkar~l  728 (781)
T KOG2224|consen  666 IWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMH-MDGELILRKARGL  728 (781)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhh-cCchhhHHHHHHH
Confidence            99987764  4678889999999999988886  4566777777776543 5777777777543

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.8e-25  Score=210.67  Aligned_cols=201  Identities=30%  Similarity=0.474  Sum_probs=166.1

Q ss_pred             hHHhhhhhhcCCCc-cccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc--C-----------------
Q 040788          125 LDIIRDISRTFPSH-VFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM--S-----------------  184 (365)
Q Consensus       125 ~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~--~-----------------  184 (365)
                      ..|+.|+.||||.+ .+|+..  ..+..|++||..||..||.+||-|||+.+.|++++++  +                 
T Consensus       106 ~~i~qDvsRtfPe~~~fFqs~--~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f  183 (625)
T KOG1091|consen  106 KTIDQDVSRTFPEHSLFFQSP--EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGF  183 (625)
T ss_pred             HhhcchhhccCcchhhhhcCc--hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCc
Confidence            45889999999999 777764  5788999999999999999999999999999988764  1                 


Q ss_pred             -hh-----------hHH--HHHHHHHhcc-------------------cCCCCccccCCCcHHHHHHHHHHHHHHHHhch
Q 040788          185 -EE-----------DAF--WLMVALLKGA-------------------VHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLP  231 (365)
Q Consensus       185 -E~-----------~aF--~~l~~l~~~~-------------------~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P  231 (365)
                       |.           +++  -+++.+|...                   ..+.+.+.+.++.+.+......+..++.+.++
T Consensus       184 ~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~  263 (625)
T KOG1091|consen  184 EERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDK  263 (625)
T ss_pred             chhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccH
Confidence             11           222  2344444321                   11223333445567777888889999999999


Q ss_pred             hhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHH-HHHhcChHHH--HHHHHHHHHHhHHHhhCCCHHHHHHHHh
Q 040788          232 KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWD-VFLFEGVKIV--FKVGLALLTYCHDDLIKLPFEKLIHALR  308 (365)
Q Consensus       232 ~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD-~~l~~g~~~l--~~~~lail~~~~~~Ll~~~~~~i~~~l~  308 (365)
                      .+|.||.+.||.|.+|..+|+..||.++||+..++.+|| +.+++++...  -++++|+|..+++.|+..+...+++.|.
T Consensus       264 ~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm  343 (625)
T KOG1091|consen  264 SLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQTCLQYLM  343 (625)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHh
Confidence            999999999999999999999999999999999999999 8888887654  4889999999999999998888999999


Q ss_pred             CCCCCCCChhHHHHHHhcCc
Q 040788          309 NFPEDAMDPDKLLPVAYSIK  328 (365)
Q Consensus       309 ~~~~~~~d~~~li~~a~~l~  328 (365)
                      ++|.. .|.+.+++.|..++
T Consensus       344 ~yP~~-~Dv~~~iekAl~l~  362 (625)
T KOG1091|consen  344 NYPEI-IDVDKFIEKALHLQ  362 (625)
T ss_pred             cCCCc-CcHHHHHHHHHHHH
Confidence            99986 79999999997765

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.4e-24  Score=195.53  Aligned_cols=231  Identities=19%  Similarity=0.239  Sum_probs=190.5

Q ss_pred             CcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhhhhcCCCccccccC--CCcchHHHHHHHHHHHHhcC
Q 040788           87 PDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQR--HGPGQRSLYNVLKAYSVYDR  164 (365)
Q Consensus        87 P~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~--~~~~~~~L~~IL~a~~~~~p  164 (365)
                      -+++|+.||..|+|..-..   .+.-..+......+...|+..|+.|+|...+.-...  ....++.|..++......+|
T Consensus        63 ~dslRk~vWp~L~~~~~n~---~~~~~~~~~~q~hkd~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP  139 (395)
T KOG2595|consen   63 NDSLRKDVWPELLALNINH---LDATSTLTPVQKHKDYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYP  139 (395)
T ss_pred             cHHHHHHHHHHHhccccCC---CcccccCChhhhCcccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6689999999999965322   111122222344566789999999998765531110  11345677777777778899


Q ss_pred             CCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Q 040788          165 DVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP  244 (365)
Q Consensus       165 ~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~  244 (365)
                      ++.|.||.++||..||++++|.+|+-++..+-..    ++++|+.+.+.+....+..+..+++..+|++|+.|.+..+.+
T Consensus       140 ~L~YYQGyHDI~~tfLLv~gE~~Al~l~E~L~~~----~lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt  215 (395)
T KOG2595|consen  140 TLNYYQGYHDIVVTFLLVVGELEALSLMEELSTL----HLRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT  215 (395)
T ss_pred             CcchhcchhHHHHHHHHhhhhHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc
Confidence            9999999999999999999999999888888755    589999999999999999999999999999999999988887


Q ss_pred             hhchHHHHHHhccccCC-hHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC--CHHHHHHHHhCCCCCCCChhHHH
Q 040788          245 SMYASQWFITVFSYSFP-FHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL--PFEKLIHALRNFPEDAMDPDKLL  321 (365)
Q Consensus       245 ~~~~~~W~ltlF~~~lp-~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~--~~~~i~~~l~~~~~~~~d~~~li  321 (365)
                       +|+.+|++|||+|.+. +..++|++|+|++..+-..++++.+++...+.+|+++  ++.-+-..|..+|.. ...|.++
T Consensus       216 -lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~-lp~d~li  293 (395)
T KOG2595|consen  216 -LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQD-LPYDTLI  293 (395)
T ss_pred             -eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccc-cCHHHHH
Confidence             6999999999999996 8999999999999998888999999999999999996  556677778888886 7899999


Q ss_pred             HHHhc
Q 040788          322 PVAYS  326 (365)
Q Consensus       322 ~~a~~  326 (365)
                      +.+..
T Consensus       294 k~s~~  298 (395)
T KOG2595|consen  294 KESVL  298 (395)
T ss_pred             HHHHH
Confidence            98744

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=99.89  E-value=5.6e-23  Score=202.18  Aligned_cols=329  Identities=29%  Similarity=0.437  Sum_probs=253.4

Q ss_pred             CCCCCCCcCCCccCCCCCCc--hhhhh-hhchHHHHHHHHHHHHHHHHhhcc--------CCCcchhcccChHHHHHHHh
Q 040788           15 PSPRPVDRFGFVKQEHGSPH--EGVIK-SRSAIQFEREERRVRKWRKMIGVG--------GSDWKHYVRRKPHVVKRRIR   83 (365)
Q Consensus        15 ~~~~~~d~yGf~~~~~~~~~--~~~~~-~~~~~~~~~e~~r~~kW~~~l~~~--------~~~~~~~~~~~~~klk~~~~   83 (365)
                      .+....|.+||.-.....+-  +..+. .........++.-.--|..+....        ...|+........+++.+|.
T Consensus       103 q~~~~~~~~g~~sr~~sg~s~~~~v~~v~~~~n~s~~DE~m~Tl~~a~s~~~~~~~~~~~~~~~E~~r~~s~~~l~e~Ve  182 (948)
T KOG4436|consen  103 QSISHVSHFGFISRESSGNSQLEAVCYVFQCQNESLVDEDMWTLWGAFSAAASQQHAKYAMDLWERCRKKSLHKLKELVE  182 (948)
T ss_pred             hhhhhhhhcCcccccCCCCCcccceeeeeccCCCcchhhhHHHHHHHHhhhhhhhcccccchhhhhhhhhchhhhHHHHh
Confidence            34556899999664433221  11111 001112233444445666665421        12576655667789999999


Q ss_pred             cCCCcchHHHHHHHHhCCHhHhhc-CcchHHHHhhhccCCChh-----HHhhhhhhcCCCccccccCCCc-------chH
Q 040788           84 KGIPDCLRGLVWQLISGSRDLLLM-NPGVYEQLLIYETSTSEL-----DIIRDISRTFPSHVFFQQRHGP-------GQR  150 (365)
Q Consensus        84 ~GIP~~~R~~vW~~ll~~~~~~~~-~~~~y~~l~~~~~~~~~~-----~I~~Dv~Rt~~~~~~f~~~~~~-------~~~  150 (365)
                      +|||+..|..+|..|+...+.... --+.|..+.... +..+.     -|..|+.||.|.|.+|......       +++
T Consensus       183 ~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s-~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d  261 (948)
T KOG4436|consen  183 GGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCS-SQQEKELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQD  261 (948)
T ss_pred             cCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhc-chhhhhHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHH
Confidence            999999999999999976432210 123455554322 22222     5789999999999999986554       689


Q ss_pred             HHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhc
Q 040788          151 SLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHL  230 (365)
Q Consensus       151 ~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~  230 (365)
                      .|+++..+|+...-++|||||-++++|++++.++++.+|..++.+|..   +.++..+.+.+..+...++.++...+...
T Consensus       262 ~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~~E~assv~~~lm~~---~rl~~l~kpe~~~l~~~~~q~e~~~q~~s  338 (948)
T KOG4436|consen  262 QLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMPVEEASSVKVQLMIL---YRLRELSKPEMEPLGLCMFQLECTNQDQS  338 (948)
T ss_pred             HHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCcHHHHHHHHHHHHHh---hcccccCCcccchhHHHHHhhcccccccc
Confidence            999999999999999999999999999999999999999999999998   45788999999889888889999999999


Q ss_pred             h-hhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHH-HHhHHHhhCCCHHHHHHHHh
Q 040788          231 P-KLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALL-TYCHDDLIKLPFEKLIHALR  308 (365)
Q Consensus       231 P-~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail-~~~~~~Ll~~~~~~i~~~l~  308 (365)
                      | .++.|+.+.+++.++|...||++.|...+|+...-|+.|+|.++|....|++.+|++ ....-++...|+++....++
T Consensus       339 p~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d~~~~s~D~EG~~~~~q  418 (948)
T KOG4436|consen  339 PMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRDIELESLDMEGMLSYFQ  418 (948)
T ss_pred             hhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhhhhhhccCccccccchh
Confidence            9 999999999999999999999999999999999999999999999999999999999 44555677789998877776


Q ss_pred             C-CCCC-CCChhHHHHHHhcCccc-hHHHHHHHHHHHHhhhh
Q 040788          309 N-FPED-AMDPDKLLPVAYSIKVS-KRLEELKSLYEKQNKKV  347 (365)
Q Consensus       309 ~-~~~~-~~d~~~li~~a~~l~~~-~~l~~l~~~~~~~~~~~  347 (365)
                      . .+.. .-+++.+...|+...+. +....+++.|..+..+.
T Consensus       419 r~~s~~vggtp~k~~t~a~q~q~~lkv~~~l~ks~s~~rtke  460 (948)
T KOG4436|consen  419 RNRSNTVGGTPDKLRTAAWQVQINLKVMKPLEKSPSAMRTKE  460 (948)
T ss_pred             hccccccCCCCchHHHHHHHHhHhHHHhhhccCChHHHHHhh
Confidence            4 3322 25788999999888876 55677777776655443

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=99.86  E-value=6.5e-22  Score=193.93  Aligned_cols=235  Identities=26%  Similarity=0.418  Sum_probs=187.7

Q ss_pred             cCCCcchHHHHHHHHhCCHhHhhcCc---------chHHHHhhhccC-------------CChhHHhhhhhhcCCCcccc
Q 040788           84 KGIPDCLRGLVWQLISGSRDLLLMNP---------GVYEQLLIYETS-------------TSELDIIRDISRTFPSHVFF  141 (365)
Q Consensus        84 ~GIP~~~R~~vW~~ll~~~~~~~~~~---------~~y~~l~~~~~~-------------~~~~~I~~Dv~Rt~~~~~~f  141 (365)
                      .|+-+.+|+.+|+.+.+.........         ..|.........             .....|.+|+.||.+.+.++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~  255 (488)
T KOG2197|consen  176 GGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDEYFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLEFY  255 (488)
T ss_pred             cccccchhhhhhhhhhcccCcccccccccccccccccHhhhhhhheeccccccccccchhhhhhhhhhhccccchhhhhh
Confidence            45666999999999987432211111         124433322111             11245899999999999999


Q ss_pred             ccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHH
Q 040788          142 QQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLF  220 (365)
Q Consensus       142 ~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~  220 (365)
                      ..+.++....|..||.+|+.+++++||||||+++.++++.++ +|.+|||||+.+|+.     +...|..+..+++..+.
T Consensus       256 ~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~-----~~~nF~~d~~~~~~Ql~  330 (488)
T KOG2197|consen  256 EGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDR-----LRHNFRIDQSGMQTQLA  330 (488)
T ss_pred             hcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHH-----HhhcCccccccHHHHhh
Confidence            876545689999999999999999999999999999998876 678899999999998     56678888889999999


Q ss_pred             HHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHhhCC
Q 040788          221 QFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFE--GVKIVFKVGLALLTYCHDDLIKL  298 (365)
Q Consensus       221 ~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~--g~~~l~~~~lail~~~~~~Ll~~  298 (365)
                      .+..+++..+|.++.||+..+.....++++|++.+|-++|.++.++++|.++...  ...+.++++.|++....+.|+..
T Consensus       331 ~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~~~~~l~~~  410 (488)
T KOG2197|consen  331 QLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNKDPQTLMEQ  410 (488)
T ss_pred             hhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhcchHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999875  56788999999999988888863


Q ss_pred             --CHHHHHHHHhCCCCCCCChhHHHHHH
Q 040788          299 --PFEKLIHALRNFPEDAMDPDKLLPVA  324 (365)
Q Consensus       299 --~~~~i~~~l~~~~~~~~d~~~li~~a  324 (365)
                        ++.+++..+...... .|...++..|
T Consensus       411 ~~~~~e~l~~i~~~~~~-~d~~~~~~~A  437 (488)
T KOG2197|consen  411 GKSFNEVLKHVNLLSEK-ADVLWVLVRA  437 (488)
T ss_pred             CccchhHHhhccccccc-chhhhHHHHH
Confidence              556666656555433 4555555554

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=99.72  E-value=4.8e-17  Score=151.48  Aligned_cols=242  Identities=20%  Similarity=0.369  Sum_probs=175.7

Q ss_pred             CCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcC
Q 040788           85 GIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDR  164 (365)
Q Consensus        85 GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p  164 (365)
                      |=|...    |+.++|+... ...-..+..+.   ..+...+|.+|..|--.....-.+..-+....|..++.-|+. +.
T Consensus        36 G~~~~~----W~~~L~V~~K-~d~l~~wd~iy---dLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK-~R  106 (669)
T KOG3636|consen   36 GNDKSD----WMRLLGVSMK-PNPLDDWDQIY---DLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCK-KR  106 (669)
T ss_pred             CCCHHH----HHHHhcccCC-CCchhhHHHHh---CCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhh-cc
Confidence            555554    9999998632 11223455543   234445678887665433322221112334468888877765 55


Q ss_pred             CCCcccchhHH---HHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhcc
Q 040788          165 DVGYVQGMGFL---AGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEM  241 (365)
Q Consensus       165 ~igY~QGm~~i---a~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~  241 (365)
                      ++.|....+.|   -.++++.+|..+.|-+|.+++..+.+.   +.-..+     ..+..|.-||+.++|+|..||....
T Consensus       107 n~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPk---dcrpkg-----~~Fh~FRLLlqYHdPelc~~Ldtkk  178 (669)
T KOG3636|consen  107 NMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPK---DCRPKG-----QIFHLFRLLLQYHDPELCNHLDTKK  178 (669)
T ss_pred             CCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCC---CCCCCC-----ccchHHHHHHHhcCHHHhhhhhccc
Confidence            67787766633   445566789999999999999996542   222222     2356788999999999999999999


Q ss_pred             CCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHH-HHHHHHHHHHHhHHHhhCC---CHHHHHHHHhCCCCCC--C
Q 040788          242 INPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKI-VFKVGLALLTYCHDDLIKL---PFEKLIHALRNFPEDA--M  315 (365)
Q Consensus       242 i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~-l~~~~lail~~~~~~Ll~~---~~~~i~~~l~~~~~~~--~  315 (365)
                      +.|++|+..||-+||+.+.+.+.+.-+||.|+-.+.+| +|++++.||..-+++||+.   +.|+++++|.++|...  .
T Consensus       179 itPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~e  258 (669)
T KOG3636|consen  179 ITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVE  258 (669)
T ss_pred             cCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccc
Confidence            99999999999999999999999999999999998777 5688889999999999984   5789999999998743  5


Q ss_pred             ChhHHHHHHhcCccchHHHHHHHHHHHHh
Q 040788          316 DPDKLLPVAYSIKVSKRLEELKSLYEKQN  344 (365)
Q Consensus       316 d~~~li~~a~~l~~~~~l~~l~~~~~~~~  344 (365)
                      |+..++..|.-.. .+..+.+++.|....
T Consensus       259 DvpDffsLAqyY~-~KTP~sfrkD~~~~l  286 (669)
T KOG3636|consen  259 DVPDFFSLAQYYS-DKTPESFRKDFHYIL  286 (669)
T ss_pred             cchhHHHHHHHHh-hcChHHhhhhhhHhh
Confidence            7888888874333 345567777765543

>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=8.6e-14  Score=124.04  Aligned_cols=247  Identities=21%  Similarity=0.337  Sum_probs=174.7

Q ss_pred             HHHHHHHhcCC---CcchHHHHHHHHhCCHhHhhcC--cchHHHHhhhc--cCC-ChhHHhhhhhhcC-CCccccccCCC
Q 040788           76 HVVKRRIRKGI---PDCLRGLVWQLISGSRDLLLMN--PGVYEQLLIYE--TST-SELDIIRDISRTF-PSHVFFQQRHG  146 (365)
Q Consensus        76 ~klk~~~~~GI---P~~~R~~vW~~ll~~~~~~~~~--~~~y~~l~~~~--~~~-~~~~I~~Dv~Rt~-~~~~~f~~~~~  146 (365)
                      ..+|++.|.|-   .+.+|++|+..|..----....  ...|..+.-.-  ... +-.-+..-+..|- |+. ..   +.
T Consensus        33 qelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqvpsy-cl---na  108 (559)
T KOG2801|consen   33 QELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQVPSY-CL---NA  108 (559)
T ss_pred             HHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcCchh-hh---cC
Confidence            34677777665   4567888888776421111111  23466554221  111 0000111111121 111 11   22


Q ss_pred             cchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHh-cChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHH
Q 040788          147 PGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLY-MSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHL  225 (365)
Q Consensus       147 ~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~-~~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l  225 (365)
                      .|...++.||.+.+...|+|++|+.+.-+++++|.| .+|.++|--.+.++...-  +=+.+...++-.+...+-.|..+
T Consensus       109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacnd--pgrrlidqsflafesscmtfgdl  186 (559)
T KOG2801|consen  109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACND--PGRRLIDQSFLAFESSCMTFGDL  186 (559)
T ss_pred             cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecC--cchhhhhhHHHHHHhhhhhHHHH
Confidence            456679999999999999999999999999999988 489999998888876532  22445555666677778889999


Q ss_pred             HHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCC----C--
Q 040788          226 VKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL----P--  299 (365)
Q Consensus       226 l~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~----~--  299 (365)
                      +.+++...++.+....-+.......|-..+|. ++|+-...|++|+|+.+|.++++++++||++...+.--..    +  
T Consensus       187 vnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegykvlyrvalailkffhkvragqplesdsv  265 (559)
T KOG2801|consen  187 VNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQPLESDSV  265 (559)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHhhcCCCCccchH
Confidence            99999998888876655555667788888886 8999999999999999999999999999999988754432    2  


Q ss_pred             HHHHHHHHhCCCCCCCChhHHHHHHhcCccc
Q 040788          300 FEKLIHALRNFPEDAMDPDKLLPVAYSIKVS  330 (365)
Q Consensus       300 ~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~  330 (365)
                      ..+|-.+.+++.+. ++++.++++||.+++.
T Consensus       266 kqdirtfvrdiakt-vspekllekafairlf  295 (559)
T KOG2801|consen  266 KQDIRTFVRDIAKT-VSPEKLLEKAFAIRLF  295 (559)
T ss_pred             HHHHHHHHHHHHhh-CCHHHHHHHHHHHHHh
Confidence            24677888888776 7999999999999985

>PF14961 BROMI: Broad-minded protein

Probab=97.72  E-value=0.0011  Score=70.36  Aligned_cols=126  Identities=14%  Similarity=0.196  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHh
Q 040788          216 QQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDL  295 (365)
Q Consensus       216 ~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~~~~L  295 (365)
                      ...+..++.+|+...|.++.-|.-.|..|...+.+|+..+|=+.+++..+....=.-+..|..+-+++++|+|+..+++|
T Consensus      1164 ~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~i 1243 (1296)
T PF14961_consen 1164 FCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEI 1243 (1296)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHH
Confidence            34567789999999999999999999999999999999999999999988888888888999999999999999999999


Q ss_pred             hCCC-HHHHHHHHhCCCCCCCChhHHHHHHhcCccchHHHHHHHHHHHHhhhhhhh
Q 040788          296 IKLP-FEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQS  350 (365)
Q Consensus       296 l~~~-~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~~~~~  350 (365)
                      |+.. ..++..+|+.-+-..+.+..-+         +-++.|+..|+...-+..+.
T Consensus      1244 lq~~q~q~L~~flke~~l~gF~~~~~~---------~yM~~Le~~yR~~vL~~m~~ 1290 (1296)
T PF14961_consen 1244 LQHTQTQDLQVFLKEEALRGFRVSDYL---------EYMENLEQRYRPRVLTDMRN 1290 (1296)
T ss_pred             HHhhhhchHHHHhhhccccceeHHhHH---------HHHHHHHHHhHhHHHHHHHH
Confidence            9854 3446666655443322222211         34677888887766555443

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]

Probab=97.56  E-value=2.6e-06  Score=81.43  Aligned_cols=230  Identities=21%  Similarity=0.318  Sum_probs=140.4

Q ss_pred             HHHHHHhcCCCcchHHHHHHHHhCCHh------HhhcC----cchHHHHhhhccCCChhHHhhhhhhcCCCccccccCCC
Q 040788           77 VVKRRIRKGIPDCLRGLVWQLISGSRD------LLLMN----PGVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHG  146 (365)
Q Consensus        77 klk~~~~~GIP~~~R~~vW~~ll~~~~------~~~~~----~~~y~~l~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~  146 (365)
                      .+..-++.|+-...|+.+|+...+...      ....+    ...|++.+.......-..|++|+.|...+..+|.+.  
T Consensus       550 ~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~~~~~~~~~kd~e~~~~~~~~fs~~--  627 (813)
T KOG1648|consen  550 VLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLFRANLHRIDKDVERCDRNLMFFSNK--  627 (813)
T ss_pred             HHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHHhhheeeecchhhhCcchheeecCC--
Confidence            456667889999999999999887421      11111    123655443333333456889999999999999875  


Q ss_pred             cchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcC-hhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHH
Q 040788          147 PGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS-EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHL  225 (365)
Q Consensus       147 ~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~-E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~l  225 (365)
                      .+.++ +++...|...+-+-||.|||.++.++++.-+. |.-+--|+.-+|-.-     ++.|. ..++....+-.+ ++
T Consensus       628 ~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q-----~~~~~-q~~~~~~~l~~~-r~  699 (813)
T KOG1648|consen  628 DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ-----RGKFP-QRPGMSKCLLNL-RL  699 (813)
T ss_pred             cchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh-----cccCC-CCCCcccccccc-cc
Confidence            44555 78888888888899999999999999887652 222222332233221     11121 122222222111 24


Q ss_pred             HHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHhHHHhhC--C
Q 040788          226 VKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEG-----VKIVFKVGLALLTYCHDDLIK--L  298 (365)
Q Consensus       226 l~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g-----~~~l~~~~lail~~~~~~Ll~--~  298 (365)
                      ++..+|-... +..    .....++||+.-|.+.++-+....+|..+....     ..+-++++++. ....+.++.  .
T Consensus       700 ~~v~~~l~s~-id~----~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~-~~~~~~~~t~~~  773 (813)
T KOG1648|consen  700 IQVVDPLISD-IDY----AQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAIFFGLAT-TNYHDVLITNNF  773 (813)
T ss_pred             hhhhcchhcc-hhh----hhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhhhhhhHH-HhhHHHHhhccc
Confidence            4444552211 111    123458999999999999998888888887653     34566777777 444455554  3


Q ss_pred             CHHHHHHHHhCCCCCCCChhHHHHH
Q 040788          299 PFEKLIHALRNFPEDAMDPDKLLPV  323 (365)
Q Consensus       299 ~~~~i~~~l~~~~~~~~d~~~li~~  323 (365)
                      +..+.+++++.... ..+.+.++..
T Consensus       774 ~~t~~i~~~~~~~e-~~~c~r~~~~  797 (813)
T KOG1648|consen  774 DYTDMIKFFNEMAE-RHDCSRLLSS  797 (813)
T ss_pred             chHHHHHHHHHHHh-hhhhHHHHhc
Confidence            55567777766533 2567766543

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=89.22  E-value=0.047  Score=53.21  Aligned_cols=135  Identities=20%  Similarity=0.247  Sum_probs=94.0

Q ss_pred             HhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCcc
Q 040788          127 IIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEG  206 (365)
Q Consensus       127 I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~  206 (365)
                      |..|+..|+.    +..+.+..++.    |.+|..+++++|||  +..+.+                    .     ..+
T Consensus         3 ~~~~~~~~~~----~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~--------------------~-----~~~   47 (397)
T KOG1102|consen    3 IDSPVRLTFR----LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS--------------------K-----SDG   47 (397)
T ss_pred             CCcccccccc----CCCCccccccc----ccCCCccccccccc--hhhhhh--------------------c-----ccc
Confidence            4556666665    44444433333    78899999999999  555554                    1     344


Q ss_pred             ccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHH
Q 040788          207 LYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLA  286 (365)
Q Consensus       207 ~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~la  286 (365)
                      +...+...+...............+.-..|+...+ ........|....|.+......+.++||.+..+|...+....-+
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (397)
T KOG1102|consen   48 FQSSNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSS  126 (397)
T ss_pred             cccCCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHHHHHHHHH
Confidence            44444444444333334444455566667777777 77778889999999999999999999999999999999988888


Q ss_pred             HHHHhHHHhhC
Q 040788          287 LLTYCHDDLIK  297 (365)
Q Consensus       287 il~~~~~~Ll~  297 (365)
                      .++.+...+++
T Consensus       127 ~~~~~~~~~~~  137 (397)
T KOG1102|consen  127 WLKVILRRPLK  137 (397)
T ss_pred             hhhhccccHHH
Confidence            88876444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	365
3hzj_A	310	Crystal Structure Of The Rabgap Domain Of The Rabga		4e-44
3qyb_A	301	X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab		7e-36
3qye_A	331	Crystal Structure Of Human Tbc1d1 Rabgap Domain Len		1e-35
2qq8_A	334	Crystal Structure Of The Putative Rabgap Domain Of		8e-33
3dzx_A	346	Crystal Structure Of The Rabgap Domain Of Human Tbc		6e-07
2qfz_A	345	Crystal Structure Of Human Tbc1 Domain Family Membe		3e-04
2g77_A	410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-04
1fkm_A	396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		8e-04

>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310

Iteration: 1
 Score =  175 bits (444), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/255 (37%), Positives = 139/255 (54%), Gaps = 13/255 (5%)
Query: 56  WRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQ- 114
           W +++G     W   +  +P  +   ++ G+P+ LR  VWQL++G  D    N    ++ 
Sbjct: 8   WGELLG----KWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHD----NQAXLDRY 59
Query: 115 -LLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMG 173
            +LI + S  E  I RDI RTFP+H +F+   G GQ SLY + KAYSVYD D+GY QG  
Sbjct: 60  RILITKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQS 119
Query: 174 FLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKL 233
           FLA +LLL+  EE AF ++V   K      +  LY+     +    +Q + L +E LP L
Sbjct: 120 FLAAVLLLHXPEEQAFCVLV---KIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDL 176
Query: 234 GEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHD 293
             HF+   +    YASQWF+T+F+  FP      I D+ L EG+ I+F V LALL    +
Sbjct: 177 HSHFSDLNLEAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKTSKE 236
Query: 294 DLIKLPFEKLIHALR 308
           DL++  FE  +   R
Sbjct: 237 DLLQADFEGALKFFR 251

>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301

Iteration: 1
 Score =  147 bits (372), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 152/259 (58%), Gaps = 12/259 (4%)
Query: 82  IRKGIPDCLRGLVWQLISGSRDLL--LMN----PGVYEQLLIYETSTSELDIIRDISRTF 135
           +++G+P   RG +WQ ++    L   L N    P +  + L+ + +  +  I+ D+ RTF
Sbjct: 46  LKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPDISYKELLKQLTAQQHAILVDLGRTF 105
Query: 136 PSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVAL 195
           P+H +F  + GPGQ SL+N+LKAYS+ D++VGY QG+ F+AG+LLL+MSEE AF ++  L
Sbjct: 106 PTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEMLKFL 165
Query: 196 LKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITV 255
           +           Y+  +  +Q  ++Q   L+ ++   L  H  +  I+PS+YA+ WF+T+
Sbjct: 166 M---YDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTL 222
Query: 256 FSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKL-PFEKLIHALRN-FPE- 312
           F+  F      R++D+   +G +++FKV L+LL+     +++   FE ++  L+N  P+ 
Sbjct: 223 FASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVEFLKNTLPDM 282
Query: 313 DAMDPDKLLPVAYSIKVSK 331
           +  + +K++   + + +SK
Sbjct: 283 NTSEMEKIITQVFEMDISK 301

>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/240 (34%), Positives = 135/240 (56%), Gaps = 14/240 (5%)
Query: 56  WRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGV---- 111
           W KM+   G     +   K H     + +G+P   RG +W+ ++    L    P      
Sbjct: 33  WEKMLSTPGRSKIKFDMEKMHSA---VGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPK 89
Query: 112 ---YEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGY 168
              Y++LL   TS     I+ D+ RTFP+H +F  + G GQ SLYN+LKAYS+ D++VGY
Sbjct: 90  DVPYKELLKQLTSQQH-AILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGY 148
Query: 169 VQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKE 228
            QG+ F+AG+LLL+MSEE+AF ++  L+       +   Y+  + ++Q  ++Q   L+ +
Sbjct: 149 CQGLSFVAGILLLHMSEEEAFKMLKFLM---FDMGLRKQYRPDMIILQIQMYQLSRLLHD 205
Query: 229 HLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALL 288
           +   L  H  +  I PS+YA+ WF+T+F+  FP     R++D+   +G +++FKV L+LL
Sbjct: 206 YHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLL 265

>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334

Iteration: 1
 Score =  137 bits (346), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 137/284 (48%), Gaps = 36/284 (12%)
Query: 78  VKRRIR----KGIPDCLRGLVWQLISGSR--------DLLLMNPGVYEQLLIYETSTSE- 124
             R++R    +GIP  +RG VW L  G+         D+ L      E+     T  SE 
Sbjct: 37  CSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAK--ERWRSLSTGGSEV 94
Query: 125 ---------------LDIIR-DISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGY 168
                          L++I+ DISRTFP+   FQQ  GP    L+++L AY+ Y  DVGY
Sbjct: 95  ENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGY 153
Query: 169 VQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKE 228
           VQGM F+A +L+L +   DAF     LL           ++V   L+  Y   F+   +E
Sbjct: 154 VQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQM---AFFRVDHGLMLTYFAAFEVFFEE 210
Query: 229 HLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALL 288
           +LPKL  HF K  + P +Y   W  T++S S P  LA RIWDVF  +G + +F+  L +L
Sbjct: 211 NLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGIL 270
Query: 289 TYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKR 332
               D L K+ F  +   L   PED +  ++L     +I++  R
Sbjct: 271 KLFEDILTKMDFIHMAQFLTRLPED-LPAEELFASIATIQMQSR 313

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 111/292 (38%), Gaps = 56/292 (19%)
Query: 85  GIPDCLRGLVWQLISG-------SRDLLLMNP-----GVYEQLLIYETSTSELDIIR--- 129
           G+P  +R + W+L+SG        R L L        G  EQ           D  R   
Sbjct: 51  GVPREVRPITWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSRNEEHHQDTYRQIH 110
Query: 130 -DISRTFPSHVFFQQRHGPGQRSLYN-VLKAYSVYDRDVGYVQGMG-----FLAGLLLLY 182
            DI RT P    FQQ   P  + ++  +L  +++     GYVQG+      F    L  Y
Sbjct: 111 IDIPRTNPLIPLFQQ---PLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFLSEY 167
Query: 183 MSEE-------------------DAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFD 223
           + E+                   D+FW M  LL G     ++  Y    P +Q+ +   +
Sbjct: 168 VEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDG-----IQDNYTFAQPGIQKKVKALE 222
Query: 224 HLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKI---- 279
            LV     ++  HF +  +    +A +W   +     P    +R+WD +  E        
Sbjct: 223 ELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFH 282
Query: 280 VFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDK---LLPVAYSIK 328
           ++     L+ +  + L +  F+ L+  L+N P      ++   LL  AY +K
Sbjct: 283 LYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIGLLLAEAYRLK 334

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 111/302 (36%), Gaps = 58/302 (19%)
Query: 78  VKRRIRKGIPDCLRGLVWQLISG------SRDLLLMNPGVYEQLLI----YETSTSEL-- 125
           ++R    GIP  +R + W+L+SG       R    +     E        Y++   E+  
Sbjct: 43  LRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQ 102
Query: 126 DIIR----DISRTFPSHVFFQQRHGPGQRSLYN-VLKAYSVYDRDVGYVQGMG-----FL 175
           D  R    DI R  P  +  Q    P    ++  +L  +++     GYVQG+      F 
Sbjct: 103 DTYRQIHIDIPRMSPEALILQ----PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFF 158
Query: 176 AGLLLLYMSEE--------------------DAFWLMVALLKGAVHAPMEGLYQVGLPLV 215
              +  Y+  E                    D +W M  LL G     ++  Y    P +
Sbjct: 159 VVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG-----IQDNYTFAQPGI 213
Query: 216 QQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFE 275
           Q  +   + LV     ++  H  +  +    +A +W   +     P    +R+WD +  E
Sbjct: 214 QMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE 273
Query: 276 GVKI----VFKVGLALLTYCHDDLIKLPFEKLIHALRNFPE---DAMDPDKLLPVAYSIK 328
                   ++     L+ +  + L +  F++L+  L+N P    D  D   LL  AY +K
Sbjct: 274 PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK 333
Query: 329 VS 330
            +
Sbjct: 334 FA 335

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 64/180 (35%), Gaps = 36/180 (20%)
Query: 130 DISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMG-----FLAGLLLLYMS 184
           DI RT P    +Q +    Q SL  +L  +++     GYVQG+      F    L  Y+ 
Sbjct: 113 DIPRTNPHIPLYQFKSV--QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP 170
Query: 185 ------------------------EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLF 220
                                   E D FW +  LL+          Y  G P + + + 
Sbjct: 171 PSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDN-----YIHGQPGILRQVK 225
Query: 221 QFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIV 280
               LVK     L  HF  E +    +A +W   +    F     +R+WD +L E  + V
Sbjct: 226 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEV 285

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 64/180 (35%), Gaps = 36/180 (20%)
Query: 130 DISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMG-----FLAGLLLLYMS 184
           DI RT P    +Q +    Q SL  +L  +++     GYVQG+      F    L  Y+ 
Sbjct: 93  DIPRTNPHIPLYQFKSV--QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP 150
Query: 185 ------------------------EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLF 220
                                   E D FW +  LL+      +   Y  G P + + + 
Sbjct: 151 PSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQ-----ITDNYIHGQPGILRQVK 205
Query: 221 QFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIV 280
               LVK     L  HF  E +    +A +W   +    F     +R WD +L E  + V
Sbjct: 206 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWXNCLLXREFQXGTVIRXWDTYLSETSQEV 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	1e-125
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	1e-122
2qq8_A	334	TBC1 domain family member 14; structural genomics	1e-115
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	1e-66
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	6e-59
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	1e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score =  361 bits (928), Expect = e-125
 Identities = 105/308 (34%), Positives = 164/308 (53%), Gaps = 14/308 (4%)

Query: 50  ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNP 109
           E+ +  W +++      W   +  +P  +   ++ G+P+ LR  VWQL++G  D      
Sbjct: 2   EKILYSWGELL----GKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQ-AML 56

Query: 110 GVYEQLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYV 169
             Y  L+  + S  E  I RDI RTFP+H +F+   G GQ SLY + KAYSVYD D+GY 
Sbjct: 57  DRYRILI-TKDSAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYC 115

Query: 170 QGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEH 229
           QG  FLA +LLL+M EE AF ++V ++       +  LY+     +    +Q + L++E 
Sbjct: 116 QGQSFLAAVLLLHMPEEQAFCVLVKIMY---DYGLRDLYRNNFEDLHCKFYQLERLMQEQ 172

Query: 230 LPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLT 289
           LP L  HF+   +   MYASQWF+T+F+  FP  +   I D+ L EG+ I+F V LALL 
Sbjct: 173 LPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLK 232

Query: 290 YCHDDLIKLPFEKLIHALRN----FPEDAMDPDKLLPVAYSIKVS-KRLEELKSLYEKQN 344
              +DL++  FE  +   R           +  +L+  A +IKV  K+L++ +  Y+   
Sbjct: 233 TSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMR 292

Query: 345 KKVVQSAE 352
           +  +Q  +
Sbjct: 293 ESQLQQED 300

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score =  355 bits (912), Expect = e-122
 Identities = 86/335 (25%), Positives = 174/335 (51%), Gaps = 19/335 (5%)

Query: 30  HGSPHEGVIKSRSAIQFER----EERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKG 85
           H +    ++  R  + +E      +     W KM+   G      ++     +   + +G
Sbjct: 3   HMASENDLLNKRLKLDYEEITPCLKEVTTVWEKMLSTPGRSK---IKFDMEKMHSAVGQG 59

Query: 86  IPDCLRGLVWQLISGSRDLLLMNPGVYEQL------LIYETSTSELDIIRDISRTFPSHV 139
           +P   RG +W+ ++    L    P   +        L+ + ++ +  I+ D+ RTFP+H 
Sbjct: 60  VPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHP 119

Query: 140 FFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGA 199
           +F  + G GQ SLYN+LKAYS+ D++VGY QG+ F+AG+LLL+MSEE+AF ++  L+   
Sbjct: 120 YFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMF-- 177

Query: 200 VHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYS 259
               +   Y+  + ++Q  ++Q   L+ ++   L  H  +  I PS+YA+ WF+T+F+  
Sbjct: 178 -DMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQ 236

Query: 260 FPFHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLP-FEKLIHALRNFPEDA--MD 316
           FP     R++D+   +G +++FKV L+LL      +++    E ++  +++   +   + 
Sbjct: 237 FPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQ 296

Query: 317 PDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQSA 351
            +K +   + + ++K+L+  +  Y    ++++ S+
Sbjct: 297 MEKTINQVFEMDIAKQLQAYEVEYHVLQEELIDSS 331

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score =  336 bits (864), Expect = e-115
 Identities = 95/325 (29%), Positives = 142/325 (43%), Gaps = 33/325 (10%)

Query: 45  QFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSR-- 102
               +   V  W   I     +W+     +   V+    +GIP  +RG VW L  G+   
Sbjct: 13  NLYFQGNAVLTWNNEIL---PNWETMWCSRK--VRDLWWQGIPPSVRGKVWSLAIGNELN 67

Query: 103 ------DLLLMNPGVYEQLLIY---------------ETSTSELDIIRDISRTFPSHVFF 141
                 D+ L       + L                 +   S   I  DISRTFP+   F
Sbjct: 68  ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIF 127

Query: 142 QQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVH 201
           Q + GP    L+++L AY+ Y  DVGYVQGM F+A +L+L +   DAF     LL     
Sbjct: 128 Q-QGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLN---K 183

Query: 202 APMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFP 261
                 ++V   L+  Y   F+   +E+LPKL  HF K  + P +Y   W  T++S S P
Sbjct: 184 PCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLP 243

Query: 262 FHLALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLL 321
             LA RIWDVF  +G + +F+  L +L    D L K+ F  +   L   PED +  ++L 
Sbjct: 244 LDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED-LPAEELF 302

Query: 322 PVAYSIKVSKRLEELKSLYEKQNKK 346
               +I++  R ++   +     K 
Sbjct: 303 ASIATIQMQSRNKKWAQVLTALQKD 327

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score =  213 bits (543), Expect = 1e-66
 Identities = 68/352 (19%), Positives = 122/352 (34%), Gaps = 64/352 (18%)

Query: 29  EHGSPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPD 88
            H   H    ++      ERE  R+ K+++++    +D +         ++R    GIP 
Sbjct: 2   HHHHHHSSGRENLYFQGSEREASRLDKFKQLLAGPNTDLEE--------LRRLSWSGIPK 53

Query: 89  CLRGLVWQLISGSR--------DLLLMNPGVYEQLL--IYETSTSELD------IIRDIS 132
            +R + W+L+SG            L      Y   +   Y++   E+       I  DI 
Sbjct: 54  PVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIP 113

Query: 133 RTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS-------- 184
           R  P  +  Q +          +L  +++     GYVQG+  L     +           
Sbjct: 114 RMSPEALILQPKV---TEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEE 170

Query: 185 -----------------EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVK 227
                            E D +W M  LL G     ++  Y    P +Q  +   + LV 
Sbjct: 171 VDTVDVSGVPAEVLCNIEADTYWCMSKLLDG-----IQDNYTFAQPGIQMKVKMLEELVS 225

Query: 228 EHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKI---VFKVG 284
               ++  H  +  +    +A +W   +     P    +R+WD +  E          V 
Sbjct: 226 RIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVC 285

Query: 285 LALLTYCHDDLI-KLPFEKLIHALRNFPEDAM---DPDKLLPVAYSIKVSKR 332
            A L     +++ +  F++L+  L+N P       D   LL  AY +K +  
Sbjct: 286 AAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFA 337

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score =  194 bits (495), Expect = 6e-59
 Identities = 59/333 (17%), Positives = 104/333 (31%), Gaps = 61/333 (18%)

Query: 49  EERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISG-------- 100
             +R+ K+  ++     D           +++    GIP   R +VW+L+ G        
Sbjct: 4   IIQRISKFDNIL----KDKTII---NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKR 56

Query: 101 SRDLLLMNPGVYEQLL-IYETSTSELD------IIRDISRTFPSHVFFQQRHGPGQRSLY 153
               L      Y   L    +     D      I  DI RT P    +Q +    Q SL 
Sbjct: 57  QEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQ 114

Query: 154 NVLKAYSVYDRDVGYVQGMGFLAGLLLLYMS----------------------------- 184
            +L  +++     GYVQG+  L                                      
Sbjct: 115 RILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDL 174

Query: 185 EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINP 244
           E D FW +  LL+      +   Y  G P + + +     LVK     L  HF  E +  
Sbjct: 175 EADTFWCLTKLLEQ-----ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEF 229

Query: 245 SMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGL--ALLTYCHDDLIKLPFEK 302
             +A +W   +    F     +R+WD +L E  + V       +          +     
Sbjct: 230 IQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVAS 289

Query: 303 LIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEE 335
            +   ++F          +    +++ S ++ +
Sbjct: 290 FVTPTKDFQS-PTTALSNMTPNNAVEDSGKMRQ 321

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score =  154 bits (390), Expect = 1e-44
 Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 23/280 (8%)

Query: 52  RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGV 111
             +K  +++       K        +     R  +P   R LVW+++ G       +   
Sbjct: 24  EEKKSLEIL------LKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAK 77

Query: 112 YE--QLLIYETSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYV 169
               +   Y      L ++R +S   P    + + +      L          D      
Sbjct: 78  VMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLEPD----DE 133

Query: 170 QGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEH 229
             +     +  +     D +W+    +       +   Y+  LP + +    F+  +   
Sbjct: 134 VFLAIAKAMEEMVEDSVDCYWITRRFVNQ-----LNTKYRDSLPQLPK---AFEQYLNLE 185

Query: 230 LPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLT 289
             +L  H       P +    WF   F+   P     R+WD  +    KI+  V + +L 
Sbjct: 186 DGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILL 245

Query: 290 YCHDDLIKLP-FEKLIHALRNFPEDAMDPDKLLPVAYSIK 328
                ++ L   EK+   L N P+D    D ++  A  + 
Sbjct: 246 TFKIKVMALNSAEKITKFLENIPQD--SSDAIVSKAIDLW 283

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 60/386 (15%), Positives = 118/386 (30%), Gaps = 100/386 (25%)

Query: 20  VDRF--GFVKQEHG---SPHEGVIKSRSAIQFEREERRVRKWRKMIGVGGSDWKHYVRRK 74
           V +F    ++  +    SP +   +  S +     E+R R +           K+ V R 
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----DNQVFAKYNVSRL 134

Query: 75  PHVVKRR-----IRKGIPDCLRG--------LVWQLISGSRDLLLMNPGVY--------- 112
              +K R     +R      + G        +   +    +    M+  ++         
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 113 -EQLL-----IYETSTSELDIIRDISRTFPSHV---------FFQQRHGPGQRSLYNVLK 157
            E +L     +            D S      +           + +  P +  L  VL 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLL-VLL 251

Query: 158 AYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPME----GLYQV-GL 212
             +V +              +LL    ++   +L  A      H  ++     L      
Sbjct: 252 --NVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTLTPDEVK 304

Query: 213 PLVQQYLFQFDHLVKEHLPKLGEHFTKEM--INPSMYASQWFITVFSYSFPFHLALRIWD 270
            L+ +YL        + LP+       E+   NP        +++ + S    LA   WD
Sbjct: 305 SLLLKYL----DCRPQDLPR-------EVLTTNPRR------LSIIAESIRDGLAT--WD 345

Query: 271 VFL---FEGVKIVFKVGLALLTYCHDDLIKLPFEKL-IHALRNFPEDAMDPDKLLPVAYS 326
            +     + +  + +  L +L        +  F++L +     FP  A  P  LL + + 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSV-----FPPSAHIPTILLSLIWF 397

Query: 327 IKVSKRLEEL------KSLYEKQNKK 346
             +   +  +       SL EKQ K+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKE 423

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
2qq8_A	334	TBC1 domain family member 14; structural genomics	100.0
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	100.0

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-60  Score=447.38  Aligned_cols=291  Identities=36%  Similarity=0.699  Sum_probs=258.5

Q ss_pred             HHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCChhHHhhhh
Q 040788           52 RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTSELDIIRDI  131 (365)
Q Consensus        52 r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~~~~I~~Dv  131 (365)
                      ..++|.+|++    +|+.+...+++++++++++|||+.+|+.||+.|+|+.... ...+.|..+... .++...+|++|+
T Consensus         4 ~~~~W~~~~~----~w~~~~~~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~-~~~~~Y~~l~~~-~~~~~~~I~~Dv   77 (310)
T 3hzj_A            4 ILYSWGELLG----KWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQ-AMLDRYRILITK-DSAQESVITRDI   77 (310)
T ss_dssp             --CCHHHHHH----HHHTSTTSCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCH-HHHHHHHHHTTS-CCTTHHHHHHHH
T ss_pred             HHHHHHHHHH----HHhhhcccCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcch-hHHHHHHHHHhc-cCCcHHHHHHHH
Confidence            3579999998    7888777788999999999999999999999999975321 234678888654 345678999999


Q ss_pred             hhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCCccccCCC
Q 040788          132 SRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPMEGLYQVG  211 (365)
Q Consensus       132 ~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l~~~~~~~  211 (365)
                      +||+|++++|..+++.+++.|+|||.||+.+||++|||||||+|||+||++++|++|||||+++|..   +.++++|.++
T Consensus        78 ~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~---~~~~~~~~~~  154 (310)
T 3hzj_A           78 HRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYD---YGLRDLYRNN  154 (310)
T ss_dssp             TTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHT---SCGGGGTHHH
T ss_pred             HhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhc---cccccccccc
Confidence            9999999999987778999999999999999999999999999999999999999999999999987   3478999999


Q ss_pred             cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q 040788          212 LPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVGLALLTYC  291 (365)
Q Consensus       212 ~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~lail~~~  291 (365)
                      ++++...+..++.+++.++|+|++||.+.|+++.+|+.+||+|+|++.+|++.++||||+|+++|..+++++|+|++..+
T Consensus       155 ~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~  234 (310)
T 3hzj_A          155 FEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTS  234 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCHHHHHHHHh-CCCCC---CCChhHHHHHHhcCccc-hHHHHHHHHHHHHhhhhhhhh
Q 040788          292 HDDLIKLPFEKLIHALR-NFPED---AMDPDKLLPVAYSIKVS-KRLEELKSLYEKQNKKVVQSA  351 (365)
Q Consensus       292 ~~~Ll~~~~~~i~~~l~-~~~~~---~~d~~~li~~a~~l~~~-~~l~~l~~~~~~~~~~~~~~~  351 (365)
                      +++|+++++++++.+|+ ++|..   ..|++.+++.|++++++ +++.+++++|..+..++.++.
T Consensus       235 ~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~~~~~~l~~~~~ey~~~~~~~~~~~  299 (310)
T 3hzj_A          235 KEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIKVPTKKLKKYEKEYQTMRESQLQQE  299 (310)
T ss_dssp             HHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999997 45643   24789999999999998 789999999999877765443

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=100.00  E-value=3.4e-58  Score=435.78  Aligned_cols=291  Identities=29%  Similarity=0.587  Sum_probs=258.9

Q ss_pred             HHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhh-------cCcchHHHHhhhccCCCh
Q 040788           52 RVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLL-------MNPGVYEQLLIYETSTSE  124 (365)
Q Consensus        52 r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~-------~~~~~y~~l~~~~~~~~~  124 (365)
                      +.++|.++++..|.   .......+++++++++|||+.+|+.||+.|+|+.....       .+.+.|..+.... ....
T Consensus        29 ~~~~W~~~l~~~~~---~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~~-~~~~  104 (331)
T 3qye_A           29 VTTVWEKMLSTPGR---SKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQL-TSQQ  104 (331)
T ss_dssp             HHHHHHHHHTCTTG---GGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTSC-CTTH
T ss_pred             HHHHHHHHhccCCC---CcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHhc-CCch
Confidence            56899999974332   22344679999999999999999999999999764322       2457899987643 4556


Q ss_pred             hHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccCCCC
Q 040788          125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVHAPM  204 (365)
Q Consensus       125 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~~~l  204 (365)
                      .+|++|++||+|++++|..+.+.+++.|+|||.+|+.+||++|||||||+|||+|+++++|++|||||+++|...   .+
T Consensus       105 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~---~~  181 (331)
T 3qye_A          105 HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDM---GL  181 (331)
T ss_dssp             HHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTT---CG
T ss_pred             hHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhc---Cc
Confidence            899999999999999999887889999999999999999999999999999999999999999999999999873   47


Q ss_pred             ccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHHH
Q 040788          205 EGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKVG  284 (365)
Q Consensus       205 ~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~~  284 (365)
                      +++|.+++++++..+..++.+++.++|+|++||.+.|+.+.+|+.+||+|+|++.+|++.++||||+|+++|..+++++|
T Consensus       182 ~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~va  261 (331)
T 3qye_A          182 RKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVA  261 (331)
T ss_dssp             GGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHhhCC-CHHHHHHHHhCCCCCC--CChhHHHHHHhcCccchHHHHHHHHHHHHhhhhhh
Q 040788          285 LALLTYCHDDLIKL-PFEKLIHALRNFPEDA--MDPDKLLPVAYSIKVSKRLEELKSLYEKQNKKVVQ  349 (365)
Q Consensus       285 lail~~~~~~Ll~~-~~~~i~~~l~~~~~~~--~d~~~li~~a~~l~~~~~l~~l~~~~~~~~~~~~~  349 (365)
                      +||+..+++.|+++ ++++++.+|++.++..  .|++.+++.|+++++++++.+++++|..+.+....
T Consensus       262 laiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~s~~l~~~e~ey~~l~~~~~~  329 (331)
T 3qye_A          262 LSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDIAKQLQAYEVEYHVLQEELID  329 (331)
T ss_dssp             HHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhc
Confidence            99999999999997 8999999999854432  47889999999999999999999999998776543

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-57  Score=431.49  Aligned_cols=280  Identities=33%  Similarity=0.606  Sum_probs=245.0

Q ss_pred             HHHHHHHH-HHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhc---------
Q 040788           50 ERRVRKWR-KMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYE---------  119 (365)
Q Consensus        50 ~~r~~kW~-~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~---------  119 (365)
                      .+|..+|. +|+.    +|+.+.  ..+++++++++|||+.+|+.||+.++|+.  ...+++.|+.++...         
T Consensus        18 ~~~~~~W~~~il~----~w~~~~--~~~~lr~l~~~GIP~~lR~~vW~~llg~~--~~~~~~~y~~ll~~~~~~~~~~~~   89 (334)
T 2qq8_A           18 GNAVLTWNNEILP----NWETMW--CSRKVRDLWWQGIPPSVRGKVWSLAIGNE--LNITHELFDICLARAKERWRSLST   89 (334)
T ss_dssp             SCHHHHHHHTTGG----GCC--C--CCHHHHHHHHTCCCHHHHHHHHHHHHCCT--TCCCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHH----hHHhcc--ChHHHHHHHHCCCCHHHHHHHHHHHhCCc--cccCHHHHHHHHHHHHHHHHHhcc
Confidence            46788998 5886    787653  56899999999999999999999999974  245567777665321         


Q ss_pred             ----------------cCCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc
Q 040788          120 ----------------TSTSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM  183 (365)
Q Consensus       120 ----------------~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~  183 (365)
                                      ......+|++||.||||++++|+. .+++++.|+|||.||+.+||++|||||||+|||+||+++
T Consensus        90 ~~~~~~~~d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~  168 (334)
T 2qq8_A           90 GGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL  168 (334)
T ss_dssp             -----------------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS
T ss_pred             ccccCcccccccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC
Confidence                            022346899999999999999986 457899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChH
Q 040788          184 SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFH  263 (365)
Q Consensus       184 ~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~  263 (365)
                      +|++|||||+++|+...   ..++|..+.+++...+..++.+++..+|+|++||.+.|+++.+|+.+||+|+|++++|++
T Consensus       169 ~E~~aF~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~  245 (334)
T 2qq8_A          169 DTADAFIAFSNLLNKPC---QMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLD  245 (334)
T ss_dssp             CHHHHHHHHHHHHTSHH---HHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHH
T ss_pred             CHHHHHHHHHHHHHhhh---HHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHH
Confidence            99999999999998732   356888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCCCCCCChhHHHHHHhcCccchHHHHHHHHHHH
Q 040788          264 LALRIWDVFLFEGVKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDAMDPDKLLPVAYSIKVSKRLEELKSLYEK  342 (365)
Q Consensus       264 ~~lriwD~~l~~g~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~~~~~d~~~li~~a~~l~~~~~l~~l~~~~~~  342 (365)
                      .++||||+|+++|..+++++|+||+..+++.|+++++++++.+|+++|.. +|++.++..|.+++++.+.++.++.+..
T Consensus       246 ~~lriWD~~l~eg~~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~-~d~~~l~~~a~~l~~~~~~k~~~~~~~~  323 (334)
T 2qq8_A          246 LACRIWDVFCRDGEEFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED-LPAEELFASIATIQMQSRNKKWAQVLTA  323 (334)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT-CCHHHHHHHHHHCCCEETTEEHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc-CCHHHHHHHHHHccCcHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987 7999999999999997543344444433

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=100.00  E-value=4.3e-53  Score=402.87  Aligned_cols=269  Identities=23%  Similarity=0.389  Sum_probs=231.9

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCH--------hHhhcCcchHHHHh
Q 040788           45 QFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSR--------DLLLMNPGVYEQLL  116 (365)
Q Consensus        45 ~~~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~--------~~~~~~~~~y~~l~  116 (365)
                      ..++|..|.++|.++++.    |.    ...+++++++++|||+.+|+.||+.++|+.        .....+++.|..+.
T Consensus        18 ~~~~e~~r~~kw~~~l~~----~~----~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~   89 (345)
T 2qfz_A           18 GSEREASRLDKFKQLLAG----PN----TDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFI   89 (345)
T ss_dssp             ------CHHHHHHHHHHC----SB----CCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHcC----CC----CCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999983    32    346899999999999999999999999963        11223456788887


Q ss_pred             hhcc--------CCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----
Q 040788          117 IYET--------STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-----  183 (365)
Q Consensus       117 ~~~~--------~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-----  183 (365)
                      ....        .....+|++||.||+|+ ++|+.+  .+++.|+|||.+||.+||++|||||||+|||+|++++     
T Consensus        90 ~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~  166 (345)
T 2qfz_A           90 EHYYDSRNDEVHQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYI  166 (345)
T ss_dssp             HHC--------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGC
T ss_pred             HHhhcCCCccchHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhc
Confidence            5421        12347899999999999 999864  5789999999999999999999999999999998754     


Q ss_pred             --------------------ChhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Q 040788          184 --------------------SEEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMIN  243 (365)
Q Consensus       184 --------------------~E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~  243 (365)
                                          +|++|||||+++|+.     ++++|..+++++...+..++.+++..+|+|++||.+.|++
T Consensus       167 ~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~-----~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~  241 (345)
T 2qfz_A          167 EAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDG-----IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVR  241 (345)
T ss_dssp             C-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHT-----SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCC
T ss_pred             ccccccccchhhhhhhhhhhHHHHHHHHHHHHHHc-----cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence                                289999999999998     4788999999999999999999999999999999999999


Q ss_pred             chhchHHHHHHhccccCChHHHHHHHHHHHhcChH---HHHHHHHHHHHHhHHHhhC-CCHHHHHHHHhCCCCCC---CC
Q 040788          244 PSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVK---IVFKVGLALLTYCHDDLIK-LPFEKLIHALRNFPEDA---MD  316 (365)
Q Consensus       244 ~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~---~l~~~~lail~~~~~~Ll~-~~~~~i~~~l~~~~~~~---~d  316 (365)
                      +.+|+++||+|+|++++|++.++||||+|+++|..   +++++|+|++..++++|++ .++++++.+|+++|...   .|
T Consensus       242 ~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~d  321 (345)
T 2qfz_A          242 YLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDED  321 (345)
T ss_dssp             HHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHH
T ss_pred             hhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhH
Confidence            99999999999999999999999999999999976   7899999999999999995 79999999999999864   36


Q ss_pred             hhHHHHHHhcCcc
Q 040788          317 PDKLLPVAYSIKV  329 (365)
Q Consensus       317 ~~~li~~a~~l~~  329 (365)
                      ++.|++.|+.++.
T Consensus       322 i~~ll~~A~~l~~  334 (345)
T 2qfz_A          322 ISLLLAEAYRLKF  334 (345)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8899999998764

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=100.00  E-value=1.5e-52  Score=404.85  Aligned_cols=266  Identities=26%  Similarity=0.385  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHh--------HhhcCcchHHHHhhhcc-
Q 040788           50 ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRD--------LLLMNPGVYEQLLIYET-  120 (365)
Q Consensus        50 ~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~--------~~~~~~~~y~~l~~~~~-  120 (365)
                      .+|.++|.++++.    +.   ....++|++++++|||+.+|+.||+.|+|+..        ....+++.|..++.... 
T Consensus         5 ~~R~~kw~~lL~~----~~---~~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~   77 (396)
T 1fkm_A            5 IQRISKFDNILKD----KT---IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFS   77 (396)
T ss_dssp             HHHHHHHHHHHSS----CS---BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHcC----CC---CCCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhh
Confidence            5689999999984    32   13568999999999999999999999999732        11234567888875421 


Q ss_pred             ------CCChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----------
Q 040788          121 ------STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-----------  183 (365)
Q Consensus       121 ------~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-----------  183 (365)
                            .....+|++||.||+|++++|+.+  .+++.|+|||.+|+.+||++|||||||+|||+||+++           
T Consensus        78 ~~~~~~~~~~~qI~~Dv~RT~p~~~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~  155 (396)
T 1fkm_A           78 DQHSRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID  155 (396)
T ss_dssp             SSCSTHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred             ccCcccHHHHHHHHHHhhhhCCCcccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccc
Confidence                  123468999999999999999864  6899999999999999999999999999999998753           


Q ss_pred             -----------C-------hhhHHHHHHHHHhcccCCCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCch
Q 040788          184 -----------S-------EEDAFWLMVALLKGAVHAPMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPS  245 (365)
Q Consensus       184 -----------~-------E~~aF~~l~~l~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~  245 (365)
                                 +       |++|||||+++|..     +.++|.++++++...+..++.+|+..+|+|++||.+.|+.+.
T Consensus       156 ~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~-----~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~  230 (396)
T 1fkm_A          156 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ-----ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFI  230 (396)
T ss_dssp             GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGG-----GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTH
T ss_pred             cccccchhhccchhhhhhhHHHHHHHHHHHHHH-----HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence                       3       88999999999998     578899999999999999999999999999999999999999


Q ss_pred             hchHHHHHHhccccCChHHHHHHHHHHHhcC-------------------------------------------------
Q 040788          246 MYASQWFITVFSYSFPFHLALRIWDVFLFEG-------------------------------------------------  276 (365)
Q Consensus       246 ~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g-------------------------------------------------  276 (365)
                      +|+++||+|+|+++||++.++||||+||++|                                                 
T Consensus       231 ~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  310 (396)
T 1fkm_A          231 QFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPN  310 (396)
T ss_dssp             HHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999998                                                 


Q ss_pred             --------------hHHHHHHHHHHHHHhHHHhhCCCHHHHHHHHhCCCCCC---CChhHHHHHHhcCcc
Q 040788          277 --------------VKIVFKVGLALLTYCHDDLIKLPFEKLIHALRNFPEDA---MDPDKLLPVAYSIKV  329 (365)
Q Consensus       277 --------------~~~l~~~~lail~~~~~~Ll~~~~~~i~~~l~~~~~~~---~d~~~li~~a~~l~~  329 (365)
                                    ..+++++|+|+|..+++.|+++++++++.+|+++|...   .|++.++..|+.++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~  380 (396)
T 1fkm_A          311 NAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS  380 (396)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence                          37899999999999999999999999999999999753   488999999986653

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=100.00  E-value=2.6e-50  Score=375.01  Aligned_cols=265  Identities=16%  Similarity=0.254  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcC---CCcchHHHHHHHHhCCHhHhhcCcchHHHHhhhccCCC
Q 040788           47 EREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKG---IPDCLRGLVWQLISGSRDLLLMNPGVYEQLLIYETSTS  123 (365)
Q Consensus        47 ~~e~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~G---IP~~~R~~vW~~ll~~~~~~~~~~~~y~~l~~~~~~~~  123 (365)
                      .++.++.+++.+.++.+..+        -++|+++++.|   +|+++|+.||+.|+|+....  .++.|... .....+.
T Consensus        14 ~~~~~k~~~i~~~l~~~~~d--------l~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~--~~~~~~~~-~~~~~~~   82 (292)
T 4hl4_A           14 AKRKKKVAEIHQALNSDPTD--------VAALRRMAISEGGLLTDEIRRKVWPKLLNVNAND--PPPISGKN-LRQMSKD   82 (292)
T ss_dssp             HHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCS--CCSCCCTT-HHHHCTT
T ss_pred             chhHHHHHHHHHHHcCCccc--------HHHHHHHHcCCCCCCChhHHHHHHHHHhCCCccc--CCCchhhh-hcccchh
Confidence            34566778899999754332        36899998854   89999999999999986432  23334322 2334667


Q ss_pred             hhHHhhhhhhcCCCcccccc--CCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhcChhhHHHHHHHHHhcccC
Q 040788          124 ELDIIRDISRTFPSHVFFQQ--RHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLMVALLKGAVH  201 (365)
Q Consensus       124 ~~~I~~Dv~Rt~~~~~~f~~--~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~~E~~aF~~l~~l~~~~~~  201 (365)
                      ..+|.+||.||||+++.|..  ..+.+++.|.|||.+|+.+||++|||||||+|||+||++++|++|||||+++++.   
T Consensus        83 ~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~---  159 (292)
T 4hl4_A           83 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTH---  159 (292)
T ss_dssp             HHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHT---
T ss_pred             HHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHH---
Confidence            78999999999999998753  2346788999999999999999999999999999999999999999999999997   


Q ss_pred             CCCccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCC-hHHHHHHHHHHHhcChHHH
Q 040788          202 APMEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFP-FHLALRIWDVFLFEGVKIV  280 (365)
Q Consensus       202 ~~l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp-~~~~lriwD~~l~~g~~~l  280 (365)
                       .++++|.++++++...+..++.+++..+|+|++||.+.++. .+|+.+||+|+|++++| ++.++||||+|+++|..++
T Consensus       160 -~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~  237 (292)
T 4hl4_A          160 -HLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMP  237 (292)
T ss_dssp             -TTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHH
T ss_pred             -HHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHH
Confidence             36889999999999999999999999999999999999995 69999999999999996 9999999999999999999


Q ss_pred             HHHHHHHHHHhHHHhhCC--CHHHHHHHHhCCCCCCCChhHHHHHHhcCc
Q 040788          281 FKVGLALLTYCHDDLIKL--PFEKLIHALRNFPEDAMDPDKLLPVAYSIK  328 (365)
Q Consensus       281 ~~~~lail~~~~~~Ll~~--~~~~i~~~l~~~~~~~~d~~~li~~a~~l~  328 (365)
                      +++|+|++..++++|+++  +++.++.+|+++|.. .|++.+++.|..+.
T Consensus       238 ~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~-~d~~~li~~A~~l~  286 (292)
T 4hl4_A          238 IYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQD-LPYETLISRAGDLF  286 (292)
T ss_dssp             HHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSS-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Confidence            999999999999999995  788999999999965 79999999998753

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=301.21  Aligned_cols=246  Identities=17%  Similarity=0.290  Sum_probs=191.1

Q ss_pred             HHHHHHhhccCCCcchhcccChHHHHHHHhcC-CCcchHHHHHHHHhCC--------HhHhhcCcchHHHHhhhccCCCh
Q 040788           54 RKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKG-IPDCLRGLVWQLISGS--------RDLLLMNPGVYEQLLIYETSTSE  124 (365)
Q Consensus        54 ~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~G-IP~~~R~~vW~~ll~~--------~~~~~~~~~~y~~l~~~~~~~~~  124 (365)
                      ++...+++.+.        ...++|++++++| ||+.+|+.||+.|+|.        ........+.|..++..      
T Consensus        27 ~~~~~ll~~~~--------~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~------   92 (294)
T 3qwl_A           27 KSLEILLKDDR--------LDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA------   92 (294)
T ss_dssp             HHHHHHTTSSB--------CCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHhcCCC--------CCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh------
Confidence            46677886422        2458899999999 9999999999999997        33344456678887754      


Q ss_pred             hHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHH-hcChhhHHHHHHHHHhcccCCC
Q 040788          125 LDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLL-YMSEEDAFWLMVALLKGAVHAP  203 (365)
Q Consensus       125 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~-~~~E~~aF~~l~~l~~~~~~~~  203 (365)
                      .++.+++.+..|-+..|-.....+..   .+..++ ..+++ .++|||..||++++. +.+|++|||||+++|++     
T Consensus        93 ~~~~r~I~~~tP~~~vfl~~~~~~~~---~l~~~~-~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~-----  162 (294)
T 3qwl_A           93 LKVVRFVSDATPQAEVYLRMYQLESG---KLPRSP-SFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ-----  162 (294)
T ss_dssp             HHHTTSCCTTSCHHHHHHHHHHHHHT---CCCSST-TSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-----
T ss_pred             hhhhhhhhccCchHHHHHHHHHcccc---cccccc-cCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----
Confidence            22334444433332222211000000   001111 11233 356999999998875 45899999999999998     


Q ss_pred             CccccCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcChHHHHHH
Q 040788          204 MEGLYQVGLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGVKIVFKV  283 (365)
Q Consensus       204 l~~~~~~~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~~~l~~~  283 (365)
                      +.++|.+++++++..   ++.+++..+|+|++||.+.|+.+.+++.+||+|+|++++|++.++||||+++++|.++++++
T Consensus       163 l~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~v  239 (294)
T 3qwl_A          163 LNTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFV  239 (294)
T ss_dssp             HHTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHH
T ss_pred             HHHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHH
Confidence            578999999998865   48999999999999999999998888889999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHhhCCCH-HHHHHHHhCCCCCCCChhHHHHHHhcCc
Q 040788          284 GLALLTYCHDDLIKLPF-EKLIHALRNFPEDAMDPDKLLPVAYSIK  328 (365)
Q Consensus       284 ~lail~~~~~~Ll~~~~-~~i~~~l~~~~~~~~d~~~li~~a~~l~  328 (365)
                      |+|+|+.+++.|+++++ ++++.+|+++|..  |++.+++.|+.+.
T Consensus       240 alAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~--di~~ll~~A~~l~  283 (294)
T 3qwl_A          240 AVEILLTFKIKVMALNSAEKITKFLENIPQD--SSDAIVSKAIDLW  283 (294)
T ss_dssp             HHHHHHHTHHHHHHCCSHHHHHHHHTTCCST--THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHcCCcc--cHHHHHHHHHHHH
Confidence            99999999999999876 8999999999975  7999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	2e-25
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	1e-20

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.6 bits (247), Expect = 2e-25
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 53/192 (27%)

Query: 51  RRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPG 110
           +R+ K+  ++       K  + ++   +++    GIP   R +VW+L+ G   +      
Sbjct: 5   QRISKFDNIL-----KDKTIINQQ--DLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQE 57

Query: 111 VYEQLLIYET---------------STSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNV 155
            + Q    E                  +   I  DI RT P    +Q      Q SL  +
Sbjct: 58  GFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQ--FKSVQNSLQRI 115

Query: 156 LKAYSVYDRDVGYVQGMGFLAGLLLLYMS-----------------------------EE 186
           L  +++     GYVQG+  L                                      E 
Sbjct: 116 LYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175

Query: 187 DAFWLMVALLKG 198
           D FW +  LL+ 
Sbjct: 176 DTFWCLTKLLEQ 187

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.0 bits (212), Expect = 1e-20
 Identities = 18/91 (19%), Positives = 30/91 (32%)

Query: 211 GLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWD 270
           G P + + +     LVK     L  HF  E +    +A +W   +    F     +R+WD
Sbjct: 1   GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 60

Query: 271 VFLFEGVKIVFKVGLALLTYCHDDLIKLPFE 301
            +L E  + V              +      
Sbjct: 61  TYLSETSQEVTSSYSMSSNDIKPPVTPTEPR 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.96
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.83

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-30  Score=222.41  Aligned_cols=140  Identities=26%  Similarity=0.383  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHhhccCCCcchhcccChHHHHHHHhcCCCcchHHHHHHHHhCCHhH--------hhcCcchHHHHhhhccC
Q 040788           50 ERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDL--------LLMNPGVYEQLLIYETS  121 (365)
Q Consensus        50 ~~r~~kW~~~l~~~~~~~~~~~~~~~~klk~~~~~GIP~~~R~~vW~~ll~~~~~--------~~~~~~~y~~l~~~~~~  121 (365)
                      .+|..+|.+++...     .  ..+.++|++++++|||+.+|+.||+.|+|+...        .......|.........
T Consensus         4 ~~~i~~~~~~l~~~-----~--~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~   76 (194)
T d1fkma1           4 IQRISKFDNILKDK-----T--IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFS   76 (194)
T ss_dssp             HHHHHHHHHHHSSC-----S--BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhccc-----C--CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhh
Confidence            36788999999632     1  124688999999999999999999999996311        11122334444332111


Q ss_pred             -------CChhHHhhhhhhcCCCccccccCCCcchHHHHHHHHHHHHhcCCCCcccchhHHHHHHHHhc-----------
Q 040788          122 -------TSELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-----------  183 (365)
Q Consensus       122 -------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~a~~~~~p~igY~QGm~~ia~~ll~~~-----------  183 (365)
                             ....+|++||.||+|++++|..+  ++++.|+|||.+||.+||++|||||||+|||+|++++           
T Consensus        77 ~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~--~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~  154 (194)
T d1fkma1          77 DQHSRDIPTWHQIEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQID  154 (194)
T ss_dssp             SSCSTHHHHHHHHHHHGGGSSTTSGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGG
T ss_pred             cccccchHHHHHHHHHHHhcCCcccccccc--hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhh
Confidence                   12357999999999999999864  6899999999999999999999999999999999764           


Q ss_pred             ------------------ChhhHHHHHHHHHhc
Q 040788          184 ------------------SEEDAFWLMVALLKG  198 (365)
Q Consensus       184 ------------------~E~~aF~~l~~l~~~  198 (365)
                                        .|++|||||+++|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~  187 (194)
T d1fkma1         155 DVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQ  187 (194)
T ss_dssp             GTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence                              178999999999998

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.1e-20  Score=161.68  Aligned_cols=117  Identities=26%  Similarity=0.422  Sum_probs=107.6

Q ss_pred             CcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCchhchHHHHHHhccccCChHHHHHHHHHHHhcCh-------------
Q 040788          211 GLPLVQQYLFQFDHLVKEHLPKLGEHFTKEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLFEGV-------------  277 (365)
Q Consensus       211 ~~~~l~~~~~~~~~ll~~~~P~l~~hl~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriwD~~l~~g~-------------  277 (365)
                      |+||++..+..++.+++.++|+||+||++.|+++.+|+++||+|+|++++|++.++||||+|+++|.             
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~   80 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSND   80 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhh
Confidence            5799999999999999999999999999999999999999999999999999999999999999754             


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHHhHHHhhCCCHHHHHHHH
Q 040788          278 --------------------------------------------------KIVFKVGLALLTYCHDDLIKLPFEKLIHAL  307 (365)
Q Consensus       278 --------------------------------------------------~~l~~~~lail~~~~~~Ll~~~~~~i~~~l  307 (365)
                                                                        .+..++|+|++...+++|++.++++++.+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~~df~~~l~~L  160 (188)
T d1fkma2          81 IKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFL  160 (188)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHH
T ss_pred             hccccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence                                                              567899999999999999999999999999


Q ss_pred             hCCCCCC---CChhHHHHHHhcC
Q 040788          308 RNFPEDA---MDPDKLLPVAYSI  327 (365)
Q Consensus       308 ~~~~~~~---~d~~~li~~a~~l  327 (365)
                      +++|...   .|.+.++.+|+-+
T Consensus       161 q~~P~~~~~~~di~~ll~~A~~~  183 (188)
T d1fkma2         161 QNPPTKDWTETDIEMLLSEAFIW  183 (188)
T ss_dssp             TSCSCTTCCHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCCcccHHHHHHHHHHH
Confidence            9998753   3677888888643