Citrus Sinensis ID: 040790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MSSSSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRRGRFG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccHcHccccc
Coil and Loop (DISEMBL)
mssssfssFYSTWFEQLNQLVQQLSaaarppttydqHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHwiagwrptTVFHLVYTESSTLFESHIVDILrglrtgdlgdlspsqfrRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRkwgldqdrrrgrfg
Flexible Loop (DISEMBL)
MSSSSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSivqkaddlrlrTVRRVVDLLTTQQAVEFLIAAAELqfgvrkwgldqdrrrgrfg
Low Complexity Region (SEG)
MssssfssfysTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIlrglrtgdlgdlSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAddlrlrtvrrvvdllttQQAVEFLIAAAELQFGVRKWGLDQDRRRGRFG
Disordered region (IsUnstruct)
********FYSTWFEQLNQLVQQLSAA*****TYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL****FRRVSELQCETV****AITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGL**********
Disordered Region (DISOPRED)
**SSSFSSFYSTWFEQLNQLVQQL****************EKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESS***************************************************************ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRK*************
Disordered Region (DISEMBL)
*********YSTWFEQLNQLVQQL************HQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRRGRFG
Disordered Region (DISPRO)
MSSSSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLD*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRRGRFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q39237	368	Transcription factor TGA1	no	no	0.844	0.529	0.264	5e-15
Q39234	384	Transcription factor TGA3	no	no	0.792	0.476	0.274	8e-15
Q41558	476	Transcription factor HBP-	N/A	no	0.796	0.386	0.245	9e-15
Q39162	364	Transcription factor TGA4	no	no	0.848	0.538	0.269	5e-14
O24160	456	TGACG-sequence-specific D	N/A	no	0.796	0.403	0.232	1e-13
Q93ZE2	368	Transcription factor TGA7	no	no	0.800	0.502	0.264	3e-13
Q39163	330	Transcription factor TGA5	no	no	0.852	0.596	0.259	6e-13
P23923	332	Transcription factor HBP-	N/A	no	0.774	0.539	0.238	8e-13
P43273	330	Transcription factor TGA2	no	no	0.852	0.596	0.235	1e-12
Q39140	330	Transcription factor TGA6	no	no	0.852	0.596	0.235	2e-12

>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 13/208 (6%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQ 63
           ++F   Y  W E+ N+ + +L         +    +L  LV   + HY E +++KS+ A+
Sbjct: 154 AAFEMEYGHWVEEQNRQICELRTVLH---GHINDIELRSLVENAMKHYFELFRMKSSAAK 210

Query: 64  RDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGD 123
            DVF V +  W +S ER   WI G+RP+ +  ++      L +  ++D+          +
Sbjct: 211 ADVFFVMSGMWRTSAERFFLWIGGFRPSDLLKVLLPHFDVLTDQQLLDVC---------N 261

Query: 124 LSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAD 183
           L  S  +    L     K ++ + D ++  Q G    +   ++++D ++  LVS V +AD
Sbjct: 262 LKQSCQQAEDALTQGMEKLQHTLADCVAAGQLGEGSYIPQVNSAMD-RLEALVSFVNQAD 320

Query: 184 DLRLRTVRRVVDLLTTQQAVEFLIAAAE 211
            LR  T++++  +LTT+QA   L+A  E
Sbjct: 321 HLRHETLQQMYRILTTRQAARGLLALGE 348

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 39/222 (17%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQ 63
           ++F   Y+ W E+ N+ V ++  A +    +    +L+ LV   L HY   +++K+  A+
Sbjct: 168 AAFEMEYTHWLEEQNRRVSEIRTALQ---AHIGDIELKMLVDSCLNHYANLFRMKADAAK 224

Query: 64  RDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLV--YTESSTLFESHIVDILRGLRTGDL 121
            DVF + +  W +S ER   WI G+RP+ + ++V  Y E                     
Sbjct: 225 ADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEP-------------------- 264

Query: 122 GDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELV------------GDCSASVD 169
             L+  Q   V  LQ  + + E A++  L + Q G  E +            G   AS  
Sbjct: 265 --LTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVESIAIQIKVVESVNHGAPMASAM 322

Query: 170 EKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAE 211
           E ++ L S V +AD LR +T++++  +LTT+QA   L+A  E
Sbjct: 323 ENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGE 364

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 40/224 (17%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           +F   Y+ W E+ N+ + +L AAA      D   DL K+V   ++ Y E++++K   A+ 
Sbjct: 258 AFDMEYARWLEEHNKHINELRAAANAHAGDD---DLRKIVDSIMSQYDEFFRLKGVAAKA 314

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DVF+V +  W +  ER   W+ G+R + +  L+                     G L  L
Sbjct: 315 DVFHVLSGMWKTPAERCFMWLGGFRSSELLKLL--------------------AGQLEPL 354

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCS-----------------AS 167
           +  Q   +  LQ  + + E+A++  +   Q   +E +   S                 A 
Sbjct: 355 TEQQLTGICNLQQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSGNVASYMGQMAM 414

Query: 168 VDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAE 211
              K+  L + +++AD+LRL+T++++  +LTT+Q+   L+A ++
Sbjct: 415 AMGKLGTLENFLRQADNLRLQTLQQMQRILTTRQSARALLAISD 458

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q39162|TGA4_ARATH Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 19/215 (8%)

Query: 1   MSSS--SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLE--KLVAKTLTHYTEYYK 56
           MSS   +F   Y  W E+ N+ + +L         + Q  D+E   LV   + HY + ++
Sbjct: 145 MSSGIVAFEMEYGHWVEEQNRQICELRT-----VLHGQVSDIELRSLVENAMKHYFQLFR 199

Query: 57  VKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGL 116
           +KSA A+ DVF V +  W +S ER   WI G+RP+ +  ++      L +  ++D+    
Sbjct: 200 MKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKVLLPHFDPLTDQQLLDVC--- 256

Query: 117 RTGDLGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLV 176
                 +L  S  +    L     K ++ + + ++  + G    +   + ++ E++  LV
Sbjct: 257 ------NLRQSCQQAEDALSQGMEKLQHTLAESVAAGKLGEGSYIPQMTCAM-ERLEALV 309

Query: 177 SIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAE 211
           S V +AD LR  T++++  +LTT+QA   L+A  E
Sbjct: 310 SFVNQADHLRHETLQQMHRILTTRQAARGLLALGE 344

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 40/224 (17%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           +F + YS W E+ N+ + +L  A      +    +L  +V     H+ E ++VK   A+ 
Sbjct: 235 AFDAEYSRWLEEHNKHINELRTAV---NAHASDPELRSIVNNVTAHFDEVFRVKGNAAKA 291

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DVF+V +  W +  ER   WI G+RP+ +  L+  +   L E  +  I            
Sbjct: 292 DVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVNQLEPLTEQQLAGIY----------- 340

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVD--------------- 169
                     LQ  + + E+A++  +   Q   +E + + S + +               
Sbjct: 341 ---------NLQQSSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMGQMAM 391

Query: 170 --EKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAE 211
              K+  L   +++AD+LR +T++++  +LTT+Q+   L+A  E
Sbjct: 392 AMGKLGTLEGFLRQADNLRQQTLQQMHRVLTTRQSARALLAINE 435

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Nicotiana tabacum (taxid: 4097)

>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 34/219 (15%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQ 63
           +SF   YS W ++ ++ V +L  A +   ++    +L+ LV   L HY   +++KS  A+
Sbjct: 153 ASFEMEYSHWLQEQSRRVSELRTALQ---SHISDIELKMLVESCLNHYANLFQMKSDAAK 209

Query: 64  RDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGD 123
            DVF + +  W +S ER   WI G+RP+ + ++V                       L  
Sbjct: 210 ADVFYLISGMWRTSTERFFQWIGGFRPSELLNVVMPY--------------------LQP 249

Query: 124 LSPSQFRRVSELQCETVKEENAITDELSEWQDGASE-LVGDC----------SASVDEKI 172
           L+  Q   V  LQ  + + E+A++  + + Q   +E +V D            A+  E +
Sbjct: 250 LTDQQILEVRNLQQSSQQAEDALSQGIDKLQQSLAESIVIDAVIESTHYPTHMAAAIENL 309

Query: 173 RLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAE 211
           + L   V +AD LR +T++++  +LTT+Q+   L+A  E
Sbjct: 310 QALEGFVNQADHLRQQTLQQMAKILTTRQSARGLLALGE 348

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 104/204 (50%), Gaps = 7/204 (3%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           +F   Y  W E  N+ +++LS+A     T     +L  +V   + HY E Y++K   A+ 
Sbjct: 113 AFDVEYRRWQEDKNRQMKELSSAIDSHAT---DSELRIIVDGVIAHYEELYRIKGNAAKS 169

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DVF++ +  W +  ER   W+ G+R + +  L+ ++   L E   +DI    ++    + 
Sbjct: 170 DVFHLLSGMWKTPAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDINNLQQSSQQAED 229

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADD 184
           + SQ   +  LQ +++ +  +     S      +  +G  + ++  K+  L   +++AD+
Sbjct: 230 ALSQG--MDNLQ-QSLADTLSSGTLGSSSSGNVASYMGQMAMAMG-KLGTLEGFIRQADN 285

Query: 185 LRLRTVRRVVDLLTTQQAVEFLIA 208
           LRL+T +++V LLTT+Q+   L+A
Sbjct: 286 LRLQTYQQMVRLLTTRQSARALLA 309

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 43/222 (19%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           +F + Y+ W E+ N+ V +L AA      +    +L  +V K ++HY E +K K   A+ 
Sbjct: 113 AFDTEYARWLEEHNRQVNELRAAV---NAHAGDTELRSVVEKIMSHYDEIFKQKGNAAKA 169

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DVF+V +  W +  ER   W+ G+RP+ +  L+ T+                    L  L
Sbjct: 170 DVFHVLSGMWKTPAERCFLWLGGFRPSELLKLLSTQ--------------------LEPL 209

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASE-------------------LVGDCS 165
           +  Q   +  LQ  + + E+A++  +   Q   +E                    +G  +
Sbjct: 210 TEQQLSGICNLQQSSQQAEDALSQGMEALQQSLAETLAGSIGSSGSGSTGNVANYMGQMA 269

Query: 166 ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLI 207
            ++  K+  L + + +AD+LR +T++++  +LTT+Q+   L+
Sbjct: 270 MAMG-KLGTLENFLSQADNLRQQTLQQMQRILTTRQSARALL 310

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 106/204 (51%), Gaps = 7/204 (3%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           +F + +S W E+ N+ + +L +A      +    +L  +V   + HY E +++KS  A+ 
Sbjct: 113 AFDAEHSRWLEEKNKQMNELRSAL---NAHAGDSELRIIVDGVMAHYEELFRIKSNAAKN 169

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DVF++ +  W +  ER   W+ G+R + +  L+  +   + E  ++ I    +T    + 
Sbjct: 170 DVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQLMGINNLQQTSQQAED 229

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADD 184
           + SQ   +  LQ +++ +  +     S      +  +G  + ++  K+  L   +++AD+
Sbjct: 230 ALSQG--MESLQ-QSLADTLSSGTLGSSSSGNVASYMGQMAMAMG-KLGTLEGFIRQADN 285

Query: 185 LRLRTVRRVVDLLTTQQAVEFLIA 208
           LRL+T+++++ +LTT+Q+   L+A
Sbjct: 286 LRLQTLQQMIRVLTTRQSARALLA 309

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 107/204 (52%), Gaps = 7/204 (3%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           +F + +S W E+ N+ + +L +A      +    +L  +V   + HY E +++KS  A+ 
Sbjct: 113 AFDAEHSRWLEEKNRQMNELRSAL---NAHAGDTELRIIVDGVMAHYEELFRIKSNAAKN 169

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DVF++ +  W +  ER   W+ G+R + +  L+  +   + E  ++ I    +T    + 
Sbjct: 170 DVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLANQLEPMTERQVMGINSLQQTSQQAED 229

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADD 184
           + SQ   +  LQ +++ +  +     S   D  +  +G  + ++ + +  L   +++AD+
Sbjct: 230 ALSQG--MESLQ-QSLADTLSSGTLGSSSSDNVASYMGQMAMAMGQ-LGTLEGFIRQADN 285

Query: 185 LRLRTVRRVVDLLTTQQAVEFLIA 208
           LRL+T+++++ +LTT+Q+   L+A
Sbjct: 286 LRLQTLQQMLRVLTTRQSARALLA 309

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
224116986	232	predicted protein [Populus trichocarpa]	0.974	0.969	0.662	4e-83
449456699	232	PREDICTED: transcription factor TGA5-lik	0.969	0.965	0.660	3e-81
357452129	222	Transcription factor TGA5 [Medicago trun	0.952	0.990	0.616	2e-78
351722073	225	bZIP transcription factor bZIP132 [Glyci	0.930	0.955	0.615	1e-77
147811934	227	hypothetical protein VITISV_036367 [Viti	0.961	0.977	0.620	1e-75
225461648	227	PREDICTED: uncharacterized protein LOC10	0.961	0.977	0.620	2e-75
186510075	237	uncharacterized protein [Arabidopsis tha	0.965	0.940	0.590	7e-69
297830034	244	hypothetical protein ARALYDRAFT_341612 [	0.965	0.913	0.572	4e-67
145338516	244	uncharacterized protein [Arabidopsis tha	0.965	0.913	0.572	9e-67
359493772	231	PREDICTED: uncharacterized protein LOC10	0.956	0.956	0.569	3e-63

>gi|224116986|ref|XP_002331801.1| predicted protein [Populus trichocarpa] gi|222874497|gb|EEF11628.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/225 (66%), Positives = 178/225 (79%)

Query: 2   SSSSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAE 61
           S+SSF+ FY TWF+QLNQL++QL  A +PP++ D    L  L  K ++HY E+Y+VKS  
Sbjct: 3   STSSFTRFYDTWFDQLNQLLEQLRTAPKPPSSQDDRSHLSSLAQKIVSHYAEFYRVKSMA 62

Query: 62  AQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDL 121
            + DV +VF APWAS  ERSLHWIAGWRPTT+FHLVYTESS LFE HI DIL+G  TGDL
Sbjct: 63  IESDVLSVFTAPWASCFERSLHWIAGWRPTTLFHLVYTESSILFEFHIADILKGRSTGDL 122

Query: 122 GDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQK 181
           GDLSP+QFRRVSELQCETVKEENAIT ELSEWQD A+E++      + +K+  LVS+V+K
Sbjct: 123 GDLSPNQFRRVSELQCETVKEENAITGELSEWQDSANEVMLGSFTDLGDKVGRLVSVVKK 182

Query: 182 ADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRR 226
           ADDLRLRT++RVV+LLTTQQAVEFL+AA ELQFGV  WG   D R
Sbjct: 183 ADDLRLRTIKRVVELLTTQQAVEFLVAAGELQFGVYGWGRKLDHR 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456699|ref|XP_004146086.1| PREDICTED: transcription factor TGA5-like [Cucumis sativus] gi|449533979|ref|XP_004173947.1| PREDICTED: transcription factor TGA5-like [Cucumis sativus]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 184/227 (81%), Gaps = 3/227 (1%)

Query: 2   SSSSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAE 61
           S  +F+SFY+TWF+ L++LV QLS+ A+    ++     + LV   ++HY++YY+VKS  
Sbjct: 4   SGFNFTSFYATWFDHLHRLVDQLSSTAKD--NHNSSSAPDHLVQTVMSHYSDYYRVKSMA 61

Query: 62  AQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDL 121
           A+RD  +VF+APWA+SLERSLHWIAGWRPTT FHL+YTESS LFES I DILRGL TGDL
Sbjct: 62  AERDPLSVFSAPWATSLERSLHWIAGWRPTTTFHLIYTESSILFESRIFDILRGLHTGDL 121

Query: 122 GDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQK 181
           GDLSPSQ RRVSELQCETV+EENAIT+ELSEWQD  SEL+G     V  ++  LV+I++K
Sbjct: 122 GDLSPSQIRRVSELQCETVEEENAITEELSEWQDDVSELLG-TRTEVTGRVEGLVNIIKK 180

Query: 182 ADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRRG 228
           AD LRLRTV++VV+LLT +QAVEF IAAAELQFGVR WGLDQDR+RG
Sbjct: 181 ADALRLRTVQKVVELLTPKQAVEFFIAAAELQFGVRGWGLDQDRQRG 227

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452129|ref|XP_003596341.1| Transcription factor TGA5 [Medicago truncatula] gi|87241108|gb|ABD32966.1| tumor-related protein-like, putative [Medicago truncatula] gi|355485389|gb|AES66592.1| Transcription factor TGA5 [Medicago truncatula]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/227 (61%), Positives = 177/227 (77%), Gaps = 7/227 (3%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQ 63
           ++F+ FY +W  Q N L+ QL  +    T      D E+L+ K L+H+ +YY  KS  A+
Sbjct: 2   TNFAQFYESWHTQFNNLIHQLKLSTSTQT------DSEELIQKVLSHHQDYYNAKSMAAE 55

Query: 64  RDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGD 123
           +D  +V A+PWA++LERSLHWIAGWRPTT FHL+YTESS LFESHI+DILRG RTGDLGD
Sbjct: 56  KDPLHVLASPWATTLERSLHWIAGWRPTTAFHLIYTESSLLFESHIIDILRGFRTGDLGD 115

Query: 124 LSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAD 183
           LSP+QFRRVS+LQC+TVKEENAIT+ELSEWQD AS+++G   A +++KI  LVSI++KAD
Sbjct: 116 LSPNQFRRVSDLQCDTVKEENAITEELSEWQDSASDMMG-SEADINDKIERLVSIIKKAD 174

Query: 184 DLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRRGRF 230
           DLRLRT+R VV+ L+ QQAVEFLIA+AEL  G+R WGL+ DR R R 
Sbjct: 175 DLRLRTLRSVVEFLSPQQAVEFLIASAELVVGIRGWGLNHDRSRPRI 221

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722073|ref|NP_001237999.1| bZIP transcription factor bZIP132 [Glycine max] gi|113367226|gb|ABI34670.1| bZIP transcription factor bZIP132 [Glycine max]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 139/226 (61%), Positives = 176/226 (77%), Gaps = 11/226 (4%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQ 63
           ++F+ FY  WFE+L  L+QQL    R           E+++ K + H+  YY  KSA A+
Sbjct: 11  AAFADFYEQWFEELQSLMQQLRGEGRK----------EEVMEKVMWHHQNYYVAKSAAAE 60

Query: 64  RDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGD 123
           +D  NVF +PWA++LERSLHWI GWRPTT FHL+YTESS +FESHI+DIL+GLRTGDLGD
Sbjct: 61  KDPLNVFLSPWATTLERSLHWITGWRPTTAFHLIYTESSLMFESHIIDILQGLRTGDLGD 120

Query: 124 LSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAD 183
           LSPSQFRRVS++QC+TVKEENAIT+ELSEWQD  SE++G   A++++KI  LV I++KAD
Sbjct: 121 LSPSQFRRVSDIQCDTVKEENAITEELSEWQDSVSEMMGP-GANINDKIGRLVCIIKKAD 179

Query: 184 DLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRRGR 229
           DLRLRT+R VV LL+ QQA+EFLIA+AEL  G+R WGL+ DR RGR
Sbjct: 180 DLRLRTLRSVVGLLSPQQAIEFLIASAELLVGIRGWGLNHDRPRGR 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811934|emb|CAN72574.1| hypothetical protein VITISV_036367 [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/224 (62%), Positives = 175/224 (78%), Gaps = 2/224 (0%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           SF  FY++WF+ LN LV QL+ A +P T  D +  L +LV K ++HY++YY+ KS  AQ 
Sbjct: 2   SFHRFYASWFDHLNXLVHQLTLAPKPTTPQD-NPALLQLVQKVISHYSQYYRAKSVAAQN 60

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           D  ++FAAPW+SSLERSLHW+AGWRPT VFHL+YTE+S  FESHI DIL G+RTGDLGDL
Sbjct: 61  DAVSLFAAPWSSSLERSLHWVAGWRPTIVFHLIYTETSARFESHIADILHGVRTGDLGDL 120

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELV-GDCSASVDEKIRLLVSIVQKAD 183
           S +Q  RVSELQCETV+EEN IT EL++WQ+GA ELV      +V+EKI  L+S++ KAD
Sbjct: 121 STAQLHRVSELQCETVREENEITSELAKWQEGAVELVEAGGDGNVEEKIGGLMSVLVKAD 180

Query: 184 DLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
           +LR+RT+ RV ++LT QQAVEFLIAAAELQFGVR  GL+ D +R
Sbjct: 181 ELRMRTIWRVAEMLTPQQAVEFLIAAAELQFGVRVLGLNHDNQR 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461648|ref|XP_002283108.1| PREDICTED: uncharacterized protein LOC100245234 [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 139/224 (62%), Positives = 174/224 (77%), Gaps = 2/224 (0%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           SF  FY++WF+ LN LV QL+ A +P T  D    L +LV K ++HY++YY+ KS  AQ 
Sbjct: 2   SFHRFYASWFDHLNHLVHQLTLAPKPTTPQDN-PALLQLVQKVISHYSQYYRAKSVAAQN 60

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           D  ++FAAPW+SSLERSLHW+AGWRPT VFHL+YTE+S  FESHI DIL G+RTGDLGDL
Sbjct: 61  DAVSLFAAPWSSSLERSLHWVAGWRPTIVFHLIYTETSARFESHIADILHGVRTGDLGDL 120

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELV-GDCSASVDEKIRLLVSIVQKAD 183
           S +Q  RVSELQCETV+EEN IT EL++WQ+GA ELV      +V+EKI  L+S++ KAD
Sbjct: 121 STAQLHRVSELQCETVREENEITRELAKWQEGAVELVEAGGDGNVEEKIGGLMSVLVKAD 180

Query: 184 DLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
           +LR+RT+ RV ++LT QQAVEFLIAAAELQFGVR  GL+ D +R
Sbjct: 181 ELRMRTIWRVAEMLTPQQAVEFLIAAAELQFGVRVLGLNHDNQR 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186510075|ref|NP_001118628.1| uncharacterized protein [Arabidopsis thaliana] gi|67633634|gb|AAY78741.1| DNA-binding protein-related [Arabidopsis thaliana] gi|332642062|gb|AEE75583.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 134/227 (59%), Positives = 163/227 (71%), Gaps = 4/227 (1%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAA---RPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSA 60
           +SF  F  +W EQL   +  L +A    R   T D+ + L + V + + H+ EY++ K A
Sbjct: 8   ASFKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEER-LREAVDRVMEHFREYHRAKWA 66

Query: 61  EAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGD 120
              +DV  V A+PWAS+LERSL W+ GWRPTT+FHLVYTESS LFES IVDILRG RTGD
Sbjct: 67  ATDKDVIEVMASPWASALERSLQWVGGWRPTTLFHLVYTESSILFESRIVDILRGFRTGD 126

Query: 121 LGDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQ 180
           L DLSPSQFR VSELQCETVKEENAIT+ELSEWQD AS+LV   S+  D++IR L  IV 
Sbjct: 127 LSDLSPSQFRTVSELQCETVKEENAITEELSEWQDDASDLVMGTSSDPDQRIRRLAEIVH 186

Query: 181 KADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
           + DDLRLRT+ RVV++L+  Q  EFL+AAAEL+ GV  WG   DRRR
Sbjct: 187 RTDDLRLRTITRVVEVLSPLQQAEFLVAAAELRTGVAGWGTSHDRRR 233

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830034|ref|XP_002882899.1| hypothetical protein ARALYDRAFT_341612 [Arabidopsis lyrata subsp. lyrata] gi|297328739|gb|EFH59158.1| hypothetical protein ARALYDRAFT_341612 [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 162/234 (69%), Gaps = 11/234 (4%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAA---RPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSA 60
           +SF  F  +W +QL   +  L +     R   T D+ + L + V + + H+ EY++ K A
Sbjct: 8   TSFKKFQESWIDQLRNHLNHLRSVQNHHRNSATGDEER-LREAVERVMEHFREYHRAKWA 66

Query: 61  EAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGD 120
             ++DV  V A PWAS+LERSLHW+ GWRPTT+FHLVYTESS LFES IVDILRG RTGD
Sbjct: 67  TTEKDVIGVMATPWASALERSLHWVGGWRPTTLFHLVYTESSILFESRIVDILRGFRTGD 126

Query: 121 LGDLSPSQF-------RRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIR 173
           L DLSPSQF       R VSELQCETV EENAITDELSEWQD AS+LV   S+  +++IR
Sbjct: 127 LSDLSPSQFRVKFVKGRTVSELQCETVNEENAITDELSEWQDDASDLVMGTSSDPEQRIR 186

Query: 174 LLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
            L  IV + DDLRLRT+ RVV+LL+  Q  EFLIAAAEL+ GV  WG   DRRR
Sbjct: 187 RLAEIVHRTDDLRLRTITRVVELLSPLQQAEFLIAAAELRTGVAGWGTSHDRRR 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338516|ref|NP_188106.2| uncharacterized protein [Arabidopsis thaliana] gi|8777471|dbj|BAA97051.1| tumor-related protein-like [Arabidopsis thaliana] gi|91806429|gb|ABE65942.1| DNA-binding protein-like protein [Arabidopsis thaliana] gi|225898645|dbj|BAH30453.1| hypothetical protein [Arabidopsis thaliana] gi|332642061|gb|AEE75582.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 134/234 (57%), Positives = 163/234 (69%), Gaps = 11/234 (4%)

Query: 4   SSFSSFYSTWFEQLNQLVQQLSAAA---RPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSA 60
           +SF  F  +W EQL   +  L +A    R   T D+ + L + V + + H+ EY++ K A
Sbjct: 8   ASFKKFQQSWIEQLRNHLNHLRSAQNHHRNSATGDEER-LREAVDRVMEHFREYHRAKWA 66

Query: 61  EAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGD 120
              +DV  V A+PWAS+LERSL W+ GWRPTT+FHLVYTESS LFES IVDILRG RTGD
Sbjct: 67  ATDKDVIEVMASPWASALERSLQWVGGWRPTTLFHLVYTESSILFESRIVDILRGFRTGD 126

Query: 121 LGDLSPSQF-------RRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIR 173
           L DLSPSQF       R VSELQCETVKEENAIT+ELSEWQD AS+LV   S+  D++IR
Sbjct: 127 LSDLSPSQFRVPFVKGRTVSELQCETVKEENAITEELSEWQDDASDLVMGTSSDPDQRIR 186

Query: 174 LLVSIVQKADDLRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
            L  IV + DDLRLRT+ RVV++L+  Q  EFL+AAAEL+ GV  WG   DRRR
Sbjct: 187 RLAEIVHRTDDLRLRTITRVVEVLSPLQQAEFLVAAAELRTGVAGWGTSHDRRR 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493772|ref|XP_003634664.1| PREDICTED: uncharacterized protein LOC100854900 [Vitis vinifera]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 158/223 (70%), Gaps = 2/223 (0%)

Query: 5   SFSSFYSTWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQR 64
           SF SF   WF+ L+ L+QQL  A +  T  D+ + L  LV K  THY++YY+  S  A+ 
Sbjct: 2   SFESFNEAWFDHLHDLLQQLRLAPKA-TAPDRDRALLDLVHKVRTHYSQYYRAMSYTARH 60

Query: 65  DVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDILRGLRTGDLGDL 124
           DV ++FAAPW+SSLERSLHW+AGWRPT  FHL+YT SS LFE+HIVDILRG   GDLGDL
Sbjct: 61  DVVSLFAAPWSSSLERSLHWVAGWRPTIAFHLIYTHSSILFETHIVDILRGAHNGDLGDL 120

Query: 125 SPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADD 184
           SP+Q +RVSELQC+TV EEN IT ELSE  +  S LVG     V E +  L ++V++A++
Sbjct: 121 SPAQLQRVSELQCQTVGEENEITAELSECFNSVSGLVGAVFDPV-ENVERLRNVVERAEN 179

Query: 185 LRLRTVRRVVDLLTTQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
           LR RT+  VV++L  QQAVEFL+A  ELQF VR  GL  DR R
Sbjct: 180 LRFRTICSVVEILNPQQAVEFLVAVMELQFWVRGMGLCHDRVR 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2086400	244	AT3G14880 "AT3G14880" [Arabido	0.930	0.881	0.486	2.9e-48
TAIR|locus:2124117	232	AT4G18650 "AT4G18650" [Arabido	0.870	0.866	0.261	2.4e-12
TAIR|locus:2016620	225	ZW2 [Arabidopsis thaliana (tax	0.419	0.431	0.372	3.9e-12
TAIR|locus:2124152	235	AT4G18680 "AT4G18680" [Arabido	0.783	0.770	0.234	8.3e-10
TAIR|locus:2171820	368	TGA1 "AT5G65210" [Arabidopsis	0.805	0.505	0.226	9.8e-10
TAIR|locus:2030551	384	TGA3 "AT1G22070" [Arabidopsis	0.813	0.489	0.236	1.4e-09
TAIR|locus:2184078	364	TGA4 "AT5G10030" [Arabidopsis	0.796	0.505	0.228	2e-09
TAIR|locus:2029366	368	TGA7 "AT1G77920" [Arabidopsis	0.809	0.508	0.221	1.2e-08
TAIR|locus:2124157	282	AT4G18690 "AT4G18690" [Arabido	0.636	0.521	0.219	2e-08
TAIR|locus:2169409	330	OBF5 "AT5G06960" [Arabidopsis	0.419	0.293	0.29	3e-08

TAIR|locus:2086400 AT3G14880 "AT3G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 110/226 (48%), Positives = 134/226 (59%)

Query:    12 TWFEQLNQLVQQLSAAA---RPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFN 68
             +W EQL   +  L +A    R   T D+ + L + V + + H+ EY++ K A   +DV  
Sbjct:    16 SWIEQLRNHLNHLRSAQNHHRNSATGDEER-LREAVDRVMEHFREYHRAKWAATDKDVIE 74

Query:    69 VFAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIXXXXXXXXXXXXSPSQ 128
             V A+PWAS+LERSL W+ GWRPTT+FHLVYTESS LFES IVDI            SPSQ
Sbjct:    75 VMASPWASALERSLQWVGGWRPTTLFHLVYTESSILFESRIVDILRGFRTGDLSDLSPSQ 134

Query:   129 FR-------RVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQK 181
             FR        VSELQCETVKEENAIT+ELSEWQD AS+LV   S+  D++IR L  IV +
Sbjct:   135 FRVPFVKGRTVSELQCETVKEENAITEELSEWQDDASDLVMGTSSDPDQRIRRLAEIVHR 194

Query:   182 AXXXXXXXXXXXXXXXXXQQAVEFLIAAAELQFGVRKWGLDQDRRR 227
                                Q  EFL+AAAEL+ GV  WG   DRRR
Sbjct:   195 TDDLRLRTITRVVEVLSPLQQAEFLVAAAELRTGVAGWGTSHDRRR 240

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2124117 AT4G18650 "AT4G18650" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 56/214 (26%), Positives = 92/214 (42%)

Query:    12 TWFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFA 71
             +W  QL   + QL  A    T  +   +L  L++K  TH+  YY  K A  + DV   F 
Sbjct:    18 SWVIQLELYLHQLLIAHNNNTMSET--ELRHLISKLTTHHKAYYTAKWAAIREDVLAFFG 75

Query:    72 APWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIXXXXXXXXXXXXSPSQFRR 131
             + W + LE +  W+ GW+P+ VF +V      L +S +V +              ++F  
Sbjct:    76 SVWLNPLENACSWLTGWKPSMVFRMV----DRLRKSRVVLVEAQVKKLEELRVK-TKFDE 130

Query:   132 VSELQCETVKEENAITD-ELSEWQDGASELVGDCSASVDEKIR-L---LVSIVQKAXXXX 186
               +++ E  + + A+ D ++ E       + G+    V+  +R L   L  +V+ A    
Sbjct:   131 -QKIEREMERYQVAMADRKMVELARLGCHVGGESVMVVEAAVRGLSMGLEKMVKAADCVR 189

Query:   187 XXXXXXXXXXXXXQQAVEFLIAAAELQFGVRKWG 220
                           Q VEFL AAA  Q  +R+WG
Sbjct:   190 LKTLKGILDILTPPQCVEFLAAAATFQVQLRRWG 223

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016620 ZW2 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/102 (37%), Positives = 57/102 (55%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAE---AQRDVFNV 69
             W  +  Q VQQL+  A   T     ++ E LV+  L+HY +YY+ KS     A  D+++ 
Sbjct:    17 WLCRHRQFVQQLAHLADETTIVTPIEE-ESLVSNFLSHYLQYYEEKSVAMSVAGDDIYDF 75

Query:    70 FAAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVD 111
             F+ PW SS E+ + WI G++P  VF L+ T  + L  SH +D
Sbjct:    76 FSPPWLSSYEKLILWIGGFKPGMVFKLITTSVNDL-TSHQID 116

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2124152 AT4G18680 "AT4G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 46/196 (23%), Positives = 86/196 (43%)

Query:    40 LEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVY- 98
             LE LV K +  Y  Y   +S  + R   + FA  W + +E S+ W+ G RP++   L+Y 
Sbjct:    25 LEDLVGKIVNDYHTYAGKRSELSYRCCAHYFAPSWNTPIENSMLWMGGCRPSSFIRLIYA 84

Query:    99 ---TESSTLFESHIVDIXXXXXXXXXXXXSP---SQFRRVSELQCETVKEENAITDELSE 152
                +++ T    +++ I            S    +Q  ++++L  E +K+E+ IT   + 
Sbjct:    85 LCGSQAETQLSQYLLKIDDDFDINHGGFMSDLTATQLGKLNDLHLEVIKKEDKITKTSAN 144

Query:   153 WQDGASEL-VGD---CSASVDEKIRL----LVSIVQKAXXXXXXXXXXXXXXXXXQQAVE 204
             +QD  ++L + D      +V++ +      +  ++ +A                  QAVE
Sbjct:   145 FQDDVADLPIADVVHADVAVEDALDKHEEGMAVLLAEADKLRFETLRKIVDVVTPLQAVE 204

Query:   205 FLIAAAELQFGVRKWG 220
             FL+A   LQ  +   G
Sbjct:   205 FLLAGKRLQLSLHDRG 220

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171820 TGA1 "AT5G65210" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 9.8e-10, P = 9.8e-10
 Identities = 45/199 (22%), Positives = 86/199 (43%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAA 72
             W E+ N+ + +L         +    +L  LV   + HY E +++KS+ A+ DVF V + 
Sbjct:   163 WVEEQNRQICELRTVLHG---HINDIELRSLVENAMKHYFELFRMKSSAAKADVFFVMSG 219

Query:    73 PWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIXXXXXXXXXXXXSPSQFRRV 132
              W +S ER   WI G+RP+ +  ++      L +  ++D+            + +Q   +
Sbjct:   220 MWRTSAERFFLWIGGFRPSDLLKVLLPHFDVLTDQQLLDVCNLKQSCQQAEDALTQ--GM 277

Query:   133 SELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAXXXXXXXXXX 192
              +LQ       + + D ++  Q G    +   ++++D ++  LVS V +A          
Sbjct:   278 EKLQ-------HTLADCVAAGQLGEGSYIPQVNSAMD-RLEALVSFVNQADHLRHETLQQ 329

Query:   193 XXXXXXXQQAVEFLIAAAE 211
                    +QA   L+A  E
Sbjct:   330 MYRILTTRQAARGLLALGE 348

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 47/199 (23%), Positives = 88/199 (44%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAA 72
             W E+ N+ V ++  A +    +    +L+ LV   L HY   +++K+  A+ DVF + + 
Sbjct:   177 WLEEQNRRVSEIRTALQ---AHIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFLMSG 233

Query:    73 PWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIXXXXXXXXXXXXSPSQFRRV 132
              W +S ER   WI G+RP+ + ++V      L +  ++++            + SQ   +
Sbjct:   234 MWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQ--GL 291

Query:   133 SELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAXXXXXXXXXX 192
              +LQ + + E  AI  ++ E  +  + +     AS  E ++ L S V +A          
Sbjct:   292 DKLQ-QGLVESIAIQIKVVESVNHGAPM-----ASAMENLQALESFVNQADHLRQQTLQQ 345

Query:   193 XXXXXXXQQAVEFLIAAAE 211
                    +QA   L+A  E
Sbjct:   346 MSKILTTRQAARGLLALGE 364

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IPI

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 46/201 (22%), Positives = 87/201 (43%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLE--KLVAKTLTHYTEYYKVKSAEAQRDVFNVF 70
             W E+ N+ + +L         + Q  D+E   LV   + HY + +++KSA A+ DVF V 
Sbjct:   159 WVEEQNRQICELRTVL-----HGQVSDIELRSLVENAMKHYFQLFRMKSAAAKIDVFYVM 213

Query:    71 AAPWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIXXXXXXXXXXXXSPSQFR 130
             +  W +S ER   WI G+RP+ +  ++      L +  ++D+            + SQ  
Sbjct:   214 SGMWKTSAERFFLWIGGFRPSELLKVLLPHFDPLTDQQLLDVCNLRQSCQQAEDALSQ-- 271

Query:   131 RVSELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAXXXXXXXX 190
              + +LQ       + + + ++  + G    +   + ++ E++  LVS V +A        
Sbjct:   272 GMEKLQ-------HTLAESVAAGKLGEGSYIPQMTCAM-ERLEALVSFVNQADHLRHETL 323

Query:   191 XXXXXXXXXQQAVEFLIAAAE 211
                      +QA   L+A  E
Sbjct:   324 QQMHRILTTRQAARGLLALGE 344

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2029366 TGA7 "AT1G77920" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 44/199 (22%), Positives = 87/199 (43%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAA 72
             W ++ ++ V +L  A +   ++    +L+ LV   L HY   +++KS  A+ DVF + + 
Sbjct:   162 WLQEQSRRVSELRTALQ---SHISDIELKMLVESCLNHYANLFQMKSDAAKADVFYLISG 218

Query:    73 PWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDIXXXXXXXXXXXXSPSQFRRV 132
              W +S ER   WI G+RP+ + ++V      L +  I+++            + SQ   +
Sbjct:   219 MWRTSTERFFQWIGGFRPSELLNVVMPYLQPLTDQQILEVRNLQQSSQQAEDALSQ--GI 276

Query:   133 SELQCETVKEENAITDELSEWQDGASELVGDCSASVDEKIRLLVSIVQKAXXXXXXXXXX 192
              +LQ      E+ + D + E    ++      +A++ E ++ L   V +A          
Sbjct:   277 DKLQQSLA--ESIVIDAVIE----STHYPTHMAAAI-ENLQALEGFVNQADHLRQQTLQQ 329

Query:   193 XXXXXXXQQAVEFLIAAAE 211
                    +Q+   L+A  E
Sbjct:   330 MAKILTTRQSARGLLALGE 348

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2124157 AT4G18690 "AT4G18690" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 34/155 (21%), Positives = 74/155 (47%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAA 72
             W     + +  L  A     + + H+ LE+LV K +  + +Y + +S  ++R   + FA 
Sbjct:    21 WMSVQAKHIVDLKEALMSHRSKEDHK-LEELVGKIVNDFQKYTEKRSELSRRSCSSYFAP 79

Query:    73 PWASSLERSLHWIAGWRPTTVFHLVYT----ESSTLFESHIVDIXXXXXXXXXXXXSP-- 126
              W S LE  L W+ G RP++   ++Y+    ++ T    +++ I            S   
Sbjct:    80 SWNSPLENGLLWMGGCRPSSFIRVIYSLCGSQAETQLSQYLLKIDENVEVNHGGSMSDLN 139

Query:   127 -SQFRRVSELQCETVKEENAITDELSEWQDGASEL 160
              SQ  ++++L  + +++E+ IT + +  Q+  +++
Sbjct:   140 ASQLAKINDLHIKVIEKEDKITKKSANLQENVADM 174

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 29/100 (29%), Positives = 52/100 (52%)

Query:    13 WFEQLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAA 72
             W E  N+ +++LS+A     T     +L  +V   + HY E Y++K   A+ DVF++ + 
Sbjct:   121 WQEDKNRQMKELSSAIDSHAT---DSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLLSG 177

Query:    73 PWASSLERSLHWIAGWRPTTVFHLVYTESSTLFESHIVDI 112
              W +  ER   W+ G+R + +  L+ ++   L E   +DI
Sbjct:   178 MWKTPAERCFLWLGGFRSSELLKLIASQLEPLTEQQSLDI 217

GO:0003677 "DNA binding" evidence=ISS;IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_182000021 hypothetical protein (232 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam14144	79	pfam14144, DOG1, Seed dormancy control	1e-22

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score = 87.3 bits (217), Expect = 1e-22
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 16 QLNQLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWA 75
           L +L   L+A A          +L  LV K L HY EY+++KSA A+ DVF++ +  W 
Sbjct: 2  LLAELRAALNAHASD-------DELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWK 54

Query: 76 SSLERSLHWIAGWRPTTVFHLVYT 99
          +  ER   WI G+RP+ +  L+Y+
Sbjct: 55 TPAERCFLWIGGFRPSELLKLLYS 78

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PF14144	80	DOG1: Seed dormancy control	100.0
PF13801	125	Metal_resist: Heavy-metal resistance; PDB: 3EPV_C	97.19
PRK12750	170	cpxP periplasmic repressor CpxP; Reviewed	96.67
COG3678	160	CpxP P pilus assembly/Cpx signaling pathway, perip	96.55
PRK10455	161	periplasmic protein; Reviewed	95.37
PF07813	100	LTXXQ: LTXXQ motif family protein; InterPro: IPR01	94.98
PRK12751	162	cpxP periplasmic stress adaptor protein CpxP; Revi	94.93
PRK10363	166	cpxP periplasmic repressor CpxP; Reviewed	94.91

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=1.4e-36  Score=227.00  Aligned_cols=80  Identities=44%  Similarity=0.926  Sum_probs=75.0

Q ss_pred             HHHHHHHHhcCCCCCCCChHhHHHHHHHHHHhHHHHHHHHHhhhhcchhhhccCCCCchHHHHHHHhcCCchhHHHHHHH
Q 040790           19 QLVQQLSAAARPPTTYDQHQDLEKLVAKTLTHYTEYYKVKSAEAQRDVFNVFAAPWASSLERSLHWIAGWRPTTVFHLVY   98 (231)
Q Consensus        19 ~~l~eLr~al~~~~~~~sd~~L~~lV~~~~~Hy~~y~~~K~~aA~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~l~Ll~   98 (231)
                      ++++|||++++++  ..+|++|+.+|++|++||++||++|+.||++|||++|+|+|+||+||||+||||||||++|+|||
T Consensus         1 ~~l~eLr~al~~~--~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~   78 (80)
T PF14144_consen    1 RQLNELRAALQSH--ADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLY   78 (80)
T ss_pred             CcHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHh
Confidence            4789999999833  34799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q 040790           99 TE  100 (231)
Q Consensus        99 s~  100 (231)
                      |+
T Consensus        79 s~   80 (80)
T PF14144_consen   79 SQ   80 (80)
T ss_pred             cC
Confidence            74

>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H

Probab=97.19  E-value=0.006  Score=46.39  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=70.0

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcCCC---chhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDC---SASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTT  199 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g~~---~~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp  199 (231)
                      +||++|..+|..+......+-..+-+.+......+...+...   ...+...++.+...-.+....|.+++.++..+|||
T Consensus        41 ~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~Ltp  120 (125)
T PF13801_consen   41 NLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTP  120 (125)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-G
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            599999999999999999999999999999999998888433   23467788888999999999999999999999999


Q ss_pred             HHHH
Q 040790          200 QQAV  203 (231)
Q Consensus       200 ~Qaa  203 (231)
                      .|=+
T Consensus       121 eQR~  124 (125)
T PF13801_consen  121 EQRA  124 (125)
T ss_dssp             GGHH
T ss_pred             HHhC
Confidence            9855

>PRK12750 cpxP periplasmic repressor CpxP; Reviewed

Probab=96.67  E-value=0.081  Score=44.85  Aligned_cols=98  Identities=16%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHH--------HHHHHHHHHhhhhhhcCC--Cchh-HHHHHHHHHHHHHHHhHHHHHHHH
Q 040790          123 DLSPSQFRRVSELQCETVKEENA--------ITDELSEWQDGASELVGD--CSAS-VDEKIRLLVSIVQKADDLRLRTVR  191 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~a--------Ls~~ma~lQ~slad~~g~--~~~~-~~~kl~~L~~~l~~AD~LR~~TL~  191 (231)
                      +||++|...|..++...+.+=.+        ..+.|....+.+.+.+.+  .+.+ +.+-.+.+...-.+.---|.++.+
T Consensus        52 ~LTdeQk~qik~i~~~~r~~~k~~~~~~r~~~~~~m~a~~~~~~~Ll~a~~FDeaavral~~~~~~~~~e~~v~~~~~~~  131 (170)
T PRK12750         52 DLTDAQKEQLKEMREANRAEMKAKYSGNREQSHAEMKAHHAKVQALVLADDFDEAAANDLAKQMVEKQVERRVKMLEKRH  131 (170)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999998777764333        345555555555555532  2222 223223333332333334677899


Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHhhcc
Q 040790          192 RVVDLLTTQQAVEFLIAAAELQFGVRKWG  220 (231)
Q Consensus       192 ~~~~iLtp~Qaa~fL~A~~e~~~~lr~~g  220 (231)
                      ++..||||-|=+.|-.-..+.....++-+
T Consensus       132 ~~~~vLTpEQRak~~e~~~~r~~~~~~~~  160 (170)
T PRK12750        132 QMLSILTPEQKAKFQELQQERMQECQDKM  160 (170)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888666655555544

>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]

Probab=96.55  E-value=0.044  Score=46.11  Aligned_cols=85  Identities=19%  Similarity=0.236  Sum_probs=62.3

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcCC---CchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGD---CSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTT  199 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g~---~~~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp  199 (231)
                      +||++|..+|.++...-+   .+..+-+..-..++-+.+.+   +...+....+.++..-.+.+.+|.++-.++..||||
T Consensus        57 ~lT~~Qrqqi~~i~~~~~---~a~~~~~~~~r~~l~~li~a~~~D~aka~a~~~~m~~~~~~~~~~r~k~~~~m~~vLTP  133 (160)
T COG3678          57 DLTRAQRQQIRDLMQAQR---RAQREQLRSKRRALHELIAADQFDEAKARAQAEKMENQRQALRELRVKSDNQMYQVLTP  133 (160)
T ss_pred             cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            599999999999887766   33333333344444444422   223567888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 040790          200 QQAVEFLIAAA  210 (231)
Q Consensus       200 ~Qaa~fL~A~~  210 (231)
                      .|.+.|=--.+
T Consensus       134 EQr~~l~~~~~  144 (160)
T COG3678         134 EQRAKLQELLA  144 (160)
T ss_pred             HHHHHHHHHHH
Confidence            99977654433

>PRK10455 periplasmic protein; Reviewed

Probab=95.37  E-value=0.24  Score=41.66  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhcCCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAIT-DELSEWQDGASELVGDCS-ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQ  200 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~g~~~-~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~  200 (231)
                      +||++|..+|..|.+..+..-...+ ++...++.-++.  +..+ ..+...++.+...-.+.-..|.++-.+|..||||-
T Consensus        56 ~LT~~Qrqqir~im~~~r~~~~~~~~~~r~~l~~li~a--d~FDeaavra~~~k~~~~~~~~~~~~~~~~~qiy~vLTPE  133 (161)
T PRK10455         56 NLTDAQKQQIRDIMKAQRDQMKRPPLEERRAMHDIIAS--DTFDKAKAEAQITKMEAQRKARMLAHMETQNKIYNVLTPE  133 (161)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHcc--CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            4999999999999877666533332 333444432211  1122 23555566666666666667889999999999999


Q ss_pred             HHHHHHH
Q 040790          201 QAVEFLI  207 (231)
Q Consensus       201 Qaa~fL~  207 (231)
                      |-+.|=.
T Consensus       134 Qr~q~~~  140 (161)
T PRK10455        134 QKKQFNA  140 (161)
T ss_pred             HHHHHHH
Confidence            9998764

>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT)

Probab=94.98  E-value=0.15  Score=37.88  Aligned_cols=78  Identities=13%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHhhhhhhcCCCchhHHHHH--HHHHHHHHHHhHHHHHHHHHHhhhc
Q 040790          123 DLSPSQFRRVSELQCETVKEENAI---TDELSEWQDGASELVGDCSASVDEKI--RLLVSIVQKADDLRLRTVRRVVDLL  197 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aL---s~~ma~lQ~slad~~g~~~~~~~~kl--~~L~~~l~~AD~LR~~TL~~~~~iL  197 (231)
                      +||++|...+..|....+..-..+   .+.+.++.+     .......+....  +.+...-.+.-..|..+...+..||
T Consensus        14 ~LT~eQ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL   88 (100)
T PF07813_consen   14 NLTDEQKAKWRAIRQAMKAKMKPLKAMREQLRALRD-----PSFDEAAPEALAAMAEMMELRAEMMEERAKAQHALYAVL   88 (100)
T ss_dssp             --THHHHHHHHHHHHHHCTTS------HHHHHHHHH-----SS--HHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHhcc-----ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            399999999999998888777776   233333323     111112222222  5666666666677889999999999


Q ss_pred             CHHHHHHH
Q 040790          198 TTQQAVEF  205 (231)
Q Consensus       198 tp~Qaa~f  205 (231)
                      ||-|=+.|
T Consensus        89 t~eQk~~~   96 (100)
T PF07813_consen   89 TPEQKEKF   96 (100)
T ss_dssp             -HHHHHHH
T ss_pred             CHHHHHHH
Confidence            99998776

This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.

>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed

Probab=94.93  E-value=0.66  Score=39.14  Aligned_cols=94  Identities=11%  Similarity=0.057  Sum_probs=62.6

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhhhhhcCCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHH
Q 040790          123 DLSPSQFRRVSELQCETVKEEN-AITDELSEWQDGASELVGDCS-ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQ  200 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~-aLs~~ma~lQ~slad~~g~~~-~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~  200 (231)
                      +||++|...|-.+....+.... .--.+++.++..+..-  +.+ ..+.+.++.+...-..----+.++..++..+|||-
T Consensus        56 ~LTd~QR~qmr~im~~~r~~~~~~~~~~~~~m~~Li~Ad--~FDeaAvra~~~kma~~~~e~~v~~~~~~~qmy~lLTPE  133 (162)
T PRK12751         56 NLTEQQRQQMRDLMRQSHQSQPRLDLEDREAMHKLITAD--KFDEAAVRAQAEKMSQNQIERHVEMAKVRNQMYNLLTPE  133 (162)
T ss_pred             CCCHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            4999999999999888776532 1122444444433332  222 33555566665555555557788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 040790          201 QAVEFLIAAAELQFGVRK  218 (231)
Q Consensus       201 Qaa~fL~A~~e~~~~lr~  218 (231)
                      |-+.|---.-+-...+++
T Consensus       134 Qra~l~~~~e~r~~~~~~  151 (162)
T PRK12751        134 QKEALNKKHQERIEKLQQ  151 (162)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999997766666655555

>PRK10363 cpxP periplasmic repressor CpxP; Reviewed

Probab=94.91  E-value=0.24  Score=42.00  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=54.4

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhcCCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAIT-DELSEWQDGASELVGDCS-ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQ  200 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~g~~~-~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~  200 (231)
                      +||++|...|.+|.+.-+.+.+.++ .+++.++.-+..-  ..+ ..+...++.+...=.+.-=-|.++-++|..||||-
T Consensus        50 dLTdaQRqQmRdLm~~~r~~~~~~~~~er~amh~LI~ad--~FDEaavra~a~kma~~~~e~~Vem~k~~nqmy~lLTPE  127 (166)
T PRK10363         50 SLTEHQRQQMRDLMQQARHEQPPVNVSEMETMHRLVTAE--NFDENAVRAQAEKMAQEQVARQVEMAKVRNQMYRLLTPE  127 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            4999999999999988887655443 2455554222211  122 33445555554444444445778899999999999


Q ss_pred             HHHHHHH
Q 040790          201 QAVEFLI  207 (231)
Q Consensus       201 Qaa~fL~  207 (231)
                      |-+.|=-
T Consensus       128 QKaq~~~  134 (166)
T PRK10363        128 QQAVLNE  134 (166)
T ss_pred             HHHHHHH
Confidence            9999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2y39_A	118	Nickel and cobalt resistance protein CNRR; metal b	97.35
3itf_A	145	Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxr	96.25
3o39_A	108	Periplasmic protein related to spheroblast format;	94.7
3oeo_A	138	Spheroplast protein Y; LTXXQ, extracytoplasmic str	93.87
3lay_A	175	Zinc resistance-associated protein; salmonella typ	91.75

>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*

Probab=97.35  E-value=0.0032  Score=49.40  Aligned_cols=86  Identities=13%  Similarity=0.093  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcC---CCchhHHHHHHHHHHHHHHHhHHHHHH---HHHHhhh
Q 040790          123 DLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVG---DCSASVDEKIRLLVSIVQKADDLRLRT---VRRVVDL  196 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g---~~~~~~~~kl~~L~~~l~~AD~LR~~T---L~~~~~i  196 (231)
                      +||++|-..|+.++..-.....+|..+|...-..+++.+.   +-+..+..++.....   ..-.|+..|   +-.|..|
T Consensus        20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~---~mG~LQkeTi~HvfeMR~V   96 (118)
T 2y39_A           20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVER---AAGDLQRATLVHVFEMRAG   96 (118)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence            5999999999999999999999999999999999998862   123566666666655   344588889   7777899


Q ss_pred             cCHHHHHHHHHHHHH
Q 040790          197 LTTQQAVEFLIAAAE  211 (231)
Q Consensus       197 Ltp~Qaa~fL~A~~e  211 (231)
                      |||-|+..|=-.+.+
T Consensus        97 LtPeQ~~~fd~~vv~  111 (118)
T 2y39_A           97 LKPEHRPAYDRVLID  111 (118)
T ss_dssp             SCGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999766554

>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A

Probab=96.25  E-value=0.018  Score=46.50  Aligned_cols=88  Identities=13%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhcCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHHH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAIT-DELSEWQDGASELVGDCSASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQQ  201 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~g~~~~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~Q  201 (231)
                      +||++|..+|..|....+.+...++ +.+..++.-+... ....+.+.+.++.+...-.+.--.|.++-.+|..||||-|
T Consensus        45 ~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad-~fDeaa~ral~~~~~~~~~e~~v~r~k~~~qiy~vLTPEQ  123 (145)
T 3itf_A           45 SLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAE-NFDENAVRAQAEKMANEQIARQVEMAKVRNQMYRLLTPEQ  123 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence            4999999999999988887655442 2233333211111 1112446677777777777777789999999999999999


Q ss_pred             HHHHHHHHHH
Q 040790          202 AVEFLIAAAE  211 (231)
Q Consensus       202 aa~fL~A~~e  211 (231)
                      -+.|-.-..+
T Consensus       124 k~ql~e~~~~  133 (145)
T 3itf_A          124 QAVLNEKHQQ  133 (145)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998664433

>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}

Probab=94.70  E-value=0.04  Score=42.34  Aligned_cols=82  Identities=15%  Similarity=0.177  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhcCCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCHH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAIT-DELSEWQDGASELVGDCS-ASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTTQ  200 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs-~~ma~lQ~slad~~g~~~-~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp~  200 (231)
                      +||++|...|-.|....+.+-+..+ .....++.-+..  +..+ ..+..-++.+...-.+.---|.++=.+|..||||-
T Consensus        17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~a--d~FDEaaar~l~~~~~~~~~e~~v~~~r~~~qmy~lLTPE   94 (108)
T 3o39_A           17 NLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIAS--DTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPE   94 (108)
T ss_dssp             CCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHSS--SSCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            4999999999999887766533221 222333321111  1112 33555556555555555567788999999999999


Q ss_pred             HHHHHH
Q 040790          201 QAVEFL  206 (231)
Q Consensus       201 Qaa~fL  206 (231)
                      |-+.|-
T Consensus        95 Qk~q~~  100 (108)
T 3o39_A           95 QKKQFN  100 (108)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}

Probab=93.87  E-value=0.025  Score=45.06  Aligned_cols=86  Identities=12%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcCCC---chhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhcCH
Q 040790          123 DLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDC---SASVDEKIRLLVSIVQKADDLRLRTVRRVVDLLTT  199 (231)
Q Consensus       123 ~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g~~---~~~~~~kl~~L~~~l~~AD~LR~~TL~~~~~iLtp  199 (231)
                      +||++|..+|..|....+..-...   +....+.+.+.+.++   ...+...++.+...-.+.--.|.++..+|..||||
T Consensus        33 ~LT~eQ~~qir~i~~~~r~~~~~~---~~~~r~~l~~Li~a~~fDeaav~al~~~~~~~~~e~~~~~~~~~~~~~~vLTP  109 (138)
T 3oeo_A           33 NLTDAQKQQIREIMKGQRDQMKRP---PLEERRAMHDIITSDTFDKVKAEAQIAKMEEQRKANMLAHMETQNKIYNILTP  109 (138)
T ss_dssp             CCCTTHHHHHHHHHHHHSSSSCCC---CTTHHHHHHHHHTCSSCCHHHHHHHHGGGSHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            499999999999988776543211   111122222222221   23456666666666777777889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040790          200 QQAVEFLIAAAE  211 (231)
Q Consensus       200 ~Qaa~fL~A~~e  211 (231)
                      -|-+.|---..+
T Consensus       110 EQr~q~~~~~~k  121 (138)
T 3oeo_A          110 EQKKQFNANFEK  121 (138)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHH
Confidence            999998765544

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=91.75  E-value=1.6  Score=36.11  Aligned_cols=72  Identities=17%  Similarity=0.186  Sum_probs=50.4

Q ss_pred             CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhcCCCc---hhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040790          122 GDLSPSQFRRVSELQCETVKEENAITDELSEWQDGASELVGDCS---ASVDEKIRLLVSIVQKADDLRLRTVRRV  193 (231)
Q Consensus       122 ~~Ls~~Ql~~i~~Lq~~t~~~E~aLs~~ma~lQ~slad~~g~~~---~~~~~kl~~L~~~l~~AD~LR~~TL~~~  193 (231)
                      -+||++|..++..|+++.+.+-.+|.+.|...++.+.+.+..++   ..+......+..+=.+-...|.+.-.++
T Consensus        66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em  140 (175)
T 3lay_A           66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM  140 (175)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999999888888877763222   2344444455555445555566555555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00