Citrus Sinensis ID: 040839

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLLK
Secondary Structure (PSIPRED)
cHHHHHHccccEEEEcccccccccccccccccccccEEEccccccccccEEEcccccccccccEEEEcccccccccccEEccEEEEcccEEEEEEEEccccHHHHccccccccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHccccEEEEEccccccccccccccHHHHHHHHHHcccccccccEEEEEcccccccccHEEEcHHHcccccccccccEEEEcccEEEEEEEEccccHHHHccccccccccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MGLIGEKLEIDFVIStgdnfyedgltgeddpafldsftsiytapslqKQWYNVlgnhdyrgdveaqlspvltrkdsrwlcsRSFILDAEIAefvfvdttpfvdeyfqdpgdstydwrgvYQRKEYLSDLLK
Flexible Loop (DISEMBL)
MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLspvltrkdsrWLCSRSFILDAEIAEFVFVDTTPFVDEYfqdpgdstydwrgVYQRKEYLSDLLK
Low Complexity Region (SEG)
MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLLK
Disordered region (IsUnstruct)
***IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYL*****
Disordered Region (DISOPRED)
*******LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLL*
Disordered Region (DISEMBL)
MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLLK
Disordered Region (DISPRO)
*GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q8H129	366	Purple acid phosphatase 3	yes	no	1.0	0.357	0.694	6e-50
Q8VYU7	339	Purple acid phosphatase 4	no	no	0.992	0.383	0.684	6e-49
Q8S341	328	Purple acid phosphatase 7	no	no	0.992	0.396	0.661	8e-49
Q9SCX8	338	Purple acid phosphatase 1	no	no	1.0	0.387	0.641	1e-46
Q8VYZ2	335	Purple acid phosphatase 8	no	no	0.992	0.388	0.646	3e-45
P09889	340	Tartrate-resistant acid p	yes	no	0.541	0.208	0.364	9e-08
O97860	325	Tartrate-resistant acid p	yes	no	0.580	0.233	0.354	1e-07
P13686	325	Tartrate-resistant acid p	yes	no	0.526	0.212	0.388	2e-07
P29288	327	Tartrate-resistant acid p	yes	no	0.526	0.211	0.347	9e-07
Q05117	327	Tartrate-resistant acid p	yes	no	0.541	0.217	0.337	1e-06

>sp|Q8H129|PPA3_ARATH Purple acid phosphatase 3 OS=Arabidopsis thaliana GN=PAP3 PE=2 SV=1

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/131 (69%), Positives = 106/131 (80%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG IGEKL+IDFVISTGDNFY++GLT   DP F DSFT+IYTAPSLQK WY+VLGNHDYR
Sbjct: 97  MGEIGEKLDIDFVISTGDNFYDNGLTSLHDPLFQDSFTNIYTAPSLQKPWYSVLGNHDYR 156

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDV AQLSP+L   D+RW+C RSFI++AEI +  FVDTTPFVD+YF  P    YDW GV 
Sbjct: 157 GDVRAQLSPMLRALDNRWVCMRSFIVNAEIVDLFFVDTTPFVDKYFIQPNKHVYDWSGVL 216

Query: 121 QRKEYLSDLLK 131
            R+ YL++LLK
Sbjct: 217 PRQTYLNNLLK 227

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 2

>sp|Q8VYU7|PPA4_ARATH Purple acid phosphatase 4 OS=Arabidopsis thaliana GN=PAP4 PE=2 SV=1

 Score =  192 bits (487), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 104/130 (80%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG IGE+++I+FV+STGDN Y++G+   DDPAF  SF++IYT+PSLQK WY VLGNHDYR
Sbjct: 69  MGRIGEEMDINFVVSTGDNIYDNGMKSIDDPAFQLSFSNIYTSPSLQKPWYLVLGNHDYR 128

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSP+L   DSRW+C RSFI+DAEIAE  FVDTTPFVD YF  P D TYDW GV 
Sbjct: 129 GDVEAQLSPILRSMDSRWICMRSFIVDAEIAELFFVDTTPFVDAYFLSPQDQTYDWSGVS 188

Query: 121 QRKEYLSDLL 130
            RK YL  +L
Sbjct: 189 PRKSYLQTIL 198

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q8S341|PPA7_ARATH Purple acid phosphatase 7 OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1

 Score =  191 bits (486), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 106/130 (81%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDFVIS GDNFY+DGL G +DP+F  SF+ IYT PSLQKQWY+VLGNHDYR
Sbjct: 64  MGVVGEKLDIDFVISVGDNFYDDGLKGVNDPSFEASFSHIYTHPSLQKQWYSVLGNHDYR 123

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           G+VEAQLS VLT+KD RW C RSF+L + + +F F DT PFV++YF +P D TYDWR V 
Sbjct: 124 GNVEAQLSKVLTQKDWRWFCRRSFVLSSGMVDFFFADTNPFVEKYFTEPEDHTYDWRNVL 183

Query: 121 QRKEYLSDLL 130
            R +Y+S+LL
Sbjct: 184 PRNKYISNLL 193

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9SCX8|PPA17_ARATH Purple acid phosphatase 17 OS=Arabidopsis thaliana GN=PAP17 PE=2 SV=1

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 102/131 (77%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG IGEK+++DFV+STGDNFY++GL  E DP F  SF++IYTAPSLQKQWY+VLGNHDYR
Sbjct: 69  MGKIGEKIDLDFVVSTGDNFYDNGLFSEHDPNFEQSFSNIYTAPSLQKQWYSVLGNHDYR 128

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GD EAQLS VL   DSRW+C RSF++DAE+ E  FVDTTPFV EY+ +    +YDWR V 
Sbjct: 129 GDAEAQLSSVLREIDSRWICLRSFVVDAELVEMFFVDTTPFVKEYYTEADGHSYDWRAVP 188

Query: 121 QRKEYLSDLLK 131
            R  Y+  LL+
Sbjct: 189 SRNSYVKALLR 199

Metallo-phosphoesterase involved in phosphate metabolism. Has a peroxidase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q8VYZ2|PPA8_ARATH Purple acid phosphatase 8 OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 100/130 (76%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG IG+ L IDF+ISTGDNFY+DG+    D  F DSFT+IYTA SLQK WYNVLGNHDYR
Sbjct: 68  MGKIGKDLNIDFLISTGDNFYDDGIISPYDSQFQDSFTNIYTATSLQKPWYNVLGNHDYR 127

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           G+V AQLSP+L   D RW+C RS++++AEI +  FVDTTPFVD YF +P D  YDWRGV 
Sbjct: 128 GNVYAQLSPILRDLDCRWICLRSYVVNAEIVDIFFVDTTPFVDRYFDEPKDHVYDWRGVL 187

Query: 121 QRKEYLSDLL 130
            R +YL+ LL
Sbjct: 188 PRNKYLNSLL 197

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|P09889|PPA5_PIG Tartrate-resistant acid phosphatase type 5 OS=Sus scrofa GN=ACP5 PE=1 SV=4

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVE 64
           + L  DF++S GDNFY  G+    D  F ++F  +++ PSL+   W+ + GNHD+ G+V 
Sbjct: 67  KTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVS 126

Query: 65  AQLSPVLTRKDSRW 78
           AQ++   ++   RW
Sbjct: 127 AQIA--YSKISKRW 138

Uteroferrin is a phosphoprotein phosphatase, synthesized in response to progesterone. It appears to function in transplacental transport of iron in pig.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|O97860|PPA5_RABIT Tartrate-resistant acid phosphatase type 5 OS=Oryctolagus cuniculus GN=ACP5 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDY 59
           +G + + L   F++S GDNFY  G+    D  F ++F  +++  SLQ   WY + GNHD+
Sbjct: 54  IGKVVQMLGAHFILSLGDNFYFSGVQSVSDKRFQETFEDVFSDRSLQNVPWYVLAGNHDH 113

Query: 60  RGDVEAQLSPVLTRKDSRW 78
            G+V AQ++   ++   RW
Sbjct: 114 IGNVSAQIA--YSKVSKRW 130

Oryctolagus cuniculus (taxid: 9986)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|P13686|PPA5_HUMAN Tartrate-resistant acid phosphatase type 5 OS=Homo sapiens GN=ACP5 PE=1 SV=3

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           L  DF++S GDNFY  G+   +D  F ++F  +++  SL+K  WY + GNHD+ G+V AQ
Sbjct: 61  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 120

Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 121 IA--YSKISKRW 130

Involved in osteopontin/bone sialoprotein dephosphorylation. Its expression seems to increase in certain pathological states such as Gaucher and Hodgkin diseases, the hairy cell, the B-cell, and the T-cell leukemias.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|P29288|PPA5_RAT Tartrate-resistant acid phosphatase type 5 OS=Rattus norvegicus GN=Acp5 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           +  DF++S GDNFY  G+   +D  F ++F  +++  +L+   WY + GNHD+ G+V AQ
Sbjct: 63  MGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQ 122

Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 123 IA--YSKISKRW 132

May play a role in the process of bone resorption. The osteoclastic trap acts on nucleotide tri- and diphosphates with higher affinity, compared with other substrates.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q05117|PPA5_MOUSE Tartrate-resistant acid phosphatase type 5 OS=Mus musculus GN=Acp5 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVE 64
           + +  DF++S GDNFY  G+    D  F ++F  +++  +L+   WY + GNHD+ G+V 
Sbjct: 61  QTMGADFIMSLGDNFYFTGVHDASDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVS 120

Query: 65  AQLSPVLTRKDSRW 78
           AQ++   ++   RW
Sbjct: 121 AQIA--YSKISKRW 132

May play a role in the process of bone resorption. The osteoclastic trap acts on nucleotide tri- and diphosphates with higher affinity, compared with other substrates.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
356525044	335	PREDICTED: purple acid phosphatase 8-lik	1.0	0.391	0.770	8e-55
359806222	335	uncharacterized protein LOC100818610 pre	1.0	0.391	0.770	2e-54
255645604	335	unknown [Glycine max]	1.0	0.391	0.755	6e-54
225734528	330	purple acid phosphatase 3 [Phaseolus vul	0.992	0.393	0.784	1e-53
224144254	258	predicted protein [Populus trichocarpa]	1.0	0.507	0.740	2e-53
224101935	325	predicted protein [Populus trichocarpa]	1.0	0.403	0.740	3e-53
358343459	337	Purple acid phosphatase [Medicago trunca	1.0	0.388	0.748	2e-52
449504800	536	PREDICTED: purple acid phosphatase 17-li	1.0	0.244	0.709	3e-52
47716659	328	purple acid phosphatase 1 [Solanum tuber	1.0	0.399	0.717	5e-52
225424458	324	PREDICTED: purple acid phosphatase 3 iso	1.0	0.404	0.725	2e-51

>gi|356525044|ref|XP_003531137.1| PREDICTED: purple acid phosphatase 8-like [Glycine max]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 110/131 (83%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDFVISTGDNFYEDGL G DDPAF  SF  +YTAPSLQK WY VLGNHDYR
Sbjct: 67  MGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFIHMYTAPSLQKTWYTVLGNHDYR 126

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSP+L +KDSRWLC RSFILD EI EF FVDTTPFV+EYF DPG+ TYDW GV 
Sbjct: 127 GDVEAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVL 186

Query: 121 QRKEYLSDLLK 131
            R  Y+S LLK
Sbjct: 187 PRLAYVSKLLK 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806222|ref|NP_001241208.1| uncharacterized protein LOC100818610 precursor [Glycine max] gi|255646028|gb|ACU23501.1| unknown [Glycine max]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 110/131 (83%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDFVISTGDNFYEDGL G DDPAF  SF  +YTAPSLQK WY VLGNHDYR
Sbjct: 67  MGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYQSFVDMYTAPSLQKTWYTVLGNHDYR 126

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDV AQLSP+L +KDSRWLC RSFILD EI EF FVDTTPFV+EYF DPG+ TYDW GV 
Sbjct: 127 GDVGAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDTTPFVEEYFTDPGEHTYDWEGVL 186

Query: 121 QRKEYLSDLLK 131
            R  YLS+LLK
Sbjct: 187 PRLAYLSELLK 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645604|gb|ACU23296.1| unknown [Glycine max]

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 109/131 (83%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDFVISTGDNFYE+GL G DDPAF  SF  +YTAPSLQK WY VLGNHDYR
Sbjct: 67  MGIVGEKLDIDFVISTGDNFYENGLKGVDDPAFYQSFIHMYTAPSLQKTWYTVLGNHDYR 126

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSP+L +KDSRWLC RSFILD EI EF FVD TPFV+EYF DPG+ TYDW GV 
Sbjct: 127 GDVEAQLSPILKQKDSRWLCMRSFILDGEIVEFFFVDMTPFVEEYFTDPGEHTYDWEGVL 186

Query: 121 QRKEYLSDLLK 131
            R  Y+S LLK
Sbjct: 187 PRLAYVSKLLK 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225734528|gb|ACO25293.1| purple acid phosphatase 3 [Phaseolus vulgaris]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 108/130 (83%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDFVISTGDNFYEDGL G DDPAF  SF  IYTA SLQK WY+VLGNHDYR
Sbjct: 68  MGIVGEKLDIDFVISTGDNFYEDGLKGVDDPAFYSSFVDIYTAHSLQKTWYSVLGNHDYR 127

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSP L +KDSRWLC RSFILD EI EF FVDTTPFVDEYF DPG+ TYDW GV 
Sbjct: 128 GDVEAQLSPALKQKDSRWLCLRSFILDGEIVEFFFVDTTPFVDEYFVDPGEHTYDWEGVL 187

Query: 121 QRKEYLSDLL 130
            R  YLS LL
Sbjct: 188 PRMSYLSQLL 197

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144254|ref|XP_002336123.1| predicted protein [Populus trichocarpa] gi|222873355|gb|EEF10486.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 112/131 (85%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDF+ISTGDNFYE GL G DDPAF +SFT IYTAPSLQKQWYNVLGNHDYR
Sbjct: 62  MGIMGEKLDIDFIISTGDNFYEGGLNGVDDPAFYESFTRIYTAPSLQKQWYNVLGNHDYR 121

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSPVL   DS+WLC RSFI++ EIAEF FVDTTPFV++YF +P D  YDW G+ 
Sbjct: 122 GDVEAQLSPVLREMDSKWLCLRSFIVNTEIAEFFFVDTTPFVNKYFLEPKDHVYDWSGIL 181

Query: 121 QRKEYLSDLLK 131
            RK YLS++L+
Sbjct: 182 PRKSYLSNVLE 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101935|ref|XP_002312482.1| predicted protein [Populus trichocarpa] gi|222852302|gb|EEE89849.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 112/131 (85%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL+IDF+ISTGDNFYE GL G DDPAF +SFT IYTAPSLQKQWYNVLGNHDYR
Sbjct: 58  MGIMGEKLDIDFIISTGDNFYEGGLNGVDDPAFYESFTRIYTAPSLQKQWYNVLGNHDYR 117

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSPVL   DS+WLC RSFI++ EIAEF FVDTTPFV++YF +P D  YDW G+ 
Sbjct: 118 GDVEAQLSPVLREMDSKWLCLRSFIVNTEIAEFFFVDTTPFVNKYFLEPKDHVYDWSGIL 177

Query: 121 QRKEYLSDLLK 131
            RK YLS++L+
Sbjct: 178 PRKSYLSNVLE 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343459|ref|XP_003635819.1| Purple acid phosphatase [Medicago truncatula] gi|355501754|gb|AES82957.1| Purple acid phosphatase [Medicago truncatula]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 109/131 (83%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG++GEKL IDFVISTGDNFYEDGL G DDPAF +SF +IYTAPSLQK WYNVLGNHDYR
Sbjct: 71  MGIVGEKLNIDFVISTGDNFYEDGLKGVDDPAFYESFANIYTAPSLQKVWYNVLGNHDYR 130

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSP+L  KDSRW+C RSFILD  I EF FVDTTPFV++YF DP + TYDW GV 
Sbjct: 131 GDVEAQLSPILRLKDSRWVCLRSFILDGGIVEFFFVDTTPFVEKYFTDPEEHTYDWNGVL 190

Query: 121 QRKEYLSDLLK 131
            R+ Y + LLK
Sbjct: 191 PRESYRAKLLK 201

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504800|ref|XP_004162298.1| PREDICTED: purple acid phosphatase 17-like [Cucumis sativus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 112/131 (85%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG+IGEKLE+DFVISTGDNFY+ GL G +DP F +SF+ IYTAPSLQK+WY+VLGNHDYR
Sbjct: 269 MGIIGEKLEVDFVISTGDNFYDRGLKGTEDPEFEESFSKIYTAPSLQKEWYSVLGNHDYR 328

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GDVEAQLSP+L + D+RW+C RSFI+D EI EF FVDTTPFVD+YF DP D  YDW+ + 
Sbjct: 329 GDVEAQLSPILKKMDNRWICLRSFIVDTEIVEFFFVDTTPFVDKYFNDPEDEIYDWKAIL 388

Query: 121 QRKEYLSDLLK 131
            R++YLS+LLK
Sbjct: 389 PRRKYLSNLLK 399

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47716659|gb|AAT37529.1| purple acid phosphatase 1 [Solanum tuberosum]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 111/131 (84%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG+IGEKL IDFV+STGDNFY+DGLTG DDPAF +SFT++YTAPSLQK WYNVLGNHDYR
Sbjct: 62  MGIIGEKLNIDFVVSTGDNFYDDGLTGVDDPAFEESFTNVYTAPSLQKNWYNVLGNHDYR 121

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           GD  AQLSP+L +KD+RW+C RS+I++ ++AEF FVDTTPF D YF  P D TYDWR V 
Sbjct: 122 GDALAQLSPILKQKDNRWICMRSYIVNTDVAEFFFVDTTPFQDMYFTTPKDHTYDWRNVM 181

Query: 121 QRKEYLSDLLK 131
            RK+YLS +LK
Sbjct: 182 PRKDYLSQVLK 192

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424458|ref|XP_002285160.1| PREDICTED: purple acid phosphatase 3 isoform 1 [Vitis vinifera] gi|297737582|emb|CBI26783.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 112/131 (85%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           MG +GE+L+IDFV+STGDNFY++GL+G  D AF  SF+ +YTAPSLQKQWYNVLGNHDYR
Sbjct: 58  MGRVGEELDIDFVVSTGDNFYDNGLSGIHDTAFEKSFSKVYTAPSLQKQWYNVLGNHDYR 117

Query: 61  GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
           G VEAQLSP+LT+ DSRWLC RSFIL+AEI EF FVDTTPFVD+YF DP D  YDW+GV 
Sbjct: 118 GKVEAQLSPILTKMDSRWLCLRSFILNAEIVEFFFVDTTPFVDKYFTDPEDHDYDWKGVL 177

Query: 121 QRKEYLSDLLK 131
            R+ YLS+LL+
Sbjct: 178 PRQAYLSNLLQ 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2006742	366	PAP3 "AT1G14700" [Arabidopsis	1.0	0.357	0.694	3.3e-47
TAIR|locus:2033010	339	AT1G25230 "AT1G25230" [Arabido	0.992	0.383	0.684	1.4e-46
TAIR|locus:2059743	328	PAP7 "AT2G01880" [Arabidopsis	0.992	0.396	0.661	3.8e-46
TAIR|locus:2088590	338	PAP17 "AT3G17790" [Arabidopsis	1.0	0.387	0.641	1.9e-44
TAIR|locus:2059748	335	PAP8 "AT2G01890" [Arabidopsis	0.992	0.388	0.646	5e-44
ZFIN|ZDB-GENE-040426-2864	339	acp5a "acid phosphatase 5a, ta	0.580	0.224	0.384	1.4e-12
ZFIN|ZDB-GENE-040718-151	327	acp5b "acid phosphatase 5b, ta	0.564	0.226	0.389	5.7e-12
WB|WBGene00008531	419	F02E9.7 [Caenorhabditis elegan	0.732	0.229	0.310	1.1e-10
UNIPROTKB|E2RBY6	343	ACP5 "Uncharacterized protein"	0.526	0.201	0.402	3.9e-10
UNIPROTKB|E1B8A0	338	ACP5 "Uncharacterized protein"	0.526	0.204	0.402	1e-09

TAIR|locus:2006742 PAP3 "AT1G14700" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 91/131 (69%), Positives = 106/131 (80%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             MG IGEKL+IDFVISTGDNFY++GLT   DP F DSFT+IYTAPSLQK WY+VLGNHDYR
Sbjct:    97 MGEIGEKLDIDFVISTGDNFYDNGLTSLHDPLFQDSFTNIYTAPSLQKPWYSVLGNHDYR 156

Query:    61 GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
             GDV AQLSP+L   D+RW+C RSFI++AEI +  FVDTTPFVD+YF  P    YDW GV 
Sbjct:   157 GDVRAQLSPMLRALDNRWVCMRSFIVNAEIVDLFFVDTTPFVDKYFIQPNKHVYDWSGVL 216

Query:   121 QRKEYLSDLLK 131
              R+ YL++LLK
Sbjct:   217 PRQTYLNNLLK 227

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0003993 "acid phosphatase activity" evidence=ISS

TAIR|locus:2033010 AT1G25230 "AT1G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 89/130 (68%), Positives = 104/130 (80%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             MG IGE+++I+FV+STGDN Y++G+   DDPAF  SF++IYT+PSLQK WY VLGNHDYR
Sbjct:    69 MGRIGEEMDINFVVSTGDNIYDNGMKSIDDPAFQLSFSNIYTSPSLQKPWYLVLGNHDYR 128

Query:    61 GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
             GDVEAQLSP+L   DSRW+C RSFI+DAEIAE  FVDTTPFVD YF  P D TYDW GV 
Sbjct:   129 GDVEAQLSPILRSMDSRWICMRSFIVDAEIAELFFVDTTPFVDAYFLSPQDQTYDWSGVS 188

Query:   121 QRKEYLSDLL 130
              RK YL  +L
Sbjct:   189 PRKSYLQTIL 198

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

TAIR|locus:2059743 PAP7 "AT2G01880" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 86/130 (66%), Positives = 106/130 (81%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             MG++GEKL+IDFVIS GDNFY+DGL G +DP+F  SF+ IYT PSLQKQWY+VLGNHDYR
Sbjct:    64 MGVVGEKLDIDFVISVGDNFYDDGLKGVNDPSFEASFSHIYTHPSLQKQWYSVLGNHDYR 123

Query:    61 GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
             G+VEAQLS VLT+KD RW C RSF+L + + +F F DT PFV++YF +P D TYDWR V 
Sbjct:   124 GNVEAQLSKVLTQKDWRWFCRRSFVLSSGMVDFFFADTNPFVEKYFTEPEDHTYDWRNVL 183

Query:   121 QRKEYLSDLL 130
              R +Y+S+LL
Sbjct:   184 PRNKYISNLL 193

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=ISS

TAIR|locus:2088590 PAP17 "AT3G17790" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 84/131 (64%), Positives = 102/131 (77%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             MG IGEK+++DFV+STGDNFY++GL  E DP F  SF++IYTAPSLQKQWY+VLGNHDYR
Sbjct:    69 MGKIGEKIDLDFVVSTGDNFYDNGLFSEHDPNFEQSFSNIYTAPSLQKQWYSVLGNHDYR 128

Query:    61 GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
             GD EAQLS VL   DSRW+C RSF++DAE+ E  FVDTTPFV EY+ +    +YDWR V 
Sbjct:   129 GDAEAQLSSVLREIDSRWICLRSFVVDAELVEMFFVDTTPFVKEYYTEADGHSYDWRAVP 188

Query:   121 QRKEYLSDLLK 131
              R  Y+  LL+
Sbjct:   189 SRNSYVKALLR 199

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISS

GO:0016791 "phosphatase activity" evidence=IDA

GO:0030643 "cellular phosphate ion homeostasis" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0003993 "acid phosphatase activity" evidence=ISS

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2059748 PAP8 "AT2G01890" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 84/130 (64%), Positives = 100/130 (76%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             MG IG+ L IDF+ISTGDNFY+DG+    D  F DSFT+IYTA SLQK WYNVLGNHDYR
Sbjct:    68 MGKIGKDLNIDFLISTGDNFYDDGIISPYDSQFQDSFTNIYTATSLQKPWYNVLGNHDYR 127

Query:    61 GDVEAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120
             G+V AQLSP+L   D RW+C RS++++AEI +  FVDTTPFVD YF +P D  YDWRGV 
Sbjct:   128 GNVYAQLSPILRDLDCRWICLRSYVVNAEIVDIFFVDTTPFVDRYFDEPKDHVYDWRGVL 187

Query:   121 QRKEYLSDLL 130
              R +YL+ LL
Sbjct:   188 PRNKYLNSLL 197

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016311 "dephosphorylation" evidence=ISS

GO:0003993 "acid phosphatase activity" evidence=ISS

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

ZFIN|ZDB-GENE-040426-2864 acp5a "acid phosphatase 5a, tartrate resistant" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             M     ++  DF+++ GDNFY  G+T  +DP F ++F  +YT  SL   WY + GNHD+ 
Sbjct:    64 MAKTASQMGADFILAVGDNFYYKGVTDVNDPRFQETFEDVYTQDSLNIPWYVIAGNHDHV 123

Query:    61 GDVEAQLSPVLTRKDSRW 78
             G+V+AQ+    +++  RW
Sbjct:   124 GNVKAQIE--YSQRSKRW 139

GO:0003993 "acid phosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040718-151 acp5b "acid phosphatase 5b, tartrate resistant" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 5.7e-12, P = 5.7e-12
 Identities = 30/77 (38%), Positives = 48/77 (62%)

Query:     4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGD 62
             + +   +DFV+S GDNFY DG+   DD  F  S+  +++ P+L    WY + GNHD+RG+
Sbjct:    60 VAQSSGLDFVLSLGDNFYYDGVKDVDDTRFKFSYEQVFSHPALMTIPWYLIAGNHDHRGN 119

Query:    63 VEAQLSPVLTRKDSRWL 79
             V AQ++   + +  RW+
Sbjct:   120 VSAQIA--YSSRSERWI 134

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00008531 F02E9.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/103 (31%), Positives = 53/103 (51%)

Query:     1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
             M  + ++  +  +++ GDN Y  G T E DP F   F ++YT PSLQ  W  + GNHD+ 
Sbjct:   107 MASLADEHSVQMILNMGDNIYFTGPTDEFDPRFESRFENVYTNPSLQVPWLTIAGNHDHF 166

Query:    61 GDVEAQLSPVLTRKDSRWLC-----SRSFILDAEIAEFVFVDT 98
             G+V A++    T+   +W        +S   +    +F+ +DT
Sbjct:   167 GNVTAEIE--YTKHSKKWYFPSLYYKKSVEFNGTSIDFLMIDT 207

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RBY6 ACP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 29/72 (40%), Positives = 45/72 (62%)

Query:     8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
             L  DF++S GDNFY  G+   +D  F ++F  +++A SL+   WY + GNHD+ G+V AQ
Sbjct:    69 LGTDFILSLGDNFYFSGVQDANDKRFRETFEDVFSASSLRNVPWYVLAGNHDHLGNVSAQ 128

Query:    67 LSPVLTRKDSRW 78
             ++   +R   RW
Sbjct:   129 IA--YSRISKRW 138

GO:0060349 "bone morphogenesis" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0045453 "bone resorption" evidence=IEA

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0032929 "negative regulation of superoxide anion generation" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032695 "negative regulation of interleukin-12 production" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IEA

UNIPROTKB|E1B8A0 ACP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query:     8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
             L  DFV+S GDNFY  G+   +D  F ++F  +++A  L+   WY + GNHD+ G+V AQ
Sbjct:    67 LGADFVLSLGDNFYFSGVQDVNDKRFQETFEDVFSASPLRSVPWYVLAGNHDHLGNVSAQ 126

Query:    67 LSPVLTRKDSRW 78
             ++   +R   RW
Sbjct:   127 IA--YSRVSKRW 136

GO:0060349 "bone morphogenesis" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0050728 "negative regulation of inflammatory response" evidence=IEA

GO:0045453 "bone resorption" evidence=IEA

GO:0045019 "negative regulation of nitric oxide biosynthetic process" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0032929 "negative regulation of superoxide anion generation" evidence=IEA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IEA

GO:0032695 "negative regulation of interleukin-12 production" evidence=IEA

GO:0032691 "negative regulation of interleukin-1 beta production" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	LOW CONFIDENCE prediction!
3rd Layer	3.1.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
cd07378	277	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5	5e-34
PTZ00422	394	PTZ00422, PTZ00422, glideosome-associated protein	3e-05
pfam00149	185	pfam00149, Metallophos, Calcineurin-like phosphoes	1e-04
cd00838	131	cd00838, MPP_superfamily, metallophosphatase super	0.001

>gnl|CDD|163621 cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain

 Score =  118 bits (299), Expect = 5e-34
 Identities = 52/138 (37%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60
           M  +  +L  DF++S GDNFY+DG+   DDP F  +F  +Y+APSLQ  WY VLGNHDY 
Sbjct: 24  MAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNHDYS 83

Query: 61  GDVEAQLSPVLTRKDSRWLC-------SRSFILDAEIAEFVFVDTTPFVDEYFQDPGDST 113
           G+V AQ+         RW         S  F       EF+ +DT P       D   S 
Sbjct: 84  GNVSAQIDYTKRPNSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNS--DDIASP 141

Query: 114 YDWRGVYQRKEYLSDLLK 131
           Y        +E L+ L K
Sbjct: 142 YGPPNGKLAEEQLAWLEK 159

Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 277

>gnl|CDD|185607 PTZ00422, PTZ00422, glideosome-associated protein 50; Provisional

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT--APSLQKQWYNVLGNHDYRGDV 63
           +   + F++S G NF   G+ G +DP +   F ++Y+  +  +Q  ++ VLG  D+ G+ 
Sbjct: 54  KNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGNY 112

Query: 64  EAQL 67
            A+L
Sbjct: 113 NAEL 116

Length = 394

>gnl|CDD|215750 pfam00149, Metallophos, Calcineurin-like phosphoesterase

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 6/104 (5%)

Query: 4   IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDV 63
           +  + + D V+  GD       + E                      Y V GNHD+    
Sbjct: 24  LLGEPKPDLVLFLGDLVDRGPPSLEVLALLF------ALKLKAPGPVYLVRGNHDFDSGN 77

Query: 64  EAQLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQ 107
                 +        L +            +           ++
Sbjct: 78  SELGFYLECAGLPYVLGNGDVSNGTVEIIGLSSLYGKGGGLVWE 121

This family includes a diverse range of phosphoesterases, including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this superfamily centre around the metal chelating residues. Length = 185

>gnl|CDD|163614 cd00838, MPP_superfamily, metallophosphatase superfamily, metallophosphatase domain

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 6  EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHD 58
             + DFV+  GD    DG   E+  A   +   +   P      Y V GNHD
Sbjct: 23 AAEKPDFVLVLGDLVG-DGPDPEEVLAAALALLLLLGIP-----VYVVPGNHD 69

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
KOG2679	336	consensus Purple (tartrate-resistant) acid phospha	100.0
PTZ00422	394	glideosome-associated protein 50; Provisional	99.96
cd07378	277	MPP_ACP5 Homo sapiens acid phosphatase 5 and relat	99.83
cd00839	294	MPP_PAPs purple acid phosphatases of the metalloph	99.28
PLN02533	427	probable purple acid phosphatase	99.17
cd08163	257	MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related	99.09
cd07396	267	MPP_Nbla03831 Homo sapiens Nbla03831 and related p	99.06
cd07395	262	MPP_CSTP1 Homo sapiens CSTP1 and related proteins,	99.02
cd07401	256	MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal	99.01
KOG1432	379	consensus Predicted DNA repair exonuclease SIA1 [G	98.99
cd07402	240	MPP_GpdQ Enterobacter aerogenes GpdQ and related p	98.93
cd00842	296	MPP_ASMase acid sphingomyelinase and related prote	98.79
KOG1378	452	consensus Purple acid phosphatase [Carbohydrate tr	98.75
PRK11148	275	cyclic 3',5'-adenosine monophosphate phosphodieste	98.73
cd07383	199	MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase	98.53
cd08166	195	MPP_Cdc1_like_1 uncharacterized subgroup related t	98.41
PF00149	200	Metallophos: Calcineurin-like phosphoesterase; Int	98.37
KOG3662	410	consensus Cell division control protein/predicted	98.28
cd07384	171	MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and re	98.28
cd08165	156	MPP_MPPE1 human MPPE1 and related proteins, metall	98.26
cd07385	223	MPP_YkuE_C Bacillus subtilis YkuE and related prot	98.17
cd00840	223	MPP_Mre11_N Mre11 nuclease, N-terminal metallophos	98.17
cd08164	193	MPP_Ted1 Saccharomyces cerevisiae Ted1 and related	98.13
PHA02546	340	47 endonuclease subunit; Provisional	98.12
COG0420	390	SbcD DNA repair exonuclease [DNA replication, reco	98.11
PRK10966	407	exonuclease subunit SbcD; Provisional	98.07
TIGR00619	253	sbcd exonuclease SbcD. This family is based on the	98.05
cd07400	144	MPP_YydB Bacillus subtilis YydB and related protei	98.04
cd07399	214	MPP_YvnB Bacillus subtilis YvnB and related protei	98.01
cd00838	131	MPP_superfamily metallophosphatase superfamily, me	98.0
cd07391	172	MPP_PF1019 Pyrococcus furiosus PF1019 and related	97.98
COG1409	301	Icc Predicted phosphohydrolases [General function	97.92
TIGR03729	239	acc_ester putative phosphoesterase. Members of thi	97.92
cd07389	228	MPP_PhoD Bacillus subtilis PhoD and related protei	97.91
cd07392	188	MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel	97.9
PRK11340	271	phosphodiesterase YaeI; Provisional	97.89
cd07404	166	MPP_MS158 Microscilla MS158 and related proteins,	97.78
TIGR00583	405	mre11 DNA repair protein (mre11). All proteins in	97.75
cd07388	224	MPP_Tt1561 Thermus thermophilus Tt1561 and related	97.65
cd07393	232	MPP_DR1119 Deinococcus radiodurans DR1119 and rela	97.57
cd07379	135	MPP_239FB Homo sapiens 239FB and related proteins,	97.48
PRK05340	241	UDP-2,3-diacylglucosamine hydrolase; Provisional	97.44
TIGR03768	492	RPA4764 metallophosphoesterase, RPA4764 family. Th	97.43
TIGR01854	231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	97.39
cd07397	238	MPP_DevT Myxococcus xanthus DevT and related prote	97.37
TIGR00024	225	SbcD_rel_arch putative phosphoesterase, SbcD/Mre11	97.35
COG1408	284	Predicted phosphohydrolases [General function pred	97.23
COG1407	235	Predicted ICC-like phosphoesterases [General funct	97.21
PRK09453	182	phosphodiesterase; Provisional	97.19
cd07398	217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	97.16
PF12850	156	Metallophos_2: Calcineurin-like phosphoesterase su	97.12
cd07386	243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	97.09
TIGR00040	158	yfcE phosphoesterase, MJ0936 family. Members of th	96.99
TIGR03767	496	P_acnes_RR metallophosphoesterase, PPA1498 family.	96.98
cd07390	168	MPP_AQ1575 Aquifex aeolicus AQ1575 and related pro	96.84
cd00841	155	MPP_YfcE Escherichia coli YfcE and related protein	96.78
PF14582	255	Metallophos_3: Metallophosphoesterase, calcineurin	96.64
cd07403	129	MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel	96.34
cd07425	208	MPP_Shelphs Shewanella-like phosphatases, metallop	96.32
PHA02239	235	putative protein phosphatase	96.25
PF09423	453	PhoD: PhoD-like phosphatase; InterPro: IPR018946 T	96.17
cd07394	178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	96.15
PRK04036	504	DNA polymerase II small subunit; Validated	96.13
cd07422	257	MPP_ApaH Escherichia coli ApaH and related protein	95.8
KOG3770	577	consensus Acid sphingomyelinase and PHM5 phosphate	95.69
PRK00166	275	apaH diadenosine tetraphosphatase; Reviewed	95.64
cd00844	262	MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t	95.59
cd00144	225	MPP_PPP_family phosphoprotein phosphatases of the	95.47
cd07413	222	MPP_PA3087 Pseudomonas aeruginosa PA3087 and relat	95.25
KOG2310	646	consensus DNA repair exonuclease MRE11 [Replicatio	95.07
cd07424	207	MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase do	94.44
PRK13625	245	bis(5'-nucleosyl)-tetraphosphatase PrpE; Provision	94.22
cd07423	234	MPP_PrpE Bacillus subtilis PrpE and related protei	93.88
TIGR00668	279	apaH bis(5'-nucleosyl)-tetraphosphatase (symmetric	93.83
PRK11439	218	pphA serine/threonine protein phosphatase 1; Provi	93.73
COG2908	237	Uncharacterized protein conserved in bacteria [Fun	93.35
cd07406	257	MPP_CG11883_N Drosophila melanogaster CG11883 and	93.35
COG2129	226	Predicted phosphoesterases, related to the Icc pro	92.89
cd07421	304	MPP_Rhilphs Rhilph phosphatases, metallophosphatas	92.82
COG1768	230	Predicted phosphohydrolase [General function predi	92.81
cd07410	277	MPP_CpdB_N Escherichia coli CpdB and related prote	92.49
cd00845	252	MPP_UshA_N_like Escherichia coli UshA-like family,	92.37
COG0622	172	Predicted phosphoesterase [General function predic	91.8
COG4186	186	Predicted phosphoesterase or phosphohydrolase [Gen	90.9
cd07380	150	MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re	90.76
PRK09968	218	serine/threonine-specific protein phosphatase 2; P	90.38
cd07408	257	MPP_SA0022_N Staphylococcus aureus SA0022 and rela	90.22
COG3540	522	PhoD Phosphodiesterase/alkaline phosphatase D [Ino	90.22
cd07411	264	MPP_SoxB_N Thermus thermophilus SoxB and related p	88.67
smart00156	271	PP2Ac Protein phosphatase 2A homologues, catalytic	85.61
cd07382	255	MPP_DR1281 Deinococcus radiodurans DR1281 and rela	85.4
cd07420	321	MPP_RdgC Drosophila melanogaster RdgC and related	84.2
cd07418	377	MPP_PP7 PP7, metallophosphatase domain. PP7 is a p	83.36
PF04042	209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	83.15
cd07387	257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	83.0
cd07409	281	MPP_CD73_N CD73 ecto-5'-nucleotidase and related p	82.93
cd07416	305	MPP_PP2B PP2B, metallophosphatase domain. PP2B (ca	82.79
cd07419	311	MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase a	82.41
cd07412	288	MPP_YhcR_N Bacillus subtilis YhcR endonuclease and	82.08

>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-33  Score=216.46  Aligned_cols=130  Identities=69%  Similarity=1.201  Sum_probs=121.8

Q ss_pred             ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839            1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC   80 (131)
Q Consensus         1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~   80 (131)
                      ||+++++.+.||||++|||||.+|+.+..||+|+.+|+.+|+.++|+.|||.|+||||++|+++||+.+.+++.++||.|
T Consensus        67 mg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c  146 (336)
T KOG2679|consen   67 MGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWIC  146 (336)
T ss_pred             HHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceec
Confidence            78999999999999999999999999999999999999999999999999999999999999999999777888999999


Q ss_pred             cceEEecCCeEEEEEEeCCcCcccccCCCCCCCCcccccchhHHHHHHhh
Q 040839           81 SRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLL  130 (131)
Q Consensus        81 p~~~~~~~~~v~~~~lDT~~~~~~y~~~~~~~~~~w~~~~~~~~~~~~~~  130 (131)
                      |+.|+++...|.++++||.+|+.+|..-+...-++|.....|..|++.++
T Consensus       147 ~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l  196 (336)
T KOG2679|consen  147 PRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALL  196 (336)
T ss_pred             ccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHH
Confidence            99988887889999999999999888766666789999999999988775

>PTZ00422 glideosome-associated protein 50; Provisional

Probab=99.96  E-value=1e-29  Score=204.57  Aligned_cols=118  Identities=23%  Similarity=0.487  Sum_probs=95.5

Q ss_pred             ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCC--CCCceEEeCCCcccCCCchhhcCccc-------
Q 040839            1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPS--LQKQWYNVLGNHDYRGDVEAQLSPVL-------   71 (131)
Q Consensus         1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~--l~~p~~~vlGNHD~~~~~~aq~~~~~-------   71 (131)
                      |+++|++.+|+|||++|||| ++|+.+.+||+|++.||++|..++  |++|||+|+|||||+|+..||+++..       
T Consensus        49 M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~  127 (394)
T PTZ00422         49 LKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGH  127 (394)
T ss_pred             HHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccc
Confidence            78999999999999999999 899999999999999999998877  99999999999999999999986311       


Q ss_pred             ----------cccCCCCcccc-eEEe-----------------cCCeEEEEEEeCCcCcccccCCCCCCCCcccccc
Q 040839           72 ----------TRKDSRWLCSR-SFIL-----------------DAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY  120 (131)
Q Consensus        72 ----------~~~~~~w~~p~-~~~~-----------------~~~~v~~~~lDT~~~~~~y~~~~~~~~~~w~~~~  120 (131)
                                +..++||.||+ +|.+                 .+..|+||||||+++...|. .+...+.+|..+.
T Consensus       128 ~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~-~~~~~~~~w~~L~  203 (394)
T PTZ00422        128 GQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFP-YKKVSERAWQDLK  203 (394)
T ss_pred             cccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECchhcccCC-ccccCHHHHHHHH
Confidence                      12369999995 5532                 12459999999999987543 2233445565433

>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain

Probab=99.83  E-value=3.8e-20  Score=142.15  Aligned_cols=105  Identities=41%  Similarity=0.795  Sum_probs=83.5

Q ss_pred             ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839            1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC   80 (131)
Q Consensus         1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~   80 (131)
                      |.+++++.+|||||++||++|..|..+..+++|...|++++....+++|||++|||||+.++..++..+......++|.+
T Consensus        24 ~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~  103 (277)
T cd07378          24 MAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTM  103 (277)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccC
Confidence            45677778999999999999999998877889988888888644468999999999999988777766521112688988


Q ss_pred             cc-eEEecCC------eEEEEEEeCCcCcccc
Q 040839           81 SR-SFILDAE------IAEFVFVDTTPFVDEY  105 (131)
Q Consensus        81 p~-~~~~~~~------~v~~~~lDT~~~~~~y  105 (131)
                      |. +|++..+      .++||+|||+.+.+.+
T Consensus       104 ~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~  135 (277)
T cd07378         104 PAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNS  135 (277)
T ss_pred             cchheEEEeecCCCCCEEEEEEEeChhHcCcc
Confidence            84 6666544      7999999999876544

Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma

>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=99.28  E-value=2.1e-11  Score=94.28  Aligned_cols=90  Identities=16%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             cCCCEEEEcCCccCCCCCCCC-CChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccc-----cccCCCCcc-
Q 040839            8 LEIDFVISTGDNFYEDGLTGE-DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVL-----TRKDSRWLC-   80 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~-~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~-----~~~~~~w~~-   80 (131)
                      .+|||||++||++|..|..+. ....|...++.+.    ..+|+++++||||+............     ......... 
T Consensus        32 ~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~----~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (294)
T cd00839          32 GNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLA----SYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTS  107 (294)
T ss_pred             CCccEEEEcCchhhhcCCccchhHHHHHHHHHHHH----hcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCC
Confidence            789999999999998876421 1223333333222    35999999999999764332221100     000011111 


Q ss_pred             cceEEecCCeEEEEEEeCCcC
Q 040839           81 SRSFILDAEIAEFVFVDTTPF  101 (131)
Q Consensus        81 p~~~~~~~~~v~~~~lDT~~~  101 (131)
                      +.+|+++.+.++||+|||...
T Consensus       108 ~~~Ysf~~g~v~fi~Lds~~~  128 (294)
T cd00839         108 NLWYSFDVGPVHFVSLSTEVD  128 (294)
T ss_pred             CceEEEeeCCEEEEEEecccc
Confidence            246888888999999999754

Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver

>PLN02533 probable purple acid phosphatase

Probab=99.17  E-value=1.2e-10  Score=95.55  Aligned_cols=88  Identities=18%  Similarity=0.282  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchh-hcCccccccCCCCccc---
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA-QLSPVLTRKDSRWLCS---   81 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~a-q~~~~~~~~~~~w~~p---   81 (131)
                      .+.+|||||++||+.|.++.    ..+|.. |.+....-...+|+++++||||....... ...+  .....+|.||   
T Consensus       162 ~~~~pD~vl~~GDl~y~~~~----~~~wd~-f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f--~~y~~rf~mP~~~  234 (427)
T PLN02533        162 SKWDYDVFILPGDLSYANFY----QPLWDT-FGRLVQPLASQRPWMVTHGNHELEKIPILHPEKF--TAYNARWRMPFEE  234 (427)
T ss_pred             HhcCCCEEEEcCccccccch----HHHHHH-HHHHhhhHhhcCceEEeCccccccccccccCcCc--cchhhcccCCccc
Confidence            45689999999999996532    345544 33222211235999999999998743111 1111  1224678876   


Q ss_pred             ------ceEEecCCeEEEEEEeCCc
Q 040839           82 ------RSFILDAEIAEFVFVDTTP  100 (131)
Q Consensus        82 ------~~~~~~~~~v~~~~lDT~~  100 (131)
                            .+|+|+.+.++||+|||..
T Consensus       235 ~g~~~~~yYSfd~g~vhfI~Lds~~  259 (427)
T PLN02533        235 SGSTSNLYYSFNVYGVHIIMLGSYT  259 (427)
T ss_pred             cCCCCCceEEEEECCEEEEEEeCCc
Confidence                  2677998999999999963

>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=99.09  E-value=1.2e-10  Score=89.82  Aligned_cols=95  Identities=23%  Similarity=0.287  Sum_probs=58.5

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHH---HHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLD---SFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC   80 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~   80 (131)
                      +.+..+||+||++||.+- .|- ...+.+|.+   .|.+++......+|++.||||||...........  .+...++..
T Consensus        40 ~~~~l~PD~vv~lGDL~d-~G~-~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~--~~rf~~~Fg  115 (257)
T cd08163          40 MQKQLKPDSTIFLGDLFD-GGR-DWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPV--RQRFEKYFG  115 (257)
T ss_pred             HHHhcCCCEEEEeccccc-CCe-eCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHH--HHHHHHHhC
Confidence            455679999999999863 333 224566654   3556664322358999999999985431111000  011112223


Q ss_pred             cceEEecCCeEEEEEEeCCcCc
Q 040839           81 SRSFILDAEIAEFVFVDTTPFV  102 (131)
Q Consensus        81 p~~~~~~~~~v~~~~lDT~~~~  102 (131)
                      +.++.+..+.++||+|||..+.
T Consensus       116 ~~~~~~~~~~~~fV~Lds~~l~  137 (257)
T cd08163         116 PTSRVIDVGNHTFVILDTISLS  137 (257)
T ss_pred             CCceEEEECCEEEEEEcccccc
Confidence            3466777788999999998654

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site

>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain

Probab=99.06  E-value=6.4e-10  Score=85.66  Aligned_cols=85  Identities=21%  Similarity=0.248  Sum_probs=54.4

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCccc-ceEE
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCS-RSFI   85 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p-~~~~   85 (131)
                      +.+||+||.+||.+......  .+.++. .+.+++.  .+++|++.+|||||+..........     ......+ .+|+
T Consensus        38 ~~~~d~vv~~GDlv~~~~~~--~~~~~~-~~~~~l~--~l~~p~~~v~GNHD~~~~~~~~~~~-----~~~~~~~~~yys  107 (267)
T cd07396          38 RESLDFVVQLGDIIDGDNAR--AEEALD-AVLAILD--RLKGPVHHVLGNHDLYNPSREYLLL-----YTLLGLGAPYYS  107 (267)
T ss_pred             cCCCCEEEECCCeecCCCch--HHHHHH-HHHHHHH--hcCCCEEEecCccccccccHhhhhc-----ccccCCCCceEE
Confidence            45699999999988533211  122333 3444543  5789999999999997543222210     0122233 5778


Q ss_pred             ecCCeEEEEEEeCCcC
Q 040839           86 LDAEIAEFVFVDTTPF  101 (131)
Q Consensus        86 ~~~~~v~~~~lDT~~~  101 (131)
                      +..+.++|++|||...
T Consensus       108 f~~~~~~~i~lds~~~  123 (267)
T cd07396         108 FSPGGIRFIVLDGYDI  123 (267)
T ss_pred             EecCCcEEEEEeCCcc
Confidence            8878999999999754

Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain

Probab=99.02  E-value=7.5e-10  Score=84.61  Aligned_cols=86  Identities=14%  Similarity=0.122  Sum_probs=52.1

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchh--hcCccccccCCCCcccceEEe
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA--QLSPVLTRKDSRWLCSRSFIL   86 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~a--q~~~~~~~~~~~w~~p~~~~~   86 (131)
                      +|+|||++||.+...........+ ...+.+++..-..++|++.++||||.......  ...+     ...| .+.+|++
T Consensus        49 ~pd~ii~~GDl~~~~~~~~~~~~~-~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f-----~~~~-g~~~y~~  121 (262)
T cd07395          49 KPKFVVVCGDLVNAMPGDELRERQ-VSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDY-----RDVF-GDDYFSF  121 (262)
T ss_pred             CCCEEEEeCCcCCCCcchhhHHHH-HHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHH-----HHHh-CCcceEE
Confidence            899999999998644321111122 23355555422236999999999998532111  0111     0112 2456777


Q ss_pred             cCCeEEEEEEeCCcC
Q 040839           87 DAEIAEFVFVDTTPF  101 (131)
Q Consensus        87 ~~~~v~~~~lDT~~~  101 (131)
                      ..+.++||+|||..+
T Consensus       122 ~~~~~~~i~lds~~~  136 (262)
T cd07395         122 WVGGVFFIVLNSQLF  136 (262)
T ss_pred             EECCEEEEEeccccc
Confidence            768899999999854

CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th

>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain

Probab=99.01  E-value=7.1e-10  Score=85.16  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=54.5

Q ss_pred             hhhhcCCCEEEEcCCccC---CCCCCCCCCh-HHHHHHHhhcCC-CCC-CCceEEeCCCcccCCCch--hhcCccccccC
Q 040839            4 IGEKLEIDFVISTGDNFY---EDGLTGEDDP-AFLDSFTSIYTA-PSL-QKQWYNVLGNHDYRGDVE--AQLSPVLTRKD   75 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y---~~G~~~~~d~-~~~~~~~~~~~~-~~l-~~p~~~vlGNHD~~~~~~--aq~~~~~~~~~   75 (131)
                      ..++.+||+||.+||.+-   ..+++...++ +|. .|.+.+.. ..+ ++||+.++||||..+...  ....+ +.+ .
T Consensus        28 ~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~-~~~-y  104 (256)
T cd07401          28 FIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQ-KYYNILKESSVINKEKWFDIRGNHDLFNIPSLDSENNY-YRK-Y  104 (256)
T ss_pred             HHHhhCCCEEEEccccccccccCCCcccccHHHHH-HHHHHHHHhCCCCcceEEEeCCCCCcCCCCCccchhhH-HHH-h
Confidence            345678999999999663   2233222333 343 45544422 123 599999999999975322  22222 111 1


Q ss_pred             CCCcc-cc-eEE--ecCCeEEEEEEeCCcC
Q 040839           76 SRWLC-SR-SFI--LDAEIAEFVFVDTTPF  101 (131)
Q Consensus        76 ~~w~~-p~-~~~--~~~~~v~~~~lDT~~~  101 (131)
                      .++.+ +. +|.  ...+.++||+|||..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~  134 (256)
T cd07401         105 SATGRDGSFSFSHTTRFGNYSFIGVDPTLF  134 (256)
T ss_pred             heecCCCccceEEEecCCCEEEEEEcCccC
Confidence            22322 32 232  2347899999999864

TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]

Probab=98.99  E-value=2.3e-09  Score=85.16  Aligned_cols=118  Identities=24%  Similarity=0.417  Sum_probs=70.8

Q ss_pred             ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCCchh--------hcCccc
Q 040839            1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGDVEA--------QLSPVL   71 (131)
Q Consensus         1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~~~a--------q~~~~~   71 (131)
                      |.++.+.++||+||++|||++..-.   .|.  ++.+..+.++ .+-+|||.+++||||-.+.+..        ++.++.
T Consensus        92 ~~rvL~sE~PDlVVfTGD~i~g~~t---~Da--~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~  166 (379)
T KOG1432|consen   92 VSRVLASEKPDLVVFTGDNIFGHST---QDA--ATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSL  166 (379)
T ss_pred             HHHHHhccCCCEEEEeCCccccccc---HhH--HHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCcc
Confidence            4577889999999999999985322   233  3445544432 2557999999999999876432        233333


Q ss_pred             cccCCC--Ccc---c-ceEE--ec---------CCeEEEEEEeCCcCcccccCCC-CCCCCcccccchhHHHHHH
Q 040839           72 TRKDSR--WLC---S-RSFI--LD---------AEIAEFVFVDTTPFVDEYFQDP-GDSTYDWRGVYQRKEYLSD  128 (131)
Q Consensus        72 ~~~~~~--w~~---p-~~~~--~~---------~~~v~~~~lDT~~~~~~y~~~~-~~~~~~w~~~~~~~~~~~~  128 (131)
                      .+.++.  +..   . .+|.  +.         .....++|||+...    ..++ ....|+|..-+ |.++++.
T Consensus       167 ~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~----~s~~~~~~~Ydwik~s-q~~wl~~  236 (379)
T KOG1432|consen  167 SQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSY----TSVPPLLPGYDWIKES-QLEWLSD  236 (379)
T ss_pred             ccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCc----ccccccccCccchhhh-hHHHHhh
Confidence            222211  110   1 1222  11         12567899999753    3333 45667888666 6666653

>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain

Probab=98.93  E-value=8e-09  Score=77.49  Aligned_cols=79  Identities=20%  Similarity=0.294  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceEEecC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDA   88 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~~~~~   88 (131)
                      +||+||++||.+...      .+...+.+.+.+.  .+++|++.|+||||..........    .. ..-..+.+|.+..
T Consensus        40 ~~d~vi~~GDl~~~~------~~~~~~~~~~~l~--~~~~p~~~v~GNHD~~~~~~~~~~----~~-~~~~~~~~~~~~~  106 (240)
T cd07402          40 RPDLVLVTGDLTDDG------SPESYERLRELLA--ALPIPVYLLPGNHDDRAAMRAVFP----EL-PPAPGFVQYVVDL  106 (240)
T ss_pred             CCCEEEECccCCCCC------CHHHHHHHHHHHh--hcCCCEEEeCCCCCCHHHHHHhhc----cc-cccccccceeEec
Confidence            899999999988532      2332334555543  468999999999998643222111    10 0001124677887


Q ss_pred             CeEEEEEEeCCc
Q 040839           89 EIAEFVFVDTTP  100 (131)
Q Consensus        89 ~~v~~~~lDT~~  100 (131)
                      +.++|++|||..
T Consensus       107 ~~~~~i~lds~~  118 (240)
T cd07402         107 GGWRLILLDSSV  118 (240)
T ss_pred             CCEEEEEEeCCC
Confidence            899999999975

GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa

>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain

Probab=98.79  E-value=2e-08  Score=78.07  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHH---HHHHHhhcCCCCCCCceEEeCCCcccCCCc--hh--hcCccccccCCCCc-
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAF---LDSFTSIYTAPSLQKQWYNVLGNHDYRGDV--EA--QLSPVLTRKDSRWL-   79 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~---~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~--~a--q~~~~~~~~~~~w~-   79 (131)
                      .+|||||++||++.............   ...+.+.+.....++|+++++||||.....  ..  .....+......|. 
T Consensus        67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~  146 (296)
T cd00842          67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKS  146 (296)
T ss_pred             CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHh
Confidence            38999999999997554322111111   122223332222459999999999996421  00  00000000011121 


Q ss_pred             -c----------cceEEec-CCeEEEEEEeCCcCcc
Q 040839           80 -C----------SRSFILD-AEIAEFVFVDTTPFVD  103 (131)
Q Consensus        80 -~----------p~~~~~~-~~~v~~~~lDT~~~~~  103 (131)
                       +          ..+|++. .+.+++|+|||+.+..
T Consensus       147 ~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~  182 (296)
T cd00842         147 WLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYK  182 (296)
T ss_pred             hcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccc
Confidence             1          1356655 6889999999997543

Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but

>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]

Probab=98.75  E-value=1.7e-08  Score=82.78  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=67.0

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCccc------
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCS------   81 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p------   81 (131)
                      .++|+|+++||..|..+-.+   ++|.+ |-+....-.-.+||-++.|||+......-  .  ...-..||.||      
T Consensus       173 ~k~d~vlhiGDlsYa~~~~n---~~wD~-f~r~vEp~As~vPymv~~GNHE~d~~~~~--~--F~~y~~Rf~mP~~~s~s  244 (452)
T KOG1378|consen  173 LKPDAVLHIGDLSYAMGYSN---WQWDE-FGRQVEPIASYVPYMVCSGNHEIDWPPQP--C--FVPYSARFNMPGNSSES  244 (452)
T ss_pred             cCCcEEEEecchhhcCCCCc---cchHH-HHhhhhhhhccCceEEecccccccCCCcc--c--ccccceeeccCCCcCCC
Confidence            36999999999999887764   45544 33222222346999999999998643111  1  22335788887      


Q ss_pred             ---ceEEecCCeEEEEEEeCCcCcccccCCCCCCCCcccc
Q 040839           82 ---RSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRG  118 (131)
Q Consensus        82 ---~~~~~~~~~v~~~~lDT~~~~~~y~~~~~~~~~~w~~  118 (131)
                         .+|+++.|.|+||+|+|.-.-   -...+..|+.|..
T Consensus       245 ~~~l~YSfd~G~vhfv~lsse~~~---~~~~~~~QY~WL~  281 (452)
T KOG1378|consen  245 DSNLYYSFDVGGVHFVVLSTETYY---NFLKGTAQYQWLE  281 (452)
T ss_pred             CCceeEEEeeccEEEEEEeccccc---cccccchHHHHHH
Confidence               368899999999999997431   1233455666653

>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional

Probab=98.73  E-value=3.5e-08  Score=76.22  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=48.4

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceEEec
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILD   87 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~~~~   87 (131)
                      .+|||||.+||.+..      ..++-...+.+.+.  .+++|+|.+|||||...........      ..+. +.++.+.
T Consensus        54 ~~~D~vvitGDl~~~------~~~~~~~~~~~~l~--~l~~Pv~~v~GNHD~~~~~~~~~~~------~~~~-~~~~~~~  118 (275)
T PRK11148         54 HEFDLIVATGDLAQD------HSSEAYQHFAEGIA--PLRKPCVWLPGNHDFQPAMYSALQD------AGIS-PAKHVLI  118 (275)
T ss_pred             CCCCEEEECCCCCCC------CCHHHHHHHHHHHh--hcCCcEEEeCCCCCChHHHHHHHhh------cCCC-ccceEEe
Confidence            469999999998741      12333344555543  5689999999999986432222210      1111 2233344


Q ss_pred             CCeEEEEEEeCCc
Q 040839           88 AEIAEFVFVDTTP  100 (131)
Q Consensus        88 ~~~v~~~~lDT~~  100 (131)
                      ++.++||+|||+.
T Consensus       119 ~~~~~~i~Lds~~  131 (275)
T PRK11148        119 GEHWQILLLDSQV  131 (275)
T ss_pred             cCCEEEEEecCCC
Confidence            5679999999974

>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain

Probab=98.53  E-value=8.3e-08  Score=70.67  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=37.1

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCCc
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGDV   63 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~~   63 (131)
                      ++.++.+||+||++||+++......    +.+..+++++.. ...++|+++++||||..+-+
T Consensus        35 ~~~~~~~~d~vv~~GDl~~~~~~~~----~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~g~l   92 (199)
T cd07383          35 RVLDAEKPDLVVLTGDLITGENTND----NSTSALDKAVSPMIDRKIPWAATFGNHDGYDWI   92 (199)
T ss_pred             HHHhhcCCCEEEECCccccCCCCch----HHHHHHHHHHHHHHHcCCCEEEECccCCCCCCC
Confidence            3456778999999999997554321    112223333211 23579999999999976643

DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP

>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain

Probab=98.41  E-value=5.9e-07  Score=66.84  Aligned_cols=54  Identities=22%  Similarity=0.396  Sum_probs=38.9

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHH---HHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDS---FTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ...+||+||++||.+. .|... .+.+|.+.   |..++.. ...+|++.++||||..+.
T Consensus        39 ~~l~PD~Vi~lGDL~D-~G~~~-~~~e~~e~l~Rf~~If~~-~~~~~~~~VpGNHDIG~~   95 (195)
T cd08166          39 NFVQPDIVIFLGDLMD-EGSIA-NDDEYYSYVQRFINIFEV-PNGTKIIYLPGDNDIGGE   95 (195)
T ss_pred             hccCCCEEEEeccccC-CCCCC-CHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCCcCCC
Confidence            4568999999999884 44432 35556664   5566642 446999999999999863

A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R

>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11

Probab=98.37  E-value=1.9e-07  Score=63.48  Aligned_cols=55  Identities=25%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      ..+.+.++|+||++||.++..+...    .....+..........+|++.++||||+..
T Consensus        25 ~~~~~~~~d~ii~~GD~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~   79 (200)
T PF00149_consen   25 EIAAENKPDFIIFLGDLVDGGNPSE----EWRAQFWFFIRLLNPKIPVYFILGNHDYYS   79 (200)
T ss_dssp             HHHHHTTTSEEEEESTSSSSSSHHH----HHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred             HHhccCCCCEEEeeccccccccccc----cchhhhccchhhhhccccccccccccccce
Confidence            3456789999999999987543321    111111001111245799999999999975

The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....

>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]

Probab=98.28  E-value=1.1e-06  Score=71.63  Aligned_cols=89  Identities=24%  Similarity=0.271  Sum_probs=59.7

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHH---HHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCc---c
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDS---FTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWL---C   80 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~---~   80 (131)
                      -.+||+++++||.| +.|-- .++++|++.   |.++|. ....+|+..++||||..+.-......     -.||.   .
T Consensus        91 ~lkPdvvffLGDLf-DeG~~-~~~eEf~~~~~RfkkIf~-~k~~~~~~~i~GNhDIGf~~~~~~~~-----i~Rfe~~fg  162 (410)
T KOG3662|consen   91 RLKPDVVFFLGDLF-DEGQW-AGDEEFKKRYERFKKIFG-RKGNIKVIYIAGNHDIGFGNELIPEW-----IDRFESVFG  162 (410)
T ss_pred             ccCCCEEEEecccc-ccCcc-CChHHHHHHHHHHHHhhC-CCCCCeeEEeCCccccccccccchhH-----HHHHHHhhc
Confidence            36899999999977 44443 367888877   557775 45789999999999998642111110     01221   2


Q ss_pred             cceEEecCCeEEEEEEeCCcCcc
Q 040839           81 SRSFILDAEIAEFVFVDTTPFVD  103 (131)
Q Consensus        81 p~~~~~~~~~v~~~~lDT~~~~~  103 (131)
                      |..-.++.+++.|+++|++.+..
T Consensus       163 ~~~r~f~v~~~tf~~~d~~~ls~  185 (410)
T KOG3662|consen  163 PTERRFDVGNLTFVMFDSNALSG  185 (410)
T ss_pred             chhhhhccCCceeEEeeehhhcC
Confidence            33444666789999999987543

>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain

Probab=98.28  E-value=7.8e-07  Score=64.63  Aligned_cols=57  Identities=32%  Similarity=0.412  Sum_probs=37.6

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHH---HHHhhcCCCC---CCCceEEeCCCcccCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLD---SFTSIYTAPS---LQKQWYNVLGNHDYRG   61 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~~~---l~~p~~~vlGNHD~~~   61 (131)
                      .+.++.+||+||++||.|.. |... ....|.+   .|.+++....   ..+|++.|+||||...
T Consensus        39 ~~i~~~~pd~vi~lGDl~d~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~  101 (171)
T cd07384          39 TALQRLKPDVVLFLGDLFDG-GRIA-DSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY  101 (171)
T ss_pred             HHHHhcCCCEEEEeccccCC-cEeC-CHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence            45567899999999998853 2221 2233443   3445554222   2689999999999975

Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit

>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain

Probab=98.26  E-value=1.8e-06  Score=61.77  Aligned_cols=55  Identities=29%  Similarity=0.291  Sum_probs=35.8

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHH---HHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLD---SFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      +.++.+||+||++||.+.. +.. ..+..|..   .|.+.+. ....+|++.++||||..+
T Consensus        33 ~i~~~~pd~vv~~GDl~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~GNHD~~~   90 (156)
T cd08165          33 SLWLLQPDVVFVLGDLFDE-GKW-STDEEWEDYVERFKKMFG-HPPDLPLHVVVGNHDIGF   90 (156)
T ss_pred             HHHhcCCCEEEECCCCCCC-Ccc-CCHHHHHHHHHHHHHHhc-cCCCCeEEEEcCCCCcCC
Confidence            3456899999999998853 222 12334433   2444442 123689999999999864

MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to

>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain

Probab=98.17  E-value=5.3e-06  Score=61.48  Aligned_cols=51  Identities=27%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      +.+.+||+|+.+||.+.......       ..+.+.+..-...+|+++++||||+...
T Consensus        28 ~~~~~~d~vl~~GD~~~~~~~~~-------~~~~~~l~~l~~~~~v~~v~GNHD~~~~   78 (223)
T cd07385          28 INALKPDLVVLTGDLVDGSVDVL-------ELLLELLKKLKAPLGVYAVLGNHDYYSG   78 (223)
T ss_pred             HhccCCCEEEEcCcccCCcchhh-------HHHHHHHhccCCCCCEEEECCCcccccC
Confidence            44578999999999886432211       1222333221235899999999999754

YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia

>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain

Probab=98.17  E-value=1.9e-06  Score=63.53  Aligned_cols=55  Identities=22%  Similarity=0.356  Sum_probs=35.4

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~   62 (131)
                      .+.+.+||+||.+||.|.....    ..+....+.+.+.. ...++|+++++||||+...
T Consensus        36 ~~~~~~~d~i~~~GD~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~   91 (223)
T cd00840          36 LAIEEKVDFVLIAGDLFDSNNP----SPEALELLIEALRRLKEAGIPVFIIAGNHDSPSR   91 (223)
T ss_pred             HHHhcCCCEEEECCcccCCCCC----CHHHHHHHHHHHHHHHHCCCCEEEecCCCCCccc
Confidence            4567799999999998854321    12222223333321 1137999999999999864

Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi

>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain

Probab=98.13  E-value=5.2e-06  Score=61.74  Aligned_cols=53  Identities=26%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHH---HHhhcCCCCC----------------CCceEEeCCCcccCC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDS---FTSIYTAPSL----------------QKQWYNVLGNHDYRG   61 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---~~~~~~~~~l----------------~~p~~~vlGNHD~~~   61 (131)
                      .-.+||.|++|||.| ++|-  .+|.+|++.   |.+++.....                ++|++.|+||||...
T Consensus        41 ~~l~Pd~V~fLGDLf-d~~w--~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~  112 (193)
T cd08164          41 FWLKPDAVVVLGDLF-SSQW--IDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY  112 (193)
T ss_pred             HhcCCCEEEEecccc-CCCc--ccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence            456899999999998 4553  367777666   4455532211                489999999999975

Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the

>PHA02546 47 endonuclease subunit; Provisional

Probab=98.12  E-value=2.8e-06  Score=67.89  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=35.1

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHH-HHhhcCCCCCCCceEEeCCCcccC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDS-FTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~-~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ..|.+++||+||++||.|-...........+... +.+..  ...++|+++++||||..
T Consensus        33 ~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L--~~~gi~v~~I~GNHD~~   89 (340)
T PHA02546         33 EYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL--KEAGITLHVLVGNHDMY   89 (340)
T ss_pred             HHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH--HHCCCeEEEEccCCCcc
Confidence            4577899999999999874332222111222222 22222  23579999999999975

>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]

Probab=98.11  E-value=2.9e-06  Score=68.59  Aligned_cols=55  Identities=24%  Similarity=0.277  Sum_probs=36.8

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~~   61 (131)
                      +.|.+.++||||..||.|- .+.++.   +-...+.+.+. ....++|+|++.||||...
T Consensus        34 ~~a~~~~vD~vliAGDlFd-~~~Ps~---~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~   89 (390)
T COG0420          34 EIAKEEKVDFVLIAGDLFD-TNNPSP---RALKLFLEALRRLKDAGIPVVVIAGNHDSPS   89 (390)
T ss_pred             HHHHHccCCEEEEcccccc-CCCCCH---HHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence            4678899999999999774 444432   22222332221 1235799999999999975

>PRK10966 exonuclease subunit SbcD; Provisional

Probab=98.07  E-value=3.5e-06  Score=68.94  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=34.6

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccCCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ..+.+.+||+||.+||.| +.+.++   ......+.+... ....++|+++|+||||....
T Consensus        33 ~~i~~~~~D~viIaGDif-D~~~p~---~~a~~~~~~~l~~L~~~~~~v~~I~GNHD~~~~   89 (407)
T PRK10966         33 EQVQEHQVDAIIVAGDIF-DTGSPP---SYARELYNRFVVNLQQTGCQLVVLAGNHDSVAT   89 (407)
T ss_pred             HHHHhcCCCEEEECCccc-cCCCCc---HHHHHHHHHHHHHHHhcCCcEEEEcCCCCChhh
Confidence            345678999999999966 444322   111122222211 12357899999999998753

>TIGR00619 sbcd exonuclease SbcD

Probab=98.05  E-value=4e-06  Score=64.39  Aligned_cols=55  Identities=20%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCC-ChHHHHHHHhhcCCCCCC-CceEEeCCCcccCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGED-DPAFLDSFTSIYTAPSLQ-KQWYNVLGNHDYRG   61 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~~~~~~~~l~-~p~~~vlGNHD~~~   61 (131)
                      ..+.+++||+||.+||.|- ...++.. ...+...+..+-   ... +|+++++||||...
T Consensus        33 ~~~~~~~~D~lli~GDi~d-~~~p~~~~~~~~~~~l~~l~---~~~~i~v~~i~GNHD~~~   89 (253)
T TIGR00619        33 EFAKAEQIDALLVAGDVFD-TANPPAEAQELFNAFFRNLS---DANPIPIVVISGNHDSAQ   89 (253)
T ss_pred             HHHHHcCCCEEEECCccCC-CCCCCHHHHHHHHHHHHHHH---hcCCceEEEEccCCCChh
Confidence            3566789999999999774 3222111 111222222221   233 99999999999864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain

Probab=98.04  E-value=7.3e-06  Score=56.90  Aligned_cols=50  Identities=28%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCccc
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDY   59 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~   59 (131)
                      ..++.+||+|+.+||.++....     .++ ..+.+.+.. ....+|++.++||||.
T Consensus        30 ~~~~~~~d~vi~~GDl~~~~~~-----~~~-~~~~~~~~~l~~~~~~~~~v~GNHD~   80 (144)
T cd07400          30 EIKALDPDLVVITGDLTQRGLP-----EEF-EEAREFLDALPAPLEPVLVVPGNHDV   80 (144)
T ss_pred             HHhccCCCEEEECCCCCCCCCH-----HHH-HHHHHHHHHccccCCcEEEeCCCCeE
Confidence            3456789999999998864311     122 223233321 1112699999999996

YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv

>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain

Probab=98.01  E-value=5.7e-06  Score=61.89  Aligned_cols=51  Identities=24%  Similarity=0.348  Sum_probs=31.8

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+.+||+||.+||.+... .   ...+|.. +.+.+.. ...++|++.++||||..
T Consensus        31 ~~~~~~d~iv~~GDl~~~~-~---~~~~~~~-~~~~~~~l~~~~~p~~~~~GNHD~~   82 (214)
T cd07399          31 AEALNIAFVLHLGDIVDDG-D---NDAEWEA-ADKAFARLDKAGIPYSVLAGNHDLV   82 (214)
T ss_pred             HHHcCCCEEEECCCccCCC-C---CHHHHHH-HHHHHHHHHHcCCcEEEECCCCcch
Confidence            4457899999999987422 1   1123333 2223221 12359999999999964

YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for

>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain

Probab=98.00  E-value=5e-06  Score=55.12  Aligned_cols=50  Identities=26%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      ..++.++++||.+||.++..+....  ..+..    ........+|++.++||||.
T Consensus        21 ~~~~~~~~~vi~~GD~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~GNHDi   70 (131)
T cd00838          21 LAAAEKPDFVLVLGDLVGDGPDPEE--VLAAA----LALLLLLGIPVYVVPGNHDI   70 (131)
T ss_pred             HhcccCCCEEEECCcccCCCCCchH--HHHHH----HHHhhcCCCCEEEeCCCceE
Confidence            3556889999999999975533211  11110    11113567999999999993

Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me

>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain

Probab=97.98  E-value=1.1e-05  Score=58.20  Aligned_cols=55  Identities=16%  Similarity=0.020  Sum_probs=34.9

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      ++.++.+||.||.+||.++.....   .+....... .......++|++.++||||..-
T Consensus        35 ~~~~~~~~d~lii~GDl~~~~~~~---~~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~~   89 (172)
T cd07391          35 RLIEEYGPERLIILGDLKHSFGGL---SRQEFEEVA-FLRLLAKDVDVILIRGNHDGGL   89 (172)
T ss_pred             HHHHhcCCCEEEEeCccccccccc---CHHHHHHHH-HHHhccCCCeEEEEcccCccch
Confidence            456678999999999999644322   122222121 1111245689999999999853

This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro

>COG1409 Icc Predicted phosphohydrolases [General function prediction only]

Probab=97.92  E-value=4.3e-05  Score=58.09  Aligned_cols=83  Identities=19%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceE-E
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSF-I   85 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~-~   85 (131)
                      ..+||+||.+||.... |.     +.-...+.+......+..|++.+|||||.+.........      ..+...... .
T Consensus        31 ~~~~D~~v~tGDl~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~~~~~~~~------~~~~~~~~~~~   98 (301)
T COG1409          31 QLKPDLLVVTGDLTND-GE-----PEEYRRLKELLARLELPAPVIVVPGNHDARVVNGEAFSD------QFFNRYAVLVG   98 (301)
T ss_pred             cCCCCEEEEccCcCCC-CC-----HHHHHHHHHHHhhccCCCceEeeCCCCcCCchHHHHhhh------hhcccCcceEe
Confidence            4678999999996532 22     222222333332235778999999999987532222211      001100111 1


Q ss_pred             ecC-CeEEEEEEeCCcC
Q 040839           86 LDA-EIAEFVFVDTTPF  101 (131)
Q Consensus        86 ~~~-~~v~~~~lDT~~~  101 (131)
                      ... +.++++.+||...
T Consensus        99 ~~~~~~~~~~~~d~~~~  115 (301)
T COG1409          99 ACSSGGWRVIGLDSSVP  115 (301)
T ss_pred             eccCCceEEEEecCCCC
Confidence            222 5789999999864

>TIGR03729 acc_ester putative phosphoesterase

Probab=97.92  E-value=3.1e-05  Score=58.63  Aligned_cols=81  Identities=16%  Similarity=0.064  Sum_probs=43.3

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCc-hhhcCccccccCCCCcccceE
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDV-EAQLSPVLTRKDSRWLCSRSF   84 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~-~aq~~~~~~~~~~~w~~p~~~   84 (131)
                      .+.++|+||.+||.+-. .      ++....++.+..  ...+|+|.++||||+.... ..+..-..   ...+......
T Consensus        29 ~~~~~d~vv~~GDl~~~-~------~~~~~~~~~l~~--~~~~pv~~v~GNHD~~~~~~~~~~~~~~---~~~~l~~~~~   96 (239)
T TIGR03729        29 KKQKIDHLHIAGDISND-F------QRSLPFIEKLQE--LKGIKVTFNAGNHDMLKDLTYEEIESND---SPLYLHNRFI   96 (239)
T ss_pred             HhcCCCEEEECCccccc-h------hhHHHHHHHHHH--hcCCcEEEECCCCCCCCCCCHHHHHhcc---chhhhccccc
Confidence            45689999999997621 1      122222222221  1458999999999986221 11111000   1112111233


Q ss_pred             EecCCeEEEEEEeC
Q 040839           85 ILDAEIAEFVFVDT   98 (131)
Q Consensus        85 ~~~~~~v~~~~lDT   98 (131)
                      .+..+.++|+.++-
T Consensus        97 ~~~~~~~~~ig~~g  110 (239)
T TIGR03729        97 DIPNTQWRIIGNNG  110 (239)
T ss_pred             ccCCCceEEEeecc
Confidence            35456789998883

Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.

>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain

Probab=97.91  E-value=5.8e-05  Score=56.33  Aligned_cols=56  Identities=20%  Similarity=0.375  Sum_probs=36.7

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCC----------------CCh-HHHHHHHhhcCCCCC-----CCceEEeCCCcccCC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGE----------------DDP-AFLDSFTSIYTAPSL-----QKQWYNVLGNHDYRG   61 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~----------------~d~-~~~~~~~~~~~~~~l-----~~p~~~vlGNHD~~~   61 (131)
                      .+.+||++|++||+||.+++...                .+. .+...+......+.+     ++|++++.-+||+..
T Consensus        26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~~  103 (228)
T cd07389          26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGD  103 (228)
T ss_pred             cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHhhcCCEEEecccccccc
Confidence            47899999999999999975321                112 222222222222222     589999999999974

PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF

>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain

Probab=97.90  E-value=2e-05  Score=56.48  Aligned_cols=48  Identities=23%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      +.+.+||+||.+||... .|-     +.-...+ +..  ..+++|++.|+||||...
T Consensus        19 ~~~~~~D~vv~~GDl~~-~~~-----~~~~~~~-~~l--~~~~~p~~~v~GNHD~~~   66 (188)
T cd07392          19 LKAEEADAVIVAGDITN-FGG-----KEAAVEI-NLL--LAIGVPVLAVPGNCDTPE   66 (188)
T ss_pred             hhccCCCEEEECCCccC-cCC-----HHHHHHH-HHH--HhcCCCEEEEcCCCCCHH
Confidence            35678999999999663 221     1111222 333  246799999999999753

PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina

>PRK11340 phosphodiesterase YaeI; Provisional

Probab=97.89  E-value=1.1e-05  Score=62.34  Aligned_cols=50  Identities=24%  Similarity=0.294  Sum_probs=30.8

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ..+.+||+|+.+||.+....  ......+.+.+...-    -..|+|+|+||||+.
T Consensus        76 i~~~~pDlVli~GD~~d~~~--~~~~~~~~~~L~~L~----~~~pv~~V~GNHD~~  125 (271)
T PRK11340         76 GIEQKPDLILLGGDYVLFDM--PLNFSAFSDVLSPLA----ECAPTFACFGNHDRP  125 (271)
T ss_pred             HHhcCCCEEEEccCcCCCCc--cccHHHHHHHHHHHh----hcCCEEEecCCCCcc
Confidence            45679999999999774211  111122333232221    137999999999985

>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain

Probab=97.78  E-value=2.8e-05  Score=55.36  Aligned_cols=47  Identities=21%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ..+.++|+|+.+||.+....     ...+.. +...   .....|+++++||||+.
T Consensus        22 ~~~~~~d~li~~GDi~~~~~-----~~~~~~-~~~~---~~~~~~v~~v~GNHD~~   68 (166)
T cd07404          22 PIAPDADILVLAGDIGYLTD-----APRFAP-LLLA---LKGFEPVIYVPGNHEFY   68 (166)
T ss_pred             CCCCCCCEEEECCCCCCCcc-----hHHHHH-HHHh---hcCCccEEEeCCCcceE
Confidence            35578999999999875321     122221 1111   13458999999999985

MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t

>TIGR00583 mre11 DNA repair protein (mre11)

Probab=97.75  E-value=3e-05  Score=63.54  Aligned_cols=58  Identities=21%  Similarity=0.378  Sum_probs=35.8

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCC-ChHHHHHHHh-----------------------hcC-----CC--CCCCceE
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGED-DPAFLDSFTS-----------------------IYT-----AP--SLQKQWY   51 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~~-----------------------~~~-----~~--~l~~p~~   51 (131)
                      ..|.++++|+||..||.|. .+.++.. --+..+.+.+                       .+.     .+  ..++|+|
T Consensus        36 ~~a~~~~vD~VLiaGDLFd-~~~Ps~~~~~~~~~~lr~~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf  114 (405)
T TIGR00583        36 QIAKEQDVDMILLGGDLFH-ENKPSRKSLYQVLRSLRLYCLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVF  114 (405)
T ss_pred             HHHHHcCCCEEEECCccCC-CCCCCHHHHHHHHHHHHHhhccCCccchhhccchhhhcccccccccccccccccCCCCEE
Confidence            4677889999999999764 4443321 1122222322                       000     01  2469999


Q ss_pred             EeCCCcccCC
Q 040839           52 NVLGNHDYRG   61 (131)
Q Consensus        52 ~vlGNHD~~~   61 (131)
                      +|.||||...
T Consensus       115 ~I~GNHD~p~  124 (405)
T TIGR00583       115 SIHGNHDDPS  124 (405)
T ss_pred             EEcCCCCCcc
Confidence            9999999975

All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.

>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain

Probab=97.65  E-value=9.5e-05  Score=56.11  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +++.++|+||.+||..... .    .++....+.+..  ..+.+|+++++||||..
T Consensus        27 ~~~~~~D~vv~~GDl~~~g-~----~~~~~~~~l~~l--~~l~~pv~~V~GNhD~~   75 (224)
T cd07388          27 APETGADAIVLIGNLLPKA-A----KSEDYAAFFRIL--GEAHLPTFYVPGPQDAP   75 (224)
T ss_pred             HhhcCCCEEEECCCCCCCC-C----CHHHHHHHHHHH--HhcCCceEEEcCCCChH
Confidence            3456899999999976521 1    233222233333  24679999999999964

This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,

>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain

Probab=97.57  E-value=0.00012  Score=55.39  Aligned_cols=44  Identities=23%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +||+||.+||.+. . ..   .......++ ..  ..+..|+|+|+||||+.
T Consensus        41 ~~D~viiaGDl~~-~-~~---~~~~~~~l~-~l--~~l~~~v~~V~GNHD~~   84 (232)
T cd07393          41 PEDIVLIPGDISW-A-MK---LEEAKLDLA-WI--DALPGTKVLLKGNHDYW   84 (232)
T ss_pred             CCCEEEEcCCCcc-C-CC---hHHHHHHHH-HH--HhCCCCeEEEeCCcccc
Confidence            8999999999762 1 11   112222222 22  13456899999999984

DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat

>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain

Probab=97.48  E-value=0.00024  Score=49.05  Aligned_cols=47  Identities=26%  Similarity=0.252  Sum_probs=28.4

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCc-eEEeCCCcccCC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQ-WYNVLGNHDYRG   61 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p-~~~vlGNHD~~~   61 (131)
                      ..++|+||.+||.+.. |.    ...+ ..+.+.+.  .+..| +++|+||||+..
T Consensus        17 ~~~~D~vi~~GD~~~~-~~----~~~~-~~~~~~l~--~~~~~~~~~v~GNHD~~~   64 (135)
T cd07379          17 IPDGDVLIHAGDLTER-GT----LEEL-QKFLDWLK--SLPHPHKIVIAGNHDLTL   64 (135)
T ss_pred             CCCCCEEEECCCCCCC-CC----HHHH-HHHHHHHH--hCCCCeEEEEECCCCCcC
Confidence            3579999999997632 11    1222 22333332  34444 578999999864

239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional

Probab=97.44  E-value=0.00016  Score=54.84  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~   60 (131)
                      .+||.|+.+||.|.. .+.+.....+...+.+.+. ....++|+|.++||||..
T Consensus        31 ~~~d~l~i~GDl~d~-~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD~~   83 (241)
T PRK05340         31 RQADALYILGDLFEA-WIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRDFL   83 (241)
T ss_pred             ccCCEEEEccceecc-ccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCchh
Confidence            579999999998842 1111111122222222221 112348999999999975

>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family

Probab=97.43  E-value=8.5e-05  Score=61.74  Aligned_cols=56  Identities=29%  Similarity=0.488  Sum_probs=35.7

Q ss_pred             hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHH---------------------HHhhcCCCCCC--CceEEeCCCcc
Q 040839            2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDS---------------------FTSIYTAPSLQ--KQWYNVLGNHD   58 (131)
Q Consensus         2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---------------------~~~~~~~~~l~--~p~~~vlGNHD   58 (131)
                      +.+.+..+.||+|.+|||.-..-.   +.-+|+-.                     |.++|...-|+  +|||.|+||||
T Consensus        92 Nal~~~~p~df~is~GD~~nn~~~---nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~v~GNHD  168 (492)
T TIGR03768        92 NDLHKRDRFDFGISLGDACNSTQY---NELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQVLGNHD  168 (492)
T ss_pred             HHhhcCCCceEEEeccccccchhH---HHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEEeecCCc
Confidence            345678899999999998742100   11122211                     22455444566  99999999999


Q ss_pred             cC
Q 040839           59 YR   60 (131)
Q Consensus        59 ~~   60 (131)
                      .-
T Consensus       169 ~~  170 (492)
T TIGR03768       169 HF  170 (492)
T ss_pred             cc
Confidence            74

This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase

Probab=97.39  E-value=0.00021  Score=53.91  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~   60 (131)
                      +||+|+.+||.|. ..+.......+.+.+.+.+. .....+|+|+++||||..
T Consensus        30 ~~d~lii~GDi~d-~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~   81 (231)
T TIGR01854        30 KADALYILGDLFE-AWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL   81 (231)
T ss_pred             cCCEEEEcCceec-cccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence            7999999999874 21111111122222222221 012358999999999975

This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.

>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain

Probab=97.37  E-value=0.00026  Score=54.26  Aligned_cols=45  Identities=29%  Similarity=0.214  Sum_probs=30.2

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      ..++.+||+||++||..-       ...+   .++.+   ..+..|+|.++||||+..
T Consensus        20 ~l~~~~pD~Vl~~GDi~~-------~~~~---~~~~l---~~l~~p~~~V~GNHD~~~   64 (238)
T cd07397          20 ALHLLQPDLVLFVGDFGN-------ESVQ---LVRAI---SSLPLPKAVILGNHDAWY   64 (238)
T ss_pred             HHhccCCCEEEECCCCCc-------ChHH---HHHHH---HhCCCCeEEEcCCCcccc
Confidence            345678999999999641       1111   12222   245689999999999864

DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy

>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related

Probab=97.35  E-value=0.00025  Score=53.75  Aligned_cols=51  Identities=22%  Similarity=0.155  Sum_probs=32.9

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ++.++.+|+.||.+||.++..+..    ..+. .+.+...  .+..+++.|+||||-.
T Consensus        52 ~li~~~~~d~vIi~GDl~h~~~~~----~~~~-~~~~~l~--~~~~~v~~V~GNHD~~  102 (225)
T TIGR00024        52 SIADKYGIEALIINGDLKHEFKKG----LEWR-FIREFIE--VTFRDLILIRGNHDAL  102 (225)
T ss_pred             HHHhhcCCCEEEEcCccccccCCh----HHHH-HHHHHHH--hcCCcEEEECCCCCCc
Confidence            345677899999999998644321    1121 1222332  2457999999999963

Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.

>COG1408 Predicted phosphohydrolases [General function prediction only]

Probab=97.23  E-value=0.00028  Score=55.35  Aligned_cols=53  Identities=26%  Similarity=0.284  Sum_probs=32.7

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchh
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA   65 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~a   65 (131)
                      +..||+|+.+||++.....  .....    +.+.+..-....++|++.|||||......
T Consensus        71 ~~~~DlivltGD~~~~~~~--~~~~~----~~~~L~~L~~~~gv~av~GNHd~~~~~~~  123 (284)
T COG1408          71 NELPDLIVLTGDYVDGDRP--PGVAA----LALFLAKLKAPLGVFAVLGNHDYGVDRSN  123 (284)
T ss_pred             hcCCCEEEEEeeeecCCCC--CCHHH----HHHHHHhhhccCCEEEEeccccccccccc
Confidence            3457999999998853111  12222    33333221235789999999999865433

>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]

Probab=97.21  E-value=0.00063  Score=52.03  Aligned_cols=56  Identities=21%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .++.+..+|+-+|.+||+.+.-+.+......+...|.+.+...    -|..+.||||-..
T Consensus        56 ~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~----evi~i~GNHD~~i  111 (235)
T COG1407          56 DRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER----EVIIIRGNHDNGI  111 (235)
T ss_pred             HHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC----cEEEEeccCCCcc
Confidence            3467788999999999999888776555555555566655422    4999999999764

>PRK09453 phosphodiesterase; Provisional

Probab=97.19  E-value=0.00062  Score=49.39  Aligned_cols=50  Identities=20%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCC----CChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGE----DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~----~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++.+||.|+.+||.+. .|....    .++.  +.+ +.+  ..+..+++.|+||||..
T Consensus        23 ~~~~~~d~ii~lGDi~~-~~~~~~~~~~~~~~--~~~-~~l--~~~~~~v~~V~GNhD~~   76 (182)
T PRK09453         23 FAQSGADWLVHLGDVLY-HGPRNPLPEGYAPK--KVA-ELL--NAYADKIIAVRGNCDSE   76 (182)
T ss_pred             HHhcCCCEEEEcccccc-cCcCCCCccccCHH--HHH-HHH--HhcCCceEEEccCCcch
Confidence            34578999999999774 232111    1111  112 222  13457899999999974

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain

Probab=97.16  E-value=0.00032  Score=51.68  Aligned_cols=54  Identities=26%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             cCCCEEEEcCCccCCC-CCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            8 LEIDFVISTGDNFYED-GLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~-G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .+|+.||.+||.|-.. +............+..........++++.++||||...
T Consensus        29 ~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD~~~   83 (217)
T cd07398          29 GEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHDFLL   83 (217)
T ss_pred             CCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCchHHH
Confidence            5899999999988421 11111111111111222211235689999999999853

YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []

Probab=97.12  E-value=0.00043  Score=48.02  Aligned_cols=37  Identities=41%  Similarity=0.546  Sum_probs=22.0

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .+||+|+.+||.+-+        .++.+    .+.  .+  |+++++||||..
T Consensus        24 ~~~d~vi~~GDi~~~--------~~~~~----~~~--~~--~~~~v~GNHD~~   60 (156)
T PF12850_consen   24 NEPDFVIILGDIFDP--------EEVLE----LLR--DI--PVYVVRGNHDNW   60 (156)
T ss_dssp             TTESEEEEES-SCSH--------HHHHH----HHH--HH--EEEEE--CCHST
T ss_pred             cCCCEEEECCCchhH--------HHHHH----HHh--cC--CEEEEeCCcccc
Confidence            579999999996531        22222    221  12  999999999963

; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain

Probab=97.09  E-value=0.0011  Score=50.25  Aligned_cols=55  Identities=15%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCC--------hHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDD--------PAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d--------~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      .+++.||.+||.+-..+.....+        .+....+.+.+..-.-.+|++.++||||....
T Consensus        34 ~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~v~~ipGNHD~~~~   96 (243)
T cd07386          34 SRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSHIKIIIIPGNHDAVRQ   96 (243)
T ss_pred             cCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccCCeEEEeCCCCCcccc
Confidence            36799999999874322100000        11112233444311124899999999998643

The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera

>TIGR00040 yfcE phosphoesterase, MJ0936 family

Probab=96.99  E-value=0.0015  Score=46.17  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             hhc-CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            6 EKL-EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         6 ~~~-~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.. +||.|+.+||.+         +...   ++.+.   .+..|++.|+||||..
T Consensus        24 ~~~~~~d~ii~~GD~~---------~~~~---~~~l~---~~~~~~~~V~GN~D~~   64 (158)
T TIGR00040        24 NLESNVDLVIHAGDLT---------SPFV---LKEFE---DLAAKVIAVRGNNDGE   64 (158)
T ss_pred             hhccCCCEEEEcCCCC---------CHHH---HHHHH---HhCCceEEEccCCCch
Confidence            344 899999999965         1222   22111   2456899999999974

Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.

>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family

Probab=96.98  E-value=0.00031  Score=58.72  Aligned_cols=22  Identities=45%  Similarity=0.848  Sum_probs=17.2

Q ss_pred             hhcCCCCCCCceEEeCCCcccC
Q 040839           39 SIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        39 ~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++..+-|++|||.|+||||.-
T Consensus       175 ~p~~a~Gl~~Pwy~v~GNHD~~  196 (496)
T TIGR03767       175 APVTSPGLDLPWYSVFGNHDDL  196 (496)
T ss_pred             CcccccCcCCceeeeccCCccc
Confidence            4444456789999999999974

This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.

>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain

Probab=96.84  E-value=0.0011  Score=47.58  Aligned_cols=43  Identities=21%  Similarity=0.091  Sum_probs=28.1

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .++|.|+.+||.+... .    .+..    .+.+  ..++.|++.|+||||...
T Consensus        41 ~~~d~vi~~GDl~~~~-~----~~~~----~~~l--~~~~~~~~~v~GNHD~~~   83 (168)
T cd07390          41 GPDDTVYHLGDFSFGG-K----AGTE----LELL--SRLNGRKHLIKGNHDSSL   83 (168)
T ss_pred             CCCCEEEEeCCCCCCC-C----hHHH----HHHH--HhCCCCeEEEeCCCCchh
Confidence            3689999999976432 2    1121    1222  135679999999999764

This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain

Probab=96.78  E-value=0.0016  Score=45.65  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=25.4

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      +|.|+.+||.... +...    .           .....|++.|+||||...
T Consensus        25 ~d~ii~~GD~~~~-~~~~----~-----------~~~~~~~~~V~GNhD~~~   60 (155)
T cd00841          25 VDLIIHAGDVLYP-GPLN----E-----------LELKAPVIAVRGNCDGEV   60 (155)
T ss_pred             CCEEEECCccccc-cccc----h-----------hhcCCcEEEEeCCCCCcC
Confidence            9999999996642 2211    1           123579999999999864

YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph

>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A

Probab=96.64  E-value=0.002  Score=49.34  Aligned_cols=51  Identities=24%  Similarity=0.241  Sum_probs=27.0

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHH-------------------------HHHHhhcCCCCCCCceEEeCCCcc
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFL-------------------------DSFTSIYTAPSLQKQWYNVLGNHD   58 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~-------------------------~~~~~~~~~~~l~~p~~~vlGNHD   58 (131)
                      ++++.+||.||++||..-.. .   ....|.                         ..|.+.+  ..+++|++.+|||||
T Consensus        27 ~~~e~~~D~~v~~G~~~~~~-a---~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L--~~~~~p~~~vPG~~D  100 (255)
T PF14582_consen   27 VIPEKGPDAVVFVGDLLKAE-A---RSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL--GELGVPVFVVPGNMD  100 (255)
T ss_dssp             HHHHHT-SEEEEES-SS-TC-H---HHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH--HCC-SEEEEE--TTS
T ss_pred             hccccCCCEEEEeccccccc-h---hhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH--HhcCCcEEEecCCCC
Confidence            45677999999999975221 1   112232                         0122232  357899999999999


Q ss_pred             cC
Q 040839           59 YR   60 (131)
Q Consensus        59 ~~   60 (131)
                      -.
T Consensus       101 ap  102 (255)
T PF14582_consen  101 AP  102 (255)
T ss_dssp             -S
T ss_pred             ch
Confidence            84

>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain

Probab=96.34  E-value=0.0078  Score=41.51  Aligned_cols=38  Identities=32%  Similarity=0.475  Sum_probs=24.9

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      +.++|.++++||..        . .. ...+.+.     ...|++.|+||||.
T Consensus        20 ~~~~d~ii~~GD~~--------~-~~-~~~~~~~-----~~~~~~~V~GN~D~   57 (129)
T cd07403          20 LEGVDLILSAGDLP--------K-EY-LEYLVTM-----LNVPVYYVHGNHDV   57 (129)
T ss_pred             CCCCCEEEECCCCC--------h-HH-HHHHHHH-----cCCCEEEEeCCCcc
Confidence            47799999999941        1 11 1112221     24689999999994

TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain

Probab=96.32  E-value=0.0039  Score=46.55  Aligned_cols=49  Identities=20%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~   60 (131)
                      .+.|.+|++||.+ +.|..+   .+....+.+... ....+.+++.++||||..
T Consensus        31 ~~~d~lv~lGD~v-drG~~~---~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~   80 (208)
T cd07425          31 GGSTHLVQLGDIF-DRGPDV---IEILWLLYKLEQEAAKAGGKVHFLLGNHELM   80 (208)
T ss_pred             CCCcEEEEECCCc-CCCcCH---HHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence            4689999999987 344322   122222222211 112357899999999975

This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal

>PHA02239 putative protein phosphatase

Probab=96.25  E-value=0.0045  Score=47.22  Aligned_cols=45  Identities=24%  Similarity=0.345  Sum_probs=27.6

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.|.+|++||.+ +.|..+   .   +.++.+.....-..++++++||||..
T Consensus        29 ~~d~li~lGD~i-DrG~~s---~---~v~~~l~~~~~~~~~~~~l~GNHE~~   73 (235)
T PHA02239         29 PEETIVFLGDYV-DRGKRS---K---DVVNYIFDLMSNDDNVVTLLGNHDDE   73 (235)
T ss_pred             CCCEEEEecCcC-CCCCCh---H---HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence            369999999987 445432   1   22333322111235799999999963

>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B

Probab=96.17  E-value=0.0024  Score=52.74  Aligned_cols=59  Identities=29%  Similarity=0.568  Sum_probs=24.8

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCCC------------------CCCh-HHHHHHHhhcCCCCC-----CCceEEeCCCcc
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLTG------------------EDDP-AFLDSFTSIYTAPSL-----QKQWYNVLGNHD   58 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~~------------------~~d~-~~~~~~~~~~~~~~l-----~~p~~~vlGNHD   58 (131)
                      .++++.+|||+|++||+||.++...                  .... .+...+.+....+.+     ++|++++.=.||
T Consensus       126 ~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHd  205 (453)
T PF09423_consen  126 RIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHD  205 (453)
T ss_dssp             HHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STT
T ss_pred             hhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCce
Confidence            4555578999999999999986300                  0111 111122222222222     489999999999


Q ss_pred             cCC
Q 040839           59 YRG   61 (131)
Q Consensus        59 ~~~   61 (131)
                      +..
T Consensus       206 i~n  208 (453)
T PF09423_consen  206 IGN  208 (453)
T ss_dssp             TST
T ss_pred             ecc
Confidence            863

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain

Probab=96.15  E-value=0.0084  Score=43.70  Aligned_cols=39  Identities=21%  Similarity=0.207  Sum_probs=26.1

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.++|.|+.+||.+.         +.....++      .+..|+++|.||||+.
T Consensus        27 ~~~~d~iih~GDi~~---------~~~~~~l~------~~~~~~~~V~GN~D~~   65 (178)
T cd07394          27 PGKIQHVLCTGNLCS---------KETYDYLK------TIAPDVHIVRGDFDEN   65 (178)
T ss_pred             cCCCCEEEECCCCCC---------HHHHHHHH------hhCCceEEEECCCCcc
Confidence            356999999999753         11111121      2345899999999975

Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl

>PRK04036 DNA polymerase II small subunit; Validated

Probab=96.13  E-value=0.0074  Score=50.86  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=32.9

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCC-----ChHHH---HHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGED-----DPAFL---DSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~-----d~~~~---~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ..+++.+|.+||.+-..|.....     .+...   ..+.+.+..-.-.+|++.+|||||....
T Consensus       282 ~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~  345 (504)
T PRK04036        282 ASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQIPEDIKIIISPGNHDAVRQ  345 (504)
T ss_pred             hhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhhhcCCeEEEecCCCcchhh
Confidence            56799999999998544432111     11111   1233333211124899999999998643

>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain

Probab=95.80  E-value=0.0062  Score=47.14  Aligned_cols=42  Identities=29%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.|.++++||.+ ..|..+      .+.++.+..   ++..+..|+||||..
T Consensus        26 ~~D~Li~lGDlV-dRGp~s------~evl~~l~~---l~~~v~~VlGNHD~~   67 (257)
T cd07422          26 AKDRLWLVGDLV-NRGPDS------LETLRFVKS---LGDSAKTVLGNHDLH   67 (257)
T ss_pred             CCCEEEEecCcC-CCCcCH------HHHHHHHHh---cCCCeEEEcCCchHH
Confidence            579999999987 445432      133444432   445788999999974

ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa

>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]

Probab=95.69  E-value=0.0084  Score=51.09  Aligned_cols=56  Identities=29%  Similarity=0.479  Sum_probs=31.9

Q ss_pred             hhhhcC-CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC--CCCC-CCceEEeCCCcccC
Q 040839            4 IGEKLE-IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT--APSL-QKQWYNVLGNHDYR   60 (131)
Q Consensus         4 ~~~~~~-~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~--~~~l-~~p~~~vlGNHD~~   60 (131)
                      +.+..+ +|+|+.+||+.-+. +-......-.....+++.  .+.+ ++|+|.++||||-.
T Consensus       204 ike~~~~iD~I~wTGD~~~H~-~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~  263 (577)
T KOG3770|consen  204 IKENHKDIDYIIWTGDNVAHD-VWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIH  263 (577)
T ss_pred             HHhcCCCCCEEEEeCCCCccc-chhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCC
Confidence            344455 99999999988554 211111111111222221  0233 59999999999985

>PRK00166 apaH diadenosine tetraphosphatase; Reviewed

Probab=95.64  E-value=0.013  Score=45.80  Aligned_cols=43  Identities=30%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .+.|.++++||.+ ..|..+      .+.++.+.   .++.++++|+||||..
T Consensus        27 ~~~D~li~lGDlV-drGp~s------~~vl~~l~---~l~~~~~~VlGNHD~~   69 (275)
T PRK00166         27 PAKDTLWLVGDLV-NRGPDS------LEVLRFVK---SLGDSAVTVLGNHDLH   69 (275)
T ss_pred             CCCCEEEEeCCcc-CCCcCH------HHHHHHHH---hcCCCeEEEecChhHH
Confidence            3579999999987 345432      13344443   2456799999999983

>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain

Probab=95.59  E-value=0.026  Score=43.79  Aligned_cols=50  Identities=22%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCCh------H---HHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDP------A---FLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~------~---~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      .++|+||..||-.-   ..+.+|.      +   -...|.+.+.. ...++|++.|.||||-.
T Consensus        27 ~~~D~lI~~GDf~~---~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~   86 (262)
T cd00844          27 TKVDLLICCGDFQA---VRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEAS   86 (262)
T ss_pred             CCCcEEEEcCCCCC---cCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCH
Confidence            46999999999532   2222221      1   11225455543 23578899999999953

Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s

>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain

Probab=95.47  E-value=0.017  Score=42.74  Aligned_cols=46  Identities=20%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .+++.+|++||.+ +.|..+      .+.++.+........+++++.||||..
T Consensus        23 ~~~d~li~lGD~v-drg~~~------~~~l~~l~~~~~~~~~~~~l~GNHe~~   68 (225)
T cd00144          23 PPNDKLIFLGDYV-DRGPDS------VEVIDLLLALKILPDNVILLRGNHEDM   68 (225)
T ss_pred             CCCCEEEEECCEe-CCCCCc------HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence            4689999999977 344322      233332222111156899999999985

The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate

>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain

Probab=95.25  E-value=0.019  Score=43.20  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=27.4

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.+.+|++||.+ +.|..+.      +.++.+.... -+-.++.+.||||..
T Consensus        33 ~~d~lvflGD~I-DRGp~S~------~vl~~l~~l~-~~~~~~~l~GNHE~~   76 (222)
T cd07413          33 PERQVVFLGDLI-DRGPEIR------ELLEIVKSMV-DAGHALAVMGNHEFN   76 (222)
T ss_pred             CCCEEEEeCccc-CCCCCHH------HHHHHHHHhh-cCCCEEEEEccCcHH
Confidence            467999999987 5555431      2333333211 123688999999974

PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of

>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]

Probab=95.07  E-value=0.015  Score=49.30  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             hhhhhcCCCEEEEcCCccCCCCCC
Q 040839            3 LIGEKLEIDFVISTGDNFYEDGLT   26 (131)
Q Consensus         3 ~~~~~~~~d~vv~~GDn~Y~~G~~   26 (131)
                      .+|+++++|+|+.-||.|+.+-++
T Consensus        46 ~iA~e~~VDmiLlGGDLFHeNkPS   69 (646)
T KOG2310|consen   46 EIAQENDVDMILLGGDLFHENKPS   69 (646)
T ss_pred             HHHHhcCCcEEEecCcccccCCcc
Confidence            578899999999999999876443

>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain

Probab=94.44  E-value=0.047  Score=40.37  Aligned_cols=41  Identities=27%  Similarity=0.299  Sum_probs=26.8

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++|.++++||.+. .|..+      .+.++.+..     .+++++.||||..
T Consensus        27 ~~~d~~~~~GD~v~-~g~~~------~~~~~~l~~-----~~~~~v~GNhe~~   67 (207)
T cd07424          27 PARDRLISVGDLID-RGPES------LACLELLLE-----PWFHAVRGNHEQM   67 (207)
T ss_pred             CCCCEEEEeCCccc-CCCCH------HHHHHHHhc-----CCEEEeECCChHH
Confidence            35899999999873 34321      233433321     3689999999965

PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all

>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional

Probab=94.22  E-value=0.044  Score=41.83  Aligned_cols=42  Identities=21%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      .|.+|++||.+ +.|..+.      +.++.+... .....++++.||||.
T Consensus        37 ~d~li~lGDli-DRGp~S~------~vl~~~~~~-~~~~~~~~l~GNHE~   78 (245)
T PRK13625         37 QRKLAFVGDLT-DRGPHSL------RMIEIVWEL-VEKKAAYYVPGNHCN   78 (245)
T ss_pred             CCEEEEECccc-CCCcChH------HHHHHHHHH-hhCCCEEEEeCccHH
Confidence            47899999988 5565432      233323221 123579999999985

>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain

Probab=93.88  E-value=0.051  Score=41.03  Aligned_cols=43  Identities=21%  Similarity=0.203  Sum_probs=26.5

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      +.|.+|++||.+ +.|..+      .+.++.+... ..+..++.+.||||.
T Consensus        37 ~~d~lv~lGDlI-DrG~~s------~evl~~l~~l-~~~~~~~~v~GNHE~   79 (234)
T cd07423          37 EGRRAVFVGDLV-DRGPDS------PEVLRLVMSM-VAAGAALCVPGNHDN   79 (234)
T ss_pred             CCCEEEEECCcc-CCCCCH------HHHHHHHHHH-hhCCcEEEEECCcHH
Confidence            368999999988 345432      1333333211 012358899999997

PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp

>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical)

Probab=93.83  E-value=0.039  Score=43.32  Aligned_cols=41  Identities=32%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      +.|-++++||.+ ..|..+.      +.++.+.   +++..+..|+||||.
T Consensus        28 ~~D~l~~lGDlV-dRGP~sl------evL~~l~---~l~~~~~~VlGNHD~   68 (279)
T TIGR00668        28 GQDTLWLTGDLV-ARGPGSL------EVLRYVK---SLGDAVRLVLGNHDL   68 (279)
T ss_pred             CCCEEEEeCCcc-CCCCCHH------HHHHHHH---hcCCCeEEEEChhHH
Confidence            468999999987 4455321      2233332   233456789999997

Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.

>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional

Probab=93.73  E-value=0.048  Score=40.80  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=25.0

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      +.|-++++||.+ +.|..+    .  +.++.+..     ..++.++||||.
T Consensus        44 ~~D~li~lGDlv-DrGp~s----~--~vl~~l~~-----~~~~~v~GNHE~   82 (218)
T PRK11439         44 WRDLLISVGDLI-DRGPQS----L--RCLQLLEE-----HWVRAVRGNHEQ   82 (218)
T ss_pred             ccCEEEEcCccc-CCCcCH----H--HHHHHHHc-----CCceEeeCchHH
Confidence            578999999988 445432    1  23333321     235789999995

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.35  E-value=0.074  Score=40.78  Aligned_cols=50  Identities=26%  Similarity=0.466  Sum_probs=29.6

Q ss_pred             CCCEEEEcCCccCCCCCCCCC-ChHHHHHHH-hhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGED-DPAFLDSFT-SIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~-~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.|.+..+||.|-  |-...+ -++..+... .+.....-..|+|.++||||..
T Consensus        29 ~ad~lyilGDifd--~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl   80 (237)
T COG2908          29 QADALYILGDIFD--GWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL   80 (237)
T ss_pred             cCcEEEEechhhh--hhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence            3489999999873  222222 223333322 2221113358999999999974

>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain

Probab=93.35  E-value=0.13  Score=39.44  Aligned_cols=49  Identities=16%  Similarity=0.250  Sum_probs=26.7

Q ss_pred             cCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            8 LEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ..++ ++|..||.+-..........+  . ..+.+.  .++. -++++||||+..+
T Consensus        36 ~~~~~l~l~~GD~~~g~~~~~~~~g~--~-~~~~l~--~l~~-d~~~~GNHefd~g   85 (257)
T cd07406          36 ENPNTLVLFSGDVLSPSLLSTATKGK--Q-MVPVLN--ALGV-DLACFGNHEFDFG   85 (257)
T ss_pred             cCCCEEEEECCCccCCccchhhcCCc--c-HHHHHH--hcCC-cEEeecccccccC
Confidence            3466 899999988544332211111  1 112221  2333 3678999999643

CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th

>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]

Probab=92.89  E-value=0.17  Score=38.53  Aligned_cols=52  Identities=17%  Similarity=0.179  Sum_probs=32.2

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHH--HhhcCCCCCCCceEEeCCCcccCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSF--TSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~--~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .++..++|++|..||..|-.    ..++.-....  ....  ....+|++++|||-|-..
T Consensus        25 ~~~~~~~D~lviaGDlt~~~----~~~~~~~~~~~~~e~l--~~~~~~v~avpGNcD~~~   78 (226)
T COG2129          25 AAADIRADLLVIAGDLTYFH----FGPKEVAEELNKLEAL--KELGIPVLAVPGNCDPPE   78 (226)
T ss_pred             HHhhccCCEEEEecceehhh----cCchHHHHhhhHHHHH--HhcCCeEEEEcCCCChHH
Confidence            45566899999999987311    1222221111  1111  246799999999999764

>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain

Probab=92.82  E-value=0.1  Score=41.40  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=25.1

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCC--CCceEEeCCCcccC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSL--QKQWYNVLGNHDYR   60 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l--~~p~~~vlGNHD~~   60 (131)
                      .+.+|++||.+ +.|..+.      ..++.+......  ...+..+.||||..
T Consensus        35 ~~~iVfLGDyV-DRGPdS~------eVld~L~~l~~~~~~~~vv~LrGNHE~~   80 (304)
T cd07421          35 SALVIFLGDYC-DRGPETR------KVIDFLISLPEKHPKQRHVFLCGNHDFA   80 (304)
T ss_pred             CcEEEEeCCcC-CCCCCHH------HHHHHHHHhhhcccccceEEEecCChHH
Confidence            56899999977 4554321      223222211111  12578899999954

Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol

>COG1768 Predicted phosphohydrolase [General function prediction only]

Probab=92.81  E-value=0.11  Score=38.74  Aligned_cols=45  Identities=31%  Similarity=0.433  Sum_probs=28.9

Q ss_pred             CCCEEEEcCCccCCCCCCCC-CChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            9 EIDFVISTGDNFYEDGLTGE-DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~-~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      +=|.|+..||.=..--++.. .|-+|-         ..|+..=|++-|||||+..
T Consensus        43 ~eDiVllpGDiSWaM~l~ea~~Dl~~i---------~~LPG~K~m~rGNHDYWw~   88 (230)
T COG1768          43 PEDIVLLPGDISWAMRLEEAEEDLRFI---------GDLPGTKYMIRGNHDYWWS   88 (230)
T ss_pred             hhhEEEecccchhheechhhhhhhhhh---------hcCCCcEEEEecCCccccc
Confidence            34788999996543323211 122221         3578889999999999865

>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain

Probab=92.49  E-value=0.07  Score=41.10  Aligned_cols=51  Identities=16%  Similarity=0.137  Sum_probs=26.6

Q ss_pred             cCCCEEEE-cCCccCCCCCCCCCC---h-HHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            8 LEIDFVIS-TGDNFYEDGLTGEDD---P-AFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d~vv~-~GDn~Y~~G~~~~~d---~-~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ..|+.++. .||.|..+..++...   . +... .-+.+.  .++. -++++||||+..+
T Consensus        42 ~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~-~~~~ln--~~g~-d~~~lGNHe~d~g   97 (277)
T cd07410          42 ENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHP-MIAAMN--ALGY-DAGTLGNHEFNYG   97 (277)
T ss_pred             cCCCeEEEeCCccCCccHHHHHhhhcccCCCCh-HHHHHH--hcCC-CEEeecccCcccC
Confidence            45777665 999986554322110   0 0001 112221  2333 4778899999754

CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos

>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain

Probab=92.37  E-value=0.22  Score=37.51  Aligned_cols=49  Identities=16%  Similarity=0.187  Sum_probs=27.1

Q ss_pred             cCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            8 LEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ..|+ ++|.+||.+.+.......  .... ..+.+.  .+ ..-++++||||+..+
T Consensus        35 ~~~~~l~v~~GD~~~~~~~~~~~--~~~~-~~~~l~--~~-g~d~~~~GNHe~d~g   84 (252)
T cd00845          35 ENENTLLLDAGDNFDGSPPSTAT--KGEA-NIELMN--AL-GYDAVTIGNHEFDYG   84 (252)
T ss_pred             cCCCeEEEeCCccCCCccchhcc--CCcH-HHHHHH--hc-CCCEEeecccccccc
Confidence            3467 779999998655443211  1111 112221  22 345678999999753

This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich

>COG0622 Predicted phosphoesterase [General function prediction only]

Probab=91.80  E-value=0.23  Score=36.20  Aligned_cols=41  Identities=27%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ...++|+||.+||...+.     ....    ++.     .+..++++|-||.|..
T Consensus        25 ~~~~~d~vih~GD~~~~~-----~~~~----l~~-----~~~~~i~~V~GN~D~~   65 (172)
T COG0622          25 NLEKVDAVIHAGDSTSPF-----TLDA----LEG-----GLAAKLIAVRGNCDGE   65 (172)
T ss_pred             hhcCCCEEEECCCcCCcc-----chHH----hhc-----ccccceEEEEccCCCc
Confidence            346899999999976422     1112    111     1568999999999986

>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]

Probab=90.90  E-value=0.24  Score=36.03  Aligned_cols=42  Identities=26%  Similarity=0.179  Sum_probs=27.3

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      =|.+.++||..-     ..++.+   ....+.  +.|+....+|+||||-.+
T Consensus        46 ~D~lwhLGDl~~-----~~n~~~---~a~~Il--erLnGrkhlv~GNhDk~~   87 (186)
T COG4186          46 DDVLWHLGDLSS-----GANRER---AAGLIL--ERLNGRKHLVPGNHDKCH   87 (186)
T ss_pred             cceEEEeccccc-----ccchhh---HHHHHH--HHcCCcEEEeeCCCCCCc
Confidence            467889999542     223322   233443  357788899999999865

>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain

Probab=90.76  E-value=0.41  Score=34.13  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=29.9

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcc
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHD   58 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD   58 (131)
                      ++.++|++|.+||-|-..   . .+    ..|...+.. ....+|.|.+-|||.
T Consensus        23 k~gpFd~~ic~Gdff~~~---~-~~----~~~~~y~~g~~~~pipTyf~ggn~~   68 (150)
T cd07380          23 KKGPFDALLCVGDFFGDD---E-DD----EELEAYKDGSKKVPIPTYFLGGNNP   68 (150)
T ss_pred             ccCCeeEEEEecCccCCc---c-ch----hhHHHHhcCCccCCCCEEEECCCCC
Confidence            345799999999966211   1 11    235445533 356799999999995

CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site

>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional

Probab=90.38  E-value=0.3  Score=36.64  Aligned_cols=40  Identities=33%  Similarity=0.484  Sum_probs=25.5

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      .+.|.++++||.+. .|..+      .+.++.+..     -.++.+.||||.
T Consensus        41 ~~~d~l~~lGD~vd-rG~~~------~~~l~~l~~-----~~~~~v~GNHE~   80 (218)
T PRK09968         41 PETDLLISVGDNID-RGPES------LNVLRLLNQ-----PWFISVKGNHEA   80 (218)
T ss_pred             CCCCEEEECCCCcC-CCcCH------HHHHHHHhh-----CCcEEEECchHH
Confidence            36799999999873 44432      123332221     246789999997

>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain

Probab=90.22  E-value=0.27  Score=37.54  Aligned_cols=48  Identities=17%  Similarity=0.254  Sum_probs=27.0

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ++.+++..||+|-..........  .. .-+.+.  .+..-+ +++||||+..+
T Consensus        37 ~~~l~l~~GD~~~gs~~~~~~~g--~~-~~~~ln--~~g~d~-~~~GNHefd~G   84 (257)
T cd07408          37 DNDLLVDAGDAIQGLPISDLDKG--ET-IIKIMN--AVGYDA-VTPGNHEFDYG   84 (257)
T ss_pred             CCEEEEeCCCcCCCchhhhhcCC--cH-HHHHHH--hcCCcE-EccccccccCC
Confidence            57899999999854433221111  11 112221  344455 57899999754

SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet

>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]

Probab=90.22  E-value=0.19  Score=42.23  Aligned_cols=22  Identities=50%  Similarity=0.587  Sum_probs=19.2

Q ss_pred             hhhcCCCEEEEcCCccCCCCCC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLT   26 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~   26 (131)
                      ..+++|||||++||.||..|..
T Consensus       164 ma~~~~D~viH~GDyIYeyg~~  185 (522)
T COG3540         164 MAKEEPDFVIHLGDYIYEYGPI  185 (522)
T ss_pred             HHhcCCCEEEEcCCeeeccCCc
Confidence            4567799999999999998875

>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain

Probab=88.67  E-value=0.26  Score=37.83  Aligned_cols=47  Identities=9%  Similarity=0.098  Sum_probs=25.5

Q ss_pred             CCCEE-EEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            9 EIDFV-ISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         9 ~~d~v-v~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      .++.+ +..||.+..++.+...  +... .-+.+.  .  +++.++.||||+..+
T Consensus        50 ~~~~l~l~~GD~~~gs~~~~~~--~g~~-~~~~l~--~--~g~da~~GNHefd~g   97 (264)
T cd07411          50 NPNTLLLDGGDTWQGSGEALYT--RGQA-MVDALN--A--LGVDAMVGHWEFTYG   97 (264)
T ss_pred             CCCeEEEeCCCccCCChHHhhc--CChh-HHHHHH--h--hCCeEEecccccccC
Confidence            68876 6799998655432111  1111 112221  1  555555599999854

SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy

>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain

Probab=85.61  E-value=1  Score=35.07  Aligned_cols=46  Identities=15%  Similarity=0.181  Sum_probs=28.3

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      .+.+.+|++||-+ +.|..+      .+.+..++.. ...+-.++.+.||||..
T Consensus        53 ~~~~~~vfLGD~V-DrG~~s------~e~l~~l~~lk~~~p~~v~llrGNHE~~   99 (271)
T smart00156       53 PPDTNYVFLGDYV-DRGPFS------IEVILLLFALKILYPNRVVLLRGNHESR   99 (271)
T ss_pred             CCCceEEEeCCcc-CCCCCh------HHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence            3467899999976 555533      2333333211 12235689999999985

Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.

>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain

Probab=85.40  E-value=2  Score=33.26  Aligned_cols=47  Identities=30%  Similarity=0.523  Sum_probs=28.2

Q ss_pred             hhhcCCCEEEEcCCccCCC-CCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            5 GEKLEIDFVISTGDNFYED-GLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~-G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      -++.++||+|..|||+-.. |++    +..   .+.+.   .+.+- .+++|||+|..+
T Consensus        25 k~~~~~D~vi~NgEn~~gg~gl~----~~~---~~~L~---~~G~D-~iTlGNH~fD~g   72 (255)
T cd07382          25 KKEYKIDFVIANGENAAGGKGIT----PKI---AKELL---SAGVD-VITMGNHTWDKK   72 (255)
T ss_pred             HHHCCCCEEEECCccccCCCCCC----HHH---HHHHH---hcCCC-EEEecccccCcc
Confidence            3466899999999998542 332    222   22222   23333 556799999754

DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.

>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain

Probab=84.20  E-value=1.2  Score=35.71  Aligned_cols=43  Identities=14%  Similarity=0.155  Sum_probs=26.0

Q ss_pred             CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCC-CCCCceEEeCCCcccC
Q 040839           11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAP-SLQKQWYNVLGNHDYR   60 (131)
Q Consensus        11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~-~l~~p~~~vlGNHD~~   60 (131)
                      +..|++||-+ +.|..+.      +.+.-++... ..+-.++++.|||+..
T Consensus        80 ~~~lFLGDyV-DRG~~s~------Evl~ll~~lk~~~p~~v~llRGNHE~~  123 (321)
T cd07420          80 NPYVFNGDFV-DRGKRSI------EILIILFAFFLVYPNEVHLNRGNHEDH  123 (321)
T ss_pred             ceEEEecccc-CCCCCcH------HHHHHHHHHhhcCCCcEEEecCchhhh
Confidence            5799999976 4554432      2233333211 1234699999999885

RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all

>cd07418 MPP_PP7 PP7, metallophosphatase domain

Probab=83.36  E-value=1.2  Score=36.44  Aligned_cols=43  Identities=28%  Similarity=0.492  Sum_probs=26.4

Q ss_pred             CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839           11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+|++||.+ +.|..+      .+.+..++.. -...--++++.||||..
T Consensus        95 ~~ylFLGDyV-DRGp~S------lEvl~lL~~lki~~p~~v~lLRGNHE~~  138 (377)
T cd07418          95 RFYVFNGDYV-DRGAWG------LETFLLLLSWKVLLPDRVYLLRGNHESK  138 (377)
T ss_pred             ceEEEecccc-CCCCCh------HHHHHHHHHHhhccCCeEEEEeeecccc
Confidence            3599999966 566543      2333333221 12345689999999985

PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast

Probab=83.15  E-value=0.49  Score=34.72  Aligned_cols=62  Identities=19%  Similarity=0.063  Sum_probs=31.3

Q ss_pred             hcCCCEEEEcCCccCCCCCCC---------CCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC-chhhcC
Q 040839            7 KLEIDFVISTGDNFYEDGLTG---------EDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD-VEAQLS   68 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~---------~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~-~~aq~~   68 (131)
                      +.+|+.+|++|+-+-......         .....+...+...+..-.-.+++..+||+||-... +..|..
T Consensus        29 ~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~~~~lPq~p  100 (209)
T PF04042_consen   29 ASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPNDPTSSPVLPQPP  100 (209)
T ss_dssp             CTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTCTT-S-SCSB--
T ss_pred             cCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCccccccCCCCCCC
Confidence            678999999999664322110         00111222222333211125899999999999876 555543

In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain

Probab=83.00  E-value=2.1  Score=33.21  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=50.2

Q ss_pred             cCCCEEEEcCCccCCCCCCCC--------------CChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCcc--c
Q 040839            8 LEIDFVISTGDNFYEDGLTGE--------------DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPV--L   71 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~--------------~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~--~   71 (131)
                      .+..-+|..||.+-..+....              ....-.+.++..+..-.-.+|+..+|||||-......|....  +
T Consensus        41 s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~l  120 (257)
T cd07387          41 SSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCL  120 (257)
T ss_pred             cceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHH
Confidence            345679999999865543211              001112223333331122599999999999987666666421  1


Q ss_pred             cccC---CCCcc-cceEEecCCeEEEEEEeCCcCcc
Q 040839           72 TRKD---SRWLC-SRSFILDAEIAEFVFVDTTPFVD  103 (131)
Q Consensus        72 ~~~~---~~w~~-p~~~~~~~~~v~~~~lDT~~~~~  103 (131)
                      -...   ....+ ..-|.++-+.++|+.-.-+...+
T Consensus       121 fp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~D  156 (257)
T cd07387         121 FPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDD  156 (257)
T ss_pred             hhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHH
Confidence            0111   11111 11233444568887777666433

PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily

>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain

Probab=82.93  E-value=2.3  Score=32.95  Aligned_cols=48  Identities=17%  Similarity=0.196  Sum_probs=26.1

Q ss_pred             CCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            9 EID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         9 ~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      .++ +++..||.+..+...+....+  . .-+++.  .++.- .+++||||+..+
T Consensus        48 ~~~~l~ld~GD~~~gs~~~~~~~g~--~-~~~~ln--~~g~D-~~~lGNHefd~G   96 (281)
T cd07409          48 NPNVLFLNAGDAFQGTLWYTLYKGN--A-DAEFMN--LLGYD-AMTLGNHEFDDG   96 (281)
T ss_pred             CCCEEEEeCCCCCCCcchhhhcCCh--H-HHHHHH--hcCCC-EEEeccccccCC
Confidence            455 566699998765443321111  1 112222  34444 556899999754

CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si

>cd07416 MPP_PP2B PP2B, metallophosphatase domain

Probab=82.79  E-value=1.5  Score=34.68  Aligned_cols=44  Identities=18%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      .+-+|++||-+ +.|..+      .+.+..++.. -...--++++.||||..
T Consensus        70 ~~~ylFLGDyV-DRG~~s------~Evi~lL~~lki~~p~~v~lLRGNHE~~  114 (305)
T cd07416          70 NTRYLFLGDYV-DRGYFS------IECVLYLWALKILYPKTLFLLRGNHECR  114 (305)
T ss_pred             CceEEEECCcc-CCCCCh------HHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence            47799999966 455432      2333333321 11234689999999974

PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G

>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain

Probab=82.41  E-value=1.2  Score=35.24  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=25.9

Q ss_pred             EEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839           12 FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        12 ~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      -+|++||-+ +.|..+      .+.+..++.. ...+-.++.+.||||..
T Consensus        85 ~~vfLGDyV-DRGp~s------~evl~ll~~lk~~~p~~v~lLRGNHE~~  127 (311)
T cd07419          85 DYLFLGDYV-DRGSNS------LETICLLLALKVKYPNQIHLIRGNHEDR  127 (311)
T ss_pred             eEEEECCcc-CCCCCh------HHHHHHHHHhhhcCCCcEEEeccccchH
Confidence            488999966 555432      2334433321 12345799999999974

Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most

>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain

Probab=82.08  E-value=0.99  Score=35.15  Aligned_cols=48  Identities=13%  Similarity=0.171  Sum_probs=25.3

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ..++|..||+|..++..+... +-.... +++.  .+++- ++++||||+..+
T Consensus        43 ~~l~ld~GD~~~gs~~~s~~~-~g~~~~-~~~n--~~g~D-a~t~GNHefd~G   90 (288)
T cd07412          43 NSLFVSAGDLIGASPFESALL-QDEPTI-EALN--AMGVD-ASAVGNHEFDEG   90 (288)
T ss_pred             CeEEEeCCcccccccchhhcc-cCCcHH-HHHH--hhCCe-eeeecccccccC
Confidence            358999999996554421100 000111 2221  23333 478899998743

YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
1ute_A	313	Pig Purple Acid Phosphatase Complexed With Phosphat		7e-09
1war_A	310	Recombinant Human Purple Acid Phosphatase Expressed		1e-08
2bq8_X	304	Crystal Structure Of Human Purple Acid Phosphatase		1e-08
1qhw_A	327	Purple Acid Phosphatase From Rat Bone Length = 327		8e-08
1qfc_A	306	Structure Of Rat Purple Acid Phosphatase Length = 3		8e-08

>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate Length = 313

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVE 64
           + L  DF++S GDNFY  G+    D  F ++F  +++ PSL+   W+ + GNHD+ G+V 
Sbjct: 40  KTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVS 99
Query: 65  AQLSPVLTRKDSRW 78
           AQ++   ++   RW
Sbjct: 100 AQIA--YSKISKRW 111

>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In Pichia Pastoris Length = 310

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           L  DF++S GDNFY  G+   +D  F ++F  +++  SL+K  WY + GNHD+ G+V AQ
Sbjct: 46  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 105
Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 106 IA--YSKISKRW 115

>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An Inhibitory Conformation Of The Repression Loop Length = 304

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           L  DF++S GDNFY  G+   +D  F ++F  +++  SL+K  WY + GNHD+ G+V AQ
Sbjct: 40  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 99
Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 100 IA--YSKISKRW 109

>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone Length = 327

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           +  DF++S GDNFY  G+   +D  F ++F  +++  +L+   WY + GNHD+ G+V AQ
Sbjct: 63  MGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQ 122
Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 123 IA--YSKISKRW 132

>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase Length = 306

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           +  DF++S GDNFY  G+   +D  F ++F  +++  +L+   WY + GNHD+ G+V AQ
Sbjct: 42  MGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQ 101
Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 102 IA--YSKISKRW 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
1ute_A	313	Protein (II purple acid phosphatase); tartrate res	5e-27
3tgh_A	342	Glideosome-associated protein 50; phosphatase fold	8e-12
2nxf_A	322	Putative dimetal phosphatase; dinuclear metal cent	4e-05

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Length = 313

 Score =  100 bits (251), Expect = 5e-27
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDY 59
           +    + L  DF++S GDNFY  G+    D  F ++F  +++ PSL+   W+ + GNHD+
Sbjct: 35  IATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDH 94

Query: 60  RGDVEAQLSPVLTRK----DSRWLCSRSFILDAEI-AEFVFVDTTPFVDEYFQDPGDSTY 114
            G+V AQ++     K     S +   R  I  + +      +DT                
Sbjct: 95  LGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPE 154

Query: 115 DWRGVYQRKEYLSDLLK 131
             R +   +  L+ + K
Sbjct: 155 RPRNLALARTQLAWIKK 171

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7} Length = 342

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 1  MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPS--LQKQWYNVLGNHD 58
               +   + F++S G NF  DG+ G +DPA+ + +  +Y+     +   ++ VLG  D
Sbjct: 26 FKQFIKNERVTFIVSPGSNFI-DGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRD 84

Query: 59 YRGDVEAQLSP 69
          + G+  AQL  
Sbjct: 85 WTGNYNAQLLK 95

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Length = 322

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 2/113 (1%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA 65
            +  +  V+  GD         +     LD+  +     +     ++V GNH++      
Sbjct: 48  RRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAEL--DACSVDVHHVWGNHEFYNFSRP 105

Query: 66  QLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRG 118
            L         R        L  +          P       D  D +   R 
Sbjct: 106 SLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGRE 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3tgh_A	342	Glideosome-associated protein 50; phosphatase fold	99.9
1ute_A	313	Protein (II purple acid phosphatase); tartrate res	99.62
1xzw_A	426	Purple acid phosphatase; hydrolase; HET: NAG FUC M	99.23
2qfp_A	424	Purple acid phosphatase; binuclear, Fe-Zn, hydrola	99.17
2yeq_A	527	Apased, PHOD, alkaline phosphatase D; hydrolase, p	98.73
3d03_A	274	Phosphohydrolase; glycerophosphodiesterase, metall	98.71
3ib7_A	330	ICC protein; metallophosphoesterase, alpha-beta fo	98.7
2nxf_A	322	Putative dimetal phosphatase; dinuclear metal cent	98.67
2q8u_A	336	Exonuclease, putative; structural genomics, joint	98.33
2xmo_A	443	LMO2642 protein; phosphodiesterase, hydrolase; 1.7	98.31
1uf3_A	228	Hypothetical protein TT1561; metallo-dependent pho	98.19
3tho_B	379	Exonuclease, putative; adenosine triphosphate, bac	98.17
1ii7_A	333	MRE11 nuclease; RAD50, DNA double-strand break rep	98.03
3av0_A	386	DNA double-strand break repair protein MRE11; DNA	97.93
3t1i_A	431	Double-strand break repair protein MRE11A; DNA rep	97.8
2yvt_A	260	Hypothetical protein AQ_1956; structural genomics,	97.75
4fbw_A	417	DNA repair protein RAD32; DNA double-strand break	97.6
4fbk_A	472	DNA repair and telomere maintenance protein NBS1,	97.58
1s3l_A	190	Hypothetical protein MJ0936; phosphodiesterase, nu	97.48
1su1_A	208	Hypothetical protein YFCE; structural genomics, ph	97.43
1xm7_A	195	Hypothetical protein AQ_1665; structural genomics,	97.41
2a22_A	215	Vacuolar protein sorting 29; alpha-beta-BETA-alpha	97.32
1z2w_A	192	Vacuolar protein sorting 29; VPS29, retromer, phos	97.29
3rl5_A	296	Metallophosphoesterase mpped2; alpha-beta fold, me	96.92
2kkn_A	178	Uncharacterized protein; protein phosphatase 2A ho	96.85
3ck2_A	176	Conserved uncharacterized protein (predicted phosp	96.39
3qfm_A	270	SAPH, putative uncharacterized protein; sandwich f	96.25
1nnw_A	252	Hypothetical protein; structural genomics, PSI, pr	96.1
1g5b_A	221	Serine/threonine protein phosphatase; bacteriophag	95.57
3rqz_A	246	Metallophosphoesterase; PSI-biology, midwest cente	94.93
2dfj_A	280	Diadenosinetetraphosphatase; helices and strands m	94.59
2qjc_A	262	Diadenosine tetraphosphatase, putative; putative d	94.47
2ie4_C	309	PP2A-alpha;, serine/threonine-protein phosphatase	93.86
2z72_A	342	Protein-tyrosine-phosphatase; cold-active enzyme,	93.33
1fjm_A	330	Protein serine/threonine phosphatase-1 (alpha ISO	92.78
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	91.24
3e7a_A	299	PP-1A, serine/threonine-protein phosphatase PP1-al	90.93
2z1a_A	552	5'-nucleotidase; metal-binding, nucleotide-binding	90.71
3ll8_A	357	Serine/threonine-protein phosphatase 2B catalytic	89.77
3h63_A	315	Serine/threonine-protein phosphatase 5; metalloenz	89.6
3icf_A	335	PPT, serine/threonine-protein phosphatase T; IRO m	88.9
1aui_A	521	Calcineurin, serine/threonine phosphatase 2B; hydr	88.36
1hp1_A	516	5'-nucleotidase; metallophosphatase, dinuclear, me	88.03
3ive_A	509	Nucleotidase; structural genomics, PSI-2, protein	86.46
4h2g_A	546	5'-nucleotidase; dimer, hydrolase, phosphatase, ex	85.15
1t71_A	281	Phosphatase, conserved HYPO; crystal, X-RAY crysta	82.4

>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}

Probab=99.90  E-value=8.4e-25  Score=173.01  Aligned_cols=103  Identities=24%  Similarity=0.539  Sum_probs=86.4

Q ss_pred             ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCC--CCCCceEEeCCCcccCCCchhhcCccc-------
Q 040839            1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAP--SLQKQWYNVLGNHDYRGDVEAQLSPVL-------   71 (131)
Q Consensus         1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~--~l~~p~~~vlGNHD~~~~~~aq~~~~~-------   71 (131)
                      |++++++.+|||||++|||||. |+.+..|++|++.|+++|...  .+++|||+|||||||.++..+|.+|+.       
T Consensus        26 m~~~~~~~~pd~vl~~GD~~y~-G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlGNHD~~~~~~aq~~~~~~~~~~~~  104 (342)
T 3tgh_A           26 FKQFIKNERVTFIVSPGSNFID-GVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQLLKGQGIYIEKN  104 (342)
T ss_dssp             HHHHHHHTTCCEEEECSCSBTT-CCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCCHHHHTSCHHHHHHHHHC------
T ss_pred             HHHHHhhcCCCEEEECCCcccC-CCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCCCCccCCCchHhhhhhhccccccc
Confidence            5678889999999999999999 998889999999999999753  578999999999999999999988743       


Q ss_pred             ----------cccCCCCccc-ceEEe----c---------CC----eEEEEEEeCCcCccc
Q 040839           72 ----------TRKDSRWLCS-RSFIL----D---------AE----IAEFVFVDTTPFVDE  104 (131)
Q Consensus        72 ----------~~~~~~w~~p-~~~~~----~---------~~----~v~~~~lDT~~~~~~  104 (131)
                                +..++||.|| ++|++    .         .|    .|+||+|||+.+...
T Consensus       105 ~~~~~~~~~~~~~~~rw~~P~~yY~~~~~f~~~~~~~~~~~g~~~~~v~fi~LDT~~l~~~  165 (342)
T 3tgh_A          105 GETSIEKDADATNYPKWIMPNYWYHYFTHFTVSSGPSIVKTGHKDLAAAFIFIDTWVLSSN  165 (342)
T ss_dssp             ---------CCCSSCEEECSSSSEEEEEEEEEC---------CEEEEEEEEECCTTTTSTT
T ss_pred             ccccccccccccCCCCccCCcceEEEEEEeeccccccccccCCCCceEEEEEEeCcccccC
Confidence                      3467999999 45543    1         12    699999999987654

>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*

Probab=99.62  E-value=1.8e-16  Score=120.10  Aligned_cols=98  Identities=31%  Similarity=0.584  Sum_probs=75.5

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCC-CCceEEeCCCcccCCCchhhcCccccccCCCCcccc
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSL-QKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSR   82 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l-~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~   82 (131)
                      ++++.+|||||++||++|..|+.+..+++|...+++++....+ ++||++++||||+..+..++..|  .....+|.+|.
T Consensus        38 ~~~~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p~~~v~GNHD~~~~~~~~~~~--~~~~~~~~~~~  115 (313)
T 1ute_A           38 TVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAY--SKISKRWNFPS  115 (313)
T ss_dssp             HHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEEECCCHHHHHSCHHHHHHG--GGTSTTEECCS
T ss_pred             HHHhcCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCCEEEECCCCccCCCccccccc--cccCCCccCcc
Confidence            3556799999999999999999877778888878777753457 79999999999998776666554  23356788874


Q ss_pred             -eEEecC------CeEEEEEEeCCcCcc
Q 040839           83 -SFILDA------EIAEFVFVDTTPFVD  103 (131)
Q Consensus        83 -~~~~~~------~~v~~~~lDT~~~~~  103 (131)
                       +|.+..      +.++||+|||..+..
T Consensus       116 ~~y~~~~~~~~~~~~~~~i~lds~~~~~  143 (313)
T 1ute_A          116 PYYRLRFKIPRSNVSVAIFMLDTVTLCG  143 (313)
T ss_dssp             SSEEEEEECTTSSCEEEEEECCHHHHHC
T ss_pred             cceEEEEecCCCCceEEEEEEEChHHhC
Confidence             454332      589999999987554

>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1

Probab=99.23  E-value=3e-12  Score=102.59  Aligned_cols=90  Identities=12%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCch--hhcCccccccCCCCccc----
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVE--AQLSPVLTRKDSRWLCS----   81 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~--aq~~~~~~~~~~~w~~p----   81 (131)
                      .+|||||++||++|..|..+.++.+|.. |.+.+..-...+||++++||||+..+..  .+..+  .....+|.||    
T Consensus       153 ~~~D~vl~~GD~~y~~~~~~~~~~~~~~-~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~~--~~~~~~f~~p~~~~  229 (426)
T 1xzw_A          153 AKGQAVLFMGDLSYSNRWPNHDNNRWDT-WGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPF--VPFTNRYPTPHEAS  229 (426)
T ss_dssp             TCCSEEEECSCCCCGGGSGGGCTHHHHH-HHHHHHHHHTTSCEECCCCGGGCCCBGGGTBCSTT--HHHHHHSCCCCGGG
T ss_pred             CCCCEEEeCCChhhcccCCcccchHHHH-HHHHHHHHHhcCCEEEeccccccccCCccccccCC--hhheEEEeCCcccC
Confidence            3899999999999988765444566643 3333321123699999999999975321  11111  1111345554    


Q ss_pred             -----ceEEecCCeEEEEEEeCCc
Q 040839           82 -----RSFILDAEIAEFVFVDTTP  100 (131)
Q Consensus        82 -----~~~~~~~~~v~~~~lDT~~  100 (131)
                           .+|+++.+.++||+|||..
T Consensus       230 ~~~~~~~ys~~~g~~~~i~Ldt~~  253 (426)
T 1xzw_A          230 GSGDPLWYAIKRASAHIIVLSSYS  253 (426)
T ss_dssp             TCSSTTSEEEEETTEEEEECCTTS
T ss_pred             CCCCCCeEEEEECCEEEEEeeCcc
Confidence                 3677887789999999974

>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*

Probab=99.17  E-value=6.3e-12  Score=100.58  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=56.5

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCc--hhhcCccccccCCCCccc-----
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDV--EAQLSPVLTRKDSRWLCS-----   81 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~--~aq~~~~~~~~~~~w~~p-----   81 (131)
                      +|||||++||++|..|....++.+|.. |.+.+..-...+||++++||||+....  .....+  .....+|.||     
T Consensus       147 ~~D~vl~~GDl~y~~~~~~~~~~~~~~-~~~~l~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~--~~~~~~f~~P~~~~~  223 (424)
T 2qfp_A          147 KGQTVLFVGDLSYADRYPNHDNVRWDT-WGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPF--KPFSYRYHVPYEASQ  223 (424)
T ss_dssp             CCCEEEECSCCSCGGGSGGGCTHHHHH-HHHHHHHHHTTSCEEECCCHHHHCCBGGGTBCSTT--HHHHHHCCCCGGGGT
T ss_pred             CCCEEEEcCccccccccccccchHHHH-HHHHHHHHHhcCCeEeecCCcccccCCcccccccc--hhhhhhccCCccccC
Confidence            899999999999988765444555543 333322111258999999999997421  111111  1111234444     


Q ss_pred             ----ceEEecCCeEEEEEEeCCc
Q 040839           82 ----RSFILDAEIAEFVFVDTTP  100 (131)
Q Consensus        82 ----~~~~~~~~~v~~~~lDT~~  100 (131)
                          .+|+++.+.++||+|||..
T Consensus       224 ~~~~~~ys~~~g~~~~i~Ldt~~  246 (424)
T 2qfp_A          224 STSPFWYSIKRASAHIIVLSSYS  246 (424)
T ss_dssp             CSSTTSEEEEETTEEEEECCTTS
T ss_pred             CCCCcEEEEEECCEEEEEecCCc
Confidence                2677877899999999963

>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}

Probab=98.73  E-value=1.3e-08  Score=84.18  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=39.1

Q ss_pred             cCCCEEEEcCCccCCCCCCCC----------------CChHHHHHHHhhcCCCCC-----CCceEEeCCCcccCCC
Q 040839            8 LEIDFVISTGDNFYEDGLTGE----------------DDPAFLDSFTSIYTAPSL-----QKQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~----------------~d~~~~~~~~~~~~~~~l-----~~p~~~vlGNHD~~~~   62 (131)
                      .+|||||++||+||..|....                +...+...+.+.+..+.+     .+||+++.||||+..+
T Consensus       141 ~~~D~vlhlGD~iY~d~~~~~~~~~~~~R~~~~~e~~tl~~yr~~y~~~~~dp~lq~~~a~~P~i~~wDDHE~~nn  216 (527)
T 2yeq_A          141 EKLDLVFHLGDYIYEYGPNEYVSKTGNVRTHNSAEIITLQDYRNRHAQYRSDANLKAAHAAFPWVVTWDDHEVENN  216 (527)
T ss_dssp             SCCSEEEECSCSSCCCCTTSSCCTTCCCSCCSSSSCCSHHHHHHHHHHHHTCHHHHHHHHHSEEEECCCSTTTSTT
T ss_pred             cCCCEEEecCCcccCCCCCcccccccccccCCcccccCHHHHHHHHHHHhCCHHHHHHHhcCCEEEecccccccCC
Confidence            689999999999999886421                123344455555543444     3999999999999754

>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A

Probab=98.71  E-value=1.6e-08  Score=75.10  Aligned_cols=78  Identities=21%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCc------ccc
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWL------CSR   82 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~------~p~   82 (131)
                      +||+||.+||.++.. .    .+.+ ..+.+.+.  .+++|+++++||||+.........    .   .|.      .+.
T Consensus        41 ~~d~vi~~GDl~~~~-~----~~~~-~~~~~~l~--~l~~p~~~v~GNHD~~~~~~~~~~----~---~~~~~~~~~~~~  105 (274)
T 3d03_A           41 RPDAVVVSGDIVNCG-R----PEEY-QVARQILG--SLNYPLYLIPGNHDDKALFLEYLQ----P---LCPQLGSDANNM  105 (274)
T ss_dssp             CCSEEEEESCCBSSC-C----HHHH-HHHHHHHT--TCSSCEEEECCTTSCHHHHHHHHG----G---GSGGGCSCGGGC
T ss_pred             CCCEEEECCCCCCCC-C----HHHH-HHHHHHHH--hcCCCEEEECCCCCCHHHHHHHhh----h---hhcCcccCCCce
Confidence            689999999988532 1    1222 33445543  468999999999998643222221    0   021      124


Q ss_pred             eEEecCCeEEEEEEeCCcC
Q 040839           83 SFILDAEIAEFVFVDTTPF  101 (131)
Q Consensus        83 ~~~~~~~~v~~~~lDT~~~  101 (131)
                      +|.+..+.++|+.|||...
T Consensus       106 ~~~~~~~~~~~i~ld~~~~  124 (274)
T 3d03_A          106 RCAVDDFATRLLFIDSSRA  124 (274)
T ss_dssp             CEEECSSSSEEEECCCCCT
T ss_pred             EEEEEeCCEEEEEEeCCCC
Confidence            5777778899999999853

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A

Probab=98.70  E-value=2.7e-08  Score=75.84  Aligned_cols=82  Identities=21%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC--CCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceEE
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA--PSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFI   85 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~--~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~~   85 (131)
                      .+||+||++||.+...      .+.-...+.+.+..  ..+++|++.++||||+.........    . ......|.+|.
T Consensus        65 ~~~d~vi~~GDl~~~~------~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD~~~~~~~~~~----~-~~~~~~~~~~~  133 (330)
T 3ib7_A           65 LRPDAIVFTGDLADKG------EPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLL----D-EAPSMAPLDRV  133 (330)
T ss_dssp             CCCSEEEECSCCBTTC------CHHHHHHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHH----C-CCCCCSCCCEE
T ss_pred             CCCCEEEECCCCCCCC------CHHHHHHHHHHHHHHHhhcCCCEEEeCCCCCCHHHHHHHhc----c-cccccCCcceE
Confidence            6899999999987422      12222223333311  1347999999999998543222211    0 11112234566


Q ss_pred             ecCCeEEEEEEeCCc
Q 040839           86 LDAEIAEFVFVDTTP  100 (131)
Q Consensus        86 ~~~~~v~~~~lDT~~  100 (131)
                      +..+.++|++|||..
T Consensus       134 ~~~~~~~~i~lds~~  148 (330)
T 3ib7_A          134 CMIDGLRIIVLDTSV  148 (330)
T ss_dssp             EEETTEEEEECCCCC
T ss_pred             EEeCCEEEEEecCCC
Confidence            777889999999985

>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12

Probab=98.67  E-value=6.3e-09  Score=78.45  Aligned_cols=92  Identities=16%  Similarity=0.199  Sum_probs=51.1

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC-CchhhcCccccc------cCCCCc
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG-DVEAQLSPVLTR------KDSRWL   79 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~-~~~aq~~~~~~~------~~~~w~   79 (131)
                      +.+||+||++||.++.........+.....+.+.+.  .+++|++.++||||+.. ........ +..      ......
T Consensus        49 ~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~--~~~~p~~~v~GNHD~~~~~~~~~~~~-~~~~~~~~~~~~~~~  125 (322)
T 2nxf_A           49 RERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELD--ACSVDVHHVWGNHEFYNFSRPSLLSS-RLNSAQRTGTDTGSD  125 (322)
T ss_dssp             HTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHH--TTCSEEEECCCHHHHHHCCHHHHHTS-TTCCCC------CEE
T ss_pred             hcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHH--hcCCcEEEecCCCCcccCCHHHHhhh-hCCcccccccccccc
Confidence            368999999999986432111111222233334443  36789999999999942 11111110 000      000011


Q ss_pred             c----cceEEecC-CeEEEEEEeCCcC
Q 040839           80 C----SRSFILDA-EIAEFVFVDTTPF  101 (131)
Q Consensus        80 ~----p~~~~~~~-~~v~~~~lDT~~~  101 (131)
                      +    +.+|.+.. +.++||+|||..+
T Consensus       126 ~~~~~~~~y~~~~~~~~~~i~ld~~~~  152 (322)
T 2nxf_A          126 LIGDDIYAYEFSPAPNFRFVLLDAYDL  152 (322)
T ss_dssp             CGGGTCCCEEEEEETTEEEEECCTTSB
T ss_pred             cCCCCceEEEEecCCCEEEEEEcCcee
Confidence            2    24677775 7899999999864

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A

Probab=98.33  E-value=1.7e-07  Score=72.59  Aligned_cols=54  Identities=26%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCC-hHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDD-PAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d-~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .+.+.+||+||.+||++|+.+.++... ..+.+.+.++-.   . +|+++++||||...
T Consensus        56 ~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~---~-~pv~~i~GNHD~~~  110 (336)
T 2q8u_A           56 EAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMR---T-APVVVLPGNHDWKG  110 (336)
T ss_dssp             HHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHH---H-SCEEECCC------
T ss_pred             HHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHh---c-CCEEEECCCCCccc
Confidence            456789999999999888776543210 122222333221   1 89999999999875

>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}

Probab=98.31  E-value=1.1e-06  Score=70.23  Aligned_cols=50  Identities=24%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~   61 (131)
                      .+.+||+||.+||.+... .    ...+ ..+.+.+.. ...++|++.|+||||...
T Consensus        89 ~~~~~d~vi~~GDl~~~~-~----~~~~-~~~~~~l~~l~~~~~~~~~v~GNHD~~~  139 (443)
T 2xmo_A           89 ESKKTDVLIISGDLTNNG-E----KTSH-EELAKKLTQVEKNGTQVFVVPGNHDINN  139 (443)
T ss_dssp             HHHTCSEEEEESCCBSSC-C----HHHH-HHHHHHHHHHHHTTCEEEEECCTTTSSC
T ss_pred             HHcCCCEEEECCCCCCCC-C----HHHH-HHHHHHHHHHHhCCCeEEEECCcCCCCC
Confidence            457899999999988532 1    1122 222222210 124789999999999964

>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6

Probab=98.19  E-value=2e-06  Score=61.79  Aligned_cols=49  Identities=14%  Similarity=0.042  Sum_probs=31.4

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .+.+||+||.+||.+. .|.    .+.....+.+.+.  .+++|+++|+||||+..
T Consensus        29 ~~~~~D~vi~~GDl~~-~~~----~~~~~~~~~~~l~--~~~~pv~~v~GNHD~~~   77 (228)
T 1uf3_A           29 PDTGADAIALIGNLMP-KAA----KSRDYAAFFRILS--EAHLPTAYVPGPQDAPI   77 (228)
T ss_dssp             HHHTCSEEEEESCSSC-TTC----CHHHHHHHHHHHG--GGCSCEEEECCTTSCSH
T ss_pred             hhcCCCEEEECCCCCC-CCC----CHHHHHHHHHHHH--hcCCcEEEECCCCCchh
Confidence            4458999999999774 221    1221222222332  35789999999999864

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C

Probab=98.17  E-value=5.7e-07  Score=71.26  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=34.0

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCCh-HHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDP-AFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~-~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .+.+.+||+||.+||.|++.+..+.... .+...+..+-   .. +|+++|+||||+.+
T Consensus        38 ~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~---~~-~~v~~i~GNHD~~~   92 (379)
T 3tho_B           38 EAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMM---RT-APVVVLPGNQDWKG   92 (379)
T ss_dssp             HHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHH---HH-SCEEECCCTTSCTT
T ss_pred             HHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHH---hC-CCEEEEcCCCcccc
Confidence            4567899999999998755443321111 1222222221   23 89999999999865

>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A

Probab=98.03  E-value=3.1e-06  Score=65.54  Aligned_cols=54  Identities=22%  Similarity=0.385  Sum_probs=33.3

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~~   61 (131)
                      .+.+.+||+||.+||.|. .+.+   .++-...+.+.+. ....++|+++|+||||...
T Consensus        35 ~~~~~~~D~vl~~GDl~d-~~~~---~~~~~~~~~~~l~~l~~~~~~v~~v~GNHD~~~   89 (333)
T 1ii7_A           35 IAVQENVDFILIAGDLFH-SSRP---SPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQ   89 (333)
T ss_dssp             HHHHTTCSEEEEESCSBS-SSSC---CHHHHHHHHHHHHHHHTTTCCEEEECCTTTCCS
T ss_pred             HHHhcCCCEEEECCCcCC-CCCC---CHHHHHHHHHHHHHHHHCCCcEEEeCCcCCCcc
Confidence            345689999999999874 3222   1221222222221 1134689999999999863

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*

Probab=97.93  E-value=5e-06  Score=65.79  Aligned_cols=54  Identities=22%  Similarity=0.228  Sum_probs=32.9

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~   62 (131)
                      +.+.+||+||.+||.| ..+.++   +.-...+.+.+.. ...++|+++|+||||....
T Consensus        56 ~~~~~~D~VliaGDl~-d~~~p~---~~~~~~~~~~l~~L~~~~~pv~~v~GNHD~~~~  110 (386)
T 3av0_A           56 ILEIKPDVVLHSGDLF-NDLRPP---VKALRIAMQAFKKLHENNIKVYIVAGNHEMPRR  110 (386)
T ss_dssp             HHTTCCSEEEECSCSB-SSSSCC---HHHHHHHHHHHHHHHHTTCEEEECCCGGGSCSS
T ss_pred             HHHcCCCEEEECCCCC-CCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEcCCCCCCcc
Confidence            4567899999999976 343221   2211222222210 1236899999999998753

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}

Probab=97.80  E-value=1.4e-05  Score=64.81  Aligned_cols=58  Identities=21%  Similarity=0.367  Sum_probs=35.1

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhc-----------C-----------------CC--CCCCceEEe
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIY-----------T-----------------AP--SLQKQWYNV   53 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~-----------~-----------------~~--~l~~p~~~v   53 (131)
                      .+.+.+||+||.+||.|.....+...-.++...+.+.-           .                 .+  ..++|+|+|
T Consensus        66 ~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~~~~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I  145 (431)
T 3t1i_A           66 LAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI  145 (431)
T ss_dssp             HHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCCCCEECSCC------------------CCBCSCEEEC
T ss_pred             HHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCcccceeccchhhccccccccccccccccccCCCcEEEE
Confidence            45678999999999987433221111223333344320           0                 01  246999999


Q ss_pred             CCCcccCC
Q 040839           54 LGNHDYRG   61 (131)
Q Consensus        54 lGNHD~~~   61 (131)
                      .||||...
T Consensus       146 ~GNHD~~~  153 (431)
T 3t1i_A          146 HGNHDDPT  153 (431)
T ss_dssp             CCSSSCCB
T ss_pred             ccCCCCcc
Confidence            99999874

>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6

Probab=97.75  E-value=2.4e-05  Score=57.53  Aligned_cols=16  Identities=25%  Similarity=0.192  Sum_probs=14.0

Q ss_pred             CCCceEEeCCCcccCC
Q 040839           46 LQKQWYNVLGNHDYRG   61 (131)
Q Consensus        46 l~~p~~~vlGNHD~~~   61 (131)
                      +++|++.|+||||...
T Consensus        88 ~~~pv~~v~GNHD~~~  103 (260)
T 2yvt_A           88 LGVKTFVVPGKNDAPL  103 (260)
T ss_dssp             TCSEEEEECCTTSCCH
T ss_pred             cCCcEEEEcCCCCchh
Confidence            5689999999999864

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*

Probab=97.60  E-value=3.7e-05  Score=62.03  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=33.4

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCC-ChHHHHHHHhh-----------cC-----------------CC--CCCCceEE
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGED-DPAFLDSFTSI-----------YT-----------------AP--SLQKQWYN   52 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~~~-----------~~-----------------~~--~l~~p~~~   52 (131)
                      .+.+.+||+||.+||.| +.+.++.. -.++...+.+.           ++                 .+  ..++|+|+
T Consensus        47 ~~~~~~~D~VliaGDLf-d~~~p~~~~~~~~~~~lr~~~~g~~~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~~gIpV~~  125 (417)
T 4fbw_A           47 IARERDVDMILLGGDIF-HDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFS  125 (417)
T ss_dssp             HHHHTTCSEEEECSCCB-SSSSCCHHHHHHHHHHHHHHHBSSCCCCCEECC------------CCGGGCTTBCBSSCEEE
T ss_pred             HHHhcCCCEEEEcCccc-cCCCCCHHHHHHHHHHHHHhcccCCcccceeccchhhhcccccccccccccccccCCCeEEE
Confidence            45678999999999976 44333221 11222333320           11                 00  23699999


Q ss_pred             eCCCcccCC
Q 040839           53 VLGNHDYRG   61 (131)
Q Consensus        53 vlGNHD~~~   61 (131)
                      +.||||...
T Consensus       126 I~GNHD~~~  134 (417)
T 4fbw_A          126 IHGNHDDPS  134 (417)
T ss_dssp             CCCGGGC--
T ss_pred             EecCCCCcc
Confidence            999999974

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*

Probab=97.58  E-value=3.4e-05  Score=63.17  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=35.2

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCC-ChHHHHHHHh-----------hcC-----------------CC--CCCCceEE
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGED-DPAFLDSFTS-----------IYT-----------------AP--SLQKQWYN   52 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~~-----------~~~-----------------~~--~l~~p~~~   52 (131)
                      .+.+.+||+||++||.| +.+.++.. -.++...+.+           ++.                 .+  ..++|+|+
T Consensus       110 ~~~~~~~D~VliaGDLf-d~~~ps~~a~~~~~~~Lr~~~~g~~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~~gIpVf~  188 (472)
T 4fbk_A          110 IARERDVDMILLGGDIF-HDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFS  188 (472)
T ss_dssp             HHHHTTCSEEEECSCSB-SSSSCCHHHHHHHHHHHHHHHBSSCCCCCEEEEEC-----CCCSCSSSTTCTTBCBSSCEEE
T ss_pred             HHHhcCCCEEEEcCccc-cCCCCCHHHHHHHHHHHHHhcccCCcchheecchhhhhcccccccccccccccccCCCcEEE
Confidence            45678999999999976 44333221 1123333332           011                 00  23699999


Q ss_pred             eCCCcccCCC
Q 040839           53 VLGNHDYRGD   62 (131)
Q Consensus        53 vlGNHD~~~~   62 (131)
                      +.||||....
T Consensus       189 I~GNHD~~~~  198 (472)
T 4fbk_A          189 IHGNHDDPSG  198 (472)
T ss_dssp             CCCCCCSCCC
T ss_pred             EecCCCCccc
Confidence            9999999743

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A

Probab=97.48  E-value=0.00016  Score=51.94  Aligned_cols=41  Identities=20%  Similarity=0.205  Sum_probs=28.7

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .+.++|+|+.+||.+-         ++   .++.+.   .++.|+++|+||||...
T Consensus        49 ~~~~~D~ii~~GDl~~---------~~---~~~~l~---~l~~~~~~V~GNhD~~~   89 (190)
T 1s3l_A           49 NDENVETVIHCGDFVS---------LF---VIKEFE---NLNANIIATYGNNDGER   89 (190)
T ss_dssp             HHSCCSEEEECSCCCS---------TH---HHHHGG---GCSSEEEEECCTTCCCH
T ss_pred             hhcCCCEEEECCCCCC---------HH---HHHHHH---hcCCCEEEEeCCCcchH
Confidence            3468999999999652         22   222222   35689999999999863

>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7

Probab=97.43  E-value=0.00014  Score=52.84  Aligned_cols=50  Identities=14%  Similarity=0.140  Sum_probs=29.8

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChH--HHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPA--FLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~--~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.++|+||.+||.+. .|........  ..+.+ +.+.  .+..|+++|+||||..
T Consensus        50 ~~~~d~vi~~GDl~~-~g~~~~~~~~~~~~~~~-~~l~--~~~~~v~~V~GNHD~~  101 (208)
T 1su1_A           50 QSGAQWLVILGDVLN-HGPRNALPEGYAPAKVV-ERLN--EVAHKVIAVRGNCDSE  101 (208)
T ss_dssp             HHTCSEEEECSCCSC-CCTTSCCCTTBCHHHHH-HHHH--TTGGGEEECCCTTCCH
T ss_pred             hcCCCEEEECCCccc-cCcccccccccCHHHHH-HHHH--hcCCceEEEECCCchH
Confidence            468999999999774 3332111111  11222 2221  2457999999999974

>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8

Probab=97.41  E-value=0.00015  Score=51.69  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=28.4

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++|+|+.+||.+.. | ..  -....+.++      .++.|+++|+||||..
T Consensus        42 ~~~D~vi~~GDl~~~-~-~~--~~~~~~~l~------~l~~~~~~v~GNhD~~   84 (195)
T 1xm7_A           42 KPEDTLYHLGDFTWH-F-ND--KNEYLRIWK------ALPGRKILVMGNHDKD   84 (195)
T ss_dssp             CTTCEEEECSCCBSC-S-CC--TTSHHHHHH------HSSSEEEEECCTTCCC
T ss_pred             CCCCEEEECCCCCCC-c-hh--HHHHHHHHH------HCCCCEEEEeCCCCCc
Confidence            479999999998753 3 11  112222222      2446999999999985

>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7

Probab=97.32  E-value=0.00015  Score=52.77  Aligned_cols=40  Identities=23%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      +.++|+||.+||.+-         ....+.+.      .+..|+++|+||||...
T Consensus        53 ~~~~D~vi~~GDl~~---------~~~l~~l~------~~~~~v~~V~GNHD~~~   92 (215)
T 2a22_A           53 TDKINYVLCTGNVCS---------QEYVEMLK------NITKNVYIVSGDLDSAI   92 (215)
T ss_dssp             CTTCCEEEECSCCCC---------HHHHHHHH------HHCSCEEECCCTTCCSC
T ss_pred             cCCCCEEEECCCCCC---------HHHHHHHH------HcCCCEEEecCCCcCcc
Confidence            457999999999651         22222222      23469999999999864

>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A

Probab=97.29  E-value=0.00014  Score=51.86  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=27.6

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      +.++|+|+.+||.+-         ....+.+.+      +..|+++|+||||...
T Consensus        38 ~~~~d~ii~~GDl~~---------~~~~~~l~~------~~~~~~~v~GNhD~~~   77 (192)
T 1z2w_A           38 PGKIQHILCTGNLCT---------KESYDYLKT------LAGDVHIVRGDFDENL   77 (192)
T ss_dssp             TTSCSEEEECSCCBS---------HHHHHHHHH------HCSEEEECCCTTCCCT
T ss_pred             cCCCCEEEEcCCCCC---------HHHHHHHHh------cCCCEEEEcCCcCccc
Confidence            457999999999651         222222222      3469999999999864

>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*

Probab=96.92  E-value=0.0011  Score=51.17  Aligned_cols=47  Identities=26%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCC-CceEEeCCCcccCCC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQ-KQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~-~p~~~vlGNHD~~~~   62 (131)
                      .++|+||.+||.+. .|     ...-...+.+.+.  .+. .|+++|+||||+.-+
T Consensus        78 ~~~D~vi~aGDl~~-~g-----~~~e~~~~~~~L~--~l~~~~v~~V~GNHD~~~d  125 (296)
T 3rl5_A           78 PYGDILLHTGDFTE-LG-----LPSEVKKFNDWLG--NLPYEYKIVIAGNHELTFD  125 (296)
T ss_dssp             CSCSEEEECSCCSS-SC-----CHHHHHHHHHHHH--TSCCSEEEECCCTTCGGGC
T ss_pred             CCCCEEEECCcccC-CC-----CHHHHHHHHHHHH--hCCCCeEEEEcCCcccccc
Confidence            47999999999763 22     1221222333332  244 569999999999643

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}

Probab=96.85  E-value=0.0016  Score=46.13  Aligned_cols=38  Identities=34%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++|+|+.+||.+.         ....+.+.+      +..|+++|+||||..
T Consensus        49 ~~~D~ii~~GD~~~---------~~~~~~l~~------~~~~v~~V~GNhD~~   86 (178)
T 2kkn_A           49 KEYDGVIGLGDYVD---------LDTVILLEK------FSKEFYGVHGNMDYP   86 (178)
T ss_dssp             GGCSEEEESSCBSC---------HHHHHHHHH------HTSSEEECCCSSSCG
T ss_pred             cCCCEEEECCCCCC---------HHHHHHHHh------cCCCEEEEECCCCcH
Confidence            67999999999652         222222222      236999999999974

>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7

Probab=96.39  E-value=0.0028  Score=44.32  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=23.5

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      ++|+|+.+||.-+    .      +   ++.      +..|+++|+||||+..
T Consensus        32 ~~d~i~~~GD~~~----~------~---l~~------l~~~~~~v~GNhD~~~   65 (176)
T 3ck2_A           32 KVDAVFHNGDSEL----R------P---DSP------LWEGIRVVKGNMDFYA   65 (176)
T ss_dssp             TSSEEEECSCCCS----C------T---TCG------GGTTEEECCCTTCCST
T ss_pred             CCCEEEECCCCch----H------H---HHh------hhCCeEEecCcccchh
Confidence            7999999999521    0      0   111      1138999999999864

>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*

Probab=96.25  E-value=0.0026  Score=47.92  Aligned_cols=43  Identities=23%  Similarity=0.186  Sum_probs=27.9

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.++|.|+++||.+. .|..    +  .+.++.+-   .+ .|+++|+||||..
T Consensus        36 ~~~~D~ii~~GDlv~-~g~~----~--~~~~~~l~---~~-~~~~~v~GNhD~~   78 (270)
T 3qfm_A           36 QLGVDEYWLLGDILM-PGTG----R--RRILDLLD---QL-PITARVLGNWEDS   78 (270)
T ss_dssp             HTTCCEEEECSCCSS-SSSC----S--HHHHHHHH---TS-CEEEECCCHHHHH
T ss_pred             hcCCCEEEEcCCCCC-CCCC----H--HHHHHHHH---cc-CCEEEEcCChHHH
Confidence            457999999999873 3332    1  12232222   12 3799999999975

>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A

Probab=96.10  E-value=0.0012  Score=48.29  Aligned_cols=44  Identities=11%  Similarity=-0.003  Sum_probs=27.2

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ++|+||++||.+. .|..   ..+..+.+.++..    ..|+++|+||||..
T Consensus        33 ~~d~ii~~GD~~~-~g~~---~~~~~~~l~~l~~----~~~~~~v~GNhD~~   76 (252)
T 1nnw_A           33 EIEKYYILGNIVG-LFPY---PKEVIEVIKDLTK----KENVKIIRGKYDQI   76 (252)
T ss_dssp             CEEEEEEESCSSS-SSSC---HHHHHHHHHHHHH----HSCEEEECCHHHHH
T ss_pred             CCCEEEEeCccCC-CCCC---HHHHHHHHHhhHh----hcCeeEEecchHHH
Confidence            7999999999763 3321   1122222322211    15799999999975

>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3

Probab=95.57  E-value=0.0072  Score=43.64  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=26.7

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ++|.||++||.+ ..|..    +  .+.++.+.     ..++++|+||||..
T Consensus        40 ~~d~~i~~GD~~-~~g~~----~--~~~~~~l~-----~~~~~~v~GNhd~~   79 (221)
T 1g5b_A           40 KKDLLISVGDLV-DRGAE----N--VECLELIT-----FPWFRAVRGNHEQM   79 (221)
T ss_dssp             TTCEEEECSCCS-SSSSC----H--HHHHGGGG-----STTEEECCCHHHHH
T ss_pred             CCCEEEEeCCcc-CCCCC----h--HHHHHHHh-----cCCEEEEccCcHHH
Confidence            689999999976 33332    1  12333332     25899999999975

>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0

Probab=94.93  E-value=0.0098  Score=43.67  Aligned_cols=41  Identities=29%  Similarity=0.421  Sum_probs=25.3

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ++|.|+++||.+. .|.    ++.  +.++.+..   +. +++.|+||||..
T Consensus        28 ~~d~ii~~GDl~~-~g~----~~~--~~~~~l~~---~~-~~~~v~GNhD~~   68 (246)
T 3rqz_A           28 RVDDIWSLGDIVG-YGP----RPR--ECVELVRV---LA-PNISVIGNHDWA   68 (246)
T ss_dssp             SCSEEEECSCCSS-SSS----CHH--HHHHHHHH---HC-SSEECCCHHHHH
T ss_pred             CCCEEEECCCcCC-CCC----CHH--HHHHHHHh---cC-CCEEEeCchHHH
Confidence            8999999999873 332    221  22222211   11 269999999975

>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}

Probab=94.59  E-value=0.013  Score=44.51  Aligned_cols=43  Identities=33%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++|.+|++||.+ +.|..+      .+.++.+..   +..+++.++||||..
T Consensus        27 ~~~d~~v~lGD~v-drG~~s------~~~l~~l~~---l~~~~~~v~GNHe~~   69 (280)
T 2dfj_A           27 PGKDTLWLTGDLV-ARGPGS------LDVLRYVKS---LGDSVRLVLGNHDLH   69 (280)
T ss_dssp             TTTCEEEECSCCS-SSSSCH------HHHHHHHHH---TGGGEEECCCHHHHH
T ss_pred             CCCCEEEEeCCcC-CCCCcc------HHHHHHHHh---CCCceEEEECCCcHH
Confidence            3579999999976 344321      123333332   334899999999974

>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}

Probab=94.47  E-value=0.014  Score=43.59  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=25.2

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +|.+|++||.+ ..|..+   .   +.++.+.     ..++++|+||||..
T Consensus        47 ~d~ii~~GD~v-d~g~~~---~---~~l~~l~-----~~~~~~v~GNHd~~   85 (262)
T 2qjc_A           47 SDTLVAVGDLV-NKGPDS---F---GVVRLLK-----RLGAYSVLGNHDAK   85 (262)
T ss_dssp             TSEEEECSCCS-SSSSCH---H---HHHHHHH-----HHTCEECCCHHHHH
T ss_pred             CCEEEEecCCC-CCCCCH---H---HHHHHHH-----HCCCEEEeCcChHH
Confidence            49999999976 334321   1   2233222     14799999999974

>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*

Probab=93.86  E-value=0.033  Score=42.99  Aligned_cols=45  Identities=18%  Similarity=0.220  Sum_probs=26.7

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+.+|++||.+ +.|..+.      +.+..+... ...+-.++.+.||||..
T Consensus        76 ~~~~~vflGD~V-DRG~~s~------evl~lL~~lk~~~p~~v~~lrGNHE~~  121 (309)
T 2ie4_C           76 PDTNYLFMGDYV-DRGYYSV------ETVTLLVALKVRYRERITILRGNHESR  121 (309)
T ss_dssp             TTSCEEECSCCS-SSSTTHH------HHHHHHHHHHHHCTTTEEECCCTTSST
T ss_pred             CCCEEEEeCCcc-CCCCChH------HHHHHHHHHHhhCCCcEEEEeCCCCHH
Confidence            467789999977 4554321      222222210 01134699999999986

>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A

Probab=93.33  E-value=0.033  Score=43.31  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=27.2

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCC----CCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAP----SLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~----~l~~p~~~vlGNHD~~   60 (131)
                      +++.+|++||.+ +.|..+   .   +.++.++...    ..+.+++++.||||..
T Consensus       105 ~~d~~v~lGD~v-drG~~s---~---evl~~l~~l~~~~~~~~~~v~~v~GNHE~~  153 (342)
T 2z72_A          105 GEGHMVMTGDIF-DRGHQV---N---EVLWFMYQLDQQARDAGGMVHLLMGNHEQM  153 (342)
T ss_dssp             TTCEEEECSCCS-SSSSCH---H---HHHHHHHHHHHHHHHTTCEEEECCCHHHHH
T ss_pred             CCCEEEEECCCc-CCCCCH---H---HHHHHHHHHHHHHhhCCCeEEEEecCCcHH
Confidence            579999999976 444422   1   2222222100    1235799999999974

>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3

Probab=92.78  E-value=0.058  Score=42.06  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+-+|++||.+ +.|..+.      +.+..++.. ...+-.++++.||||..
T Consensus        83 ~~~~~vflGD~V-DRG~~s~------evl~lL~~lk~~~p~~v~~lrGNHE~~  128 (330)
T 1fjm_A           83 PESNYLFLGDYV-DRGKQSL------ETICLLLAYKIKYPENFFLLRGNHECA  128 (330)
T ss_dssp             TSSCEEECSCCS-SSSSCHH------HHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             CcceEEeCCCcC-CCCCChH------HHHHHHHHhhhhcCCceEEecCCchHh
Confidence            457799999977 4554321      223222210 01134699999999975

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=91.24  E-value=0.1  Score=41.80  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=25.0

Q ss_pred             CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839           11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+|++||.+ +.|..+.      +.+..++.. ...+.+++++.||||..
T Consensus       242 ~~~v~lGD~v-drG~~s~------e~~~~l~~l~~~~~~~~~~lrGNHE~~  285 (477)
T 1wao_1          242 NPYIFNGDFV-DRGSFSV------EVILTLFGFKLLYPDHFHLLRGNHETD  285 (477)
T ss_dssp             BCEEEESCCS-SSSTTHH------HHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred             CeEEEecccc-CCCcchH------HHHHHHHHHHhhCCCceEeecCCccHH
Confidence            4599999976 4444321      222222210 01246899999999964

>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*

Probab=90.93  E-value=0.12  Score=39.70  Aligned_cols=45  Identities=13%  Similarity=0.243  Sum_probs=25.9

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+.+|++||.+ +.|..+.      +.+..++.. ...+-.++++.||||..
T Consensus        82 ~~~~~vfLGD~V-DrG~~s~------evl~lL~~lk~~~p~~v~~lrGNHE~~  127 (299)
T 3e7a_A           82 PESNYLFLGDYV-DRGKQSL------ETICLLLAYKIKYPENFFLLRGNHECA  127 (299)
T ss_dssp             TSSCEEECSCCS-SSSSCHH------HHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             CCccEEeCCccc-CCCCCcH------HHHHHHHHHHhhCCCcEEEEecCchhh
Confidence            456799999977 4444321      122222110 01234699999999975

>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2

Probab=90.71  E-value=0.22  Score=40.92  Aligned_cols=50  Identities=18%  Similarity=0.164  Sum_probs=25.8

Q ss_pred             hcCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            7 KLEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         7 ~~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      +..|+ ++|..||++-.....+..  +.. ..-+.+.  .++ +-++++||||+..+
T Consensus        71 ~~~~~~l~l~~GD~~~gs~~~~~~--~~~-~~~~~ln--~lg-~d~~~lGNHEfd~g  121 (552)
T 2z1a_A           71 ARAKNPLFLDAGDVFQGTLYFNQY--RGL-ADRYFMH--RLR-YRAMALGNHEFDLG  121 (552)
T ss_dssp             HHSSSEEEEECSCCSSSSHHHHHH--TTH-HHHHHHH--HTT-CCEEECCGGGGTTC
T ss_pred             hhCCCEEEEeCCCCCCCcHHHHHh--CCc-HHHHHHH--hcC-CCccccccccccCC
Confidence            34577 889999988422110000  000 1112221  222 34789999999754

>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A

Probab=89.77  E-value=0.17  Score=39.87  Aligned_cols=46  Identities=17%  Similarity=0.237  Sum_probs=26.4

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      .+.+-+|++||.+ +.|..+.      +.+..++.. ...+-.++++.||||..
T Consensus        95 ~~~~~~vfLGD~V-DRG~~s~------Evl~lL~~lk~~~p~~v~llrGNHE~~  141 (357)
T 3ll8_A           95 PANTRYLFLGDYV-DRGYFSI------ECVLYLWALKILYPKTLFLLRGNHECR  141 (357)
T ss_dssp             TTTCCEEECSCCS-SSSTTHH------HHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred             CCCcEEEECCCcc-CCCcChH------HHHHHHHHhhhhcCCcEEEEeCchhhh
Confidence            3457799999977 4444321      222222210 01224599999999975

>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A

Probab=89.60  E-value=0.18  Score=39.06  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=24.2

Q ss_pred             CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839           11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+|++||.+ +.|..+.      +.+..++.. ...+-.++.+.||||..
T Consensus        89 ~~~vflGD~V-DRG~~s~------evl~lL~~lk~~~p~~v~~lrGNHE~~  132 (315)
T 3h63_A           89 NPYIFNGDFV-DRGSFSV------EVILTLFGFKLLYPDHFHLLRGNHETD  132 (315)
T ss_dssp             BCEEEESCCS-SSSTTHH------HHHHHHHHHHHHSTTTEEEECCTTSSH
T ss_pred             CEEEEeCCcc-CCCcChH------HHHHHHHHhhhhcCCcEEEEecCcccc
Confidence            4599999977 3444321      222222210 01134699999999964

>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}

Probab=88.90  E-value=0.22  Score=38.95  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=24.3

Q ss_pred             CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839           11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus        11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+|++||.+ +.|..+.      +.+..++.. ...+-.++++.||||..
T Consensus        93 ~~~vflGD~V-DRG~~s~------evl~lL~~lk~~~p~~v~llrGNHE~~  136 (335)
T 3icf_A           93 HTYLFNGDFV-DRGSWSC------EVALLFYCLKILHPNNFFLNRGNHESD  136 (335)
T ss_dssp             EEEEECSCCS-SSSTTHH------HHHHHHHHHHHHCTTTEEECCCTTSSH
T ss_pred             cEEEEeCCcc-CCCcChH------HHHHHHHHHhhhCCCcEEEecCchhhh
Confidence            3599999977 4444321      222222210 01234699999999964

>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3

Probab=88.36  E-value=0.24  Score=40.95  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=26.2

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~   60 (131)
                      +.+-+|++||.+ +.|..+.      +.+..++.. ...+-.++++.||||..
T Consensus       109 ~~d~yVFLGDyV-DRGp~S~------Evl~lL~aLk~~~P~~v~lLRGNHE~~  154 (521)
T 1aui_A          109 ANTRYLFLGDYV-DRGYFSI------ECVLYLWALKILYPKTLFLLRGNHECR  154 (521)
T ss_dssp             TTCCEEECSCCS-SSSSCHH------HHHHHHHHHHHHSTTTEEECCCTTSSH
T ss_pred             CcceEEEcCCcC-CCCCCHH------HHHHHHHHHhhhCCCeEEEecCCccHH
Confidence            457899999977 4554321      222222210 01234699999999964

>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A

Probab=88.03  E-value=0.23  Score=40.28  Aligned_cols=48  Identities=15%  Similarity=-0.005  Sum_probs=25.0

Q ss_pred             CC-CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            9 EI-DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         9 ~~-d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      +| +++|..||++-..........  .. .-+.+.  .++ +-++++||||+..+
T Consensus        49 ~~~~lvl~~GD~~~g~~~~~~~~~--~~-~~~~ln--~lg-~d~~~~GNHEfd~g   97 (516)
T 1hp1_A           49 GGSVLLLSGGDINTGVPESDLQDA--EP-DFRGMN--LVG-YDAMAIGNHEFDNP   97 (516)
T ss_dssp             TCEEEEEECSCCSSSCHHHHTTTT--HH-HHHHHH--HHT-CCEEECCGGGGSSC
T ss_pred             CCCEEEEeCCccCCCcchhhhcCC--cH-HHHHHh--ccC-CCEEeeccccccCC
Confidence            45 799999998732211111111  01 111121  123 34789999999754

>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*

Probab=86.46  E-value=0.4  Score=38.95  Aligned_cols=50  Identities=14%  Similarity=0.135  Sum_probs=26.3

Q ss_pred             hcCCCEEEE-cCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            7 KLEIDFVIS-TGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         7 ~~~~d~vv~-~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      +..++.+++ .||++-....+.....  .. .-+.+.  .+ .+-++++||||+..+
T Consensus        49 ~~~~~~llldaGD~~~g~~~~~~~~g--~~-~~~~ln--~l-g~D~~tlGNHEfd~G   99 (509)
T 3ive_A           49 AKNKATWFFDAGDYFTGPYISSLTKG--KA-IIDIMN--TM-PFDAVTIGNHEFDHG   99 (509)
T ss_dssp             HHCSSEEEEECSCCSSSSHHHHTTTT--HH-HHHHHT--TS-CCSEECCCGGGGTTC
T ss_pred             hcCCCeEEEECCCCCCCchhhhhcCC--hH-HHHHHH--hc-CCcEEeecccccccC
Confidence            346777666 9998853222111111  11 122222  23 345788999998754

>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*

Probab=85.15  E-value=0.22  Score=40.94  Aligned_cols=47  Identities=15%  Similarity=0.219  Sum_probs=24.2

Q ss_pred             CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839           10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus        10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      .+++|..||++-.....+..  +... .-+.+.  .+... ++++||||+..+
T Consensus        74 ~~l~l~~GD~~~g~~~~~~~--~g~~-~~~~ln--~lg~d-~~~~GNHEfd~g  120 (546)
T 4h2g_A           74 NVLLLDAGDQYQGTIWFTVY--KGAE-VAHFMN--ALRYD-AMALGNHEFDNG  120 (546)
T ss_dssp             SEEEEECSCCSSSSHHHHHH--TTHH-HHHHHH--HHTCS-EEECCGGGGTTH
T ss_pred             CEEEEECCccCCCchhhhhh--CChH-HHHHHH--hcCCc-EEeccCcccccC
Confidence            46899999998533111000  0011 112221  22333 688999998654

>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9

Probab=82.40  E-value=1.6  Score=33.19  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=26.9

Q ss_pred             hhcCCCEEEEcCCccCCC-CCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            6 EKLEIDFVISTGDNFYED-GLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~-G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      ++.++|+++..|||+... |++    +.   ..+.+.   .+++ =.+++|||+|..+
T Consensus        31 ~~~~~d~vi~Ngen~~gG~g~~----~~---~~~~ln---~~G~-Da~TlGNHefD~g   77 (281)
T 1t71_A           31 SKYQADLVIVNAENTTHGKGLS----LK---HYEFLK---EAGV-NYITMGNHTWFQK   77 (281)
T ss_dssp             HHHTCSEEEEECTBTTTTSSCC----HH---HHHHHH---HHTC-CEEECCTTTTCCG
T ss_pred             HhcCCCEEEEcCCCCCCCCCcC----HH---HHHHHH---hcCC-CEEEEccCcccCC
Confidence            344689999999998643 442    11   121111   1112 2467899999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1utea_	302	d.159.1.1 (A:) Mammalian purple acid phosphatase {	8e-15
d2qfra2	312	d.159.1.1 (A:121-432) Plant purple acid phosphatas	4e-08
d2nxfa1	320	d.159.1.12 (A:3-322) Uncharacterized C17orf48 homo	5e-04

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Mammalian purple acid phosphatase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 66.7 bits (161), Expect = 8e-15
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDY 59
           +    + L  DF++S GDNFY  G+    D  F ++F  +++ PSL+   W+ + GNHD+
Sbjct: 33  IATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDH 92

Query: 60  RGDVEAQLSPVLTRK----DSRWLCSRSFILDAEI-AEFVFVDTTPFVDEYFQDPGDSTY 114
            G+V AQ++     K     S +   R  I  + +      +DT                
Sbjct: 93  LGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPE 152

Query: 115 DWRGVYQRKEYLSDLLK 131
             R +   +  L+ + K
Sbjct: 153 RPRNLALARTQLAWIKK 169

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 312

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Plant purple acid phosphatase, catalytic domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 5/126 (3%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA 65
              +   V+  GD  Y D     D+  + D++          + W    GNH+     E 
Sbjct: 32  SPKKGQTVLFVGDLSYADRYPNHDNVRW-DTWGRFTERSVAYQPWIWTAGNHEIEFAPEI 90

Query: 66  QLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEY 125
             +        R+                F  +      +       +   RG  Q    
Sbjct: 91  NETEPFKPFSYRYHVPYEASQSTS----PFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 146

Query: 126 LSDLLK 131
             +L K
Sbjct: 147 KKELRK 152

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

 Score = 36.3 bits (82), Expect = 5e-04
 Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 2/109 (1%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA 65
            +  +  V+  GD         +     LD+  +     +     ++V GNH++      
Sbjct: 46  RRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAEL--DACSVDVHHVWGNHEFYNFSRP 103

Query: 66  QLSPVLTRKDSRWLCSRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTY 114
            L         R        L  +          P       D  D + 
Sbjct: 104 SLLSSRLNSAQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSV 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1utea_	302	Mammalian purple acid phosphatase {Pig (Sus scrofa	99.64
d2qfra2	312	Plant purple acid phosphatase, catalytic domain {K	99.39
d3d03a1	271	Glycerophosphodiesterase GpdQ {Enterobacter aeroge	98.96
d2hy1a1	256	Rv0805 cyclic nucleotide phosphodiesterase {Mycoba	98.73
d2nxfa1	320	Uncharacterized C17orf48 homolog zgc:64213 {Zebraf	98.52
d1uf3a_	228	Hypothetical protein TT1561 {Thermus thermophilus	98.38
d1ii7a_	333	Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.33
d2yvta1	257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	98.19
d1su1a_	184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	97.16
d1nnwa_	251	Hypothetical protein PF1291 {Archaeon Pyrococcus f	96.65
d1s3la_	165	Putative phosphodiesterase MJ0936 {Methanococcus j	96.57
d1xm7a_	188	Hypothetical protein aq_1666 {Aquifex aeolicus [Ta	96.52
d1z2wa1	182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	95.22
d2a22a1	193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	95.01
d3ck2a1	173	Uncharacterized protein SP1879 {Streptococcus pneu	94.85
d1g5ba_	219	lambda ser/thr protein phosphatase {Bacteriophage	93.89
d3c9fa2	322	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	89.6
d1usha2	337	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	82.02
d2z1aa2	302	5'-nucleotidase (syn. UDP-sugar hydrolase), N-term	80.73

>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Mammalian purple acid phosphatase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=3.2e-17  Score=121.62  Aligned_cols=127  Identities=23%  Similarity=0.409  Sum_probs=87.3

Q ss_pred             hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCC-CCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839            2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAP-SLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC   80 (131)
Q Consensus         2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~-~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~   80 (131)
                      .+.+++.+|||||++||++|..|..+..+++|...++.++... ..++|+++++||||+.++...+..+  ....++|.+
T Consensus        34 ~~~~~~~~~dfvl~~GD~vy~~g~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~--~~~~~~~~~  111 (302)
T d1utea_          34 ATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAY--SKISKRWNF  111 (302)
T ss_dssp             HHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEEECCCHHHHHSCHHHHHHG--GGTSTTEEC
T ss_pred             HHHHhhCCCCEEEECCCCCCCCCCCcccHHHHHHHHHHHhhhhhhcCCceEEeecccccccccccccch--hhccccccC
Confidence            3456678999999999999999998888899998888776432 3579999999999998876655543  334567777


Q ss_pred             cc-eEEe------cCCeEEEEEEeCCcCcccccCCC---CCCCCcccccchhHHHHHHhh
Q 040839           81 SR-SFIL------DAEIAEFVFVDTTPFVDEYFQDP---GDSTYDWRGVYQRKEYLSDLL  130 (131)
Q Consensus        81 p~-~~~~------~~~~v~~~~lDT~~~~~~y~~~~---~~~~~~w~~~~~~~~~~~~~~  130 (131)
                      |. +|.+      ..+.++|+++||.++........   ............|.+++++.|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~ldt~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~WL~~~L  171 (302)
T d1utea_         112 PSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQL  171 (302)
T ss_dssp             CSSSEEEEEECTTSSCEEEEEECCHHHHHCCGGGSTTCSCCSCSCHHHHHHHHHHHHHHH
T ss_pred             CCcccceeecccCCCCcEEEEEccceeEeecccccccccccccccchhHHHHHHHHHHHH
Confidence            73 3432      24689999999987654322211   111112223455667776654

>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Purple acid phosphatase-like
domain: Plant purple acid phosphatase, catalytic domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.39  E-value=7.6e-14  Score=106.64  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCccc---
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCS---   81 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p---   81 (131)
                      ....+|||||++||++|.+|.......+|.. |.+....-...+||++++||||+...........+..-..+|.+|   
T Consensus        31 ~~~~~pdfvl~~GDl~Y~~~~~~~~~~~wd~-~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~  109 (312)
T d2qfra2          31 LSPKKGQTVLFVGDLSYADRYPNHDNVRWDT-WGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEA  109 (312)
T ss_dssp             HCSSCCSEEEECSCCCCGGGSGGGCTHHHHH-HHHHHHHHHTTSCEEECCCGGGTCCBGGGTBCSTTHHHHHHCCCCGGG
T ss_pred             HcCCCCCEEEECCCCCcCCCCcccchHHHHH-HHHHHHHHhhcceEEEecccccccccccccccccccchhhhccCCccc
Confidence            3457899999999999999887766777765 332222112358999999999975322111110011111334444   


Q ss_pred             ------ceEEecCCeEEEEEEeCCc
Q 040839           82 ------RSFILDAEIAEFVFVDTTP  100 (131)
Q Consensus        82 ------~~~~~~~~~v~~~~lDT~~  100 (131)
                            .+|+++.+.++||+|||+.
T Consensus       110 ~~~~~~~~Ysf~~g~v~fi~Lds~~  134 (312)
T d2qfra2         110 SQSTSPFWYSIKRASAHIIVLSSYS  134 (312)
T ss_dssp             GTCSSTTSEEEEETTEEEEECCTTS
T ss_pred             cCCCCCceEEEEECCEEEEEeeccc
Confidence                  3688999999999999974

>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Glycerophosphodiesterase GpdQ
species: Enterobacter aerogenes [TaxId: 548]

Probab=98.96  E-value=6.5e-10  Score=81.97  Aligned_cols=83  Identities=22%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc-cceEEe
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC-SRSFIL   86 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~-p~~~~~   86 (131)
                      .+||+||.+||.+..      ..+.-...+.+.+.  .+++|+++++||||...............  ..... ...|.+
T Consensus        40 ~~~D~vv~~GDl~~~------~~~~~y~~~~~~l~--~l~~p~~~i~GNHD~~~~~~~~~~~~~~~--~~~~~~~~~~~~  109 (271)
T d3d03a1          40 ERPDAVVVSGDIVNC------GRPEEYQVARQILG--SLNYPLYLIPGNHDDKALFLEYLQPLCPQ--LGSDANNMRCAV  109 (271)
T ss_dssp             SCCSEEEEESCCBSS------CCHHHHHHHHHHHT--TCSSCEEEECCTTSCHHHHHHHHGGGSGG--GCSCGGGCCEEE
T ss_pred             CCCCEEEECcccCcC------CcchhHHHHHHHHh--ccCCCEEEEecCccchHHHHHHhhhhhhc--cccccCcceEEE
Confidence            579999999998742      23333344556653  57899999999999865433333211000  00111 135667


Q ss_pred             cCCeEEEEEEeCCc
Q 040839           87 DAEIAEFVFVDTTP  100 (131)
Q Consensus        87 ~~~~v~~~~lDT~~  100 (131)
                      ..+.+++++|||+.
T Consensus       110 ~~~~~~~i~ldt~~  123 (271)
T d3d03a1         110 DDFATRLLFIDSSR  123 (271)
T ss_dssp             CSSSSEEEECCCCC
T ss_pred             ecCCeEEEeccccc
Confidence            77889999999974

>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: GpdQ-like
domain: Rv0805 cyclic nucleotide phosphodiesterase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.73  E-value=3e-09  Score=77.30  Aligned_cols=83  Identities=23%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC--CCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceEE
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT--APSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFI   85 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~--~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~~   85 (131)
                      .+|||||.+||.+. .|     ++.-.+.+.+.+.  ...+++|++.++||||...........     ......+.++.
T Consensus        44 ~~pD~vl~~GDl~~-~g-----~~~~~~~~~~~l~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~-----~~~~~~~~~~~  112 (256)
T d2hy1a1          44 LRPDAIVFTGDLAD-KG-----EPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAELRKFLLD-----EAPSMAPLDRV  112 (256)
T ss_dssp             CCCSEEEECSCCBS-SC-----CHHHHHHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHTTC-----CCCCCSCCCEE
T ss_pred             CCCCEEEECCCCCC-CC-----ChhHHHHHHHHhhhhhhhcCCCEEEEcccccchhhhhhhhcc-----ccccccccceE
Confidence            57999999999773 22     2332223333221  024679999999999964322222210     11122234555


Q ss_pred             ecCCeEEEEEEeCCcC
Q 040839           86 LDAEIAEFVFVDTTPF  101 (131)
Q Consensus        86 ~~~~~v~~~~lDT~~~  101 (131)
                      +..+.++|++|||...
T Consensus       113 ~~~~~~~~~~ldt~~~  128 (256)
T d2hy1a1         113 CMIDGLRIIVLDTSVP  128 (256)
T ss_dssp             EEETTEEEEECCCBCT
T ss_pred             EEecccceeeeeeeec
Confidence            5557899999999753

>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=98.52  E-value=1.6e-08  Score=72.96  Aligned_cols=93  Identities=16%  Similarity=0.125  Sum_probs=49.4

Q ss_pred             hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCc------
Q 040839            6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWL------   79 (131)
Q Consensus         6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~------   79 (131)
                      ++.+|||||.+||++...........+....+.+.+.  .+++||+.++||||+......+..........++.      
T Consensus        46 ~~~~~DfVv~~GDl~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (320)
T d2nxfa1          46 RRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELD--ACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQRTGTDTGSD  123 (320)
T ss_dssp             HHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHH--TTCSEEEECCCHHHHHHCCHHHHHTSTTCCCC------CEE
T ss_pred             hhCCCCEEEECCCCCCCCCcchhHHHHHHHHHHHHHH--HcCCCEEEecccCccccccchhcccccccchhhhccccccc
Confidence            4678999999999985322111111122222333332  57899999999999865322221110000011111      


Q ss_pred             ---cc--ceEEecCCeEEEEEEeCCc
Q 040839           80 ---CS--RSFILDAEIAEFVFVDTTP  100 (131)
Q Consensus        80 ---~p--~~~~~~~~~v~~~~lDT~~  100 (131)
                         .+  ..+....+.++|+.+|+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (320)
T d2nxfa1         124 LIGDDIYAYEFSPAPNFRFVLLDAYD  149 (320)
T ss_dssp             CGGGTCCCEEEEEETTEEEEECCTTS
T ss_pred             ccCCCCccceeecCCCeEEEEecCcc
Confidence               11  1223444678999999864

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Hypothetical protein TT1561
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=1.7e-07  Score=65.27  Aligned_cols=50  Identities=14%  Similarity=0.108  Sum_probs=34.2

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .+.+.++|+||++||.+ +.|..    +.-...+.+.+.  .+++|++.|+||||..
T Consensus        27 ~~~~~~~D~vv~~GDl~-~~~~~----~~~~~~~~~~L~--~~~~pv~~i~GNHD~~   76 (228)
T d1uf3a_          27 LAPDTGADAIALIGNLM-PKAAK----SRDYAAFFRILS--EAHLPTAYVPGPQDAP   76 (228)
T ss_dssp             HHHHHTCSEEEEESCSS-CTTCC----HHHHHHHHHHHG--GGCSCEEEECCTTSCS
T ss_pred             HHhhcCCCEEEECCCCC-CCCcc----chHHHHhhhhhc--cccceEEEEecCCCch
Confidence            45678999999999975 33322    222223444443  4689999999999975

>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: DNA double-strand break repair nuclease
domain: Mre11
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.33  E-value=1.5e-07  Score=69.00  Aligned_cols=55  Identities=22%  Similarity=0.375  Sum_probs=35.2

Q ss_pred             hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccCCC
Q 040839            4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~~~   62 (131)
                      .+.+.+||+||.+||.|. .+..+   +.-...+.+.+. ....++|+|.++||||....
T Consensus        35 ~a~~~~~D~vli~GDlfd-~~~~~---~~~~~~~~~~~~~l~~~~i~v~~i~GNHD~~~~   90 (333)
T d1ii7a_          35 IAVQENVDFILIAGDLFH-SSRPS---PGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQR   90 (333)
T ss_dssp             HHHHTTCSEEEEESCSBS-SSSCC---HHHHHHHHHHHHHHHTTTCCEEEECCTTTCCSS
T ss_pred             HHHHcCCCEEEECCCCCC-CCCCC---HHHHHHHHHHHhhHHhcCCcEEEeCCCCccccc
Confidence            466789999999999874 33222   222222222221 12467999999999998653

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: TT1561-like
domain: Uncharacterized protein Aq 1956
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.19  E-value=1e-06  Score=61.98  Aligned_cols=18  Identities=11%  Similarity=0.230  Sum_probs=15.4

Q ss_pred             hhhhcCCCEEEEcCCccC
Q 040839            4 IGEKLEIDFVISTGDNFY   21 (131)
Q Consensus         4 ~~~~~~~d~vv~~GDn~Y   21 (131)
                      .+.+.+||+||.+||.+.
T Consensus        24 ~~~~~~~D~vli~GDl~~   41 (257)
T d2yvta1          24 VIAEKQPDILVVVGNILK   41 (257)
T ss_dssp             HHHHHCCSEEEEESCCCC
T ss_pred             HHhhcCCCEEEEecccCC
Confidence            467789999999999774

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Phosphodiesterase yfcE
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0002  Score=48.43  Aligned_cols=52  Identities=15%  Similarity=0.123  Sum_probs=32.3

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCC--ChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGED--DPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~--d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +++.++|.||++||.+. .|..+..  ...-...++..   ..+..|++.+.||||..
T Consensus        24 ~~~~~~D~iv~~GDiv~-~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~GNhD~~   77 (184)
T d1su1a_          24 FAQSGAQWLVILGDVLN-HGPRNALPEGYAPAKVVERL---NEVAHKVIAVRGNCDSE   77 (184)
T ss_dssp             HHHHTCSEEEECSCCSC-CCTTSCCCTTBCHHHHHHHH---HTTGGGEEECCCTTCCH
T ss_pred             HhhcCCCEEEEcCcccc-cCccchhhhccCcHHHHHHH---HhcCCcEEEecCCCCch
Confidence            35679999999999873 4433221  11111222222   24567999999999985

>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Phosphoesterase-related
domain: Hypothetical protein PF1291
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.65  E-value=0.00032  Score=48.88  Aligned_cols=44  Identities=11%  Similarity=0.016  Sum_probs=26.7

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      .++|.||++||.+ +.|..+   ....+.+.++.    -+.++++|+||||.
T Consensus        31 ~~~D~ii~~GDlv-d~G~~~---~evi~~l~~l~----~~~~v~~v~GNHD~   74 (251)
T d1nnwa_          31 YEIEKYYILGNIV-GLFPYP---KEVIEVIKDLT----KKENVKIIRGKYDQ   74 (251)
T ss_dssp             CCEEEEEEESCSS-SSSSCH---HHHHHHHHHHH----HHSCEEEECCHHHH
T ss_pred             CCCcEEEEecCcC-CCCCCc---HHHHHHHHHHh----hcCCEEEEeccHHH
Confidence            4679999999987 344321   12222222221    12578999999996

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=96.57  E-value=0.0013  Score=44.07  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      .++.+||.|+.+||.+.         +   ..++..   ..+..|++.+.||||+.
T Consensus        23 ~~~~~~D~ii~~GD~~~---------~---~~~~~l---~~~~~~~~~v~GN~D~~   63 (165)
T d1s3la_          23 FNDENVETVIHCGDFVS---------L---FVIKEF---ENLNANIIATYGNNDGE   63 (165)
T ss_dssp             HHHSCCSEEEECSCCCS---------T---HHHHHG---GGCSSEEEEECCTTCCC
T ss_pred             HHhcCCCEEEECCCccC---------H---HHHHHH---hhcCccEEEEccccccc
Confidence            35679999999999652         1   122222   23568999999999975

>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Hypothetical protein aq 1666
domain: Hypothetical protein aq 1666
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.52  E-value=0.0013  Score=45.51  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      +.|.|+.+||..+..+..  .  .+.    ++.  ..|+++.++|+||||..
T Consensus        43 ~~D~v~~LGD~~~~~~~~--~--~~~----~~l--~~L~g~~~lI~GNHD~~   84 (188)
T d1xm7a_          43 PEDTLYHLGDFTWHFNDK--N--EYL----RIW--KALPGRKILVMGNHDKD   84 (188)
T ss_dssp             TTCEEEECSCCBSCSCCT--T--SHH----HHH--HHSSSEEEEECCTTCCC
T ss_pred             CCCEEEEeCCccccCCCH--H--HHH----HHH--HHCCCceEEEecCCCch
Confidence            568999999987643221  1  122    222  13667889999999975

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.22  E-value=0.0075  Score=41.22  Aligned_cols=40  Identities=20%  Similarity=0.225  Sum_probs=27.0

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      ..++|.|+.+||..         ++.   .++.+   +.+..|+++|.||||+..
T Consensus        28 ~~~~D~Ii~~GDi~---------~~e---~l~~l---~~~~~~v~~V~GN~D~~~   67 (182)
T d1z2wa1          28 PGKIQHILCTGNLC---------TKE---SYDYL---KTLAGDVHIVRGDFDENL   67 (182)
T ss_dssp             TTSCSEEEECSCCB---------SHH---HHHHH---HHHCSEEEECCCTTCCCT
T ss_pred             ccCCCEEEEccCcc---------chh---hHHHH---HhhCCceEEEeCCcCccc
Confidence            45799999999954         122   22211   124468999999999864

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Vacuolar protein sorting 29, VPS29
species: Cryptosporidium parvum [TaxId: 5807]

Probab=95.01  E-value=0.017  Score=39.50  Aligned_cols=39  Identities=23%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839            7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR   60 (131)
Q Consensus         7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~   60 (131)
                      ..++|.|+.+||..         ++.   .++.+-   .+..++++|+||||..
T Consensus        31 ~~~vD~ii~~GDi~---------~~~---~l~~l~---~l~~~v~~V~GN~D~~   69 (193)
T d2a22a1          31 TDKINYVLCTGNVC---------SQE---YVEMLK---NITKNVYIVSGDLDSA   69 (193)
T ss_dssp             CTTCCEEEECSCCC---------CHH---HHHHHH---HHCSCEEECCCTTCCS
T ss_pred             cCCCCEEEECCCCC---------CHH---HHHHHH---hhCCCEEEEcCCCCcc
Confidence            45899999999953         222   222211   2345789999999975

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Uncharacterized protein SP1879
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.85  E-value=0.01  Score=40.04  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG   61 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~   61 (131)
                      .++|.|+.+||..++..     .+              ...++++|.||||+..
T Consensus        28 ~~~D~iih~GD~~~~~~-----~~--------------~~~~~~~V~GN~D~~~   62 (173)
T d3ck2a1          28 GKVDAVFHNGDSELRPD-----SP--------------LWEGIRVVKGNMDFYA   62 (173)
T ss_dssp             TTSSEEEECSCCCSCTT-----CG--------------GGTTEEECCCTTCCST
T ss_pred             cCCCEEEECCcccCccc-----ch--------------hhcCCeEEecCccccc
Confidence            46999999999765321     01              1247889999999874

>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase {Bacteriophage lambda [TaxId: 10710]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: Protein serine/threonine phosphatase
domain: lambda ser/thr protein phosphatase
species: Bacteriophage lambda [TaxId: 10710]

Probab=93.89  E-value=0.016  Score=39.69  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=26.3

Q ss_pred             cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839            8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY   59 (131)
Q Consensus         8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~   59 (131)
                      .+.|-+|++||.| +.|..+      .+.++-+.     +..+.+++||||.
T Consensus        39 ~~~d~lv~lGD~v-DrGp~s------~~vl~~l~-----~~~~~~i~GNHE~   78 (219)
T d1g5ba_          39 NKKDLLISVGDLV-DRGAEN------VECLELIT-----FPWFRAVRGNHEQ   78 (219)
T ss_dssp             TTTCEEEECSCCS-SSSSCH------HHHHGGGG-----STTEEECCCHHHH
T ss_pred             CCCCEEEEeCCcc-ccCccH------HHHHHHhh-----ccccccccCcHHH
Confidence            3568999999987 455532      12343332     2458899999995

>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Candida albicans [TaxId: 5476]

Probab=89.60  E-value=0.028  Score=41.39  Aligned_cols=52  Identities=25%  Similarity=0.439  Sum_probs=26.6

Q ss_pred             hhhcCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCce-EEeCCCcccCC
Q 040839            5 GEKLEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQW-YNVLGNHDYRG   61 (131)
Q Consensus         5 ~~~~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~-~~vlGNHD~~~   61 (131)
                      +++.+++ ++|..||.|-.+++.+...++-.. .-+++.    .+++ .+++||||+..
T Consensus        51 ~~~~~~~~llldaGD~~~Gt~~~~~~~~~G~~-~~~~mn----~lgyDa~t~GNHEfd~  104 (322)
T d3c9fa2          51 AHSRNQDLLLIDSGDRHDGNGLSDITSPNGLK-STPIFI----KQDYDLLTIGNHELYL  104 (322)
T ss_dssp             HHHTTCEEEEEECSCCCSSCHHHHSSSSTTTT-THHHHT----TSCCSEECCCGGGSSS
T ss_pred             HHhcCCCEEEEECCccCCCCchhhhcccCChH-HHHHHh----ccCCcEEeecceeccc
Confidence            3445566 566799998655442211111000 011121    1333 77899999864

>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.02  E-value=0.38  Score=35.18  Aligned_cols=49  Identities=16%  Similarity=0.114  Sum_probs=24.2

Q ss_pred             cCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            8 LEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         8 ~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      .+++ ++|..||+|.....+.....+  ..+ +.+.  .++ .=.+++||||+..+
T Consensus        48 ~~~~~l~ldaGD~~~gs~~s~~~~g~--~~~-~~mn--~~g-~Da~~~GNHEfd~G   97 (337)
T d1usha2          48 EGGSVLLLSGGDINTGVPESDLQDAE--PDF-RGMN--LVG-YDAMAIGNHEFDNP   97 (337)
T ss_dssp             TTCEEEEEECSCCSSSCHHHHTTTTH--HHH-HHHH--HHT-CCEEECCGGGGSSC
T ss_pred             cCCCEEEEECCCCcccCHHHHHhCCh--HHH-HHHH--hcC-CeEEEechhhhccc
Confidence            4455 566699998543332211111  111 1111  112 22577999999754

>d2z1aa2 d.159.1.2 (A:28-329) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
domain: 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.73  E-value=0.23  Score=35.91  Aligned_cols=48  Identities=17%  Similarity=0.132  Sum_probs=25.2

Q ss_pred             CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839            9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD   62 (131)
Q Consensus         9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~   62 (131)
                      +-.++|..||+|..+...+..  +-.... +++.   .-..=.+++||||+..+
T Consensus        47 ~~~l~ldaGD~~~Gs~~~~~~--~g~~~~-~~~n---~~gyDa~~~GNHEfd~G   94 (302)
T d2z1aa2          47 KNPLFLDAGDVFQGTLYFNQY--RGLADR-YFMH---RLRYRAMALGNHEFDLG   94 (302)
T ss_dssp             SSEEEEECSCCSSSSHHHHHH--TTHHHH-HHHH---HTTCCEEECCGGGGTTC
T ss_pred             CCeEEEEcCCCCCCCHhHhhh--cchhHH-HHHH---hcccccccccchhhhcC
Confidence            346799999998544221100  111111 1111   11344678999999754